Query 025130
Match_columns 257
No_of_seqs 67 out of 69
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 02:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07889 DUF1664: Protein of u 100.0 6.9E-62 1.5E-66 402.0 14.5 126 83-209 1-126 (126)
2 PF10805 DUF2730: Protein of u 96.9 0.0031 6.6E-08 50.8 6.3 85 97-205 14-98 (106)
3 PF04375 HemX: HemX; InterPro 95.7 0.1 2.2E-06 50.0 10.7 10 99-108 41-50 (372)
4 TIGR00293 prefoldin, archaeal 95.6 0.23 4.9E-06 40.1 10.6 76 76-182 48-124 (126)
5 PRK10884 SH3 domain-containing 95.6 0.47 1E-05 42.7 13.5 98 102-207 66-167 (206)
6 PRK03947 prefoldin subunit alp 95.3 0.5 1.1E-05 38.9 12.1 55 98-183 79-133 (140)
7 PRK11637 AmiB activator; Provi 95.3 0.24 5.2E-06 47.9 11.6 80 124-203 45-127 (428)
8 PF01519 DUF16: Protein of unk 95.1 0.18 3.9E-06 41.3 8.4 81 118-207 22-102 (102)
9 PF11932 DUF3450: Protein of u 94.9 0.52 1.1E-05 42.5 12.0 92 133-224 24-119 (251)
10 PF00038 Filament: Intermediat 94.7 1.1 2.3E-05 41.0 13.6 99 123-221 166-265 (312)
11 cd00584 Prefoldin_alpha Prefol 94.0 1.3 2.8E-05 35.8 11.3 43 141-183 84-126 (129)
12 PHA02562 46 endonuclease subun 93.8 1 2.2E-05 44.1 12.3 104 129-232 191-299 (562)
13 PRK14011 prefoldin subunit alp 93.7 0.83 1.8E-05 39.1 10.0 41 141-181 85-125 (144)
14 PF14712 Snapin_Pallidin: Snap 93.7 1.6 3.4E-05 33.5 10.7 72 134-206 15-91 (92)
15 KOG2629 Peroxisomal membrane a 93.5 0.3 6.5E-06 46.5 7.6 79 87-166 82-169 (300)
16 PF02996 Prefoldin: Prefoldin 93.1 0.66 1.4E-05 36.7 8.0 77 76-183 39-116 (120)
17 TIGR01000 bacteriocin_acc bact 93.0 6.2 0.00013 38.5 16.1 50 123-172 151-200 (457)
18 PF07889 DUF1664: Protein of u 92.9 1.9 4.1E-05 36.4 10.8 32 169-200 93-124 (126)
19 PF12718 Tropomyosin_1: Tropom 92.9 2.4 5.2E-05 35.9 11.5 61 149-209 78-138 (143)
20 PF04582 Reo_sigmaC: Reovirus 92.9 0.14 3E-06 49.2 4.5 86 123-208 67-155 (326)
21 PRK11637 AmiB activator; Provi 92.8 1.9 4.1E-05 41.7 12.1 79 129-207 43-124 (428)
22 PF13747 DUF4164: Domain of un 92.5 1.9 4.1E-05 34.0 9.6 82 138-223 2-83 (89)
23 PF10158 LOH1CR12: Tumour supp 91.9 4.6 9.9E-05 34.1 11.9 48 122-169 27-74 (131)
24 PF06103 DUF948: Bacterial pro 91.6 2.1 4.5E-05 32.8 8.9 29 117-145 17-45 (90)
25 PRK10920 putative uroporphyrin 90.9 1.3 2.7E-05 43.6 8.7 55 99-161 48-102 (390)
26 PF00015 MCPsignal: Methyl-acc 90.4 9.7 0.00021 31.9 13.8 22 53-74 40-62 (213)
27 PF10805 DUF2730: Protein of u 90.2 3.3 7.2E-05 33.3 9.2 65 150-221 34-100 (106)
28 COG4942 Membrane-bound metallo 89.5 6.4 0.00014 39.3 12.2 86 133-223 38-123 (420)
29 COG3883 Uncharacterized protei 89.0 4.6 0.0001 38.0 10.4 68 136-203 37-104 (265)
30 PF10498 IFT57: Intra-flagella 88.9 6 0.00013 38.4 11.5 77 115-191 223-299 (359)
31 PF04513 Baculo_PEP_C: Baculov 88.8 9.3 0.0002 32.9 11.3 81 123-203 35-116 (140)
32 PF01442 Apolipoprotein: Apoli 88.7 10 0.00022 30.8 11.2 15 125-139 4-18 (202)
33 PHA02562 46 endonuclease subun 88.2 11 0.00023 37.1 12.8 48 158-205 337-384 (562)
34 PF00015 MCPsignal: Methyl-acc 87.9 15 0.00032 30.8 13.1 95 128-222 84-178 (213)
35 PF05816 TelA: Toxic anion res 87.5 10 0.00022 36.0 11.8 100 120-219 85-202 (333)
36 PF05597 Phasin: Poly(hydroxya 87.4 4.6 9.9E-05 34.2 8.5 24 185-208 108-131 (132)
37 PF11932 DUF3450: Protein of u 87.3 14 0.0003 33.4 12.1 72 129-200 34-105 (251)
38 smart00502 BBC B-Box C-termina 87.2 12 0.00025 28.8 10.7 26 210-235 85-112 (127)
39 PRK04406 hypothetical protein; 86.6 5.2 0.00011 30.7 7.7 53 144-196 4-56 (75)
40 TIGR02132 phaR_Bmeg polyhydrox 86.6 2.9 6.3E-05 37.6 7.2 55 150-204 78-132 (189)
41 smart00283 MA Methyl-accepting 86.5 19 0.00042 30.6 15.2 79 122-200 136-214 (262)
42 PF05478 Prominin: Prominin; 86.5 11 0.00024 39.9 12.5 35 126-160 187-222 (806)
43 PF10046 BLOC1_2: Biogenesis o 86.4 15 0.00032 29.2 11.1 68 141-208 25-95 (99)
44 PF06103 DUF948: Bacterial pro 86.3 11 0.00023 28.9 9.4 56 150-205 32-87 (90)
45 PRK10884 SH3 domain-containing 86.3 11 0.00023 34.1 10.7 115 71-192 50-166 (206)
46 PF10241 KxDL: Uncharacterized 86.2 9.4 0.0002 29.8 9.1 63 142-204 16-82 (88)
47 PRK04778 septation ring format 86.0 18 0.0004 36.6 13.4 69 166-234 377-446 (569)
48 PF06419 COG6: Conserved oligo 85.9 8.7 0.00019 39.5 11.2 92 113-214 6-101 (618)
49 PF08317 Spc7: Spc7 kinetochor 85.8 32 0.00069 32.5 14.5 114 115-228 152-272 (325)
50 PRK06975 bifunctional uroporph 85.8 4.3 9.3E-05 42.0 9.0 19 145-163 379-397 (656)
51 KOG0250 DNA repair protein RAD 85.8 13 0.00028 41.2 12.7 92 133-224 291-382 (1074)
52 PF05531 NPV_P10: Nucleopolyhe 85.7 3.9 8.4E-05 31.9 6.6 21 184-204 40-60 (75)
53 PF00261 Tropomyosin: Tropomyo 85.4 16 0.00035 32.9 11.5 71 150-220 91-161 (237)
54 PF07798 DUF1640: Protein of u 85.4 23 0.00051 30.5 14.3 96 118-216 43-143 (177)
55 PRK09039 hypothetical protein; 85.2 15 0.00033 35.2 11.8 57 144-200 109-165 (343)
56 PF05739 SNARE: SNARE domain; 85.0 9.3 0.0002 26.8 7.9 54 151-204 4-57 (63)
57 smart00787 Spc7 Spc7 kinetocho 84.6 31 0.00068 32.9 13.5 128 119-246 151-288 (312)
58 PF12325 TMF_TATA_bd: TATA ele 84.6 9.4 0.0002 31.8 8.9 65 119-184 44-108 (120)
59 PRK04778 septation ring format 84.4 27 0.00059 35.4 13.8 100 124-223 280-413 (569)
60 PRK13182 racA polar chromosome 84.2 5.5 0.00012 35.0 7.7 62 144-207 85-146 (175)
61 PF05791 Bacillus_HBL: Bacillu 84.1 22 0.00047 31.1 11.4 88 120-207 78-170 (184)
62 PF10498 IFT57: Intra-flagella 83.7 13 0.00028 36.2 10.7 87 112-202 231-324 (359)
63 KOG0972 Huntingtin interacting 83.1 17 0.00038 35.4 11.1 99 109-207 223-326 (384)
64 PF09602 PhaP_Bmeg: Polyhydrox 83.0 19 0.00042 31.9 10.6 92 108-209 14-108 (165)
65 cd00890 Prefoldin Prefoldin is 82.9 4.5 9.8E-05 32.0 6.2 42 142-183 85-126 (129)
66 PF06008 Laminin_I: Laminin Do 82.8 29 0.00063 31.5 12.1 89 123-215 21-109 (264)
67 COG2959 HemX Uncharacterized e 82.7 11 0.00024 37.4 9.8 61 91-162 39-101 (391)
68 PF12732 YtxH: YtxH-like prote 82.6 5.2 0.00011 29.8 6.0 47 91-144 5-51 (74)
69 PF08614 ATG16: Autophagy prot 82.5 6.6 0.00014 34.3 7.6 96 112-207 71-172 (194)
70 TIGR01837 PHA_granule_1 poly(h 82.3 8.5 0.00019 31.6 7.7 44 164-207 73-117 (118)
71 PF04102 SlyX: SlyX; InterPro 81.8 6.8 0.00015 29.3 6.4 51 149-206 2-52 (69)
72 PF03962 Mnd1: Mnd1 family; I 81.1 39 0.00083 29.9 12.2 124 111-241 57-183 (188)
73 PF12718 Tropomyosin_1: Tropom 81.0 33 0.00072 29.0 11.7 90 126-219 17-106 (143)
74 KOG1161 Protein involved in va 80.8 6.2 0.00014 38.0 7.3 69 123-192 45-113 (310)
75 PF04380 BMFP: Membrane fusoge 80.8 7.3 0.00016 29.9 6.4 75 120-207 4-78 (79)
76 COG1579 Zn-ribbon protein, pos 80.5 10 0.00023 35.1 8.4 66 152-217 11-76 (239)
77 PRK15048 methyl-accepting chem 80.3 52 0.0011 32.4 13.7 51 140-190 273-323 (553)
78 PF10168 Nup88: Nuclear pore c 80.1 44 0.00095 35.4 13.8 69 142-224 556-624 (717)
79 PF06295 DUF1043: Protein of u 79.9 16 0.00034 30.4 8.5 42 137-178 29-70 (128)
80 COG1196 Smc Chromosome segrega 79.9 43 0.00093 36.9 14.1 26 182-207 873-898 (1163)
81 PF04375 HemX: HemX; InterPro 79.5 10 0.00022 36.5 8.4 16 95-110 40-55 (372)
82 smart00806 AIP3 Actin interact 79.1 25 0.00053 35.4 11.0 99 123-221 177-307 (426)
83 PF03915 AIP3: Actin interacti 79.1 15 0.00033 36.6 9.6 114 139-253 201-345 (424)
84 PRK00295 hypothetical protein; 78.8 12 0.00027 28.1 6.9 49 149-197 3-51 (68)
85 PF09177 Syntaxin-6_N: Syntaxi 78.4 12 0.00026 29.2 7.0 57 142-205 37-96 (97)
86 PF04513 Baculo_PEP_C: Baculov 78.3 44 0.00095 28.9 11.2 79 124-205 18-104 (140)
87 COG1196 Smc Chromosome segrega 78.2 45 0.00097 36.8 13.6 69 154-223 442-510 (1163)
88 COG4942 Membrane-bound metallo 78.2 40 0.00088 33.8 12.2 89 120-208 158-253 (420)
89 PRK02119 hypothetical protein; 78.1 15 0.00033 27.9 7.4 49 148-196 6-54 (73)
90 PF10883 DUF2681: Protein of u 77.7 2.5 5.5E-05 33.7 3.1 16 96-111 11-26 (87)
91 PF10168 Nup88: Nuclear pore c 77.6 28 0.0006 36.9 11.5 73 142-214 584-667 (717)
92 PF10046 BLOC1_2: Biogenesis o 77.2 34 0.00074 27.1 9.6 19 186-204 80-98 (99)
93 PF14257 DUF4349: Domain of un 77.2 9.6 0.00021 34.4 7.1 53 151-203 139-193 (262)
94 PF15450 DUF4631: Domain of un 77.0 32 0.00069 35.5 11.2 96 112-207 333-451 (531)
95 PRK02793 phi X174 lysis protei 76.8 15 0.00033 27.8 7.0 44 148-191 5-48 (72)
96 TIGR03513 GldL_gliding gliding 76.7 60 0.0013 29.6 12.2 90 114-205 102-191 (202)
97 PF04129 Vps52: Vps52 / Sac2 f 76.5 28 0.00062 34.9 10.8 56 151-206 14-69 (508)
98 PF08317 Spc7: Spc7 kinetochor 76.5 45 0.00097 31.5 11.6 79 130-208 149-245 (325)
99 PF07888 CALCOCO1: Calcium bin 76.2 25 0.00054 36.4 10.3 58 114-171 129-191 (546)
100 PF04799 Fzo_mitofusin: fzo-li 76.1 23 0.0005 31.5 8.9 64 137-207 102-165 (171)
101 PRK00846 hypothetical protein; 75.8 23 0.0005 27.6 7.8 54 146-206 8-61 (77)
102 PF02403 Seryl_tRNA_N: Seryl-t 75.7 18 0.0004 28.3 7.5 60 143-206 35-94 (108)
103 PRK04325 hypothetical protein; 75.6 19 0.00042 27.4 7.3 44 148-191 6-49 (74)
104 PF05377 FlaC_arch: Flagella a 75.6 7.9 0.00017 28.6 4.9 36 153-188 2-37 (55)
105 PF07295 DUF1451: Protein of u 75.5 16 0.00034 31.5 7.5 55 136-190 3-58 (146)
106 PF05008 V-SNARE: Vesicle tran 75.4 18 0.00038 26.8 7.0 50 125-177 2-51 (79)
107 COG5283 Phage-related tail pro 75.1 43 0.00092 37.7 12.3 110 124-233 27-146 (1213)
108 KOG0250 DNA repair protein RAD 75.0 33 0.00072 38.1 11.4 60 148-207 362-422 (1074)
109 COG2900 SlyX Uncharacterized p 74.9 20 0.00043 27.9 7.2 53 146-198 3-55 (72)
110 PF04582 Reo_sigmaC: Reovirus 74.8 5.8 0.00012 38.4 5.2 56 149-204 103-158 (326)
111 PRK00736 hypothetical protein; 74.3 20 0.00044 26.9 7.0 43 149-191 3-45 (68)
112 PF06160 EzrA: Septation ring 74.1 25 0.00054 35.8 9.8 61 136-196 371-431 (560)
113 KOG0161 Myosin class II heavy 74.0 31 0.00068 40.5 11.4 80 128-207 1363-1442(1930)
114 PF03915 AIP3: Actin interacti 73.3 49 0.0011 33.1 11.4 35 118-152 205-239 (424)
115 PF03233 Cauli_AT: Aphid trans 73.2 11 0.00024 33.3 6.2 49 143-191 110-161 (163)
116 TIGR03495 phage_LysB phage lys 72.8 14 0.00031 31.5 6.6 14 97-110 8-21 (135)
117 PRK00888 ftsB cell division pr 72.6 14 0.00031 29.8 6.2 31 148-178 31-61 (105)
118 PF14197 Cep57_CLD_2: Centroso 72.6 39 0.00085 25.6 8.7 65 141-205 2-66 (69)
119 TIGR03185 DNA_S_dndD DNA sulfu 72.3 49 0.0011 34.0 11.4 34 172-205 435-468 (650)
120 PF04799 Fzo_mitofusin: fzo-li 72.1 21 0.00046 31.7 7.7 57 130-186 102-165 (171)
121 cd00632 Prefoldin_beta Prefold 71.9 16 0.00035 28.9 6.3 14 56-69 16-29 (105)
122 PF02994 Transposase_22: L1 tr 71.4 12 0.00025 36.3 6.5 18 185-202 171-188 (370)
123 PF00261 Tropomyosin: Tropomyo 71.3 78 0.0017 28.5 12.2 77 123-199 145-224 (237)
124 COG1842 PspA Phage shock prote 71.2 51 0.0011 30.1 10.2 97 112-213 85-186 (225)
125 PF12128 DUF3584: Protein of u 71.1 51 0.0011 36.5 12.0 93 128-223 258-351 (1201)
126 PF10186 Atg14: UV radiation r 70.9 76 0.0017 28.2 14.2 47 143-189 62-108 (302)
127 PRK03918 chromosome segregatio 70.9 74 0.0016 33.2 12.5 15 149-163 638-652 (880)
128 COG3750 Uncharacterized protei 70.5 28 0.00062 27.7 7.2 45 145-196 15-59 (85)
129 COG3883 Uncharacterized protei 70.1 31 0.00068 32.6 8.8 22 153-174 33-54 (265)
130 PF10779 XhlA: Haemolysin XhlA 70.0 25 0.00054 26.2 6.6 15 148-162 3-17 (71)
131 PF10073 DUF2312: Uncharacteri 69.9 19 0.0004 28.1 6.0 45 146-197 6-50 (74)
132 PF00509 Hemagglutinin: Haemag 69.9 7.2 0.00016 40.2 4.9 78 119-196 364-451 (550)
133 PF04100 Vps53_N: Vps53-like, 69.8 25 0.00054 34.2 8.4 26 181-206 87-112 (383)
134 PHA01750 hypothetical protein 69.2 17 0.00037 28.2 5.6 32 115-146 23-55 (75)
135 PRK02224 chromosome segregatio 69.2 1.4E+02 0.003 31.4 14.1 18 145-162 181-198 (880)
136 PRK10803 tol-pal system protei 69.0 18 0.00039 33.3 6.9 35 169-203 65-99 (263)
137 PF07439 DUF1515: Protein of u 68.8 39 0.00084 28.3 8.0 54 129-182 4-64 (112)
138 PRK03918 chromosome segregatio 68.8 44 0.00096 34.8 10.4 65 134-198 159-226 (880)
139 PF06120 Phage_HK97_TLTM: Tail 68.7 78 0.0017 30.4 11.2 110 92-214 24-152 (301)
140 PRK04863 mukB cell division pr 68.7 1.1E+02 0.0024 35.2 14.1 26 126-151 314-339 (1486)
141 PF08702 Fib_alpha: Fibrinogen 68.5 75 0.0016 27.1 12.9 96 113-208 23-126 (146)
142 PRK11166 chemotaxis regulator 68.4 73 0.0016 29.2 10.5 87 122-208 26-124 (214)
143 PRK13694 hypothetical protein; 68.4 29 0.00064 27.6 7.0 47 144-197 12-58 (83)
144 PF04912 Dynamitin: Dynamitin 68.4 75 0.0016 30.6 11.2 56 147-205 332-387 (388)
145 TIGR00606 rad50 rad50. This fa 68.3 1.1E+02 0.0023 34.4 13.7 74 118-191 880-953 (1311)
146 PRK10698 phage shock protein P 68.3 65 0.0014 29.1 10.2 85 128-212 97-185 (222)
147 TIGR03185 DNA_S_dndD DNA sulfu 68.3 74 0.0016 32.7 11.8 33 172-204 428-460 (650)
148 cd07912 Tweety_N N-terminal do 68.0 36 0.00077 33.9 9.1 83 97-184 93-184 (418)
149 PLN03094 Substrate binding sub 67.9 30 0.00065 34.0 8.5 20 133-152 293-312 (370)
150 PF02646 RmuC: RmuC family; I 67.7 42 0.00092 31.4 9.2 37 124-160 4-40 (304)
151 smart00787 Spc7 Spc7 kinetocho 67.6 55 0.0012 31.3 10.0 45 133-177 147-191 (312)
152 PF00804 Syntaxin: Syntaxin; 67.6 48 0.001 24.6 10.0 34 124-157 5-38 (103)
153 PF08700 Vps51: Vps51/Vps67; 67.2 49 0.0011 24.6 8.3 62 142-206 24-85 (87)
154 PRK02224 chromosome segregatio 67.1 90 0.0019 32.8 12.3 11 32-42 37-47 (880)
155 KOG2391 Vacuolar sorting prote 66.9 1.2E+02 0.0026 30.0 12.2 68 115-183 218-285 (365)
156 PRK04098 sec-independent trans 66.8 26 0.00056 30.8 7.0 30 124-153 25-54 (158)
157 KOG4117 Heat shock factor bind 66.8 41 0.00089 26.0 7.2 44 121-164 11-54 (73)
158 PF04111 APG6: Autophagy prote 66.5 67 0.0015 30.5 10.3 68 140-207 67-134 (314)
159 PF07851 TMPIT: TMPIT-like pro 66.4 61 0.0013 31.5 10.1 50 135-184 9-58 (330)
160 PF01442 Apolipoprotein: Apoli 66.3 69 0.0015 25.9 11.8 8 152-159 90-97 (202)
161 PF05266 DUF724: Protein of un 66.0 98 0.0021 27.6 11.1 61 145-205 125-185 (190)
162 PF03908 Sec20: Sec20; InterP 65.7 60 0.0013 25.1 10.8 60 136-199 4-63 (92)
163 COG3165 Uncharacterized protei 65.7 25 0.00054 32.2 6.9 67 136-208 133-201 (204)
164 PF15450 DUF4631: Domain of un 65.6 82 0.0018 32.6 11.2 44 122-165 336-379 (531)
165 PF09403 FadA: Adhesion protei 65.3 84 0.0018 26.5 11.9 83 122-204 23-111 (126)
166 PF09304 Cortex-I_coil: Cortex 65.2 59 0.0013 27.0 8.4 39 121-159 11-52 (107)
167 PF05791 Bacillus_HBL: Bacillu 65.2 95 0.002 27.1 10.6 76 128-203 105-180 (184)
168 PF15188 CCDC-167: Coiled-coil 64.9 31 0.00068 27.4 6.6 28 130-161 2-29 (85)
169 cd00193 t_SNARE Soluble NSF (N 64.8 40 0.00087 22.7 7.1 46 151-196 6-51 (60)
170 PRK11091 aerobic respiration c 64.3 1.6E+02 0.0035 30.1 13.3 35 129-163 88-122 (779)
171 PF05531 NPV_P10: Nucleopolyhe 64.0 49 0.0011 25.8 7.3 15 128-142 13-27 (75)
172 PF06156 DUF972: Protein of un 63.4 47 0.001 27.1 7.6 31 121-151 3-33 (107)
173 PF10267 Tmemb_cc2: Predicted 63.1 1.1E+02 0.0024 30.5 11.4 76 128-206 221-318 (395)
174 cd07628 BAR_Atg24p The Bin/Amp 63.0 70 0.0015 27.9 9.1 76 148-223 8-84 (185)
175 PF00038 Filament: Intermediat 63.0 1.1E+02 0.0025 27.8 10.9 62 146-207 70-131 (312)
176 KOG4674 Uncharacterized conser 62.6 79 0.0017 37.2 11.5 32 176-207 855-886 (1822)
177 PF10018 Med4: Vitamin-D-recep 62.4 66 0.0014 28.1 8.8 51 135-185 11-63 (188)
178 PF05478 Prominin: Prominin; 62.4 1.2E+02 0.0025 32.4 12.1 28 196-223 736-763 (806)
179 PF06320 GCN5L1: GCN5-like pro 62.2 91 0.002 25.9 10.6 49 162-210 44-92 (121)
180 COG5185 HEC1 Protein involved 62.1 1.2E+02 0.0026 31.6 11.5 62 106-167 360-423 (622)
181 PF05384 DegS: Sensor protein 62.0 40 0.00086 29.5 7.3 47 153-199 8-54 (159)
182 PF10828 DUF2570: Protein of u 61.4 54 0.0012 26.4 7.5 14 98-111 12-25 (110)
183 PF12732 YtxH: YtxH-like prote 61.1 40 0.00086 25.0 6.3 18 145-162 27-44 (74)
184 PF07106 TBPIP: Tat binding pr 61.1 47 0.001 28.2 7.5 27 55-81 23-52 (169)
185 PF04740 LXG: LXG domain of WX 61.1 1.1E+02 0.0023 26.3 11.7 20 55-74 19-39 (204)
186 TIGR01843 type_I_hlyD type I s 60.8 1.4E+02 0.0031 27.7 13.4 16 54-69 82-97 (423)
187 PF05701 WEMBL: Weak chloropla 60.8 75 0.0016 32.1 10.0 37 167-203 311-347 (522)
188 PF04100 Vps53_N: Vps53-like, 60.7 1.6E+02 0.0034 28.8 11.9 107 126-233 25-159 (383)
189 PF10267 Tmemb_cc2: Predicted 60.7 1.1E+02 0.0025 30.4 11.0 63 141-203 223-293 (395)
190 TIGR00414 serS seryl-tRNA synt 60.1 86 0.0019 30.8 10.1 75 141-219 34-109 (418)
191 PF09730 BicD: Microtubule-ass 59.9 1.9E+02 0.0042 31.0 13.1 102 125-233 372-473 (717)
192 PF10234 Cluap1: Clusterin-ass 59.9 76 0.0017 30.0 9.3 91 125-216 123-213 (267)
193 PF02646 RmuC: RmuC family; I 59.8 59 0.0013 30.5 8.6 63 133-196 2-65 (304)
194 PHA00276 phage lambda Rz-like 59.7 55 0.0012 28.5 7.6 34 157-190 48-81 (144)
195 PLN02678 seryl-tRNA synthetase 59.7 45 0.00097 33.5 8.2 65 142-210 38-102 (448)
196 KOG3385 V-SNARE [Intracellular 59.7 31 0.00068 29.1 6.0 66 150-220 35-100 (118)
197 PRK10698 phage shock protein P 59.6 1.4E+02 0.0029 27.0 11.9 42 170-211 97-138 (222)
198 PF05667 DUF812: Protein of un 59.2 83 0.0018 32.8 10.2 29 178-206 504-532 (594)
199 PF06009 Laminin_II: Laminin D 59.2 3.1 6.7E-05 34.7 0.0 41 171-211 44-84 (138)
200 COG1283 NptA Na+/phosphate sym 59.2 1.2E+02 0.0026 31.4 11.2 97 120-223 336-448 (533)
201 KOG0996 Structural maintenance 59.1 62 0.0013 36.6 9.6 83 135-217 396-478 (1293)
202 PF03148 Tektin: Tektin family 58.9 1.8E+02 0.0039 28.2 12.4 88 115-202 201-295 (384)
203 PF10602 RPN7: 26S proteasome 58.8 40 0.00087 29.1 6.8 58 141-200 4-61 (177)
204 PF10241 KxDL: Uncharacterized 58.6 85 0.0019 24.4 9.0 54 131-184 23-76 (88)
205 PF05701 WEMBL: Weak chloropla 58.4 1.5E+02 0.0031 30.1 11.6 42 166-207 282-323 (522)
206 PF11945 WASH_WAHD: WAHD domai 58.0 58 0.0013 31.1 8.2 54 126-179 18-71 (297)
207 TIGR00634 recN DNA repair prot 58.0 89 0.0019 31.6 10.0 43 115-157 251-297 (563)
208 cd07667 BAR_SNX30 The Bin/Amph 57.9 1.1E+02 0.0023 28.6 9.7 76 148-223 55-130 (240)
209 TIGR00634 recN DNA repair prot 57.8 80 0.0017 31.9 9.7 46 122-167 269-317 (563)
210 TIGR02338 gimC_beta prefoldin, 57.6 35 0.00077 27.2 5.9 21 117-138 59-79 (110)
211 PRK05431 seryl-tRNA synthetase 57.5 66 0.0014 31.7 8.8 68 142-213 33-100 (425)
212 cd07622 BAR_SNX4 The Bin/Amphi 57.5 1.4E+02 0.0031 26.6 10.8 69 108-188 58-126 (201)
213 KOG0995 Centromere-associated 57.4 2.3E+02 0.0049 29.9 12.8 102 113-218 215-336 (581)
214 PF08172 CASP_C: CASP C termin 57.3 48 0.001 30.7 7.4 56 136-191 78-133 (248)
215 COG1463 Ttg2C ABC-type transpo 57.3 1.3E+02 0.0029 28.6 10.7 86 131-216 216-301 (359)
216 PF02994 Transposase_22: L1 tr 57.3 18 0.0004 35.0 4.9 42 172-213 151-192 (370)
217 PF03670 UPF0184: Uncharacteri 57.3 51 0.0011 26.2 6.5 47 128-178 28-74 (83)
218 COG4026 Uncharacterized protei 57.3 64 0.0014 30.5 8.2 44 176-219 153-196 (290)
219 PF03114 BAR: BAR domain; Int 56.9 94 0.002 25.8 8.6 20 54-73 27-47 (229)
220 COG2433 Uncharacterized conser 56.8 88 0.0019 33.1 9.8 68 134-201 419-489 (652)
221 PF05667 DUF812: Protein of un 56.8 1.1E+02 0.0025 31.8 10.7 111 122-232 397-509 (594)
222 PHA03395 p10 fibrous body prot 56.8 40 0.00088 27.1 5.9 10 153-162 13-22 (87)
223 KOG0804 Cytoplasmic Zn-finger 56.3 1.5E+02 0.0032 30.4 11.1 19 140-158 347-365 (493)
224 PF06156 DUF972: Protein of un 56.3 29 0.00063 28.4 5.2 55 146-200 3-57 (107)
225 TIGR02231 conserved hypothetic 56.3 1.5E+02 0.0032 29.6 11.2 37 174-210 126-162 (525)
226 TIGR02132 phaR_Bmeg polyhydrox 56.3 69 0.0015 29.0 7.9 46 146-191 81-133 (189)
227 smart00502 BBC B-Box C-termina 55.9 89 0.0019 23.8 11.7 38 124-161 19-56 (127)
228 PF07888 CALCOCO1: Calcium bin 55.6 2.4E+02 0.0051 29.5 12.6 49 168-216 279-327 (546)
229 PF01920 Prefoldin_2: Prefoldi 55.6 50 0.0011 25.1 6.2 36 144-179 62-97 (106)
230 COG3352 FlaC Putative archaeal 55.5 94 0.002 27.5 8.4 71 120-191 70-141 (157)
231 TIGR00606 rad50 rad50. This fa 55.4 2.3E+02 0.0049 31.9 13.3 39 181-219 986-1024(1311)
232 KOG4593 Mitotic checkpoint pro 55.4 3E+02 0.0065 29.7 14.2 98 122-219 115-212 (716)
233 COG1730 GIM5 Predicted prefold 55.1 30 0.00066 29.8 5.4 44 118-161 86-132 (145)
234 PRK13729 conjugal transfer pil 55.0 35 0.00077 34.7 6.6 50 160-209 71-120 (475)
235 PF15361 RIC3: Resistance to i 54.8 5.2 0.00011 34.5 0.6 28 82-109 75-103 (152)
236 KOG0977 Nuclear envelope prote 54.8 2.7E+02 0.0059 29.0 14.1 45 149-193 146-190 (546)
237 PF06320 GCN5L1: GCN5-like pro 54.8 1.2E+02 0.0027 25.1 10.6 51 144-195 54-108 (121)
238 PRK10803 tol-pal system protei 54.8 59 0.0013 30.0 7.6 58 134-191 44-101 (263)
239 COG1340 Uncharacterized archae 54.6 1.5E+02 0.0033 28.5 10.4 69 135-203 53-124 (294)
240 cd07621 BAR_SNX5_6 The Bin/Amp 54.6 1E+02 0.0023 28.1 9.0 77 115-194 48-125 (219)
241 PF06148 COG2: COG (conserved 54.4 19 0.00041 29.4 3.9 47 123-169 66-112 (133)
242 cd00179 SynN Syntaxin N-termin 54.4 1.2E+02 0.0025 24.6 9.6 20 126-145 6-25 (151)
243 PRK15048 methyl-accepting chem 54.3 2.3E+02 0.0049 28.0 14.3 66 140-205 252-317 (553)
244 COG1256 FlgK Flagellar hook-as 54.3 1E+02 0.0022 31.8 9.8 83 119-205 131-213 (552)
245 TIGR00833 actII Transport prot 54.3 1.6E+02 0.0036 31.6 11.7 40 184-223 605-644 (910)
246 PF06160 EzrA: Septation ring 54.0 1.7E+02 0.0038 29.8 11.4 107 115-221 288-407 (560)
247 cd07667 BAR_SNX30 The Bin/Amph 54.0 1.9E+02 0.0041 27.0 12.9 31 122-152 103-133 (240)
248 TIGR02550 flagell_flgL flagell 53.9 1.7E+02 0.0037 26.5 13.7 21 54-74 105-126 (306)
249 COG3074 Uncharacterized protei 53.0 1.1E+02 0.0024 24.0 8.5 58 153-210 6-63 (79)
250 PF12777 MT: Microtubule-bindi 53.0 62 0.0013 30.7 7.6 104 123-234 218-331 (344)
251 PF12761 End3: Actin cytoskele 52.9 1.1E+02 0.0024 27.8 8.8 28 176-203 157-184 (195)
252 PF04124 Dor1: Dor1-like famil 52.7 1.9E+02 0.0041 27.3 10.7 70 139-208 16-89 (338)
253 PF15397 DUF4618: Domain of un 52.5 2.1E+02 0.0045 27.0 11.5 47 132-178 62-108 (258)
254 TIGR01000 bacteriocin_acc bact 52.4 1.6E+02 0.0036 28.7 10.6 49 18-72 67-124 (457)
255 PF06009 Laminin_II: Laminin D 52.3 4.7 0.0001 33.6 0.0 67 150-216 16-82 (138)
256 PF02403 Seryl_tRNA_N: Seryl-t 52.2 1.1E+02 0.0024 23.8 9.6 34 187-220 68-101 (108)
257 PRK10778 dksA RNA polymerase-b 52.2 22 0.00048 30.6 4.1 110 107-227 6-121 (151)
258 PRK01919 tatB sec-independent 52.2 1.7E+02 0.0038 26.1 9.9 51 122-177 23-73 (169)
259 TIGR00985 3a0801s04tom mitocho 52.0 89 0.0019 27.1 7.7 14 211-224 106-119 (148)
260 PF12352 V-SNARE_C: Snare regi 51.9 85 0.0018 22.4 7.0 33 159-191 16-48 (66)
261 PF01920 Prefoldin_2: Prefoldi 51.6 1E+02 0.0023 23.3 9.8 23 141-163 9-31 (106)
262 PF10280 Med11: Mediator compl 51.3 1.3E+02 0.0029 24.5 8.6 65 151-225 6-77 (117)
263 PF09738 DUF2051: Double stran 51.3 87 0.0019 30.0 8.2 76 144-221 105-180 (302)
264 TIGR02976 phageshock_pspB phag 51.2 13 0.00029 28.7 2.3 43 117-162 25-67 (75)
265 PRK15396 murein lipoprotein; P 51.1 75 0.0016 24.8 6.5 36 149-184 30-65 (78)
266 KOG1961 Vacuolar sorting prote 51.0 78 0.0017 33.5 8.4 55 149-203 73-127 (683)
267 COG4026 Uncharacterized protei 50.9 2.3E+02 0.0049 27.0 11.3 8 121-128 109-116 (290)
268 COG0598 CorA Mg2+ and Co2+ tra 50.9 2.1E+02 0.0047 26.7 10.9 48 115-162 143-191 (322)
269 TIGR02231 conserved hypothetic 50.7 1.4E+02 0.0031 29.7 10.1 84 124-207 69-173 (525)
270 TIGR00833 actII Transport prot 50.6 2.5E+02 0.0054 30.3 12.4 118 54-189 520-638 (910)
271 PF05384 DegS: Sensor protein 50.6 1E+02 0.0022 26.9 8.0 45 147-191 101-145 (159)
272 PF07957 DUF3294: Protein of u 50.4 64 0.0014 29.8 6.9 34 145-178 5-38 (216)
273 PF01544 CorA: CorA-like Mg2+ 50.4 1.8E+02 0.0038 25.5 10.9 44 116-159 115-159 (292)
274 KOG0240 Kinesin (SMY1 subfamil 50.2 3.4E+02 0.0073 28.8 13.4 63 115-177 385-454 (607)
275 cd07596 BAR_SNX The Bin/Amphip 49.7 1.5E+02 0.0034 24.7 13.5 97 122-221 60-173 (218)
276 PRK12805 flagellin; Provisiona 49.6 2.2E+02 0.0047 26.4 11.4 30 53-82 105-138 (287)
277 KOG0860 Synaptobrevin/VAMP-lik 49.4 1.6E+02 0.0035 24.8 9.4 70 150-219 28-97 (116)
278 COG0598 CorA Mg2+ and Co2+ tra 48.8 1.8E+02 0.0039 27.2 9.9 71 136-206 183-254 (322)
279 PF08580 KAR9: Yeast cortical 48.7 79 0.0017 33.4 8.2 45 111-155 12-58 (683)
280 PF04380 BMFP: Membrane fusoge 48.7 1.2E+02 0.0026 23.2 8.3 24 185-208 49-72 (79)
281 PF15079 DUF4546: Domain of un 48.7 1.4E+02 0.0031 27.0 8.6 22 225-246 109-134 (205)
282 PHA03395 p10 fibrous body prot 48.6 80 0.0017 25.4 6.4 21 126-146 11-31 (87)
283 PF04102 SlyX: SlyX; InterPro 48.4 90 0.0019 23.2 6.4 46 147-192 7-52 (69)
284 PF10212 TTKRSYEDQ: Predicted 48.4 1.5E+02 0.0032 30.7 9.8 88 145-232 414-505 (518)
285 KOG0978 E3 ubiquitin ligase in 48.2 2E+02 0.0044 30.8 11.0 81 123-203 535-618 (698)
286 cd07630 BAR_SNX_like The Bin/A 48.0 1.8E+02 0.004 25.9 9.3 81 115-195 28-109 (198)
287 PF06008 Laminin_I: Laminin Do 47.9 1.8E+02 0.004 26.3 9.5 29 120-148 43-74 (264)
288 PF04108 APG17: Autophagy prot 47.8 2.8E+02 0.0061 27.2 13.5 32 113-144 197-228 (412)
289 KOG0996 Structural maintenance 47.7 1.2E+02 0.0026 34.5 9.5 79 141-220 960-1039(1293)
290 PRK00846 hypothetical protein; 47.5 1.3E+02 0.0029 23.4 7.4 49 143-191 12-60 (77)
291 KOG2196 Nuclear porin [Nuclear 47.5 1.3E+02 0.0029 28.4 8.6 71 139-209 84-157 (254)
292 KOG4603 TBP-1 interacting prot 47.4 95 0.002 28.2 7.3 60 148-207 83-144 (201)
293 PF15290 Syntaphilin: Golgi-lo 47.3 1.1E+02 0.0024 29.6 8.2 28 176-203 114-141 (305)
294 COG5143 SNC1 Synaptobrevin/VAM 47.3 1E+02 0.0022 28.0 7.6 56 131-186 127-185 (190)
295 KOG0804 Cytoplasmic Zn-finger 47.2 2.8E+02 0.0062 28.5 11.4 30 134-163 365-394 (493)
296 PRK15422 septal ring assembly 47.2 1.4E+02 0.0031 23.6 8.5 51 155-205 8-58 (79)
297 KOG0976 Rho/Rac1-interacting s 47.2 3.8E+02 0.0081 30.0 12.8 95 128-222 279-373 (1265)
298 PRK11085 magnesium/nickel/coba 46.8 2.4E+02 0.0052 26.9 10.5 22 122-143 142-163 (316)
299 cd07666 BAR_SNX7 The Bin/Amphi 46.8 2.4E+02 0.0053 26.2 10.7 80 123-205 107-196 (243)
300 PF06825 HSBP1: Heat shock fac 46.6 66 0.0014 23.6 5.2 31 134-164 11-41 (54)
301 TIGR00414 serS seryl-tRNA synt 46.2 1.1E+02 0.0024 30.1 8.4 16 140-155 47-62 (418)
302 PF09748 Med10: Transcription 46.2 1.7E+02 0.0037 24.3 9.1 45 125-169 2-51 (128)
303 PRK13169 DNA replication intia 46.1 1.3E+02 0.0028 24.9 7.5 32 121-152 3-34 (110)
304 KOG2629 Peroxisomal membrane a 45.9 1.1E+02 0.0025 29.5 8.1 39 37-78 4-48 (300)
305 PRK01156 chromosome segregatio 45.9 2.9E+02 0.0063 29.3 11.9 26 134-159 163-188 (895)
306 PRK04654 sec-independent trans 45.9 1.9E+02 0.0041 26.8 9.2 33 122-154 23-55 (214)
307 PF00957 Synaptobrevin: Synapt 45.7 1.3E+02 0.0028 22.7 10.0 21 130-150 7-27 (89)
308 KOG0240 Kinesin (SMY1 subfamil 45.6 2.9E+02 0.0064 29.2 11.4 87 121-211 416-502 (607)
309 PF15070 GOLGA2L5: Putative go 45.5 3.9E+02 0.0084 28.1 13.3 21 143-163 42-62 (617)
310 PRK11032 hypothetical protein; 45.5 80 0.0017 27.7 6.5 50 135-187 12-65 (160)
311 PF05802 EspB: Enterobacterial 45.4 2.6E+02 0.0056 27.2 10.3 60 145-204 148-207 (317)
312 KOG3091 Nuclear pore complex, 45.0 1E+02 0.0023 31.7 8.1 66 147-212 337-402 (508)
313 COG4717 Uncharacterized conser 44.9 3.2E+02 0.007 30.4 12.0 115 118-235 735-861 (984)
314 PF08614 ATG16: Autophagy prot 44.8 2E+02 0.0044 25.0 9.0 51 141-191 120-170 (194)
315 PF04012 PspA_IM30: PspA/IM30 44.5 2.2E+02 0.0047 24.9 12.3 41 170-210 96-136 (221)
316 PF04728 LPP: Lipoprotein leuc 44.5 1.3E+02 0.0028 22.3 7.2 12 180-191 18-29 (56)
317 PF04111 APG6: Autophagy prote 44.4 2.9E+02 0.0062 26.3 11.6 80 140-219 53-132 (314)
318 cd07651 F-BAR_PombeCdc15_like 44.4 2.3E+02 0.005 25.2 13.7 38 114-151 95-132 (236)
319 KOG0977 Nuclear envelope prote 44.3 2.8E+02 0.006 29.0 11.1 64 171-234 119-185 (546)
320 PRK09343 prefoldin subunit bet 44.3 85 0.0018 25.7 6.2 19 121-139 66-84 (121)
321 PF13094 CENP-Q: CENP-Q, a CEN 44.3 1.6E+02 0.0034 24.8 8.0 38 171-208 47-84 (160)
322 PRK06696 uridine kinase; Valid 44.2 23 0.00049 31.0 3.0 34 59-92 4-39 (223)
323 KOG0239 Kinesin (KAR3 subfamil 44.2 4.2E+02 0.0091 28.2 12.8 25 121-145 177-201 (670)
324 cd07625 BAR_Vps17p The Bin/Amp 43.9 2.6E+02 0.0057 25.7 10.8 72 117-194 44-120 (230)
325 COG5124 Protein predicted to b 43.8 2.6E+02 0.0056 25.6 10.5 42 111-155 70-111 (209)
326 KOG2264 Exostosin EXT1L [Signa 43.8 1.6E+02 0.0034 31.6 9.2 44 143-186 99-142 (907)
327 PF07798 DUF1640: Protein of u 43.8 2.1E+02 0.0046 24.6 11.6 13 40-52 6-18 (177)
328 PF10174 Cast: RIM-binding pro 43.6 3E+02 0.0065 29.8 11.6 83 124-206 313-405 (775)
329 PF14257 DUF4349: Domain of un 43.6 1.1E+02 0.0025 27.5 7.5 29 169-197 166-194 (262)
330 KOG0161 Myosin class II heavy 43.4 3.8E+02 0.0081 32.2 13.0 49 115-163 897-948 (1930)
331 PF04778 LMP: LMP repeated reg 43.3 2.4E+02 0.0051 25.0 9.1 81 132-212 6-95 (157)
332 PF02181 FH2: Formin Homology 43.3 1.8E+02 0.0039 27.3 9.0 41 187-227 310-350 (370)
333 PRK08073 flgL flagellar hook-a 43.3 2.7E+02 0.0058 25.6 13.8 28 54-81 106-136 (287)
334 PLN02320 seryl-tRNA synthetase 43.2 1.4E+02 0.0031 30.6 8.8 95 107-210 62-161 (502)
335 KOG4559 Uncharacterized conser 43.2 97 0.0021 25.9 6.3 50 122-171 57-106 (120)
336 TIGR02680 conserved hypothetic 43.1 5.1E+02 0.011 29.6 13.7 42 167-208 923-964 (1353)
337 TIGR02492 flgK_ends flagellar 43.1 2.6E+02 0.0057 26.2 10.0 45 119-163 127-171 (322)
338 cd00890 Prefoldin Prefoldin is 43.0 1.6E+02 0.0035 23.1 11.7 11 99-109 73-83 (129)
339 KOG2196 Nuclear porin [Nuclear 42.9 1.4E+02 0.0031 28.2 8.1 35 128-162 125-159 (254)
340 PRK10869 recombination and rep 42.8 1.4E+02 0.0031 30.4 8.8 109 112-224 241-365 (553)
341 PF06248 Zw10: Centromere/kine 42.7 3.1E+02 0.0067 27.9 11.1 74 125-199 28-103 (593)
342 COG1463 Ttg2C ABC-type transpo 42.7 2.5E+02 0.0054 26.8 10.0 10 215-224 269-278 (359)
343 KOG0809 SNARE protein TLG2/Syn 42.6 2.5E+02 0.0054 27.3 9.8 135 59-223 99-273 (305)
344 PF07106 TBPIP: Tat binding pr 42.3 93 0.002 26.3 6.4 23 184-206 114-136 (169)
345 PF02520 DUF148: Domain of unk 42.2 1.7E+02 0.0037 23.1 8.2 28 124-151 45-72 (113)
346 KOG1029 Endocytic adaptor prot 42.2 81 0.0017 34.6 7.0 43 131-173 438-480 (1118)
347 PRK10361 DNA recombination pro 41.9 4E+02 0.0087 27.3 12.9 15 136-150 39-53 (475)
348 PRK08913 flgL flagellar hook-a 41.7 2.8E+02 0.006 25.3 14.9 21 53-73 105-126 (301)
349 COG5665 NOT5 CCR4-NOT transcri 41.7 83 0.0018 31.9 6.7 52 124-181 117-174 (548)
350 COG1579 Zn-ribbon protein, pos 41.7 3E+02 0.0065 25.7 12.5 16 236-251 181-196 (239)
351 COG0497 RecN ATPase involved i 41.6 1.4E+02 0.0029 31.2 8.4 113 112-224 242-366 (557)
352 PF04977 DivIC: Septum formati 41.6 1.1E+02 0.0024 22.0 5.9 29 148-176 21-49 (80)
353 KOG2211 Predicted Golgi transp 41.6 1.9E+02 0.0041 31.3 9.5 84 108-196 53-145 (797)
