BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025131
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4,
chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1
Length = 305
Score = 347 bits (889), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 173/257 (67%), Positives = 194/257 (75%), Gaps = 38/257 (14%)
Query: 39 FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
F+SP+ GS+SSD G +LR + LNP +F SKP+ V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49 FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108
Query: 99 YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
YL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168
Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQAT 218
FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQAT
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228
Query: 219 DVEIARKEMKNVKAEL--------------------------------------VLYTEK 240
DVEIARKE+K++K E+ V+Y E+
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNER 288
Query: 241 SPEDHGVVSDLKKAQLI 257
+D GVVSDLKKAQLI
Sbjct: 289 GSQDRGVVSDLKKAQLI 305
>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR
PE=3 SV=1
Length = 225
Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 110/159 (69%), Gaps = 11/159 (6%)
Query: 88 AWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIY 137
A++ PPPDL S L K RIVYLGM S VT+LI+A+ LYLQ++D +KPIY
Sbjct: 15 AFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIY 74
Query: 138 LYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR 196
YINSTGT+ G+ +G+ETEAFAI D + Y+KPP+ T+C+G A G AA++L +G KG R
Sbjct: 75 FYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYR 134
Query: 197 AALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV 235
A+LP +TI++ Q +GQATD++I KE+ + K ++
Sbjct: 135 ASLPHATIVLNQNRTGAQGQATDIQIRAKEVISNKQTML 173
>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechococcus elongatus (strain PCC 7942) GN=clpR
PE=3 SV=1
Length = 228
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 104/155 (67%), Gaps = 12/155 (7%)
Query: 102 KNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGE 150
K RI+YLGM S VTELI+A+ LYL++++ EKPIY YINSTGT+ G+
Sbjct: 31 KERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGD 90
Query: 151 KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210
+GYETEAFAI D M Y+KPP+ T+C+G A G AA++L G GNRA+LP +TI++ QP
Sbjct: 91 AIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQPR 150
Query: 211 GRIEGQATDVEIARKE-MKNVKAELVLYTEKSPED 244
+GQA+D++I KE + N + L ++ + +D
Sbjct: 151 TGAQGQASDIQIRAKEVLANKRTMLEIFARNTGQD 185
>sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3,
chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1
Length = 330
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 102/150 (68%), Gaps = 6/150 (4%)
Query: 92 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGE 150
PPPDL S L RIVY+GM VP+VTEL++AE +YLQ+ D ++PIY+YINSTGTT+ GE
Sbjct: 118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGE 177
Query: 151 KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210
+G E+E FAIYD + +K + T+CVG A G+A LLL AG KG R +P + MI+QP
Sbjct: 178 TVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPR 237
Query: 211 GRIEG--QATDVEIARKEM---KNVKAELV 235
G A+DV I KE+ +++ EL+
Sbjct: 238 VPSSGLMPASDVLIRAKEVITNRDILVELL 267
>sp|Q9X5N0|CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus GN=clpP2 PE=3 SV=1
Length = 206
Score = 130 bits (327), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 89/140 (63%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV LG V +I+A+ L+L+ ED +K I LYINS G G
Sbjct: 21 DIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GS 72
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M YVK P+ T+CVG A A+LL AGAKG R ALPSS IMI QP+G +
Sbjct: 73 VTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVR 132
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQATD+EI KE+ +KA+L
Sbjct: 133 GQATDIEIQAKEILRMKAKL 152
>sp|Q1DAT0|CLPP1_MYXXD ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1
Length = 206
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 89/140 (63%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV LG V +I+A+ L+L+ ED +K I LYINS G G
Sbjct: 21 DIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GS 72
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M YVK P+ T+CVG A A+LL AGAKG R ALPSS IMI QP+G +
Sbjct: 73 VTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVR 132
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQATD+EI KE+ +KA+L
Sbjct: 133 GQATDIEIQAKEILRMKAKL 152
>sp|Q2LTK5|CLPP_SYNAS ATP-dependent Clp protease proteolytic subunit OS=Syntrophus
aciditrophicus (strain SB) GN=clpP PE=3 SV=1
Length = 194
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 91/142 (64%), Gaps = 8/142 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI++LG V LI+A+ L+L+ ED +K I+ Y+N+ G G+
