Query 025130
Match_columns 257
No_of_seqs 67 out of 69
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:19:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba2_A D12_ORF131, hypothetica 94.3 0.078 2.7E-06 41.0 5.7 77 118-206 8-84 (85)
2 1fxk_C Protein (prefoldin); ar 93.8 0.61 2.1E-05 36.8 10.2 43 142-184 86-128 (133)
3 2zdi_C Prefoldin subunit alpha 93.8 0.94 3.2E-05 36.8 11.5 117 30-183 6-137 (151)
4 2no2_A HIP-I, huntingtin-inter 93.1 1.4 4.9E-05 34.8 11.2 79 129-207 11-96 (107)
5 1m1j_B Fibrinogen beta chain; 91.1 2.8 9.7E-05 40.7 12.9 97 113-209 87-191 (464)
6 3g67_A Methyl-accepting chemot 90.5 3.1 0.0001 36.2 11.4 39 124-162 5-43 (213)
7 3ghg_A Fibrinogen alpha chain; 89.7 4.4 0.00015 40.3 12.9 100 113-212 51-157 (562)
8 1deq_A Fibrinogen (alpha chain 89.7 3.5 0.00012 39.4 11.9 98 113-210 54-158 (390)
9 3tnu_B Keratin, type II cytosk 89.6 0.56 1.9E-05 37.5 5.5 43 165-207 29-71 (129)
10 3g67_A Methyl-accepting chemot 89.4 7.2 0.00025 33.8 12.8 75 130-204 4-78 (213)
11 3okq_A BUD site selection prot 89.2 3.5 0.00012 34.4 10.2 82 140-221 10-111 (141)
12 3mq9_A Bone marrow stromal ant 88.9 6.6 0.00023 36.2 13.1 80 123-203 356-435 (471)
13 3na7_A HP0958; flagellar bioge 88.6 2.9 9.9E-05 36.6 9.9 18 186-203 97-114 (256)
14 3tnu_A Keratin, type I cytoske 88.5 0.52 1.8E-05 37.8 4.7 64 138-204 29-95 (131)
15 3trt_A Vimentin; cytoskeleton, 87.0 6.8 0.00023 28.2 9.7 69 123-191 6-75 (77)
16 1m1j_A Fibrinogen alpha subuni 85.9 11 0.00039 36.9 13.0 104 109-212 48-158 (491)
17 3oja_A Leucine-rich immune mol 85.5 6.2 0.00021 36.6 10.8 66 156-221 412-477 (487)
18 2yo3_A General control protein 85.1 2.4 8.2E-05 38.7 7.5 58 134-191 199-256 (268)
19 3hnw_A Uncharacterized protein 84.1 11 0.00039 30.7 10.5 64 148-211 72-135 (138)
20 2akf_A Coronin-1A; coiled coil 83.8 0.83 2.9E-05 29.1 2.8 28 182-209 2-29 (32)
21 3o0z_A RHO-associated protein 83.7 17 0.00059 31.0 11.8 79 121-206 57-138 (168)
22 1deq_A Fibrinogen (alpha chain 83.5 6.2 0.00021 37.7 9.8 66 125-190 94-159 (390)
23 1c1g_A Tropomyosin; contractIl 83.3 16 0.00055 29.3 13.5 36 171-206 68-103 (284)
24 4dnd_A Syntaxin-10, SYN10; str 83.1 3.6 0.00012 33.4 7.0 27 120-146 68-94 (130)
25 3mq9_A Bone marrow stromal ant 82.8 14 0.00049 34.0 11.9 42 122-163 369-416 (471)
26 3oja_B Anopheles plasmodium-re 82.3 13 0.00046 34.9 11.7 37 121-157 458-494 (597)
27 2xzr_A Immunoglobulin-binding 82.2 17 0.00059 28.9 11.3 72 123-194 31-105 (114)
28 3a7p_A Autophagy protein 16; c 82.2 21 0.00072 30.1 11.6 69 127-210 59-128 (152)
29 2jee_A YIIU; FTSZ, septum, coi 82.0 12 0.00042 28.4 9.2 67 153-219 8-74 (81)
30 3cvf_A Homer-3, homer protein 81.9 3.2 0.00011 31.4 5.9 27 148-174 24-50 (79)
31 2qyw_A Vesicle transport throu 81.9 6.1 0.00021 30.5 7.7 62 114-178 14-76 (102)
32 3onj_A T-snare VTI1; helix, HA 81.7 6.8 0.00023 29.9 7.8 53 122-177 8-60 (97)
33 3na7_A HP0958; flagellar bioge 81.6 10 0.00035 33.1 9.9 67 140-206 21-87 (256)
34 1gl2_D Syntaxin 8, vesicle tra 81.5 6.6 0.00023 27.5 7.2 52 151-202 9-60 (65)
35 3htk_A Structural maintenance 80.5 7.6 0.00026 26.6 7.1 46 156-201 10-55 (60)
36 1ic2_A Tropomyosin alpha chain 79.6 16 0.00054 26.9 9.0 54 150-203 19-72 (81)
37 1m1j_B Fibrinogen beta chain; 78.3 26 0.00089 34.0 12.4 18 146-163 95-112 (464)
38 3c9i_A Tail needle protein GP2 78.0 8 0.00027 34.5 8.0 97 111-208 36-141 (242)
39 1n7s_D SNAP-25A; neuronal snar 77.5 16 0.00054 25.6 8.4 48 148-195 7-54 (66)
40 4aj5_A SKA1, spindle and kinet 77.4 23 0.0008 27.5 9.7 46 176-225 34-79 (91)
41 3ghg_A Fibrinogen alpha chain; 77.3 11 0.00037 37.6 9.4 74 138-211 51-128 (562)
42 3gwk_C SAG1039, putative uncha 77.2 18 0.00062 26.1 11.0 75 129-203 14-93 (98)
43 2l5g_B Putative uncharacterize 76.8 2.4 8.3E-05 28.8 3.4 22 145-166 3-24 (42)
44 3tnu_B Keratin, type II cytosk 76.6 10 0.00035 30.0 7.7 72 131-205 20-94 (129)
45 4abx_A DNA repair protein RECN 76.0 9.7 0.00033 31.4 7.7 46 112-157 67-118 (175)
46 3u59_A Tropomyosin beta chain; 75.5 25 0.00084 26.8 11.2 73 147-219 19-91 (101)
47 1sfc_D Protein (SNAP-25B), pro 74.9 22 0.00074 26.5 8.7 42 150-191 28-69 (87)
48 2nps_D Syntaxin-6; vesicle fus 74.7 14 0.00047 27.2 7.5 40 182-221 36-75 (82)
49 3htk_A Structural maintenance 74.4 18 0.00061 24.7 7.8 43 135-177 10-52 (60)
50 3m0a_A TNF receptor-associated 74.3 20 0.00067 25.1 8.0 58 149-206 3-60 (66)
51 3u1c_A Tropomyosin alpha-1 cha 74.2 27 0.00093 26.7 11.3 57 150-206 22-78 (101)
52 3tnu_A Keratin, type I cytoske 74.2 10 0.00036 30.1 7.2 69 147-215 13-81 (131)
53 1m1j_C Fibrinogen gamma chain; 73.5 35 0.0012 32.5 11.7 92 113-205 25-124 (409)
54 2w83_C C-JUN-amino-terminal ki 73.4 23 0.00078 26.8 8.3 65 122-207 5-72 (77)
55 3zx6_A HAMP, methyl-accepting 73.3 52 0.0018 29.5 14.0 14 56-69 37-50 (341)
56 2jee_A YIIU; FTSZ, septum, coi 73.3 28 0.00096 26.4 9.7 54 152-205 28-81 (81)
57 3efg_A Protein SLYX homolog; x 73.1 8.4 0.00029 28.7 5.9 54 147-207 10-63 (78)
58 1vcs_A Vesicle transport throu 73.0 5 0.00017 30.9 4.8 69 122-193 12-88 (102)
59 1l8d_A DNA double-strand break 72.5 28 0.00097 26.2 10.4 35 128-162 5-42 (112)
60 3zbh_A ESXA; unknown function, 72.3 23 0.0008 25.1 11.5 28 135-162 14-41 (99)
61 1m1j_A Fibrinogen alpha subuni 71.6 32 0.0011 33.7 11.1 66 125-190 92-157 (491)
62 2xdj_A Uncharacterized protein 70.9 19 0.00066 27.1 7.6 25 170-194 32-56 (83)
63 3ghg_C Fibrinogen gamma chain; 70.7 42 0.0014 32.1 11.6 96 113-208 25-127 (411)
64 2dfs_A Myosin-5A; myosin-V, in 70.1 43 0.0015 35.4 12.5 17 121-137 923-939 (1080)
65 3cvf_A Homer-3, homer protein 68.8 30 0.001 26.1 8.2 62 143-207 5-66 (79)
66 4ioe_A Secreted protein ESXB; 68.6 28 0.00097 24.6 10.9 30 127-156 13-42 (93)
67 4ioe_A Secreted protein ESXB; 68.6 28 0.00097 24.6 9.5 31 133-163 12-42 (93)
68 1t3j_A Mitofusin 1; coiled coi 68.6 23 0.00078 27.7 7.7 19 144-162 47-65 (96)
69 3swy_A Cyclic nucleotide-gated 67.0 12 0.0004 25.7 5.1 36 124-159 10-45 (46)
70 1ic2_A Tropomyosin alpha chain 67.0 35 0.0012 25.0 9.9 65 149-213 4-68 (81)
71 1sfc_D Protein (SNAP-25B), pro 66.1 29 0.001 25.8 7.7 46 173-218 37-82 (87)
72 4h22_A Leucine-rich repeat fli 65.6 36 0.0012 27.0 8.4 58 146-203 25-82 (103)
73 2q6q_A Spindle POLE BODY compo 64.1 42 0.0014 25.1 7.9 58 146-203 5-62 (74)
74 3swf_A CGMP-gated cation chann 64.1 24 0.00081 26.5 6.7 39 124-162 12-50 (74)
75 3ci9_A Heat shock factor-bindi 63.3 18 0.00062 24.9 5.5 40 124-163 4-43 (48)
76 3zx6_A HAMP, methyl-accepting 63.1 85 0.0029 28.1 14.7 13 61-73 7-20 (341)
77 2v71_A Nuclear distribution pr 62.8 75 0.0026 27.4 13.9 101 119-219 28-135 (189)
78 2nps_D Syntaxin-6; vesicle fus 61.6 22 0.00076 26.0 6.2 57 151-207 19-75 (82)
79 4dnd_A Syntaxin-10, SYN10; str 60.6 64 0.0022 25.9 10.2 93 107-206 19-125 (130)
80 3vkg_A Dynein heavy chain, cyt 60.6 1.1E+02 0.0037 36.5 14.2 62 122-183 2010-2074(3245)
81 1wle_A Seryl-tRNA synthetase; 60.3 39 0.0013 32.8 9.3 29 141-172 74-102 (501)
82 3fav_B ESAT-6, 6 kDa early sec 59.8 44 0.0015 23.8 7.8 28 135-162 10-37 (94)
83 1gl2_D Syntaxin 8, vesicle tra 59.0 23 0.0008 24.6 5.7 43 174-216 18-60 (65)
84 2zqm_A Prefoldin beta subunit 58.9 29 0.00099 26.1 6.6 15 55-69 22-36 (117)
85 4i0x_B ESAT-6-like protein MAB 58.8 52 0.0018 24.3 9.7 34 133-166 14-47 (103)
86 3zbh_A ESXA; unknown function, 58.7 45 0.0016 23.6 10.5 77 126-202 12-93 (99)
87 1jcd_A Major outer membrane li 58.6 33 0.0011 23.9 6.3 13 149-161 9-21 (52)
88 2b9c_A Striated-muscle alpha t 58.3 72 0.0024 26.2 9.3 69 151-219 52-120 (147)
89 3pwx_A Putative flagellar HOOK 57.9 92 0.0031 26.8 13.2 22 53-74 69-91 (239)
90 2bez_C E2 glycoprotein; coiled 57.7 59 0.002 24.5 8.7 64 123-207 13-76 (77)
91 2v71_A Nuclear distribution pr 57.2 94 0.0032 26.8 12.2 106 122-227 20-136 (189)
92 3hd7_B Syntaxin-1A; membrane p 57.2 20 0.0007 27.7 5.6 66 153-218 23-88 (109)
93 3s84_A Apolipoprotein A-IV; fo 56.7 50 0.0017 29.4 8.8 86 121-206 164-262 (273)
94 3hnw_A Uncharacterized protein 56.5 78 0.0027 25.6 9.6 54 150-203 81-134 (138)
95 3v86_A De novo design helix; c 56.4 12 0.00042 22.8 3.2 23 169-191 4-26 (27)
96 1l4a_D S-SNAP25 fusion protein 56.4 50 0.0017 24.7 7.4 31 186-216 51-81 (87)
97 2ch7_A Methyl-accepting chemot 56.1 94 0.0032 26.4 14.4 24 179-202 100-123 (309)
98 3cve_A Homer protein homolog 1 56.1 59 0.002 24.1 8.2 46 148-193 18-63 (72)
99 2pnv_A Small conductance calci 56.0 21 0.00071 24.1 4.7 30 137-166 9-38 (43)
100 1i84_S Smooth muscle myosin he 55.9 28 0.00094 36.8 7.9 10 55-64 697-706 (1184)
101 3nmd_A CGMP dependent protein 55.2 43 0.0015 24.9 6.8 46 128-174 15-63 (72)
102 4fla_A Regulation of nuclear P 54.7 90 0.0031 25.7 10.3 69 136-204 71-146 (152)
103 2l3l_A Tubulin-specific chaper 54.5 76 0.0026 24.9 8.7 72 133-206 31-104 (111)
104 3gwk_C SAG1039, putative uncha 54.5 56 0.0019 23.3 10.0 32 133-164 11-42 (98)
105 3a7p_A Autophagy protein 16; c 54.0 52 0.0018 27.7 7.8 20 188-207 98-117 (152)
106 1m1j_C Fibrinogen gamma chain; 53.6 1.5E+02 0.0052 28.1 12.1 25 183-207 88-112 (409)
107 1ses_A Seryl-tRNA synthetase; 52.5 59 0.002 30.5 8.9 57 142-201 33-93 (421)
108 3zcc_A HAMP, osmolarity sensor 52.2 55 0.0019 22.5 8.6 20 165-184 66-85 (114)
109 3gp4_A Transcriptional regulat 52.1 87 0.003 24.8 9.2 30 146-175 83-112 (142)
110 3fx7_A Putative uncharacterize 52.0 81 0.0028 24.5 8.7 73 128-200 11-84 (94)
111 2p22_A Suppressor protein STP2 52.0 72 0.0024 27.1 8.5 33 203-235 118-150 (174)
112 2dq0_A Seryl-tRNA synthetase; 51.3 65 0.0022 30.6 9.1 62 142-207 36-97 (455)
113 3fav_A ESAT-6-like protein ESX 51.3 67 0.0023 23.3 8.8 68 134-201 11-90 (101)
114 3kkj_A Amine oxidase, flavin-c 51.2 2.1 7.3E-05 32.4 -1.0 13 13-25 5-17 (336)
115 1j1d_B Troponin T, TNT; THIN f 51.0 49 0.0017 26.0 6.9 26 176-202 67-92 (106)
116 1jcd_A Major outer membrane li 50.8 46 0.0016 23.2 5.9 27 152-178 5-31 (52)
117 3gp4_A Transcriptional regulat 50.8 51 0.0018 26.2 7.2 10 107-116 56-65 (142)
118 2v66_B Nuclear distribution pr 50.3 94 0.0032 24.7 10.2 41 123-163 7-47 (111)
119 3qne_A Seryl-tRNA synthetase, 50.3 36 0.0012 33.1 7.2 63 142-208 38-100 (485)
120 2xdj_A Uncharacterized protein 49.5 67 0.0023 24.1 7.1 53 150-209 5-57 (83)
121 3u59_A Tropomyosin beta chain; 49.3 83 0.0028 23.8 11.9 53 147-199 47-99 (101)
122 2nrj_A HBL B protein; enteroto 49.1 1.6E+02 0.0054 26.9 12.0 34 145-178 117-150 (346)
123 1kmi_Z CHEZ, chemotaxis protei 48.0 97 0.0033 26.7 9.0 103 122-224 26-140 (214)
124 1fxk_A Prefoldin; archaeal pro 47.9 49 0.0017 24.4 6.2 15 55-69 17-31 (107)
125 1n7s_D SNAP-25A; neuronal snar 47.8 67 0.0023 22.3 7.5 44 174-217 19-62 (66)
126 1mqs_A SLY1 protein, SLY1P; SM 47.7 1.8E+02 0.0061 28.6 11.9 68 114-181 329-431 (671)
127 2vs0_A Virulence factor ESXA; 47.0 72 0.0025 22.4 10.2 33 169-201 57-89 (97)
128 3hd7_A Vesicle-associated memb 47.0 88 0.003 23.4 9.7 23 134-156 6-28 (91)
129 3m0d_C TNF receptor-associated 46.7 74 0.0025 22.5 7.3 34 173-206 28-61 (65)
130 3ol1_A Vimentin; structural ge 46.6 1E+02 0.0035 24.1 11.2 69 143-211 33-101 (119)
131 1wyy_A E2 glycoprotein; membra 46.4 1.2E+02 0.0041 25.4 8.8 29 182-210 64-92 (149)
132 3ghg_B Fibrinogen beta chain; 45.8 1.3E+02 0.0046 29.2 10.3 95 113-207 82-184 (461)
133 1fzc_A Fibrin; blood coagulati 45.8 23 0.00078 27.3 4.0 42 147-188 3-44 (87)
134 3o0z_A RHO-associated protein 44.6 1.5E+02 0.005 25.2 11.8 70 138-207 56-132 (168)
135 3ghg_C Fibrinogen gamma chain; 44.6 2.2E+02 0.0074 27.2 12.4 86 138-223 25-128 (411)
136 2zqm_A Prefoldin beta subunit 44.6 77 0.0026 23.6 7.0 13 150-162 83-95 (117)
137 3u1c_A Tropomyosin alpha-1 cha 44.4 1E+02 0.0035 23.4 11.4 34 171-204 29-62 (101)
138 2wrg_I Hemagglutinin HA2 chain 44.3 25 0.00087 31.1 4.6 78 119-196 36-123 (222)
139 2c5k_T Syntaxin TLG1, T-snare 44.0 71 0.0024 24.3 6.7 24 184-207 66-89 (95)
140 3vkg_A Dynein heavy chain, cyt 44.0 1.3E+02 0.0043 36.0 11.4 15 30-44 1684-1698(3245)
141 1mqm_B Hemagglutinin HA2 chain 43.6 9.3 0.00032 33.8 1.8 78 119-196 36-123 (221)
142 1wt6_A Myotonin-protein kinase 42.4 1.1E+02 0.0038 23.2 7.5 20 170-189 29-48 (81)
143 1jsd_B Haemagglutinin (HA2 cha 42.4 36 0.0012 29.1 5.1 46 119-164 36-88 (176)
144 1l4a_D S-SNAP25 fusion protein 42.3 73 0.0025 23.7 6.4 59 146-204 25-83 (87)
145 1x8y_A Lamin A/C; structural p 42.2 1E+02 0.0035 22.8 8.1 63 134-203 11-73 (86)
146 1fxk_A Prefoldin; archaeal pro 42.1 69 0.0024 23.6 6.3 16 122-137 61-76 (107)
147 4etp_A Kinesin-like protein KA 41.6 66 0.0023 30.1 7.4 12 189-200 48-59 (403)
148 3ci9_A Heat shock factor-bindi 41.6 47 0.0016 22.8 4.7 37 124-160 7-47 (48)
149 1lwu_A Fibrinogen alpha-1 chai 41.5 49 0.0017 26.8 5.5 42 147-188 25-66 (119)
150 2dq3_A Seryl-tRNA synthetase; 41.3 58 0.002 30.6 7.0 63 142-208 35-97 (425)
151 1aq5_A Matrilin-1, CMP, cartil 41.2 62 0.0021 22.3 5.2 10 149-158 35-44 (47)
152 3zrx_A AF1503 protein, osmolar 41.2 82 0.0028 21.4 7.1 14 60-73 9-23 (115)
153 3c9i_A Tail needle protein GP2 41.1 1.2E+02 0.0041 27.0 8.4 55 153-207 93-147 (242)
154 2pjw_V Vacuolar protein sortin 41.1 1.2E+02 0.0041 23.2 7.5 56 133-205 33-88 (91)
155 1t3j_A Mitofusin 1; coiled coi 41.0 1.3E+02 0.0043 23.5 7.9 32 124-155 34-65 (96)
156 1lwu_C Fibrinogen gamma chain; 40.9 53 0.0018 30.3 6.5 19 185-203 39-57 (323)
157 3mov_A Lamin-B1; LMNB1, B-type 40.9 1.2E+02 0.004 23.1 7.9 70 127-203 13-82 (95)
158 2rft_B Influenza B hemagglutin 40.6 17 0.00058 31.1 2.8 46 119-164 36-88 (176)
159 1x79_B RAB GTPase binding effe 40.6 1.4E+02 0.0047 23.8 9.7 65 134-198 7-71 (112)
160 2a01_A Apolipoprotein A-I; fou 40.1 30 0.001 30.0 4.5 15 146-160 149-163 (243)
161 3tul_A Cell invasion protein S 39.3 64 0.0022 27.2 6.1 23 185-207 68-90 (158)
162 1epu_A S-SEC1; parallel beta-s 39.2 1.3E+02 0.0044 28.8 9.2 69 113-181 280-370 (591)
163 2nps_B Syntaxin 13, vesicle-as 38.7 73 0.0025 22.5 5.7 52 172-223 6-61 (71)
164 3kpe_A Fusion glycoprotein F0; 38.6 94 0.0032 21.7 5.9 39 158-196 4-42 (51)
165 2c5k_T Syntaxin TLG1, T-snare 38.3 53 0.0018 25.0 5.2 29 120-148 37-65 (95)
166 1xwj_B Talin, metavinculin; ce 38.3 19 0.00066 21.5 2.1 24 120-143 2-25 (26)
167 3u06_A Protein claret segregat 37.6 86 0.0029 29.5 7.5 55 141-202 7-61 (412)
168 3lss_A Seryl-tRNA synthetase; 37.5 1.1E+02 0.0039 29.5 8.5 20 142-161 42-61 (484)
169 2bsg_A Fibritin; viral protein 37.5 47 0.0016 32.6 5.8 84 122-207 43-129 (487)
170 3f6n_A Virion-associated prote 37.4 74 0.0025 26.0 6.0 31 160-190 4-34 (129)
171 3e7k_A TRPM7 channel; coiled-c 36.8 1.1E+02 0.0038 21.7 7.5 45 125-173 8-52 (56)
172 3ku3_B Hemagglutinin HA2 chain 36.7 26 0.0009 30.0 3.4 77 119-195 36-122 (174)
173 3trt_A Vimentin; cytoskeleton, 36.6 1.1E+02 0.0038 21.6 8.7 37 170-206 40-76 (77)
174 3c8u_A Fructokinase; YP_612366 35.9 37 0.0013 27.4 4.2 52 62-115 8-65 (208)
175 3edv_A Spectrin beta chain, br 35.9 2E+02 0.0069 24.4 9.2 58 146-204 187-244 (323)
176 4ack_A TSSL; protein transport 35.8 64 0.0022 27.9 5.7 64 160-224 7-70 (185)
177 1wle_A Seryl-tRNA synthetase; 35.4 2.8E+02 0.0096 26.8 10.9 11 143-153 90-100 (501)