354 PF04012 PspA_IM30: PspA/IM30 41.6 2.4E+02 0.0052 24.6 9.3 38 124-161 96-136 (221)
355 PF06419 COG6: Conserved oligo 41.4 1.7E+02 0.0037 30.3 9.2 56 144-205 16-71 (618)
356 cd07624 BAR_SNX7_30 The Bin/Am 41.3 2.3E+02 0.005 24.8 8.9 72 148-219 18-89 (200)
357 PF03233 Cauli_AT: Aphid trans 41.3 1.9E+02 0.0041 25.7 8.2 20 190-209 139-158 (163)
358 PF10392 COG5: Golgi transport 41.2 2E+02 0.0044 23.6 11.8 30 126-155 26-55 (132)
359 PRK15396 murein lipoprotein; P 41.0 1.1E+02 0.0024 23.9 6.1 7 211-217 64-70 (78)
360 KOG0796 Spliceosome subunit [R 41.0 3.3E+02 0.0072 26.6 10.5 96 122-224 86-193 (319)
361 PF06825 HSBP1: Heat shock fac 41.0 1.2E+02 0.0025 22.3 5.8 35 129-163 13-47 (54)
362 PF02520 DUF148: Domain of unk 40.9 1.7E+02 0.0036 23.2 7.3 17 118-134 28-44 (113)
363 COG0497 RecN ATPase involved i 40.9 1.8E+02 0.0039 30.4 9.2 97 123-219 266-368 (557)
364 PF10191 COG7: Golgi complex c 40.8 2.6E+02 0.0057 29.8 10.6 64 126-189 38-101 (766)
365 KOG2991 Splicing regulator [RN 40.7 1.6E+02 0.0035 28.4 8.2 81 150-230 235-315 (330)
366 KOG4674 Uncharacterized conser 40.7 2.5E+02 0.0054 33.4 11.0 38 127-164 781-818 (1822)
367 PLN03094 Substrate binding sub 40.6 1.1E+02 0.0023 30.2 7.2 37 132-168 306-344 (370)
368 KOG2180 Late Golgi protein sor 40.5 1.4E+02 0.003 32.4 8.4 76 136-221 32-107 (793)
369 PF01601 Corona_S2: Coronaviru 40.4 1E+02 0.0023 32.4 7.4 89 123-232 256-347 (610)
370 PF12761 End3: Actin cytoskele 40.4 1.2E+02 0.0027 27.5 7.1 52 145-196 133-184 (195)
371 PF05508 Ran-binding: RanGTP-b 40.4 1.9E+02 0.004 28.1 8.6 92 117-208 14-137 (302)
372 PRK11020 hypothetical protein; 40.1 1.2E+02 0.0026 25.7 6.4 22 191-212 36-57 (118)
373 COG5185 HEC1 Protein involved 40.1 3.6E+02 0.0078 28.2 10.9 38 14-52 116-153 (622)
374 KOG2391 Vacuolar sorting prote 40.0 2E+02 0.0044 28.5 8.9 15 32-46 122-136 (365)
375 PRK10807 paraquat-inducible pr 39.9 1.1E+02 0.0025 31.2 7.6 39 123-161 421-460 (547)
376 PF00957 Synaptobrevin: Synapt 39.9 1.6E+02 0.0035 22.2 8.7 26 134-159 4-29 (89)
377 PF04906 Tweety: Tweety; Inte 39.9 3.1E+02 0.0066 27.0 10.3 85 98-184 74-161 (406)
378 PRK09110 flagellar motor prote 39.8 2.1E+02 0.0045 27.1 8.8 88 97-186 10-106 (283)
379 PRK13169 DNA replication intia 39.8 73 0.0016 26.3 5.1 53 146-198 3-55 (110)
380 KOG0994 Extracellular matrix g 39.7 1.7E+02 0.0036 33.8 9.1 69 135-207 1227-1295(1758)
381 cd07597 BAR_SNX8 The Bin/Amphi 39.7 2.8E+02 0.0061 25.2 9.4 80 122-208 87-167 (246)
382 PRK12803 flagellin; Provisiona 39.7 3.6E+02 0.0078 26.1 12.6 30 53-82 105-138 (335)
383 KOG0976 Rho/Rac1-interacting s 39.6 4E+02 0.0086 29.8 11.6 76 122-204 109-187 (1265)
384 PRK04098 sec-independent trans 39.5 2.7E+02 0.0058 24.6 9.5 53 120-172 39-95 (158)
385 PF03961 DUF342: Protein of un 39.5 1.8E+02 0.0039 28.6 8.7 11 74-85 285-295 (451)
386 TIGR00383 corA magnesium Mg(2+ 39.4 3E+02 0.0065 25.1 10.9 85 123-207 146-244 (318)
387 PHA03386 P10 fibrous body prot 39.3 1E+02 0.0022 25.1 5.8 23 126-148 12-34 (94)
388 TIGR03007 pepcterm_ChnLen poly 39.3 1.8E+02 0.004 28.3 8.7 78 121-202 156-234 (498)
389 PF10211 Ax_dynein_light: Axon 39.1 2.7E+02 0.0059 24.5 11.2 22 183-204 167-188 (189)
390 KOG0963 Transcription factor/C 38.9 3.8E+02 0.0083 28.5 11.2 83 135-217 180-273 (629)
391 PF09763 Sec3_C: Exocyst compl 38.8 2.1E+02 0.0045 29.7 9.4 31 154-184 40-70 (701)
392 PF05055 DUF677: Protein of un 38.5 2.2E+02 0.0049 27.6 9.0 21 187-207 296-316 (336)
393 KOG0995 Centromere-associated 38.3 2E+02 0.0044 30.2 9.0 55 149-203 313-370 (581)
394 PRK10361 DNA recombination pro 38.3 4.6E+02 0.0099 26.9 13.9 44 202-245 174-221 (475)
395 PF11460 DUF3007: Protein of u 37.7 27 0.00059 28.8 2.3 23 145-169 79-101 (104)
396 PF07160 DUF1395: Protein of u 37.7 1.5E+02 0.0032 27.3 7.3 27 177-203 20-46 (243)
397 PLN02678 seryl-tRNA synthetase 37.7 4E+02 0.0086 26.9 10.9 16 196-211 81-96 (448)
398 PF06013 WXG100: Proteins of 1 37.6 1.4E+02 0.0031 20.8 10.4 25 132-156 13-37 (86)
399 PF14182 YgaB: YgaB-like prote 37.5 2.1E+02 0.0045 22.7 8.4 47 151-197 14-65 (79)
400 cd01406 SIR2-like Sir2-like: P 37.1 44 0.00095 29.5 3.7 33 10-47 1-33 (242)
401 PF04108 APG17: Autophagy prot 37.0 3.9E+02 0.0085 26.2 10.6 23 212-234 288-310 (412)
402 TIGR02977 phageshock_pspA phag 37.0 3E+02 0.0066 24.4 10.5 89 120-212 93-185 (219)
403 PLN02320 seryl-tRNA synthetase 36.9 1.5E+02 0.0033 30.4 7.9 51 140-190 110-162 (502)
404 PF06705 SF-assemblin: SF-asse 36.9 3.2E+02 0.0068 24.6 10.6 17 53-69 34-50 (247)
405 PF07544 Med9: RNA polymerase 36.9 85 0.0018 24.2 4.9 54 131-185 26-79 (83)
406 KOG0018 Structural maintenance 36.9 3E+02 0.0065 31.1 10.5 34 113-151 668-701 (1141)
407 PF06705 SF-assemblin: SF-asse 36.9 3.2E+02 0.0069 24.6 14.0 35 122-156 88-122 (247)
408 cd01107 HTH_BmrR Helix-Turn-He 36.6 81 0.0018 24.9 4.8 15 107-121 55-69 (108)
409 COG0172 SerS Seryl-tRNA synthe 36.6 3.5E+02 0.0075 27.4 10.2 64 142-208 34-97 (429)
410 PF06013 WXG100: Proteins of 1 36.4 1.5E+02 0.0032 20.7 9.8 27 135-161 9-35 (86)
411 PRK07739 flgK flagellar hook-a 36.4 3E+02 0.0066 27.7 9.9 42 119-160 139-180 (507)
412 cd07647 F-BAR_PSTPIP The F-BAR 36.4 3.2E+02 0.0069 24.5 11.7 41 116-156 96-136 (239)
413 KOG3595 Dyneins, heavy chain [ 36.1 4.3E+02 0.0093 30.3 11.9 21 112-132 893-913 (1395)
414 cd00024 CHROMO Chromatin organ 36.0 28 0.0006 23.3 1.8 24 104-127 22-45 (55)
415 PRK10869 recombination and rep 36.0 2.8E+02 0.0061 28.3 9.7 46 122-167 264-312 (553)
416 PF10334 DUF2421: Protein of u 36.0 3.2E+02 0.0068 24.3 11.3 114 121-234 11-155 (229)
417 COG4980 GvpP Gas vesicle prote 36.0 2.6E+02 0.0057 23.4 9.7 24 178-201 89-112 (115)
418 KOG2911 Uncharacterized conser 36.0 4.4E+02 0.0096 26.9 10.7 87 123-209 237-357 (439)
419 PRK12687 flagellin; Reviewed 35.9 3.8E+02 0.0083 25.3 14.7 29 53-81 107-139 (311)
420 PF14193 DUF4315: Domain of un 35.8 90 0.002 24.6 4.9 53 182-234 4-57 (83)
421 PRK09458 pspB phage shock prot 35.5 26 0.00057 27.4 1.8 44 116-162 24-67 (75)
422 PF13747 DUF4164: Domain of un 35.5 2.2E+02 0.0048 22.4 10.2 49 169-217 36-84 (89)
423 PF10146 zf-C4H2: Zinc finger- 35.4 3.6E+02 0.0078 24.8 12.5 22 179-200 53-74 (230)
424 COG1511 Predicted membrane pro 35.4 5.3E+02 0.011 27.6 11.8 105 120-224 145-258 (780)
425 PRK06665 flgK flagellar hook-a 35.2 3.1E+02 0.0067 28.5 10.0 41 119-159 139-179 (627)
426 PF09278 MerR-DNA-bind: MerR, 35.2 1.4E+02 0.003 20.9 5.4 27 143-169 35-61 (65)
427 KOG4677 Golgi integral membran 35.1 4E+02 0.0087 27.7 10.3 49 106-159 157-205 (554)
428 PRK11020 hypothetical protein; 34.8 40 0.00086 28.5 2.9 50 30-79 9-76 (118)
429 KOG0994 Extracellular matrix g 34.7 5.7E+02 0.012 29.8 12.1 31 117-147 1534-1577(1758)
430 PF02346 Vac_Fusion: Chordopox 34.7 1.6E+02 0.0036 21.8 5.8 48 156-203 6-53 (57)
431 PF10158 LOH1CR12: Tumour supp 34.7 2.8E+02 0.0061 23.4 11.0 28 174-201 89-116 (131)
432 PF10475 DUF2450: Protein of u 34.6 3.7E+02 0.0081 24.8 11.9 32 152-183 68-99 (291)
433 PF05164 ZapA: Cell division p 34.6 1.3E+02 0.0029 22.2 5.5 14 148-161 76-89 (89)
434 PRK00409 recombination and DNA 34.5 2.4E+02 0.0052 30.2 9.2 132 31-170 128-275 (782)
435 PRK09039 hypothetical protein; 34.4 4.3E+02 0.0093 25.4 13.9 54 166-219 124-177 (343)
436 PTZ00446 vacuolar sorting prot 34.4 2.8E+02 0.006 25.0 8.3 15 55-69 43-57 (191)
437 PF08693 SKG6: Transmembrane a 34.4 22 0.00047 24.7 1.1 20 90-109 16-37 (40)
438 PF00429 TLV_coat: ENV polypro 34.4 1.1E+02 0.0024 31.5 6.6 76 159-234 422-497 (561)
439 PF05911 DUF869: Plant protein 34.4 5E+02 0.011 28.2 11.5 89 115-207 599-687 (769)
440 TIGR02977 phageshock_pspA phag 34.3 3.4E+02 0.0073 24.2 10.8 38 146-183 94-131 (219)
441 PRK07191 flgK flagellar hook-a 34.2 3.5E+02 0.0076 26.8 9.8 37 119-155 127-163 (456)
442 PF11887 DUF3407: Protein of u 34.2 3.8E+02 0.0082 24.7 11.1 19 206-224 115-133 (267)
443 PF12329 TMF_DNA_bd: TATA elem 34.1 2.1E+02 0.0045 21.7 8.8 25 159-183 27-51 (74)
444 PF07851 TMPIT: TMPIT-like pro 34.1 2.8E+02 0.0062 27.1 8.9 30 120-149 19-48 (330)
445 PRK09303 adaptive-response sen 34.0 1.2E+02 0.0026 28.4 6.3 20 165-184 157-176 (380)
446 PF15619 Lebercilin: Ciliary p 34.0 3.4E+02 0.0075 24.2 9.7 33 172-204 157-189 (194)
447 PHA02607 wac fibritin; Provisi 33.8 1.9E+02 0.004 29.6 7.8 107 122-228 41-155 (454)
448 PF04065 Not3: Not1 N-terminal 33.8 1.6E+02 0.0035 27.2 6.9 23 121-143 124-146 (233)
449 TIGR01834 PHA_synth_III_E poly 33.6 2.9E+02 0.0063 26.9 8.8 94 113-206 195-309 (320)
450 KOG0964 Structural maintenance 33.5 6.3E+02 0.014 28.8 12.1 100 120-219 665-767 (1200)
451 PHA01750 hypothetical protein 33.4 1.3E+02 0.0028 23.4 5.2 12 151-162 42-53 (75)
452 KOG4460 Nuclear pore complex, 33.4 6.3E+02 0.014 27.0 13.0 74 151-224 574-647 (741)
453 PLN03184 chloroplast Hsp70; Pr 33.3 4E+02 0.0086 27.9 10.4 69 137-207 559-632 (673)
454 PF13514 AAA_27: AAA domain 33.3 7E+02 0.015 27.5 14.8 110 124-233 616-727 (1111)
455 PLN03226 serine hydroxymethylt 33.3 4.7E+02 0.01 26.1 10.6 31 55-85 312-343 (475)
456 PF03938 OmpH: Outer membrane 33.2 2.7E+02 0.0059 22.7 9.9 27 164-190 79-105 (158)
457 KOG3990 Uncharacterized conser 33.2 1.3E+02 0.0027 29.0 6.1 56 136-203 228-284 (305)
458 TIGR01010 BexC_CtrB_KpsE polys 33.1 4.2E+02 0.0091 24.9 11.5 85 120-204 164-260 (362)
459 PRK05431 seryl-tRNA synthetase 33.1 1.9E+02 0.0042 28.5 7.8 23 167-189 75-97 (425)
460 PF12072 DUF3552: Domain of un 33.0 3.4E+02 0.0074 23.9 13.1 121 91-221 6-134 (201)
461 PF12329 TMF_DNA_bd: TATA elem 33.0 2.2E+02 0.0047 21.6 7.5 66 156-221 3-68 (74)
462 PF05266 DUF724: Protein of un 33.0 3.6E+02 0.0077 24.1 10.8 49 143-191 130-178 (190)
463 PF05739 SNARE: SNARE domain; 32.9 1.7E+02 0.0037 20.3 8.3 39 152-190 19-57 (63)
464 PRK00290 dnaK molecular chaper 32.8 4E+02 0.0087 27.3 10.2 70 138-209 521-595 (627)
465 KOG0946 ER-Golgi vesicle-tethe 32.7 1.3E+02 0.0028 33.1 6.9 81 133-213 809-889 (970)
466 KOG3202 SNARE protein TLG1/Syn 32.6 2.7E+02 0.0059 25.8 8.2 40 134-177 153-192 (235)
467 smart00503 SynN Syntaxin N-ter 32.5 2.3E+02 0.0049 21.7 9.6 26 126-151 8-33 (117)
468 PTZ00446 vacuolar sorting prot 32.5 3E+02 0.0065 24.8 8.2 28 141-168 31-58 (191)
469 PRK08027 flgL flagellar hook-a 32.5 4.3E+02 0.0093 24.8 13.0 22 53-74 105-127 (317)
470 PHA03332 membrane glycoprotein 32.3 2.3E+02 0.0051 32.1 8.7 37 166-202 924-964 (1328)
471 PRK09546 zntB zinc transporter 32.3 4E+02 0.0088 24.7 9.4 28 175-202 225-252 (324)
472 PF04871 Uso1_p115_C: Uso1 / p 32.1 3.1E+02 0.0067 23.1 10.4 69 136-204 26-102 (136)
473 PRK01156 chromosome segregatio 32.0 3.8E+02 0.0083 28.4 10.2 22 184-205 414-435 (895)
474 PHA03332 membrane glycoprotein 32.0 8.1E+02 0.017 28.2 12.6 51 153-203 893-947 (1328)
475 PRK09973 putative outer membra 32.0 2.1E+02 0.0045 22.9 6.4 49 159-211 25-73 (85)
476 TIGR03752 conj_TIGR03752 integ 32.0 5.6E+02 0.012 26.4 10.8 83 120-205 60-142 (472)
477 cd04779 HTH_MerR-like_sg4 Heli 32.0 2.7E+02 0.0058 23.3 7.4 54 123-176 58-117 (134)
478 COG4842 Uncharacterized protei 31.9 2.5E+02 0.0055 22.0 10.8 79 126-204 10-93 (97)
479 smart00298 CHROMO Chromatin or 31.8 43 0.00093 22.3 2.2 29 105-133 21-49 (55)
480 COG2096 cob(I)alamin adenosylt 31.6 1.2E+02 0.0026 27.3 5.6 63 135-206 38-108 (184)
481 PF11802 CENP-K: Centromere-as 31.6 4.7E+02 0.01 25.0 10.4 80 126-210 92-171 (268)
482 PF11471 Sugarporin_N: Maltopo 31.4 1.4E+02 0.0031 22.1 5.0 59 117-178 1-59 (60)
483 TIGR02350 prok_dnaK chaperone 31.4 4.6E+02 0.01 26.5 10.3 88 120-209 499-593 (595)
484 PF07439 DUF1515: Protein of u 31.4 3.1E+02 0.0068 23.0 7.5 57 122-178 11-67 (112)
485 PF00804 Syntaxin: Syntaxin; 31.3 2.1E+02 0.0045 21.0 6.1 62 147-208 10-71 (103)
486 KOG1029 Endocytic adaptor prot 31.3 5E+02 0.011 28.9 10.8 102 112-217 479-590 (1118)
487 PRK11115 transcriptional regul 31.3 3.5E+02 0.0076 23.4 9.4 80 120-199 21-100 (236)
488 PF04678 DUF607: Protein of un 31.2 1.3E+02 0.0027 26.2 5.5 65 111-176 25-89 (180)
489 COG4477 EzrA Negative regulato 31.2 6.5E+02 0.014 26.5 11.4 79 119-197 347-435 (570)
490 PF13166 AAA_13: AAA domain 31.1 5.9E+02 0.013 26.0 13.5 98 122-219 373-471 (712)
491 PF01923 Cob_adeno_trans: Coba 31.1 2E+02 0.0043 24.5 6.7 61 148-208 27-98 (163)
492 KOG0384 Chromodomain-helicase 31.0 38 0.00081 38.4 2.7 80 105-224 229-308 (1373)
493 PRK05683 flgK flagellar hook-a 31.0 4E+02 0.0086 28.2 10.0 85 119-203 127-211 (676)
494 COG0172 SerS Seryl-tRNA synthe 31.0 2.2E+02 0.0048 28.7 7.9 65 141-205 33-101 (429)
495 PF05278 PEARLI-4: Arabidopsis 30.9 4.8E+02 0.01 24.9 11.6 85 135-219 171-261 (269)
496 cd07623 BAR_SNX1_2 The Bin/Amp 30.8 3.9E+02 0.0084 23.8 10.0 81 115-197 36-117 (224)
497 PF04124 Dor1: Dor1-like famil 30.8 4.6E+02 0.01 24.7 10.6 80 139-221 9-88 (338)
498 PLN03223 Polycystin cation cha 30.8 2.7E+02 0.0058 32.6 9.0 92 117-216 764-860 (1634)
499 cd07662 BAR_SNX6 The Bin/Amphi 30.7 4E+02 0.0087 24.6 8.9 81 114-196 46-126 (218)
500 PF01544 CorA: CorA-like Mg2+ 30.5 1.5E+02 0.0032 26.0 5.9 62 135-198 116-177 (292)
No 1
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=100.00 E-value=6.9e-62 Score=402.05 Aligned_cols=126 Identities=50% Similarity=0.903 Sum_probs=123.5
Q ss_pred CCCCcceeehhhhhHhhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025130 83 NSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 83 ~sGg~~s~~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~ 162 (257)
+|| ++++||+|||++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+
T Consensus 1 ~sg-~~~~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 1 GSG-GWSSLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred CCC-CccchhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 356 5889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 163 QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 163 ~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
|.|++++|++||+++++|+++|++|+++||++|++||+||++||+||
T Consensus 80 ~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 80 QKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998
No 2
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=96.87 E-value=0.0031 Score=50.84 Aligned_cols=85 Identities=21% Similarity=0.358 Sum_probs=42.3
Q ss_pred HhhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 025130 97 TLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (257)
Q Consensus 97 ~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (257)
++.+++|++.||+ ++. =||+|..+.. |++.-.+...|++.|+.+++.+ =++++|..
T Consensus 14 a~~~~~~~~~~~~---l~~-~~a~~~~~~~---------------l~~~~~~~~~Rl~~lE~~l~~L-----Pt~~dv~~ 69 (106)
T PF10805_consen 14 AVFGIAGGIFWLW---LRR-TYAKREDIEK---------------LEERLDEHDRRLQALETKLEHL-----PTRDDVHD 69 (106)
T ss_pred HHHHHHHHHHHHH---HHH-hhccHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHH
Confidence 3446667777775 222 3666554433 1111122344444444444433 11556666
Q ss_pred hhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 177 ACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 177 v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
++..++++.+|++.+...+++++-..+.+
T Consensus 70 L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 70 LQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655555554444433
No 3
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=95.73 E-value=0.1 Score=50.01 Aligned_cols=10 Identities=50% Similarity=0.876 Sum_probs=6.8
Q ss_pred hhhheeeeee
Q 025130 99 GALGYGYMWW 108 (257)
Q Consensus 99 GavGYgYmwW 108 (257)
.++|+||.||
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 5667777666
No 4
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=95.56 E-value=0.23 Score=40.05 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=54.1
Q ss_pred CeEEEeCCCCCcceeehhhh-hHhhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025130 76 QIFVRNENSGGNATSLMIPA-ATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (257)
Q Consensus 76 ~iTVvn~~sGg~~s~~ivpa-A~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~ 154 (257)
.-+.|.-|+|.-..+-+.+. =++.-+|.||+-.+- +..|+++|..||+
T Consensus 48 ~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~-------------------------------~~eA~~~l~~~~~ 96 (126)
T TIGR00293 48 KETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKD-------------------------------AEEAIEFLKKRIE 96 (126)
T ss_pred CeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEec-------------------------------HHHHHHHHHHHHH
Confidence 34456656652111222111 123478999999984 6899999999999
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 025130 155 NLNDKVEKQNEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 155 ~vd~kld~~~eis~~i~~eV~~v~~d~~ 182 (257)
.++..+++..+..+..+++++.+...+.
T Consensus 97 ~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 97 ELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888888888775543
No 5
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.55 E-value=0.47 Score=42.67 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=71.1
Q ss_pred heeeeee----eccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025130 102 GYGYMWW----KGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 102 GYgYmwW----KGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
||.++.- .|| +++=+-.+..++..-+..+-++|+.+.+.|+.+.....+|-..+..++++....+..++++-.++
T Consensus 66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777763 378 44445556678999999999999999999999999999999999998888766666555555555
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 178 CDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+. .+..++.-++.|+.+++.+..
T Consensus 145 ~~-------~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 145 KN-------QLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 54 444455555555666655554
No 6
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=95.34 E-value=0.5 Score=38.91 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=39.6
Q ss_pred hhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025130 98 LGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 98 vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
+.-+|.||+-.+- +..|++.|..|++.++..+++..+-...+++++..+
T Consensus 79 ~v~lG~g~~vE~~-------------------------------~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 79 IVSLGAGYSAEKD-------------------------------LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred EEEcCCCEEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999984 577888888888888888777766666666666555
Q ss_pred hhhHHH
Q 025130 178 CDDLFK 183 (257)
Q Consensus 178 ~~d~~~ 183 (257)
...+.+
T Consensus 128 ~~~l~~ 133 (140)
T PRK03947 128 AQELQQ 133 (140)
T ss_pred HHHHHH
Confidence 544433
No 7
>PRK11637 AmiB activator; Provisional
Probab=95.28 E-value=0.24 Score=47.87 Aligned_cols=80 Identities=3% Similarity=0.175 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 124 MATAVSNLNKHLESVTEALT---VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~---~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
..+-...+-+++++....+. .-++++.+.|+.++.++++..+-...++.++.++..+++....++...+.-+..+..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444 333344455566666666555555555555555555555555555555555555444
Q ss_pred hhh
Q 025130 201 KID 203 (257)
Q Consensus 201 Ki~ 203 (257)
.+.
T Consensus 125 ~l~ 127 (428)
T PRK11637 125 LLA 127 (428)
T ss_pred HHH
Confidence 443
No 8
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=95.06 E-value=0.18 Score=41.30 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=46.0
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025130 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
|||+|-+...=.+--.-|..+-..+... -...+|+.|..+.+.|-|-++..+.++ ...+.-++.|-.....
T Consensus 22 YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~-------k~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 22 YVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQ-------KAQGKTLQLILKTLQS 92 (102)
T ss_dssp B-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 7899999876655555555555555433 344455555555555544444444444 3555666667777777
Q ss_pred hhhhhhhhhh
Q 025130 198 LDGKIDSLAD 207 (257)
Q Consensus 198 Le~Ki~~ie~ 207 (257)
+..|||+||.
T Consensus 93 inkRLD~~E~ 102 (102)
T PF01519_consen 93 INKRLDKMES 102 (102)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHhhccC
Confidence 7888888874
No 9
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.92 E-value=0.52 Score=42.48 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=66.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
.++.++......+..+.++||++.++.-++..+-.++.++++..++.-.++...-+++.+.-+..|+.+++.++..+.--
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666677788888888888888888888888888888888888888888888888888888888877655444
Q ss_pred hH----HHHHHHHHhh
Q 025130 213 NI----GMYLLCNFVD 224 (257)
Q Consensus 213 n~----GV~~Lc~f~~ 224 (257)
.- =+..|-+|++
T Consensus 104 ~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 104 VPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 43 3334444444
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.72 E-value=1.1 Score=40.98 Aligned_cols=99 Identities=12% Similarity=0.211 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 123 SMATAVSNLNKHLES-VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 123 ~ms~Av~sv~kqLeq-Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
.|++|...|-.+-+. +...-..+......+|+.+........+-....++|+.+++..+.....++.+++.....||..
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~ 245 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQ 245 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhh
Confidence 388999999888774 4455668888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhHHHHHHHH
Q 025130 202 IDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 202 i~~ie~kQd~tn~GV~~Lc~ 221 (257)
|..++..-.........-+.
T Consensus 246 l~~le~~~~~~~~~~~~~i~ 265 (312)
T PF00038_consen 246 LRELEQRLDEEREEYQAEIA 265 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99988766655554444333
No 11
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=93.99 E-value=1.3 Score=35.79 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
++..|++.+..||+.+...+++..+....++++++.+...+++
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 84 DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788999999999999888888888888888777765554
No 12
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.85 E-value=1 Score=44.09 Aligned_cols=104 Identities=13% Similarity=0.264 Sum_probs=73.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 129 ~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
+.+..++++....+...++.+...|+.+..++++...-...++.++..++.++.+++.+++.+...+..++.++..++.+
T Consensus 191 ~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~ 270 (562)
T PHA02562 191 DHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSK 270 (562)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 33344444444555566666677788888888888888999999999999999999999888888888888888877776
Q ss_pred hHHHhHHHHHH-----HHHhhcccCCChH
Q 025130 209 QDITNIGMYLL-----CNFVDGKKGRTTE 232 (257)
Q Consensus 209 Qd~tn~GV~~L-----c~f~~~~~~~~~~ 232 (257)
-......+.++ |..|+..-...|.
T Consensus 271 l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~ 299 (562)
T PHA02562 271 IEQFQKVIKMYEKGGVCPTCTQQISEGPD 299 (562)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCcCCCcHH
Confidence 55555444443 5666543333354
No 13
>PRK14011 prefoldin subunit alpha; Provisional
Probab=93.69 E-value=0.83 Score=39.06 Aligned_cols=41 Identities=10% Similarity=0.298 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
++.+|+.+|..||+.|++.+++..+..+.+.+++.+++..+
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999988887777543
No 14
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=93.67 E-value=1.6 Score=33.46 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=56.3
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhHHhHHHHHHHHHHH--HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 134 HLESVTEAL---TVAKKHLTQRIQNLNDKVEKQNEISKDI--RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 134 qLeqVs~sL---~~tKkhLsqRI~~vd~kld~~~eis~~i--~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.|+++.+.| .....+|..+|+.+..+|+++.++.... -+.+. -...+.+|..+|.+++..+..|..|+..|+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444 4556789999999999999998866544 23444 778899999999999999999999998774
No 15
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=0.3 Score=46.47 Aligned_cols=79 Identities=11% Similarity=0.247 Sum_probs=46.9
Q ss_pred cceeehhhhhHhhhhhee-eeeeeccCcchhHHHh--------HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025130 87 NATSLMIPAATLGALGYG-YMWWKGLSFADLMYVT--------RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 87 ~~s~~ivpaA~vGavGYg-YmwWKGws~sDlMfVT--------kr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd 157 (257)
.|--|++-|++.+++.|+ |..||-|=+| +||.- |+.|.+=...+.|-+.++-+.++.+++.++..-+.++
T Consensus 82 rwrdy~vmAvi~aGi~y~~y~~~K~YV~P-~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els 160 (300)
T KOG2629|consen 82 RWRDYFVMAVILAGIAYAAYRFVKSYVLP-RFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELS 160 (300)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567767788888885 8889998444 44433 4445555555555555555555555555555555444
Q ss_pred HhHHHHHHH
Q 025130 158 DKVEKQNEI 166 (257)
Q Consensus 158 ~kld~~~ei 166 (257)
..|+...+.
T Consensus 161 ~~L~~l~~~ 169 (300)
T KOG2629|consen 161 RALASLKNT 169 (300)
T ss_pred HHHHHHHHH
Confidence 444444333
No 16
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=93.11 E-value=0.66 Score=36.66 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=49.9
Q ss_pred CeEEEeCCCCCcceeehh-hhhHhhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025130 76 QIFVRNENSGGNATSLMI-PAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (257)
Q Consensus 76 ~iTVvn~~sGg~~s~~iv-paA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~ 154 (257)
.-+.|+-|+|.-+.+-|. |-=++.-+|.||+-++- +..|.+.+..||+
T Consensus 39 ~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s-------------------------------~~eA~~~l~~r~~ 87 (120)
T PF02996_consen 39 HEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMS-------------------------------LEEAIEFLKKRIK 87 (120)
T ss_dssp -EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEE-------------------------------HHHHHHHHHHHHH
T ss_pred ceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEec-------------------------------HHHHHHHHHHHHH
Confidence 444566666622222221 22234578999999984 5788888889999
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025130 155 NLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 155 ~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
.+.+++++..+-.+.+++++..+...+++
T Consensus 88 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 88 ELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777777776666554444
No 17
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.00 E-value=6.2 Score=38.50 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK 172 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~ 172 (257)
.+....+...+.++.-.+.+.+.+..+.++|+.++.++.......+.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 151 SLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444445566666666666666666666665555554443
No 18
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=92.90 E-value=1.9 Score=36.36 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
.+++++..++.|+..++.-|..+...+..||+
T Consensus 93 ~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 93 EVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444
No 19
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.87 E-value=2.4 Score=35.95 Aligned_cols=61 Identities=25% Similarity=0.294 Sum_probs=46.8
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
|+.||+-|...||+...--+.+.+.+.++....+++..-+..+..--..+|.|++.++.+-
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6677777777787777777777777777777777777788888777777788877777653
No 20
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.86 E-value=0.14 Score=49.24 Aligned_cols=86 Identities=14% Similarity=0.323 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 123 SMATAVSNLNKHLESVTEALTVAK---KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tK---khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
+|+.++.++...|..++..|+.-+ .+|+..|..+...+.+.......++..|..+..|+++.+.||-..--.|..||
T Consensus 67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence 344444445555555444443333 34556666666666667777777777888888888888888888888888888
Q ss_pred hhhhhhhhh
Q 025130 200 GKIDSLADK 208 (257)
Q Consensus 200 ~Ki~~ie~k 208 (257)
.|+..+|..
T Consensus 147 ~RV~~LEs~ 155 (326)
T PF04582_consen 147 SRVKALESG 155 (326)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 888877764
No 21
>PRK11637 AmiB activator; Provisional
Probab=92.77 E-value=1.9 Score=41.74 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=52.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 129 SNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 129 ~sv~kqLeqVs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+..-++|+++-..|...++.+. +++..+..++++...=...+.+++.+++.+++.+..+++.++.-+..++.+|+..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888777777666 6666666666666555556666666666666666666666666666666666655
Q ss_pred hh
Q 025130 206 AD 207 (257)
Q Consensus 206 e~ 207 (257)
+.
T Consensus 123 ~~ 124 (428)
T PRK11637 123 ER 124 (428)
T ss_pred HH
Confidence 44
No 22
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=92.45 E-value=1.9 Score=34.04 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHH
Q 025130 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 138 Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
|..+|.++-++|.+.|++|+..++.-.+..... .++...+..++.|-..+-+-....+.+..++|..|.-....+.
T Consensus 2 ~~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 2 VTYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777888887777666544433 5555666667777777777777778888888877776666665
Q ss_pred HHHHHh
Q 025130 218 LLCNFV 223 (257)
Q Consensus 218 ~Lc~f~ 223 (257)
...+-+
T Consensus 78 ~a~e~I 83 (89)
T PF13747_consen 78 SAIETI 83 (89)
T ss_pred HHHHHH
Confidence 554433
No 23
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=91.89 E-value=4.6 Score=34.11 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD 169 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~ 169 (257)
|.+-+-|.-...||.+-.+.++....+|.+||-.+|..+....+....