Sbjct: 19 DIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFFYLNTPG--------GH 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
+ AIYD M Y+KPP+ T+CVG A ALLL AG +G R+ALP S I+I QP+G +
Sbjct: 71 ISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILIHQPLGGFQ 130
Query: 215 GQATDVEIARKEMKNVKAELVL 236
GQATD++I +E+ +K EL L
Sbjct: 131 GQATDIDIQAREILRLKDELSL 152
>sp|B0K533|CLPP_THEPX ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3
SV=1
Length = 195
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG + L++A+ L+L+ ED +K I+LYINS G G
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T FAIYD M Y+KP + TLCVG A AA LL AGAKG R ALP+S IMI QP+G ++
Sbjct: 71 ITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQATD++I + + ++ +L
Sbjct: 131 GQATDIKIHAERILKLRDKL 150
>sp|B0KBA4|CLPP_THEP3 ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=clpP PE=3 SV=1
Length = 195
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG + L++A+ L+L+ ED +K I+LYINS G G
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T FAIYD M Y+KP + TLCVG A AA LL AGAKG R ALP+S IMI QP+G ++
Sbjct: 71 ITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQATD++I + + ++ +L
Sbjct: 131 GQATDIKIHAERILKLRDKL 150
>sp|A0LEF1|CLPP_SYNFM ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1
Length = 202
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L ++RI++LG + V +I+A+ L+L+ ED +K I+ YINS G G
Sbjct: 19 DIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPG--------GL 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M ++KP + TLC+G A AA+LL AG KG R ALP IM+ QP+G +
Sbjct: 71 VTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQPMGGFQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQATDVEI KE+ ++ EL
Sbjct: 131 GQATDVEIQAKEILKLREEL 150
>sp|O67357|CLPP_AQUAE ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus
(strain VF5) GN=clpP PE=3 SV=1
Length = 201
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 88/141 (62%), Gaps = 8/141 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L ++RIV LG V LI+A+ L+L+ +D +K IYLYINS G G
Sbjct: 26 DIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYLYINSPG--------GS 77
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M Y+KP + T+C+G A A+LL AGA G R ALP S IMI QP+G I+
Sbjct: 78 VTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPGKRYALPHSRIMIHQPLGGIQ 137
Query: 215 GQATDVEIARKEMKNVKAELV 235
GQATD+ I +E+K +K L+
Sbjct: 138 GQATDIIIHAEEIKRIKEMLI 158
>sp|B5YI38|CLPP_THEYD ATP-dependent Clp protease proteolytic subunit
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=clpP PE=3 SV=1
Length = 195
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 84/137 (61%), Gaps = 8/137 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+++G V +++A+ L+LQ ED EK I++YINS G G
Sbjct: 19 DIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPG--------GM 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
+ AIYD M YVKP I T C+G A A +LL AG KG R ALP S +MI QPIG
Sbjct: 71 VSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMIHQPIGGFY 130
Query: 215 GQATDVEIARKEMKNVK 231
GQATDVEI KE+ +K
Sbjct: 131 GQATDVEIHAKEILKMK 147
>sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1,
chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1
Length = 387
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 90/137 (65%), Gaps = 2/137 (1%)
Query: 93 PPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TKGGEK 151
PPDL S L RI YLGM VP+VTEL++A+F++L Y++ KPIYLYINS GT + E
Sbjct: 169 PPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMET 228
Query: 152 LGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP-I 210
+G ETEA+AI D + Y K ++T+ G A+G+AA+LL G KG RA P S+ + P +
Sbjct: 229 VGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKV 288
Query: 211 GRIEGQATDVEIARKEM 227
R G A D+ I KE+
Sbjct: 289 NRSSGAAIDMWIKAKEL 305
>sp|A7HZE8|CLPP_CAMHC ATP-dependent Clp protease proteolytic subunit OS=Campylobacter
hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 /
CH001A) GN=clpP PE=3 SV=1
Length = 195
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M +P+ T+ + D+ S L K+RIV L V ++A+ L+L+ ED +K IY
Sbjct: 1 MFVPYVIERTSRGERSYDIYSRLLKDRIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIY 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T F+IYD M Y+KP + T+C+G A A LL G KG R
Sbjct: 61 LYINSPG--------GVVTSGFSIYDTMNYIKPAVSTICIGQAASMGAFLLSCGEKGKRY 112
Query: 198 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
ALP++ IMI QP+G +GQATD+EI KE+ +KA L
Sbjct: 113 ALPNARIMIHQPLGGAQGQATDIEITTKEILRIKATL 149
>sp|O30612|CLPP2_MYXXD ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1
Length = 203
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 93/155 (60%), Gaps = 9/155 (5%)