178 3q0x_A Centriole protein; cent 35.3 1.3E+02 0.0043 26.6 7.8 35 144-178 164-198 (228)
179 1q08_A Zn(II)-responsive regul 35.3 90 0.0031 22.5 5.9 59 149-207 8-74 (99)
180 3b5n_D Protein transport prote 35.2 1.2E+02 0.004 21.5 7.6 23 186-208 31-53 (64)
181 2bez_C E2 glycoprotein; coiled 35.1 77 0.0026 23.9 5.4 22 124-145 21-42 (77)
182 3h6p_C ESAT-6-like protein ESX 35.1 64 0.0022 23.2 5.0 35 167-201 55-89 (96)
183 3rkg_A Magnesium transporter M 35.1 1.3E+02 0.0043 26.9 7.8 39 124-164 132-170 (261)
184 3m5g_B Hemagglutinin; influenz 35.0 14 0.00048 31.8 1.5 77 119-195 36-122 (182)
185 1lwu_C Fibrinogen gamma chain; 34.9 44 0.0015 30.8 4.9 18 189-206 36-53 (323)
186 3swk_A Vimentin; cytoskeleton, 34.9 1.4E+02 0.0048 22.2 10.9 68 143-210 13-80 (86)
187 1d7m_A Cortexillin I; coiled-c 34.6 1.6E+02 0.0056 23.0 7.9 11 195-205 69-79 (101)
188 3m91_A Proteasome-associated A 34.6 1.1E+02 0.0038 21.1 5.8 35 148-182 13-47 (51)
189 2i0m_A Phosphate transport sys 34.4 1.6E+02 0.0054 23.8 7.8 81 120-200 12-109 (216)
190 1wyy_A E2 glycoprotein; membra 34.4 23 0.00078 29.8 2.6 27 130-156 61-87 (149)
191 2nrj_A HBL B protein; enteroto 34.3 2.2E+02 0.0075 26.0 9.5 76 128-203 118-193 (346)
192 2l7b_A Apolipoprotein E, APO-E 34.1 1.3E+02 0.0046 27.2 8.0 25 137-161 100-124 (307)
193 4abx_A DNA repair protein RECN 34.1 1.9E+02 0.0064 23.5 8.4 68 122-189 90-160 (175)
194 3oja_A Leucine-rich immune mol 34.0 1.3E+02 0.0043 27.7 7.9 10 99-108 343-352 (487)
195 2ocy_A RAB guanine nucleotide 33.6 1.5E+02 0.0052 24.7 7.6 14 56-69 16-29 (154)
196 3he5_B Synzip2; heterodimeric 33.3 78 0.0027 21.7 4.7 34 174-207 12-45 (52)
197 3plt_A Sphingolipid long chain 33.3 2.6E+02 0.0088 24.8 12.3 88 125-216 61-154 (234)
198 2fxo_A Myosin heavy chain, car 33.3 1.7E+02 0.006 22.9 10.1 33 140-172 72-104 (129)
199 3u5c_K 40S ribosomal protein S 33.1 6.8 0.00023 31.2 -0.7 24 212-235 69-92 (105)
200 3gpv_A Transcriptional regulat 32.9 1E+02 0.0035 24.5 6.3 25 183-207 106-130 (148)
201 1gl2_B Syntaxin 7; membrane pr 32.6 1.2E+02 0.004 21.2 5.8 43 172-214 9-51 (65)
202 4f23_A Hemagglutinin, H16; sia 32.6 43 0.0015 33.1 4.6 78 119-196 370-457 (515)
203 2a01_A Apolipoprotein A-I; fou 32.5 2.3E+02 0.0079 24.3 8.9 23 166-188 104-126 (243)
204 2vs0_A Virulence factor ESXA; 32.4 1.3E+02 0.0044 21.0 9.5 30 134-163 10-39 (97)
205 2xzm_7 Plectin/S10 domain cont 32.3 11 0.00038 32.0 0.4 33 210-242 67-100 (162)
206 2v66_B Nuclear distribution pr 32.3 1.9E+02 0.0064 22.9 12.1 73 147-219 6-82 (111)
207 1cii_A Colicin IA; bacteriocin 32.1 1.6E+02 0.0056 29.2 8.5 84 149-233 354-444 (602)
208 2xz3_A Maltose ABC transporter 31.7 1.1E+02 0.0037 28.0 7.0 39 181-219 381-419 (463)
209 1sum_B Phosphate transport sys 31.6 2.2E+02 0.0075 23.5 9.2 81 120-200 12-109 (235)
210 2d4y_A HAP1, flagellar HOOK-as 31.3 3.2E+02 0.011 25.3 10.9 42 119-160 64-105 (463)
211 3efg_A Protein SLYX homolog; x 31.3 1.3E+02 0.0045 22.1 6.2 49 143-191 13-61 (78)
212 1nfn_A Apolipoprotein E3; lipi 31.1 2.3E+02 0.008 23.7 8.9 24 165-188 99-122 (191)
213 1go4_E MAD1 (mitotic arrest de 31.0 41 0.0014 26.4 3.5 42 170-211 10-51 (100)
214 3nmd_A CGMP dependent protein 30.9 91 0.0031 23.1 5.2 42 152-193 27-68 (72)
215 2wr1_A Hemagglutinin; glycopro 30.4 49 0.0017 32.6 4.6 78 119-196 376-463 (509)
216 2bbh_A Divalent cation transpo 30.4 1E+02 0.0036 25.9 6.3 66 132-199 174-239 (269)
217 1jth_B Syntaxin 1A; coiled-coi 30.3 1.5E+02 0.0051 21.1 6.9 53 172-224 10-66 (77)
218 1l8d_A DNA double-strand break 30.2 1.7E+02 0.0058 21.7 9.4 33 168-200 67-99 (112)
219 3mts_A Histone-lysine N-methyl 30.1 15 0.0005 26.1 0.7 21 105-125 19-39 (64)
220 1p68_A De novo designed protei 30.0 26 0.0009 26.9 2.1 20 29-48 3-22 (102)
221 2dfs_A Myosin-5A; myosin-V, in 29.9 5.2E+02 0.018 27.3 12.8 60 123-183 957-1016(1080)
222 2yo3_A General control protein 29.8 92 0.0032 28.3 6.0 30 174-203 218-247 (268)
223 3oz2_A Digeranylgeranylglycero 29.7 7.8 0.00027 33.0 -1.0 13 13-25 7-19 (397)
224 3hd7_B Syntaxin-1A; membrane p 29.5 1.9E+02 0.0065 22.1 9.7 42 172-213 14-62 (109)
225 1fgj_A Hydroxylamine oxidoredu 28.9 24 0.00082 34.5 2.2 10 102-111 462-471 (546)
226 3ghg_B Fibrinogen beta chain; 28.8 3.2E+02 0.011 26.6 9.9 23 197-219 160-182 (461)
227 3qne_A Seryl-tRNA synthetase, 28.8 2.6E+02 0.0088 27.1 9.3 21 190-210 75-95 (485)
228 3nvo_A Zinc transport protein 28.8 44 0.0015 28.2 3.6 68 129-199 147-214 (264)
229 2eqb_B RAB guanine nucleotide 28.4 2.1E+02 0.0072 22.3 7.2 52 141-192 9-60 (97)
230 3uux_B Mitochondrial division 28.3 3.2E+02 0.011 24.4 10.8 71 121-195 151-221 (242)
231 3zrx_A AF1503 protein, osmolar 27.6 1.4E+02 0.0049 20.1 8.1 17 166-182 67-83 (115)
232 2z5i_A TM, general control pro 27.6 1E+02 0.0035 21.1 4.7 30 147-176 15-44 (52)
233 3p8q_A GP5, head protein; viru 27.2 13 0.00045 34.1 0.0 36 164-206 33-68 (385)
234 2lf0_A Uncharacterized protein 27.1 1.2E+02 0.0041 24.7 5.6 55 149-212 8-62 (123)
235 2dq0_A Seryl-tRNA synthetase; 27.0 1.8E+02 0.0061 27.6 7.8 17 139-155 47-63 (455)
236 1rty_A YVQK protein; all alpha 26.8 1.8E+02 0.0062 24.8 7.1 46 162-207 55-102 (193)
237 2lf0_A Uncharacterized protein 26.7 29 0.00099 28.3 1.9 36 31-66 15-56 (123)
238 1wt6_A Myotonin-protein kinase 26.4 2.1E+02 0.0072 21.7 8.3 28 120-147 11-38 (81)
239 4egw_A Magnesium transport pro 26.4 1.1E+02 0.0036 26.4 5.7 64 134-199 161-224 (280)
240 4i78_C Hemagglutinin HA2; infl 26.3 31 0.0011 29.7 2.2 77 119-195 36-122 (181)
241 1ez3_A Syntaxin-1A; three heli 26.1 1.3E+02 0.0043 22.7 5.5 15 128-142 14-28 (127)
242 3r4h_A Coiled coil helix CC-TE 25.8 62 0.0021 20.6 3.0 24 169-192 6-29 (34)
243 2b9b_A Fusion glycoprotein F0; 25.8 1.2E+02 0.004 29.9 6.3 22 130-151 427-448 (497)
244 1nog_A Conserved hypothetical 25.4 1.3E+02 0.0043 25.4 5.8 46 162-207 50-95 (177)
245 1gd2_E Transcription factor PA 25.4 2E+02 0.0067 20.9 8.2 50 140-189 18-67 (70)
246 4hb9_A Similarities with proba 25.1 11 0.00036 32.6 -1.0 12 13-24 4-15 (412)
247 1gk4_A Vimentin; intermediate 25.1 2E+02 0.0069 21.0 9.9 36 167-202 35-70 (84)
248 1qu7_A Methyl-accepting chemot 25.1 3.1E+02 0.011 23.2 12.7 19 55-73 68-87 (227)
249 2lw1_A ABC transporter ATP-bin 25.0 2E+02 0.007 21.0 7.7 24 152-175 23-46 (89)
250 2g2d_A ATP:cobalamin adenosylt 24.8 2E+02 0.0069 24.4 7.0 21 162-182 58-78 (193)
251 3cve_A Homer protein homolog 1 24.8 2.1E+02 0.0072 21.1 8.9 56 149-207 5-60 (72)
252 2r2v_A GCN4 leucine zipper; co 24.7 85 0.0029 20.3 3.5 24 152-175 2-25 (34)
253 2xhe_A UNC18; exocytosis, exoc 24.6 2.2E+02 0.0075 27.8 8.2 31 113-143 277-309 (650)
254 2iub_A CORA, divalent cation t 24.5 1.2E+02 0.004 27.3 5.8 27 4-31 21-51 (363)
255 4gip_D Fusion glycoprotein F1; 24.5 53 0.0018 31.5 3.6 53 130-193 346-398 (409)
256 3hd7_A Vesicle-associated memb 24.4 2.2E+02 0.0075 21.1 8.3 22 129-150 8-29 (91)
257 2bni_A General control protein 24.4 80 0.0027 20.4 3.3 27 152-178 2-28 (34)
258 4ev6_A Magnesium transport pro 24.4 1.1E+02 0.0038 27.2 5.6 65 135-201 162-226 (339)
259 2efr_A General control protein 24.3 3.1E+02 0.01 22.8 11.5 76 123-198 74-152 (155)
260 3mq7_A Bone marrow stromal ant 24.1 2.9E+02 0.0098 22.4 11.9 72 127-208 22-100 (121)
261 3m9b_A Proteasome-associated A 24.1 1E+02 0.0035 27.8 5.2 34 148-181 58-91 (251)
262 3b5n_B Protein SSO1; snare com 24.1 1.9E+02 0.0064 20.2 6.9 42 172-213 10-51 (69)
263 1fxk_C Protein (prefoldin); ar 24.0 2E+02 0.0068 22.1 6.4 33 99-144 74-106 (133)
264 2fyz_B Fusion protein, fusion 23.7 76 0.0026 21.9 3.3 21 131-151 12-32 (48)
265 2fxo_A Myosin heavy chain, car 23.6 2.6E+02 0.009 21.8 12.7 11 146-156 36-46 (129)
266 1n7s_B Syntaxin 1A; neuronal s 23.5 1.9E+02 0.0065 20.1 6.9 42 172-213 12-53 (68)
267 2yp5_A Hemagglutinin, haemaggl 23.4 31 0.001 34.0 1.8 78 119-196 365-452 (503)
268 3c3f_A Alpha/beta peptide with 23.4 94 0.0032 20.1 3.5 27 152-178 2-28 (34)
269 4i0x_B ESAT-6-like protein MAB 23.3 2.2E+02 0.0075 20.8 8.7 9 124-132 16-24 (103)
270 1lrz_A FEMA, factor essential 23.3 2E+02 0.0068 26.3 7.2 22 124-145 245-266 (426)
271 1urq_A M-tomosyn isoform; tran 23.3 2E+02 0.0069 20.3 7.0 30 128-157 6-35 (63)
272 2epl_X N-acetyl-beta-D-glucosa 23.2 3.7E+02 0.013 26.6 9.5 96 144-240 500-598 (627)
273 1t72_A Phosphate transport sys 23.1 3E+02 0.01 22.2 9.1 81 120-200 16-113 (227)
274 1v9d_A Diaphanous protein homo 22.8 3.4E+02 0.012 24.2 8.5 43 190-232 249-292 (340)
275 3b5n_D Protein transport prote 22.8 2E+02 0.007 20.2 8.1 11 133-143 10-20 (64)
276 2vrs_A Sigma-C capsid protein; 22.8 54 0.0018 28.9 3.0 36 172-207 4-39 (211)
277 3lss_A Seryl-tRNA synthetase; 22.7 2.2E+02 0.0074 27.6 7.6 12 142-153 56-67 (484)
278 3ljm_A Coil Ser L9C; de novo d 22.7 1.5E+02 0.005 18.5 4.2 24 139-162 3-26 (31)
279 1sfc_B Protein (syntaxin 1A), 22.7 2.2E+02 0.0076 20.6 6.8 52 172-223 21-76 (83)
280 3kpe_A Fusion glycoprotein F0; 22.5 1.1E+02 0.0038 21.2 4.1 30 124-153 16-45 (51)
281 1woz_A 177AA long conserved hy 22.2 2.1E+02 0.0073 23.9 6.6 46 162-207 49-94 (177)
282 3t37_A Probable dehydrogenase; 22.2 12 0.00043 34.3 -1.2 15 13-27 20-34 (526)
283 2wuj_A Septum site-determining 22.2 78 0.0027 21.8 3.3 26 181-206 29-54 (57)
284 2zvf_A Alanyl-tRNA synthetase; 21.5 1.5E+02 0.005 23.5 5.3 50 185-235 81-146 (171)
285 1q08_A Zn(II)-responsive regul 21.3 1.7E+02 0.006 20.9 5.2 36 143-178 38-73 (99)
286 2hn1_A CORA, magnesium and cob 21.3 68 0.0023 27.2 3.4 64 132-198 175-238 (266)
287 3gpv_A Transcriptional regulat 21.1 2.6E+02 0.0089 22.1 6.6 29 146-174 97-125 (148)
288 4b4t_J 26S protease regulatory 21.0 80 0.0027 29.8 4.1 45 146-190 20-64 (405)
289 3m9b_A Proteasome-associated A 21.0 78 0.0027 28.5 3.8 43 151-193 54-96 (251)
290 1hx1_B BAG-1, BAG-family molec 20.9 2.3E+02 0.0079 22.7 6.2 45 122-166 14-64 (114)
291 3qfl_A MLA10; coiled-coil, (CC 20.9 2E+02 0.0068 21.8 5.7 21 188-208 61-81 (115)
292 3bbp_D GRIP and coiled-coil do 20.7 1.3E+02 0.0044 22.3 4.3 29 118-146 14-42 (71)
293 3u06_A Protein claret segregat 20.6 2.7E+02 0.0091 26.1 7.6 56 121-180 5-60 (412)
294 2iub_A CORA, divalent cation t 20.6 4.6E+02 0.016 23.4 9.8 19 124-142 193-211 (363)
295 3eq2_A Probable two-component 20.6 4.3E+02 0.015 23.1 8.8 46 73-124 76-122 (394)
296 2j69_A Bacterial dynamin-like 20.6 2.5E+02 0.0085 27.7 7.7 25 150-174 365-389 (695)
297 2hy6_A General control protein 20.6 1.1E+02 0.0036 19.8 3.3 9 155-163 5-13 (34)
298 1t98_A KICB protein, chromosom 20.5 2.3E+02 0.0078 25.9 6.7 22 186-207 244-265 (287)
299 1svf_B Protein (fusion glycopr 20.4 1E+02 0.0036 19.9 3.4 22 131-152 10-31 (38)
300 2j69_A Bacterial dynamin-like 20.3 4.5E+02 0.016 25.8 9.5 27 159-185 367-393 (695)
301 3u0c_A Invasin IPAB, 62 kDa an 20.2 4.2E+02 0.014 22.9 10.0 46 163-208 91-139 (201)
302 2jqq_A Conserved oligomeric go 20.2 75 0.0026 27.9 3.4 98 130-235 4-106 (204)
303 2olt_A Hypothetical protein; s 20.2 3.6E+02 0.012 22.1 9.6 19 189-207 160-178 (227)
304 1lwu_A Fibrinogen alpha-1 chai 20.2 1.5E+02 0.0051 24.0 4.9 40 137-179 22-61 (119)
305 4dpv_Z Protein (parvovirus coa 20.1 29 0.00098 34.6 0.8 11 101-111 522-532 (584)
306 2xz3_A Maltose ABC transporter 20.1 1.7E+02 0.0058 26.6 6.0 54 166-224 380-433 (463)
307 2qyw_A Vesicle transport throu 20.1 2.9E+02 0.0098 20.9 7.5 61 132-192 14-76 (102)
No 1
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=94.34 E-value=0.078 Score=40.96 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=49.7
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025130 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
|||+|-+..-.... .++..|.+|...+...+.-|-|-+..=-+++.+++-....-|.-++.|-....+
T Consensus 8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888777642221 345555556555555555555555444455666665556667777788888888
Q ss_pred hhhhhhhhh
Q 025130 198 LDGKIDSLA 206 (257)
Q Consensus 198 Le~Ki~~ie 206 (257)
+..+++.||
T Consensus 76 ~nkRLDkle 84 (85)
T 2ba2_A 76 INKRLDNLE 84 (85)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhccC
Confidence 888998886
No 2
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=93.76 E-value=0.61 Score=36.82 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
+..|++.|..|++.++..+++..+....++++++.+...+.+.
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999988888888888887777655443
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=93.76 E-value=0.94 Score=36.78 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=69.8
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH---HHHh-hhhc----------CCCeEEEeCCCCCcceeehhhh
Q 025130 30 KLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNRL---KFEC-QRAS----------SGQIFVRNENSGGNATSLMIPA 95 (257)
Q Consensus 30 kLsd~~g~lq~~lk~~~k~gd~~~~~d~L~aQV~~L---~~El-~Las----------sr~iTVvn~~sGg~~s~~ivpa 95 (257)
.+++=+..|...+..++. ....|..+.++| ...+ +... ...-+-|.-|++.-..+-|.|+
T Consensus 6 ~~~~~l~ql~~~~qql~~------~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~ 79 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQA------QAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDK 79 (151)
T ss_dssp SSTTHHHHHHHHHHHHTT------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCT
T ss_pred hhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCC
Confidence 445545666666665553 355666666666 4433 2111 2234445655552111222111
Q ss_pred h-HhhhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 025130 96 A-TLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 96 A-~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (257)
= ++.-+|.||+-.+- +..|++.|..||+.++..+++..+..+.+++++
T Consensus 80 ~~V~v~lG~g~~vE~~-------------------------------~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i 128 (151)
T 2zdi_C 80 NNAIVSVGSGYAVERS-------------------------------IDEAISFLEKRLKEYDEAIKKTQGALAELEKRI 128 (151)
T ss_dssp TEEEEEEETTEEEEEE-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCeEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12358899998884 578888999999999998888877777777777
Q ss_pred HHhhhhHHH
Q 025130 175 EEACDDLFK 183 (257)
Q Consensus 175 ~~v~~d~~~ 183 (257)
+.+...+.+
T Consensus 129 ~~~~~~l~~ 137 (151)
T 2zdi_C 129 GEVARKAQE 137 (151)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666654444
No 4
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=93.12 E-value=1.4 Score=34.75 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=62.3
Q ss_pred HHHHHhhH---HHHHHHHHHHHHHHHHHHhhH----HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 129 SNLNKHLE---SVTEALTVAKKHLTQRIQNLN----DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 129 ~sv~kqLe---qVs~sL~~tKkhLsqRI~~vd----~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
+.++|||. +..+.+..+|+.|..+|+.+. .|++++.+....++.++..=..++..+..+++.....=..|..+
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666664 667788999999999999865 56778888888888888888888888888888887777777777
Q ss_pred hhhhhh
Q 025130 202 IDSLAD 207 (257)
Q Consensus 202 i~~ie~ 207 (257)
++.++.