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~e 74 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVE 74 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999987765544443
No 24
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=91.60 E-value=2.1 Score=32.77 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=13.7
Q ss_pred HHHhHhhHHHHHHHHHHhhHHHHHHHHHH
Q 025130 117 MYVTRKSMATAVSNLNKHLESVTEALTVA 145 (257)
Q Consensus 117 MfVTkr~ms~Av~sv~kqLeqVs~sL~~t 145 (257)
++.+-+++......+.+.++.+.+.+...
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i 45 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPI 45 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455555555555444444444444333
No 25
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=90.92 E-value=1.3 Score=43.59 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=25.6
Q ss_pred hhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 025130 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 99 GavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld 161 (257)
-++|+||-|| |. --.......-+.+..+|+.......+.+..|.+.+..++.++.
T Consensus 48 la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~ 102 (390)
T PRK10920 48 LAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALD 102 (390)
T ss_pred HHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667766666 21 1122234444555555555555444444444444444433333
No 26
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=90.36 E-value=9.7 Score=31.91 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHHHHHh-hhhcC
Q 025130 53 NFTDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~Lass 74 (257)
.+...+...++.++.+. .|+-+
T Consensus 40 ~~i~~~~~~i~~ia~qt~lLalN 62 (213)
T PF00015_consen 40 EDISEILSLINEIAEQTNLLALN 62 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHhhhh
Confidence 34566777788888888 66655
No 27
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.19 E-value=3.3 Score=33.33 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=46.3
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh--hhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV--EHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i--~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
..+++.+++++++ ..+.++.+..++.+. ..|+..++-.+..++++++.+++.=+.-++-+.+|.+
T Consensus 34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444443 355566777777777 8888888888888888888888887777777777765
No 28
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.45 E-value=6.4 Score=39.34 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=63.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
++|+|....|++.. ++|....++..+...-.+..++++..+..-+.++..|++.++..+..++.++.-++..+ ..
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE 112 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 77777777776554 44555566666666667777788888888888888888888888888899988887655 77
Q ss_pred hHHHHHHHHHh
Q 025130 213 NIGMYLLCNFV 223 (257)
Q Consensus 213 n~GV~~Lc~f~ 223 (257)
..++....--+
T Consensus 113 qr~~La~~L~A 123 (420)
T COG4942 113 QRRRLAEQLAA 123 (420)
T ss_pred HHHHHHHHHHH
Confidence 77776554433
No 29
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.98 E-value=4.6 Score=38.03 Aligned_cols=68 Identities=16% Similarity=0.347 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....||+.+..-+......+.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888889999999999888888888888888888888888888877766665544443
No 30
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.94 E-value=6 Score=38.43 Aligned_cols=77 Identities=12% Similarity=0.258 Sum_probs=49.0
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
|=|=-=+.+++++...+..||+.+++.|..+...+..|=..+..+++....-=+..++++.++++...+....|...
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~ 299 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSER 299 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44666677788888888888888888888887777777666666666555555555555554444444443333333
No 31
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=88.78 E-value=9.3 Score=32.93 Aligned_cols=81 Identities=14% Similarity=0.282 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH-HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK-QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~-~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
.++..+..+-.||..+.+.|...-..+..|++.+-..+++ ...+++.++.|++.+..++...-+.|-.+......|=..
T Consensus 35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a 114 (140)
T PF04513_consen 35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566677777777777777777777777777776666554 345566777777777777766666666665555555444
Q ss_pred hh
Q 025130 202 ID 203 (257)
Q Consensus 202 i~ 203 (257)
+.
T Consensus 115 ln 116 (140)
T PF04513_consen 115 LN 116 (140)
T ss_pred HH
Confidence 44
No 32
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=88.67 E-value=10 Score=30.83 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhHHHH
Q 025130 125 ATAVSNLNKHLESVT 139 (257)
Q Consensus 125 s~Av~sv~kqLeqVs 139 (257)
.+.+.++..+++.+.
T Consensus 4 ~~~~~~l~~~~~~l~ 18 (202)
T PF01442_consen 4 DDRLDSLSSRTEELE 18 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 33
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.21 E-value=11 Score=37.09 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 158 DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 158 ~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.++.+........++++.........+..++..++..+..++.++.++
T Consensus 337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l 384 (562)
T PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKL 384 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Confidence 333333333333334444444444444444444444444444444433
No 34
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=87.90 E-value=15 Score=30.78 Aligned_cols=95 Identities=11% Similarity=0.237 Sum_probs=39.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+..++.+-.+....+...-+++.+.++.+-..+++..+......+.+.+....+..|...++.+...+..+...+.++..
T Consensus 84 ir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~ 163 (213)
T PF00015_consen 84 IRKLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQSE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHH
Confidence 33334444444444444444444444444433444433333333444444444444444444444444444444444433
Q ss_pred hhHHHhHHHHHHHHH
Q 025130 208 KQDITNIGMYLLCNF 222 (257)
Q Consensus 208 kQd~tn~GV~~Lc~f 222 (257)
.-.-.+..+.-+...
T Consensus 164 ~~~~i~~~i~~i~~~ 178 (213)
T PF00015_consen 164 SIEQINESIEEISEI 178 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334333333
No 35
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=87.54 E-value=10 Score=35.96 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=74.3
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh--------------
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE-------------- 185 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~-------------- 185 (257)
.-+.+-.=-.++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+...+.-+..+.
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d 164 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD 164 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence 344444556899999999999999999999999999998877777666666554443333333332
Q ss_pred ----hhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 186 ----HNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 186 ----~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
..+..+.+.+.-||.|+..++--+..+..+.--+
T Consensus 165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqi 202 (333)
T PF05816_consen 165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQI 202 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2346678889999999999999888888776543
No 36
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=87.41 E-value=4.6 Score=34.19 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
..||+.++..|..|+.+|+++..+
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~~ 131 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLANK 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999998887765
No 37
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.29 E-value=14 Score=33.40 Aligned_cols=72 Identities=11% Similarity=0.189 Sum_probs=50.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 129 ~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
....++..+--+.+...|..|.++|+.+...++....-.+..++.|...+..+..+..+++++..+=..|..
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666777778888888888888877777777777777777777777777777777654444443
No 38
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=87.24 E-value=12 Score=28.78 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHhhccc--CCChHHHH
Q 025130 210 DITNIGMYLLCNFVDGKK--GRTTESMQ 235 (257)
Q Consensus 210 d~tn~GV~~Lc~f~~~~~--~~~~~~~q 235 (257)
......+..+|.|+...- +.-+++++
T Consensus 85 ~~~l~~l~~~~~~~e~~l~~~~~~e~L~ 112 (127)
T smart00502 85 TQKQEKLSHAINFTEEALNSGDPTELLL 112 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 345667788888887433 33346665
No 39
>PRK04406 hypothetical protein; Provisional
Probab=86.64 E-value=5.2 Score=30.74 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025130 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
++...+.+||+.|..++--|.......-+.|++-+..+......++.+.+-+.
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557888999999999888888888888888777666665555555544333
No 40
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=86.61 E-value=2.9 Score=37.60 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=24.0
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
..|+-+|..|+|.+.|.-..+-+.+.+-++--...+.|+..+.+-+..||.|+|.
T Consensus 78 A~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~ 132 (189)
T TIGR02132 78 ASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDK 132 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333322223333444444454445555555554
No 41
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=86.47 E-value=19 Score=30.60 Aligned_cols=79 Identities=13% Similarity=0.230 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
+++++-++.++....++-+.+...=.++...++.....+++..+.+..+.+.+.++..-+..+..-++.+...+..+..
T Consensus 136 ~~la~~t~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~ 214 (262)
T smart00283 136 RKLAERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAA 214 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333344444444444444444444444444444444444444444444444443333
No 42
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=86.47 E-value=11 Score=39.89 Aligned_cols=35 Identities=11% Similarity=0.301 Sum_probs=25.1
Q ss_pred HHHHHHHHhhHHHHHH-HHHHHHHHHHHHHhhHHhH
Q 025130 126 TAVSNLNKHLESVTEA-LTVAKKHLTQRIQNLNDKV 160 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~s-L~~tKkhLsqRI~~vd~kl 160 (257)
..++++.+|++++-.. ...++.|+...|++.+..+
T Consensus 187 ~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 187 TFLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 3445667777777777 7778888888888777653
No 43
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=86.42 E-value=15 Score=29.16 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh---hHHHHHHHHHhhhhhhhhhhhh
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH---NLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~---dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
-|...=+..+.|...+++.......-.+.......+++.-+.+|.. .|..+..+|..|+.-..++|.|
T Consensus 25 LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 25 LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555544444433 6666666666666666666654
No 44
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=86.33 E-value=11 Score=28.86 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=26.3
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+..++.+.+++|....=...+-++++++.+|+...-..++.+-+.|..++..+.++
T Consensus 32 ~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333344444433333333344444444444444455555555555555555543
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.31 E-value=11 Score=34.05 Aligned_cols=115 Identities=10% Similarity=0.130 Sum_probs=70.5
Q ss_pred hhcCCCeEEEeCCCCCcceeehhhhhHhhhhheeeeeeeccCcchhHH--HhHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 025130 71 RASSGQIFVRNENSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMY--VTRKSMATAVSNLNKHLESVTEALTVAKKH 148 (257)
Q Consensus 71 Lassr~iTVvn~~sGg~~s~~ivpaA~vGavGYgYmwWKGws~sDlMf--VTkr~ms~Av~sv~kqLeqVs~sL~~tKkh 148 (257)
+.+.-++||+....+++|+=.--+ =|-.||.+-|- +++-.= +-=..+.+-++.+..+|++.......-+.+
T Consensus 50 l~~G~~v~vl~~~~~~~w~~Vr~~---~G~~GWV~~~~----Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~ 122 (206)
T PRK10884 50 LNAGEEVTLLQVNANTNYAQIRDS---KGRTAWIPLKQ----LSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAE 122 (206)
T ss_pred EcCCCEEEEEEEcCCCCEEEEEeC---CCCEEeEEHHH----hcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444567787765433334222211 14455544432 232211 112356777777778888888888888888
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
+.++++..+....+.++=-++.++++..++.++....-+.+.++
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777777777778888887766655555554443
No 46
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=86.25 E-value=9.4 Score=29.80 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHH----HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKD----IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~----i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
+-.+.+++++|++.=...|.++++.++. ++.+...=...+.++..|++.++..++.|..|+..
T Consensus 16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777766666666665543 34555555566777899999999999999988863
No 47
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.00 E-value=18 Score=36.63 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhccc-CCChHHH
Q 025130 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKK-GRTTESM 234 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~-~~~~~~~ 234 (257)
.-..++++..++...++.|..+...++..+..|.....+...+-..-..-+..+-.++...+ ..+|+.+
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y 446 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDY 446 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 33444455555566666666666666666665555544444333333333334444444333 5566654
No 48
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=85.90 E-value=8.7 Score=39.48 Aligned_cols=92 Identities=12% Similarity=0.278 Sum_probs=66.6
Q ss_pred cchhHHH----hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 025130 113 FADLMYV----TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 113 ~sDlMfV----Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (257)
++++.|. +||||...++ +.+=..+..+-+.=..+..+|+++...++++++....+.+.+...+.+...+-.++
T Consensus 6 L~~~~~~nt~~aRr~LR~~iE---~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~ 82 (618)
T PF06419_consen 6 LSEFGFENTLEARRNLRSDIE---KRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA 82 (618)
T ss_pred hcccccCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 8999987654 45555666666666778889999999999999999999999988887777766666
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHhH
Q 025130 189 KDLQSMIYCLDGKIDSLADKQDITNI 214 (257)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (257)
..+ -.+...++.||.....
T Consensus 83 ~~L-------~~~~~~~~~k~~ll~~ 101 (618)
T PF06419_consen 83 SEL-------REQKEELELKKKLLDA 101 (618)
T ss_pred HHH-------HHHHHHHHHHHHHHHH
Confidence 666 4555555555554443
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.84 E-value=32 Score=32.47 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=66.1
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHhhHHhHHHHH----HHHHHHHHHHHHhhhhHHHhhhh
Q 025130 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVA---KKHLTQRIQNLNDKVEKQN----EISKDIRKNVEEACDDLFKVEHN 187 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVs~sL~~t---KkhLsqRI~~vd~kld~~~----eis~~i~~eV~~v~~d~~~i~~d 187 (257)
+-+--....|.+-.+.+.++++.+.+.+... +..|..+|.++....++.. +--...+.++.+...+++..+.+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666665544433 4455556666555544322 11234455555555556666666
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhcccC
Q 025130 188 LKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKG 228 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~ 228 (257)
+..++.-+..++.+|..++....-...=|.-+=.+.+...+
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~ 272 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRG 272 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666667777777777777666666666666665554443
No 50
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=85.79 E-value=4.3 Score=42.04 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhHHhHHHH
Q 025130 145 AKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~ 163 (257)
+.+.+++|+..++.++.+.
T Consensus 379 ~~~~~~~~l~~le~~l~~~ 397 (656)
T PRK06975 379 SVHQLDSQFAQLDGKLADA 397 (656)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.78 E-value=13 Score=41.16 Aligned_cols=92 Identities=12% Similarity=0.182 Sum_probs=72.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
+..++.-..+...-+...+++...+.++-+..+-.+.++++++.-.+.+..+..|++..+..+..++.++.+.+..-+-.
T Consensus 291 ~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~ 370 (1074)
T KOG0250|consen 291 KKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKL 370 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555666666676777777777778888888888899999999999999999999999999888888
Q ss_pred hHHHHHHHHHhh
Q 025130 213 NIGMYLLCNFVD 224 (257)
Q Consensus 213 n~GV~~Lc~f~~ 224 (257)
-.-+.+||.-++
T Consensus 371 k~~~d~l~k~I~ 382 (1074)
T KOG0250|consen 371 KKEVDRLEKQIA 382 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 889999998875
No 52
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=85.71 E-value=3.9 Score=31.88 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHHHhhhhhhhh
Q 025130 184 VEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
+..-++.+-..+.+|+.++..
T Consensus 40 l~~klDa~~~~l~~l~~~V~~ 60 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNE 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=85.40 E-value=16 Score=32.87 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=52.7
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHH
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLC 220 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 220 (257)
..||+.|..++.+...+.........++...+..+..|+......+..+|.|+..++..-.....-+.-|=
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh
Confidence 44666666666677777777777777888888888888888888888888888888876666655555543
No 54
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=85.37 E-value=23 Score=30.53 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=46.2
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH-hhhhHHHHH
Q 025130 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKH----LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK-VEHNLKDLQ 192 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVs~sL~~tKkh----LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~-i~~dv~~v~ 192 (257)
+|||..+.+..-..-..+.++-..+....++ +....+.|...+|.. -..+++|+..++.++.- |..+=..++
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l---~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL---RQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6788888877777777777776666555544 233333333333322 23444445444433320 111111334
Q ss_pred HHHHhhhhhhhhhhhhhHHHhHHH
Q 025130 193 SMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 193 ~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
.....+|.||..++.+-+....++
T Consensus 120 ~e~~~~~~ki~e~~~ki~~ei~~l 143 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKIDTEIANL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444444443343
No 55
>PRK09039 hypothetical protein; Validated
Probab=85.18 E-value=15 Score=35.19 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
.....+..|+..+.++|++.+..+....-+|..++..++.++.-+..++..+...|.
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334477788888888888887777766666655555555555544444444444443
No 56
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=85.00 E-value=9.3 Score=26.84 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=32.1
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
+.|+.+..++.+.+++...|.++|.+=..-+.+|..+++....-+..=-.+|..
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666555555444444443
No 57
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.60 E-value=31 Score=32.87 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=76.1
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHhhHHhHHHH----HHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALTV---AKKHLTQRIQNLNDKVEKQ----NEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~~---tKkhLsqRI~~vd~kld~~----~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
-..-.|.+--+.+.++++.+.+.+.. -+..|...+..+..-.++. .+.-..+++++.+...+++....++..+
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~ 230 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL 230 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666555544333 3334444444444444442 2244455667777777777778888888
Q ss_pred HHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhcccCCChH-H--HHHHhhhcccccc
Q 025130 192 QSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRTTE-S--MQEQLKLGEKARR 246 (257)
Q Consensus 192 ~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~-~--~q~~~k~~~~~~~ 246 (257)
+.-+..++.+|.....+..-.+.=|..+=...+...+-.+. . |+++++.-.+-.|
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888887777777777776666655544432 2 4555544444333
No 58
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.56 E-value=9.4 Score=31.84 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=53.2
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
.+|..+++-+-.+++..|.+.+.... ..+|...++.+..+.+..-++-+.--++|.+++.|+..+
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~~~~~-~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRALKKE-VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 38999999999999998888555444 458999999999999999999999889998888666543
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.42 E-value=27 Score=35.40 Aligned_cols=100 Identities=13% Similarity=0.216 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh----------HHHhhhh---
Q 025130 124 MATAVSNLNKHLESVTEALTV---AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD----------LFKVEHN--- 187 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~---tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d----------~~~i~~d--- 187 (257)
....+..+.+++|++|+.|.. ||+...+.+..+.+.++...+-...++.++..++.. +..+..+
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~ 359 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLES 359 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHH
Confidence 345566677777777777653 555555555555555555555555555544444443 2222222
Q ss_pred ------------------HHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHh
Q 025130 188 ------------------LKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 188 ------------------v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
...+......|..++..++..|.--..-+..|+.--
T Consensus 360 Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E 413 (569)
T PRK04778 360 LEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDE 413 (569)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234445566777777888888888888887777644
No 60
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=84.20 E-value=5.5 Score=35.05 Aligned_cols=62 Identities=10% Similarity=0.270 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.-..-|..+.+.|..++++..+.-+...++|--. .|=+=+.+|+.+...+..||.+|..+|.
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566667777777777777777778887443 4677889999999999999999998664
No 61
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=84.11 E-value=22 Score=31.05 Aligned_cols=88 Identities=17% Similarity=0.337 Sum_probs=50.0
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh----hhHHHhhhhHHHHHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEAL-TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC----DDLFKVEHNLKDLQSM 194 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL-~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~----~d~~~i~~dv~~v~~~ 194 (257)
|-.++.+-++.....-+.+.+.+ ..+|..|.+.|..|-..+.+..+-++.+.+++...+ .|...+..|+..++.+
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555555554444444444444 456788888888887776665555555555554433 3445566666666666
Q ss_pred HHhhhhhhhhhhh
Q 025130 195 IYCLDGKIDSLAD 207 (257)
Q Consensus 195 V~~Le~Ki~~ie~ 207 (257)
+.+-.+.|+.++.
T Consensus 158 l~~~~g~I~~L~~ 170 (184)
T PF05791_consen 158 LAGENGDIPQLQK 170 (184)
T ss_dssp HHHTT--HHHHHH
T ss_pred HhcccCCHHHHHH
Confidence 6666666665554
No 62
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.71 E-value=13 Score=36.23 Aligned_cols=87 Identities=16% Similarity=0.289 Sum_probs=57.9
Q ss_pred CcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------HHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025130 112 SFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNL-------NDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 112 s~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~v-------d~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
++...+-.||.-|..--+.+++.||.+.+ =-+||.++++.+ -++|.+..+--++...-|++....+.+|
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~s----REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDISKTLEKIES----REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 47788888999999987777777776554 455555555444 3445555555555556677777777788
Q ss_pred hhhHHHHHHHHHhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki 202 (257)
..+++.+++-+..=+.+|
T Consensus 307 seeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 307 SEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 888777776655444444
No 63
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=83.14 E-value=17 Score=35.35 Aligned_cols=99 Identities=13% Similarity=0.225 Sum_probs=70.2
Q ss_pred eccCc-chhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 025130 109 KGLSF-ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN 187 (257)
Q Consensus 109 KGws~-sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d 187 (257)
|-|.+ -|=|---|+|...++..++-+|+.++..+..+-.++.+|=..+...|.-...--+...++..++++.-.+...+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45544 36788899999999999999999999999999999998888888777655544445556666666665555555
Q ss_pred HHH----HHHHHHhhhhhhhhhhh
Q 025130 188 LKD----LQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 188 v~~----v~~~V~~Le~Ki~~ie~ 207 (257)
|.+ +.+++..+|.+=.+||.
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 44455555555444444
No 64
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=83.03 E-value=19 Score=31.86 Aligned_cols=92 Identities=15% Similarity=0.253 Sum_probs=58.2
Q ss_pred eeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH-HHHh-hhhHHHh
Q 025130 108 WKGLSFADLMYVTRKSMATAVSNLNKHLESVTEAL-TVAKKHLTQRIQNLNDKVEKQNEISKDIRKN-VEEA-CDDLFKV 184 (257)
Q Consensus 108 WKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL-~~tKkhLsqRI~~vd~kld~~~eis~~i~~e-V~~v-~~d~~~i 184 (257)
|++| +.+| .+|++-+|++++.+... ...+.-++.-++.+...+.+...-...+-.+ |..+ ..+...+
T Consensus 14 w~~~---------~~sl-s~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l 83 (165)
T PF09602_consen 14 WKQW---------SQSL-SLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSL 83 (165)
T ss_pred HHHH---------HHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 3344 46888999999877544 3345557777777777666665555555544 5555 3344556
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.+.+.....-++.|..+|..+--++
T Consensus 84 ~d~inE~t~k~~El~~~i~el~~~~ 108 (165)
T PF09602_consen 84 NDSINEWTDKLNELSAKIQELLLSP 108 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcch
Confidence 6666677777777777776554443
No 65
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=82.94 E-value=4.5 Score=32.01 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
+..|.+.|..|++.+...+++..+-...+++++..++..+.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455578888888888888888877777777777776655544
No 66
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=82.81 E-value=29 Score=31.47 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
.+....+.++++|......+..+| .+++.++..++....=....+++++.+..+...+..+.+..+.-...|+..|
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~----~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQK----QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666665544 3456666666666666667777788888888888888888888888888887
Q ss_pred hhhhhhhHHHhHH
Q 025130 203 DSLADKQDITNIG 215 (257)
Q Consensus 203 ~~ie~kQd~tn~G 215 (257)
..+..+-.-...-
T Consensus 97 ~~l~~~i~~l~~~ 109 (264)
T PF06008_consen 97 QNLQDNIQELIEQ 109 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 7766654433333
No 67
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=82.74 E-value=11 Score=37.38 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=30.3
Q ss_pred ehhhhhHhhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHhhHHhHHH
Q 025130 91 LMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAK--KHLTQRIQNLNDKVEK 162 (257)
Q Consensus 91 ~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tK--khLsqRI~~vd~kld~ 162 (257)
+++-|+.+|+.|| -||++- .-..+.-...+.+|++....+.+..+ +.+..+|.....+++.
T Consensus 39 all~aLgLGagg~--~f~QqQ---------~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~ 101 (391)
T COG2959 39 ALLLALGLGAGGY--YFGQQQ---------NVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDR 101 (391)
T ss_pred HHHHHHHhchhHH--HHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555 477763 22333444445555555555555555 5555555444444444
No 68
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=82.56 E-value=5.2 Score=29.79 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=29.2
Q ss_pred ehhhhhHhhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHH
Q 025130 91 LMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTV 144 (257)
Q Consensus 91 ~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~ 144 (257)
+++=|++-+++||.|-==+|- =||+.+.+....+..++++.++....
T Consensus 5 ~l~Ga~~Ga~~glL~aP~sG~-------e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPKSGK-------ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHhCCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344344445666666555664 37778888887777777666655544
No 69
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.50 E-value=6.6 Score=34.28 Aligned_cols=96 Identities=20% Similarity=0.326 Sum_probs=45.1
Q ss_pred CcchhHHHhHhhHHH---HHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025130 112 SFADLMYVTRKSMAT---AVSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 112 s~sDlMfVTkr~ms~---Av~sv~kqLeqVs~sL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
++.+..+..+..|+. .+..+..+|-..+..+..-++.+.. +|..+...+....+=.+...+++.+....++.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777766664 4677788888888888777766655 5555555666666666666788888888999999
Q ss_pred hhHHHHHHHHHhhhhhhhhhhh
Q 025130 186 HNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+++..++--...+|.|+..++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 70
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=82.35 E-value=8.5 Score=31.59 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhhhHHH-hhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 164 NEISKDIRKNVEEACDDLFK-VEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~-i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.++.+.+.+.|..+-.++.- ...||+.++..|..|+.+|..++.
T Consensus 73 ~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 73 DKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777666544432 348999999999999999987764
No 71
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=81.77 E-value=6.8 Score=29.26 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=32.8
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+..||..|..|+--+.+......+.|++-+. +|+.++..+..|..||..++
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~-------~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQR-------QIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Confidence 5678888888888887777777777766664 44455556666667776665
No 72
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.10 E-value=39 Score=29.87 Aligned_cols=124 Identities=15% Similarity=0.230 Sum_probs=56.9
Q ss_pred cCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh--HHHHHHHHHHHHHHHHHhhhhHHHh-hhh
Q 025130 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK--VEKQNEISKDIRKNVEEACDDLFKV-EHN 187 (257)
Q Consensus 111 ws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k--ld~~~eis~~i~~eV~~v~~d~~~i-~~d 187 (257)
|+||.--.. .+.+.++.+.+.++.+...+...+..|..--..-... =.+..+--+..+++...++..++.. ..|
T Consensus 57 WsFps~~~~---~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D 133 (188)
T PF03962_consen 57 WSFPSQAKQ---KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSEND 133 (188)
T ss_pred EecChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567766544 4455666666666666666666655554432111111 0000111111222333333333321 123
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhcccCCChHHHHHHhhhc
Q 025130 188 LKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRTTESMQEQLKLG 241 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~~q~~~k~~ 241 (257)
-+.| ..+...+...-..-++-+.-|+.|-.|+..+-+--++.+..++-+|
T Consensus 134 p~~i----~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~~i~k~f~Ip 183 (188)
T PF03962_consen 134 PEKI----EKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEEDIRKEFGIP 183 (188)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHHHHHHHcCCc
Confidence 3333 2333333333334555666788888888765443444455454443
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.99 E-value=33 Score=29.04 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=53.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+++..=-|+|++=...+..-=+.|+.|++.+...+|+..+-....++.+.+.. .-....++++..|..||..++..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~----~~~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE----KRKSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHhHHHHHhhHHHHHHHHHHH
Confidence 44555566677777766666677777777777777766544444444433322 12233446777777777777777
Q ss_pred hhhhHHHhHHHHHH
Q 025130 206 ADKQDITNIGMYLL 219 (257)
Q Consensus 206 e~kQd~tn~GV~~L 219 (257)
+.+=.-|+.-+...
T Consensus 93 e~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 93 EKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 76666666555443
No 74
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=80.80 E-value=6.2 Score=37.97 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
..++.|..+-++||.|+.=.-+--..+..|++.|..+.|+ -..-+--+++..++++++..++.|+..+-
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~-~~~~~~~~~~~~~lr~~l~~~~~em~~L~ 113 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA-LSLEPPSAEEMKELREELVDFHGEMVLLE 113 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999875 11112223456667777777777766653
No 75
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=80.77 E-value=7.3 Score=29.95 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=40.6
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
+++-+.+...-++..+......-....+.+..++++.=.+||=. +++|....+.=+.+ .+..+..||
T Consensus 4 ~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~~~L~~-------~r~kl~~LE 70 (79)
T PF04380_consen 4 PNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQKAVLAR-------TREKLEALE 70 (79)
T ss_pred chhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 34555555555555555555555556666666666666665533 34444444433333 444445556
Q ss_pred hhhhhhhh
Q 025130 200 GKIDSLAD 207 (257)
Q Consensus 200 ~Ki~~ie~ 207 (257)
.||..+|.
T Consensus 71 arl~~LE~ 78 (79)
T PF04380_consen 71 ARLAALEA 78 (79)
T ss_pred HHHHHHhc
Confidence 66666554
No 76
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=80.49 E-value=10 Score=35.15 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=40.2
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHH
Q 025130 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
+|+.+|.+++....-.+.+++++..++..++.+..++..++..+..|+..+..++.-=+-.+.-+.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666666666666666666666666666666555554444444333
No 77
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=80.32 E-value=52 Score=32.44 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025130 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
+.+...=.++..-.+.+....+++.+...++...+.++...+.++-...+.
T Consensus 273 ~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~ 323 (553)
T PRK15048 273 DAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQ 323 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444445555555555554444444444444444444333333
No 78
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.10 E-value=44 Score=35.44 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
...++.++..|+..+-...++|.+ ++.+..++.+.+++.-+.|..|++++.++|..-..-+..+-+
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e~Ql~--------------~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKEQQLK--------------ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666555533 334455566667788888888999999999888888886655
Q ss_pred Hhh
Q 025130 222 FVD 224 (257)
Q Consensus 222 f~~ 224 (257)
-+.
T Consensus 622 ~l~ 624 (717)
T PF10168_consen 622 LLN 624 (717)
T ss_pred HHh
Confidence 444
No 79
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=79.90 E-value=16 Score=30.37 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 137 qVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
++...|..+|.+|.+-=+.|.+..++..++-..+.++-..+.
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~ 70 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLY 70 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666677777777777666666554444
No 80
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=79.87 E-value=43 Score=36.91 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=9.9
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 182 FKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
..+..++...+.....|+..+..++.
T Consensus 873 ~~l~~~l~~~~~~~~~l~~~l~~~~~ 898 (1163)
T COG1196 873 EELEDELKELEEEKEELEEELRELES 898 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 81
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=79.49 E-value=10 Score=36.50 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=13.5
Q ss_pred hhHhhhhheeeeeeec
Q 025130 95 AATLGALGYGYMWWKG 110 (257)
Q Consensus 95 aA~vGavGYgYmwWKG 110 (257)
++++|+.||.|.++-.
T Consensus 40 ~~alg~~~~~~~~~q~ 55 (372)
T PF04375_consen 40 ALALGAGGWYWQQQQL 55 (372)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4789999999998874
No 82
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=79.13 E-value=25 Score=35.38 Aligned_cols=99 Identities=17% Similarity=0.366 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhhHHHHHH------------HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH------------Hhh
Q 025130 123 SMATAVSNLNKHLESVTEA------------LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE------------EAC 178 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~s------------L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~------------~v~ 178 (257)
.+..-++++-.++.+|.++ +.+.|++|+..-|+|-.|.|+.+.+.+.+|++|. .+.
T Consensus 177 ~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~ 256 (426)
T smart00806 177 EIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQ 256 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3445555666666666554 5677999999999999999999999999999874 333
Q ss_pred hhHHHhhhhHHHHHHHHH--------hhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 179 DDLFKVEHNLKDLQSMIY--------CLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~--------~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
.|++....|++.++.-+. .+|..|+.|..-|+|-|.==.++..
T Consensus 257 kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D 307 (426)
T smart00806 257 KELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD 307 (426)
T ss_pred HHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444432 3567777787888877665544444
No 83
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=79.12 E-value=15 Score=36.59 Aligned_cols=114 Identities=22% Similarity=0.410 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH------------HhhhhHHHhhhhHHHHHHHHHh--------h
Q 025130 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE------------EACDDLFKVEHNLKDLQSMIYC--------L 198 (257)
Q Consensus 139 s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~------------~v~~d~~~i~~dv~~v~~~V~~--------L 198 (257)
-.-+..-|++|+.+-++|-.++|+.+.+.+.++++|. .+..|++....+++.+..-+.. +
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4457788999999999999999999999999998864 4555555556666655555543 4
Q ss_pred hhhhhhhhhhhHHHhHHHHHHHHHhhcccCCChHHH-------HHHhhhcccc--ccc--ccCCCC
Q 025130 199 DGKIDSLADKQDITNIGMYLLCNFVDGKKGRTTESM-------QEQLKLGEKA--RRL--LKAPSP 253 (257)
Q Consensus 199 e~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~~-------q~~~k~~~~~--~~~--l~~~~~ 253 (257)
|.-|+.|..-|+|=+.=-.++.. ....-.++.+-| .+|.+-++++ |.. ++-|+|
T Consensus 281 E~EL~~V~eEQqfL~~QedL~~D-L~eDl~k~~etf~lveq~~~~Q~k~~~~~~~r~~~~~~~~~p 345 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLLSD-LKEDLKKASETFALVEQCTEEQEKSPSRSRNRPVANLPIPEP 345 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccCCCCCCC
Confidence 67777888888887777554444 333223333322 2455555555 333 555544
No 84
>PRK00295 hypothetical protein; Provisional
Probab=78.76 E-value=12 Score=28.05 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=31.8
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
+..||..|..|+--|.......-+.|+.-+..+......++.+..-+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888887777777777777777766555555555444443333
No 85
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=78.39 E-value=12 Score=29.24 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh---hhhHHHHHHHHHhhhhhhhhh
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV---EHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i---~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+..++++|..-|+.+.+.|++..+.... +..+=++| ..++..=++.|..++.+|..|
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~i-------ve~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRI-------VEKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 4445556666666666655555433333 22222222 234444455555555555544
No 86
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=78.26 E-value=44 Score=28.86 Aligned_cols=79 Identities=9% Similarity=0.256 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH--------HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ--------NEISKDIRKNVEEACDDLFKVEHNLKDLQSMI 195 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~--------~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V 195 (257)
+++..+.+-.|.-++...|+..+.-+..|+..++.++... .+.....-+.+..++ +.++.++..++..+
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq---~~~rneLtnlnsil 94 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQ---DTLRNELTNLNSIL 94 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555444444331 123333444444444 44556666666666
Q ss_pred Hhhhhhhhhh
Q 025130 196 YCLDGKIDSL 205 (257)
Q Consensus 196 ~~Le~Ki~~i 205 (257)
..|-..+.-|
T Consensus 95 ~nL~ssvTNi 104 (140)
T PF04513_consen 95 NNLTSSVTNI 104 (140)
T ss_pred HHHHHHHhhH
Confidence 6666666533
No 87
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.23 E-value=45 Score=36.76 Aligned_cols=69 Identities=20% Similarity=0.403 Sum_probs=43.1
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHh
Q 025130 154 QNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 154 ~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
+.+..+++.+.+--...++++.++..++..+...+..+..-+..++.++++++..+.. ..|+...-.+.
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 510 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA-SQGVRAVLEAL 510 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHH
Confidence 3333444444444455556666666666677777777777777777788888877766 56555444433
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.16 E-value=40 Score=33.82 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=68.2
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLT-------QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLs-------qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
-|+-+-++....-++|..|...|++-+++|. .+.+.++..+.|.+..-.++..+..+-+..++..+-+=..+.
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677888888888999999999999988887 566777777888877777777777777777777777777777
Q ss_pred HHHHhhhhhhhhhhhh
Q 025130 193 SMIYCLDGKIDSLADK 208 (257)
Q Consensus 193 ~~V~~Le~Ki~~ie~k 208 (257)
..+..+|..+.+..++
T Consensus 238 ~~Ias~e~~aA~~re~ 253 (420)
T COG4942 238 NEIASAEAAAAKAREA 253 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777655544443
No 89
>PRK02119 hypothetical protein; Provisional
Probab=78.15 E-value=15 Score=27.94 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=32.6
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
.+..||..|..|+--|.......-+.|++-+..+......+..+.+.+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888777777777777777555555544444443333
No 90
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=77.65 E-value=2.5 Score=33.65 Aligned_cols=16 Identities=38% Similarity=0.808 Sum_probs=11.5
Q ss_pred hHhhhhheeeeeeecc
Q 025130 96 ATLGALGYGYMWWKGL 111 (257)
Q Consensus 96 A~vGavGYgYmwWKGw 111 (257)
+++.++=++|.|||-|
T Consensus 11 ~~v~~~i~~y~~~k~~ 26 (87)
T PF10883_consen 11 GAVVALILAYLWWKVK 26 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666789999976
No 91
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.63 E-value=28 Score=36.88 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH-----------HhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF-----------KVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~-----------~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
+..-++.|+.+=+++.+|+++..+-++.+.+.+..+..-+. ++..+++.++..++.|..+|+.+..+.+
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777788888888888888888877776654443 2677888899999999999998877777
Q ss_pred HHhH
Q 025130 211 ITNI 214 (257)
Q Consensus 211 ~tn~ 214 (257)
.-..
T Consensus 664 ~Q~~ 667 (717)
T PF10168_consen 664 YQQR 667 (717)
T ss_pred HHHH
Confidence 6443
No 92
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=77.23 E-value=34 Score=27.06 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHhhhhhhhh
Q 025130 186 HNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ 204 (257)
.=+..+..-...||.|+.+
T Consensus 80 ~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 80 QTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3344455555555555543
No 93
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=77.15 E-value=9.6 Score=34.42 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=32.3
Q ss_pred HHHHhhHHhHHHHHHHHHH--HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 151 QRIQNLNDKVEKQNEISKD--IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~--i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.||.++....+...++-+. .-+|+-+++..|++++.|+++++.-...|+.+++
T Consensus 139 arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 139 ARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444332 3466777777778888888877777777776654
No 94
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=76.98 E-value=32 Score=35.48 Aligned_cols=96 Identities=14% Similarity=0.240 Sum_probs=62.6
Q ss_pred CcchhHHHhHhhHHHHH-----------HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh--------HHHHHHHHHHHHH
Q 025130 112 SFADLMYVTRKSMATAV-----------SNLNKHLESVTEALTVAKKHLTQRIQNLNDK--------VEKQNEISKDIRK 172 (257)
Q Consensus 112 s~sDlMfVTkr~ms~Av-----------~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k--------ld~~~eis~~i~~ 172 (257)
.-++.+.-+-++|+++. ..+.-|+..|+..+.-..+.|..||..+... +++.....+.+..
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777654 3344455556666666677777777766543 5556666677777
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHH----hhhhhhhhhhh
Q 025130 173 NVEEACDDLFKVEHNLKDLQSMIY----CLDGKIDSLAD 207 (257)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~----~Le~Ki~~ie~ 207 (257)
...++++.++.+..||..|..... .++.||+.-+.
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k 451 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGK 451 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHH
Confidence 777888888888888877766553 45556654433
No 95
>PRK02793 phi X174 lysis protein; Provisional
Probab=76.82 E-value=15 Score=27.81 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.9
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.+.+||..|..++--|.......-+.|++-+..+......+..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888887777777777777775555544444444
No 96
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=76.72 E-value=60 Score=29.62 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=62.0
Q ss_pred chhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 114 ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 114 sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
+++|=....++.+ .+..++.|..++++.++++ +-++.++.+...|+..+.+=+.--++.+.--...++|-.|-+++|+
T Consensus 102 ~~l~esl~~~i~~-~~~aa~~i~~~~~~~~~~~-~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fke 179 (202)
T TIGR03513 102 ATLMQSLGNGINN-FEGAAKTLAPMTDSYAQQK-KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKE 179 (202)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445455555555 6777888888888888887 7788899999888888777554444333333445556677777777
Q ss_pred HHHhhhhhhhhh
Q 025130 194 MIYCLDGKIDSL 205 (257)
Q Consensus 194 ~V~~Le~Ki~~i 205 (257)
=++.|-..|.++
T Consensus 180 Q~~kLa~NL~sL 191 (202)
T TIGR03513 180 EMEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 97
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=76.49 E-value=28 Score=34.92 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=50.7
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.++..+-.++.+|.++-+.+++-+..-+.||+.+..||.++|+.-..|..|+..-.
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk 69 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRK 69 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 57888888999999999999999999999999999999999999999999988433
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.46 E-value=45 Score=31.48 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=37.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH------------------HHHhhhhHHHhhhhHHHH
Q 025130 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN------------------VEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 130 sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e------------------V~~v~~d~~~i~~dv~~v 191 (257)
.+-..|+.-.+.|..=++.|...++.++.-+.+..+.-..++++ +..++..+.....++...
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~ 228 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAK 228 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555555555544444444444444 444444444444444444
Q ss_pred HHHHHhhhhhhhhhhhh
Q 025130 192 QSMIYCLDGKIDSLADK 208 (257)
Q Consensus 192 ~~~V~~Le~Ki~~ie~k 208 (257)
+..+..|+.++.+++.+
T Consensus 229 k~~l~el~~el~~l~~~ 245 (325)
T PF08317_consen 229 KKELAELQEELEELEEK 245 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 99
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.20 E-value=25 Score=36.38 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=30.5
Q ss_pred chhHHHhHhh--HHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 025130 114 ADLMYVTRKS--MATAVSNLNKH---LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (257)
Q Consensus 114 sDlMfVTkr~--ms~Av~sv~kq---LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (257)
+||+.||-|. |.+-+..+-|. |.+....|......|..+++.+...|....+-....+
T Consensus 129 ~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 129 SDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred cceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888887664 33333333333 3344445555555566666666666655444444333
No 100
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=76.09 E-value=23 Score=31.50 Aligned_cols=64 Identities=17% Similarity=0.372 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 137 qVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
||...|+.+-.+|.+.+|.....|++. ++++.+++ .-++.+....+.++....-|+..+++.+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~e---I~~L~~~i----~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDE---IKQLEKEI----QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777776666555444421 22222222 23455666777777778888888876553
No 101
>PRK00846 hypothetical protein; Provisional
Probab=75.79 E-value=23 Score=27.63 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
-..+.+||+.|..++--|...+....+.|+.-+..+.. ++..+.-|-.|+..++
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~-------L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGAR-------NAELIRHLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 35688999999999988888888888888777655555 4444455555555554
No 102
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=75.69 E-value=18 Score=28.28 Aligned_cols=60 Identities=25% Similarity=0.414 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
...+|.+..+++.+-.+ .++++++|..--.. ..+.+.+..++..+..-+..||.++..++
T Consensus 35 d~~~r~l~~~~e~lr~~---rN~~sk~I~~~~~~-~~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 35 DQERRELQQELEELRAE---RNELSKEIGKLKKA-GEDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHT-TCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655554 34444444432110 02333333344444444444444444443
No 103
>PRK04325 hypothetical protein; Provisional
Probab=75.58 E-value=19 Score=27.40 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=30.2
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.+..||..|..|+--|...+...-+.|++-+..+......+..+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888887777777777777765555544444444
No 104
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.58 E-value=7.9 Score=28.57 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=15.1
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 025130 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (257)
|+.+..++....-.....+++..+++.+++.|...+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333334444444444444444443
No 105
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=75.47 E-value=16 Score=31.46 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH-HhhhhHHHhhhhHHH
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE-EACDDLFKVEHNLKD 190 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~-~v~~d~~~i~~dv~~ 190 (257)
+.+++++..+-+.|..-|+....++.+..++++.=-+.|. -+++|++++......