Query: 79 MVIPFTSGTAWE-QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M +PF T + DL S L K+RI+ LG V +I+A+ L+L+ ED +K I
Sbjct: 1 MNVPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGIN 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T AIYD M YVK P+ T+CVG A ALLL AGAKG R
Sbjct: 61 LYINSPG--------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRY 112
Query: 198 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKA 232
ALP+S IMI QP+G +GQATD++I KE+ +++
Sbjct: 113 ALPNSRIMIHQPLGGAQGQATDIDIQAKEILRLRS 147
>sp|Q8RC25|CLPP_THETN ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=clpP PE=3 SV=2
Length = 195
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 89/140 (63%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV+LG + L++A+ L+L+ ED +K I+LYINS G G
Sbjct: 19 DIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M Y+KP + TLCVG A AA LL AGAKG R ALP+S IMI QP G ++
Sbjct: 71 ITAGLAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQATD++I + + ++ +L
Sbjct: 131 GQATDIKIHAERLLRLRDKL 150
>sp|Q6D827|CLPP_ERWCT ATP-dependent Clp protease proteolytic subunit OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=clpP PE=3 SV=1
Length = 207
Score = 124 bits (311), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 8/166 (4%)
Query: 69 KSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQ 128
+ + ++P + +V TA + D+ S L K RI++L + L++A+ L+L+
Sbjct: 6 EQERQAPHMALVPMVVEQTARGERSYDIYSRLLKERIIFLTGQVEDYMANLVVAQMLFLE 65
Query: 129 YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 188
E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A A LL
Sbjct: 66 AENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLL 117
Query: 189 GAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
AGAKG R LP+S +MI QP+G +GQATD+EI KE+ VKA++
Sbjct: 118 TAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKM 163
>sp|A1AN85|CLPP_PELPD ATP-dependent Clp protease proteolytic subunit OS=Pelobacter
propionicus (strain DSM 2379) GN=clpP PE=3 SV=1
Length = 199
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 85/140 (60%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K RI++LG V LI+A+ L+L+ ED +K I+LYINS G G
Sbjct: 18 DIYSRLLKERIIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLYINSPG--------GV 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M Y+K P+ T+CVG A A+LL AG KG R +L S IMI QP+G +
Sbjct: 70 VTSGMAIYDTMRYIKAPVSTICVGQAASMGAVLLAAGEKGKRFSLNHSRIMIHQPLGGFQ 129
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQATD+ I KE+ +K EL
Sbjct: 130 GQATDISIHAKEILRMKEEL 149
>sp|B8F822|CLPP_HAEPS ATP-dependent Clp protease proteolytic subunit OS=Haemophilus
parasuis serovar 5 (strain SH0165) GN=clpP PE=3 SV=1
Length = 193
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 11/159 (6%)
Query: 76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKP 135
VI MV+ +S + D+ S L K RI++L + +LI+A+ L+L+ ED EK
Sbjct: 3 VIPMVVEQSSKG---ERAYDIYSRLLKERIIFLNGGVEDEMAKLIIAQMLFLEAEDPEKD 59
Query: 136 IYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGN 195
IYLYINS G G T AIYD M ++KP + TLC+G A A LL AGAKG
Sbjct: 60 IYLYINSPG--------GVVTAGLAIYDTMNFIKPDVSTLCMGQACSMGAFLLSAGAKGK 111
Query: 196 RAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
R ALP+S +MI QP+G GQATD++I +E+ +K L
Sbjct: 112 RFALPNSRVMIHQPLGGYRGQATDIQIHAQEILKLKEML 150
>sp|C0QGT0|CLPP_DESAH ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium
autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)
GN=clpP PE=3 SV=1
Length = 205
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 11/160 (6%)
Query: 75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
P+I MV+ ++ + D+ S L K+RI++LG + V LI+A+ L+L+ ED EK
Sbjct: 2 PLIPMVVEQSN---RGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEK 58
Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
I YINS G G T A+YD M Y+KP + T+C+G A ALLL AGAKG
Sbjct: 59 DINFYINSPG--------GVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKG 110
Query: 195 NRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
R +LP+S IMI QP+G +GQA+D++I E+ +K L
Sbjct: 111 KRFSLPNSRIMIHQPLGGAQGQASDIKIQANEILRMKEVL 150
>sp|A4J7L9|CLPP_DESRM ATP-dependent Clp protease proteolytic subunit OS=Desulfotomaculum
reducens (strain MI-1) GN=clpP PE=3 SV=1
Length = 195
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 87/137 (63%), Gaps = 8/137 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+++G + L++A+FL+L+ ED EK I+LYINS G G
Sbjct: 20 DIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPG--------GV 71
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M Y+KP + T+C+G A + LL AGA G R ALP + IMI QP+G ++
Sbjct: 72 VTAGLAIYDTMQYIKPAVSTICLGQAASMGSFLLAAGAPGKRYALPMARIMIHQPLGGVQ 131
Query: 215 GQATDVEIARKEMKNVK 231
GQATD++I KE+ +K
Sbjct: 132 GQATDIDIHAKEILRMK 148
>sp|C6E2T0|CLPP_GEOSM ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp.