T Consensus 91 ~~~l~~ 96 (107)
T 2no2_A 91 FAELEK 96 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 5
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=91.10 E-value=2.8 Score=40.71 Aligned_cols=97 Identities=12% Similarity=0.243 Sum_probs=62.1
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH-----Hh
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK---HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF-----KV 184 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKk---hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~-----~i 184 (257)
+.|++=-..++....+..+-..|++++..-.+++. +|+..+...+.++.++.+..+.-.+++.+.+.-+. .+
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 48999999999999999999999999877666553 35555555555555555444444444443333222 23
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
...+..++..++.|..||..+|.+-
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666543
No 6
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=90.50 E-value=3.1 Score=36.17 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~ 162 (257)
++.|+..++..+..+.+.++..-.++..-++.+....++
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~ 43 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISEN 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444444444444444433333333
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.75 E-value=4.4 Score=40.32 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=71.3
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhH-------HHHHHHHHHHHHHHHHhhhhHHHhh
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV-------EKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kl-------d~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+-++|-=+-|++.+-++.|-.+|++++..=..+-....+..+.|..++ +-..|++.+.+..+..+++.|.+--
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788889999999999999999997765555555555444444443 3445556666666777777776655
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 025130 186 HNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
.-++.||..|+.+-.||.+||---|+-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888755544
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.70 E-value=3.5 Score=39.38 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=73.2
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVT-------EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs-------~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+-++|==+.|++.+.++.+...|+.++ .-+..++..|.+|.....+.=+-..|.+..++.....+++.|..--
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666677888888888888887663 4456667777777777777777777888888888888888877644
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 186 HNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
-+|..|+..|+.+-.||.+||..-|
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888888887653
No 9
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.59 E-value=0.56 Score=37.51 Aligned_cols=43 Identities=7% Similarity=0.182 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 165 EISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 165 eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+-...++.|+++++..+.....++++++..-..||..|...|.
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444443
No 10
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=89.36 E-value=7.2 Score=33.80 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=42.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 130 sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.+...+++++..+...-..+....+.+....++..+.+..+.+.+......+.++...+..+...+..+..++..
T Consensus 4 qva~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (213)
T 3g67_A 4 EVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRS 78 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666666666666655555555555555555555444444444444433
No 11
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=89.23 E-value=3.5 Score=34.40 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH------------HhhhhHHHhhhhHHHHHHHHH--------hhh
Q 025130 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE------------EACDDLFKVEHNLKDLQSMIY--------CLD 199 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~------------~v~~d~~~i~~dv~~v~~~V~--------~Le 199 (257)
.-+..-|++|+.+.|+|-.++|+.+.+.+..+++|. .+..|+.....|++.+...+. .+|
T Consensus 10 ~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE 89 (141)
T 3okq_A 10 MYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWE 89 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 346778999999999999999999999999998864 456666666667666666664 357
Q ss_pred hhhhhhhhhhHHHhHHHHHHHH
Q 025130 200 GKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 200 ~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
..|..|..-|+|-|.==.++..
T Consensus 90 ~EL~~VceEQqfl~~QedL~~D 111 (141)
T 3okq_A 90 AELDKVCEEQQFLTLQEELILD 111 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7778887888877765444433
No 12
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=88.94 E-value=6.6 Score=36.24 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
.|.+++..+-..=..+-++|..+.+.+.+-|++.-. ..++......+++++++++..+.+++-.-..-++.|.+|-..|
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRA-VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHH-HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence 344555544444345677888888888888877644 4477888899999999999999999988888888887775544
Q ss_pred h
Q 025130 203 D 203 (257)
Q Consensus 203 ~ 203 (257)
+
T Consensus 435 ~ 435 (471)
T 3mq9_A 435 D 435 (471)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.62 E-value=2.9 Score=36.56 Aligned_cols=18 Identities=6% Similarity=-0.113 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHhhhhhhh
Q 025130 186 HNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~ 203 (257)
.+++....-...||.+|-
T Consensus 97 kEie~~~~~i~~lE~eil 114 (256)
T 3na7_A 97 IEEDIAKERSNQANREIE 114 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 14
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.54 E-value=0.52 Score=37.83 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH---HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 138 VTEALTVAKKH---LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 138 Vs~sL~~tKkh---LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
-.+.+..+|.+ +..+|+.|...++.+...-......+.++. .+...+++.++..+..||.-+..
T Consensus 29 ~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e---~~~~~~l~~~q~~i~~lE~eL~~ 95 (131)
T 3tnu_A 29 NSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK---GRYCMQLAQIQEMIGSVEEQLAQ 95 (131)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444432 334555555555555544444444454444 23344455555555555555543
No 15
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=86.99 E-value=6.8 Score=28.19 Aligned_cols=69 Identities=14% Similarity=0.299 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 123 SMATAVSNLNKHLESVTE-ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~-sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.|+.+.+.|=.|-|.+-. .-+.+..-...+++.+........+-...++.|+++++..+..+..+++++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666665433 334555566777777766666666666667777776666666666665554
No 16
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=85.86 E-value=11 Score=36.87 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=87.9
Q ss_pred eccCcchhHHHhHhhHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025130 109 KGLSFADLMYVTRKSMATAVSNLNKHLESV-------TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 109 KGws~sDlMfVTkr~ms~Av~sv~kqLeqV-------s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
-|--+-++|-=+.|+..+.++.+.+.|+.+ +.-+..++.-+.+|.....+.=+-..|.+..++.....+++.+
T Consensus 48 SGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 48 SGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 455677888889999999999999999887 4557778888888888888888888999999999999999998
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 025130 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
..--..|..|+..|+.+-.||.+||.--+..
T Consensus 128 d~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 128 ATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7755999999999999999999999865544
No 17
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.53 E-value=6.2 Score=36.60 Aligned_cols=66 Identities=15% Similarity=0.016 Sum_probs=50.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
+....+++.++.++.+.+-..+..|.+.++.+++.+++--..++..+.+++..=.-++.-...+|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 334555666777788888888888888888888888888888888888887777777777777665
No 18
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=85.07 E-value=2.4 Score=38.71 Aligned_cols=58 Identities=16% Similarity=0.366 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
...|+++++..++....+|+..|+.+++....=..++.+.|.++-..+-.|..+++.+
T Consensus 199 Nv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 199 NYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778899999988888888877766654444444444444444444444444433
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.09 E-value=11 Score=30.68 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=48.9
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
.+.++++.+...+++...=....+.++...+..++....++..++.-+..|+.++.++|.+.+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667777777777777777778888888888888888888888888888888888877654
No 20
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=83.82 E-value=0.83 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.488 Sum_probs=24.5
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
+++..|+.+++.+|..|..+++++|+..
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999764
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.67 E-value=17 Score=30.97 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=42.8
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
-+.+.++...+-+.+-++...|..=|+--+ .+|..+..++ .....|+..++...++...|...++..+..
T Consensus 57 ~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri-------~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 57 NRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARI-------TSLQEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443222 2222222222 223455555556666666777778888888
Q ss_pred hhhhhhhhh
Q 025130 198 LDGKIDSLA 206 (257)
Q Consensus 198 Le~Ki~~ie 206 (257)
||..-.+++
T Consensus 130 lEKe~a~~e 138 (168)
T 3o0z_A 130 SEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 887766655
No 22
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=83.52 E-value=6.2 Score=37.73 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025130 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 125 s~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
.+....-=+|..+.-..+...-.+|.+||.-|..+++.+..-.+..|..|..++.++.++..||+.
T Consensus 94 ~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 94 VELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444566778888888888888887788888888888888888888753
No 23
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=83.28 E-value=16 Score=29.26 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=15.1
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+.++..+...+..+..++..+...+..++..+..++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (284)
T 1c1g_A 68 QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQ 103 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
No 24
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=83.10 E-value=3.6 Score=33.38 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=14.6
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAK 146 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tK 146 (257)
|++.|.++|.++..+|+.+.+++..+.
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555544
No 25
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.78 E-value=14 Score=33.97 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHHHhhHHhHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEAL------TVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL------~~tKkhLsqRI~~vd~kld~~ 163 (257)
.+...|++.+.+++++.-+.+ +.+.++|++.|+++.+++-+.
T Consensus 369 ~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 369 QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDV 416 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHH
Confidence 355666666666665554433 345667888888888887654
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.25 E-value=13 Score=34.92 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=29.8
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd 157 (257)
...+.+.+..+...+++....++..++++..|.+...
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3446678888888888888899999999888887766
No 27
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=82.19 E-value=17 Score=28.89 Aligned_cols=72 Identities=15% Similarity=0.402 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM 194 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (257)
....++++=++.++.-|-+|++--+.|.| |++....+++|..+=-+++.+++.++-.+.-.+..++..+...
T Consensus 31 ~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 31 AIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677788888888888888755555544 5555555555554445555566666666666666666555443
No 28
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=82.18 E-value=21 Score=30.06 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=41.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 127 Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+|+.. +.+.+.-..|+.-..++..||..++..+.+-....+.++||. ..++--..-+|.|+..++
T Consensus 59 ~vs~~-~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl--------------~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 59 IVSHD-DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL--------------ISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 44444 334445666777777777777777766666555555555554 445555566677777666
Q ss_pred h-hhH
Q 025130 207 D-KQD 210 (257)
Q Consensus 207 ~-kQd 210 (257)
. |+.
T Consensus 124 ~EN~~ 128 (152)
T 3a7p_A 124 KEHSQ 128 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 5 443
No 29
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.03 E-value=12 Score=28.45 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
++.|..|+++..+.+...+-+|.++++.-.....+.+.++.-...|+....++..-|..-...|..|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555566665555555555555555555555555555544444444444333
No 30
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=81.94 E-value=3.2 Score=31.45 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=14.6
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV 174 (257)
.|..||..+...|++...=....+.|+
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555444444
No 31
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=81.88 E-value=6.1 Score=30.47 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=42.3
Q ss_pred chhHHHhHhhHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 114 ADLMYVTRKSMATAVSNLNKHLESVTEALT-VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 114 sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~-~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
|+++----+.+...++++++.++++..... ..|+. .|..++..|||..|+..++.-||..+-
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~---~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKK---LVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344545556677777888888877643322 34443 367778889999999999988887653
No 32
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=81.73 E-value=6.8 Score=29.89 Aligned_cols=53 Identities=6% Similarity=0.191 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
..+...++++...++++...=...|+. -|..++..+|+..|+..++.-||..+
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~---~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRNT---TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455677788888888776333334443 36777889999999999999999888
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.59 E-value=10 Score=33.05 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+.|...+++|-..|+.+.+.+.....-...++.++.++...+.++..|++.++..+...+.++..+.
T Consensus 21 ~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~ 87 (256)
T 3na7_A 21 DSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK 87 (256)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4455555666666666666666666666666666666666666666666666666666665555443
No 34
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=81.50 E-value=6.6 Score=27.54 Aligned_cols=52 Identities=8% Similarity=0.246 Sum_probs=29.0
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025130 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
+.++.|..++..++.++..|.+||.+=-.=+.++..+++.....+..--.|+
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl 60 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRV 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665555555555555555544444433333
No 35
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=80.53 E-value=7.6 Score=26.62 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=18.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
++.+++++.+.-..++.+..+.+..+.+.-.++..++.-+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433333344444444444444444444444444333333
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.62 E-value=16 Score=26.87 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=27.6
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
..|.+.+..++.+...-.....++|..++..+..+..|++....-+.....|+.
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444454444444455555555555555555555555555444444444
No 37
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=78.29 E-value=26 Score=34.02 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhHHhHHHH
Q 025130 146 KKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~ 163 (257)
++++...|+.|.+++++.
T Consensus 95 q~~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 95 EKTVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHH
Confidence 333333333333333333
No 38
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=78.03 E-value=8 Score=34.47 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=63.0
Q ss_pred cCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHH------HH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025130 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK------HL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 111 ws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKk------hL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
+|.|=+|||-... .|--+-.+|-=|-=+++..+.-| .| ..||..+..++|+..+=+-...+.+..+.--+
T Consensus 36 FS~sYllyVi~qg-tDvG~VA~KANeAGqgAYdAQVrNDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Ri 114 (242)
T 3c9i_A 36 FSKSYLLYVIAQG-TDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRV 114 (242)
T ss_dssp SCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhccc-chHHHHhhhhhhhhhhhhHHHhcCcccceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhhee
Confidence 5667788887554 23333344444433444433222 23 57899999999988876666666777777777
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 182 FKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
.....||..++.-|..|++++...|.+
T Consensus 115 t~~e~~i~~l~~~v~~ld~~vt~~et~ 141 (242)
T 3c9i_A 115 TTAEGEIASLQTNVSALDGRVTTAENN 141 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhhhhhhhhhcccccccccc
Confidence 777888888877777777777655543
No 39
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=77.52 E-value=16 Score=25.62 Aligned_cols=48 Identities=4% Similarity=0.227 Sum_probs=24.4
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMI 195 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V 195 (257)
+.-+.++.|..++..++.++..|-+|+..=-.=+..|..+++.....+
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l 54 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRI 54 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344455555555556666666666665444444444444444443333
No 40
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=77.39 E-value=23 Score=27.51 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=40.8
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhc
Q 025130 176 EACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDG 225 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~ 225 (257)
..+.-+..||.|+-.|+...+.||.-+. .|.-++.-..-||++.+.
T Consensus 34 ~lk~~L~Kig~Ei~~l~eLLn~~E~eV~----~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 34 TLKTVLNKIGDEIIVINELLNKLELEIQ----YQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999998 899999999999999863
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.26 E-value=11 Score=37.60 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH----HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 025130 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI----RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 138 Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i----~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
+...|-++-+-|+.||+.|-.++++...-.+.+ +.....++.++.+.++.-..+.++-+.||.+|..|+.+-+-
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888876555444 34455556666666633333333333566666655554443
No 42
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=77.16 E-value=18 Score=26.09 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=37.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh-----HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDK-----VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 129 ~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k-----ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
...++++.+..+.|......|.+.|+.|... -+.-.+.-...+..+..+..-|..|...+...-...+.-|.++.
T Consensus 14 ~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~A 93 (98)
T 3gwk_C 14 RSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIA 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444211 12223333445555666666666666666666666666665554
No 43
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=76.79 E-value=2.4 Score=28.81 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhHHhHHHHHHH
Q 025130 145 AKKHLTQRIQNLNDKVEKQNEI 166 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~ei 166 (257)
+|.+|-|.|++||..++...+=
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~k 24 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQ 24 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999988766433
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.57 E-value=10 Score=30.05 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=40.9
Q ss_pred HHHhhHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 131 LNKHLESVTEALTVAKKH---LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 131 v~kqLeqVs~sL~~tKkh---LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+.++...-++.+..+|.+ +..+|+.|...++.+...-......+.++. .+...+++.++..+..||.-+..+
T Consensus 20 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e---~~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 20 LQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE---QRGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333444444555556543 445788888888887777777777776666 345567777788888888777655
No 45
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=75.99 E-value=9.7 Score=31.36 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=21.9
Q ss_pred CcchhHHHhHhhHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025130 112 SFADLMYVTRKSMATA------VSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 112 s~sDlMfVTkr~ms~A------v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd 157 (257)
+..|.+....+.|... .+.+...|+.++..|..+-..|..-.++++
T Consensus 67 ~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le 118 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSA 118 (175)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555555555432 334444444444445554444444444443
No 46
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.46 E-value=25 Score=26.80 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=39.6
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
....-|.+.+..++.+..+-.....++|..++..+..+..|++....-....-.++..-+..-.-+-..|..|
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555566666666666666666666665555555555554444433333344433
No 47
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=74.91 E-value=22 Score=26.51 Aligned_cols=42 Identities=2% Similarity=0.192 Sum_probs=18.1
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
-+.++.|...+..++.++..|-+||..=-.=|..|..+++..
T Consensus 28 D~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~ 69 (87)
T 1sfc_D 28 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSN 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333444444444444555555444444333333333333333
No 48
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=74.74 E-value=14 Score=27.18 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=23.3
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
..|+.+++.=..++..|+.++++...+=..++.-+..+..
T Consensus 36 ~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 36 QRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666666655544
No 49
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=74.37 E-value=18 Score=24.69 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
++.-......-.+++..+++....++++..+-...+++++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555554444444444444333
No 50
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=74.35 E-value=20 Score=25.13 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=38.7
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
|.+++.++..|++...-|...-..+|......++.....-..-+..+..||.|+.+++
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 5566677777777665555555566666666666665555555778888888887655
No 51
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.23 E-value=27 Score=26.74 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=30.9
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.-|.+.+..++.+...-.....++|..++..+..+..|++..+..+...-.++..-+
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~e 78 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555566666666666666666655555554444444433
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.18 E-value=10 Score=30.12 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=31.4
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHH
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIG 215 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G 215 (257)
.....+++.+........+-...++.|+++++..+.....++++++..-..||..|...|..-......
T Consensus 13 ~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~ 81 (131)
T 3tnu_A 13 EWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ 81 (131)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666777888888888888888888888888888888888777755544433
No 53
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.45 E-value=35 Score=32.49 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=44.1
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh--------HHHHHHHHHHHHHHHHHhhhhHHHh
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK--------VEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k--------ld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
+.|++===.+++-.-+..+-+.|++|+.+-+.++.. .+-|+....+ .+...+-++.+.+++..+..-+.+.
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~L-vk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~ 103 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYL-IQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAH 103 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 345554445555555555555555555554444422 2222222111 2333334444555555555555555
Q ss_pred hhhHHHHHHHHHhhhhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~i 205 (257)
...+..++..+..++.||..+
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 104 ENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 555555555555555555544
No 54
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=73.39 E-value=23 Score=26.80 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=40.4
Q ss_pred hhHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 122 KSMATAVSNLN---KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 122 r~ms~Av~sv~---kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
++|.+-+.++= ++|-..-.+|.-+|+.|..|+|.|.+.-+ .+..++.+++++-..+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e---------------------~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKD---------------------VLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHH
Confidence 34555555553 34444556788888889888877766533 3456677778888888
Q ss_pred hhhhhhhhh
Q 025130 199 DGKIDSLAD 207 (257)
Q Consensus 199 e~Ki~~ie~ 207 (257)
+.|+.++|.
T Consensus 64 ~~ri~elEe 72 (77)
T 2w83_C 64 EEKNRELEE 72 (77)
T ss_dssp HHHC-----
T ss_pred HHHHHHHHH
Confidence 888887764
No 55
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=73.31 E-value=52 Score=29.52 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHh
Q 025130 56 DAIKDQLNRLKFEC 69 (257)
Q Consensus 56 d~L~aQV~~L~~El 69 (257)
..|...++++...|
T Consensus 37 g~l~~~~n~~~~~l 50 (341)
T 3zx6_A 37 GILAKSIERLRRSL 50 (341)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555566665555
No 56
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.26 E-value=28 Score=26.44 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=33.4
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.|+.|..|-....+=...++.....+.....+...+....+..+++|=+||+.|
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~v 81 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 444444444433333344444444466677888888888888888888887653
No 57
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=73.15 E-value=8.4 Score=28.69 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=35.5
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
..|.+||+.|..|+--|........+.|++-+ .+|+.++.-+.-|-.|+..++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq-------~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADAR-------LTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 45778999988888888777777777776666 4555566666666777776664
No 58
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=72.96 E-value=5 Score=30.92 Aligned_cols=69 Identities=14% Similarity=0.287 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh--------hhHHHhhhhHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC--------DDLFKVEHNLKDLQS 193 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~--------~d~~~i~~dv~~v~~ 193 (257)
+.+...++++.+.+.++...=...|+. -|..++..|||..|+..++.-||..+- ..+.....|++.++.
T Consensus 12 ~df~~l~~~i~~kl~~i~~~~geerk~---~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 12 QDFAVLTAEITSKIARVPRLPPDEKKQ---MVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888765432233443 377788899999999999998886653 334444555555443
No 59
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.46 E-value=28 Score=26.17 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=17.5
Q ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHhhHHhHHH
Q 025130 128 VSNLNKHLESVTEALT---VAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~---~tKkhLsqRI~~vd~kld~ 162 (257)
...+.+.++++.+.|. .-+..+.++|+.+...+..
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555444433 3345555666666655544
No 60
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=72.25 E-value=23 Score=25.13 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~ 162 (257)
|+++...+..+..+|.+.++.|+..++.
T Consensus 14 l~~~A~~~~~~~~~i~~~l~~L~~~v~~ 41 (99)
T 3zbh_A 14 LRGVARQYNVESSNVTELIARLDQMSHT 41 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 61
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=71.62 E-value=32 Score=33.72 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025130 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 125 s~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
.|....-=+|..+.-..+...-.+|..||.-+..++|.+..-....|..|...+.++.++..||+.
T Consensus 92 ~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 92 INILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444556778888899999888777777777776666666666666653
No 62
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=70.95 E-value=19 Score=27.11 Aligned_cols=25 Identities=4% Similarity=0.116 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHH
Q 025130 170 IRKNVEEACDDLFKVEHNLKDLQSM 194 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (257)
.+.||..+++.++....+++.+...