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655555544444433333332 356666666655555
No 106
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=75.41 E-value=18 Score=26.78 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025130 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 125 s~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
...++++.+.++++...-...|+. .|..+...|++..++.+++.-||..+
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~~---~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRKS---LIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHhhccChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666777777766444344444 45566678999999999998887665
No 107
>COG5283 Phage-related tail protein [Function unknown]
Probab=75.09 E-value=43 Score=37.72 Aligned_cols=110 Identities=12% Similarity=0.212 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
|-+++...++--....+.+..||+-|+ .|.+.+-+.++.++..-+..++|+.|+-+-+...+.+.+.+..-....|.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555444444444444555555553 58899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHH-------hHHHHHHHHHhhcccCCChHH
Q 025130 201 KIDSLADKQDIT-------NIGMYLLCNFVDGKKGRTTES 233 (257)
Q Consensus 201 Ki~~ie~kQd~t-------n~GV~~Lc~f~~~~~~~~~~~ 233 (257)
++.++-..++.+ -.++-.+-..+...+..||+.
T Consensus 107 ~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ 146 (1213)
T COG5283 107 KLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQ 146 (1213)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 999999999977 455555555555555655554
No 108
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.02 E-value=33 Score=38.07 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=35.5
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHH-HHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNV-EEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV-~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
|...+|+..-...|.+...+..++++. ..+..+++++..+++.|..-|+.||.-+.++..
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666555 555555555666666666555555555555544
No 109
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.89 E-value=20 Score=27.87 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
...|.+||..|.+++--|......+-+.|++-+-.+++...-++.+-..+..+
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34688999999999999988888888888888766666655555554444433
No 110
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=74.84 E-value=5.8 Score=38.43 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=32.2
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
|+..|...+..+....-....+..+|.-++.|++..+-.|.+++..|..||.....
T Consensus 103 lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 103 LSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSSS 158 (326)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCCC
Confidence 45566666677777777777777888888888888888888888888888876553
No 111
>PRK00736 hypothetical protein; Provisional
Probab=74.33 E-value=20 Score=26.86 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=28.6
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+..||+.|..|+--|.......-+.|+.-+..+..+...+..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888777777777777776665555444444444
No 112
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=74.08 E-value=25 Score=35.75 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
..+|+.|..--+++..+++.++.++.+..+....++++=..++..+.++..++..+++.|+
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777788888888888888888888888888888888888888877777776664
No 113
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.96 E-value=31 Score=40.54 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=64.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+.-+-..+.+..+.+..+||.+.+|++.....++....-.....+--..++.+++....|++..+.++..||.|+.+.+.
T Consensus 1363 ~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k 1442 (1930)
T KOG0161|consen 1363 KKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEK 1442 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555688889999999999999999888888888887778888889999999999999999999988876554
No 114
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=73.30 E-value=49 Score=33.09 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=31.4
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025130 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqR 152 (257)
=--|+.|++-+..+-+.+|.+.+.+...|+...+|
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~R 239 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQR 239 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34578999999999999999999999999988877
No 115
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=73.19 E-value=11 Score=33.27 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhHH---hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 143 TVAKKHLTQRIQNLND---KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~---kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
-.+-.|+++||+++.. +|.++.+.-.+|.+.|.+..+++..|++++..|
T Consensus 110 l~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 110 LPTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555556665554 455555555666666666666666666655543
No 116
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=72.77 E-value=14 Score=31.52 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=8.3
Q ss_pred Hhhhhheeeeeeec
Q 025130 97 TLGALGYGYMWWKG 110 (257)
Q Consensus 97 ~vGavGYgYmwWKG 110 (257)
+++++|-+|+||..
T Consensus 8 ~~a~~~~~~~~~~~ 21 (135)
T TIGR03495 8 GLLVAGLGWQSQRL 21 (135)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445557778875
No 117
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=72.63 E-value=14 Score=29.82 Aligned_cols=31 Identities=3% Similarity=0.139 Sum_probs=13.4
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
++.++++.+..++++.++=.+..++||..++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444333334444443333
No 118
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.62 E-value=39 Score=25.57 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.|.+.+.-|..|+|.++.|+.......+.+..|=...-.-+..-..++..++.-++.|...+++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677778888888888888888888887777655555555556667777777777777666543
No 119
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.26 E-value=49 Score=33.99 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=15.6
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+++.+++.++.....+++.++.-+..++.++.++
T Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 435 NELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 120
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=72.09 E-value=21 Score=31.74 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=26.7
Q ss_pred HHHHhhHHHHH----HHHHHHHHHHHHHHhhHHhHHHHHHH---HHHHHHHHHHhhhhHHHhhh
Q 025130 130 NLNKHLESVTE----ALTVAKKHLTQRIQNLNDKVEKQNEI---SKDIRKNVEEACDDLFKVEH 186 (257)
Q Consensus 130 sv~kqLeqVs~----sL~~tKkhLsqRI~~vd~kld~~~ei---s~~i~~eV~~v~~d~~~i~~ 186 (257)
.|-+.|+++.. .+..++++|...|+.+..+++...++ ++.++++++.+..+|++|..
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333 33445666666666666665444433 34455666666665555544
No 121
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=71.87 E-value=16 Score=28.85 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHh
Q 025130 56 DAIKDQLNRLKFEC 69 (257)
Q Consensus 56 d~L~aQV~~L~~El 69 (257)
..|+.|.+.|..++
T Consensus 16 ~~l~~~~~~l~~~~ 29 (105)
T cd00632 16 QAYIVQRQKVEAQL 29 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555555
No 122
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=71.41 E-value=12 Score=36.30 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki 202 (257)
...+..+.+.+..||+++
T Consensus 171 ~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 171 EKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 334444444444444443
No 123
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=71.30 E-value=78 Score=28.46 Aligned_cols=77 Identities=12% Similarity=0.259 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 123 SMATAVSNLNKHLESVTEALTVA---KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~t---KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
.|.+-...++.+|..+..+-..+ ..++..||..|..++.+..-=...-...|..+...+..+..++...+.....+.
T Consensus 145 eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 145 ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554443333222 234444444444444444333333333444444444444444444443333333
No 124
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=71.19 E-value=51 Score=30.14 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=63.9
Q ss_pred CcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHHHHHH--HHHHHHHhhhhHHHhhh
Q 025130 112 SFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKH---LTQRIQNLNDKVEKQNEISKD--IRKNVEEACDDLFKVEH 186 (257)
Q Consensus 112 s~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkh---LsqRI~~vd~kld~~~eis~~--i~~eV~~v~~d~~~i~~ 186 (257)
.|....---+.++.+-+....++++++.+.+...|+. |.++|..+..+++........ .+..|...-++.+. .+
T Consensus 85 ~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~s 163 (225)
T COG1842 85 DLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SS 163 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hh
Confidence 3444444567789999999999999888888777764 567888888887766554333 33556666666555 44
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHHHh
Q 025130 187 NLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
.+..+ .-++.|++++|..=+...
T Consensus 164 a~~~f----er~e~kiee~ea~a~~~~ 186 (225)
T COG1842 164 AMAAF----ERMEEKIEEREARAEAAA 186 (225)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHhH
Confidence 44444 445777777776554433
No 125
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=71.14 E-value=51 Score=36.53 Aligned_cols=93 Identities=17% Similarity=0.300 Sum_probs=64.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
....-++|-++...+..+...+.+++..+..++++..+-.....++..+.+ ..+..+...++.-+..++.+|+.++.
T Consensus 258 l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~---~~~~~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 258 LQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELR---DELNKELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888888888888888877777666666665555 34455666666666677777777776
Q ss_pred -hhHHHhHHHHHHHHHh
Q 025130 208 -KQDITNIGMYLLCNFV 223 (257)
Q Consensus 208 -kQd~tn~GV~~Lc~f~ 223 (257)
+..|-+.+|.-+++=+
T Consensus 335 ~~~~ye~~~i~~~~~~~ 351 (1201)
T PF12128_consen 335 QKKDYEDADIEQLIARV 351 (1201)
T ss_pred HHHHHHHCCHHHHHHHH
Confidence 4456667777776643
No 126
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.91 E-value=76 Score=28.18 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
.....++..|++.+..+++++.+-.+.-++++.+.+..+..-..++.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777777777777777777766666655
No 127
>PRK03918 chromosome segregation protein; Provisional
Probab=70.87 E-value=74 Score=33.18 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=6.6
Q ss_pred HHHHHHhhHHhHHHH
Q 025130 149 LTQRIQNLNDKVEKQ 163 (257)
Q Consensus 149 LsqRI~~vd~kld~~ 163 (257)
|..+|+.+..++++.
T Consensus 638 l~~~i~~l~~~~~~l 652 (880)
T PRK03918 638 TEKRLEELRKELEEL 652 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 128
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.50 E-value=28 Score=27.72 Aligned_cols=45 Identities=16% Similarity=0.371 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025130 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
.-|.+..||++|.. |- +.|.+++.++-.+..--|+|++.++.+++
T Consensus 15 QLrafIerIERlEe---Ek----~~i~~dikdvy~eakg~GFDvKa~r~iir 59 (85)
T COG3750 15 QLRAFIERIERLEE---EK----KTIADDIKDVYAEAKGHGFDVKAVRTIIR 59 (85)
T ss_pred HHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 34555566666543 23 34456666677777789999999998885
No 129
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.10 E-value=31 Score=32.58 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=8.9
Q ss_pred HHhhHHhHHHHHHHHHHHHHHH
Q 025130 153 IQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV 174 (257)
|++=|.++.+..+-.+.++++|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei 54 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEI 54 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333333333
No 130
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=69.95 E-value=25 Score=26.22 Aligned_cols=15 Identities=7% Similarity=0.527 Sum_probs=9.4
Q ss_pred HHHHHHHhhHHhHHH
Q 025130 148 HLTQRIQNLNDKVEK 162 (257)
Q Consensus 148 hLsqRI~~vd~kld~ 162 (257)
++.+||.+++.++|+
T Consensus 3 ~i~e~l~~ie~~l~~ 17 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666665
No 131
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=69.89 E-value=19 Score=28.12 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
-|.+-.||++|.... ++| .+++.+|-....--|+|++.++++|.-
T Consensus 6 Lr~~ieRiErLEeEk---~~i----~~dikdVyaEAK~~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 6 LRQFIERIERLEEEK---KAI----SDDIKDVYAEAKGNGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 355566666665543 333 444445555556789999999999874
No 132
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=69.88 E-value=7.2 Score=40.15 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=55.1
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL-------~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (257)
|-++|=.+|++.++++|..+.+.. ...=.++.+||+++++++|+...=.-.-+.|+-.+ +..+..-..+|
T Consensus 364 AD~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds~~ 443 (550)
T PF00509_consen 364 ADLKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDSNV 443 (550)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHHHH
Confidence 468999999999999999988754 33345789999999999999876665666664443 33444445555
Q ss_pred HHHHHHHH
Q 025130 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
.++++.|+
T Consensus 444 ~~L~ekvk 451 (550)
T PF00509_consen 444 NNLYEKVK 451 (550)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 133
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=69.85 E-value=25 Score=34.23 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=10.5
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 181 LFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+.+|=.||+.+..+=..|-..|.-+.
T Consensus 87 V~~it~dIk~LD~AKrNLT~SIT~Lk 112 (383)
T PF04100_consen 87 VQEITRDIKQLDNAKRNLTQSITTLK 112 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 134
>PHA01750 hypothetical protein
Probab=69.22 E-value=17 Score=28.17 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=23.2
Q ss_pred hhHHHhHhhHHHHHHHHH-HhhHHHHHHHHHHH
Q 025130 115 DLMYVTRKSMATAVSNLN-KHLESVTEALTVAK 146 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~-kqLeqVs~sL~~tK 146 (257)
.+-|--|.++.||+..+- +-|+++-..|+++|
T Consensus 23 qlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 23 QLYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567889999998754 45777777777776
No 135
>PRK02224 chromosome segregation protein; Provisional
Probab=69.16 E-value=1.4e+02 Score=31.37 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhHHhHHH
Q 025130 145 AKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~ 162 (257)
.++.+..+++.+...|++
T Consensus 181 ~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555444
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.96 E-value=18 Score=33.33 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
..+.||.++|+.+++...+++.+++--..|=..|+
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888877765555443443
No 137
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=68.83 E-value=39 Score=28.32 Aligned_cols=54 Identities=9% Similarity=0.195 Sum_probs=34.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHH-------hHHHHHHHHHHHHHHHHHhhhhHH
Q 025130 129 SNLNKHLESVTEALTVAKKHLTQRIQNLND-------KVEKQNEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 129 ~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~-------kld~~~eis~~i~~eV~~v~~d~~ 182 (257)
+.+..|++.+...+...|+++.+--|+.+. ++||..+-...+...+..+++|++
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVs 64 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVS 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 457788889999999998888866665554 456554444444444444444443
No 138
>PRK03918 chromosome segregation protein; Provisional
Probab=68.80 E-value=44 Score=34.77 Aligned_cols=65 Identities=22% Similarity=0.364 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH---HHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR---KNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~---~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
.++..++.+...++.+..+|+.+...+.+..++...+. .++.++..+++.+...+..+...+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~ 226 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888899999998888888766655544322 334444444444444444444333333
No 139
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=68.70 E-value=78 Score=30.39 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred hhhhhHhhhhheeeeeeeccCcchhHHHhHhhHHHHHHH---HHHhhHHHHHHHHH-HHHHHHHHHHhhHHhHHHHHHHH
Q 025130 92 MIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSN---LNKHLESVTEALTV-AKKHLTQRIQNLNDKVEKQNEIS 167 (257)
Q Consensus 92 ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~s---v~kqLeqVs~sL~~-tKkhLsqRI~~vd~kld~~~eis 167 (257)
..|-++.-+.|-.|.|| .++..|-.+ .+..||.|.+.+.+ .-..|...|..+..++++|+.-.
T Consensus 24 Gp~Gl~ml~AgA~Y~~y-------------Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i 90 (301)
T PF06120_consen 24 GPPGLVMLGAGAWYYFY-------------QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAI 90 (301)
T ss_pred chHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhH---------------HHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhH
Q 025130 168 KDIRKNVEEACDDL---------------FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (257)
Q Consensus 168 ~~i~~eV~~v~~d~---------------~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (257)
+..+++|..++..+ ..+...+.++.+..+.|...-..++..|..-+.
T Consensus 91 ~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q 152 (301)
T PF06120_consen 91 EDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQ 152 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 140
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.68 E-value=1.1e+02 Score=35.24 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=17.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025130 126 TAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKkhLsq 151 (257)
+-.+.+.++++.+....+++++++..
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777776553
No 141
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=68.48 E-value=75 Score=27.13 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=65.4
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH---HHHH----HHHHHHHH-HHhhhhHHHh
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK---QNEI----SKDIRKNV-EEACDDLFKV 184 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~---~~ei----s~~i~~eV-~~v~~d~~~i 184 (257)
+.|+|.=.-++..+-++.+-..|++++..=..+......=-+.+...+.. ...+ ++..++.. .....-+..+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~ 102 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67888888999999999999999988887777765555444444444322 1123 33333333 4444555667
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
-.-+..|+.+++.+..||.++|-.
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888999999999999888754
No 142
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=68.38 E-value=73 Score=29.18 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=50.1
Q ss_pred hhHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhh-------HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh---HH
Q 025130 122 KSMATAVSNLN--KHLESVTEALTVAKKHLTQRIQNL-------NDKVEKQNEISKDIRKNVEEACDDLFKVEHN---LK 189 (257)
Q Consensus 122 r~ms~Av~sv~--kqLeqVs~sL~~tKkhLsqRI~~v-------d~kld~~~eis~~i~~eV~~v~~d~~~i~~d---v~ 189 (257)
|.|-+|...++ +.|+..++.|-.|+..|.-=|+.- =+-+|.+..++..+.++...+.....++-.. ..
T Consensus 26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~ 105 (214)
T PRK11166 26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA 105 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56777777765 777888888888888776443322 1224444445555555555555544432222 44
Q ss_pred HHHHHHHhhhhhhhhhhhh
Q 025130 190 DLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~k 208 (257)
.++..+......+.++..+
T Consensus 106 e~~~L~~~~~~fL~~v~~~ 124 (214)
T PRK11166 106 DARELVTDTRAFLADVPEH 124 (214)
T ss_pred HHHHHHHHHHHHHHHhHhh
Confidence 5555555555555555443
No 143
>PRK13694 hypothetical protein; Provisional
Probab=68.37 E-value=29 Score=27.63 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025130 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
..-|.+-.||++|+. +-++|+..|++--.+ -.--|+|++.++++|.-
T Consensus 12 ~~Lr~fIERIERLEe---Ekk~i~~dikdVyaE----AK~~GfD~K~~r~ii~l 58 (83)
T PRK13694 12 EQLRAFIERIERLEE---EKKTISDDIKDVYAE----AKGNGFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHhcCCcHHHHHHHHHH
Confidence 334455566666654 344555555544444 45679999999998863
No 144
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=68.36 E-value=75 Score=30.63 Aligned_cols=56 Identities=13% Similarity=0.255 Sum_probs=43.5
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.++.++|..++..+.++..-.+.-++-++.+... +...+..|..-|..||.||..+
T Consensus 332 ~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 332 AEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 3777888888888777777777777777777744 7788888888899999998765
No 145
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.30 E-value=1.1e+02 Score=34.36 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=34.9
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
..-|.++......+...+++..+.+...+..+.-==..++....+..++...-+.+..+++..+..+..+++.+
T Consensus 880 l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1311)
T TIGR00606 880 LQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNI 953 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666666666666666666555544332222222333333333333333444444444444443333
No 146
>PRK10698 phage shock protein PspA; Provisional
Probab=68.30 E-value=65 Score=29.10 Aligned_cols=85 Identities=12% Similarity=0.232 Sum_probs=46.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH--HHHHHhhhhHHH--hhhhHHHHHHHHHhhhhhhh
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR--KNVEEACDDLFK--VEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~--~eV~~v~~d~~~--i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|..-...|+.-++....+-..|..++..|..|+.+...=...+. ......+..+.. -+.|..+--..+..+|.||+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~ 176 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRID 176 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 55555555555555555666666666666666665543222221 111111111111 13455556667777899999
Q ss_pred hhhhhhHHH
Q 025130 204 SLADKQDIT 212 (257)
Q Consensus 204 ~ie~kQd~t 212 (257)
++|..-+..
T Consensus 177 ~~Ea~aea~ 185 (222)
T PRK10698 177 QMEAEAESH 185 (222)
T ss_pred HHHHHHhHh
Confidence 999887764
No 147
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.28 E-value=74 Score=32.69 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=12.8
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
++..+++.++..+..+++.++.-...++.++.+
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 460 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEA 460 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 148
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=68.05 E-value=36 Score=33.94 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=47.1
Q ss_pred HhhhhheeeeeeeccCcchhHHHhHhhH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH------HHHHHH
Q 025130 97 TLGALGYGYMWWKGLSFADLMYVTRKSM---ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVE------KQNEIS 167 (257)
Q Consensus 97 ~vGavGYgYmwWKGws~sDlMfVTkr~m---s~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld------~~~eis 167 (257)
...+++++|. ---.|.|=+.-|+..+ ...++++.+|.+.+.+++..+++ +-++++++.++ +-..+.
T Consensus 93 ~~aaIi~~f~--GN~~~h~gV~~t~~si~~an~tv~~l~nqv~~l~~al~~t~~---~~L~~L~~il~~~~~~~~~~~~~ 167 (418)
T cd07912 93 CCAAIGVGLY--GNDETHDGVVQLTYSLRNANHTVAGIDNQTSDTEASLNVTVE---PQLTNLEDIFDARVNKTDYLQIV 167 (418)
T ss_pred HHHHHHHHhh--ccHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhHhHHHHHhCCCcchhhHHHHH
Confidence 3355555443 1223455444444444 66677777888888888877776 44555555443 223344
Q ss_pred HHHHHHHHHhhhhHHHh
Q 025130 168 KDIRKNVEEACDDLFKV 184 (257)
Q Consensus 168 ~~i~~eV~~v~~d~~~i 184 (257)
+.++..++.+..++..+
T Consensus 168 ~~~q~~~~n~~~~~~~~ 184 (418)
T cd07912 168 QGLQQMATNAAQQLTGI 184 (418)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 55566666665555555
No 149
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=67.87 E-value=30 Score=33.96 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=9.2
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 025130 133 KHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqR 152 (257)
++|+.++..|+++-.||.+-
T Consensus 293 ~Nle~lt~~LA~as~~l~~l 312 (370)
T PLN03094 293 KEVEKLTRVAAEASEDLRRL 312 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444454444444444
No 150
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=67.75 E-value=42 Score=31.45 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV 160 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kl 160 (257)
|..-..-+..+|+.+...|....+..++....|...+
T Consensus 4 l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l 40 (304)
T PF02646_consen 4 LEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQL 40 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 151
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.61 E-value=55 Score=31.26 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=18.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
..|+.--+.|.+-++.|...++.++.=+.+..+--..++.++..+
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L 191 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQL 191 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443333333
No 152
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=67.57 E-value=48 Score=24.55 Aligned_cols=34 Identities=12% Similarity=0.266 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd 157 (257)
+-+-|..+...|+.+...+..-++--...+...+
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~ 38 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456778888888888888887776666666666
No 153
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=67.20 E-value=49 Score=24.55 Aligned_cols=62 Identities=23% Similarity=0.412 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
|....+.|.+.|+..+..|.+ +...=-.+.-.+-+.+..+..++..++..+..|...+.++.
T Consensus 24 i~~~~~~L~~~i~~~~~eLr~---~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 24 IRQLENKLRQEIEEKDEELRK---LVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455555554444432 22222234555556666666666666666666666666554
No 154
>PRK02224 chromosome segregation protein; Provisional
Probab=67.09 E-value=90 Score=32.75 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=5.8
Q ss_pred chHHHHHHHHH
Q 025130 32 PELLRELQSLV 42 (257)
Q Consensus 32 sd~~g~lq~~l 42 (257)
|-++..+.-++
T Consensus 37 Stil~ai~~~l 47 (880)
T PRK02224 37 SSLLEACFFAL 47 (880)
T ss_pred HHHHHHHHHHh
Confidence 55565555444
No 155
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.87 E-value=1.2e+02 Score=30.00 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=38.0
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025130 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
+|+++-+.-|.+.-+.. ..|..-+|.|..-++||..-+++|+.++...++-+.-.++.+.|..+|.++
T Consensus 218 klR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 45555555554443332 235555556666666666666666666555555555556666666666555
No 156
>PRK04098 sec-independent translocase; Provisional
Probab=66.81 E-value=26 Score=30.84 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRI 153 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI 153 (257)
|-.+...+++-+..+-..+..+|.++.+-|
T Consensus 25 LP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei 54 (158)
T PRK04098 25 LPQAMVDIAKFFKAVKKTINDAKSTLDKEI 54 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666665544
No 157
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=66.79 E-value=41 Score=25.98 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=39.5
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~ 164 (257)
-+||.+--.-|-+-|.|+.+..+-.-..+..|||.+...+|+..
T Consensus 11 pkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLE 54 (73)
T KOG4117|consen 11 PKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLE 54 (73)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 47899999999999999999999999999999999999888763
No 158
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.45 E-value=67 Score=30.48 Aligned_cols=68 Identities=18% Similarity=0.322 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
..|...+.+|.+.|..+..+.++..+--...-.+.+..+.++.++..+.+++.....-....++++..
T Consensus 67 ~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 67 EELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555556666555555555555555666666666667777777776666666666666654
No 159
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=66.44 E-value=61 Score=31.53 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
|++=...|+++-+...++++.+..-+++|.--...=++.+.++...+.+.
T Consensus 9 L~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 9 LQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445566666666777777777766666555444445555555555554
No 160
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=66.31 E-value=69 Score=25.94 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=2.9
Q ss_pred HHHhhHHh
Q 025130 152 RIQNLNDK 159 (257)
Q Consensus 152 RI~~vd~k 159 (257)
+++.+..+
T Consensus 90 ~~~~~~~~ 97 (202)
T PF01442_consen 90 RAEELKER 97 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 161
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=65.98 E-value=98 Score=27.57 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
-++++...|..++.|+-+.++-...++.+..+....+++...+++.+++-+...|-+-.++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777776666666666665555555666666666666666666666555443
No 162
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=65.75 E-value=60 Score=25.06 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
.+|.++|..+++.+.+-+++-...++...+=++.+++ +.+....+++-++.=+.++..|+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~----~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRS----TNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999888777666555544432 22233344444555555555444
No 163
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.72 E-value=25 Score=32.16 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH--HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN--VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e--V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
+.+..++....+.+++.+..+...+-| .|-+| +.-=+..+..+-+|++.+++-+.-||.|++++|.|
T Consensus 133 ~~~~~~l~~~~~~l~~~~~~~q~~~Ae------~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 133 QSVVRALRSGSRFLKHGLKQLQRNLAE------AITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666554443332 22233 11123456788899999999999999999999876
No 164
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=65.59 E-value=82 Score=32.60 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNE 165 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~e 165 (257)
.+..++...+..-|+.--..+...-+.|+.+|.+|.+++|-+.+
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEq 379 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQ 379 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56677788888888776677777778999999999999876643
No 165
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=65.32 E-value=84 Score=26.53 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH--Hhhhh----HHHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF--KVEHN----LKDLQSMI 195 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~--~i~~d----v~~v~~~V 195 (257)
.++.+-.+++..+++++-..=...+.+..++-+..+..|+++.+.-..+.+....+..+-. -++++ +.......
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 5666678888888888888878888999999999999999999999999988777765532 23333 44555666
Q ss_pred Hhhhhhhhh
Q 025130 196 YCLDGKIDS 204 (257)
Q Consensus 196 ~~Le~Ki~~ 204 (257)
..||.+|..
T Consensus 103 ~~L~k~I~~ 111 (126)
T PF09403_consen 103 NKLDKEIAE 111 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666653
No 166
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.23 E-value=59 Score=27.04 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=16.7
Q ss_pred HhhHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHhhHHh
Q 025130 121 RKSMATAVSNLNKHLESVTEA---LTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~s---L~~tKkhLsqRI~~vd~k 159 (257)
|-.+++=.+++...||..-.| |..-|+.|....+.|...
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q 52 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQ 52 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH
Confidence 444555555555555544332 334444444444443333
No 167
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=65.20 E-value=95 Score=27.10 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=39.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.+.+.+.|+.+.+.+..-+.+...=+..|..=-+++..=....+..+.++..-+..-+.+|..++.-+..+.++|.
T Consensus 105 ~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 105 KEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444455555555566666666666666777777666666665553
No 168
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=64.90 E-value=31 Score=27.41 Aligned_cols=28 Identities=14% Similarity=0.510 Sum_probs=22.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 025130 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 130 sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld 161 (257)
+|.+++|.+.+.|+..++ |++.++.+|-
T Consensus 2 ~V~~eId~lEekl~~cr~----~le~ve~rL~ 29 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRR----RLEAVESRLR 29 (85)
T ss_pred cHHHHHhhHHHHHHHHHH----HHHHHHHHHc
Confidence 578899999999988876 5677887775
No 169
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=64.76 E-value=40 Score=22.67 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=25.5
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025130 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
+.|+.+...+-++..+...|..+|.+=..=+.+|..+++..+.-+.
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~ 51 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVK 51 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666665554445555555544444433
No 170
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=64.32 E-value=1.6e+02 Score=30.07 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=20.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025130 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 129 ~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~ 163 (257)
+.+...++.+.+......+++.++++.+...+.+.
T Consensus 88 ~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 122 (779)
T PRK11091 88 SRLVAKLEEMRERDLELNVQLKDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666667777766665443
No 171
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=64.00 E-value=49 Score=25.83 Aligned_cols=15 Identities=0% Similarity=0.377 Sum_probs=5.8
Q ss_pred HHHHHHhhHHHHHHH
Q 025130 128 VSNLNKHLESVTEAL 142 (257)
Q Consensus 128 v~sv~kqLeqVs~sL 142 (257)
++.+..+.+.++.++
T Consensus 13 Ik~vd~KVdaLq~~V 27 (75)
T PF05531_consen 13 IKAVDDKVDALQTQV 27 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 172
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=63.40 E-value=47 Score=27.12 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=18.3
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~tKkhLsq 151 (257)
||++-++++.+.+||.++++.|.+-|+++..
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~ 33 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQE 33 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666655555443
No 173
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.15 E-value=1.1e+02 Score=30.47 Aligned_cols=76 Identities=13% Similarity=0.315 Sum_probs=45.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH--------------HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh------
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQ--------------RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN------ 187 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsq--------------RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d------ 187 (257)
+..+-+...++.+++.+-|.++.. |.++|++.+ ++.++.=++|+..++.++..+..-
T Consensus 221 l~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeql---Nd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~ 297 (395)
T PF10267_consen 221 LREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQL---NDLTELHQNEIYNLKQELASMEEKMAYQSY 297 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444444444444444444444333 444444444 345555677777777777555443
Q ss_pred --HHHHHHHHHhhhhhhhhhh
Q 025130 188 --LKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 188 --v~~v~~~V~~Le~Ki~~ie 206 (257)
...|++.++..-.||..||
T Consensus 298 eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 4567888888888999999
No 174
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.03 E-value=70 Score=27.90 Aligned_cols=76 Identities=11% Similarity=0.224 Sum_probs=58.3
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh-hhhhhhhhhhhhHHHhHHHHHHHHHh
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC-LDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~-Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
++..+|+.|+.+|.....+...+-+.-.++..|...+|.-+..+-..-.+ |+..+..+...-+....+...|-+.+
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~~ 84 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKYT 84 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888888888888999888888888777777 77777777766666666666665544
No 175
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.02 E-value=1.1e+02 Score=27.79 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
|.++...++++...+++...=-..-...-..+..++..+..|++.....-..|+.++..+..
T Consensus 70 ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 70 KARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 33333444443333333332222223333334444444445555555555555555555444
No 176
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=62.57 E-value=79 Score=37.21 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=14.6
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 176 EACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.+..+++....++..+..-+..|+.+|.+.+.
T Consensus 855 ~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 855 SLLTSLDSVSTNIAKLEIKLSELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33334444444444444444555555554443
No 177
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=62.38 E-value=66 Score=28.05 Aligned_cols=51 Identities=29% Similarity=0.407 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHH--HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025130 135 LESVTEALTVAKKH--LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 135 LeqVs~sL~~tKkh--LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
=+.+++.|....+| +.+||+.|....+...+-++.|.+++.+++.+|..+-
T Consensus 11 d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 11 DDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 5677777777777777777777777766666555543
No 178
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=62.38 E-value=1.2e+02 Score=32.38 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=12.6
Q ss_pred HhhhhhhhhhhhhhHHHhHHHHHHHHHh
Q 025130 196 YCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 196 ~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
..++..+.+=.-=-+.-+.++..+|.++
T Consensus 736 ~~~~~~vg~C~Pl~~~~d~~~~~~C~~i 763 (806)
T PF05478_consen 736 SEITNDVGRCQPLANIYDSAVVILCSRI 763 (806)
T ss_pred HHHHccCcCCccHHHHHHhHHHHHHHHH
Confidence 3333333333333344455555566544
No 179
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=62.17 E-value=91 Score=25.86 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 162 KQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
+.-.-.+.|..+...++..+..+...-...-..+..+..+|.+|.+-|+
T Consensus 44 ~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveN 92 (121)
T PF06320_consen 44 EAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVEN 92 (121)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 3344444444444444444444444444444455555555554444443
No 180
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=62.06 E-value=1.2e+02 Score=31.58 Aligned_cols=62 Identities=13% Similarity=0.268 Sum_probs=53.9
Q ss_pred eeeeccCcchh--HHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Q 025130 106 MWWKGLSFADL--MYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS 167 (257)
Q Consensus 106 mwWKGws~sDl--MfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis 167 (257)
+.=+|+|.+|| |-.-|--|..-.+-++-+-+.+..++-+++.+...+++.|.+++.+.+-+.
T Consensus 360 ~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~ 423 (622)
T COG5185 360 LRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLI 423 (622)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888886 889999999999999999999999999999999999999999877665443
No 181
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=62.04 E-value=40 Score=29.47 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=26.5
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
|+.+...-++.-+|.+..++|...++..+..+..++..+-.-|..|+
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566666666655555555555555555555555554
No 182
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=61.40 E-value=54 Score=26.37 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=8.7
Q ss_pred hhhhheeeeeeecc
Q 025130 98 LGALGYGYMWWKGL 111 (257)
Q Consensus 98 vGavGYgYmwWKGw 111 (257)
+.+..+||+||-.+
T Consensus 12 lvl~L~~~l~~qs~ 25 (110)
T PF10828_consen 12 LVLGLGGWLWYQSQ 25 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556677888654
No 183
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=61.13 E-value=40 Score=25.04 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhHHhHHH
Q 025130 145 AKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~ 162 (257)
+|+.|..+.+.+-+++++
T Consensus 27 ~R~~l~~~~~~~~~~~~~ 44 (74)
T PF12732_consen 27 TREKLKDKAEDLKDKAKD 44 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 184
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.11 E-value=47 Score=28.17 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=13.9
Q ss_pred hHHHHHHH--HHHHHHh-hhhcCCCeEEEe
Q 025130 55 TDAIKDQL--NRLKFEC-QRASSGQIFVRN 81 (257)
Q Consensus 55 ~d~L~aQV--~~L~~El-~Lassr~iTVvn 81 (257)
.+.|..+| .....=| .|+....|+.=.
T Consensus 23 ~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~ 52 (169)
T PF07106_consen 23 FDNLHNKVGKTAVQKALDSLVEEGKIVEKE 52 (169)
T ss_pred HHHHHhhccHHHHHHHHHHHHhCCCeeeee
Confidence 34455444 2333444 566666666543
No 185
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=61.08 E-value=1.1e+02 Score=26.27 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHh-hhhcC
Q 025130 55 TDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 55 ~d~L~aQV~~L~~El-~Lass 74 (257)
...+..|++.|.+=| .++..
T Consensus 19 ~~~~~~~l~~l~~ai~~~~~~ 39 (204)
T PF04740_consen 19 LKELKEQLESLQKAINQFISS 39 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 344555556666655 55544
No 186
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=60.84 E-value=1.4e+02 Score=27.71 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=10.4
Q ss_pred chHHHHHHHHHHHHHh
Q 025130 54 FTDAIKDQLNRLKFEC 69 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El 69 (257)
....+.+|+.+|..++
T Consensus 82 ~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 82 DAAELESQVLRLEAEV 97 (423)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455667777777666
No 187
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=60.77 E-value=75 Score=32.12 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
...++.++..++.++.+++.+.......|..|+.++.
T Consensus 311 vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~ 347 (522)
T PF05701_consen 311 VESLRSELEKEKEELERLKEREKEASSEVSSLEAELN 347 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH
Confidence 3334444444444444444444444444444444443
No 188
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=60.72 E-value=1.6e+02 Score=28.75 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh----
Q 025130 126 TAVSNLNKHLESVTEALTVAKK--------------HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN---- 187 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKk--------------hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d---- 187 (257)
+..+.+.+.+.++.+.|....+ +....|..|-.++.+.++-++.++.-|.++-.|+.+...=
T Consensus 25 ~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNL 104 (383)
T PF04100_consen 25 ELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNL 104 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443 3345567777777777888888888888888887775432
Q ss_pred ---------HHHHHHHHHhhhhhhhhhhhhhHHH-hHHHHHHHHHhhcccCCChHH
Q 025130 188 ---------LKDLQSMIYCLDGKIDSLADKQDIT-NIGMYLLCNFVDGKKGRTTES 233 (257)
Q Consensus 188 ---------v~~v~~~V~~Le~Ki~~ie~kQd~t-n~GV~~Lc~f~~~~~~~~~~~ 233 (257)
++.+-..+..|+.-+..=.+++-.. ...|.-|.++...-+ .+|+.
T Consensus 105 T~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yk-si~~I 159 (383)
T PF04100_consen 105 TQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYK-SIPQI 159 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHccc-CcHHH
Confidence 2222333444444444333333222 345555666555433 35553
No 189
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=60.66 E-value=1.1e+02 Score=30.38 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHHHHHHhh-------hhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 141 ALTVAKKHLTQRIQNLNDKVE-KQNEISKDIRKNVEEAC-------DDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld-~~~eis~~i~~eV~~v~-------~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.+......|...|++|..++- +...+.+..++|=.... +-++--..+|.++++-+..+|.||+
T Consensus 223 eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 223 EIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444455556666655322 33344444443311111 1112233455555555555555554
No 190
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=60.11 E-value=86 Score=30.84 Aligned_cols=75 Identities=25% Similarity=0.347 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh-HHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD-LFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d-~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
++-..+|.+..+++++. .+.++++++|..... -.++ .+.+...++.+.+-+..||.++..++.+.+.....|-.+
T Consensus 34 ~ld~~~r~~~~~~~~l~---~erN~~sk~i~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQ---AKRNELSKQIGKAKG-QKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34556677777777765 556777888866321 1233 455666666777777777777777777666555444433
No 191
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.86 E-value=1.9e+02 Score=31.03 Aligned_cols=102 Identities=19% Similarity=0.251 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 125 s~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.+-+..+-..+....+.-...+..+..+++.+..++.......+.-++.+ ..+..|+..+..++..-.++|..
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~Lns 444 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNS 444 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344444444455566666777777778888887777655555555544 44556677777777777777776
Q ss_pred hhhhhHHHhHHHHHHHHHhhcccCCChHH
Q 025130 205 LADKQDITNIGMYLLCNFVDGKKGRTTES 233 (257)
Q Consensus 205 ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~ 233 (257)
-..-=..--..+.-|+..|--.++..|..
T Consensus 445 AQDELvtfSEeLAqLYHHVC~cNgeTPnR 473 (717)
T PF09730_consen 445 AQDELVTFSEELAQLYHHVCMCNGETPNR 473 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCcc
Confidence 66655556667777777776666666764
No 192
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=59.85 E-value=76 Score=30.00 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 125 s~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
...++.++..=-.+++.|..=-..=..|-..+... =++.++-+.+++-+..+...++++...+.++..=...||.||.+
T Consensus 123 R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~-~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 123 RQLASEITQRGASLYDLLGKEVELREERQRALARP-LELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555544332222333333333 34667888888888888888888888888888888888999875
Q ss_pred hhhhhHHHhHHH
Q 025130 205 LADKQDITNIGM 216 (257)
Q Consensus 205 ie~kQd~tn~GV 216 (257)
-..-=+.+-.-+
T Consensus 202 kk~ELER~qKRL 213 (267)
T PF10234_consen 202 KKQELERNQKRL 213 (267)
T ss_pred HHHHHHHHHHHH
Confidence 444333333333
No 193
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=59.83 E-value=59 Score=30.48 Aligned_cols=63 Identities=14% Similarity=0.329 Sum_probs=31.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH-HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQ-NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~-~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
++|+++-.-|...-+.+.+||+.+..+..+. ..+.+++ +.+.+...++.++..++.++..+..