(strain M21) GN=clpP PE=3 SV=1
Length = 199
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M++P T + D+ S L K+RI++LG +V L++A+ L+L+ ED +K I+
Sbjct: 1 MLVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIH 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T AIYD M Y+K P+ T+CVG A A LL G KG R
Sbjct: 61 LYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRY 112
Query: 198 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
+L +S IMI QP+G +GQATD+ I KE+ +K EL
Sbjct: 113 SLVNSRIMIHQPLGGFQGQATDIHIHAKEILRMKDEL 149
>sp|B9M0Y1|CLPP_GEOSF ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp.
(strain FRC-32) GN=clpP PE=3 SV=1
Length = 199
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 9/157 (5%)
Query: 79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M++P T + D+ S L K+RI++LG + +V+ L++A+ L+L+ ED +K I+
Sbjct: 1 MLVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIH 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T AIYD M Y+K P+ T+CVG A A LL G KG R
Sbjct: 61 LYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRF 112
Query: 198 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
+L +S IMI QP+G +GQATD+ I +E+ +K +L
Sbjct: 113 SLANSRIMIHQPLGGFQGQATDIHIHAQEILRMKKKL 149
>sp|A4XHW0|CLPP_CALS8 ATP-dependent Clp protease proteolytic subunit
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=clpP PE=3 SV=1
Length = 195
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 86/140 (61%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RIV L + LI+A+ L+L+ ED +K IYLYINS G G
Sbjct: 20 DIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPG--------GS 71
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T FAIYD + Y+KP + T+CVG A A LL AGAKG R ALP+S IMI QPIG +
Sbjct: 72 VTAGFAIYDTIQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPIGGVR 131
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQATD++I + + +K +
Sbjct: 132 GQATDIKIHAEWILKIKQRI 151
>sp|Q49VZ2|CLPP_STAS1 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=clpP PE=3 SV=1
Length = 194
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI QP+G +
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQAT++EIA + +A+L
Sbjct: 131 GQATEIEIAANHILKTRAKL 150
>sp|Q30NX1|CLPP_SULDN ATP-dependent Clp protease proteolytic subunit OS=Sulfurimonas
denitrificans (strain ATCC 33889 / DSM 1251) GN=clpP
PE=3 SV=1
Length = 196
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 90/155 (58%), Gaps = 9/155 (5%)
Query: 81 IPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLY 139
IP+ TA + D+ S L K+RI+ L +V I+A+ L+L+ ED EK IY Y
Sbjct: 4 IPYVVEKTARGERSYDIYSRLLKDRIIMLSGEVNDAVASSIVAQMLFLEAEDPEKDIYFY 63
Query: 140 INSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL 199
INS G G T AIYD M Y++P + T+CVG A A LL +GAKG R AL
Sbjct: 64 INSPG--------GVVTAGMAIYDTMNYIRPDVATICVGQAASMGAFLLSSGAKGKRYAL 115
Query: 200 PSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
P + IMI QP+G +GQATD+ I KE+ +K EL
Sbjct: 116 PHARIMIHQPLGGAQGQATDIAIQAKEILRMKEEL 150
>sp|B9DJL4|CLPP_STACT ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
carnosus (strain TM300) GN=clpP PE=3 SV=1
Length = 194
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG + +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T FAIYD + ++KP + T+C+G A + LL AGAKG R ALP++ +MI QP+G +
Sbjct: 71 VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQAT++EIA + +A+L
Sbjct: 131 GQATEIEIAATHILKTRAKL 150
>sp|C5BCJ6|CLPP_EDWI9 ATP-dependent Clp protease proteolytic subunit OS=Edwardsiella
ictaluri (strain 93-146) GN=clpP PE=3 SV=1
Length = 206
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 66 SFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFL 125
S+ + +P + +V T+ + D+ S L K RI++L + LI+A+ L
Sbjct: 2 SYSDQRELAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQML 61
Query: 126 YLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA 185
+L+ E+ EK I+LYINS G G T +IYD M ++KP + T+C+G A +
Sbjct: 62 FLEAENPEKDIHLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQACSMGS 113
Query: 186 LLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
LL AGA+G R LP+S +MI QP+G +GQATD+EI KE+ ++KA +