T Consensus 32 Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 32 NQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3555666666666666666665543
No 63
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=70.69 E-value=42 Score=32.14 Aligned_cols=96 Identities=14% Similarity=0.203 Sum_probs=61.7
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------hHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQN-------LNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~-------vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+.|+|.==.++..+-+..+...|++++.+=+.|+..+..==+. ..+..|-..+-++.+.+|+.....-+.+..
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 6788887788888888888888888887777775544322111 112235555555656666666666666666
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhh
Q 025130 186 HNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
..|..++..+...+.||..++.+
T Consensus 105 ~~i~~l~~~~~~~~~~i~~L~~~ 127 (411)
T 3ghg_C 105 SSIRYLQEIYNSNNQKIVNLKEK 127 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666666555443
No 64
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=70.11 E-value=43 Score=35.40 Aligned_cols=17 Identities=6% Similarity=0.352 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhhHH
Q 025130 121 RKSMATAVSNLNKHLES 137 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeq 137 (257)
+..|.+-+..+...|+.
T Consensus 923 ~~~LE~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDE 939 (1080)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554443
No 65
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=68.84 E-value=30 Score=26.10 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.+.+..+++|++.+..+=.+..+-....++++.+-+..-++...+++ ...+.|++||..+.+
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk---~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG---RAAQLLDVSLFELSE 66 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHH
Confidence 34455666666666666555555555555555555555555554443 445667778877655
No 66
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=68.63 E-value=28 Score=24.61 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=17.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 025130 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 127 Av~sv~kqLeqVs~sL~~tKkhLsqRI~~v 156 (257)
.+..+++++.+..+.|......|.++|+.|
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666666665
No 67
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=68.60 E-value=28 Score=24.60 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=24.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~ 163 (257)
.+|+++...+..+...|.+.+++|...++..
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888877765
No 68
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=68.57 E-value=23 Score=27.69 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhHHhHHH
Q 025130 144 VAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~ 162 (257)
.++++|...|+.++.+++.
T Consensus 47 ~t~~eL~~EI~~L~~eI~~ 65 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQ 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554433
No 69
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=66.99 E-value=12 Score=25.71 Aligned_cols=36 Identities=11% Similarity=0.364 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k 159 (257)
|.+.+..+-..+-.+-....++..+|.|||..+..+
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555556666678999999999988765
No 70
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=66.98 E-value=35 Score=24.98 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=47.7
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHh
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
|..+|+.+-...|...+=......++.+......+...++.+++..+..||.-++..+..=.-++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666667777777777788889999999999999988887776544443
No 71
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=66.11 E-value=29 Score=25.76 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=27.9
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHH
Q 025130 173 NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYL 218 (257)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (257)
-|..++.=--.||.+++.=..++..|+.++++...+=..+|.-+..
T Consensus 37 ~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 37 IIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333443345566677777777777777777766666666655443
No 72
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=65.58 E-value=36 Score=26.96 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|.-|.=.||.|-++|+++.|.-.+++.+..+-..+++........++.-+..|...|.
T Consensus 25 Ksal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 25 KTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566999999999999999999999888888888877777777776666665554
No 73
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=64.12 E-value=42 Score=25.07 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
-|+|..+++.-++.+|..+-+.++.+-.+..--+=-....++....+..+..|+.++.
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 4677777777777788888888887776655444445566677777777777777654
No 74
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=64.05 E-value=24 Score=26.50 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~ 162 (257)
|.+.+..+-..+-.+-....++..+|.|||.+|..++-.
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555555555555566678999999999998887654
No 75
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=63.30 E-value=18 Score=24.91 Aligned_cols=40 Identities=10% Similarity=0.321 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~ 163 (257)
..+-.+.|-.=|+|+.+..+..-..+..|||.+..++|+.
T Consensus 4 ~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 4 VQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444555566666677777777888888888877764
No 76
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=63.05 E-value=85 Score=28.09 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=6.5
Q ss_pred HHHHHHHHh-hhhc
Q 025130 61 QLNRLKFEC-QRAS 73 (257)
Q Consensus 61 QV~~L~~El-~Las 73 (257)
-+++|...+ .++.
T Consensus 7 pl~~l~~~~~~ia~ 20 (341)
T 3zx6_A 7 PIIELSNTVDKIAE 20 (341)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 345555555 4443
No 77
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.77 E-value=75 Score=27.38 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=65.5
Q ss_pred HhHhhHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH----HHHhhhhHHHhhhhHHHH
Q 025130 119 VTRKSMATAVSN---LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN----VEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 119 VTkr~ms~Av~s---v~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e----V~~v~~d~~~i~~dv~~v 191 (257)
-++..+.++.++ +-.-||.=-+.....-++|..++.++...+++.+.=-...+.+ ++.++.+++......+.+
T Consensus 28 ~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l 107 (189)
T 2v71_A 28 EARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQL 107 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555443 3334444445556666777888888887777776655666555 777777777777777777
Q ss_pred HHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 192 QSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 192 ~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
+.-++.||-+=|.+|-+-..+..-+-.+
T Consensus 108 ~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 108 HKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 7777777777777776666665555443
No 78
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=61.59 E-value=22 Score=26.04 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=39.5
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+.++.|..++..++.++..|.+||.+=-.=+..+..+++.....+..--.|+..+-.
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777777667777777777777776666666665543
No 79
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=60.63 E-value=64 Score=25.89 Aligned_cols=93 Identities=15% Similarity=0.258 Sum_probs=55.9
Q ss_pred eeeccCcchhHHHhHhhHHHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 025130 107 WWKGLSFADLMYVTRKSMATAVSNLNKHLESV-----------TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE 175 (257)
Q Consensus 107 wWKGws~sDlMfVTkr~ms~Av~sv~kqLeqV-----------s~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~ 175 (257)
+.-+-|.-|=+|+-|....++++.+-.-..+- ++.+..++++|..-|+.+.+.|++..+...-+..+
T Consensus 19 ~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n-- 96 (130)
T 4dnd_A 19 YFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN-- 96 (130)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred eeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 34456677999999988888888776665552 12577888888999999988888887666655433
Q ss_pred HhhhhHHHhh---hhHHHHHHHHHhhhhhhhhhh
Q 025130 176 EACDDLFKVE---HNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 176 ~v~~d~~~i~---~dv~~v~~~V~~Le~Ki~~ie 206 (257)
=++++ .++..=++.|..++.+|..|+
T Consensus 97 -----p~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 97 -----PGKFKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp -----HHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22332 224444455555555555554
No 80
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.59 E-value=1.1e+02 Score=36.51 Aligned_cols=62 Identities=6% Similarity=0.107 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
.=+.++++...+.|+...+.|++++..| ..+|+.+.++.++...=.+.+++++...+..+++
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777666655443 3455555555555544444555555554444443
No 81
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=60.29 E-value=39 Score=32.82 Aligned_cols=29 Identities=14% Similarity=0.357 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK 172 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~ 172 (257)
++-..+|.+..+++.+..+. ++++++|..
T Consensus 74 ~ld~~~r~~~~~~~~l~~~r---n~~sk~i~~ 102 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEK---EAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34556677777777666544 455555543
No 82
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=59.79 E-value=44 Score=23.75 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~ 162 (257)
|++....|....++|.+.|+.|+..++.
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~ 37 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTK 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555444443
No 83
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=58.96 E-value=23 Score=24.65 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=24.0
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHH
Q 025130 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
|..++.=-..||.+++.=..++..|+.++++...+-..++.-+
T Consensus 18 v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl 60 (65)
T 1gl2_D 18 ISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRV 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333355666666666666666666666665555555443
No 84
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=58.92 E-value=29 Score=26.06 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHh
Q 025130 55 TDAIKDQLNRLKFEC 69 (257)
Q Consensus 55 ~d~L~aQV~~L~~El 69 (257)
...|..|+..|..++
T Consensus 22 ~~~l~~q~~~l~~~~ 36 (117)
T 2zqm_A 22 LQLVVQQKQKVQLEL 36 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777777666
No 85
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=58.80 E-value=52 Score=24.29 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=24.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEI 166 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~ei 166 (257)
-+|++....|..+.++|...|+.|+..++.....
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566667777777777777777777777766555
No 86
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=58.68 E-value=45 Score=23.56 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=42.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh-----HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK-----VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 126 ~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k-----ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
+.+..+++++.+..+.|......|.+.|+.|... -+...+.-...+..+..+..-|..|...+.......+.-|.
T Consensus 12 ~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~ 91 (99)
T 3zbh_A 12 EELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQ 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777432 22222333333444444444445555555555444444444
Q ss_pred hh
Q 025130 201 KI 202 (257)
Q Consensus 201 Ki 202 (257)
++
T Consensus 92 ~~ 93 (99)
T 3zbh_A 92 QI 93 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 87
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=58.61 E-value=33 Score=23.92 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=5.4
Q ss_pred HHHHHHhhHHhHH
Q 025130 149 LTQRIQNLNDKVE 161 (257)
Q Consensus 149 LsqRI~~vd~kld 161 (257)
|+..++.|..|+|
T Consensus 9 Lss~V~~L~~kVd 21 (52)
T 1jcd_A 9 ASSDAQTANAKAD 21 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 88
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=58.29 E-value=72 Score=26.16 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=55.0
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
.||+.+..+|.+...+.+.......++.+.+.-+..|+..-.......|.|+..++..=.....-+.-|
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777777777788888888888889999999999999999999999999999888665555544444
No 89
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=57.88 E-value=92 Score=26.83 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=19.1
Q ss_pred cchHHHHHHHHHHHHHh-hhhcC
Q 025130 53 NFTDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~Lass 74 (257)
.+-.+|+.+++.|.+|| .++.+
T Consensus 69 ~dr~ai~~E~~~l~~~i~~iaNt 91 (239)
T 3pwx_A 69 QDRSGMITELKSYRDSIESSFNA 91 (239)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 45688999999999999 88875
No 90
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=57.69 E-value=59 Score=24.55 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
++.+|..+|.+.+..++.+|.+. +.|-.+.- ..+..-+.++...++.|-..+..+=.|+
T Consensus 13 sFN~A~~~i~~g~~tts~AL~ki--------QdVVN~q~-------------~aL~~L~~qL~~NFgAISssi~dIy~RL 71 (77)
T 2bez_C 13 QFNKAISQIQESLTTTSTALGKL--------QDVVNQNA-------------QALNTLVKQLSSNFGAISSVLNDILSRL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45677777777777777777543 33322211 1112223444555555555666666666
Q ss_pred hhhhh
Q 025130 203 DSLAD 207 (257)
Q Consensus 203 ~~ie~ 207 (257)
+.+|+
T Consensus 72 d~leA 76 (77)
T 2bez_C 72 DKVEA 76 (77)
T ss_dssp HHHHH
T ss_pred Hhhhc
Confidence 66664
No 91
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=57.25 E-value=94 Score=26.76 Aligned_cols=106 Identities=9% Similarity=0.082 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh-----------HHHhhhhHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD-----------LFKVEHNLKD 190 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d-----------~~~i~~dv~~ 190 (257)
..+...+..+-.-|+.+.++=..-..+|..-|+....+.-+...-....+.++...+.. ++.+..++..
T Consensus 20 ~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~ 99 (189)
T 2v71_A 20 MKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ 99 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666555555565555555555555555555555555444433 3334555666
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhccc
Q 025130 191 LQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKK 227 (257)
Q Consensus 191 v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~ 227 (257)
++.....|-.+|-.+|-..|--.+-....|.-+...-
T Consensus 100 l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 100 TRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence 6666777777777777777666666666666555433
No 92
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=57.16 E-value=20 Score=27.67 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHH
Q 025130 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYL 218 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (257)
|.++...+.+..++-..+..-|.+=.+-+.+|...++....-|+.=...+..-...|..+..-.++
T Consensus 23 I~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i 88 (109)
T 3hd7_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 88 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccee
Confidence 555666666666666666666666666666666666666555555555555444455554444443
No 93
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=56.74 E-value=50 Score=29.44 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH--------HH
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ-NLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK--------DL 191 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~-~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~--------~v 191 (257)
+++..+.-+.+..++|.+...|...=..+..+|+ +++.=-....+++.+++.+|.+.+.++.-.+.|+. .|
T Consensus 164 ~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l 243 (273)
T 3s84_A 164 KKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQL 243 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q ss_pred HHHH----Hhhhhhhhhhh
Q 025130 192 QSMI----YCLDGKIDSLA 206 (257)
Q Consensus 192 ~~~V----~~Le~Ki~~ie 206 (257)
++.+ .+++++++-+|
T Consensus 244 ~~~l~~~~~~~~~~~~~~~ 262 (273)
T 3s84_A 244 RQKLGPHAGDVEGHLSFLE 262 (273)
T ss_dssp HHHHSCC------------
T ss_pred HHHhCcchhhHHhhhhHHH
No 94
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.52 E-value=78 Score=25.62 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=30.6
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.+.|+.++..+.+.+.=....+.+..++...++....+++.++.-+..||.++.
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555556666666666777777777777665
No 95
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=56.41 E-value=12 Score=22.76 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHH
Q 025130 169 DIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+.++||.++++.+..+.++++.+
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 56788888887777766666554
No 96
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=56.36 E-value=50 Score=24.67 Aligned_cols=31 Identities=13% Similarity=0.122 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhHHHhHHH
Q 025130 186 HNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
.+++.=..++..++.|+++...+-..+|.-+
T Consensus 51 ~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~ 81 (87)
T 1l4a_D 51 NEIGSQNRQVDRIQQKAESNESRIDEANKKA 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555444444444433
No 97
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=56.12 E-value=94 Score=26.43 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=9.2
Q ss_pred hhHHHhhhhHHHHHHHHHhhhhhh
Q 025130 179 DDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
.....+...++.+...+..|....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~ 123 (309)
T 2ch7_A 100 EVTRMISNSAKDVERVVESFQKGA 123 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444333333
No 98
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=56.10 E-value=59 Score=24.07 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=24.8
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
.|..||..+...|++...=....+.++.-+.+-+.-=-+|+..+++
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq 63 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4666666666666666666666665555555444433334444433
No 99
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=56.00 E-value=21 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 025130 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEI 166 (257)
Q Consensus 137 qVs~sL~~tKkhLsqRI~~vd~kld~~~ei 166 (257)
.+-+.+++-...|..||..+..|||...+.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888999999999999976553
No 100
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=55.95 E-value=28 Score=36.75 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=5.9
Q ss_pred hHHHHHHHHH
Q 025130 55 TDAIKDQLNR 64 (257)
Q Consensus 55 ~d~L~aQV~~ 64 (257)
...+..|++-
T Consensus 697 ~~~V~~QLr~ 706 (1184)
T 1i84_S 697 AHLVLEQLRC 706 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4456667665
No 101
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.25 E-value=43 Score=24.90 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=22.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHH
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV 174 (257)
.++|++ +.++.++|..--.+|.+ ||+.++..|++-.+..+..+.++
T Consensus 15 ~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 15 IEGRGS-LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 66666666665544443 45555555555544444444443
No 102
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=54.66 E-value=90 Score=25.74 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH-------HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR-------KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 136 eqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~-------~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
+.++..+..+-..|.....+|...+++...+++.+. +.+.+++..++....-...|..+=..|+..|.+
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444555555555555555555555444443 233444444444444444444444455555443
No 103
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=54.49 E-value=76 Score=24.85 Aligned_cols=72 Identities=8% Similarity=0.120 Sum_probs=54.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhh--HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNL--NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~v--d~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
...+..+.+.+.-+..|..+|+.. -+.+|++..-+...++.|++.-.-|-. +|+..-+..|..|..+++...
T Consensus 31 E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp~--YD~R~~q~~i~~L~~~l~e~r 104 (111)
T 2l3l_A 31 ENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLAA--YDLRQGQEALARLQAALAERR 104 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777787766 455777777777778888877765554 889999999999999888654
No 104
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=54.46 E-value=56 Score=23.35 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=23.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~ 164 (257)
.+|+++...+..+...+.+.+++|...++...
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~ 42 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAVID 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777776653
No 105
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.03 E-value=52 Score=27.67 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhhhhhhhh
Q 025130 188 LKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~ 207 (257)
++.+++-...|--.+..+|.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344434444433443333
No 106
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.60 E-value=1.5e+02 Score=28.09 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=10.0
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 183 KVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.+.+++..+..++..-+..|.+++.
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~ 112 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTD 112 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3333444444433333334444443
No 107
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=52.53 E-value=59 Score=30.53 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHH----HHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIR----KNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~----~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
+-..+|.+..+++.+..+ .++++++|. ++..++...+..++.+++.+......+|.+
T Consensus 33 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTE---RNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666544 445566664 333333433344444444443333333333
No 108
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=52.18 E-value=55 Score=22.51 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhhhHHHh
Q 025130 165 EISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 165 eis~~i~~eV~~v~~d~~~i 184 (257)
.++.+++.-++.++.-.+.+
T Consensus 66 ~~shel~tpl~~i~~~~e~l 85 (114)
T 3zcc_A 66 GVSHDLRTPLTRIRLATEMM 85 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HhhHHHcChHHHHHHHHHHH
Confidence 34444444444444444333
No 109
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=52.09 E-value=87 Score=24.84 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVE 175 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~ 175 (257)
+..|.++++.++.++++..++.+.+...+.
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 110
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=52.01 E-value=81 Score=24.46 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=53.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhH-HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLN-DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd-~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
+...+++|++.-+.|+..=..|..+.++|+ +.=++........++-+..++.-.+.....|.-++..++-||.
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 456789999999999999999999999998 4444445555555555666666666666777777777766664
No 111
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=51.97 E-value=72 Score=27.13 Aligned_cols=33 Identities=6% Similarity=-0.068 Sum_probs=20.4
Q ss_pred hhhhhhhHHHhHHHHHHHHHhhcccCCChHHHH
Q 025130 203 DSLADKQDITNIGMYLLCNFVDGKKGRTTESMQ 235 (257)
Q Consensus 203 ~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~~q 235 (257)
-.+-+.......-||+|.+.+....-.++.+++
T Consensus 118 l~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK 150 (174)
T 2p22_A 118 YNLVAQDYALTDTIECLSRMLHRGTIPLDTFVK 150 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 333344455567799999988754444555654
No 112
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=51.30 E-value=65 Score=30.64 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
|-..+|.+..+++.+..+. ++++++|..- ..-.+|.+.+...+..+..-+..||.++..++.
T Consensus 36 l~~~~r~~~~~~~~l~~~~---n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHER---NKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666766666665544 4555555531 011123333334444444444444444444443
No 113
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=51.29 E-value=67 Score=23.27 Aligned_cols=68 Identities=9% Similarity=0.128 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHH------------HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEK------------QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~------------~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
+|++....+.....+|.+.++.|+..++. ..+....-.....++..-|..|..-+.........-|.+
T Consensus 11 ~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~d~~ 90 (101)
T 3fav_A 11 TLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRADEE 90 (101)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555544433 233344444445555555555555555554444444443
No 114
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=51.17 E-value=2.1 Score=32.37 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=10.2
Q ss_pred hheecccccceee
Q 025130 13 LMLAGLGYTGTIL 25 (257)
Q Consensus 13 ~iLvGAG~~GSvl 25 (257)
+++||||++|..+
T Consensus 5 V~IIGaGpaGL~a 17 (336)
T 3kkj_A 5 IAIIGTGIAGLSA 17 (336)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 5789999988644
No 115
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=51.00 E-value=49 Score=26.03 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=14.0
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025130 176 EACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
++...+..-..||..++..|..| +|.
T Consensus 67 DlE~kv~kq~yEI~eL~~rV~dl-gKf 92 (106)
T 1j1d_B 67 DLQEKFKQQKYEINVLRNRINDN-QKV 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred hHHHHHHhhhHHHHHHHHHHHHh-cCc
Confidence 33334444556777777777777 554
No 116
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.84 E-value=46 Score=23.18 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=11.0
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 152 RIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
+|+.|..++++...=..+++.+|..++
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333333333
No 117
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=50.78 E-value=51 Score=26.23 Aligned_cols=10 Identities=40% Similarity=0.465 Sum_probs=5.6
Q ss_pred eeeccCcchh
Q 025130 107 WWKGLSFADL 116 (257)
Q Consensus 107 wWKGws~sDl 116 (257)
.--|+|+.|+
T Consensus 56 r~~G~sL~eI 65 (142)
T 3gp4_A 56 RRAGLSIEAL 65 (142)
T ss_dssp HHTTCCHHHH
T ss_pred HHcCCCHHHH
Confidence 3446666665
No 118
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.32 E-value=94 Score=24.68 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~ 163 (257)
.|...++.+..-+|+.-+.+...++.-..-|..|.+.+++.
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~l 47 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 47 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 119
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.29 E-value=36 Score=33.07 Aligned_cols=63 Identities=17% Similarity=0.082 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
|-..+|.+..+++.+..+. ++++++|..- ..-.+|.+.+..++..+..-+..||.++..++..
T Consensus 38 ld~~~r~~~~~~~~l~~~r---n~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKL---NSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777766554 4455555321 1122333344444444444444444444444443
No 120
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=49.48 E-value=67 Score=24.12 Aligned_cols=53 Identities=9% Similarity=0.290 Sum_probs=24.1
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.+|++++...++......-.+...+..++ .||..++-.++.+...|..+...|
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq-------~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQ-------SDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555554433333333333444444444 444444444444455555554444
No 121
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.35 E-value=83 Score=23.78 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=23.9
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
..|+.||..+...+|...+-....+..+.+.....+.-..+|.++++.+.-||
T Consensus 47 ~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 47 QGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444444444444444444444444444445555544444443
No 122
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=49.11 E-value=1.6e+02 Score=26.94 Aligned_cols=34 Identities=9% Similarity=0.294 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
.|..|...|+.|-..+.+..+-++.+.+++..-+
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~ 150 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLR 150 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444444444444333
No 123
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=48.00 E-value=97 Score=26.73 Aligned_cols=103 Identities=12% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh----------hhhHH
Q 025130 122 KSMATAVSNLN--KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV----------EHNLK 189 (257)
Q Consensus 122 r~ms~Av~sv~--kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i----------~~dv~ 189 (257)
|.|.++...++ +.|.+..+.|-.|+.+|.-=++.-...=++.....+.+.....++...+..+ .-+.+
T Consensus 26 R~Lh~sl~~l~~d~~l~~a~~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~~~~~~l~~~~~~l~~~w~~l~~~~~~~~ 105 (214)
T 1kmi_Z 26 RMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLA 105 (214)
T ss_dssp HHHHHHHHHHTHHHHHHHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHH
T ss_pred HHHHHHHHHcCCChHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCHH
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhh
Q 025130 190 DLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
.++..+...++.+..++..-+.++..+.-+-....