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l-~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQL-KQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3555555555555556666666555443322 2222222 2234444444566666666655554
No 194
>PHA00276 phage lambda Rz-like lysis protein
Probab=59.72 E-value=55 Score=28.51 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=26.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025130 157 NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 157 d~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
..++.++.+++...++|+..++....++..|+.+
T Consensus 48 ~~~QqaVaal~~~yqkEladaK~~~DrLiadlRs 81 (144)
T PHA00276 48 ADTQAAINAVSKEYQEDLAALEGSTDRVIADLRS 81 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 3347778888889999999999888887777764
No 195
>PLN02678 seryl-tRNA synthetase
Probab=59.68 E-value=45 Score=33.46 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
+..-+|.+..+++.+..+ .++++++|.. ...-.++.+.+...++.+.+-+..||.++..++.+-+
T Consensus 38 ld~~~r~l~~~~e~lr~e---rN~~sk~I~~-~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKE---FNKLNKEVAK-LKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777655 4566666654 1122233333334444444444444555554444433
No 196
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.68 E-value=31 Score=29.10 Aligned_cols=66 Identities=21% Similarity=0.384 Sum_probs=36.6
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHH
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLC 220 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 220 (257)
.++++.|..|+--.+.++-.|-+||..--.-+..+++|+++-.-...+==+|+..+... .|+..+|
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~ 100 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLC 100 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHH
Confidence 34455555555555666666666665555555666666555544444444444443332 6677777
No 197
>PRK10698 phage shock protein PspA; Provisional
Probab=59.63 E-value=1.4e+02 Score=27.04 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=27.1
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 025130 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
..+.+..++..+......+..++.-+..|+.||.+...+++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666777777777777666653
No 198
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=59.20 E-value=83 Score=32.76 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=23.6
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 178 CDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+.|+..|=.|...||.-++.|.+|++|=-
T Consensus 504 k~eI~KIl~DTr~lQkeiN~l~gkL~RtF 532 (594)
T PF05667_consen 504 KEEIEKILSDTRELQKEINSLTGKLDRTF 532 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56777788888888888888999988753
No 199
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=59.19 E-value=3.1 Score=34.67 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 025130 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
.+.+......+...+.-+..|...+..|..|+..++..++.
T Consensus 44 ~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 44 NQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333444444444455555555666666666666666655
No 200
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=59.16 E-value=1.2e+02 Score=31.40 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=64.1
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH----------H------HHHHHhhhhHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI----------R------KNVEEACDDLFK 183 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i----------~------~eV~~v~~d~~~ 183 (257)
++|..-.-++.+-+-++.+++.++. ......+|.++++.+|...+-.+.- + .++-+...|+|+
T Consensus 336 A~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~ 414 (533)
T COG1283 336 AAREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEH 414 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHH
Confidence 5666667777788888888999987 7777888888888888765433210 1 235566777888
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHh
Q 025130 184 VEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
||+=++.+ +.-.+.|+ +.+-.++-.|..-||++.
T Consensus 415 IgDiie~l---~~~~~kk~---~~~~~fse~~~~el~~l~ 448 (533)
T COG1283 415 IGDIIERL---LELADKKI---ANGRAFSEDGLEELDALF 448 (533)
T ss_pred HHHHHHHH---HHHHHHHH---hcCCCCCHHHHHHHHHHH
Confidence 88777663 33333333 345566667777666654
No 201
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.11 E-value=62 Score=36.58 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhH
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (257)
++.-...+....+|+++.|..+.+++++-..-...+.+.....+.++.+...++.++...-..++.+++.+..+=+-...
T Consensus 396 ~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~ 475 (1293)
T KOG0996|consen 396 LEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETE 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44445566677778888888888887777666666667777777777777777888877777777777777665555555
Q ss_pred HHH
Q 025130 215 GMY 217 (257)
Q Consensus 215 GV~ 217 (257)
|+.
T Consensus 476 ~~~ 478 (1293)
T KOG0996|consen 476 GIR 478 (1293)
T ss_pred hhH
Confidence 543
No 202
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=58.90 E-value=1.8e+02 Score=28.25 Aligned_cols=88 Identities=14% Similarity=0.273 Sum_probs=42.4
Q ss_pred hhHHHhHhhHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhHHh----HHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 025130 115 DLMYVTRKSMATAVSNLNKH---LESVTEALTVAKKHLTQRIQNLNDK----VEKQNEISKDIRKNVEEACDDLFKVEHN 187 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kq---LeqVs~sL~~tKkhLsqRI~~vd~k----ld~~~eis~~i~~eV~~v~~d~~~i~~d 187 (257)
+..-.|..|+..|=+.+.+. -+.+...|..+...|...-+.++.- +.+..+.-...+.+...+...+.....+
T Consensus 201 ~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~ 280 (384)
T PF03148_consen 201 SWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKN 280 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455677776665544332 2344444555555555544444432 3333333333444444555555555555
Q ss_pred HHHHHHHHHhhhhhh
Q 025130 188 LKDLQSMIYCLDGKI 202 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki 202 (257)
+..++..+..-++-|
T Consensus 281 i~~L~~ai~~k~~~l 295 (384)
T PF03148_consen 281 IEDLEKAIRDKEGPL 295 (384)
T ss_pred HHHHHHHHHHHHhhH
Confidence 555555554444443
No 203
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=58.83 E-value=40 Score=29.08 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
-+..++++-..+++.|+.+|.+-+ ...++++|-....|+.++-..+..+...+...+.
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~ 61 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAK--SNLGKESIRMALEDLADHYCKIGDLEEALKAYSR 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467888999999999999999765 6778888888888888888888888888777665
No 204
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=58.62 E-value=85 Score=24.42 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=29.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025130 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 131 v~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
+...|+.-++.|...-....+|++.+.....+-.++.+.++.++.-+...+..+
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~l 76 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSL 76 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566666666666666666665555554444444333
No 205
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=58.35 E-value=1.5e+02 Score=30.11 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
..+.++.|+.+++.+|..+..|+..++..|..|...|...-.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~ 323 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKE 323 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777777765443
No 206
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=58.04 E-value=58 Score=31.06 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=36.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 025130 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (257)
.++..+...|+++-......=.++++||++-..+|+...+=+...+.+|..+++
T Consensus 18 Eti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456667777777777777777778888777777777655555555555555443
No 207
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.97 E-value=89 Score=31.59 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=27.1
Q ss_pred hhHHHhHhhH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025130 115 DLMYVTRKSM----ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 115 DlMfVTkr~m----s~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd 157 (257)
|......+.| .+....+...|++++..|.++...|....+.++
T Consensus 251 ~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~ 297 (563)
T TIGR00634 251 EGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELE 297 (563)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444444 345667777777777777777777777655554
No 208
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.94 E-value=1.1e+02 Score=28.60 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=59.3
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHh
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
++..++|.++.+|-...-|...+.++..++..|..+.+-=+..+-.+=.+|+..|..+...-+-+..|+..|-+..
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999999998888888877776666666666667777777777777777777777776655
No 209
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.77 E-value=80 Score=31.91 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEIS 167 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLs---qRI~~vd~kld~~~eis 167 (257)
..+.+.+.++--+|+.+...|+.-...+. .|++.+..++.....+.
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~Lk 317 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLK 317 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777766555543 45555555555444433
No 210
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.64 E-value=35 Score=27.21 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=12.8
Q ss_pred HHHhHhhHHHHHHHHHHhhHHH
Q 025130 117 MYVTRKSMATAVSNLNKHLESV 138 (257)
Q Consensus 117 MfVTkr~ms~Av~sv~kqLeqV 138 (257)
|||- ++..+|...+.+.++..
T Consensus 59 vlv~-~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 59 LLVK-TDKEEAIQELKEKKETL 79 (110)
T ss_pred hhhe-ecHHHHHHHHHHHHHHH
Confidence 6664 55666666666655554
No 211
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=57.55 E-value=66 Score=31.70 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHh
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
+...+|.+..+++++..+ .++++++|.... .-.++.+.+..+++.+.+-+..||.++..++.+-+...
T Consensus 33 ld~~~r~l~~~~~~lr~~---rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 33 LDEERRELQTELEELQAE---RNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888777665 456677765411 11124444555555666666666666666665544433
No 212
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=57.49 E-value=1.4e+02 Score=26.57 Aligned_cols=69 Identities=10% Similarity=0.185 Sum_probs=52.6
Q ss_pred eeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 025130 108 WKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN 187 (257)
Q Consensus 108 WKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d 187 (257)
+.+||.+. ..|.++...+|..+|..+.++..+-.. .++.-+-|.+....+..++.=+. ++|+.+...+
T Consensus 58 f~~ls~~E------~~l~~~le~~g~~~d~~~~~~~~~~~~----~~~f~e~LkEy~~ya~slk~vlk--~r~~~q~~~e 125 (201)
T cd07622 58 FSEWSAIE------KEMGDGLQKAGHYMDSYAASIDNGLED----EELIADQLKEYLFFADSLRAVCK--KHELLQYDLE 125 (201)
T ss_pred HHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 56888888 799999999999999999988886544 36677778888888888877443 6666665554
Q ss_pred H
Q 025130 188 L 188 (257)
Q Consensus 188 v 188 (257)
.
T Consensus 126 ~ 126 (201)
T cd07622 126 K 126 (201)
T ss_pred H
Confidence 4
No 213
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.43 E-value=2.3e+02 Score=29.85 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=49.6
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHhhHHh--------------HHHHHHHHHHHHH
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVA------KKHLTQRIQNLNDK--------------VEKQNEISKDIRK 172 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~t------KkhLsqRI~~vd~k--------------ld~~~eis~~i~~ 172 (257)
++++|==+++.+.+-.+++.++++......++. ++...+|++-+..+ +.++.--.+..-.
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK 294 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH
Confidence 566666677777777776666665544333222 22222233322222 1122222222233
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHH
Q 025130 173 NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYL 218 (257)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (257)
.+..++..++.-..+++.|+..+..|-.+|+ +|+++-.-|..
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie----~Q~iS~~dve~ 336 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIE----LQGISGEDVER 336 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCHHHHHH
Confidence 4455555555555555556555555555555 55555544443
No 214
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.35 E-value=48 Score=30.69 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
..+=.-|.+.|.++.+|...|...+.++.......+.||..++.|=.+.=+-+..+
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678899999999999999999998888888888888877655544444444
No 215
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.34 E-value=1.3e+02 Score=28.60 Aligned_cols=86 Identities=14% Similarity=0.212 Sum_probs=51.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 131 v~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
-+.+++.....+...-+++.++-+.+++-+++....+..+.+-+.+.+..+...=.++..+..+...-...+.++-....
T Consensus 216 ~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~ll~~~p 295 (359)
T COG1463 216 ASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQLLHGLP 295 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 34455555555566666666777777777777777777777777777766655555555555555555555555444444
Q ss_pred HHhHHH
Q 025130 211 ITNIGM 216 (257)
Q Consensus 211 ~tn~GV 216 (257)
......
T Consensus 296 ~~~~~~ 301 (359)
T COG1463 296 TYAANL 301 (359)
T ss_pred hhhhhh
Confidence 444444
No 216
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=57.32 E-value=18 Score=34.96 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=23.5
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
+.+.++.+.+..+...++.....+..|+.+++.+|..-...|
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 334444444455555556666666666666666666544444
No 217
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=57.29 E-value=51 Score=26.22 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=36.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
.+.|..+||++. .+-.||.+|-|+|-.+|.+.-+-.++|+.+..+-.
T Consensus 28 ~~~ins~LD~Ln----s~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 28 YAAINSMLDQLN----SCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777655 45578999999999999999999999888875443
No 218
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.28 E-value=64 Score=30.50 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=18.4
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 176 EACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
++...++....+++.++.-+..||...++++.+-+.-..-++.|
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 33333333334444444444444444444444444444344444
No 219
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=56.88 E-value=94 Score=25.80 Aligned_cols=20 Identities=5% Similarity=0.147 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHHHh-hhhc
Q 025130 54 FTDAIKDQLNRLKFEC-QRAS 73 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El-~Las 73 (257)
.-+.+..+++.+...+ .|..
T Consensus 27 ~f~~~~~~~~~~~~~~~~l~~ 47 (229)
T PF03114_consen 27 EFEELEEKFKQLEESIKKLQK 47 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666 5544
No 220
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.83 E-value=88 Score=33.11 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH---hhhhHHHHHHHHHhhhhh
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK---VEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~---i~~dv~~v~~~V~~Le~K 201 (257)
+.+..-..+..+-+.|...+.+|+..+++++......++++..++..+.. ++.++...+..+..|+.+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~ 489 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKE 489 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34444555666666777777777777777777766666666665544432 334444444444444333
No 221
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=56.83 E-value=1.1e+02 Score=31.78 Aligned_cols=111 Identities=11% Similarity=0.215 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
.-|...|.+-...|.++..--...|.-|...+..+..+.+....=++.-.+++..++..+..+-.+++.=.+....|...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888889999999999999999999999999988877766666677888888888888888888888888888888
Q ss_pred hhhhhhhhHHH--hHHHHHHHHHhhcccCCChH
Q 025130 202 IDSLADKQDIT--NIGMYLLCNFVDGKKGRTTE 232 (257)
Q Consensus 202 i~~ie~kQd~t--n~GV~~Lc~f~~~~~~~~~~ 232 (257)
+.++...-++. ...|.-++..+.-.+..+.+
T Consensus 477 ~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~K 509 (594)
T PF05667_consen 477 LEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEK 509 (594)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88776653332 23455555555544433433
No 222
>PHA03395 p10 fibrous body protein; Provisional
Probab=56.81 E-value=40 Score=27.06 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=5.1
Q ss_pred HHhhHHhHHH
Q 025130 153 IQNLNDKVEK 162 (257)
Q Consensus 153 I~~vd~kld~ 162 (257)
|..||+|+|.
T Consensus 13 Ikavd~KVda 22 (87)
T PHA03395 13 IKAVSDKVDA 22 (87)
T ss_pred HHHHhhHHHH
Confidence 4555555553
No 223
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.34 E-value=1.5e+02 Score=30.45 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 025130 140 EALTVAKKHLTQRIQNLND 158 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~ 158 (257)
+-|+..|..+..+|..++.
T Consensus 347 sqlen~k~~~e~~~~e~~~ 365 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADS 365 (493)
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 4555556666666666555
No 224
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=56.32 E-value=29 Score=28.37 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
|+.|-.+|+.+..++.+..+=...++++|.++-+.=.++.-+-+.++..+..++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888999999998888888888999988888888888899999999988876
No 225
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=56.27 E-value=1.5e+02 Score=29.59 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=18.0
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
+.++..-+..++..+..++.....|+.++..++.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLS 162 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555444433
No 226
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=56.26 E-value=69 Score=29.03 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhHHhHHH-------HHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 146 KKHLTQRIQNLNDKVEK-------QNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~-------~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
--.|.-|||+++..+|+ |.|-.-.++.+|+.++.|+.....-++.+
T Consensus 81 vinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777666 33344466677777776666666555544
No 227
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=55.90 E-value=89 Score=23.79 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld 161 (257)
+.++...+.....++.+....+|.++....+.+-.-|+
T Consensus 19 ~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~ 56 (127)
T smart00502 19 LEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALN 56 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 228
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=55.65 E-value=2.4e+02 Score=29.46 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHH
Q 025130 168 KDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 168 ~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
...+.+...+++.+.....-++.-++-+..|..-+..+-..+|.|..=.
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL 327 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAEL 327 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777888888888888888888888887775543
No 229
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=55.62 E-value=50 Score=25.09 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 025130 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (257)
.+..+|..+++.++..++.+..-.+.+.+++.+++.
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 230
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=55.48 E-value=94 Score=27.46 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=38.2
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH-HHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEI-SKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~ei-s~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
-|+.++++-+++- .|+.-+.-|-..=..+++.+.-+-.+..++-++ .+.+.++|.+++.-++....|+..+
T Consensus 70 ~kk~~~~~~eele-rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 70 QKKQLQDIKEELE-RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred hhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 3444455544442 244444444444444555555555555555555 5666666666666666666665544
No 231
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.43 E-value=2.3e+02 Score=31.89 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=17.6
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 181 LFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
++.+..+++.+..-+..|..+|+..+.....-..-+.|+
T Consensus 986 ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444
No 232
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.43 E-value=3e+02 Score=29.70 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
..+...|..+.++++-+-....+..+...++...+.+++-+...+...-..-..+++..+-....++..+|.-+..++..
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999998888888888888888888888888888888888888888
Q ss_pred hhhhhhhhHHHhHHHHHH
Q 025130 202 IDSLADKQDITNIGMYLL 219 (257)
Q Consensus 202 i~~ie~kQd~tn~GV~~L 219 (257)
+++....=+-.+.-+..+
T Consensus 195 ~~~~~~ql~~~~q~~~~~ 212 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQEL 212 (716)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777665444444444433
No 233
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=55.12 E-value=30 Score=29.81 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=28.3
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHhhHHhHH
Q 025130 118 YVTRKSMATAVSNLNKHLESVTEALTVA---KKHLTQRIQNLNDKVE 161 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVs~sL~~t---KkhLsqRI~~vd~kld 161 (257)
|.-.++..+|.+.+-|..+.+..++... -.+|++|++.+...+.
T Consensus 86 ~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 86 YYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999988877665543 2344455554444433
No 234
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.98 E-value=35 Score=34.74 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 160 VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 160 ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
|.++++-++++++++..++.+++.+....+..++.++.||..+.+++..+
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555554444444444445555555555555555544
No 235
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=54.82 E-value=5.2 Score=34.48 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=20.9
Q ss_pred CCCCCcceeehhhhhHhhhhhe-eeeeee
Q 025130 82 ENSGGNATSLMIPAATLGALGY-GYMWWK 109 (257)
Q Consensus 82 ~~sGg~~s~~ivpaA~vGavGY-gYmwWK 109 (257)
+|++.++.+.++|..++|++-| .|.-.|
T Consensus 75 ~g~~~g~~~~imPlYtiGI~~f~lY~l~K 103 (152)
T PF15361_consen 75 GGSGKGLMGQIMPLYTIGIVLFILYTLFK 103 (152)
T ss_pred CCCCCchhhhHhHHHHHHHHHHHHHHHHH
Confidence 4444567789999999999998 455544
No 236
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=54.79 E-value=2.7e+02 Score=29.04 Aligned_cols=45 Identities=9% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
...||..+..++...+.-.+.+.+|+..++...++|..+++.++.
T Consensus 146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 146 YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 346677777777777777777888888888888888888877764
No 237
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=54.78 E-value=1.2e+02 Score=25.07 Aligned_cols=51 Identities=14% Similarity=0.311 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH----hhhhHHHHHHHH
Q 025130 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK----VEHNLKDLQSMI 195 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~----i~~dv~~v~~~V 195 (257)
.--|+|......+-++-++-..+.....+.+.++ +|+++ |..|+..|-..+
T Consensus 54 ~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEi-GDveNWa~~iE~Dl~~i~~~L 108 (121)
T PF06320_consen 54 KEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEI-GDVENWAEMIERDLRVIEETL 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555555555566666555555 45433 555555554333
No 238
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.77 E-value=59 Score=29.97 Aligned_cols=58 Identities=10% Similarity=0.213 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+||+..++-...--+|.++|+.+...+++..-..+...-++..+++.-.++--|++..
T Consensus 44 ~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 44 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444556666666666665555555555555555555555555555543
No 239
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=54.65 E-value=1.5e+02 Score=28.49 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH---HhhhhHHHHHHHHHhhhhhhh
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF---KVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~---~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|-.--.++.+-|+.+..+|..+-.+-++..+-.....+++.+++.+.. .-+.++.++...++-||-+.-
T Consensus 53 ~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 53 LREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHH
Confidence 333445566667777777777777777777777777777777777666 456677777555555554443
No 240
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=54.59 E-value=1e+02 Score=28.14 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=45.1
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH-HHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD-IRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~-i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
|-|-.+||.|+++...+++.|..+++.=.. -|+.-+..|.+..+....+-.. -.+|...+.+-+...-.++++++.
T Consensus 48 ~~lv~~rkela~~~~~fs~al~~L~~~E~t---~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~ 124 (219)
T cd07621 48 DKMTRKHKDVADSYIKISAALTQLATSEPT---PLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKD 124 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 556678999999999999999988876331 3333333333333333222222 234555566666666666666654
Q ss_pred H
Q 025130 194 M 194 (257)
Q Consensus 194 ~ 194 (257)
+
T Consensus 125 ~ 125 (219)
T cd07621 125 L 125 (219)
T ss_pred H
Confidence 4
No 241
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=54.39 E-value=19 Score=29.42 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD 169 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~ 169 (257)
++.+++..+..-|.++.+.+.+++..+..+.+.+..++++..++...
T Consensus 66 g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~ 112 (133)
T PF06148_consen 66 GMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREE 112 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888889999999999888888888888888877655443
No 242
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=54.38 E-value=1.2e+02 Score=24.62 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=11.7
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 025130 126 TAVSNLNKHLESVTEALTVA 145 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~t 145 (257)
+-|.+|..+|..+...+..-
T Consensus 6 ~~v~~I~~~i~~i~~~v~~l 25 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEEL 25 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666555433
No 243
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=54.33 E-value=2.3e+02 Score=28.01 Aligned_cols=66 Identities=8% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.++....+.|...|..+....++....+..+.+...++....++....++.+...++.+...+.++
T Consensus 252 ~s~n~m~~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~ 317 (553)
T PRK15048 252 QSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQN 317 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443344444444444444444444444444444433
No 244
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=54.30 E-value=1e+02 Score=31.81 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=56.0
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
+.|..+-..-..++.++.+.++.|..-++.+...|...-+++....+=...+-+++..+ ...|.+...+.+-=..|
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~L 206 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQL 206 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHH
Confidence 67888888888999999999999999999888888776666555444444444555444 44555555555554555
Q ss_pred hhhhhhh
Q 025130 199 DGKIDSL 205 (257)
Q Consensus 199 e~Ki~~i 205 (257)
..+|..+
T Consensus 207 v~eLs~~ 213 (552)
T COG1256 207 VDELSQL 213 (552)
T ss_pred HHHHHhh
Confidence 5555443
No 245
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=54.29 E-value=1.6e+02 Score=31.62 Aligned_cols=40 Identities=5% Similarity=0.080 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHh
Q 025130 184 VEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
-..++..+.+.+..+.+++.++.....-.-.+...|-+|.
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (910)
T TIGR00833 605 ALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYS 644 (910)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555566555554444444444444433
No 246
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.02 E-value=1.7e+02 Score=29.78 Aligned_cols=107 Identities=19% Similarity=0.323 Sum_probs=66.5
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhhHHh--HH-HHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 025130 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAK---KHLTQRIQNLNDK--VE-KQNEISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tK---khLsqRI~~vd~k--ld-~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (257)
|-||-+=..=-+|-..|.++++.+.+.|..++ ++|...+++|..+ |+ .-.+..+.+.+++..+......+...+
T Consensus 288 d~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i 367 (560)
T PF06160_consen 288 DQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERI 367 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444445666777777777777776665 4677778877655 11 122333444444444444444443333
Q ss_pred -------HHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 189 -------KDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 189 -------~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
-.+...+..+...++.|+..|.--+..+..|+.
T Consensus 368 ~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 368 EEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777888888888888888888888876
No 247
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.98 E-value=1.9e+02 Score=26.96 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqR 152 (257)
..|++..+.++..+++.+.+|...+++++++
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6899999999999999999999999988663
No 248
>TIGR02550 flagell_flgL flagellar hook-associated protein 3. This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; members of the family vary between 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC.
Probab=53.91 E-value=1.7e+02 Score=26.50 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHh-hhhcC
Q 025130 54 FTDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El-~Lass 74 (257)
+-.+++.+++.|.++| .++..
T Consensus 105 ~~~~ia~e~~~l~~~i~~~~Nt 126 (306)
T TIGR02550 105 DRKAIAKEIKQLLDQLVNLANT 126 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 4468999999999999 87763
No 249
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.95 E-value=1.1e+02 Score=24.02 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
++.|..|+.+..+.+...+=||.+++++=..+..++++.++.-+.|+..=..+...|.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777777777777777666777777777777777666555544433
No 250
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.95 E-value=62 Score=30.75 Aligned_cols=104 Identities=19% Similarity=0.294 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
-+.++++.....|+...+.|+..+.+|. .+|+.+..+.++...=...+++++...+ .-++.-..++.+|.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~-------~kl~rA~~Li~~L~ 290 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE-------RKLERAEKLISGLS 290 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhccHHHHHhhhc
Confidence 3566777777777777777766665433 3444444444444333344444444444 44444555555555
Q ss_pred h-------hhhhhhhhhHHHhHHHHHHHHHhhcccCCChHHH
Q 025130 200 G-------KIDSLADKQDITNIGMYLLCNFVDGKKGRTTESM 234 (257)
Q Consensus 200 ~-------Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~~ 234 (257)
+ .+..++.. --+.-|=-.||.++----|..|..|
T Consensus 291 ~E~~RW~~~~~~l~~~-~~~l~GD~llaaa~isY~G~f~~~~ 331 (344)
T PF12777_consen 291 GEKERWSEQIEELEEQ-LKNLVGDSLLAAAFISYLGPFTPEY 331 (344)
T ss_dssp HHHHCCHCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCTSHHH
T ss_pred chhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHHcCCCCHHH
Confidence 4 34444333 3334555555553333334554443
No 251
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=52.86 E-value=1.1e+02 Score=27.79 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=21.6
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 176 EACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
....++..|.+||+.|.+-|.+||.=+.
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888887664
No 252
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=52.68 E-value=1.9e+02 Score=27.34 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHh----HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 139 TEALTVAKKHLTQRIQNLNDK----VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 139 s~sL~~tKkhLsqRI~~vd~k----ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
-++|+....++.+.|+.+..+ +-+.++....+.+++..+...++++..++.++.........+...+..+
T Consensus 16 p~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~ 89 (338)
T PF04124_consen 16 PQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEE 89 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544 3344566666666676667777777777766666666666655554444
No 253
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.53 E-value=2.1e+02 Score=27.05 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=36.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 132 ~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
.++|++.-+.|.+.+.....++..|...+++.+.-...+++||.-++
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888877777777776554
No 254
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=52.38 E-value=1.6e+02 Score=28.72 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=29.1
Q ss_pred ccccceeeccCCCc---chHH-----HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHh-hhh
Q 025130 18 LGYTGTILVKDGKL---PELL-----RELQSLVERLSKSGEQDNFTDAIKDQLNRLKFEC-QRA 72 (257)
Q Consensus 18 AG~~GSvl~k~GkL---sd~~-----g~lq~~lk~~~k~gd~~~~~d~L~aQV~~L~~El-~La 72 (257)
+|++..|.+++|.. .|++ ..++.-+..++. ....+.+++.||.-|+ .+.
T Consensus 67 ~G~v~~i~V~eG~~V~~G~~L~~ld~~~~~~~~~~~~~------~~~~~~~~~~rL~a~~~~~~ 124 (457)
T TIGR01000 67 NNAIKENYLKENKFVKKGDLLVVYDNGNEENQKQLLEQ------QLDNLKDQKKSLDTLKQSIE 124 (457)
T ss_pred CcEEEEEEcCCCCEecCCCEEEEECchHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 47788888888863 3332 333333333332 2566777888887777 443
No 255
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=52.26 E-value=4.7 Score=33.58 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHH
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
.++++.+..++++..+-...+..+|.+...+++.+...++.+...|..|+..+.++..++..-..-.
T Consensus 16 ~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~ 82 (138)
T PF06009_consen 16 LDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLS 82 (138)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666777777777778888888888888888888888888888888888888776544433
No 256
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=52.24 E-value=1.1e+02 Score=23.81 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHH
Q 025130 187 NLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLC 220 (257)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 220 (257)
|.+.+..-+..|-.+|..+|....-...-+..++
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444444444443
No 257
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=52.23 E-value=22 Score=30.57 Aligned_cols=110 Identities=8% Similarity=-0.039 Sum_probs=57.3
Q ss_pred eeeccCcchhHHHhHhh---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025130 107 WWKGLSFADLMYVTRKS---MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 107 wWKGws~sDlMfVTkr~---ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
-||--|+++|--+|--. +.+..---.++|+.+-..|..-|..|..+|...-..+. ++..... |...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~~~~~~~~----------~~~~~~~-D~~D 74 (151)
T PRK10778 6 NRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVDRTVTHMQ----------DEAANFP-DPVD 74 (151)
T ss_pred hcccccchhccccccccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cccccCC-CHHH
Confidence 38888888888887766 33333333467777777777777766666553322221 1110111 1111
Q ss_pred hhhh---HHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhccc
Q 025130 184 VEHN---LKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKK 227 (257)
Q Consensus 184 i~~d---v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~ 227 (257)
...+ ..-...+...-...|..|+.....-..|-|-.|.-++..+
T Consensus 75 ~a~~~~~~~~~l~~~~r~~~~L~~I~~AL~Ri~~gtYG~Ce~CGe~I 121 (151)
T PRK10778 75 RAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEI 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeccCCCcc
Confidence 1111 0001112222234455556655566679999999887554
No 258
>PRK01919 tatB sec-independent translocase; Provisional
Probab=52.16 E-value=1.7e+02 Score=26.06 Aligned_cols=51 Identities=6% Similarity=0.216 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
+.|-.+..++++-+..+-..+...|.++..-++ +||..++.+..++...++
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~e-----~dElrk~~~~~e~~~~~v 73 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREIE-----LDELRKMKTDFESAARDV 73 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888776652 344444444444333333
No 259
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=52.02 E-value=89 Score=27.13 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=9.6
Q ss_pred HHhHHHHHHHHHhh
Q 025130 211 ITNIGMYLLCNFVD 224 (257)
Q Consensus 211 ~tn~GV~~Lc~f~~ 224 (257)
....|+.++++.+.
T Consensus 106 ~~~ega~hf~nAl~ 119 (148)
T TIGR00985 106 NVDEGAVHFYNALK 119 (148)
T ss_pred chHHHHHHHHHHHH
Confidence 44567888877764
No 260
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=51.94 E-value=85 Score=22.38 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 159 KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 159 kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
-+++..++..+|.+++..=++-+..+...+..+
T Consensus 16 ~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i 48 (66)
T PF12352_consen 16 MADETEEIGAATLEDLRSQREQLKRVRDKLDDI 48 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333333333
No 261
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=51.61 E-value=1e+02 Score=23.31 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHH
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~ 163 (257)
.+......+.++|..+...+.+.
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~ 31 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLREL 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555554444444
No 262
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=51.35 E-value=1.3e+02 Score=24.46 Aligned_cols=65 Identities=8% Similarity=0.053 Sum_probs=50.0
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhh-------hHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHh
Q 025130 151 QRIQNLNDKVEKQNEISKDIRKNVEEACD-------DLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~-------d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
++++.+|+++-.+...+...-++++.-+. .-+.|..-...+...+...+..|. .=|+|||++.
T Consensus 6 ~~L~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr----------~qI~~L~e~~ 75 (117)
T PF10280_consen 6 QQLNEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELR----------RQIKYLEEVS 75 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhc
Confidence 45777888888888888888888887776 567777777788777777777776 3489999987
Q ss_pred hc
Q 025130 224 DG 225 (257)
Q Consensus 224 ~~ 225 (257)
.+
T Consensus 76 ~~ 77 (117)
T PF10280_consen 76 II 77 (117)
T ss_dssp TT
T ss_pred cc
Confidence 65
No 263
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=51.27 E-value=87 Score=30.01 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
.=|.-|...||.|-++|+++.|.-.+.+.+..+-..+++.....++.++.-+..|-..|. +-.+-+..+|+-..-+
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~--~rdeli~khGlVlv~~ 180 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK--QRDELIEKHGLVLVPD 180 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCeeeCCC
Confidence 347778889999999999999999999998888777777777777777666666666664 2233445555554443
No 264
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=51.22 E-value=13 Score=28.71 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=31.6
Q ss_pred HHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025130 117 MYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 117 MfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~ 162 (257)
=|.||+..+. .++.+-++--+.|...=++|.+||+.|.+=||+
T Consensus 25 HY~~k~~~~~---~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 25 HYRSKRKTAA---SLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4778877664 356666666677777778899999998877764
No 265
>PRK15396 murein lipoprotein; Provisional
Probab=51.12 E-value=75 Score=24.84 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=18.0
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
|+..++.|..|.|+...-....+.++..++++-.+-
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ra 65 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666655554445555554444444333
No 266
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=50.98 E-value=78 Score=33.51 Aligned_cols=55 Identities=11% Similarity=0.226 Sum_probs=48.9
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.++.+..+-.+++.|+.+-.++.+=+++-+.|++.|..|++.++..-..+.-++.
T Consensus 73 es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~ 127 (683)
T KOG1961|consen 73 ESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLE 127 (683)
T ss_pred hhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHH
Confidence 4567888889999999999999999999999999999999999988877776655
No 267
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=50.92 E-value=2.3e+02 Score=26.98 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=5.3
Q ss_pred HhhHHHHH
Q 025130 121 RKSMATAV 128 (257)
Q Consensus 121 kr~ms~Av 128 (257)
|+.+.||.
T Consensus 109 rkEl~nAl 116 (290)
T COG4026 109 RKELKNAL 116 (290)
T ss_pred HHHHHHHH
Confidence 66677765
No 268
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=50.89 E-value=2.1e+02 Score=26.71 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=35.1
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHhhHHhHHH
Q 025130 115 DLMYVTRKSMATAVSNLNKHLESVTEALTV-AKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVs~sL~~-tKkhLsqRI~~vd~kld~ 162 (257)
.+++..=.+..+.+..+.++++++.+.+-. .+++.-.||-.+.+.+=.
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~ 191 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVY 191 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 466677788999999999999999976655 444466677766666433
No 269
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.67 E-value=1.4e+02 Score=29.67 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHhhHH------------------hHHHHHHHHHHHHHHHHHhhhhHH
Q 025130 124 MATAVSNLNKHLESVTEALTVA---KKHLTQRIQNLND------------------KVEKQNEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~t---KkhLsqRI~~vd~------------------kld~~~eis~~i~~eV~~v~~d~~ 182 (257)
-+.++..+-++|+++...++++ +..+.+++.-++. .+.+..++...+.++..+++....
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666555544433 2344444433333 244556666667777777777777
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 183 KVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.....+..+++.+..|+.++..+..
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7777777777777777776666554
No 270
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=50.62 E-value=2.5e+02 Score=30.30 Aligned_cols=118 Identities=8% Similarity=0.030 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHh-hhhcCCCeEEEeCCCCCcceeehhhhhHhhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHH
Q 025130 54 FTDAIKDQLNRLKFEC-QRASSGQIFVRNENSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLN 132 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El-~Lassr~iTVvn~~sGg~~s~~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~ 132 (257)
-+..+.++++.|++.+ ++.++ ++ .+..+.-|. - .|.-|-.+-..|=+|.+=|..-+-...+.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (910)
T TIGR00833 520 NLGQVSLAVRLMQQAISKLQGS-----AG-----DVFDIFDPL--R-----RFVAAIPECRANPVCSVAREIVQAADTVV 582 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHH--H-----HHhccCCCcccChHHHHHHHHHHHHHHHH
Confidence 3556666777777776 65444 11 111122221 1 12345666677777777665554445555
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
.++.++.+.+....+ ...-++..-..|....+-.+++++.+.+++..++++..-+.
T Consensus 583 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (910)
T TIGR00833 583 SSAAKLADAAGQLAR-GIADVASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLN 638 (910)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554443322 11112333333444444455555555555555555543333
No 271
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=50.58 E-value=1e+02 Score=26.90 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=20.1
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
++|..|=|.|...|....++...-.+=++.+.-=++-+.+|+..|
T Consensus 101 ~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v 145 (159)
T PF05384_consen 101 KQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQV 145 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444444455554444444444444433433333334444444444
No 272
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=50.42 E-value=64 Score=29.80 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
|-.+|.++|+.|...+..|..++..|.+.|-+++
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQ 38 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQ 38 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999987776
No 273
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=50.36 E-value=1.8e+02 Score=25.54 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=23.3
Q ss_pred hHHHhHhhHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHh
Q 025130 116 LMYVTRKSMATAVSNLNKHLESVTEAL-TVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 116 lMfVTkr~ms~Av~sv~kqLeqVs~sL-~~tKkhLsqRI~~vd~k 159 (257)
++..--.+..+.+..+.++++++.+.+ ...++..-++|-.+...
T Consensus 115 il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~ 159 (292)
T PF01544_consen 115 ILDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRE 159 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 334445566666777777777777666 33333333333333333
No 274
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=50.16 E-value=3.4e+02 Score=28.75 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=43.4
Q ss_pred hhHHHhHhhHHH----HHHHHHHhh---HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025130 115 DLMYVTRKSMAT----AVSNLNKHL---ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 115 DlMfVTkr~ms~----Av~sv~kqL---eqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
|+|+---..|+. +-.++++-. +...+.+...-.+|.|.+|.-|.+++++..+...++.++-.=
T Consensus 385 ~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~q 454 (607)
T KOG0240|consen 385 DFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQ 454 (607)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566555555553 333344333 577888888889999999999999888888777777665443
No 275
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.67 E-value=1.5e+02 Score=24.72 Aligned_cols=97 Identities=10% Similarity=0.170 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH---HhhhhHHHhhhhHHHHH------
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE---EACDDLFKVEHNLKDLQ------ 192 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~---~v~~d~~~i~~dv~~v~------ 192 (257)
..|++++..+++..+.+++.....-++. ...+.+-|++.......+++-+. .+..++.....++...+
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 60 GELGEALSKLGKAAEELSSLSEAQANQE---LVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888888776654444 33444555555555554443221 22333333333333333
Q ss_pred --------HHHHhhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 193 --------SMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 193 --------~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
..|..|+.+|...+.....+..-....|.
T Consensus 137 ~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~ 173 (218)
T cd07596 137 KAAPGIKPAKVEELEEELEEAESALEEARKRYEEISE 173 (218)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444455555555555555544444443
No 276
>PRK12805 flagellin; Provisional
Probab=49.62 E-value=2.2e+02 Score=26.38 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHHHh-hhhcC---CCeEEEeC
Q 025130 53 NFTDAIKDQLNRLKFEC-QRASS---GQIFVRNE 82 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~Lass---r~iTVvn~ 82 (257)
.+-.+++.+++.|.++| .++.+ ...-++.|
T Consensus 105 ~dr~ai~~Ei~~l~~~i~~~an~~~~nG~ylf~G 138 (287)
T PRK12805 105 EDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQ 138 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeeecCC
Confidence 45678999999999999 88874 35555654
No 277
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.42 E-value=1.6e+02 Score=24.82 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=47.1
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
..|++++..++|+...|-..==+.|-|=.+.|+.+.+--++++..-+..+.+=..+..|.=--|.....+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~i 97 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRII 97 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777766666667777777888777777777777777766555555544444444433
No 278
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=48.78 E-value=1.8e+02 Score=27.21 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHH-HHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQN-EISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~kld~~~-eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
-.+...+-..|+.|...-+-+...+.... .+.+.+++...++.+++.+..+.++..+++++.|-+-..++-
T Consensus 183 ~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~i 254 (322)
T COG0598 183 GELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLI 254 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555444444443333333 455556666666666666666666666666665544444433
No 279
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=48.74 E-value=79 Score=33.44 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=27.9
Q ss_pred cCcchhHHHhHh--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 025130 111 LSFADLMYVTRK--SMATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (257)
Q Consensus 111 ws~sDlMfVTkr--~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~ 155 (257)
|.++|.-|...+ +.-+|+..+..+++|+.+-+..+|.-|.+=.++
T Consensus 12 i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~ 58 (683)
T PF08580_consen 12 ILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREG 58 (683)
T ss_pred cccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555554 223445555568888888888888877665444
No 280
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=48.74 E-value=1.2e+02 Score=23.21 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
++|++..+.++..+..||+.+|.+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEar 72 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEAR 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888765
No 281
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=48.66 E-value=1.4e+02 Score=27.03 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=14.9
Q ss_pred cccCCChHH----HHHHhhhcccccc
Q 025130 225 GKKGRTTES----MQEQLKLGEKARR 246 (257)
Q Consensus 225 ~~~~~~~~~----~q~~~k~~~~~~~ 246 (257)
+++.++|-. -|+.+++-||+..