T Consensus 106 ~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~Aqd 140 (214)
T 1kmi_Z 106 DARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQD 140 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 124
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=47.87 E-value=49 Score=24.44 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHh
Q 025130 55 TDAIKDQLNRLKFEC 69 (257)
Q Consensus 55 ~d~L~aQV~~L~~El 69 (257)
...+..|+..|..|+
T Consensus 17 ~~~l~~q~~~l~~~~ 31 (107)
T 1fxk_A 17 AQAISVQKQTVEMQI 31 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666666
No 125
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=47.83 E-value=67 Score=22.28 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=25.7
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHH
Q 025130 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
|..++.=-..||.+++.=..++..|+.++++...+=..++.-+.
T Consensus 19 v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~ 62 (66)
T 1n7s_D 19 IGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333556666666666666666666666666655555443
No 126
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=47.66 E-value=1.8e+02 Score=28.64 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=52.9
Q ss_pred chhHHHhHh--hHHHHHHHHHHhhHHHHHHHHHHHH-----------------------------HHHHHHHhhHHhHHH
Q 025130 114 ADLMYVTRK--SMATAVSNLNKHLESVTEALTVAKK-----------------------------HLTQRIQNLNDKVEK 162 (257)
Q Consensus 114 sDlMfVTkr--~ms~Av~sv~kqLeqVs~sL~~tKk-----------------------------hLsqRI~~vd~kld~ 162 (257)
.|-+|+.-| ++.++...+.+.+++..+..+..++ +++++-..++..+.=
T Consensus 329 ~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~i 408 (671)
T 1mqs_A 329 NDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNI 408 (671)
T ss_dssp SCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 799999888 7889999999999988887654332 566777778888888
Q ss_pred HHHHHHHHHH----HHHHhhhhH
Q 025130 163 QNEISKDIRK----NVEEACDDL 181 (257)
Q Consensus 163 ~~eis~~i~~----eV~~v~~d~ 181 (257)
..+|.+.|++ ++.++..++
T Consensus 409 a~~l~~~i~~~~l~~~~e~EQ~l 431 (671)
T 1mqs_A 409 FAALLSQLESKSLDTFFEVEQDP 431 (671)
T ss_dssp HHHHHHHHHTTTCHHHHHHTSCC
T ss_pred HHHHHHHHhHhhHHHHHHHHHHH
Confidence 8888888873 567777666
No 127
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=46.99 E-value=72 Score=22.38 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
..+..+..+..-|..|...+.......+.-|.+
T Consensus 57 ~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~d~~ 89 (97)
T 2vs0_A 57 QLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQQ 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 128
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=46.97 E-value=88 Score=23.39 Aligned_cols=23 Identities=4% Similarity=0.160 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 025130 134 HLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~v 156 (257)
.|.++.+.+.++|.-+..-||.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kv 28 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKV 28 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444
No 129
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=46.67 E-value=74 Score=22.47 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=17.2
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 173 NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+|.....-++.....-..=++.+..||.|+.+.+
T Consensus 28 eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 28 EVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3443333334332222222667777777776554
No 130
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=46.55 E-value=1e+02 Score=24.07 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
..-|.+|.-.|+++-.-+|+.+.=-+.=...=..+..|+..++.|++...-.=-.||.++.++..-=+|
T Consensus 33 ~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 33 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555444321111111123445566667777777777777788888887664443
No 131
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=46.35 E-value=1.2e+02 Score=25.40 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
.++...++.|-..+..+=.+++.+|+.+.
T Consensus 64 ~qL~~nFgAISssi~dIy~rLd~leAdaQ 92 (149)
T 1wyy_A 64 KQLSSNFGAISSVLNDILSRLDKVEAEVQ 92 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666777777776543
No 132
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=45.81 E-value=1.3e+02 Score=29.22 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=52.3
Q ss_pred cchhHHHhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh---HHHHHHHHHHHHHHHHHhhhhHH-----Hh
Q 025130 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK---VEKQNEISKDIRKNVEEACDDLF-----KV 184 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~k---ld~~~eis~~i~~eV~~v~~d~~-----~i 184 (257)
+.|+|.==.++..+-+..|-..|++++.+=+.|+..+..==+.+... ..+..-+++.=+++|.+++.-.. .+
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~ 161 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNI 161 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccc
Confidence 78999988999999999999999998877666654332211111111 00001111111223333222222 35
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
-..|+.++.+++.+..||..++.
T Consensus 162 ~~~i~~l~~~~~~~~~~i~~l~~ 184 (461)
T 3ghg_B 162 PTNLRVLRSILENLRSKIQKLES 184 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777765543
No 133
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=45.76 E-value=23 Score=27.34 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=21.5
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (257)
..|..||+.|..|+++|..-....++.|.+---+..+..-|+
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDI 44 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 44 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 356778888888887776666655555543333334444444
No 134
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=44.59 E-value=1.5e+02 Score=25.23 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHH-------HHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 138 VTEALTVAKKHLTQRIQNLNDKVEKQN-------EISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 138 Vs~sL~~tKkhLsqRI~~vd~kld~~~-------eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
....|...|..|.+-+..|...|++=. +++...+..+..++.++++...-...+..-...|-.||..+|.
T Consensus 56 ~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 56 RNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554332 3444444455555555555555555555555566666665554
No 135
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=44.56 E-value=2.2e+02 Score=27.23 Aligned_cols=86 Identities=14% Similarity=0.192 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh------------------HHHhhhhHHHHHHHHHhhh
Q 025130 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD------------------LFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 138 Vs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d------------------~~~i~~dv~~v~~~V~~Le 199 (257)
+.+.|....+.....|+.|...|++....+..+.+-|..++.- .+.+-+++..+...+...+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5667777777777788888888888877777777777766653 2335556666666676667
Q ss_pred hhhhhhhhhhHHHhHHHHHHHHHh
Q 025130 200 GKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 200 ~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
..|..++..-+.-+.-|..|-+-+
T Consensus 105 ~~i~~l~~~~~~~~~~i~~L~~~v 128 (411)
T 3ghg_C 105 SSIRYLQEIYNSNNQKIVNLKEKV 128 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766555555666664433
No 136
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.55 E-value=77 Score=23.65 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=5.2
Q ss_pred HHHHHhhHHhHHH
Q 025130 150 TQRIQNLNDKVEK 162 (257)
Q Consensus 150 sqRI~~vd~kld~ 162 (257)
..+|+.+..+++.
T Consensus 83 e~~i~~le~~~~~ 95 (117)
T 2zqm_A 83 EVRLNALERQEKK 95 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 137
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.41 E-value=1e+02 Score=23.44 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=14.3
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
+.++........+...+|.+++..+..||.-++.
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444443
No 138
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=44.34 E-value=25 Score=31.07 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=48.9
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEA-------LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~s-------L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (257)
+-++|-..|...++..|..+.+. +...=.++.+||++|++++|+...=.-.-..|+--+ +..+.--..++
T Consensus 36 AD~kSTQ~AId~It~KlN~liek~N~qf~~i~~EF~e~e~rI~~l~~~vdD~~~DvwsyNaELLVlleNq~Tld~~Ds~v 115 (222)
T 2wrg_I 36 ADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNV 115 (222)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCCCSCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHhccchhhhHHHHH
Confidence 34688899999999999888654 444456788999999999988743222222332222 23333344555
Q ss_pred HHHHHHHH
Q 025130 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
.++++.|+
T Consensus 116 ~~L~ekvr 123 (222)
T 2wrg_I 116 RNLYEKVK 123 (222)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 139
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=43.99 E-value=71 Score=24.32 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 184 VEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
-..||..=+..|..++.+|..|..
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777777666654
No 140
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.97 E-value=1.3e+02 Score=35.96 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=9.1
Q ss_pred CcchHHHHHHHHHHH
Q 025130 30 KLPELLRELQSLVER 44 (257)
Q Consensus 30 kLsd~~g~lq~~lk~ 44 (257)
.+.|+-.+|+.+++.
T Consensus 1684 ~~~~f~eDLk~l~~~ 1698 (3245)
T 3vkg_A 1684 KSSDFDDDLRMLLKR 1698 (3245)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 456666666666643
No 141
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Probab=43.65 E-value=9.3 Score=33.76 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=48.6
Q ss_pred HhHhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTE-------ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~-------sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (257)
+-++|-..|...+++.|..+.+ ++...=.+|.+||++|++|+|+...=.-.-..|+--+ +..+.--..++
T Consensus 36 AD~kSTQ~AId~It~KlN~~iekmN~qfe~v~~ef~~~e~ri~~l~~~vdD~~~DvwsyNaELLVlleNq~Tld~hDsnv 115 (221)
T 1mqm_B 36 ADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLADSEM 115 (221)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCEECSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHhccchhhHHHHHH
Confidence 4568889999999999888843 4555556788999999999998743222222332222 22333334455
Q ss_pred HHHHHHHH
Q 025130 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
.++.+.|+
T Consensus 116 ~nL~ekvr 123 (221)
T 1mqm_B 116 NKLFEKTR 123 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 142
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.44 E-value=1.1e+02 Score=23.23 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=8.2
Q ss_pred HHHHHHHhhhhHHHhhhhHH
Q 025130 170 IRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~ 189 (257)
|++|++.++.+.-.+.++++
T Consensus 29 i~EELs~vr~~ni~~eskL~ 48 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLR 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 143
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Probab=42.43 E-value=36 Score=29.10 Aligned_cols=46 Identities=13% Similarity=0.339 Sum_probs=36.5
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL-------~~tKkhLsqRI~~vd~kld~~~ 164 (257)
+-++|-.+|+..++..|..+.+.. ...=.++.+||.+|+.++|+..
T Consensus 36 ad~~sTQ~aid~It~K~N~~iekmn~qf~~i~~ef~e~e~ri~~l~~~vdD~~ 88 (176)
T 1jsd_B 36 ADSDSTQKAIDKITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDDQI 88 (176)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999998887543 3334578899999999998875
No 144
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=42.29 E-value=73 Score=23.72 Aligned_cols=59 Identities=7% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
..+.-+-++.|...+..++.++..|-+|+..=-.=+.+|..+++.+...+..--.|+..
T Consensus 25 e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 25 EDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666677777777777666666666666666665555555555443
No 145
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=42.22 E-value=1e+02 Score=22.81 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
+...+-.+|+.+..++...++....+ ......++..++.|+...-.|-+.+-.+=..||..|.
T Consensus 11 q~~~Le~~l~e~E~~~~~~l~~~q~~-------i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 11 QLAAKEAKLRDLEDSLARERDTSRRL-------LAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444455555555555444444433 3344666777777777766666666555555665543
No 146
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.08 E-value=69 Score=23.57 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHhhHH
Q 025130 122 KSMATAVSNLNKHLES 137 (257)
Q Consensus 122 r~ms~Av~sv~kqLeq 137 (257)
+...+|...+.+..+.
T Consensus 61 ~~~~e~~~~L~~~~e~ 76 (107)
T 1fxk_A 61 VAKDELTEELQEKLET 76 (107)
T ss_dssp ECHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3444444444444333
No 147
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.60 E-value=66 Score=30.08 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=5.2
Q ss_pred HHHHHHHHhhhh
Q 025130 189 KDLQSMIYCLDG 200 (257)
Q Consensus 189 ~~v~~~V~~Le~ 200 (257)
..+|..+..|.+
T Consensus 48 r~l~n~~~elkg 59 (403)
T 4etp_A 48 RTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC
Confidence 334444444443
No 148
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=41.56 E-value=47 Score=22.80 Aligned_cols=37 Identities=14% Similarity=0.426 Sum_probs=21.3
Q ss_pred HHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHhhHHhH
Q 025130 124 MATAVSNLNK----HLESVTEALTVAKKHLTQRIQNLNDKV 160 (257)
Q Consensus 124 ms~Av~sv~k----qLeqVs~sL~~tKkhLsqRI~~vd~kl 160 (257)
|..+|.++=. +.+.+|+.|-.-=...+.|||.|+..+
T Consensus 7 Lt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 7 LTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 4444444444 344566666666777888888777654
No 149
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=41.51 E-value=49 Score=26.83 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=23.6
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (257)
..|..||+.|-.|+++|..-....++.|.+=--+..+..-|+
T Consensus 25 edLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDI 66 (119)
T 1lwu_A 25 RELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDI 66 (119)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346678888777777776655555555433333333343343
No 150
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=41.35 E-value=58 Score=30.56 Aligned_cols=63 Identities=21% Similarity=0.431 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
+-..+|.+..+++.+..+ .++++++|..- ..-.+|.+.+...+..+..-+..||.++..++.+
T Consensus 35 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSE---RNKLSKEIGKL-KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEE 97 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHTTGG-GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777776666554 45566666531 0011233344444444444444445555544443
No 151
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=41.17 E-value=62 Score=22.30 Aligned_cols=10 Identities=30% Similarity=0.704 Sum_probs=4.3
Q ss_pred HHHHHHhhHH
Q 025130 149 LTQRIQNLND 158 (257)
Q Consensus 149 LsqRI~~vd~ 158 (257)
+++|++.++.
T Consensus 35 vt~rle~lEn 44 (47)
T 1aq5_A 35 VAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 152
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=41.16 E-value=82 Score=21.41 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=6.8
Q ss_pred HHHHHHHHHh-hhhc
Q 025130 60 DQLNRLKFEC-QRAS 73 (257)
Q Consensus 60 aQV~~L~~El-~Las 73 (257)
..+++|...+ .++.
T Consensus 9 ~pl~~l~~~~~~i~~ 23 (115)
T 3zrx_A 9 RPIIELSNTFDKIAE 23 (115)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 3445555555 4443
No 153
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=41.15 E-value=1.2e+02 Score=27.03 Aligned_cols=55 Identities=11% Similarity=0.262 Sum_probs=43.3
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
++.=+.++-...+-.....-.++....|+....-+|..++..|.+.|.+|+.|+.
T Consensus 93 l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 93 VDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 3344444555555566667778999999999999999999999999999999875
No 154
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=41.07 E-value=1.2e+02 Score=23.20 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=40.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025130 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 133 kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.+|.++++++...|-+|..-|+.=..|.++ ..++.++++.+-..-+++ ||.++.+|
T Consensus 33 ~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~-----------L~~mn~Kls~a~rlYD~l------LE~~l~~~ 88 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARLNYALNDKAQKYNT-----------LIEMNGKISEIMNIYDRL------LEQQLQSI 88 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------HHHHHHhc
Confidence 578899999999999998888877777554 455555666665666655 67776654
No 155
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=41.01 E-value=1.3e+02 Score=23.47 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~ 155 (257)
|+...+-+-.+.+.+...|..==+.|.++|+.
T Consensus 34 Ls~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~ 65 (96)
T 1t3j_A 34 MATTFARLCQQVDMTQKHLEEEIARLSKEIDQ 65 (96)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443
No 156
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.91 E-value=53 Score=30.33 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHhhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~ 203 (257)
...|+.+++.|..|+.++.
T Consensus 39 ~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 39 QQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444454443
No 157
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=40.90 E-value=1.2e+02 Score=23.14 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=37.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 127 Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
-.+++-++...+-.+|+.++.++...++.....+ .....++..++.|+..--.|-+.+-.+=..||..|.
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i-------~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRML-------TDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666666665555555544444 344566666666666666666666555555665443
No 158
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=40.60 E-value=17 Score=31.12 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=36.0
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHhhHHhHHHHH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEA-------LTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~s-------L~~tKkhLsqRI~~vd~kld~~~ 164 (257)
+-++|-.+|+..++..|..+.+. +...=.++.+||.+|++++|+..
T Consensus 36 ad~ksTQ~aId~It~K~N~~iek~n~qfe~i~~ef~~~e~rI~~l~~~vdD~~ 88 (176)
T 2rft_B 36 ADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLR 88 (176)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCCCCCCCCCSSCCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999998888542 33344488999999999998874
No 159
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=40.58 E-value=1.4e+02 Score=23.80 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
+.+++...++.+++.|+.=.+--++=-|..++-.+..+.+|.++.+-+..-...+..++..+...
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333444555666667777777777777666666666666544
No 160
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=40.07 E-value=30 Score=30.04 Aligned_cols=15 Identities=7% Similarity=0.295 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhHHhH
Q 025130 146 KKHLTQRIQNLNDKV 160 (257)
Q Consensus 146 KkhLsqRI~~vd~kl 160 (257)
|..+.++++.+-.+|
T Consensus 149 r~kl~~~veelk~~l 163 (243)
T 2a01_A 149 RDRARAHVDALRTHL 163 (243)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 161
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=39.34 E-value=64 Score=27.25 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhh
Q 025130 185 EHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
-+.+++.+..+..|+.|+.+++.
T Consensus 68 i~n~~sA~~~~d~lekKl~~aq~ 90 (158)
T 3tul_A 68 IKKTDTAKSVYDAATKKLTQAQN 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665554
No 162
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=39.22 E-value=1.3e+02 Score=28.85 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=46.3
Q ss_pred cchhHHHhHh--hHHHHHHHHHHhhHHHHHHHHHHH-----------------HHHHHHHHhhHHhHHHHHHHHHHHHH-
Q 025130 113 FADLMYVTRK--SMATAVSNLNKHLESVTEALTVAK-----------------KHLTQRIQNLNDKVEKQNEISKDIRK- 172 (257)
Q Consensus 113 ~sDlMfVTkr--~ms~Av~sv~kqLeqVs~sL~~tK-----------------khLsqRI~~vd~kld~~~eis~~i~~- 172 (257)
-.|-+|+.-| +++++...+.+.+++..+.-...+ -+++++-..++..+.=..++.+.+++
T Consensus 280 ~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~~ 359 (591)
T 1epu_A 280 EKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQH 359 (591)
T ss_dssp GGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC--------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHhccCHHHHHHHHHHHHHHHHHhccccccccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599998777 788999999988888877643322 35566666777777777777777764
Q ss_pred --HHHHhhhhH
Q 025130 173 --NVEEACDDL 181 (257)
Q Consensus 173 --eV~~v~~d~ 181 (257)
++.++..++
T Consensus 360 l~~~~~~EQ~l 370 (591)
T 1epu_A 360 VDKLCKVEQDL 370 (591)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 344444444
No 163
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=38.71 E-value=73 Score=22.52 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=32.2
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH----HHhHHHHHHHHHh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD----ITNIGMYLLCNFV 223 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd----~tn~GV~~Lc~f~ 223 (257)
+++..+..++..+..=+..+..+|..=+.-|++||.|-+ .+..|...|-.+.
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 61 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAA 61 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666677777777777888877644 4445555554443
No 164
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=38.60 E-value=94 Score=21.66 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025130 158 DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 158 ~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
.++...++-.+.|-+-|.++...++.+.-=++.+|+-|.
T Consensus 4 ~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 4 GEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556667788888777887777777776654
No 165
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=38.32 E-value=53 Score=25.02 Aligned_cols=29 Identities=7% Similarity=0.311 Sum_probs=24.2
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKH 148 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkh 148 (257)
++.-+.+.|..+.-.|+.+.+||..+++.
T Consensus 37 ~~~El~~~l~el~e~l~DL~~SI~i~e~~ 65 (95)
T 2c5k_T 37 QEEEIQDILKDVEETIVDLDRSIIVMKRD 65 (95)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78888999999999999999998885544
No 166
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=38.27 E-value=19 Score=21.50 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.3
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALT 143 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~ 143 (257)
|+|-+++++..|+..+.+|-++|.
T Consensus 2 ~q~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999998888877764
No 167
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.59 E-value=86 Score=29.50 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
.|+..-+++.+|++.++.+..++.+..+..++++ -+-...-..+|..+..|.+.|
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l-------~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL-------FQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCE
Confidence 3444445555555555555555544444444443 332344455666666666654
No 168
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=37.50 E-value=1.1e+02 Score=29.53 Aligned_cols=20 Identities=0% Similarity=-0.125 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhHHhHH
Q 025130 142 LTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld 161 (257)
|-..+|.+..+++.+..+.+
T Consensus 42 ld~~~r~~~~~~~~l~~~rN 61 (484)
T 3lss_A 42 ADKKWRRTQFLTEASKKLIN 61 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556677777666665544
No 169
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=37.47 E-value=47 Score=32.60 Aligned_cols=84 Identities=12% Similarity=0.226 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
-+|..|--.|-|..+.+.+-+...+..+.. +|...++-|+..-... .-++|..-+.|++.+..++...+..+..+
T Consensus 43 G~lNra~v~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~--vi~qI~~n~~dI~~Lk~~~~~~~~~l~~~ 120 (487)
T 2bsg_A 43 GSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIE--ALAQIGINKKDISDLKTLTSEHTEILNGT 120 (487)
T ss_pred cccccchhhhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhccccHH--HHHHHHhhHHHHHHHhcchhhhhhhhhhh
Confidence 356666677888888888888888777766 4444444444322221 23445555555555555555555556666
Q ss_pred hhhhhhhhh
Q 025130 199 DGKIDSLAD 207 (257)
Q Consensus 199 e~Ki~~ie~ 207 (257)
..++++|++
T Consensus 121 ~~~~~ei~~ 129 (487)
T 2bsg_A 121 NNTVDSILA 129 (487)
T ss_pred ccchHHHHh
Confidence 666665554
No 170
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=37.42 E-value=74 Score=26.05 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025130 160 VEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 160 ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
|.+.+++++.+.+++..+..++.+|-.|..+
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444555555555555555555555555544
No 171
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=36.83 E-value=1.1e+02 Score=21.71 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q 025130 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN 173 (257)
Q Consensus 125 s~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e 173 (257)
++=+++|.-+|+.|.+.....|+. |..||.++-+.++++..+-+-
T Consensus 8 ~eRve~m~~~l~Evnekv~~ik~s----L~~LD~~lg~Lqdlsal~v~t 52 (56)
T 3e7k_A 8 FERVEQMSIQIKEVGDRVNYIKRS----LQSLDSQIGHLQDLSALTVDT 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHH
Confidence 445788888999999988888885 457888888888888776543
No 172
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=36.67 E-value=26 Score=29.96 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=49.4
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALTV-------AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~~-------tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (257)
+.++|-..|...++..|..|.+.... .=.++.+||.+|++|+|+...-.=.-.-|+-.+ +..+..-.+.|
T Consensus 36 AD~kSTQ~AId~It~KvN~iiekmn~qf~~v~~ef~~~e~ri~~l~~kvdD~~~DvwsYnAELLVllENq~TlD~hDsnv 115 (174)
T 3ku3_B 36 ADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNV 115 (174)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHhcccccchhhHHH
Confidence 57899999999999999888765432 224678899999999998754333333333222 23333344555
Q ss_pred HHHHHHH
Q 025130 189 KDLQSMI 195 (257)
Q Consensus 189 ~~v~~~V 195 (257)
.++.+.|
T Consensus 116 ~nLyekv 122 (174)
T 3ku3_B 116 KNLYDKV 122 (174)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 173
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=36.64 E-value=1.1e+02 Score=21.60 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.+..+..-.+++.....++..++..+..|+..|+++.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555666777888889999999999888653
No 174
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=35.93 E-value=37 Score=27.40 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHHHHHh-hhhcCCCeEEEeCCCCCcceeehhhhhHhhhhh-----eeeeeeeccCcch
Q 025130 62 LNRLKFEC-QRASSGQIFVRNENSGGNATSLMIPAATLGALG-----YGYMWWKGLSFAD 115 (257)
Q Consensus 62 V~~L~~El-~Lassr~iTVvn~~sGg~~s~~ivpaA~vGavG-----YgYmwWKGws~sD 115 (257)
+++|++.+ .+...+.++.+-|.||+++|.++ -+..|.+. .||+...|.-++.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~--~~l~~~~~~~g~~~g~v~~d~~~~~~ 65 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS--NPLAAALSAQGLPAEVVPMDGFHLDN 65 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH--HHHHHHHHHTTCCEEEEESGGGBCCH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH--HHHHHHHhhcCCceEEEecCCCcCCH
Confidence 34556666 55334457778888887787665 23445554 7888888876654
No 175
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=35.88 E-value=2e+02 Score=24.36 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
...+.+|++.|..+-+.....+..-+..+.+.. ++.+|..+++.+..-+...+..|.+
T Consensus 187 ~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~~~l~~Wl~~~~~~l~~ 244 (323)
T 3edv_A 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQIEA 244 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456666777777666666666666666665554 3555666666665555555554443
No 176
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=35.84 E-value=64 Score=27.92 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhh
Q 025130 160 VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 160 ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
++-.-+|.+.|++-+.+-.-|-++|-.-=.+|++.|..+-..+.. ...+...-.-++.+|+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ir~~I~~~re~L~~-gysE~~~~~ilFAlcAlID 70 (185)
T 4ack_A 7 IEIILDIIKTTREIIEDNDNDNEKISYHRNNIRKSIFFLQEELLE-KYSETVCKYIVFPLLAYVD 70 (185)
T ss_dssp HHHHHHHHHHHHHHTC---CCTTHHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 344567888888888888888888888888888888888777777 6677777788899999984
No 177
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.43 E-value=2.8e+02 Score=26.78 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 025130 143 TVAKKHLTQRI 153 (257)
Q Consensus 143 ~~tKkhLsqRI 153 (257)
++-+..+++.|
T Consensus 90 ~~~rn~~sk~i 100 (501)
T 1wle_A 90 EEEKEAVTEAV 100 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 178
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=35.32 E-value=1.3e+02 Score=26.62 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
..|++|..|+..+-.++.....--+.|++|....+
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~ 198 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMV 198 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333334444433333
No 179
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=35.30 E-value=90 Score=22.47 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=30.2
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHH--------HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIR--------KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~--------~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+..++..++=.|++.+++...-. +-..-++.-...+...+..++.+...|+.++...+.
T Consensus 8 ~I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 8 FIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555555666555554321 112333444455555666666666666666665554
No 180
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=35.20 E-value=1.2e+02 Score=21.47 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhh
Q 025130 186 HNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
.++++=+..+..++.|.+++..+
T Consensus 31 ~Eid~QN~~ldrI~~k~d~~d~r 53 (64)
T 3b5n_D 31 KELDSQQKRLNNIEESTDDLDIN 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444333
No 181
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=35.12 E-value=77 Score=23.92 Aligned_cols=22 Identities=5% Similarity=0.220 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVA 145 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~t 145 (257)
|+++..+++.-|.++.+.+..-
T Consensus 21 i~~g~~tts~AL~kiQdVVN~q 42 (77)
T 2bez_C 21 IQESLTTTSTALGKLQDVVNQN 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444433
No 182
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=35.07 E-value=64 Score=23.21 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
..+-.....+++.-|..|+.-++.-+.....-|.+
T Consensus 55 ~~~W~~~~~~l~~~L~~i~~~l~~a~~~y~~~d~~ 89 (96)
T 3h6p_C 55 QTQWNQALEDLVRAYQSMSGTHESNTMAMLARDGA 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443433
No 183
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=35.07 E-value=1.3e+02 Score=26.90 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~ 164 (257)
|..+|+.+...+..+......+-++|..+|++ .+|....
T Consensus 132 L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~--~~L~~Ll 170 (261)
T 3rkg_A 132 FINVMSALETDFKLHSQICIQILNDLENEVNR--LKLRHLL 170 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHH
Confidence 55677777777777888777888888876655 4555443
No 184
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} PDB: 3m5h_B* 3m5i_B* 3m5j_B* 4dj6_B* 4dj7_B* 4dj8_B* 4fqv_B 1ti8_B*
Probab=34.97 E-value=14 Score=31.81 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=49.7
Q ss_pred HhHhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh---hhHHHhhhhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTE-------ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC---DDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~-------sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~---~d~~~i~~dv 188 (257)
+.++|-..|...++..|-.|.+ ++...=.++.+||.+|++|+|++..=.=.-.-|+-.+- ..+..-...|
T Consensus 36 AD~kSTQ~AId~IT~KvN~iIeKmN~qf~~i~~Ef~eve~ri~~l~~kvdD~~~DiWsYnaELLVlLENq~TlD~hDsnv 115 (182)
T 3m5g_B 36 ADYKSTQSAIDQITGKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINWTRDAMTEIWSYNAELLVAMENQHTIDLADSEM 115 (182)
T ss_dssp ECHHHHHHHHHHHHHHHHHHSSCCCEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHhcccccchhhHHH
Confidence 6899999999999999888764 33334456789999999999987544434444433332 2333334445
Q ss_pred HHHHHHH
Q 025130 189 KDLQSMI 195 (257)
Q Consensus 189 ~~v~~~V 195 (257)
.++.+.|
T Consensus 116 ~nLyekv 122 (182)
T 3m5g_B 116 SKLYERV 122 (182)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 185
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.88 E-value=44 Score=30.85 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=7.1
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 025130 189 KDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie 206 (257)
++.+..+..|+.+|..++
T Consensus 36 ~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 36 RVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 186
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=34.86 E-value=1.4e+02 Score=22.20 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
..-|.+|..-|+++-.-+++.+.=-+.=...=+.+..|+..++.|++...-.=..||.|++++..--+
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444322222111223455566677778888888888899999998866433
No 187
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=34.65 E-value=1.6e+02 Score=22.95 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=5.1
Q ss_pred HHhhhhhhhhh
Q 025130 195 IYCLDGKIDSL 205 (257)
Q Consensus 195 V~~Le~Ki~~i 205 (257)
-..||.++...
T Consensus 69 kldLE~RLsKt 79 (101)
T 1d7m_A 69 RMELEARLAKT 79 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 33455555433
No 188
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.57 E-value=1.1e+02 Score=21.09 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=15.6
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~ 182 (257)
+|..+++.+..+=....+.-+.-++++..+++.++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 189
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=34.43 E-value=1.6e+02 Score=23.76 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=48.4
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH-----HH--H----HH------HHHhhhhHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISK-----DI--R----KN------VEEACDDLF 182 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~-----~i--~----~e------V~~v~~d~~ 182 (257)
.++.+..-+..+.++++...+++..--..+.++|...|+++|+...-.. .+ + .+ +..+-.|++
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~I~~~~~~lla~~~p~a~dlr~i~~~l~i~~dlE 91 (216)
T 2i0m_A 12 LEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARLLALQQPQVSDLRFVISIMSSCSDLE 91 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 4555666666666777777777765555666667666666665433211 11 0 11 334557888
Q ss_pred HhhhhHHHHHHHHHhhhh
Q 025130 183 KVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~ 200 (257)
+||+-..+|-..+..+..
T Consensus 92 RIgD~a~~Ia~~~~~~~~ 109 (216)
T 2i0m_A 92 RMGDHMAGIAKAVLQLKE 109 (216)
T ss_dssp HHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 888888877776665543
No 190
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=34.43 E-value=23 Score=29.77 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=11.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 025130 130 NLNKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 130 sv~kqLeqVs~sL~~tKkhLsqRI~~v 156 (257)
.+.+||.+--.+|++.-..+-+|+|.+
T Consensus 61 ~l~~qL~~nFgAISssi~dIy~rLd~l 87 (149)
T 1wyy_A 61 TLVKQLSSNFGAISSVLNDILSRLDKV 87 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444443
No 191
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=34.31 E-value=2.2e+02 Score=25.99 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=44.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
++.+.+.|+.+...+..-+.+..+=++.|.+=-+++.+=....+..+..+..-+..-+.|+..++.-++.+...|+
T Consensus 118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 118 GETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444444444444444444444455666666666666777777777777777777776
No 192
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=34.09 E-value=1.3e+02 Score=27.20 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHH
Q 025130 137 SVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 137 qVs~sL~~tKkhLsqRI~~vd~kld 161 (257)
+++...+..+..|...++.+-.+|.
T Consensus 100 ~l~~~~~~Lr~~L~~dlEelR~~L~ 124 (307)
T 2l7b_A 100 RLSKELQAAQARLGADMEDVCGRLV 124 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555444443
No 193
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=34.07 E-value=1.9e+02 Score=23.46 Aligned_cols=68 Identities=4% Similarity=0.136 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
..+.+.+.+.--+|+.++..|+....++. .|++.|..+|+....+.+--...+.++-.-..++...+.
T Consensus 90 ~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~ 160 (175)
T 4abx_A 90 MQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELA 160 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 56888888888999999999988777773 789999999888777766544333333333333333333
No 194
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.00 E-value=1.3e+02 Score=27.72 Aligned_cols=10 Identities=0% Similarity=-0.532 Sum_probs=6.0
Q ss_pred hhhheeeeee
Q 025130 99 GALGYGYMWW 108 (257)
Q Consensus 99 GavGYgYmwW 108 (257)
--+||||-+.
T Consensus 343 ~L~gyC~s~~ 352 (487)
T 3oja_A 343 ALKEQYRTVI 352 (487)
T ss_dssp HHHHHTCCCC
T ss_pred hHHHHhcChH
Confidence 3468886543
No 195
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.64 E-value=1.5e+02 Score=24.72 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHh
Q 025130 56 DAIKDQLNRLKFEC 69 (257)
Q Consensus 56 d~L~aQV~~L~~El 69 (257)
..|-..+.++|+||
T Consensus 16 s~LeD~L~~~R~el 29 (154)
T 2ocy_A 16 SHLEEQLNKSLKTI 29 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 34444555555555
No 196
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.31 E-value=78 Score=21.74 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=18.4
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+..++.|--++..|-+++..++..|...|.++|.
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3334444444555555666666666666666553
No 197
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=33.30 E-value=2.6e+02 Score=24.84 Aligned_cols=88 Identities=13% Similarity=0.212 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH------HHHHhh
Q 025130 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ------SMIYCL 198 (257)
Q Consensus 125 s~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~------~~V~~L 198 (257)
.+++..|+..|-.+...+.++-.++.++++..-..|-.. ..+.+.|...|+.=..+.++|..+. ..+..|
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~L 136 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSI----RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVL 136 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 467888888888888888888888888766655554433 2233445556655566666666665 355677
Q ss_pred hhhhhhhhhhhHHHhHHH
Q 025130 199 DGKIDSLADKQDITNIGM 216 (257)
Q Consensus 199 e~Ki~~ie~kQd~tn~GV 216 (257)
|..|.+.|.....+-..+
T Consensus 137 eqELvraEae~lvaEAqL 154 (234)
T 3plt_A 137 EQELVRAEAESLVAEAQL 154 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 777766666554444333
No 198
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.25 E-value=1.7e+02 Score=22.85 Aligned_cols=33 Identities=18% Similarity=0.485 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 025130 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK 172 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~ 172 (257)
+.|.+.|..|..+|..+..++++..+.......
T Consensus 72 ~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~ 104 (129)
T 2fxo_A 72 DQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444433333
No 199
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=33.09 E-value=6.8 Score=31.21 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHhhcccCCChHHHH
Q 025130 212 TNIGMYLLCNFVDGKKGRTTESMQ 235 (257)
Q Consensus 212 tn~GV~~Lc~f~~~~~~~~~~~~q 235 (257)
||+||.||.+|.+.-..-+|.-++
T Consensus 69 TnEGieyLR~yLhLP~eivPaTl~ 92 (105)
T 3u5c_K 69 TEEGVEYLREYLNLPEHIVPGTYI 92 (105)
T ss_dssp CHHHHHHHHHHTCCCSSCCSSCSC
T ss_pred chhhHHHHHHHhCCCchhcCcccc
Confidence 999999999999977777776654
No 200
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.90 E-value=1e+02 Score=24.46 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=11.0
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 183 KVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.+...+..++.....|+.+|+..+.
T Consensus 106 ~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 106 NVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555554443
No 201
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=32.60 E-value=1.2e+02 Score=21.15 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=27.2
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhH
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (257)
+++..+..++..+..=+..+..+|..=+.-|++||.|-+.|..
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 51 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666667777777778888876555543
No 202
>4f23_A Hemagglutinin, H16; sialic acid, glycolysation, membrane, viral P; HET: NAG; 1.70A {Influenza a virus} PDB: 4fiu_A*
Probab=32.58 E-value=43 Score=33.06 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=50.2
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH---HhhhhHHHhhhhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE---EACDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL-------~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~---~v~~d~~~i~~dv 188 (257)
|-++|=..|...++..|..+.+.. ...=.+|..||++|++|+|+...=.=.-..|+- |=+..+..-..+|
T Consensus 370 AD~kSTQ~AId~It~k~N~iiekmn~qf~~i~~ef~~~e~ri~~l~~~~~D~~~dvwsynaELlVlleN~~tld~~Dsnv 449 (515)
T 4f23_A 370 ADKTSTQKAINEITTKINNIIEKMNGNYDSIRGEFNQVEKRINMIADRVDDAVTDIWSYNAKLLVLIENDRTLDLHDANV 449 (515)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTCCSCCSCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcHHHHhhhccCcccchhhHHH
Confidence 578999999999999998887643 233346889999999999987322222222221 2223344445666
Q ss_pred HHHHHHHH
Q 025130 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
.++.+.|+
T Consensus 450 ~~L~ekvr 457 (515)
T 4f23_A 450 RNLHEQIK 457 (515)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655553
No 203
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=32.47 E-value=2.3e+02 Score=24.32 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhH
Q 025130 166 ISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv 188 (257)
+...+.+++.++|..++-+..++
T Consensus 104 l~~~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 104 FQKKWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 44444455555555554444444
No 204
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=32.36 E-value=1.3e+02 Score=21.01 Aligned_cols=30 Identities=7% Similarity=0.179 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~ 163 (257)
+|+++...+.....+|.+.++.|...++..
T Consensus 10 ~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 10 EIRAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555443
No 205
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=32.34 E-value=11 Score=32.03 Aligned_cols=33 Identities=6% Similarity=-0.148 Sum_probs=23.6
Q ss_pred HHHhHHHHHHHHHhhcccC-CChHHHHHHhhhcc
Q 025130 210 DITNIGMYLLCNFVDGKKG-RTTESMQEQLKLGE 242 (257)
Q Consensus 210 d~tn~GV~~Lc~f~~~~~~-~~~~~~q~~~k~~~ 242 (257)
-.||+||.||++|.+.-.. -+|.-++.+.+..+
T Consensus 67 ~LTnEGIeYLR~yLhLP~e~IVPaTlk~~~~~~~ 100 (162)
T 2xzm_7 67 YLNKEGCEYLKTKLGISADNVIPKTFKASNVNFI 100 (162)
T ss_dssp EECHHHHHHHHHHHCSSTTSCCCGGGSCCCCCCC
T ss_pred EEchHHHHHHHHHhCCCccccccchhccccCCCC
Confidence 3589999999999997776 66776543333333
No 206
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=32.33 E-value=1.9e+02 Score=22.93 Aligned_cols=73 Identities=21% Similarity=0.166 Sum_probs=49.0
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHH----HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRK----NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~----eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
+.|..+..++.-.+|+.+.=-.+-+. .++.++.++++....-+.++.-++.||-+=|.+|-....|..-+-.+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 44555555555544444443333333 36777888888888888888889999999888888887777665544
No 207
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=32.13 E-value=1.6e+02 Score=29.17 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=45.1
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh-------hHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHH
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACD-------DLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~-------d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
|.|||+.-..++.....-..+.+..|..+.. .+.....+=..++..+..++.|+.+-..|++-- .-|..-+.
T Consensus 354 lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~-~aIKDAVk 432 (602)
T 1cii_A 354 LRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDEL-KATKDAIN 432 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHH-HHHHHHHH
Confidence 4466555444444443333333334433332 333333333445666677777877777777743 34777777
Q ss_pred HhhcccCCChHH
Q 025130 222 FVDGKKGRTTES 233 (257)
Q Consensus 222 f~~~~~~~~~~~ 233 (257)
|+.+...++.+.
T Consensus 433 fTAdFykkIsEk 444 (602)
T 1cii_A 433 FTTEFLKSVSEK 444 (602)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666555554
No 208
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=31.74 E-value=1.1e+02 Score=27.98 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=29.6
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 025130 181 LFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
+.....|++.+...|.+|+..|.++..=.---.+|+.+|
T Consensus 381 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T 2xz3_A 381 IHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWL 419 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Confidence 456778889999999999999999876544445666655
No 209
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=31.58 E-value=2.2e+02 Score=23.47 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=49.4
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH-----HHH------HH------HHHhhhhHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISK-----DIR------KN------VEEACDDLF 182 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~-----~i~------~e------V~~v~~d~~ 182 (257)
.++.+..-+..+.++|+...+++..--..+.++|...|+.+|....-.. .+. .+ +..+-.|++
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlE 91 (235)
T 1sum_B 12 FKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIE 91 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 3555666666666777777777766555666777777776665533221 110 11 234457888
Q ss_pred HhhhhHHHHHHHHHhhhh
Q 025130 183 KVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~ 200 (257)
+||+-..+|-..+..+..
T Consensus 92 RIgD~a~~Ia~~~~~~~~ 109 (235)
T 1sum_B 92 NIADKCHDIAKNVLELME 109 (235)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 888888877776666554
No 210
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=31.34 E-value=3.2e+02 Score=25.35 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=29.3
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV 160 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kl 160 (257)
+.|..+-..-..++.++.++++.|...+..+..+|+.--+++
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~i 105 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQI 105 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777888888888888777777776665543333
No 211
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.30 E-value=1.3e+02 Score=22.10 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
..--.+|.-||...++.+|+.+++.-.=+.++..++..+..+..-+.++
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334566677777777777777777777777766665555555444444
No 212
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=31.11 E-value=2.3e+02 Score=23.65 Aligned_cols=24 Identities=13% Similarity=0.387 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhH
Q 025130 165 EISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 165 eis~~i~~eV~~v~~d~~~i~~dv 188 (257)
++...++.++.+++..++-+..++
T Consensus 99 ~lr~~l~kdlEelr~kL~P~~eEL 122 (191)
T 1nfn_A 99 AAQARLGADMEDVCGRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344455556666666555544443
No 213
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.02 E-value=41 Score=26.35 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=35.2
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHH
Q 025130 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
+.++++.++..++....+-+.+++-+..||.+|.+..-..||
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~ 51 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDY 51 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 567899999999999999999999999999999874433443
No 214
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.95 E-value=91 Score=23.13 Aligned_cols=42 Identities=7% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
=++.-+..|.+..++++....++.+-...+.++.+.++.++.