T Consensus 109 QKnnKlPlrr~pKeqqelrl~gktd~ 134 (205)
T PF15079_consen 109 QKNNKLPLRRGPKEQQELRLMGKTDT 134 (205)
T ss_pred cccccCccccCchHHHHHHHhcccCC
Confidence 455666543 4778999999854
No 282
>PHA03395 p10 fibrous body protein; Provisional
Probab=48.58 E-value=80 Score=25.40 Aligned_cols=21 Identities=5% Similarity=0.286 Sum_probs=11.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 025130 126 TAVSNLNKHLESVTEALTVAK 146 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tK 146 (257)
++++.+...++.+..++...+
T Consensus 11 ~dIkavd~KVdalQ~~V~~l~ 31 (87)
T PHA03395 11 QDIKAVSDKVDALQAAVDDVR 31 (87)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 455555555555555554444
No 283
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=48.39 E-value=90 Score=23.22 Aligned_cols=46 Identities=15% Similarity=0.367 Sum_probs=25.3
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
..|.-||...++.+++.+++.-.=+.++..++..+..+..-+.++.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666666666666666665555555555443
No 284
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=48.36 E-value=1.5e+02 Score=30.73 Aligned_cols=88 Identities=13% Similarity=0.195 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHH----HHHHH
Q 025130 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIG----MYLLC 220 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G----V~~Lc 220 (257)
.|.|.++||+.|-.++....-=......|...++.-++.-..+-+.+..-+..+.++|.++++-=..|-.+ +..|+
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MS 493 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 67777777777777766555444444445444444444333333333333334444444443322222222 44455
Q ss_pred HHhhcccCCChH
Q 025130 221 NFVDGKKGRTTE 232 (257)
Q Consensus 221 ~f~~~~~~~~~~ 232 (257)
+.+..-+.++.+
T Consensus 494 EHLasmNeqL~~ 505 (518)
T PF10212_consen 494 EHLASMNEQLAK 505 (518)
T ss_pred HHHHHHHHHHHH
Confidence 555444444433
No 285
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=48.25 E-value=2e+02 Score=30.85 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
.+++-...+.+.+...+.++...|++. .++.+.+--++++....-.+|+..+.+.+..++...+-...++.=...|-
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~ 614 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLK 614 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666542 34444444445555444445555554444444444444444433333334
Q ss_pred hhhh
Q 025130 200 GKID 203 (257)
Q Consensus 200 ~Ki~ 203 (257)
.|+.
T Consensus 615 ~kle 618 (698)
T KOG0978|consen 615 RKLE 618 (698)
T ss_pred HHHH
Confidence 4433
No 286
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.99 E-value=1.8e+02 Score=25.88 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=43.0
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH-HHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS-KDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis-~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
|-|--+|+.|++++..+++.|..++..=..+-+-|+.=+..+.+-.+...++. .+-.++...+.+.+...-.++++++.
T Consensus 28 ~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~ 107 (198)
T cd07630 28 LKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKD 107 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999987765432221122222222222222222111 12235555666666666666666655
Q ss_pred HH
Q 025130 194 MI 195 (257)
Q Consensus 194 ~V 195 (257)
+.
T Consensus 108 ~l 109 (198)
T cd07630 108 ML 109 (198)
T ss_pred HH
Confidence 54
No 287
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=47.86 E-value=1.8e+02 Score=26.31 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=12.6
Q ss_pred hHhhHHHH---HHHHHHhhHHHHHHHHHHHHH
Q 025130 120 TRKSMATA---VSNLNKHLESVTEALTVAKKH 148 (257)
Q Consensus 120 Tkr~ms~A---v~sv~kqLeqVs~sL~~tKkh 148 (257)
+|..+... ..++...++++.+....+.++
T Consensus 43 ~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~ 74 (264)
T PF06008_consen 43 QKQQLDPLEKELESLEQDVENLQEKATKVSRK 74 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 444444444444444444333
No 288
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=47.85 E-value=2.8e+02 Score=27.20 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=24.2
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHH
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTV 144 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~ 144 (257)
++..+-.-=..|++-.+|+++|-|+=..++.-
T Consensus 197 i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~ 228 (412)
T PF04108_consen 197 ILKELHSLEQEMASLLESLTNHFDQCVTAVRH 228 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555589999999999999988877773
No 289
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.69 E-value=1.2e+02 Score=34.51 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH-HHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS-MIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~-~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
.|....+++..+...+++.+.++.+....++++..+++.+++.|...+..++. .+. ++.|+..+...=+.-..-+.+.
T Consensus 960 ~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~ 1038 (1293)
T KOG0996|consen 960 DLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQP 1038 (1293)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhH
Confidence 34444556666777777778888888888888888888888888888887777 555 7777776666555555555544
Q ss_pred H
Q 025130 220 C 220 (257)
Q Consensus 220 c 220 (257)
.
T Consensus 1039 ~ 1039 (1293)
T KOG0996|consen 1039 E 1039 (1293)
T ss_pred H
Confidence 3
No 290
>PRK00846 hypothetical protein; Provisional
Probab=47.49 E-value=1.3e+02 Score=23.40 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.+--..|.-|+..-++.+|+.++..-.-+.++..++.-+..+.+-++.+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333455566666666666666666665666666666555555555544
No 291
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=47.48 E-value=1.3e+02 Score=28.41 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 139 TEALTVAKKHLTQR---IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 139 s~sL~~tKkhLsqR---I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
+..|+..-||+.+. |..-|.-|=+.-|.+-..-+||.+++.|-.+|..+++.|-..-..||.-++.+|.+-
T Consensus 84 s~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 84 SLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888775 455577888888888999999999999999999999999988888888888888653
No 292
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=47.44 E-value=95 Score=28.23 Aligned_cols=60 Identities=12% Similarity=0.269 Sum_probs=41.8
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh--HHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD--LFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d--~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.|...|.++..|+...+.....+..|+.++..- +++++..+++++..|.+.+.||..+-+
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666666654 456888888888888888888876644
No 293
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=47.33 E-value=1.1e+02 Score=29.61 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=22.5
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 176 EACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|++--|.+-+.+|++++++|+++-..|.
T Consensus 114 EAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 114 EAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4555577788999999999999877776
No 294
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=47.29 E-value=1e+02 Score=27.97 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=42.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 025130 131 LNKHLESVTEALTVAKKHLTQRIQNL---NDKVEKQNEISKDIRKNVEEACDDLFKVEH 186 (257)
Q Consensus 131 v~kqLeqVs~sL~~tKkhLsqRI~~v---d~kld~~~eis~~i~~eV~~v~~d~~~i~~ 186 (257)
+.-.++|+..++..+|+=+..-|+.+ |+|||.+..++..+.-++.-++....+++.
T Consensus 127 ~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~ 185 (190)
T COG5143 127 IQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNL 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44458888888888888888888887 778999988888888887766655554443
No 295
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.25 E-value=2.8e+02 Score=28.52 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~ 163 (257)
+|++-+.-+.++|+-+.+|+..++.|++++
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555655555555555555544
No 296
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=47.19 E-value=1.4e+02 Score=23.61 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=22.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 155 NLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 155 ~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.|..|+.+..+.+...+-||.+++++=.....+++.++.-=..|+.+-..+
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qL 58 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444555555555555444444444444333333333333333
No 297
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=47.17 E-value=3.8e+02 Score=30.01 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=66.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
-+.+++-|-+.-+-+...+++|.--=+.....+.+..+..+-...++.+.......|+.++..-+..+++++.|+..+|.
T Consensus 279 ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 279 NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 34455555555555555555554444444444444555555566777778888888888998889999999999999999
Q ss_pred hhHHHhHHHHHHHHH
Q 025130 208 KQDITNIGMYLLCNF 222 (257)
Q Consensus 208 kQd~tn~GV~~Lc~f 222 (257)
+-|.+.+-+.-|-+-
T Consensus 359 krd~al~dvr~i~e~ 373 (1265)
T KOG0976|consen 359 KRDMALMDVRSIQEK 373 (1265)
T ss_pred HHHHHHHhHHHHHHH
Confidence 988888887776553
No 298
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=46.85 E-value=2.4e+02 Score=26.91 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALT 143 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~ 143 (257)
...++..+.++..+|+++..+=
T Consensus 142 d~~ad~lE~~~~~ld~ls~~if 163 (316)
T PRK11085 142 EQLADEIENIYSDLEKLSRVIM 163 (316)
T ss_pred HHhHHHHHHHHHHHHHHHHHhc
Confidence 3445555666666666665554
No 299
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.85 E-value=2.4e+02 Score=26.16 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH----------HHHHHHHHhhhhHHHhhhhHHHHH
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISK----------DIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~----------~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
.|+++.+.++..+|..+.++..-=+++.. ++-.-|.+..-.+. +++-++...++.+..-..|=+.+.
T Consensus 107 ~L~~~L~~~a~~~d~~~~~~~~~~~~l~~---~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~ 183 (243)
T cd07666 107 ELADSLKGMASCIDRCCKATDKRMKGLSE---QLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLK 183 (243)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 35666666666665555554443223322 22222333222222 334445555555555555555666
Q ss_pred HHHHhhhhhhhhh
Q 025130 193 SMIYCLDGKIDSL 205 (257)
Q Consensus 193 ~~V~~Le~Ki~~i 205 (257)
.-|+.||.|++.-
T Consensus 184 ~ev~~~e~kve~a 196 (243)
T cd07666 184 EEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666544
No 300
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=46.62 E-value=66 Score=23.55 Aligned_cols=31 Identities=10% Similarity=0.372 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~~ 164 (257)
=|+|+.+..+..-..+..|||.+..++|+..
T Consensus 11 lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE 41 (54)
T PF06825_consen 11 LLQQMQDKFQTMSDQILGRIDEMSSRIDDLE 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3555555555555567777777777776553
No 301
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=46.20 E-value=1.1e+02 Score=30.07 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 025130 140 EALTVAKKHLTQRIQN 155 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~ 155 (257)
+.|++-|.++++.|..
T Consensus 47 ~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 47 EELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555533
No 302
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=46.20 E-value=1.7e+02 Score=24.26 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHhhHHhHHHHHHHHHH
Q 025130 125 ATAVSNLNKHLESVTEALT-----VAKKHLTQRIQNLNDKVEKQNEISKD 169 (257)
Q Consensus 125 s~Av~sv~kqLeqVs~sL~-----~tKkhLsqRI~~vd~kld~~~eis~~ 169 (257)
++.+.++-..|-++.-.+. ..+..|.++|+.+...|++..++...
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555544444 67889999999999999999888887
No 303
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=46.06 E-value=1.3e+02 Score=24.90 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=24.0
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqR 152 (257)
|+++-++++.+.+|+.++++.+++-|.++..=
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el 34 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAEL 34 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888888888777777666543
No 304
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.91 E-value=1.1e+02 Score=29.51 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHH------HHHhhhhcCCCeE
Q 025130 37 ELQSLVERLSKSGEQDNFTDAIKDQLNRL------KFECQRASSGQIF 78 (257)
Q Consensus 37 ~lq~~lk~~~k~gd~~~~~d~L~aQV~~L------~~El~Lassr~iT 78 (257)
.+..++|+|.+ +.=..+.|..+..=| ++||+.|..|..|
T Consensus 4 li~~AVkFL~~---~kVr~aPli~kr~FLksKGLT~eEI~eAfk~~gi 48 (300)
T KOG2629|consen 4 LIENAVKFLQN---PKVRDAPLIKKREFLKSKGLTEEEIQEAFKRDGI 48 (300)
T ss_pred HHHHHHHHhcC---cccccchHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 46788888863 111123344455544 3677777766333
No 305
>PRK01156 chromosome segregation protein; Provisional
Probab=45.86 E-value=2.9e+02 Score=29.27 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHh
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~k 159 (257)
.++..++.+..+.+.+..+|..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~ei~~le~~ 188 (895)
T PRK01156 163 SLERNYDKLKDVIDMLRAEISNIDYL 188 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655555443
No 306
>PRK04654 sec-independent translocase; Provisional
Probab=45.86 E-value=1.9e+02 Score=26.79 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~ 154 (257)
+.|-.+...+++-+..+-.....+|.++.+-++
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445666677777777766667777776666543
No 307
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=45.73 E-value=1.3e+02 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=8.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHH
Q 025130 130 NLNKHLESVTEALTVAKKHLT 150 (257)
Q Consensus 130 sv~kqLeqVs~sL~~tKkhLs 150 (257)
.+-.+++++.+.+...-+.+-
T Consensus 7 ~i~~~v~~v~~im~~Ni~~ll 27 (89)
T PF00957_consen 7 QIQEQVEEVKNIMRENIDKLL 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333
No 308
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=45.61 E-value=2.9e+02 Score=29.17 Aligned_cols=87 Identities=14% Similarity=0.248 Sum_probs=58.4
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
+.-|..-|.++-+|||+--.-+... +|=.+.+..++-+|.|....++.+.+.++.-..+|..+++...+-|...-.
T Consensus 416 ~~~~~e~~~~L~qqlD~kd~~~n~~----sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~ 491 (607)
T KOG0240|consen 416 EDILTERIESLYQQLDQKDDQINKQ----SQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLT 491 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777888888888877766544 444555666677777777777777777777777777777766666665555
Q ss_pred hhhhhhhhhHH
Q 025130 201 KIDSLADKQDI 211 (257)
Q Consensus 201 Ki~~ie~kQd~ 211 (257)
.+.++..+-++
T Consensus 492 al~el~~~~~~ 502 (607)
T KOG0240|consen 492 ALEELAVNYDQ 502 (607)
T ss_pred HHHHHHHhhhH
Confidence 55555554443
No 309
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=45.49 E-value=3.9e+02 Score=28.12 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhHHhHHHH
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~ 163 (257)
..=|+|...||..|..+|-+.
T Consensus 42 ~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 42 KEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666554
No 310
>PRK11032 hypothetical protein; Provisional
Probab=45.49 E-value=80 Score=27.70 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH----hhhhHHHhhhh
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE----ACDDLFKVEHN 187 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~----v~~d~~~i~~d 187 (257)
|++|.+.|......|..-|+.....+. +....|++|+.. +++|++++...
T Consensus 12 l~~v~~~l~~~~~~l~~~ve~a~~~~~---~~~elT~dEl~lv~~ylkRDL~ef~~~ 65 (160)
T PRK11032 12 VASLTERLRNGERDIDALVESARKRVD---AAGELTRDEVDLITRAVRRDLEEFARS 65 (160)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555544555444444 444446666544 45666666554
No 311
>PF05802 EspB: Enterobacterial EspB protein
Probab=45.36 E-value=2.6e+02 Score=27.19 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
+-+.++.+=+.+++.+++..++-++|-.-.+++.+.++.+.+||...-+....|-..+..
T Consensus 148 q~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~ 207 (317)
T PF05802_consen 148 QQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAAD 207 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 346677888889999999999999999999999999999999999776666665554443
No 312
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.04 E-value=1e+02 Score=31.70 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=47.7
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
+.|.+|+.-=|...+.-.+..+.|.++|++++.--...=--|...++.-..|+.||=+|--+|...
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeil 402 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEIL 402 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888777777777888888888888874444444556667777777777777777666553
No 313
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=44.88 E-value=3.2e+02 Score=30.37 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=64.6
Q ss_pred HHhHhhHHHHHHHHHHhhHHHH---------HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH--hhh
Q 025130 118 YVTRKSMATAVSNLNKHLESVT---------EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK--VEH 186 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVs---------~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~--i~~ 186 (257)
|.+.+...+=+.++.+||+.|. .+.+..|. .-...+...+|...|=..++..+|..+...+.+ -|+
T Consensus 735 ~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e---~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~ 811 (984)
T COG4717 735 EQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKE---EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGG 811 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4488888999999999999642 22222220 001111111111111122233333333333333 234
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhc-ccCCChHHHH
Q 025130 187 NLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDG-KKGRTTESMQ 235 (257)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~-~~~~~~~~~q 235 (257)
-+..+++.-+.|=.+|.++.-+=-..-.++..|-+.+.. ++.++|..++
T Consensus 812 ~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~ 861 (984)
T COG4717 812 TVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQ 861 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Confidence 455666777777777777777777777788888888874 4488999876
No 314
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=44.78 E-value=2e+02 Score=25.00 Aligned_cols=51 Identities=18% Similarity=0.364 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.+.....+|..||..++..+.+.....+.++||...++--+.....-+..+
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777777777777777777777666665555544444444
No 315
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.53 E-value=2.2e+02 Score=24.91 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
..+++..++..+......+..++..+..|+.||..+..+.+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777777766554
No 316
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=44.46 E-value=1.3e+02 Score=22.33 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=4.3
Q ss_pred hHHHhhhhHHHH
Q 025130 180 DLFKVEHNLKDL 191 (257)
Q Consensus 180 d~~~i~~dv~~v 191 (257)
++.++..||+.+
T Consensus 18 kvdqLs~dv~~l 29 (56)
T PF04728_consen 18 KVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 317
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=44.42 E-value=2.9e+02 Score=26.29 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
+.|....+.+.+.+..+...-++..+-.+..+++..++...-.+.-.+...++.-...++...++++..-+++..=+..|
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555556666666666666555555555555555555555555555555555555555566666555555555544444
No 318
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=44.37 E-value=2.3e+02 Score=25.18 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=29.2
Q ss_pred chhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025130 114 ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 114 sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsq 151 (257)
.+-|--.|+...+....+-+...+.+..+..+|+..-+
T Consensus 95 ~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~ 132 (236)
T cd07651 95 ASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEA 132 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888888888888888877653
No 319
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=44.34 E-value=2.8e+02 Score=28.97 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=36.8
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhh---cccCCChHHH
Q 025130 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD---GKKGRTTESM 234 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~---~~~~~~~~~~ 234 (257)
++|+.+++..+...-.+....+.-+...+..++.+++.....+.-+.+|-.-.. ..+++++..|
T Consensus 119 ~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l 185 (546)
T KOG0977|consen 119 REELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREEL 185 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 444555555555555555555555555666666777777777666666655442 4556665554
No 320
>PRK09343 prefoldin subunit beta; Provisional
Probab=44.29 E-value=85 Score=25.75 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=11.3
Q ss_pred HhhHHHHHHHHHHhhHHHH
Q 025130 121 RKSMATAVSNLNKHLESVT 139 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs 139 (257)
|....+|.+.+.+.+|-..
T Consensus 66 ~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 66 KVDKTKVEKELKERKELLE 84 (121)
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 3366666666666655544
No 321
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.28 E-value=1.6e+02 Score=24.77 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=17.7
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
++|+......++.-...++++...+..++..+.+.+.+
T Consensus 47 q~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 47 QEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33343344444444444455555555555555544443
No 322
>PRK06696 uridine kinase; Validated
Probab=44.22 E-value=23 Score=30.97 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=22.7
Q ss_pred HHHHHHHHHHh-hhhcCCCeEE-EeCCCCCcceeeh
Q 025130 59 KDQLNRLKFEC-QRASSGQIFV-RNENSGGNATSLM 92 (257)
Q Consensus 59 ~aQV~~L~~El-~Lassr~iTV-vn~~sGg~~s~~i 92 (257)
.+++..|++++ ...+.+|+.| +.|.||+++|.+.
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 35678888888 6555555555 6787886665544
No 323
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=44.18 E-value=4.2e+02 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=15.1
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHH
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVA 145 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~t 145 (257)
...+.+=+.....+|++|.......
T Consensus 177 ~~~~~~~~~~~~~~l~~v~~~~~~~ 201 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELEHVTNSISEL 201 (670)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777766665554
No 324
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.86 E-value=2.6e+02 Score=25.70 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=48.5
Q ss_pred HHHhHhhHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 117 MYVTRKSMATAVSNLNKHLESVTEA-----LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 117 MfVTkr~ms~Av~sv~kqLeqVs~s-----L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+--+||.|+.+.+.+++.+.++++. |+.+-++|...++.+.+-...|. ..++..+.+-+..+-.|+..|
T Consensus 44 lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~~~QA------~~d~~tl~d~L~~~~~~~~~v 117 (230)
T cd07625 44 VSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDIDSIQA------TVDMATLYDGLEWISRDAYVV 117 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4458999999999999999888754 56777788777777666544332 344555555555555555555
Q ss_pred HHH
Q 025130 192 QSM 194 (257)
Q Consensus 192 ~~~ 194 (257)
+.+
T Consensus 118 Kea 120 (230)
T cd07625 118 KEA 120 (230)
T ss_pred HHH
Confidence 543
No 325
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=43.83 E-value=2.6e+02 Score=25.63 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=32.4
Q ss_pred cCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 025130 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (257)
Q Consensus 111 ws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~ 155 (257)
|||+. =|.+.+.+.|.++-++++.|+..+..-|..+..-...
T Consensus 70 WsF~s---~~~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~ 111 (209)
T COG5124 70 WSFKS---QTLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKAT 111 (209)
T ss_pred Eecch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 45654 3899999999999999999998888777666655433
No 326
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=43.77 E-value=1.6e+02 Score=31.55 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH 186 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~ 186 (257)
++-|.+|.+-|+.+.-|+++++....+-|.|+..++..+++.+.
T Consensus 99 e~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~ 142 (907)
T KOG2264|consen 99 EVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQR 142 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Confidence 34455666777777777777766666656555555554444433
No 327
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=43.77 E-value=2.1e+02 Score=24.61 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=7.0
Q ss_pred HHHHHHhhcCCCC
Q 025130 40 SLVERLSKSGEQD 52 (257)
Q Consensus 40 ~~lk~~~k~gd~~ 52 (257)
.++++|++.|=+.
T Consensus 6 ~~v~~Le~~Gft~ 18 (177)
T PF07798_consen 6 KFVKRLEAAGFTE 18 (177)
T ss_pred HHHHHHHHCCCCH
Confidence 3556666555444
No 328
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=43.65 E-value=3e+02 Score=29.81 Aligned_cols=83 Identities=18% Similarity=0.328 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhhHHhH-------HHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKH---LTQRIQNLNDKV-------EKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkh---LsqRI~~vd~kl-------d~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
+.+.-..+-.|++-+-++|.+...| |..=++.|--+| ++..+-...++++.+-....++.+++-.+.-..
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677888887777766543 444444444444 444444444555555555555555555555555
Q ss_pred HHHhhhhhhhhhh
Q 025130 194 MIYCLDGKIDSLA 206 (257)
Q Consensus 194 ~V~~Le~Ki~~ie 206 (257)
-|+-|-+||+.++
T Consensus 393 ki~~Lq~kie~Le 405 (775)
T PF10174_consen 393 KINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 329
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=43.56 E-value=1.1e+02 Score=27.48 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025130 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
.+++++++++.+++.+...++.+.+.|.-
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 46788999999999999999999998863
No 330
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.38 E-value=3.8e+02 Score=32.21 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=24.9
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHhhHHhHHHH
Q 025130 115 DLMYVTRKSMATAVSNLNKHLESVTE---ALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVs~---sL~~tKkhLsqRI~~vd~kld~~ 163 (257)
+.++.-|-.+..-+..+..+++...+ .+...++.+.+.++.+.+.+++.
T Consensus 897 ~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~ 948 (1930)
T KOG0161|consen 897 ERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEEL 948 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444 34444555555555554444433
No 331
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=43.34 E-value=2.4e+02 Score=25.02 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=44.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhH-----HHHHHHHHHHHHHHHHhhhhHHHhhhh----HHHHHHHHHhhhhhh
Q 025130 132 NKHLESVTEALTVAKKHLTQRIQNLNDKV-----EKQNEISKDIRKNVEEACDDLFKVEHN----LKDLQSMIYCLDGKI 202 (257)
Q Consensus 132 ~kqLeqVs~sL~~tKkhLsqRI~~vd~kl-----d~~~eis~~i~~eV~~v~~d~~~i~~d----v~~v~~~V~~Le~Ki 202 (257)
-++|..--..|+.||.+|.+.|++-..-+ +.+.-.-...-..|+|+...|+.|..| +..+++.-...+.=|
T Consensus 6 ~~kL~D~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eFi 85 (157)
T PF04778_consen 6 DKKLTDNDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEFI 85 (157)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444566777777777776655443 223333334445677777777776655 344444444444445
Q ss_pred hhhhhhhHHH
Q 025130 203 DSLADKQDIT 212 (257)
Q Consensus 203 ~~ie~kQd~t 212 (257)
.....+++++
T Consensus 86 ~~~K~NpnY~ 95 (157)
T PF04778_consen 86 NKNKNNPNYA 95 (157)
T ss_pred hhccCCccHH
Confidence 5555556555
No 332
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=43.33 E-value=1.8e+02 Score=27.30 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhccc
Q 025130 187 NLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKK 227 (257)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~ 227 (257)
-...+...++..+.++..++....-+..-...+|+|.+-..
T Consensus 310 f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~ 350 (370)
T PF02181_consen 310 FKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDP 350 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--T
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 36677888899999999999999999999999999995433
No 333
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=43.31 E-value=2.7e+02 Score=25.63 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHh-hhhcCC--CeEEEe
Q 025130 54 FTDAIKDQLNRLKFEC-QRASSG--QIFVRN 81 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El-~Lassr--~iTVvn 81 (257)
+-++++.+++.|.+++ .++..+ ..-++.
T Consensus 106 ~r~aia~e~~~l~~~i~~~~Nt~~~g~ylF~ 136 (287)
T PRK08073 106 ELKAIGAEIDQILKQVVYLANTKEQGRYVFG 136 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCeeeec
Confidence 3578999999999999 877742 444444
No 334
>PLN02320 seryl-tRNA synthetase
Probab=43.19 E-value=1.4e+02 Score=30.59 Aligned_cols=95 Identities=18% Similarity=0.302 Sum_probs=51.7
Q ss_pred eeeccCcchhHHHhHhhHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025130 107 WWKGLSFADLMYVTRKSMATAVSNLNKH-----LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 107 wWKGws~sDlMfVTkr~ms~Av~sv~kq-----LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
-||- .-|+=|. |.|-.....++.+- +|++- ++-..+|.+..+++.+.. +.++++++|+.. .-.++.
T Consensus 62 ~~~~--mlD~k~i-r~n~~~v~~~l~~R~~~~~vd~l~-~ld~~~r~~~~~~~~lr~---ern~~sk~i~~~--~~~~~~ 132 (502)
T PLN02320 62 QWKA--AIDFKWI-RDNKEAVAINIRNRNSNANLELVL-ELYENMLALQKEVERLRA---ERNAVANKMKGK--LEPSER 132 (502)
T ss_pred cccc--ccCHHHH-HhCHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh--hCCCCH
Confidence 3775 3566665 55655555555443 33332 234445666666666544 456677777651 222445
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
+.+..+++.+.+-+..||.++..++.+..
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQ 161 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666666655443
No 335
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.16 E-value=97 Score=25.95 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (257)
.-|.+|...==|-+.|+-|.|+.--.+|+++.++|.--|.+..+|...++
T Consensus 57 EeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~ 106 (120)
T KOG4559|consen 57 EEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTD 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35677777777778888888888888888888887777777766666554
No 336
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.14 E-value=5.1e+02 Score=29.59 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
...++.++.+++..++.....+..+......++.++.+.+.+
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~ 964 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEK 964 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665555555555555443
No 337
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=43.08 E-value=2.6e+02 Score=26.25 Aligned_cols=45 Identities=11% Similarity=0.238 Sum_probs=31.9
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~ 163 (257)
+.|..+-++-..++.++.+.++.|...++.....|+..-+++...
T Consensus 127 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l 171 (322)
T TIGR02492 127 ALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSL 171 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888888888888777776665544443333
No 338
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.97 E-value=1.6e+02 Score=23.06 Aligned_cols=11 Identities=36% Similarity=0.205 Sum_probs=6.7
Q ss_pred hhhheeeeeee
Q 025130 99 GALGYGYMWWK 109 (257)
Q Consensus 99 GavGYgYmwWK 109 (257)
--+|.+|+-.+
T Consensus 73 v~iG~~~~ve~ 83 (129)
T cd00890 73 VDLGTGVYVEK 83 (129)
T ss_pred EEecCCEEEEe
Confidence 45677776544
No 339
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=42.86 E-value=1.4e+02 Score=28.18 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=26.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~ 162 (257)
+....|.|||=-+.|.+..++|.+-++.+..|++.
T Consensus 125 vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 125 VKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556778888888888888888887777777655
No 340
>PRK10869 recombination and repair protein; Provisional
Probab=42.76 E-value=1.4e+02 Score=30.42 Aligned_cols=109 Identities=12% Similarity=0.118 Sum_probs=59.5
Q ss_pred CcchhHHHhHhhHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025130 112 SFADLMYVTRKSMATA------VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 112 s~sDlMfVTkr~ms~A------v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+..|.+.-..+.|+.. ...+...|++++..|..+...|....+.++-.=++..++ .+.+..++.=--+.|
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~i----e~Rl~~l~~L~rKyg 316 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAEL----EQRLSKQISLARKHH 316 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH----HHHHHHHHHHHHHhC
Confidence 4556666666777544 355777788888888888888888777665432222222 222333322223334
Q ss_pred hhHHHHHHHHHhhh----------hhhhhhhhhhHHHhHHHHHHHHHhh
Q 025130 186 HNLKDLQSMIYCLD----------GKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 186 ~dv~~v~~~V~~Le----------~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
.+++.|-..-..++ ..+..++...+-.-.-...+|+-++
T Consensus 317 ~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 317 VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333 3455555555555566666665554
No 341
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=42.68 E-value=3.1e+02 Score=27.88 Aligned_cols=74 Identities=22% Similarity=0.419 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH--HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ--NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 125 s~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~--~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
++.++.+.++-..+...+..+ ++|..|.+.+.+.+++. .++...++.++.+.-.++..+..+++........|+
T Consensus 28 ~eV~~~I~~~y~df~~~~~~~-~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~ 103 (593)
T PF06248_consen 28 EEVHSMINKKYSDFSPSLQSA-KDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE 103 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 34555666666666333 225566666677777777777777776666665554
No 342
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.67 E-value=2.5e+02 Score=26.78 Aligned_cols=10 Identities=10% Similarity=0.039 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q 025130 215 GMYLLCNFVD 224 (257)
Q Consensus 215 GV~~Lc~f~~ 224 (257)
.+..||.+..
T Consensus 269 ~l~~l~~~~~ 278 (359)
T COG1463 269 ALANLRPLAT 278 (359)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 343
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.56 E-value=2.5e+02 Score=27.31 Aligned_cols=135 Identities=13% Similarity=0.222 Sum_probs=89.5
Q ss_pred HHHHHHHHHHh-h-hhcC-CCeEEEeCCCCCcceeehhhhhHhhhhheeeeeeeccCcchhHHHhHhhHH-HHHHHHHHh
Q 025130 59 KDQLNRLKFEC-Q-RASS-GQIFVRNENSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMA-TAVSNLNKH 134 (257)
Q Consensus 59 ~aQV~~L~~El-~-Lass-r~iTVvn~~sGg~~s~~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms-~Av~sv~kq 134 (257)
..++..|.+|| + +-.+ |.|-.+-++.| +.| -.++++. |+...++.+
T Consensus 99 e~~IE~ltq~Itqll~~cqk~iq~~~a~~n--------------------------~~~----~~e~~~~~n~~~~la~~ 148 (305)
T KOG0809|consen 99 EHEIEELTQEITQLLQKCQKLIQRLSASLN--------------------------QLS----PSERLLRKNAQGYLALQ 148 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------------------------CCC----hHHHHHHHHHHHHHHHH
Confidence 77899999999 5 4443 45544433322 000 0456666 888889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHH--------------------------------HHHHHHHHHHHHHhhhhHH
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQ--------------------------------NEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~--------------------------------~eis~~i~~eV~~v~~d~~ 182 (257)
|.+.|...+...-..-.||++-+.+-.+- .+.+..=.+||+.+...+.
T Consensus 149 LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~ 228 (305)
T KOG0809|consen 149 LQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVREREKEVTQLVESIY 228 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999999988877777776655432111 1222223356888888888
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhhhhhhHHHh----HHHHHHHHHh
Q 025130 183 KVEHNLKDLQSMIYCLDGKIDSLADKQDITN----IGMYLLCNFV 223 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn----~GV~~Lc~f~ 223 (257)
....=++.+..+|-.=+.=+|+|.+|-+-|+ .|..-|..+-
T Consensus 229 dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe 273 (305)
T KOG0809|consen 229 DLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE 273 (305)
T ss_pred HHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH
Confidence 7777888888888888889999988766554 4555665543
No 344
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.32 E-value=93 Score=26.33 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhh
Q 025130 184 VEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+...+.++..-+..|+.||..+.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445445555555555444
No 345
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=42.24 E-value=1.7e+02 Score=23.10 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsq 151 (257)
+...++.+-+....+-+.|..+...|+.
T Consensus 45 ~~~~~~~~~~~~~~vi~~L~~a~~~l~~ 72 (113)
T PF02520_consen 45 VQAQKEEVRKNVTAVISNLSSAFAKLSA 72 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 346
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.19 E-value=81 Score=34.64 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=27.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q 025130 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN 173 (257)
Q Consensus 131 v~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e 173 (257)
=-|||++=-++|..-+..|++||+.+.+++-.+++..+.+...
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q 480 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQ 480 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhH
Confidence 3466666667777777777777777777766665544444433
No 347
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.91 E-value=4e+02 Score=27.29 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 025130 136 ESVTEALTVAKKHLT 150 (257)
Q Consensus 136 eqVs~sL~~tKkhLs 150 (257)
+++.+.+...+..+.
T Consensus 39 ~~~~~~~~~~~~~~~ 53 (475)
T PRK10361 39 EEMVAELSAAKQQIT 53 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 348
>PRK08913 flgL flagellar hook-associated protein FlgL; Validated
Probab=41.74 E-value=2.8e+02 Score=25.35 Aligned_cols=21 Identities=0% Similarity=-0.162 Sum_probs=17.9
Q ss_pred cchHHHHHHHHHHHHHh-hhhc
Q 025130 53 NFTDAIKDQLNRLKFEC-QRAS 73 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~Las 73 (257)
.+.++++++++.|.+++ .++.
T Consensus 105 ~~~~~i~~e~~~l~~~l~~~~N 126 (301)
T PRK08913 105 TDATSAAASAQQALTQLATLLN 126 (301)
T ss_pred ccHHHHHHHHHHHHHHHHHHHc
Confidence 34578999999999999 8776
No 349
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=41.67 E-value=83 Score=31.92 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH------HHHhhhhH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN------VEEACDDL 181 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e------V~~v~~d~ 181 (257)
.+||+..+-+|+|+.-.. ++..||++-...++...-|-+..++. |+++++|+
T Consensus 117 i~~~~~el~~q~e~~ea~------e~e~~~erh~~h~~~le~i~~~l~n~~~~pe~v~~~q~di 174 (548)
T COG5665 117 IHDCLDELQKQLEQYEAQ------ENEEQTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDI 174 (548)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHH
Confidence 689999999999987554 88999999999999888777777642 55555443
No 350
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.65 E-value=3e+02 Score=25.70 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=10.3
Q ss_pred HHhhhcccccccccCC
Q 025130 236 EQLKLGEKARRLLKAP 251 (257)
Q Consensus 236 ~~~k~~~~~~~~l~~~ 251 (257)
+.++..+|..|+-+-.
T Consensus 181 eri~~~~kg~gvvpl~ 196 (239)
T COG1579 181 ERIRKNKKGVGVVPLE 196 (239)
T ss_pred HHHHhcCCCceEEeec
Confidence 5667777777765543
No 351
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.65 E-value=1.4e+02 Score=31.22 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=55.8
Q ss_pred CcchhHHHhHhhHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh---HHHHHHHHHHHHHHHHHhhhhHH
Q 025130 112 SFADLMYVTRKSMATAV------SNLNKHLESVTEALTVAKKHLTQRIQNLNDK---VEKQNEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 112 s~sDlMfVTkr~ms~Av------~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k---ld~~~eis~~i~~eV~~v~~d~~ 182 (257)
+..|.++-..+.|++.+ ..+.+.|+..+..|..+..+|..-++.++-- |++..+=...++.=-..-+.+++
T Consensus 242 ~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~ 321 (557)
T COG0497 242 SALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIE 321 (557)
T ss_pred hHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 45566666666665443 3556666666666666666666666666543 44333322222222222222233
Q ss_pred HhhhhHHHHHHHHHh---hhhhhhhhhhhhHHHhHHHHHHHHHhh
Q 025130 183 KVEHNLKDLQSMIYC---LDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~---Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
.+-.-.+.++.-... -|.++..++..-+..-.-....|+-.+
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls 366 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALS 366 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333223333332222 334455555555555566666666655
No 352
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.65 E-value=1.1e+02 Score=22.04 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=12.0
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (257)
++.+.|+.+..++++..+-.+..+.++..
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333433
No 353
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.64 E-value=1.9e+02 Score=31.30 Aligned_cols=84 Identities=12% Similarity=0.267 Sum_probs=49.7
Q ss_pred eeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH---------HHHHHHHHHhh
Q 025130 108 WKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS---------KDIRKNVEEAC 178 (257)
Q Consensus 108 WKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis---------~~i~~eV~~v~ 178 (257)
.-.-.|||=||-| -+-+-+.++.|++.++..|+..+++|-+.+ +++..+-.+..+ ...+.+|.+++
T Consensus 53 fln~~fSv~~~tS---as~~s~~ia~q~~~L~q~lr~ldrqLh~qv--~~Rh~allaQat~~~~~d~~l~sl~~~v~~lq 127 (797)
T KOG2211|consen 53 FLNTLFSVQMMTS---ASKESNRIATQCDDLTQKLRELDRQLHAQV--LKRHMALLAQATEELFEDLELRSLLVKVAELQ 127 (797)
T ss_pred cccchhhhhhHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3344577777532 233456788888888888888888886543 222222211111 23445677777
Q ss_pred hhHHHhhhhHHHHHHHHH
Q 025130 179 DDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~ 196 (257)
+.+.+|..|++.....++
T Consensus 128 s~i~riknd~~epyk~i~ 145 (797)
T KOG2211|consen 128 SEIKRIKNDNKEPYKIIW 145 (797)
T ss_pred HHHHHHHHhhhhHHHHHH
Confidence 777777777766554443
No 354
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.56 E-value=2.4e+02 Score=24.61 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhHHhHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKK---HLTQRIQNLNDKVE 161 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKk---hLsqRI~~vd~kld 161 (257)
+.+-+..+-+++++....+...|. .|..||+.+-.+.+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333 33344444444444
No 355
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=41.39 E-value=1.7e+02 Score=30.28 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.+||.|-..|++ +.-.+.+.+-++-..+...+.++..+++.++.....+..++..-
T Consensus 16 ~aRr~LR~~iE~------~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~ 71 (618)
T PF06419_consen 16 EARRNLRSDIEK------RLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAA 71 (618)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888876 34445566667777777777777777777777777777766543
No 356
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.32 E-value=2.3e+02 Score=24.81 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=45.2
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
++..+|+.|+.+|.....+...+-+.-.++..|+..+|.-+..+=..=.+|+..|..+...-+.+..+...|
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l 89 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVL 89 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888888888777777777776655543333344444444444444444444443
No 357
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=41.30 E-value=1.9e+02 Score=25.70 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=12.4
Q ss_pred HHHHHHHhhhhhhhhhhhhh
Q 025130 190 DLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.+.+.|..++.+|.+|++++
T Consensus 139 ~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 139 LIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666776666654
No 358
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=41.19 E-value=2e+02 Score=23.61 Aligned_cols=30 Identities=7% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 025130 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~ 155 (257)
+...+++..|..+...|+...++|..-+-.
T Consensus 26 ~~~ld~~~~l~kL~~~i~eld~~i~~~v~~ 55 (132)
T PF10392_consen 26 DSELDISTPLKKLNFDIQELDKRIRSQVTS 55 (132)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455556666666555555555554433
No 359
>PRK15396 murein lipoprotein; Provisional
Probab=41.01 E-value=1.1e+02 Score=23.87 Aligned_cols=7 Identities=14% Similarity=-0.040 Sum_probs=2.8
Q ss_pred HHhHHHH
Q 025130 211 ITNIGMY 217 (257)
Q Consensus 211 ~tn~GV~ 217 (257)
++|.-|.
T Consensus 64 raN~RlD 70 (78)
T PRK15396 64 RANQRLD 70 (78)
T ss_pred HHHHHHH
Confidence 3444433
No 360
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=41.01 E-value=3.3e+02 Score=26.62 Aligned_cols=96 Identities=17% Similarity=0.283 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh--hhH---HHHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE--HNL---KDLQSMIY 196 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~--~dv---~~v~~~V~ 196 (257)
+-++.+|+.+....+..-+-|+.+ ..++.+-+..+.++..++.+.|.+-+ .+++..| ++| +.+..-|+
T Consensus 86 ~~l~~~v~d~~rri~~~kerL~e~---~ee~~~e~~~k~~~v~~l~e~I~~~l----~~~E~LG~eG~Veeaq~~~~e~E 158 (319)
T KOG0796|consen 86 EILERFVADVDRRIEKAKERLAET---VEERSEEAARKAEKVHELEEKIGKLL----EKAEELGEEGNVEEAQKAMKEVE 158 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhhcCCHHHHHHHHHHHH
Confidence 345556666666655555555555 22455555555444444443333322 2233332 122 23333344
Q ss_pred hhhh-hhhhhhhhhHHHhHHH------HHHHHHhh
Q 025130 197 CLDG-KIDSLADKQDITNIGM------YLLCNFVD 224 (257)
Q Consensus 197 ~Le~-Ki~~ie~kQd~tn~GV------~~Lc~f~~ 224 (257)
.|.. ++...+.--..++.+. .-+|+.|+
T Consensus 159 ~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCG 193 (319)
T KOG0796|consen 159 ELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCG 193 (319)
T ss_pred HHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhh
Confidence 4443 4444444444555555 67898876
No 361
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=41.00 E-value=1.2e+02 Score=22.27 Aligned_cols=35 Identities=9% Similarity=0.349 Sum_probs=23.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025130 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 129 ~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~ 163 (257)
..+-.+.+.+|+.|-.--.+.+.|||.|...+.+.