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334445555555555566665555555566666655544
No 215
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A* 2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A* 3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Probab=30.43 E-value=49 Score=32.61 Aligned_cols=78 Identities=22% Similarity=0.229 Sum_probs=51.2
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH---HHhhhhHHHhhhhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV---EEACDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL-------~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV---~~v~~d~~~i~~dv 188 (257)
|-++|=+.|...++..|..+-|.. ...=.+|.+||++|.+++|+...=.=.-..|+ -|=+..+.--..+|
T Consensus 376 AD~kSTQ~AId~It~K~N~iiek~n~qf~~i~~ef~~~e~ri~~l~~~v~D~~~dvwsynaeLLV~leN~~Tld~~Dsnv 455 (509)
T 2wr1_A 376 ADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNV 455 (509)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhccHHHHhhhccchhhhhhhhHH
Confidence 457899999999999888886532 22235788999999999998742222222232 22234455556777
Q ss_pred HHHHHHHH
Q 025130 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
+++++.|+
T Consensus 456 ~~l~ekvr 463 (509)
T 2wr1_A 456 KNLYDKVR 463 (509)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776664
No 216
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=30.43 E-value=1e+02 Score=25.92 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 132 ~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
-.=|+.+.+.....-+++..+|+.+++++-+.. ......++..++.++-.++.=+...+.++..|.
T Consensus 174 ~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~--~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 239 (269)
T 2bbh_A 174 YSLIDALVDDYFVLLEKIDDEIDVLEEEVLERP--EKETVQRTHQLKRNLVELRKTIWPLREVLSSLY 239 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888888888877754321 123344566666666666666666666665554
No 217
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=30.34 E-value=1.5e+02 Score=21.13 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=32.6
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh----HHHhHHHHHHHHHhh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ----DITNIGMYLLCNFVD 224 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ----d~tn~GV~~Lc~f~~ 224 (257)
+++..+..++..++.=+..+..+|..=+.-|++||.|- +.+..|...|-.+..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666666766677778877764 445556666655543
No 218
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.21 E-value=1.7e+02 Score=21.74 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025130 168 KDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 168 ~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
..++.++.+++..+..+...+..+..-+..|+.
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443344444444333333333333
No 219
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=30.10 E-value=15 Score=26.12 Aligned_cols=21 Identities=14% Similarity=0.483 Sum_probs=18.4
Q ss_pred eeeeeccCcchhHHHhHhhHH
Q 025130 105 YMWWKGLSFADLMYVTRKSMA 125 (257)
Q Consensus 105 YmwWKGws~sDlMfVTkr~ms 125 (257)
++.|||++-+|--|-...||.
T Consensus 19 lVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 19 LVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEecCCCcCCcEeEHHHCC
Confidence 489999999998888888984
No 220
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=30.00 E-value=26 Score=26.92 Aligned_cols=20 Identities=45% Similarity=0.777 Sum_probs=18.2
Q ss_pred CCcchHHHHHHHHHHHHhhc
Q 025130 29 GKLPELLRELQSLVERLSKS 48 (257)
Q Consensus 29 GkLsd~~g~lq~~lk~~~k~ 48 (257)
|||.|++.+||+++|.+-|.
T Consensus 3 gklndlledlqevlknlhkn 22 (102)
T 1p68_A 3 GKLNDLLEDLQEVLKNLHKN 22 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999764
No 221
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.91 E-value=5.2e+02 Score=27.28 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
.+.+-|+.+-+.++.+-.. ..-++.+..++..++.++++..+-.+...+|..++++...+
T Consensus 957 ~~~~e~~~L~~~l~~le~~-~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665543 33333445556666665555555444444444444443333
No 222
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=29.81 E-value=92 Score=28.32 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=10.9
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025130 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
+.++..++..+..++.+|.+-|+.+-.||.
T Consensus 218 ~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~ 247 (268)
T 2yo3_A 218 MGEMNSKIKGVENKMKQIEDKIEEILSKIY 247 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 223
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=29.68 E-value=7.8 Score=33.03 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.4
Q ss_pred hheecccccceee
Q 025130 13 LMLAGLGYTGTIL 25 (257)
Q Consensus 13 ~iLvGAG~~GSvl 25 (257)
+++||||++|+.+
T Consensus 7 ViIVGaGpaGl~~ 19 (397)
T 3oz2_A 7 VLVVGGGPGGSTA 19 (397)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 5789999998744
No 224
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=29.51 E-value=1.9e+02 Score=22.09 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=21.0
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHh-------hhhhhhhhhhhhHHHh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYC-------LDGKIDSLADKQDITN 213 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~-------Le~Ki~~ie~kQd~tn 213 (257)
+++.+=+.++.+|..++..+++++.. =+.-|++||.|-+.|.
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~ 62 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444444444444444 4556677776654443
No 225
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A {Nitrosomonas europaea} SCOP: a.138.1.3
Probab=28.90 E-value=24 Score=34.48 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=8.0
Q ss_pred heeeeeeecc
Q 025130 102 GYGYMWWKGL 111 (257)
Q Consensus 102 GYgYmwWKGw 111 (257)
...|.||.||
T Consensus 462 ~~~~~~~~G~ 471 (546)
T 1fgj_A 462 PGGWTYTEGW 471 (546)
T ss_dssp GGGTSSSSTH
T ss_pred CCccceecch
Confidence 3459999999
No 226
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=28.79 E-value=3.2e+02 Score=26.57 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=10.5
Q ss_pred hhhhhhhhhhhhhHHHhHHHHHH
Q 025130 197 CLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 197 ~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
..+..|..+..--+.-+..|-.|
T Consensus 160 ~~~~~i~~l~~~~~~~~~~i~~l 182 (461)
T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKL 182 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 227
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.78 E-value=2.6e+02 Score=27.11 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=7.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhH
Q 025130 190 DLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~kQd 210 (257)
.+..-+..|..+|..+|....
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~ 95 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEA 95 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 228
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=28.76 E-value=44 Score=28.21 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=42.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 129 ~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
.-+-.=|+.+.+.....-+++..+|+.+++++-+. ......++..+|.++-.++.=+...+.++..|.
T Consensus 147 ~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~---~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 214 (264)
T 3nvo_A 147 GWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ---QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLA 214 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33445567777777777777888888877776432 233445566677666666666666666666664
No 229
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.40 E-value=2.1e+02 Score=22.25 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025130 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
.+...-++|..+...++.++....+--..-+..=..+....++|..+++.+-
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555556666555544333333334444444455555555553
No 230
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.32 E-value=3.2e+02 Score=24.43 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=53.6
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHH
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMI 195 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V 195 (257)
...|.+-.++|...|+- |.--|.-...-|..+|.|+++...+.+.+-+.+..+..|=.....|+..|...+
T Consensus 151 l~~Lkk~~~~i~~~Lel----L~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Ri 221 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEF----LNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRL 221 (242)
T ss_dssp SHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45567777777777764 344555667789999999999999999999999888887777777777774333
No 231
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=27.64 E-value=1.4e+02 Score=20.12 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhhhHH
Q 025130 166 ISKDIRKNVEEACDDLF 182 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~ 182 (257)
++.+++.-++.+..-++
T Consensus 67 ~shel~~~l~~i~~~~~ 83 (115)
T 3zrx_A 67 VSHDLRTPLTRIRLATE 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 33333333333333333
No 232
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.61 E-value=1e+02 Score=21.12 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=22.1
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 025130 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (257)
..|...||+|.++|...++--+.|.+++.-
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457777888888888887777777766643
No 233
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=27.23 E-value=13 Score=34.10 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 164 NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.+++..++++| .++..+++.++..+..||.|+.+..
T Consensus 33 ~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~ 68 (385)
T 3p8q_A 33 GQVSKQLQSDL-------MKVQEELTKSGTRLFDLEQKLASGA 68 (385)
T ss_dssp -------------------------------------------
T ss_pred CCccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34445555555 4445555566666666677776553
No 234
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.11 E-value=1.2e+02 Score=24.70 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
+.+-|++|.++||.+.- +..-...++|.+- +..+..-+..|+.+|.++.++|.+.
T Consensus 8 ~K~Eiq~L~drLD~~~r-----Klaaa~~rgd~~~----i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRH-----QQADLSLVEAADK----YAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHSCTTTCTTH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHhCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776621 1112222333332 3344555566788888888887753
No 235
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.04 E-value=1.8e+02 Score=27.59 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025130 139 TEALTVAKKHLTQRIQN 155 (257)
Q Consensus 139 s~sL~~tKkhLsqRI~~ 155 (257)
.+.|++-+..++..|..
T Consensus 47 ~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 47 INRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 236
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=26.80 E-value=1.8e+02 Score=24.77 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhh--HHHHHHHHHhhhhhhhhhhh
Q 025130 162 KQNEISKDIRKNVEEACDDLFKVEHN--LKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~~i~~d--v~~v~~~V~~Le~Ki~~ie~ 207 (257)
+..+.-..||+++..+..++..=..+ ..--...|..||..|+++..
T Consensus 55 ~~~~~L~~IQ~~Lf~lga~la~p~~~~~~~i~~~~v~~LE~~Id~~~~ 102 (193)
T 1rty_A 55 DLTAELLTIQHELFDCGGDLAIVTERKDYKLTEESVSFLETRIDAYTA 102 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHHHh
Confidence 44555666666666666666542110 00012455556666665554
No 237
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=26.73 E-value=29 Score=28.29 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHhhcCCCC------cchHHHHHHHHHHH
Q 025130 31 LPELLRELQSLVERLSKSGEQD------NFTDAIKDQLNRLK 66 (257)
Q Consensus 31 Lsd~~g~lq~~lk~~~k~gd~~------~~~d~L~aQV~~L~ 66 (257)
|+|-++.++.=+......||.. ...+.|.++|.+|+
T Consensus 15 L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 15 LSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555665655555555566665 45677777777775
No 238
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.45 E-value=2.1e+02 Score=21.66 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=15.6
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKK 147 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKk 147 (257)
++++|..|..+==+-=+.+++.|..+|.
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~ 38 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRT 38 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778877776544433444555544443
No 239
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=26.41 E-value=1.1e+02 Score=26.37 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 134 qLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
=|+.+.+.....-+++..+|+.+++++-+. .....-.++..++.++-.++.=+...+.++..|.
T Consensus 161 lld~ivd~y~~~l~~i~~~id~lE~~l~~~--~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~ 224 (280)
T 4egw_A 161 ILNEITRSYSRILMNLEDELEELEDKLLAG--YDREVMEKILGLRKTLVYFHKSLIANRDVLVLLK 224 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356666666666677777777776665321 1233344566666666666666666666666553
No 240
>4i78_C Hemagglutinin HA2; influenza VRUS, hemagglutinin homologue, viral protein, ectodomain; HET: NAG FUC; 3.18A {Influenza a virus}
Probab=26.35 E-value=31 Score=29.65 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=48.8
Q ss_pred HhHhhHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTEALT-------VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~sL~-------~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (257)
+.++|-..|...++..|..|.+... ..=.++.+||.+|++++|+...-.=.-..|+-.+ +..+.--...|
T Consensus 36 AD~kSTQ~AId~It~KvN~iiekmn~qfe~v~~Ef~~~e~ri~~l~~~vdD~~~dvwsynaELLVlleNe~tld~hDsnv 115 (181)
T 4i78_C 36 ADKEATQKAVDGITNKVNSIIDKMNSQFESNIKEFNRLELRIQHLSDRVDDALLDIWSYNTELLVLLENERTLDFHDANV 115 (181)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTCCCCEEECBCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHccccccchhhHHH
Confidence 5789999999999999888876432 2234577899999999998754333333333222 23333344555
Q ss_pred HHHHHHH
Q 025130 189 KDLQSMI 195 (257)
Q Consensus 189 ~~v~~~V 195 (257)
.++.+.|
T Consensus 116 ~nL~ekv 122 (181)
T 4i78_C 116 KNLFEKV 122 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 241
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.12 E-value=1.3e+02 Score=22.69 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=5.8
Q ss_pred HHHHHHhhHHHHHHH
Q 025130 128 VSNLNKHLESVTEAL 142 (257)
Q Consensus 128 v~sv~kqLeqVs~sL 142 (257)
|..+-..|+.+...+
T Consensus 14 v~~I~~~i~~i~~~v 28 (127)
T 1ez3_A 14 VEEIRGFIDKIAENV 28 (127)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444433333
No 242
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=25.85 E-value=62 Score=20.56 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=17.3
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHH
Q 025130 169 DIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
.|+.|+..++..+..|.+++..++
T Consensus 6 aikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777778777764
No 243
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=25.84 E-value=1.2e+02 Score=29.92 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 025130 130 NLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 130 sv~kqLeqVs~sL~~tKkhLsq 151 (257)
+++.+|.+|..+|+.++.||.+
T Consensus 427 DISseL~~vn~sl~~a~~~I~~ 448 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQ 448 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999888644
No 244
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=25.44 E-value=1.3e+02 Score=25.38 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 162 KQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+..+.-..||+++..+..++..=..+..--...|..||..|+++..
T Consensus 50 ~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~ 95 (177)
T 1nog_A 50 DIRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKA 95 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHh
Confidence 4555566666666666666664211000012445555666665544
No 245
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.42 E-value=2e+02 Score=20.91 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025130 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 140 ~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
.+=.+-+..=.++|..|..++++.......+..|...++..+..+..++.
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556777888888877777777666666666666655555443
No 246
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=25.12 E-value=11 Score=32.57 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.7
Q ss_pred hheeccccccee
Q 025130 13 LMLAGLGYTGTI 24 (257)
Q Consensus 13 ~iLvGAG~~GSv 24 (257)
+++||||++|..
T Consensus 4 V~IVGaGpaGl~ 15 (412)
T 4hb9_A 4 VGIIGAGIGGTC 15 (412)
T ss_dssp EEEECCSHHHHH
T ss_pred EEEECcCHHHHH
Confidence 468899999864
No 247
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.10 E-value=2e+02 Score=20.98 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025130 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
......++..++.|+.+.-.|-+.+-.+=..||-.|
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333455566666666666666665555545555444
No 248
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=25.09 E-value=3.1e+02 Score=23.19 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHh-hhhc
Q 025130 55 TDAIKDQLNRLKFEC-QRAS 73 (257)
Q Consensus 55 ~d~L~aQV~~L~~El-~Las 73 (257)
+..+..-|+..+.+- .||-
T Consensus 68 I~~i~~~I~~IA~QTNLLAL 87 (227)
T 1qu7_A 68 IADIISVIDGIAFQTNILAL 87 (227)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 4443
No 249
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.97 E-value=2e+02 Score=20.99 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=11.0
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHH
Q 025130 152 RIQNLNDKVEKQNEISKDIRKNVE 175 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~ 175 (257)
.++.+..++++..+-...+..++.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 250
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=24.85 E-value=2e+02 Score=24.43 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHH
Q 025130 162 KQNEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~ 182 (257)
+..+.-..||+++..+..++.
T Consensus 58 ~~~~~L~~IQ~~Lf~lga~la 78 (193)
T 2g2d_A 58 QITDVLRQIQNDLFDAGADLS 78 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 445555666666666666665
No 251
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.80 E-value=2.1e+02 Score=21.06 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=26.2
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+++|++.+..+=.+..+-....++++.+-+..-++...+++ ...+.|++||..+.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk---~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK---TLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHH
Confidence 44555555444444444444444444444444444443333 334556666665544
No 252
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.67 E-value=85 Score=20.31 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=9.4
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHH
Q 025130 152 RIQNLNDKVEKQNEISKDIRKNVE 175 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~ 175 (257)
|...|.+|+++...=-....+||.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~ 25 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHH
Confidence 334444444444333333333443
No 253
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=24.62 E-value=2.2e+02 Score=27.80 Aligned_cols=31 Identities=3% Similarity=0.161 Sum_probs=25.1
Q ss_pred cchhHHHhHh--hHHHHHHHHHHhhHHHHHHHH
Q 025130 113 FADLMYVTRK--SMATAVSNLNKHLESVTEALT 143 (257)
Q Consensus 113 ~sDlMfVTkr--~ms~Av~sv~kqLeqVs~sL~ 143 (257)
-.|-+|+.-| ++.++...+.+.+++..+.-.
T Consensus 277 ~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~ 309 (650)
T 2xhe_A 277 EDDDIWLQMRHLHISEVFRKVKSSFDEFCVSAR 309 (650)
T ss_dssp TTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Confidence 4799999887 688999999888888876554
No 254
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=24.51 E-value=1.2e+02 Score=27.35 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=14.7
Q ss_pred cccccchhhhheeccc----ccceeeccCCCc
Q 025130 4 QAGMSFQKILMLAGLG----YTGTILVKDGKL 31 (257)
Q Consensus 4 q~g~~l~kv~iLvGAG----~~GSvl~k~GkL 31 (257)
..|.+.|.++. +|-. ..-.+.+.+|+.
T Consensus 21 ~~g~~pg~~~~-~~~~~~~~~i~~~~y~~~~~ 51 (363)
T 2iub_A 21 KKGLPPGTLVY-TGKYREDFEIEVMNYSIEEF 51 (363)
T ss_dssp CCSCCTTCCCC-CSSCCSCCEEEEEEECSSCE
T ss_pred CCCCCCcceec-cCCCCCCeEEEEEEEcCCce
Confidence 56888886643 3532 123345566664
No 255
>4gip_D Fusion glycoprotein F1; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=24.48 E-value=53 Score=31.46 Aligned_cols=53 Identities=19% Similarity=0.464 Sum_probs=18.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 130 sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
+++..|..|..+|..|+++| |+.+.+-+.+++++.++-.++-+|..++..++.
T Consensus 346 DIsteL~~vn~~L~~A~~~l-----------~~Sn~iL~svn~Ki~~~~~~~~~~~~~~~~~~~ 398 (409)
T 4gip_D 346 DISQNLAAVNKSLSDALQHL-----------AQSDTYLSAIEDKIEEILSKIYHIENEIARIKK 398 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTC-----------------------
T ss_pred chhhhHHHHHHHHHHHHHHH-----------HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777776654 334444445555555555555555555555543
No 256
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=24.42 E-value=2.2e+02 Score=21.14 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=9.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 025130 129 SNLNKHLESVTEALTVAKKHLT 150 (257)
Q Consensus 129 ~sv~kqLeqVs~sL~~tKkhLs 150 (257)
+.+-.++++|...+...=..+-
T Consensus 8 ~~vq~ev~evk~iM~~NI~kvL 29 (91)
T 3hd7_A 8 QQTQAQVDEVVDIMRVNVDKVL 29 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 257
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.41 E-value=80 Score=20.44 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=13.6
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 152 RIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
|...+.+|+++...--..+.+||.-++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 444555555555544455555554444
No 258
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=24.36 E-value=1.1e+02 Score=27.16 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025130 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 135 LeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
|+.+.+.....-+++..+|+.+++++-+.. .....+++..++.++..++.-+...+.++..|...
T Consensus 162 ld~ivd~~~~~l~~l~~~i~~lE~~l~~~~--~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~ 226 (339)
T 4ev6_A 162 LNEITRSYSRILMNLEDELEELEDKLLAGY--DREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRK 226 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhc
No 259
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=24.30 E-value=3.1e+02 Score=22.76 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 123 SMATAVSNLNKHLESVTEALTVAKK---HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVs~sL~~tKk---hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
...+-+..++.+|...-..-..|-| .|..-||++.++|+..++--+.|++++...-.++..+..++..+..-|..|
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
No 260
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.09 E-value=2.9e+02 Score=22.38 Aligned_cols=72 Identities=11% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHH----hhHHHHHHHHHHH---HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025130 127 AVSNLNK----HLESVTEALTVAK---KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 127 Av~sv~k----qLeqVs~sL~~tK---khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
-|-+++. ||.+-++.|..+. ---.+=+..|-+.|++-+.-. ++.| ..+.++|..+++.+...+
T Consensus 22 ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~v-------qeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 22 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKV-------EELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4555554 4455666666665 233444555555555432221 3334 444566666777777777
Q ss_pred hhhhhhhhh
Q 025130 200 GKIDSLADK 208 (257)
Q Consensus 200 ~Ki~~ie~k 208 (257)
.+++++...
T Consensus 92 ae~erlr~~ 100 (121)
T 3mq7_A 92 AEVERLRRE 100 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777766543
No 261
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.07 E-value=1e+02 Score=27.75 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=17.1
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025130 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
.|..+++.+..+.+.+.+..+..++|+..+++.+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444455554444333
No 262
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=24.05 E-value=1.9e+02 Score=20.23 Aligned_cols=42 Identities=5% Similarity=0.192 Sum_probs=25.7
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
+++..+..++..+..=+..+..+|..=+.-|++||.|-+.|.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 51 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQ 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555555555666666666666777777777654443
No 263
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.03 E-value=2e+02 Score=22.07 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=21.0
Q ss_pred hhhheeeeeeeccCcchhHHHhHhhHHHHHHHHHHhhHHHHHHHHH
Q 025130 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTV 144 (257)
Q Consensus 99 GavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVs~sL~~ 144 (257)
.-+|.||+-.+ +..+|..-+.+.++.+...+..
T Consensus 74 v~lG~g~~vE~-------------~~~eA~~~l~~r~~~l~~~~~~ 106 (133)
T 1fxk_C 74 MSVGAGVAIKK-------------NFEDAMESIKSQKNELESTLQK 106 (133)
T ss_dssp EEEETTEEEEE-------------EHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCEEEEe-------------eHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888776 4566766666666555544443
No 264
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=23.71 E-value=76 Score=21.86 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 025130 131 LNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 131 v~kqLeqVs~sL~~tKkhLsq 151 (257)
++.+|.++..+|++++.||.+
T Consensus 12 ISseL~~iNnsL~~A~~~I~e 32 (48)
T 2fyz_B 12 ISTELSKVNASLQNTVKYIKE 32 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888887654
No 265
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.64 E-value=2.6e+02 Score=21.79 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=4.1
Q ss_pred HHHHHHHHHhh
Q 025130 146 KKHLTQRIQNL 156 (257)
Q Consensus 146 KkhLsqRI~~v 156 (257)
|+.|..+...+
T Consensus 36 r~ele~~~~~l 46 (129)
T 2fxo_A 36 RKELEEKMVSL 46 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 266
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=23.53 E-value=1.9e+02 Score=20.10 Aligned_cols=42 Identities=7% Similarity=0.122 Sum_probs=26.8
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
+++..+..++..+..=+..+..+|..=+.-|++||++-+.|.