T Consensus 13 ~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 13 QQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455556777777777788888888888887665
No 362
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=40.92 E-value=1.7e+02 Score=23.17 Aligned_cols=17 Identities=0% Similarity=0.210 Sum_probs=7.0
Q ss_pred HHhHhhHHHHHHHHHHh
Q 025130 118 YVTRKSMATAVSNLNKH 134 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kq 134 (257)
|+.+.++.+.++.-.+.
T Consensus 28 Wa~~~~v~~~~~~f~~~ 44 (113)
T PF02520_consen 28 WAEKYGVQDQYNEFKAQ 44 (113)
T ss_pred HHHHCCcHHHHHHHHHH
Confidence 34444444444433333
No 363
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.91 E-value=1.8e+02 Score=30.38 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH---HHH
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS---MIY 196 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~---~V~ 196 (257)
.+.+.+++---+|+.++..|+..-..|. +|++.+..+|.....+.+--.-.+.++-.-..++..++..+.. ...
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~ 345 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLE 345 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3444444444555555555666655555 4888888888888777766555555555555555555554443 456
Q ss_pred hhhhhhhhhhhhhHHHhHHHHHH
Q 025130 197 CLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 197 ~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
.||.++..+..+=..+..-+-..
T Consensus 346 ~Le~~~~~l~~~~~~~A~~Ls~~ 368 (557)
T COG0497 346 ALEKEVKKLKAELLEAAEALSAI 368 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766655555544444
No 364
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=40.75 E-value=2.6e+02 Score=29.81 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=44.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025130 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
+-+..+--..++++.+|..+=.++.+||=++...++.+..=....++++..++++++....|-.
T Consensus 38 ~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~ 101 (766)
T PF10191_consen 38 SLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTA 101 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH
Confidence 3333333456777778888888888888888888888777777777777777777766655443
No 365
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=40.71 E-value=1.6e+02 Score=28.43 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=63.4
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhcccCC
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGR 229 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~ 229 (257)
.+||..|..+|-=|+--++..+..-.++-+-+.++..||+-.+..|--|-.|+.+-+..=..--.|.--+-+.++.++..
T Consensus 235 ~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~ 314 (330)
T KOG2991|consen 235 EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDE 314 (330)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 46899999999989888888888888888888999999999999988888888766654445555666666666655554
Q ss_pred C
Q 025130 230 T 230 (257)
Q Consensus 230 ~ 230 (257)
.
T Consensus 315 ~ 315 (330)
T KOG2991|consen 315 V 315 (330)
T ss_pred c
Confidence 4
No 366
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=40.67 E-value=2.5e+02 Score=33.40 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=23.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 025130 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 127 Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~ 164 (257)
=+.+|-.+....-.+-.++|+.+.+||+.|.+.+...+
T Consensus 781 ~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk 818 (1822)
T KOG4674|consen 781 LLDNLQTQKNELEESEMATKDKCESRIKELERELQKLK 818 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556677788888888877776655443
No 367
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=40.59 E-value=1.1e+02 Score=30.22 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=17.5
Q ss_pred HHhhHHHHHHHHH--HHHHHHHHHHhhHHhHHHHHHHHH
Q 025130 132 NKHLESVTEALTV--AKKHLTQRIQNLNDKVEKQNEISK 168 (257)
Q Consensus 132 ~kqLeqVs~sL~~--tKkhLsqRI~~vd~kld~~~eis~ 168 (257)
+.||.++++++.. ....|.+-++.++.-++....++.
T Consensus 306 s~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~ 344 (370)
T PLN03094 306 SEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISS 344 (370)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554 444455555554444444333333
No 368
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.51 E-value=1.4e+02 Score=32.36 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHH
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIG 215 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G 215 (257)
++-.+-|.+....+..+|.++|++++.. |..=..--.+-+.++...+..++.|..+|.+|...-..|-.=
T Consensus 32 eqSL~~id~li~ki~~eir~~d~~l~~~----------Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~ 101 (793)
T KOG2180|consen 32 EQSLTNIDSLIQKIQGEIRRVDKNLLAV----------VRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAM 101 (793)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH----------HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHH
Q 025130 216 MYLLCN 221 (257)
Q Consensus 216 V~~Lc~ 221 (257)
|.-+|.
T Consensus 102 V~eiTr 107 (793)
T KOG2180|consen 102 VQEITR 107 (793)
T ss_pred HHHHHH
No 369
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=40.39 E-value=1e+02 Score=32.40 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
++.+|..++++.+..++.+|.+...-..+. -..+..=+.++...++.|-..++.+=.||
T Consensus 256 sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q---------------------~~aL~~L~~qL~nnF~AISssI~dIy~RL 314 (610)
T PF01601_consen 256 SFNKAIGNIQLGFTTTASALNKIQDVVNQQ---------------------GQALNQLTSQLSNNFGAISSSIQDIYNRL 314 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456677777777777777765543222221 12222223455566666667777777888
Q ss_pred hhhhhhhHH---HhHHHHHHHHHhhcccCCChH
Q 025130 203 DSLADKQDI---TNIGMYLLCNFVDGKKGRTTE 232 (257)
Q Consensus 203 ~~ie~kQd~---tn~GV~~Lc~f~~~~~~~~~~ 232 (257)
|.+|+.+.. -|--+-.|=.|+...-.+..|
T Consensus 315 d~leAdaQVDRLItGRL~aLnafVtq~l~~~~e 347 (610)
T PF01601_consen 315 DQLEADAQVDRLITGRLAALNAFVTQQLTKYTE 347 (610)
T ss_dssp HHHHHH---------------------------
T ss_pred HHHhhcccccccccchHHHHHHHHHHHHHHHHH
Confidence 888887654 233455566677655555444
No 370
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=40.38 E-value=1.2e+02 Score=27.49 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025130 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
.|++|.|=++=-..+|.+..+-......++..+++||+.|..-|+-+..-..
T Consensus 133 vk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 133 VKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555554443333333332221222334566666666666666666665543
No 371
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=40.37 E-value=1.9e+02 Score=28.06 Aligned_cols=92 Identities=13% Similarity=0.330 Sum_probs=53.2
Q ss_pred HHHhHhhHHH----HHHHHHHhhHHHHH----HHHHHHHHHHHHHHhhHHhH--------------HHHHHHHHHHHHHH
Q 025130 117 MYVTRKSMAT----AVSNLNKHLESVTE----ALTVAKKHLTQRIQNLNDKV--------------EKQNEISKDIRKNV 174 (257)
Q Consensus 117 MfVTkr~ms~----Av~sv~kqLeqVs~----sL~~tKkhLsqRI~~vd~kl--------------d~~~eis~~i~~eV 174 (257)
=||-|.+.+= |+..+++=|++|-+ .|...|+.|..||+-|.--+ +-..++++..+.|+
T Consensus 14 tfAIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI 93 (302)
T PF05508_consen 14 TFAIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTKDLRREI 93 (302)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 3667777654 45666766666544 58888888888888776644 44445555555555
Q ss_pred HHhhhhHHHhhh----------hHHHHHHHHHhhhhhhhhhhhh
Q 025130 175 EEACDDLFKVEH----------NLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 175 ~~v~~d~~~i~~----------dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
......+..+-. .-..+..+++.++.=|.+||+-
T Consensus 94 ~~f~~~l~~~~~~~e~~~~~~~~~~~i~~V~~~ik~LL~rId~a 137 (302)
T PF05508_consen 94 DSFDERLEEAAEKEELSKSSENQKESIKKVERYIKDLLARIDDA 137 (302)
T ss_pred HHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444333 1222444455555555555553
No 372
>PRK11020 hypothetical protein; Provisional
Probab=40.11 E-value=1.2e+02 Score=25.68 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhhhhhhhhhHHH
Q 025130 191 LQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 191 v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
+..-+..|+.+|.++-++|.+-
T Consensus 36 f~~E~~~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 36 FEKEKATLEAEIARLKEVQSQK 57 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556688899888887653
No 373
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.10 E-value=3.6e+02 Score=28.24 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=26.9
Q ss_pred heecccccceeeccCCCcchHHHHHHHHHHHHhhcCCCC
Q 025130 14 MLAGLGYTGTILVKDGKLPELLRELQSLVERLSKSGEQD 52 (257)
Q Consensus 14 iLvGAG~~GSvl~k~GkLsd~~g~lq~~lk~~~k~gd~~ 52 (257)
.|+-.||-+.|-+|+=+.|. ..+|+..||++---=||.
T Consensus 116 yL~engfd~pis~k~l~~PS-~k~F~~IFK~LY~~lDp~ 153 (622)
T COG5185 116 YLKENGFDIPISIKFLKQPS-QKGFIIIFKWLYLRLDPG 153 (622)
T ss_pred HHHHcCCCcchhHHHhcCCc-cccHHHHHHHHHhccCCC
Confidence 45667888888888766666 678889999885433444
No 374
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.04 E-value=2e+02 Score=28.50 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHh
Q 025130 32 PELLRELQSLVERLS 46 (257)
Q Consensus 32 sd~~g~lq~~lk~~~ 46 (257)
+|+++.+|.++..+.
T Consensus 122 sdLv~Liq~l~a~f~ 136 (365)
T KOG2391|consen 122 SDLVGLIQELIAAFS 136 (365)
T ss_pred chHHHHHHHHHHHhc
Confidence 688888888886654
No 375
>PRK10807 paraquat-inducible protein B; Provisional
Probab=39.91 E-value=1.1e+02 Score=31.23 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 025130 123 SMATAVSNLNKH-LESVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 123 ~ms~Av~sv~kq-LeqVs~sL~~tKkhLsqRI~~vd~kld 161 (257)
++++.++.+.+= ||++-+.+.++-+++.+-+++++..++
T Consensus 421 ~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~ 460 (547)
T PRK10807 421 KLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLD 460 (547)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333332 344455555555555555555555554
No 376
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=39.87 E-value=1.6e+02 Score=22.17 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHh
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~k 159 (257)
.++++.+.+.+++.-+.+-|+.+=++
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~R 29 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLER 29 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46666777777777766666665443
No 377
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=39.86 E-value=3.1e+02 Score=27.02 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=45.8
Q ss_pred hhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH---HHHHHHHHHHHH
Q 025130 98 LGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK---QNEISKDIRKNV 174 (257)
Q Consensus 98 vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~---~~eis~~i~~eV 174 (257)
.+++|-|+ +---..+|=|+.--.++.||-..++.-=.+|++.....+.-+.+.+++|++-.++ ..+..+.+++.+
T Consensus 74 ~aaigvG~--yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~ 151 (406)
T PF04906_consen 74 CAAIGVGF--YGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQA 151 (406)
T ss_pred HHHHHccc--ccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 35666542 2223356777777777777766666444555555555555566666666665533 333344444555
Q ss_pred HHhhhhHHHh
Q 025130 175 EEACDDLFKV 184 (257)
Q Consensus 175 ~~v~~d~~~i 184 (257)
+.+-..++.|
T Consensus 152 ~~v~~~l~~l 161 (406)
T PF04906_consen 152 ENVVQQLDEL 161 (406)
T ss_pred HHHHHHHhcC
Confidence 4444444444
No 378
>PRK09110 flagellar motor protein MotA; Validated
Probab=39.79 E-value=2.1e+02 Score=27.07 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=60.9
Q ss_pred Hhhhhheeeeeeec-----cCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHH
Q 025130 97 TLGALGYGYMWWKG-----LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQR---IQNLNDKVEKQNEISK 168 (257)
Q Consensus 97 ~vGavGYgYmwWKG-----ws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqR---I~~vd~kld~~~eis~ 168 (257)
++|++.+||++=.| |.+|-+|-|-=-.+ ++.-++--+..+-.++...++-+..+ -+...+-++...+++.
T Consensus 10 ~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtl--ga~lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l~~l~~ 87 (283)
T PRK09110 10 VLGSVFGGYLLAGGHLGALIQPAELLIIGGAAL--GAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALLYELLR 87 (283)
T ss_pred HHHHHHHHHHHcCCChhHhhchhHHHHHHHhHH--HHHHHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Confidence 56777777777555 66777777766544 34456677888888888888888643 5556677788888888
Q ss_pred HHHHH-HHHhhhhHHHhhh
Q 025130 169 DIRKN-VEEACDDLFKVEH 186 (257)
Q Consensus 169 ~i~~e-V~~v~~d~~~i~~ 186 (257)
..|++ +-.+.++++++.+
T Consensus 88 ~aRk~GllaLE~~v~~~~~ 106 (283)
T PRK09110 88 KARQEGMMALEAHIENPEE 106 (283)
T ss_pred HHHhcCHHHHHhhhcCccc
Confidence 87766 5566666655553
No 379
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.75 E-value=73 Score=26.31 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
|+.|-.++..+..++.++.+-...++++|.++-+.=....-+-+.++..+..+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777777777777777777766666666666776666655
No 380
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=39.74 E-value=1.7e+02 Score=33.77 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
++++.+++++.||. |+.+..+|-+..+-...|.+++.-...||+.+..++..|..++..|+.+++.|..
T Consensus 1227 i~~l~~~~~~lr~~----l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQ----LQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred HHHHHHHHHHHHHH----HHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444333 3333444444444444556667677778888888888888888888888876654
No 381
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.72 E-value=2.8e+02 Score=25.17 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH-HhhhhHHHHHHHHHhhhh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF-KVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~-~i~~dv~~v~~~V~~Le~ 200 (257)
-.+.++...++++++.+++-...--+.. -+.+-.+|..+.++-..+++=- +.-+ -+..++..+...+...+.
T Consensus 87 ~~l~~~l~~~s~~~~~~s~~~~~~a~~~---~~~vlE~Lk~~~d~l~S~r~lf----~R~~k~~~~~i~~l~~ri~~~~~ 159 (246)
T cd07597 87 GDINEGLSSLSKHFQLLSDLSEDEARAE---EDGVLEKLKLQLDLLVSLRDLF----ERHEKLSLNNIQRLLKRIELNKK 159 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHH----HHHHhcccccHHHHHHHHHHHHH
Confidence 3567788889999988888776433332 2344455555555555554322 2222 345677777777777788
Q ss_pred hhhhhhhh
Q 025130 201 KIDSLADK 208 (257)
Q Consensus 201 Ki~~ie~k 208 (257)
|+.++..+
T Consensus 160 kl~~l~~~ 167 (246)
T cd07597 160 KLESLRAK 167 (246)
T ss_pred HHHHhhcC
Confidence 88777554
No 382
>PRK12803 flagellin; Provisional
Probab=39.70 E-value=3.6e+02 Score=26.07 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHHh-hhhcC---CCeEEEeC
Q 025130 53 NFTDAIKDQLNRLKFEC-QRASS---GQIFVRNE 82 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~Lass---r~iTVvn~ 82 (257)
.+-.+|+.+++.|.+|| .++.+ ...-++++
T Consensus 105 ~dR~ai~~Ei~qL~~~i~~ian~t~fnG~~lf~g 138 (335)
T PRK12803 105 ADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSN 138 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCCeeeccC
Confidence 45578999999999999 88873 46666654
No 383
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=39.59 E-value=4e+02 Score=29.85 Aligned_cols=76 Identities=14% Similarity=0.298 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
|-|.|-|...-.++..+.++++.+...+. -+|+++...+.+. .+++++-..|+..+++|+.+=...+..+
T Consensus 109 riLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l-------e~eLsAk~~eIf~~~~~L~nk~~~lt~~ 181 (1265)
T KOG0976|consen 109 RILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL-------EDELSAKAHDIFMIGEDLHDKNEELNEF 181 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHhhhhHHHHHHHHHHhhhhhHHhHH
Confidence 34566677777777666666665544333 3555555554433 3455555566666666665555555555
Q ss_pred hhhhhh
Q 025130 199 DGKIDS 204 (257)
Q Consensus 199 e~Ki~~ 204 (257)
+..+..
T Consensus 182 ~~q~~t 187 (1265)
T KOG0976|consen 182 NMEFQT 187 (1265)
T ss_pred HHHHHH
Confidence 444433
No 384
>PRK04098 sec-independent translocase; Provisional
Probab=39.52 E-value=2.7e+02 Score=24.57 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=31.3
Q ss_pred hHhhHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhhHH--hHHHHHHHHHHHHH
Q 025130 120 TRKSMATAVSNLNKH--LESVTEALTVAKKHLTQRIQNLND--KVEKQNEISKDIRK 172 (257)
Q Consensus 120 Tkr~ms~Av~sv~kq--LeqVs~sL~~tKkhLsqRI~~vd~--kld~~~eis~~i~~ 172 (257)
-||.++++-+.+-.. ++.+-+.+...|+.|.+-.++|.. .+|+..++.....+
T Consensus 39 ~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~~~~~~ 95 (158)
T PRK04098 39 VKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITAEN 95 (158)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhh
Confidence 455555555555443 344555666777777777777776 55666665544444
No 385
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=39.46 E-value=1.8e+02 Score=28.58 Aligned_cols=11 Identities=45% Similarity=0.779 Sum_probs=5.2
Q ss_pred CCCeEEEeCCCC
Q 025130 74 SGQIFVRNENSG 85 (257)
Q Consensus 74 sr~iTVvn~~sG 85 (257)
...|.+ +++.|
T Consensus 285 ~~~i~v-~~~~g 295 (451)
T PF03961_consen 285 GGSIIV-NGGKG 295 (451)
T ss_pred CCeEEE-eCCCC
Confidence 445555 44433
No 386
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=39.38 E-value=3e+02 Score=25.09 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHhhHHh-------HHHHHHHHHHHHHH--H----HHhhhhHHHhhhhH
Q 025130 123 SMATAVSNLNKHLESVTEALTVA-KKHLTQRIQNLNDK-------VEKQNEISKDIRKN--V----EEACDDLFKVEHNL 188 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~t-KkhLsqRI~~vd~k-------ld~~~eis~~i~~e--V----~~v~~d~~~i~~dv 188 (257)
+..+.+..+.++++++.+.+-.. +++...||-++... +..+.++...+... . .+.+..+..+.+++
T Consensus 146 ~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~~ 225 (318)
T TIGR00383 146 SYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHI 225 (318)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHH
Confidence 44556667777777776665332 22333333333333 33344444333221 1 22233344455567
Q ss_pred HHHHHHHHhhhhhhhhhhh
Q 025130 189 KDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie~ 207 (257)
+.+.+.+..+..+++.+.+
T Consensus 226 ~~l~~~~~~~~e~l~~l~d 244 (318)
T TIGR00383 226 LSLLEMIETYRELLSSLMD 244 (318)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666554
No 387
>PHA03386 P10 fibrous body protein; Provisional
Probab=39.30 E-value=1e+02 Score=25.13 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=11.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q 025130 126 TAVSNLNKHLESVTEALTVAKKH 148 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKkh 148 (257)
+|++.+...++-+.+.+...+..
T Consensus 12 ~dIkavd~KVdaLQ~qV~dv~~n 34 (94)
T PHA03386 12 DAVQEVDTKVDALQTQLNGLEED 34 (94)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc
Confidence 45555555555555555554444
No 388
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.29 E-value=1.8e+02 Score=28.34 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=41.0
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQR-IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqR-I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
+.+.+++..-+.++++++.+.|..+.+.|..= -++-.. +.++ .....+++.++...+.+...++...+.....|.
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~-~~~~---~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGI-LPDQ---EGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-Cccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888888888888887777652 222111 1111 112233444444444444445444444444444
Q ss_pred hhh
Q 025130 200 GKI 202 (257)
Q Consensus 200 ~Ki 202 (257)
.++
T Consensus 232 ~~l 234 (498)
T TIGR03007 232 RQL 234 (498)
T ss_pred HHh
Confidence 433
No 389
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.07 E-value=2.7e+02 Score=24.52 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=12.9
Q ss_pred HhhhhHHHHHHHHHhhhhhhhh
Q 025130 183 KVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
...++++.++..-..|...|++
T Consensus 167 ~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 167 KHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666665554
No 390
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=38.92 E-value=3.8e+02 Score=28.51 Aligned_cols=83 Identities=14% Similarity=0.250 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh-----------hhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA-----------CDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v-----------~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.-..-.-|.+.+..+..+++.+++|++.+....+.|+++.++. ...++-|=.|++.=++.+..||..++
T Consensus 180 ~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e 259 (629)
T KOG0963|consen 180 WAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVE 259 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555556666666655555555555554444 44466677888888888888888888
Q ss_pred hhhhhhHHHhHHHH
Q 025130 204 SLADKQDITNIGMY 217 (257)
Q Consensus 204 ~ie~kQd~tn~GV~ 217 (257)
.+...=.-+|++..
T Consensus 260 ~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 260 QLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHhhhhhhh
Confidence 88776555555543
No 391
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=38.84 E-value=2.1e+02 Score=29.75 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=11.7
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025130 154 QNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 154 ~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
|.....+|++......-..++..+++|++.|
T Consensus 40 d~a~~e~d~le~~l~~y~~~L~~~~~di~~I 70 (701)
T PF09763_consen 40 DEALAECDELESWLSLYDVELNSVRDDIEYI 70 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333343344333333
No 392
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=38.51 E-value=2.2e+02 Score=27.59 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=8.8
Q ss_pred hHHHHHHHHHhhhhhhhhhhh
Q 025130 187 NLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
-++.++.-+..+..+|+++|+
T Consensus 296 vv~el~k~~~~f~~qleELee 316 (336)
T PF05055_consen 296 VVKELKKNVESFTEQLEELEE 316 (336)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 333344444444444444444
No 393
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.29 E-value=2e+02 Score=30.17 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=36.4
Q ss_pred HHHHHHhhHHhHHHHHH---HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 149 LTQRIQNLNDKVEKQNE---ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 149 LsqRI~~vd~kld~~~e---is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|.+.++.|-.+++.|.= =.+.+.-|-.++.+++..|+.+.+.+.+.|..++.++.
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~ 370 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE 370 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445555555554422 22344566778888899999999999999988876543
No 394
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=38.27 E-value=4.6e+02 Score=26.89 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=19.6
Q ss_pred hhhhhhhhHHHhHHHHHHHHHhhcc-c--CCChHH-HHHHhhhccccc
Q 025130 202 IDSLADKQDITNIGMYLLCNFVDGK-K--GRTTES-MQEQLKLGEKAR 245 (257)
Q Consensus 202 i~~ie~kQd~tn~GV~~Lc~f~~~~-~--~~~~~~-~q~~~k~~~~~~ 245 (257)
|.++..-..--..--..|.+...|. + |.-.|. |++-+..+|=+.
T Consensus 174 i~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~sGL~~ 221 (475)
T PRK10361 174 IRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLRE 221 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHHhCCCc
Confidence 4444332222233344566666553 3 444554 444444444433
No 395
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=37.75 E-value=27 Score=28.83 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHH
Q 025130 145 AKKHLTQRIQNLNDKVEKQNEISKD 169 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~ 169 (257)
+..+|..|++.+.. +|+..+.++
T Consensus 79 ~~~~lqkRle~l~~--eE~~~L~~e 101 (104)
T PF11460_consen 79 TNEELQKRLEELSP--EELEALQAE 101 (104)
T ss_pred hHHHHHHHHHhCCH--HHHHHHHHH
Confidence 34478888887754 344444333
No 396
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=37.70 E-value=1.5e+02 Score=27.35 Aligned_cols=27 Identities=11% Similarity=0.368 Sum_probs=11.7
Q ss_pred hhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 177 ACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 177 v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
++++++.|+.++..+...++.+|..|.
T Consensus 20 ~~~~L~~i~~~~~~i~~~l~~~~~~l~ 46 (243)
T PF07160_consen 20 LKDTLSKIDQEVSAIEELLNDIEQELQ 46 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 397
>PLN02678 seryl-tRNA synthetase
Probab=37.68 E-value=4e+02 Score=26.87 Aligned_cols=16 Identities=13% Similarity=-0.014 Sum_probs=5.8
Q ss_pred HhhhhhhhhhhhhhHH
Q 025130 196 YCLDGKIDSLADKQDI 211 (257)
Q Consensus 196 ~~Le~Ki~~ie~kQd~ 211 (257)
..|-.+|..+|...+.
T Consensus 81 ~~Lk~ei~~le~~~~~ 96 (448)
T PLN02678 81 KELKKEITEKEAEVQE 96 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 398
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=37.61 E-value=1.4e+02 Score=20.82 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=10.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhh
Q 025130 132 NKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 132 ~kqLeqVs~sL~~tKkhLsqRI~~v 156 (257)
.+.+......|...-+.|...++.+
T Consensus 13 a~~~~~~~~~l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 13 AQQLQAQADELQSQLQQLESSIDSL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444
No 399
>PF14182 YgaB: YgaB-like protein
Probab=37.48 E-value=2.1e+02 Score=22.71 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=34.4
Q ss_pred HHHHhhHHhHHHHHHHHHHHH-----HHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025130 151 QRIQNLNDKVEKQNEISKDIR-----KNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~-----~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
-++=.|-..||-|.+|-++.+ .+...+++.+++...+++.||.+...
T Consensus 14 D~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 14 DKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888888887765 34777888888888888888877653
No 400
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=37.09 E-value=44 Score=29.48 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=26.2
Q ss_pred hhhhheecccccceeeccCCCcchHHHHHHHHHHHHhh
Q 025130 10 QKILMLAGLGYTGTILVKDGKLPELLRELQSLVERLSK 47 (257)
Q Consensus 10 ~kv~iLvGAG~~GSvl~k~GkLsd~~g~lq~~lk~~~k 47 (257)
||+++.||||+.-+ -.+|+.-+.++.+.+.+..
T Consensus 1 g~lvlFiGAG~S~~-----~glP~W~~Ll~~l~~~~~~ 33 (242)
T cd01406 1 GRVVIFVGAGVSVS-----SGLPDWKTLLDEIASELGL 33 (242)
T ss_pred CCEEEEecCccccc-----cCCCChHHHHHHHHHHcCC
Confidence 68999999999733 4789888888888877754
No 401
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=37.03 E-value=3.9e+02 Score=26.20 Aligned_cols=23 Identities=4% Similarity=-0.182 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHhhcccCCChHHH
Q 025130 212 TNIGMYLLCNFVDGKKGRTTESM 234 (257)
Q Consensus 212 tn~GV~~Lc~f~~~~~~~~~~~~ 234 (257)
...++..+++.......++|.++
T Consensus 288 ~~~~~~~~~~~l~~~~~~l~~yl 310 (412)
T PF04108_consen 288 LYNALSEALEELRKFGERLPSYL 310 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443334677764
No 402
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=36.96 E-value=3e+02 Score=24.43 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=49.4
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH--HHhhhhHHH--hhhhHHHHHHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV--EEACDDLFK--VEHNLKDLQSMI 195 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV--~~v~~d~~~--i~~dv~~v~~~V 195 (257)
-|.......+.+.+++++....+.. |..+|..+..++++...--..+.-.+ ...+..+.. -+.|+.+-...+
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~----l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~f 168 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAK----LQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARF 168 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5666667777777777766555544 44455555555555543322222111 111111111 145666777777
Q ss_pred HhhhhhhhhhhhhhHHH
Q 025130 196 YCLDGKIDSLADKQDIT 212 (257)
Q Consensus 196 ~~Le~Ki~~ie~kQd~t 212 (257)
+-+|.|+.++|..-+..
T Consensus 169 er~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 169 EQYERRVDELEAQAESY 185 (219)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77888888888766554
No 403
>PLN02320 seryl-tRNA synthetase
Probab=36.94 E-value=1.5e+02 Score=30.36 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhh--HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025130 140 EALTVAKKHLTQRIQNL--NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~v--d~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
+.|++-+.+++..|..- ....++..+-.+.+++++.++..++..+..++..
T Consensus 110 ~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 110 ERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555330 0112233333344444454444444444444433
No 404
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=36.93 E-value=3.2e+02 Score=24.63 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=13.1
Q ss_pred cchHHHHHHHHHHHHHh
Q 025130 53 NFTDAIKDQLNRLKFEC 69 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El 69 (257)
.-...|..+|++|...|
T Consensus 34 ~r~~~i~e~i~~Le~~l 50 (247)
T PF06705_consen 34 QRFQDIKEQIQKLEKAL 50 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567888899888888
No 405
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.92 E-value=85 Score=24.17 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=29.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025130 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 131 v~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+.+....+--.|+.+|..+. .+..++...++|.+-.+..++++..-+.=+..++
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~-~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIR-ELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443332 3555777777777777777766655555444444
No 406
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.91 E-value=3e+02 Score=31.15 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=19.8
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsq 151 (257)
+-++++ ||+ -+++|..++..+-..|+-.+..+++
T Consensus 668 l~ei~~--~~~---e~~~v~~~i~~le~~~~~~~~~~~~ 701 (1141)
T KOG0018|consen 668 LKEIQK--RRK---EVSSVESKIHGLEMRLKYSKLDLEQ 701 (1141)
T ss_pred HHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 444 5666666666666666666655554
No 407
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=36.85 E-value=3.2e+02 Score=24.62 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~v 156 (257)
.+++.++.++..-+..+.+.++.-|..+...|++.
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~ 122 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEEL 122 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34555556666666666666666555555555553
No 408
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=36.64 E-value=81 Score=24.90 Aligned_cols=15 Identities=7% Similarity=0.114 Sum_probs=8.9
Q ss_pred eeeccCcchhHHHhH
Q 025130 107 WWKGLSFADLMYVTR 121 (257)
Q Consensus 107 wWKGws~sDlMfVTk 121 (257)
..-|.|++|+.=..+
T Consensus 55 r~~G~sl~~i~~l~~ 69 (108)
T cd01107 55 RDLGFPLEEIKEILD 69 (108)
T ss_pred HHcCCCHHHHHHHHh
Confidence 345777777654433
No 409
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.55 E-value=3.5e+02 Score=27.37 Aligned_cols=64 Identities=23% Similarity=0.437 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
|...+|.+..+++.+-. +.++++++|......-.++.+.+..+++.+..-+..+|.+++.++..
T Consensus 34 ld~~~r~~~~~~e~l~~---~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~ 97 (429)
T COG0172 34 LDEERRKLLRELEELQA---ERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAE 97 (429)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 44555556555555543 34555666552211111134444444455544444555555544443
No 410
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=36.43 E-value=1.5e+02 Score=20.71 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld 161 (257)
|.+....++....+|...++.+...++
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~ 35 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSID 35 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333
No 411
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=36.37 E-value=3e+02 Score=27.67 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=30.9
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV 160 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kl 160 (257)
+.|..+-.+-..++.++.++++.|...++.+...|+.--+++
T Consensus 139 ~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~i 180 (507)
T PRK07739 139 GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEI 180 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888888777776665444333
No 412
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.37 E-value=3.2e+02 Score=24.49 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=33.3
Q ss_pred hHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 025130 116 LMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 116 lMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~v 156 (257)
-..-.|+.+.+.+..+.+.+...+..+..+|+.--++=..+
T Consensus 96 ~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 96 KQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999999998877664444
No 413
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=36.08 E-value=4.3e+02 Score=30.29 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=13.5
Q ss_pred CcchhHHHhHhhHHHHHHHHH
Q 025130 112 SFADLMYVTRKSMATAVSNLN 132 (257)
Q Consensus 112 s~sDlMfVTkr~ms~Av~sv~ 132 (257)
+.||+-+....+.+-||..+-
T Consensus 893 ~~p~f~~~~v~~~s~a~~~l~ 913 (1395)
T KOG3595|consen 893 QNPDFVPEKVNRASLACEGLC 913 (1395)
T ss_pred CCccCCHHHHHhhhhhhhhHH
Confidence 456666666666666776653
No 414
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=36.03 E-value=28 Score=23.34 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=21.2
Q ss_pred eeeeeeccCcchhHHHhHhhHHHH
Q 025130 104 GYMWWKGLSFADLMYVTRKSMATA 127 (257)
Q Consensus 104 gYmwWKGws~sDlMfVTkr~ms~A 127 (257)
-++.|+|++-+|--+++..+|.++
T Consensus 22 y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 22 YLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred EEEEECCCCCccCccccHHHhCch
Confidence 358999999999999999998876
No 415
>PRK10869 recombination and repair protein; Provisional
Probab=36.00 E-value=2.8e+02 Score=28.31 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEIS 167 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLs---qRI~~vd~kld~~~eis 167 (257)
..+.+.+.++--+|+.+...|..-...+. .|++.+.++|+....+.
T Consensus 264 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~ 312 (553)
T PRK10869 264 SGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLA 312 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777766554332 34555555554444443
No 416
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=35.97 E-value=3.2e+02 Score=24.34 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=65.1
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHhhHHhHHHHHHHHHHHHHHH-----------HHhh
Q 025130 121 RKSMATAVSNLNKHLESVTEALTV-----------AKKHLTQRIQNLNDKVEKQNEISKDIRKNV-----------EEAC 178 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~-----------tKkhLsqRI~~vd~kld~~~eis~~i~~eV-----------~~v~ 178 (257)
|+.|++.+..++..--.|.+.... ..+.+.+++-.+-.+|.......+.++-|. .++.
T Consensus 11 Rk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G~FP~~~Y~~l~ 90 (229)
T PF10334_consen 11 RKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKGRFPKETYQRLL 90 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCCHHHHHHHH
Confidence 778888888888887777776666 123455667777777777777777776443 2444
Q ss_pred hhHHHhhhhHHHHHHHHHhhh-hhh-hhh----h-hhhHH--HhHHHHHHHHHhhcccCCChHHH
Q 025130 179 DDLFKVEHNLKDLQSMIYCLD-GKI-DSL----A-DKQDI--TNIGMYLLCNFVDGKKGRTTESM 234 (257)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~~Le-~Ki-~~i----e-~kQd~--tn~GV~~Lc~f~~~~~~~~~~~~ 234 (257)
.-..+|-+=+..+..+...|| ... ..+ . ...++ .-.-+-++|...=..+.++|+++
T Consensus 91 ~~~~~il~~l~~l~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~pLP~~l 155 (229)
T PF10334_consen 91 ELCQNILDLLSLLSYVSTRLEPSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQPLPPYL 155 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCccC
Confidence 444555555555555555553 110 000 0 01111 12245556665556677888763
No 417
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=35.97 E-value=2.6e+02 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=13.1
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 178 CDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
+.+.++..+|++..+..+..++.+
T Consensus 89 q~~~~~l~~ei~~~~~~~sd~~k~ 112 (115)
T COG4980 89 QPEIERLKSEIEDLQEAISDETKT 112 (115)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Confidence 333455666666666555555443
No 418
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.97 E-value=4.4e+02 Score=26.89 Aligned_cols=87 Identities=10% Similarity=0.187 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHH----------------------HHHHHHHHHHhhHHhHHHHHHHHHHHHHHH------
Q 025130 123 SMATAVSNLNKHLESVTEALTV----------------------AKKHLTQRIQNLNDKVEKQNEISKDIRKNV------ 174 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~----------------------tKkhLsqRI~~vd~kld~~~eis~~i~~eV------ 174 (257)
++-+|.+.+.+|+|.+.+.+.. +|+-++.+|++...+++....+--+|-+-.
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl 316 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVL 316 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 4556666777777766665543 345567778888888888888777776432
Q ss_pred HHhhhhHHHh------hhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 175 EEACDDLFKV------EHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 175 ~~v~~d~~~i------~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.+.+.....+ +.-.+.|++.+..+..-+++=++=+
T Consensus 317 ~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~ 357 (439)
T KOG2911|consen 317 QAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVE 357 (439)
T ss_pred HHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHH
Confidence 1222222221 3444567777777666666544433
No 419
>PRK12687 flagellin; Reviewed
Probab=35.95 E-value=3.8e+02 Score=25.32 Aligned_cols=29 Identities=7% Similarity=-0.046 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHHh-hhhcC---CCeEEEe
Q 025130 53 NFTDAIKDQLNRLKFEC-QRASS---GQIFVRN 81 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~Lass---r~iTVvn 81 (257)
.+-..|+.++++|.+|| ..+.+ +.+-+++
T Consensus 107 ~dr~~i~~Ei~~L~~~i~~ia~~~~fnG~~lL~ 139 (311)
T PRK12687 107 IDRTKIQSEITAIQNDLKNTAGLAVFNGENWLS 139 (311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCEeccC
Confidence 56788999999999999 87763 4566665
No 420
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=35.85 E-value=90 Score=24.59 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=25.5
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhh-hhHHHhHHHHHHHHHhhcccCCChHHH
Q 025130 182 FKVEHNLKDLQSMIYCLDGKIDSLAD-KQDITNIGMYLLCNFVDGKKGRTTESM 234 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~-kQd~tn~GV~~Lc~f~~~~~~~~~~~~ 234 (257)
.+|..|++..+..+..+..|+..++. ++..-|.=|.-+|...+-....++.+|
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L 57 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFL 57 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34444444444444444444444443 344455556666665544444444444
No 421
>PRK09458 pspB phage shock protein B; Provisional
Probab=35.51 E-value=26 Score=27.39 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=27.8
Q ss_pred hHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025130 116 LMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 116 lMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~ 162 (257)
|=|.||+.-+. .++..=++--+.|...-+++.+||+.|.+=||.
T Consensus 24 LHY~sk~~~~~---~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 24 LHYRSKRQGSQ---GLSQEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HhhcccccCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44777776543 233333344445556667899999998887773
No 422
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=35.47 E-value=2.2e+02 Score=22.38 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHH
Q 025130 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
...++|..+..|-+++-.+++....-...||.-=.++...=+.+...|.
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666665555555555555555444444444443
No 423
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.41 E-value=3.6e+02 Score=24.82 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=9.4
Q ss_pred hhHHHhhhhHHHHHHHHHhhhh
Q 025130 179 DDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
+.|-+|..|+..+..++..++.
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~ 74 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAES 74 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 424
>COG1511 Predicted membrane protein [Function unknown]
Probab=35.37 E-value=5.3e+02 Score=27.56 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=56.9
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHH--HHHHHHH-------HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEAL--TVAKKHL-------TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL--~~tKkhL-------sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
|-+.++++.+.+++++-..+... -.+=+.+ ...+..+.+-.++.....+.+.+..+.+..-...+..++..
T Consensus 145 ~~~~~~~l~~~is~~~t~t~~~~v~~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (780)
T COG1511 145 TEKAADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNA 224 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHH
Confidence 44456667777777776655554 1222222 33444444445555555555555455555555555555555
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhh
Q 025130 191 LQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 191 v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
+..-+..+...+..+....+..+.|+..|-+..+
T Consensus 225 l~~~~~~l~d~l~~i~~~~~~~~~~~~~l~~~~~ 258 (780)
T COG1511 225 LTSGLTTLTDGLNQLDSGLGTLAAGIGELKQGAE 258 (780)
T ss_pred HhhhhHHHhhhHHHHHhhhhHHhhhhHHHHHHHH
Confidence 5555666666666666655555555555555544
No 425
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=35.23 E-value=3.1e+02 Score=28.54 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=31.1
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k 159 (257)
+.|..+-..-.+++.++.++++.|...++.+..+|+.--++
T Consensus 139 a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~ 179 (627)
T PRK06665 139 AERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEE 179 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888888888887777544333
No 426
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=35.16 E-value=1.4e+02 Score=20.91 Aligned_cols=27 Identities=4% Similarity=0.318 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHH
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKD 169 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~ 169 (257)
...+..+..+++.++.++++..++...
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~~~~~~ 61 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQALRAQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444433
No 427
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=35.07 E-value=4e+02 Score=27.66 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=41.2
Q ss_pred eeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 025130 106 MWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 106 mwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k 159 (257)
-|-+-.+.||.| |+++.++++.-=-.|| +-.|.++|+-|..|.+++..-
T Consensus 157 ~~a~d~~~s~~~--q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~ 205 (554)
T KOG4677|consen 157 SYAPDLGRSKGE--QYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF 205 (554)
T ss_pred hcccccccchhh--hHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH
Confidence 577888999999 8999998887776666 888999999999998887665
No 428
>PRK11020 hypothetical protein; Provisional
Probab=34.84 E-value=40 Score=28.47 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHHHHhhcCCCC------cchHHHHHHHHHHH-----------HHh-hhhcCCCeEE
Q 025130 30 KLPELLRELQSLVERLSKSGEQD------NFTDAIKDQLNRLK-----------FEC-QRASSGQIFV 79 (257)
Q Consensus 30 kLsd~~g~lq~~lk~~~k~gd~~------~~~d~L~aQV~~L~-----------~El-~Lassr~iTV 79 (257)
+|+|-++.++.=+......||.. ...+.|.++|.+|+ +.| ++.-+|+||=
T Consensus 9 ~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK 76 (118)
T PRK11020 9 RLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITK 76 (118)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccH
Confidence 35666666665555555566665 45667777777664 445 5666788875
No 429
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.75 E-value=5.7e+02 Score=29.84 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=16.5
Q ss_pred HHHhHhhHHHHHH-------------HHHHhhHHHHHHHHHHHH
Q 025130 117 MYVTRKSMATAVS-------------NLNKHLESVTEALTVAKK 147 (257)
Q Consensus 117 MfVTkr~ms~Av~-------------sv~kqLeqVs~sL~~tKk 147 (257)
.+=||-+++.|-+ .+-++.|.|-++|+.|-+
T Consensus 1534 L~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~ 1577 (1758)
T KOG0994|consen 1534 LSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADV 1577 (1758)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666655432 334455566666655533
No 430
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=34.70 E-value=1.6e+02 Score=21.80 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=26.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
++.+|-.....-..+.+.-......+.++..-++-+++.+=.|..|||
T Consensus 6 ~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiD 53 (57)
T PF02346_consen 6 IEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKID 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333333333333444444444556666677777777777777776
No 431
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=34.70 E-value=2.8e+02 Score=23.40 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=15.5
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 174 VEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
|.+++..+++++.-++++=..++.|...
T Consensus 89 v~els~~L~~~~~lL~~~v~~ie~LN~~ 116 (131)
T PF10158_consen 89 VNELSQQLSRCQSLLNQTVPSIETLNEI 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5556666666666555555555554443
No 432
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.60 E-value=3.7e+02 Score=24.78 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=17.2
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025130 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
+|+.+.+++.+.....+..|+.+..++..+..
T Consensus 68 ~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~ 99 (291)
T PF10475_consen 68 SVQELQDELEEALVICKNLRRNLKSADENLTK 99 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455555555555555555555555555444
No 433
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=34.57 E-value=1.3e+02 Score=22.17 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=10.0
Q ss_pred HHHHHHHhhHHhHH
Q 025130 148 HLTQRIQNLNDKVE 161 (257)
Q Consensus 148 hLsqRI~~vd~kld 161 (257)
++.+||+.+..+||
T Consensus 76 ~l~~~i~~L~~~le 89 (89)
T PF05164_consen 76 RLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC
Confidence 67777777777665
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.51 E-value=2.4e+02 Score=30.19 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHhhcCCCC-cchHHHHHHHHHHHHHh-hhhcC-------------CCeEEEeCCCCCcceeehhhh
Q 025130 31 LPELLRELQSLVERLSKSGEQD-NFTDAIKDQLNRLKFEC-QRASS-------------GQIFVRNENSGGNATSLMIPA 95 (257)
Q Consensus 31 Lsd~~g~lq~~lk~~~k~gd~~-~~~d~L~aQV~~L~~El-~Lass-------------r~iTVvn~~sGg~~s~~ivpa 95 (257)
++++...+..++..-..--|.+ |..+.|-.+++++.++| +...+ +.||+-| +-+.+-|++
T Consensus 128 ~~~l~~~i~~~id~~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~-----~r~~i~vk~ 202 (782)
T PRK00409 128 LPELEQEIHNCIDEEGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRN-----DRYVLPVKA 202 (782)
T ss_pred cHHHHHHHHHHhCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEC-----CEEEEEech
Q ss_pred hHhhhhheeeeeeeccCcch-hHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH
Q 025130 96 ATLGALGYGYMWWKGLSFAD-LMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI 170 (257)
Q Consensus 96 A~vGavGYgYmwWKGws~sD-lMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i 170 (257)
---+.+. || |.+.|-|- ..|++-..+..--+.+..--.+..+.....-++|+.+|..--..+....++...+
T Consensus 203 ~~~~~~~-g~--v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~l 275 (782)
T PRK00409 203 EYKHAIK-GI--VHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDEL 275 (782)
T ss_pred hhhccCC-Cc--eeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 435
>PRK09039 hypothetical protein; Validated
Probab=34.45 E-value=4.3e+02 Score=25.41 Aligned_cols=54 Identities=9% Similarity=0.121 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
--...+.+.++.+.++..+..+|..++.-...|+.-|+..|..-.-...-+.-|
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666777777777777777777766666444444444443
No 436
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=34.44 E-value=2.8e+02 Score=25.02 Aligned_cols=15 Identities=13% Similarity=0.414 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHh
Q 025130 55 TDAIKDQLNRLKFEC 69 (257)
Q Consensus 55 ~d~L~aQV~~L~~El 69 (257)
...|..++.+..++.
T Consensus 43 q~~Le~kIe~e~~~A 57 (191)
T PTZ00446 43 QVQVEKKIKQLEIEA 57 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
No 437
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=34.43 E-value=22 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.875 Sum_probs=11.9
Q ss_pred eehhhhhHhh-hhh-eeeeeee
Q 025130 90 SLMIPAATLG-ALG-YGYMWWK 109 (257)
Q Consensus 90 ~~ivpaA~vG-avG-YgYmwWK 109 (257)
+.++|.+++. +++ ..|+|||
T Consensus 16 ~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 16 GVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EEEechHHHHHHHHHHhheEEe
Confidence 5667766653 333 4566886
No 438
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=34.41 E-value=1.1e+02 Score=31.45 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhcccCCChHHH
Q 025130 159 KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRTTESM 234 (257)
Q Consensus 159 kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~~ 234 (257)
...+...++.++.+++.++.+-++.+.+++.+++++|-.=.--+|-+-.+|.-...-+.-=|=|---+.+..-+.+
T Consensus 422 ~~~~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~a~~Gg~C~~l~~~CC~y~~~s~~v~~~i 497 (561)
T PF00429_consen 422 STQQYRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALDLLTAEQGGLCAALKEECCFYINHSGIVRDSI 497 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS-------------HHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhhcCCchhhhCCceEEEECCccchhHHH
Confidence 4667777888888888888888888889999999888776667777777888777777666666543334444444
No 439
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=34.37 E-value=5e+02 Score=28.21 Aligned_cols=89 Identities=21% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH
Q 025130 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM 194 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (257)
+.|-..|.+|....+.-..+++....-| ++..++|..|..+|+..++-......++...+.....+..-...+..-
T Consensus 599 E~le~eK~~Le~~L~~~~d~lE~~~~qL----~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E 674 (769)
T PF05911_consen 599 EKLESEKEELEMELASCQDQLESLKNQL----KESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE 674 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHhhhhhhhhhhh
Q 025130 195 IYCLDGKIDSLAD 207 (257)
Q Consensus 195 V~~Le~Ki~~ie~ 207 (257)
+..|-.|+..++.
T Consensus 675 ~~~l~~Ki~~Le~ 687 (769)
T PF05911_consen 675 AEELQSKISSLEE 687 (769)
T ss_pred HHHHHHHHHHHHH
No 440
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=34.28 E-value=3.4e+02 Score=24.15 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
|.+..+.++.+...++.+.+.....+..+.+++..+..
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~ 131 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAE 131 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333
No 441
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=34.21 E-value=3.5e+02 Score=26.79 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=29.7
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~ 155 (257)
+.|..+-.+-..+.+++.+++..|...++.+.+.|+.
T Consensus 127 ~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~ 163 (456)
T PRK07191 127 PMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDA 163 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688888888888888888888888888887776644
No 442
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=34.19 E-value=3.8e+02 Score=24.74 Aligned_cols=19 Identities=26% Similarity=0.085 Sum_probs=9.0
Q ss_pred hhhhHHHhHHHHHHHHHhh
Q 025130 206 ADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 206 e~kQd~tn~GV~~Lc~f~~ 224 (257)
+.+++.--.-+..|-..+.
T Consensus 115 ~~n~~~L~~~~~~L~p~~~ 133 (267)
T PF11887_consen 115 ADNRDNLIRALDDLRPTTD 133 (267)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3444444445555544443
No 443
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.10 E-value=2.1e+02 Score=21.71 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHH
Q 025130 159 KVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 159 kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
+-.....+++..+..+.+....+..
T Consensus 27 ~el~~~~~IKKLr~~~~e~e~~~~~ 51 (74)
T PF12329_consen 27 KELKLNNTIKKLRAKIKELEKQIKE 51 (74)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 444
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.08 E-value=2.8e+02 Score=27.05 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=16.7
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHL 149 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhL 149 (257)
|.|.-..-++.+++..++-+.+|...|++|
T Consensus 19 thr~Y~qKleel~~lQ~~C~ssI~~QkkrL 48 (330)
T PF07851_consen 19 THRSYKQKLEELSKLQDKCSSSISHQKKRL 48 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666666544
No 445
>PRK09303 adaptive-response sensory kinase; Validated
Probab=34.04 E-value=1.2e+02 Score=28.43 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhhHHHh
Q 025130 165 EISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 165 eis~~i~~eV~~v~~d~~~i 184 (257)
.++-++++-++.++.-++.+
T Consensus 157 ~iaHeLrtPLt~i~~~~e~l 176 (380)
T PRK09303 157 MLAHDLRTPLTAASLALETL 176 (380)
T ss_pred HHhHhhcchHHHHHHHHHHH
Confidence 34444555555554444443
No 446
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=33.98 E-value=3.4e+02 Score=24.19 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=17.1
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.++..-.........++..++.-+..|..||.+
T Consensus 157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555555655554
No 447
>PHA02607 wac fibritin; Provisional
Probab=33.79 E-value=1.9e+02 Score=29.57 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH---HH-----HHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK---QN-----EISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~---~~-----eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
-+|..|--.|-|..+++-+-...++..+..=+|.+..--+- +- +-..+...+|..++.++++...++..+..
T Consensus 41 G~lNRa~v~VQ~NV~~ld~n~~~~~~kine~vd~vn~I~~~L~~~gD~~~i~qv~~n~~dI~~lk~~~~~~~~~l~~~~~ 120 (454)
T PHA02607 41 GSLNRAGVNVQKNVEQLDENTKKTKDKINEVVDDVNTIQENLDVIGDISVIDQINQNVADIEVLKKDVSDTTDKLAGTTN 120 (454)
T ss_pred cccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 46777777888888888888888777666555544322111 00 01122233444445555555555555555
Q ss_pred HHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhcccC
Q 025130 194 MIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKG 228 (257)
Q Consensus 194 ~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~ 228 (257)
.+..++.+|.......|...+=|+.=.-|++.+-+
T Consensus 121 ~~~~~~~~iG~~~p~~d~~~rTVr~di~~IK~elG 155 (454)
T PHA02607 121 EVDEIEADIGVFNPEADPVTRTIRNDILWIKTELG 155 (454)
T ss_pred hHHHHHHhcCCcCcccCCCccchhhhHHHHHHHhc
Confidence 55555555555555555555556555556554433
No 448
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.75 E-value=1.6e+02 Score=27.21 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=14.0
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHH
Q 025130 121 RKSMATAVSNLNKHLESVTEALT 143 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~ 143 (257)
+.=|++++..+..|+|..-..+.
T Consensus 124 ~~wl~~~Id~L~~QiE~~E~E~E 146 (233)
T PF04065_consen 124 RDWLKDSIDELNRQIEQLEAEIE 146 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777666654443
No 449
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=33.62 E-value=2.9e+02 Score=26.91 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHhhHHh-----------------HHHHHHHHHHHHH
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVT---EALTVAKKHLTQRIQNLNDK-----------------VEKQNEISKDIRK 172 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs---~sL~~tKkhLsqRI~~vd~k-----------------ld~~~eis~~i~~ 172 (257)
+.+++.+...-..++++-+.+-|...- +.+.+.+.-...=++..++- ++.+.++.++-++
T Consensus 195 ~~ey~~~~~~~~~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe 274 (320)
T TIGR01834 195 MADYQLLEADIGYKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQE 274 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHH-hhhhHHHHHHHHHhhhhhhhhhh
Q 025130 173 NVEEACDDLFK-VEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 173 eV~~v~~d~~~-i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.+.+.-..+-- .++||+.+++.+..||.++.+++
T Consensus 275 ~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~ 309 (320)
T TIGR01834 275 IVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLK 309 (320)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 450
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.47 E-value=6.3e+02 Score=28.77 Aligned_cols=100 Identities=12% Similarity=0.198 Sum_probs=53.0
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQR---IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqR---I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
||=-+-.-+..-.++|..+.++|..+++++..+ |+.+-..+.+...=......+...++..+..+..+...++...+
T Consensus 665 srLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~ 744 (1200)
T KOG0964|consen 665 SRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLE 744 (1200)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 333444455556778888999999988876443 44444433333333333334444444444555555555555555
Q ss_pred hhhhhhhhhhhhhHHHhHHHHHH
Q 025130 197 CLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 197 ~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
-...+|..+...-...-.+-.++
T Consensus 745 ~k~~~Le~i~~~l~~~~~~~~~~ 767 (1200)
T KOG0964|consen 745 PKGKELEEIKTSLHKLESQSNYF 767 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 54555555544444444444444
No 451
>PHA01750 hypothetical protein
Probab=33.38 E-value=1.3e+02 Score=23.43 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=4.7
Q ss_pred HHHHhhHHhHHH
Q 025130 151 QRIQNLNDKVEK 162 (257)
Q Consensus 151 qRI~~vd~kld~ 162 (257)
+.++|+-..+++
T Consensus 42 ~ELdNL~~ei~~ 53 (75)
T PHA01750 42 SELDNLKTEIEE 53 (75)
T ss_pred HHHHHHHHHHHH
Confidence 334444333333
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.37 E-value=6.3e+02 Score=27.05 Aligned_cols=74 Identities=19% Similarity=0.088 Sum_probs=53.3
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhh
Q 025130 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
|-|.+-|.==.+.+-=..++++....-..+++..+.+.+.|.++-+-|+.+++++-++|+.--+-...|-+-.+
T Consensus 574 qYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~ 647 (741)
T KOG4460|consen 574 QYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFH 647 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 33444333333344445555555666667778888999999999999999999999999998887777766554
No 453
>PLN03184 chloroplast Hsp70; Provisional
Probab=33.33 E-value=4e+02 Score=27.89 Aligned_cols=69 Identities=6% Similarity=0.187 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHH-----HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 137 SVTEALTVAKKHLTQRIQNLNDKVEKQ-----NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 137 qVs~sL~~tKkhLsqRI~~vd~kld~~-----~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
........+|.++..-|..+..++++. .+-.+.+++.+++.++=|. ++|.+.+++..+.|+..+..++.
T Consensus 559 ~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~--~~d~~~ik~~~~~l~~~l~~l~~ 632 (673)
T PLN03184 559 KEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIA--SGSTQKMKDAMAALNQEVMQIGQ 632 (673)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777888888888888642 1222334444555555454 35677777777777777777765
No 454
>PF13514 AAA_27: AAA domain
Probab=33.28 E-value=7e+02 Score=27.55 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH--hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLND--KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~--kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
...++...-..++..-+.++.++..|...+..++. .|+...+......++.........+....+..++.-...++.+
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 695 (1111)
T PF13514_consen 616 AAEELRAARAELEALRARRAAARAALAAALAALGPAEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAE 695 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677778888888888888888877755 7777777777777777777778888888888888888888888
Q ss_pred hhhhhhhhHHHhHHHHHHHHHhhcccCCChHH
Q 025130 202 IDSLADKQDITNIGMYLLCNFVDGKKGRTTES 233 (257)
Q Consensus 202 i~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~ 233 (257)
+..++......-.-....|.-.+....-.|..
T Consensus 696 ~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~ 727 (1111)
T PF13514_consen 696 LQEAQEALEEWQEEWQEALAELGLPADASPEE 727 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 88877776666665555555444333434554
No 455
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=33.26 E-value=4.7e+02 Score=26.09 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHh-hhhcCCCeEEEeCCCC
Q 025130 55 TDAIKDQLNRLKFEC-QRASSGQIFVRNENSG 85 (257)
Q Consensus 55 ~d~L~aQV~~L~~El-~Lassr~iTVvn~~sG 85 (257)
.+.+.+|+.++++.+ +-...+.+.|+.+++.
T Consensus 312 ~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~ 343 (475)
T PLN03226 312 FKAYQKQVKANAAALANRLMSKGYKLVTGGTD 343 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 355677777777777 5333467888875543
No 456
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=33.16 E-value=2.7e+02 Score=22.73 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025130 164 NEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
.+..+.+++...+++........+++.
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~~~~~l~~ 105 (158)
T PF03938_consen 79 QKRQQELQQKEQELQQFQQQAQQQLQQ 105 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544443
No 457
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.16 E-value=1.3e+02 Score=28.98 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH-HHhhhhhhh
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM-IYCLDGKID 203 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~-V~~Le~Ki~ 203 (257)
.++-|.|+.-|+.|.|+=+.+ -.-.+++++++.| .+-..+++..|.+ |..|-.|+.
T Consensus 228 ~~lkeeia~Lkk~L~qkdq~i-----------leKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~ 284 (305)
T KOG3990|consen 228 QKLKEEIARLKKLLHQKDQLI-----------LEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKE 284 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHH-----------HhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555543332 2224557777776 4444567777666 666666554
No 458
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.08 E-value=4.2e+02 Score=24.91 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=52.2
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----hhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh-------hh
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ-----NLNDKVEKQNEISKDIRKNVEEACDDLFKVE-------HN 187 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~-----~vd~kld~~~eis~~i~~eV~~v~~d~~~i~-------~d 187 (257)
.++.-.+|+.-+.+|++.....|.++.+.|..==+ ..+..-....+....++.+..+++..+.... -+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 45556788999999999999999999877754211 1222233344455555666666666655442 24
Q ss_pred HHHHHHHHHhhhhhhhh
Q 025130 188 LKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ 204 (257)
+..++.-+..|+.+|..
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55555556666666554
No 459
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.05 E-value=1.9e+02 Score=28.47 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHH
Q 025130 167 SKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
.+.+++++.++...+..+..++.
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 75 VKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 460
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=33.04 E-value=3.4e+02 Score=23.87 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred ehhhhhHhhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHhhHHhHHH
Q 025130 91 LMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESV--------TEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 91 ~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqV--------s~sL~~tKkhLsqRI~~vd~kld~ 162 (257)
.++-.++-+++||.+.||. .++.+..|-..--+-+++- -+++..+|.+..+.-..++..+.+
T Consensus 6 ~i~~~~vG~~~G~~~~~~~----------~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~ 75 (201)
T PF12072_consen 6 AIVALIVGIGIGYLVRKKI----------NRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKE 75 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 163 QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 163 ~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
...=.....+.+..-...+.+=...++.-...+...+.+|..-...-+-...-+..+.+
T Consensus 76 ~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~ 134 (201)
T PF12072_consen 76 RRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIE 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=32.99 E-value=2.2e+02 Score=21.61 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=36.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
+..+|.+-.+.+.+..+|-..+...--....-|+.++..+..+|..+..+..+.+-...-+..|-+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666655555555555556666666666666665555555444444444433
No 462
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=32.97 E-value=3.6e+02 Score=24.06 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
....+.|.++|-.+.++.....+.-+....++..++.+.+.+..++.+.
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333333333344444444444444444433
No 463
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=32.89 E-value=1.7e+02 Score=20.31 Aligned_cols=39 Identities=36% Similarity=0.527 Sum_probs=22.1
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025130 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
--..+...+++|.++...|.+.|......+..-...+..
T Consensus 19 ~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 19 MFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666666555554444433
No 464
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=32.80 E-value=4e+02 Score=27.28 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHH-----HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 138 VTEALTVAKKHLTQRIQNLNDKVEKQ-----NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 138 Vs~sL~~tKkhLsqRI~~vd~kld~~-----~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.......+|.+|..-|..+.++|++. .+-.+.+++.+.+.++-+.. +|.+.+++....|+..+..+..++
T Consensus 521 ~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~--~~~~~i~~k~~~L~~~~~~~~~~~ 595 (627)
T PRK00290 521 KRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKG--EDKEAIKAKTEELTQASQKLGEAM 595 (627)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888888888888642 12233444445555554442 377788888888888888777654
No 465
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.69 E-value=1.3e+02 Score=33.06 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
.+++.=..++......+..||....+.++.+......+-++...+...+++....++.....+..+-.|+.+++..-|..
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse 888 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSE 888 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcch
Q ss_pred h
Q 025130 213 N 213 (257)
Q Consensus 213 n 213 (257)
+
T Consensus 889 ~ 889 (970)
T KOG0946|consen 889 T 889 (970)
T ss_pred H
No 466
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.60 E-value=2.7e+02 Score=25.85 Aligned_cols=40 Identities=13% Similarity=0.352 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
+||.+++++... ||..++|- ..|++|..+.....+++...
T Consensus 153 ~Ld~ls~ti~rl-k~~a~~~g---~EL~~Q~~llDdl~~e~d~t 192 (235)
T KOG3202|consen 153 GLDGLSATVQRL-KGMALAMG---EELEEQGRLLDDLDNEMDRT 192 (235)
T ss_pred HHHHHHHHHHHH-HHHHHHHh---HHHHHHHHHHHHHHHHHHHH
Confidence 456666666554 34444433 55666655555444444333
No 467
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=32.53 E-value=2.3e+02 Score=21.69 Aligned_cols=26 Identities=8% Similarity=0.262 Sum_probs=15.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025130 126 TAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKkhLsq 151 (257)
+-|..|...|.++...+..-++-..+
T Consensus 8 ~~v~~I~~~I~~i~~~v~~l~~l~~~ 33 (117)
T smart00503 8 EKVEEIRANIQKISQNVAELQKLHEE 33 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777766666544443333
No 468
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=32.50 E-value=3e+02 Score=24.79 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHH
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISK 168 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~ 168 (257)
.|..+...|.+|..+++.+++++.+.++
T Consensus 31 ~Lk~~~~~L~krq~~Le~kIe~e~~~Ak 58 (191)
T PTZ00446 31 KNREAIDALEKKQVQVEKKIKQLEIEAK 58 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888887777665
No 469
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=32.47 E-value=4.3e+02 Score=24.84 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=18.7
Q ss_pred cchHHHHHHHHHHHHHh-hhhcC
Q 025130 53 NFTDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~Lass 74 (257)
.+-.+|+.+++.|.+|| .++.+
T Consensus 105 ~dr~aia~Ei~~l~~~l~~~aNt 127 (317)
T PRK08027 105 DDRASLATDLQGLRDQLLNLANT 127 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 44568999999999999 88874
No 470
>PHA03332 membrane glycoprotein; Provisional
Probab=32.31 E-value=2.3e+02 Score=32.15 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhhHHHhhh----hHHHHHHHHHhhhhhh
Q 025130 166 ISKDIRKNVEEACDDLFKVEH----NLKDLQSMIYCLDGKI 202 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~----dv~~v~~~V~~Le~Ki 202 (257)
++...++.+.++.+-++...+ -+..+..-+..|..++
T Consensus 924 isatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ql 964 (1328)
T PHA03332 924 ISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQL 964 (1328)
T ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444443333 3334555555555553
No 471
>PRK09546 zntB zinc transporter; Reviewed
Probab=32.28 E-value=4e+02 Score=24.71 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=12.6
Q ss_pred HHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025130 175 EEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 175 ~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
.++.+.+.++-+|++..+.....|-...
T Consensus 225 ~Dv~d~~~~~~~~l~~~~~~~~~l~d~~ 252 (324)
T PRK09546 225 QDIADRLGRGLDDLDACIARTAVLADEI 252 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555554444443333
No 472
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=32.11 E-value=3.1e+02 Score=23.08 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHh-------HHHHHHHHHHHHHHHHHhhhhH-HHhhhhHHHHHHHHHhhhhhhhh
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDK-------VEKQNEISKDIRKNVEEACDDL-FKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~k-------ld~~~eis~~i~~eV~~v~~d~-~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.+.+.+|....+.+.+.+..+... ++........++.....++... .....+++.+=-.+..++.|+..
T Consensus 26 ~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~k 102 (136)
T PF04871_consen 26 SQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKK 102 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHH
Confidence 444445555444454444444442 2222222333333333333222 45677888888888888888874
No 473
>PRK01156 chromosome segregation protein; Provisional
Probab=32.04 E-value=3.8e+02 Score=28.40 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHhhhhhhhhh
Q 025130 184 VEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+..+++.+...+..|..++.++
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l 435 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRAL 435 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444433
No 474
>PHA03332 membrane glycoprotein; Provisional
Probab=32.02 E-value=8.1e+02 Score=28.21 Aligned_cols=51 Identities=12% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh----hhhHHHHHHHHHhhhhhhh
Q 025130 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKV----EHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i----~~dv~~v~~~V~~Le~Ki~ 203 (257)
|..+..+++..++-...+.+-+.++...+.+| ...|+.++-.|..||..+.
T Consensus 893 ia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN 947 (1328)
T PHA03332 893 TAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVN 947 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHH
Confidence 33344455555555555555555555555543 3455556656666665443
No 475
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=31.99 E-value=2.1e+02 Score=22.88 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 025130 159 KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 159 kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
|+|+...=.+.++.+|..+..|+...+.+++.-++--..=-.||| ||||
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD----N~~~ 73 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD----AQDY 73 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHH
No 476
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.98 E-value=5.6e+02 Score=26.39 Aligned_cols=83 Identities=17% Similarity=0.334 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
|=|-+-..+..+-+.|+.+-..=..-|++-. |+..-...+| ..|...++.+=.++..+.++...+...++..+..|.
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~-~L~~r~~~id--~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENE-RLQKREQSID--QQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhh
Q 025130 200 GKIDSL 205 (257)
Q Consensus 200 ~Ki~~i 205 (257)
.+++.+
T Consensus 137 ~~l~~~ 142 (472)
T TIGR03752 137 RRLAGV 142 (472)
T ss_pred HHHhhc
No 477
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.95 E-value=2.7e+02 Score=23.32 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH----HHHHHH
Q 025130 123 SMATAVSNLNKHLE--SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI----RKNVEE 176 (257)
Q Consensus 123 ~ms~Av~sv~kqLe--qVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i----~~eV~~ 176 (257)
++++...-+...-. ...+.+....+++..+|+.++.++.+..+....+ ++++++
T Consensus 58 sL~eI~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~ 117 (134)
T cd04779 58 SLAEIKDQLEEVQRSDKEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTK 117 (134)
T ss_pred CHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.88 E-value=2.5e+02 Score=21.99 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh-----HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK-----VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k-----ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
.+.....+.+.+-++.|......|.++|+.|-.. -+.-..-..+....++++..-+.+|+..++..-..++.-|.
T Consensus 10 ~~~~~~A~~~~~~~~~i~~~l~~l~s~~~~l~~~W~G~a~~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a~~~~~~d~ 89 (97)
T COG4842 10 EEMRATAKDYAGSSGEIQALLQDLASEIAKLQSAWEGDAAEAFQSEQQQWNQAATELNEALEQLADALRHAADAFEEADQ 89 (97)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 025130 201 KIDS 204 (257)
Q Consensus 201 Ki~~ 204 (257)
++..
T Consensus 90 ~~a~ 93 (97)
T COG4842 90 RVAQ 93 (97)
T ss_pred HHHh
No 479
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=31.79 E-value=43 Score=22.27 Aligned_cols=29 Identities=17% Similarity=0.494 Sum_probs=0.0
Q ss_pred eeeeeccCcchhHHHhHhhHHHHHHHHHH
Q 025130 105 YMWWKGLSFADLMYVTRKSMATAVSNLNK 133 (257)
Q Consensus 105 YmwWKGws~sDlMfVTkr~ms~Av~sv~k 133 (257)
++.|+|++-++--+++..++..+...|-+
T Consensus 21 lVkW~g~~~~~~tW~~~~~l~~~~~~v~~ 49 (55)
T smart00298 21 LVKWKGYSYSEDTWEPEENLLNCSKKLDN 49 (55)
T ss_pred EEEECCCCCccCceeeHHHHHHHHHHHHH
No 480
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=31.59 E-value=1.2e+02 Score=27.33 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh--------hhHHHHHHHHHhhhhhhhhhh
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE--------HNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~--------~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+|...+.|-.|+.|+.. +++.++-..||+++..+..|++.-+ .|++.+...+......+..++
T Consensus 38 lDElNs~IG~A~~~~~~---------~~i~~~L~~IQ~~LF~lG~dLat~~~~~~~i~~e~v~~LE~~id~y~~~l~~l~ 108 (184)
T COG2096 38 LDELNSFIGLARALLKD---------EDIRAILRRIQNDLFDLGADLATPEEKPLRITEEDVKRLEKRIDAYNAELPPLK 108 (184)
T ss_pred HHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHhhhhhcCCCccccccCHHHHHHHHHHHHHHHhcCCCcc
No 481
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=31.57 E-value=4.7e+02 Score=25.00 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+...-+..+|+.|-..+.+=.++|..-+++-..=|+++++|-........+++.....+.. +.++..|+.||..+
T Consensus 92 eelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-----~rv~~el~~K~~~~ 166 (268)
T PF11802_consen 92 EELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-----SRVFQELKTKIEKI 166 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----HHHHHHHHHHHHHH
Q ss_pred hhhhH
Q 025130 206 ADKQD 210 (257)
Q Consensus 206 e~kQd 210 (257)
+..+.
T Consensus 167 k~~~e 171 (268)
T PF11802_consen 167 KEYKE 171 (268)
T ss_pred HHHHH
No 482
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=31.43 E-value=1.4e+02 Score=22.07 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 117 MYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 117 MfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
||-.+..++-+|..+.--. +..-.++.--+.|||..|..+|.+...=.+..+.+....+
T Consensus 1 M~~k~~~la~~~~L~~~~~---~~~a~a~~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 1 MKIKKLALAVAILLASSAC---SASAQAAPLTIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred CcccHHHHHHHHHHHHHHH---HHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 483
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=31.38 E-value=4.6e+02 Score=26.51 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhhHHhHHH-----HHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025130 120 TRKSMATAVSNLN--KHLESVTEALTVAKKHLTQRIQNLNDKVEK-----QNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 120 Tkr~ms~Av~sv~--kqLeqVs~sL~~tKkhLsqRI~~vd~kld~-----~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
++..+..+..... ..-|........+|.+|..-|-.+.++|++ ..+-.+.+++.+.+.++=+. ..|...++
T Consensus 499 s~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~--~~d~~~i~ 576 (595)
T TIGR02350 499 SEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALK--GEDVEEIK 576 (595)
T ss_pred CHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHh--cCCHHHHH
Q ss_pred HHHHhhhhhhhhhhhhh
Q 025130 193 SMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 193 ~~V~~Le~Ki~~ie~kQ 209 (257)
...+.|+..++.++.++
T Consensus 577 ~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 577 AKTEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHHHHH
No 484
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=31.36 E-value=3.1e+02 Score=23.04 Aligned_cols=57 Identities=12% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
++|..-+..+-..+.+--+.-++.|-+.-.|+|.|-+.+-....-....+++|++++
T Consensus 11 ~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 11 GTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhcc
No 485
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=31.34 E-value=2.1e+02 Score=21.03 Aligned_cols=62 Identities=8% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
.++..-|+.+..++++...+...+-.....=...-.++..=...++.....+..+|..|+..
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.30 E-value=5e+02 Score=28.90 Aligned_cols=102 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred CcchhHHHhHhhHHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025130 112 SFADLMYVTRKSMATAVSNLNKHLESV----------TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 112 s~sDlMfVTkr~ms~Av~sv~kqLeqV----------s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
++-|+|..++..+..-....-..|.++ .-....+-+|-++|...|.+...+-.+|.+.|+|++.++.-..
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHH
Q 025130 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
+.--.|++.++.-...|-.-+. +|..+.+-.|
T Consensus 559 esk~~eidi~n~qlkelk~~~~----~q~lake~~y 590 (1118)
T KOG1029|consen 559 ESKLNEIDIFNNQLKELKEDVN----SQQLAKEELY 590 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH----HHHHHHHHHH
No 487
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=31.25 E-value=3.5e+02 Score=23.44 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
.|+.+.+-+..+.+.|+.+.+++..--.++.++|...|+.+|+...-...---++...+.-...--..+-.+-.++..||
T Consensus 21 ~~~el~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~~~I~~~l~~~l~~~~~~~~d~~~~~~~~~i~~~lE 100 (236)
T PRK11115 21 IRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMMEVAIDEACVRIIAKRQPTASDLRLVMAIIKTIADLE 100 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHH
No 488
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=31.23 E-value=1.3e+02 Score=26.24 Aligned_cols=65 Identities=23% Similarity=0.427 Sum_probs=0.0
Q ss_pred cCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 025130 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (257)
Q Consensus 111 ws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (257)
+.++|.+|-.-+.+.+++..+-..+. +.+......++|.++++.+..+|+.+.+.-..|.+....
T Consensus 25 i~~~~~v~L~P~~v~~~v~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~ 89 (180)
T PF04678_consen 25 IALSDSVYLRPKQVKEAVHRLLPLLN-VEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAEK 89 (180)
T ss_pred EEECCeeeECHHHHHHHHHHHhcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=31.22 E-value=6.5e+02 Score=26.54 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred HhHhhHHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 025130 119 VTRKSMATAVSNLNKHLESV----------TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqV----------s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (257)
++=|.+.+-..++.+.+++| |+.++.+-..+..-+..+.+++++..|--.+++++=.++|++++++..-+
T Consensus 347 ~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l 426 (570)
T COG4477 347 GSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKL 426 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 025130 189 KDLQSMIYC 197 (257)
Q Consensus 189 ~~v~~~V~~ 197 (257)
..+.+.+..
T Consensus 427 ~eikR~mek 435 (570)
T COG4477 427 HEIKRYMEK 435 (570)
T ss_pred HHHHHHHHH
No 490
>PF13166 AAA_13: AAA domain
Probab=31.07 E-value=5.9e+02 Score=26.00 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQ-RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsq-RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
..+...+....+..++....+..+++.+.. .+......++...+-.+..+.++......+..+...+..+...+..|+.
T Consensus 373 ~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~ 452 (712)
T PF13166_consen 373 DELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEA 452 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhHHHhHHHHHH
Q 025130 201 KIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 201 Ki~~ie~kQd~tn~GV~~L 219 (257)
++...+.-.+.-|.-+..+
T Consensus 453 ~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 453 QLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHhhhHHHHHHHHHHHHHh
No 491
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=31.07 E-value=2e+02 Score=24.48 Aligned_cols=61 Identities=16% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHhHHHHHHHH--HHHHHHHHHhhhhHHHhhhhHHH---------HHHHHHhhhhhhhhhhhh
Q 025130 148 HLTQRIQNLNDKVEKQNEIS--KDIRKNVEEACDDLFKVEHNLKD---------LQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis--~~i~~eV~~v~~d~~~i~~dv~~---------v~~~V~~Le~Ki~~ie~k 208 (257)
++-..||.+...+--..... ..+++.+..++..+-.++.++.. -...|..||..|+.++..
T Consensus 27 e~~G~lDEl~a~igla~~~~~~~~~~~~L~~iq~~L~~l~~~la~~~~~~~~~i~~~~v~~Le~~i~~~~~~ 98 (163)
T PF01923_consen 27 EAYGTLDELNAFIGLARSEIKEEELREILERIQNELFDLGAELATPEEDEEPEITEEDVQELEEEIDEYSEE 98 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTHCTTHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCS--HHHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHHHHHHHHHhc
No 492
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=31.01 E-value=38 Score=38.44 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred eeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025130 105 YMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 105 YmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
++-|||||-=.-=|.|.-+|...-....|.|++.--.....++.+. +++-..+
T Consensus 229 lIKWkg~SyLHctWet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r---------------------------~E~~~~~ 281 (1373)
T KOG0384|consen 229 LIKWKGWSYLHCTWETESELLEMNVRGLKKVDNFKKKVIEEDRWRR---------------------------QEREEDL 281 (1373)
T ss_pred heeeccccceeccccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---------------------------hhhhhhh
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhh
Q 025130 185 EHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
..|...|.++|..--.+- ..|||.|.+
T Consensus 282 ~~dy~~VdRIia~~~~~d-------------~eYLvKW~~ 308 (1373)
T KOG0384|consen 282 NKDYVIVDRIIAEQTSKD-------------PEYLVKWRG 308 (1373)
T ss_pred hhhhhhhhhhhhcccCCC-------------ceeEEEecC
No 493
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.98 E-value=4e+02 Score=28.24 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=0.0
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
+.|..+-..-+.+..++.++++.|...++.+.++|+..-.++.+..+=+..+-+++..++..=..-.+=+++=.+.+..|
T Consensus 127 aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eL 206 (676)
T PRK05683 127 AARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQL 206 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHH
Q ss_pred hhhhh
Q 025130 199 DGKID 203 (257)
Q Consensus 199 e~Ki~ 203 (257)
-..++
T Consensus 207 S~~v~ 211 (676)
T PRK05683 207 NELVG 211 (676)
T ss_pred HhhcC
No 494
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.97 E-value=2.2e+02 Score=28.70 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH----HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK----NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~----eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+|...+|.+..+++.+-.+-++...-.+.... +..++..++..+..+++.+....+.++.++..+
T Consensus 33 ~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 33 ELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 495
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=30.87 E-value=4.8e+02 Score=24.91 Aligned_cols=85 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHH------HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 135 LESVTEALTVAKKHLTQ------RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsq------RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
|.+.-+.+..++++..+ +.+.-++++....+=.+...+++......+..+..-+..++..+..||.|-.+|+..
T Consensus 171 LR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~ 250 (269)
T PF05278_consen 171 LRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKT 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHhHHHHHH
Q 025130 209 QDITNIGMYLL 219 (257)
Q Consensus 209 Qd~tn~GV~~L 219 (257)
-.++-..|...
T Consensus 251 ~~~~~sKV~kf 261 (269)
T PF05278_consen 251 IKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHh
No 496
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=30.85 E-value=3.9e+02 Score=23.83 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH-HHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD-IRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~-i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
|.|---||.|+++...+++.+..++..=..+ -|++-+.++.+--+...++... -.++...+.+.+...-..+.+|+.
T Consensus 36 e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~--~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~ 113 (224)
T cd07623 36 ESLVNHRKELALNTGSFAKSAAMLSNCEEHT--SLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKD 113 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 025130 194 MIYC 197 (257)
Q Consensus 194 ~V~~ 197 (257)
++..
T Consensus 114 ~f~~ 117 (224)
T cd07623 114 VFHE 117 (224)
T ss_pred HHHH
No 497
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=30.79 E-value=4.6e+02 Score=24.71 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHH
Q 025130 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYL 218 (257)
Q Consensus 139 s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (257)
+++|.+-...|.+-+..++.++. +++....+-..+..+.+..+..++.++..-+..|...|.++...-.........
T Consensus 9 l~~L~~Ep~~L~~~~~~l~~ql~---~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~ 85 (338)
T PF04124_consen 9 LESLFSEPQSLSEEIASLDAQLQ---SLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQK 85 (338)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 025130 219 LCN 221 (257)
Q Consensus 219 Lc~ 221 (257)
+.+
T Consensus 86 ~~~ 88 (338)
T PF04124_consen 86 ISE 88 (338)
T ss_pred HHH
No 498
>PLN03223 Polycystin cation channel protein; Provisional
Probab=30.77 E-value=2.7e+02 Score=32.58 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHhHhhHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH---HHHhhhhHHHhhhhHHHH
Q 025130 117 MYVTRKSMA--TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN---VEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 117 MfVTkr~ms--~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e---V~~v~~d~~~i~~dv~~v 191 (257)
|=+.||.|. ||-+.++.-|+||. .|+-+..-|...|+.+..++|-++.+.+.=-.+ .+-+......|..-=..+
T Consensus 764 ~~~~~r~l~~~~~~~~l~~~~~~v~-~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~~~~~i~~g~~d~~~~~~~~ 842 (1634)
T PLN03223 764 TRANRRRLQQTNAAATLTNILTQVG-TLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNSLETLINAGFTDIKAGQAAL 842 (1634)
T ss_pred chhhhhhhhhcchHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHhchhHHHhHHHHH
Q ss_pred HHHHHhhhhhhhhhhhhhHHHhHHH
Q 025130 192 QSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 192 ~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
|.||++|-+||+-+....
T Consensus 843 -------~~~~~~il~kq~~al~~~ 860 (1634)
T PLN03223 843 -------EAKLDEILGKQQQALAAA 860 (1634)
T ss_pred -------HhHHHHHHHHHHHHHHHH
No 499
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=30.72 E-value=4e+02 Score=24.59 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred chhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 114 ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 114 sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
.|-|-..||+|+++-..+++.+..++.+-...-.+.-.++..+-.|+. +--..+-.+|...+.+.+...-.+++.++.
T Consensus 46 ~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L~~~l~~laev~eki~--~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kd 123 (218)
T cd07662 46 SDRMTRSHKSAADDYNRIGSSLYTLGTQDSTDICKFFLKVSELFDKTR--KIEARVAADEDLKLSDLLKYYLRESQAAKD 123 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH--HHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 025130 194 MIY 196 (257)
Q Consensus 194 ~V~ 196 (257)
+..
T Consensus 124 ll~ 126 (218)
T cd07662 124 LLY 126 (218)
T ss_pred HHH
No 500
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=30.49 E-value=1.5e+02 Score=26.04 Aligned_cols=62 Identities=15% Similarity=0.334 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
++.+.+.....-+.+..+++.+++.+ ...-....-+++..++.++..+..-+...+.++..+
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~--~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~ 177 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDEL--DDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRL 177 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--THTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--ccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Done!