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 53 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 53 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445555555555666666666677777777788887655444
No 267
>2yp5_A Hemagglutinin, haemagglutinin; viral protein, receptor binding, membrane fusion, influenza evolution, glycoprotein; HET: NAG MAN EPE TAM SIA; 1.79A {Influenza a virus} PDB: 2yp2_A* 2yp3_A* 2yp4_A* 2yp9_A* 2yp7_A* 2yp8_A* 1ha0_A* 3vun_A* 1mqm_A* 1mql_A* 1mqn_A* 3ztj_A* 1hge_A* 1hgd_A* 2hmg_A* 1hgh_A* 1hgf_A* 1hgg_A* 1eo8_A* 1hgi_A* ...
Probab=23.42 E-value=31 Score=34.02 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=50.0
Q ss_pred HhHhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 025130 119 VTRKSMATAVSNLNKHLESVTE-------ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVs~-------sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (257)
|-++|=.+|...++..|-.+.| ++...=.+|..||++|++|+|+...=.=.-..|+-.+ +..+..-..+|
T Consensus 365 AD~kSTQ~AId~It~KvN~iiek~n~qf~~i~~Ef~~le~ri~~l~~~vdD~~~diwsynaELlVlleNe~tld~~Dsnv 444 (503)
T 2yp5_A 365 ADLKSTQAAINQINGKLNRLIGKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEM 444 (503)
T ss_dssp ECHHHHHHHHHHHHHHHHHHSSCCEEECSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhcccccchhhHHH
Confidence 4689999999999999888765 3344445678899999999998743322223332222 23344444566
Q ss_pred HHHHHHHH
Q 025130 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
.++.+.|+
T Consensus 445 ~nL~ekvr 452 (503)
T 2yp5_A 445 NKLFERTK 452 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 268
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.36 E-value=94 Score=20.10 Aligned_cols=27 Identities=11% Similarity=0.136 Sum_probs=12.1
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 152 RIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
|...+.+|+++...--...++||.-++
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344445555544444444444444333
No 269
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=23.34 E-value=2.2e+02 Score=20.76 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 025130 124 MATAVSNLN 132 (257)
Q Consensus 124 ms~Av~sv~ 132 (257)
|.++...+.
T Consensus 16 l~~~a~~~~ 24 (103)
T 4i0x_B 16 IEQVTSRAR 24 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 270
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=23.26 E-value=2e+02 Score=26.27 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVA 145 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~t 145 (257)
+.+..+++.++++++...+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~ 266 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKA 266 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 271
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.25 E-value=2e+02 Score=20.29 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=21.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025130 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 128 v~sv~kqLeqVs~sL~~tKkhLsqRI~~vd 157 (257)
.+.+-.|++.|...+......+..|-++|+
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~ 35 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLS 35 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888777777765544
No 272
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=23.17 E-value=3.7e+02 Score=26.58 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH---HHHHHhhhhhhhhhhhhhHHHhHHHHHHH
Q 025130 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL---QSMIYCLDGKIDSLADKQDITNIGMYLLC 220 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v---~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 220 (257)
..|-+|..+|.+...+=|. ..+.+..+..+.++..+++.+...-..+ ...-.|||--..++.+--.+.-.-.+.|-
T Consensus 500 ~~k~~l~~~l~~~y~~~d~-~~l~~l~~~~~~~l~~~~~~l~~~~~~~Wl~~~kp~Gle~~~~R~~g~~~R~~~~~~r~~ 578 (627)
T 2epl_X 500 ALKISITSGIQKAYRNGDK-EHLSALAEKDFPQLYQMVEDFSDQFSRQWQQENKIFGLDTIDIRFGGLLKRIKRAQERLE 578 (627)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHBCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777666544221 2233333444555555555555443332 11112333333333333333333445677
Q ss_pred HHhhcccCCChHHHHHHhhh
Q 025130 221 NFVDGKKGRTTESMQEQLKL 240 (257)
Q Consensus 221 ~f~~~~~~~~~~~~q~~~k~ 240 (257)
+|+.|...+++|.-++.+..
T Consensus 579 ~~~~g~~~~~~el~~~~l~~ 598 (627)
T 2epl_X 579 QFISGQIDCVEELEQEILPF 598 (627)
T ss_dssp HHHHTSSSCCGGGGSCCCCS
T ss_pred HHHcCCcCChhhcCCCcCCC
Confidence 89999999999885544433
No 273
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=23.10 E-value=3e+02 Score=22.20 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=46.6
Q ss_pred hHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH-----HHHHH------H------HHHHhhhhHH
Q 025130 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEI-----SKDIR------K------NVEEACDDLF 182 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~ei-----s~~i~------~------eV~~v~~d~~ 182 (257)
.++.+..-...+.+.|+...+++..--..+..+|...|+++|+...- .+.+. . .+..+-.+++
T Consensus 16 ~~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lE 95 (227)
T 1t72_A 16 TKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLE 95 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666554455666777777766654321 11111 1 1233557888
Q ss_pred HhhhhHHHHHHHHHhhhh
Q 025130 183 KVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~ 200 (257)
+||+-..+|-..+..+..
T Consensus 96 RIgD~a~nIa~~~~~~~~ 113 (227)
T 1t72_A 96 RMGDEAENIAERAILLAE 113 (227)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 888888777766665543
No 274
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=22.83 E-value=3.4e+02 Score=24.21 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhhcccCCC-hH
Q 025130 190 DLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRT-TE 232 (257)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~-~~ 232 (257)
.+..-+..-+.++..++.-...+..-...+|.|.+....+. |+
T Consensus 249 ~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~~~~~ 292 (340)
T 1v9d_A 249 KMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVE 292 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 44555666677777777666666666778888887554444 44
No 275
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=22.78 E-value=2e+02 Score=20.19 Aligned_cols=11 Identities=9% Similarity=0.428 Sum_probs=4.7
Q ss_pred HhhHHHHHHHH
Q 025130 133 KHLESVTEALT 143 (257)
Q Consensus 133 kqLeqVs~sL~ 143 (257)
..|++++..+.
T Consensus 10 ~nLd~l~~~~~ 20 (64)
T 3b5n_D 10 RNLDQIQQVSN 20 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 34444444443
No 276
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=22.77 E-value=54 Score=28.94 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=25.0
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
..|..+.-|+++.+.||-..-..+..||.|+..+|.
T Consensus 4 ~~v~~~st~v~NlkssVS~~~l~ls~L~~Rv~~le~ 39 (211)
T 2vrs_A 4 TTVDGNSTAISNLKSDISSNGLAITDLQDRVKSLES 39 (211)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ehhhhchhhhhhhhhhhhhhhhhhhhHHHHHHHHhc
Confidence 345666677777777777777778888888877773
No 277
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.73 E-value=2.2e+02 Score=27.58 Aligned_cols=12 Identities=0% Similarity=-0.119 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 025130 142 LTVAKKHLTQRI 153 (257)
Q Consensus 142 L~~tKkhLsqRI 153 (257)
|++-+..++..|
T Consensus 56 l~~~rN~~sk~i 67 (484)
T 3lss_A 56 SKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 278
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=22.68 E-value=1.5e+02 Score=18.49 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHH
Q 025130 139 TEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 139 s~sL~~tKkhLsqRI~~vd~kld~ 162 (257)
|++|..--..|.++++.+..||+.
T Consensus 3 wealekkcaalesklqalekklea 26 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677778888877764
No 279
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=22.67 E-value=2.2e+02 Score=20.57 Aligned_cols=52 Identities=8% Similarity=0.071 Sum_probs=32.8
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhH----HHhHHHHHHHHHh
Q 025130 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD----ITNIGMYLLCNFV 223 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd----~tn~GV~~Lc~f~ 223 (257)
+++..+..++..++.=+..+..+|..=+.-|++||.|-+ .+..|...|..+.
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666677777778888887654 4455566665544
No 280
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=22.50 E-value=1.1e+02 Score=21.25 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025130 124 MATAVSNLNKHLESVTEALTVAKKHLTQRI 153 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI 153 (257)
=..||.+++..+.++-.++.+.++++..-|
T Consensus 16 TNeAV~~L~~g~~~la~Av~~iQ~~IN~~i 45 (51)
T 3kpe_A 16 TNKAVVSLSNGVSVLTSKVLDLKNYIDKQL 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888888888888776544
No 281
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=22.22 E-value=2.1e+02 Score=23.95 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025130 162 KQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+..+.-..||+++..+..++..=..+..--...|..||..|+++..
T Consensus 49 ~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~ 94 (177)
T 1woz_A 49 DMKKDLERVQVELFEIGEDLSTQSSKKKIDEKYVKWLEERTVEYRK 94 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCHHHHHHHHHHHHHHHh
Confidence 4555566667777666666665211000012445555555554444
No 282
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=22.18 E-value=12 Score=34.28 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=13.2
Q ss_pred hheecccccceeecc
Q 025130 13 LMLAGLGYTGTILVK 27 (257)
Q Consensus 13 ~iLvGAG~~GSvl~k 27 (257)
+|+||+|.+|++++.
T Consensus 20 ~IIVGsG~aG~v~A~ 34 (526)
T 3t37_A 20 IVIVGGGSAGSLLAA 34 (526)
T ss_dssp EEEECCSHHHHHHHH
T ss_pred EEEECccHHHHHHHH
Confidence 599999999999874
No 283
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.18 E-value=78 Score=21.83 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=11.2
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025130 181 LFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
|.++..|++.+..-...|..++.+++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455544443
No 284
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.46 E-value=1.5e+02 Score=23.52 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHhhhhhhhhh-------hh-------h--hHHHhHHHHHHHHHhhcccCCChHHHH
Q 025130 185 EHNLKDLQSMIYCLDGKIDSL-------AD-------K--QDITNIGMYLLCNFVDGKKGRTTESMQ 235 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~i-------e~-------k--Qd~tn~GV~~Lc~f~~~~~~~~~~~~q 235 (257)
+.|.+.++.++..|-.+ +.+ +. . .-.+..=+..++..++|+.+.-|.+-|
T Consensus 81 ~~d~~~lr~~~~~l~~~-~~vv~l~~~~~~~~~v~~~~~~~~~a~~lvk~~~~~~gGkGGGkp~~AQ 146 (171)
T 2zvf_A 81 DADMQALQKLAERLAEK-GAVGCLMAKGEGKVFVVTFSGQKYDARELLREIGRVAKGSGGGRKDVAQ 146 (171)
T ss_dssp SCCHHHHHHHHHHHHHT-TEEEEEEEECSSSEEEEEEESSSSCHHHHHHHHHHHHTEECCBCSSEEE
T ss_pred CCCHHHHHHHHHHHhcC-CCEEEEEEcCCCeEEEEEECCCCCCHHHHHHHHHHHcCCCCCCcHHHcc
Confidence 67888999998887554 211 00 0 112334467788888887777676543
No 285
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.30 E-value=1.7e+02 Score=20.87 Aligned_cols=36 Identities=11% Similarity=0.416 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025130 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
...+..|.++++.++.++++..++.+.+..-+....
T Consensus 38 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 38 QESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666665555554443
No 286
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=21.27 E-value=68 Score=27.16 Aligned_cols=64 Identities=13% Similarity=0.233 Sum_probs=32.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025130 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 132 ~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
-.=|+.+.+.....-+++..+|+.+++++-+... ....++..++.++-.++.=+...+.++..|
T Consensus 175 ~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~---~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L 238 (266)
T 2hn1_A 175 YTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS---TLIGKIHSLKREILAFRNAVWPLRDVLSFF 238 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---CCCCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666777777776666532211 122334444444444444444444444444
No 287
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.05 E-value=2.6e+02 Score=22.06 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (257)
+..|.++++.++.++++..+..+.+.+.+
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 288
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.01 E-value=80 Score=29.82 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025130 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
|.+..++|+.+..++.+..+-.+.++.+-.++...+..+.++++.
T Consensus 20 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~ 64 (405)
T 4b4t_J 20 KPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRL 64 (405)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666655555544444444444444444444444443
No 289
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.96 E-value=78 Score=28.50 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=30.0
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025130 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
.|+..+..++++..+--+.++++..+++..+.+...+++.+++
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3677777777666666666677777777777777777777654
No 290
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=20.95 E-value=2.3e+02 Score=22.69 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHhhHHhHHHHHHH
Q 025130 122 KSMATAVSNLNKHLESVTEALTVAKK------HLTQRIQNLNDKVEKQNEI 166 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs~sL~~tKk------hLsqRI~~vd~kld~~~ei 166 (257)
+.+..+|.+++++|+++...|....+ +...-+-.||.++--..|.
T Consensus 14 ~~veksv~~~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~ 64 (114)
T 1hx1_B 14 KHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQ 64 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHH
Confidence 45667888889999999888877543 3333444555554444333
No 291
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=20.90 E-value=2e+02 Score=21.84 Aligned_cols=21 Identities=10% Similarity=0.406 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhh
Q 025130 188 LKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~k 208 (257)
+++|+++....|.=|++....
T Consensus 61 ~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 61 ADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655443
No 292
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=20.75 E-value=1.3e+02 Score=22.35 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=12.0
Q ss_pred HHhHhhHHHHHHHHHHhhHHHHHHHHHHH
Q 025130 118 YVTRKSMATAVSNLNKHLESVTEALTVAK 146 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVs~sL~~tK 146 (257)
+-|+--|.++.+.++|+++++++-|+.+-
T Consensus 14 ~~s~eel~~~L~~~~k~~~Hl~~LL~EsE 42 (71)
T 3bbp_D 14 EFTKEELVQKLSSTTKSADHLNGLLRETE 42 (71)
T ss_dssp ---------------CTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45888999999999999999999988763
No 293
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.64 E-value=2.7e+02 Score=26.12 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=26.9
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh
Q 025130 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD 180 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d 180 (257)
|..|++.+..+-++.+++-..+...+. .++.+..+|-+....-+..-+++.++++.
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~----~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAA----ELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555555555555544444444333 33333344444444445555666666544
No 294
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.59 E-value=4.6e+02 Score=23.40 Aligned_cols=19 Identities=5% Similarity=0.293 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 025130 124 MATAVSNLNKHLESVTEAL 142 (257)
Q Consensus 124 ms~Av~sv~kqLeqVs~sL 142 (257)
..+.+..+...+|.+.+.+
T Consensus 193 y~~~l~~l~~~id~lE~~v 211 (363)
T 2iub_A 193 YFVLLEKIDDEIDVLEEEV 211 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 295
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=20.58 E-value=4.3e+02 Score=23.06 Aligned_cols=46 Identities=30% Similarity=0.260 Sum_probs=22.0
Q ss_pred cCCCeEEEeCCCCCcceeehhhhhHhhhhheeeeeeeccC-cchhHHHhHhhH
Q 025130 73 SSGQIFVRNENSGGNATSLMIPAATLGALGYGYMWWKGLS-FADLMYVTRKSM 124 (257)
Q Consensus 73 ssr~iTVvn~~sGg~~s~~ivpaA~vGavGYgYmwWKGws-~sDlMfVTkr~m 124 (257)
.+-||.++++... ..++.-|.-.||.+|. -|-++ ...+.-+-++-+
T Consensus 76 ~~~pii~lt~~~~---~~~~~~a~~~ga~~yl---~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 76 SETPIIVLSGAGV---MSDAVEALRLGAADYL---IKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp CCCCEEEC---CH---HHHHHHHHHHTCSEEC---CSSCSCTHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCC---HHHHHHHHhcChhhEE---ECCCChHHHHHHHHHHHH
Confidence 4457777764332 1345555566776654 57663 333433333333
No 296
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.56 E-value=2.5e+02 Score=27.71 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=9.7
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHH
Q 025130 150 TQRIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV 174 (257)
.++++.+...+++.......+++++
T Consensus 365 ~~~l~~~~~~~~~l~~~~~~~~~~l 389 (695)
T 2j69_A 365 KKRIDSVEPEFNKLTGIRDEFQKEI 389 (695)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333333333
No 297
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.55 E-value=1.1e+02 Score=19.85 Aligned_cols=9 Identities=44% Similarity=0.567 Sum_probs=3.5
Q ss_pred hhHHhHHHH
Q 025130 155 NLNDKVEKQ 163 (257)
Q Consensus 155 ~vd~kld~~ 163 (257)
.|.+|.++.
T Consensus 5 QLEdkVEeL 13 (34)
T 2hy6_A 5 QLADAVEEL 13 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333343333
No 298
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=20.54 E-value=2.3e+02 Score=25.87 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhhhhhhhhhhh
Q 025130 186 HNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.|++.|.+++..|-.|+++|-.
T Consensus 244 ~~l~~vd~l~~~Lq~klDRI~s 265 (287)
T 1t98_A 244 DDLHFVDRLVFDLQSKLDRIIS 265 (287)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 4566778888899999998754
No 299
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=20.45 E-value=1e+02 Score=19.91 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=17.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 025130 131 LNKHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 131 v~kqLeqVs~sL~~tKkhLsqR 152 (257)
++.+|.++..+|++++.||.+=
T Consensus 10 IS~eL~~~n~sl~~A~~~l~~S 31 (38)
T 1svf_B 10 ISQNLAAVNKSLSDALQHLAQS 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887653
No 300
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.31 E-value=4.5e+02 Score=25.84 Aligned_cols=27 Identities=4% Similarity=0.123 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025130 159 KVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 159 kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
++++..+--+.+++...+++..+.++.
T Consensus 367 ~l~~~~~~~~~l~~~~~~~~~~l~~~~ 393 (695)
T 2j69_A 367 RIDSVEPEFNKLTGIRDEFQKEIINTR 393 (695)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444333
No 301
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=20.24 E-value=4.2e+02 Score=22.87 Aligned_cols=46 Identities=28% Similarity=0.292 Sum_probs=28.5
Q ss_pred HHHHHHHHHHH---HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025130 163 QNEISKDIRKN---VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 163 ~~eis~~i~~e---V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
..|.+..++.- -.++-++.++--...+..+..+..+|.|+..++.+
T Consensus 91 s~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~k 139 (201)
T 3u0c_A 91 NLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTR 139 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34454444533 33444555556667777788888888888877654
No 302
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.23 E-value=75 Score=27.87 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025130 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 130 sv~kqLeqVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
++.++|.+++..+..| =++.+..+-|+-..+.+.-.++=+|+.-.+.++..|++++..-.+.|-. ..|...|
T Consensus 4 ~L~~dls~Lsq~m~~~------LLe~i~~~YddY~~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~qL~~--~~i~~Tr 75 (204)
T 2jqq_A 4 SLIRDLSGLSQKMVQT------LLEQIRSNYDDYLTFSNTYTDEENETLINLEKTQSDLQKFMTQLDHLIK--DDISNTQ 75 (204)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHHHHHHHH--HSCSTTH
T ss_pred hHHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHH
Confidence 3445555555544444 2567778888888888888887788888888888998888666655543 3566788
Q ss_pred HHHhHHHHHHHHH---hh-ccc-CCChHHHH
Q 025130 210 DITNIGMYLLCNF---VD-GKK-GRTTESMQ 235 (257)
Q Consensus 210 d~tn~GV~~Lc~f---~~-~~~-~~~~~~~q 235 (257)
+..+.-|.||=.- .+ .++ ..+|+.|+
T Consensus 76 e~v~d~l~YLkkLD~l~~~Lq~h~~Lse~l~ 106 (204)
T 2jqq_A 76 EIIKDVLEYLKKLDEIYGSLRNHSQLTEALS 106 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8888888888542 22 333 55677654
No 303
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=20.17 E-value=3.6e+02 Score=22.08 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhhhhhhhh
Q 025130 189 KDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie~ 207 (257)
...-..|..+|.+.+.++.
T Consensus 160 ~~~~~~i~~lE~~~D~l~~ 178 (227)
T 2olt_A 160 AKMINELDIIEEDTDDLQI 178 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455666777766554
No 304
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=20.16 E-value=1.5e+02 Score=24.01 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 025130 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (257)
Q Consensus 137 qVs~sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (257)
+|++.|+.==.+|..| ++.++.....+...|+++|.++++
T Consensus 22 qvsedLrrrIe~LkrK---V~~Qvq~i~~Lq~nVrdQvveMkR 61 (119)
T 1lwu_A 22 EVLRELERRIIHLQRR---INMQLQQLTLLQHNIKTQVSQILR 61 (119)
T ss_dssp HHHTTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444455554 455777788888899998887765
No 305
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=20.07 E-value=29 Score=34.63 Aligned_cols=11 Identities=45% Similarity=1.325 Sum_probs=9.5
Q ss_pred hheeeeeeecc
Q 025130 101 LGYGYMWWKGL 111 (257)
Q Consensus 101 vGYgYmwWKGw 111 (257)
+-|+|.||||.
T Consensus 522 vty~~f~wkgk 532 (584)
T 4dpv_Z 522 VTYSDFWWKGK 532 (584)
T ss_dssp CEEEEEEEEEE
T ss_pred EEEeeEEEccE
Confidence 57999999994
No 306
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=20.07 E-value=1.7e+02 Score=26.63 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhHHHHHHHHHhh
Q 025130 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
+....++++.++.+-+++++.-+.++-.+|..=.--|+-+-..|. ..-||.|+.
T Consensus 380 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 433 (463)
T 2xz3_A 380 LIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLYIRLG-----FQSLCPTIN 433 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHhC-----cCccchhhc
Confidence 345666667777777777777777777777655555666655554 335677664
No 307
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.06 E-value=2.9e+02 Score=20.87 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=34.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHH--hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025130 132 NKHLESVTEALTVAKKHLTQRIQNLND--KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 132 ~kqLeqVs~sL~~tKkhLsqRI~~vd~--kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
+.-+++--+-....-..++++|..+-. .-++-+.....++..+.++.+=|.++.-++.++.
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444444444555555556666665521 1244455666666666666666666666665553
Done!