Sbjct: 114 FLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILSIKARM 162
>sp|A5GFA0|CLPP_GEOUR ATP-dependent Clp protease proteolytic subunit OS=Geobacter
uraniireducens (strain Rf4) GN=clpP PE=3 SV=1
Length = 199
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 9/157 (5%)
Query: 79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M++P T + D+ S L K+RIV+LG + +++ L++A+ L+L+ ED +K I+
Sbjct: 1 MLVPIVVEQTGRGERSYDIYSRLLKDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIH 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T AIYD M Y+K P+ T+CVG A A LL G KG R
Sbjct: 61 LYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRF 112
Query: 198 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
+L +S IMI QP+G +GQATD+ I +E+ +K +L
Sbjct: 113 SLTNSRIMIHQPLGGFQGQATDIHIHAQEILRMKKKL 149
>sp|B5EI27|CLPP_GEOBB ATP-dependent Clp protease proteolytic subunit OS=Geobacter
bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
GN=clpP PE=3 SV=1
Length = 199
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
M++P T + D+ S L K+RI++LG +V L++A+ L+L+ ED +K I+
Sbjct: 1 MLVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIH 60
Query: 138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 197
LYINS G G T AIYD M Y+K P+ T+CVG A A LL G KG R
Sbjct: 61 LYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRY 112
Query: 198 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
+L +S IMI QP+G +GQATD+ I KE+ +K +L
Sbjct: 113 SLVNSRIMIHQPLGGFQGQATDIHIHAKEILRMKDQL 149
>sp|B1L812|CLPP_THESQ ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp.
(strain RQ2) GN=clpP PE=3 SV=1
Length = 203
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 76 VITMVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
+I +P T + D+ S L K+RIV+LG V L++A+ L+L+ ED +K
Sbjct: 8 IIDQYVPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDK 67
Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
+YLYINS G G T AIYD M Y+K + T+CVG A AA+LL AGAKG
Sbjct: 68 DVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKG 119
Query: 195 NRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVK 231
R ALP++ IMI QP+G EG A DVEI +E+ +K
Sbjct: 120 KRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIK 156
>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=clpP PE=3 SV=1
Length = 203
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 76 VITMVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
+I +P T + D+ S L K+RIV+LG V L++A+ L+L+ ED +K
Sbjct: 8 IIDQYVPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDK 67
Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
+YLYINS G G T AIYD M Y+K + T+CVG A AA+LL AGAKG
Sbjct: 68 DVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKG 119
Query: 195 NRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVK 231
R ALP++ IMI QP+G EG A DVEI +E+ +K
Sbjct: 120 KRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIK 156
>sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=clpP PE=3 SV=1
Length = 203
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 76 VITMVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
+I +P T + D+ S L K+RIV+LG V L++A+ L+L+ ED +K
Sbjct: 8 IIDQYVPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDK 67
Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
+YLYINS G G T AIYD M Y+K + T+CVG A AA+LL AGAKG
Sbjct: 68 DVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKG 119
Query: 195 NRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVK 231
R ALP++ IMI QP+G EG A DVEI +E+ +K
Sbjct: 120 KRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIK 156
>sp|C4XH03|CLPP_DESMR ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio
magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
GN=clpP PE=3 SV=1
Length = 202
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L ++RI+ LG + V LI A+ L+L+ ED EK I++YINS G G
Sbjct: 19 DIYSRLLRDRIILLGSAVDDYVANLICAQLLFLESEDPEKEIFMYINSPG--------GV 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
+ AIYD M YV PP+ TLC+G A ALLL AGA G R ALP S IMI QP G +
Sbjct: 71 VSAGLAIYDTMQYVMPPVSTLCLGQAASMGALLLCAGATGMRYALPHSRIMIHQPSGGYQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQATD+EI KE + + L
Sbjct: 131 GQATDIEIHAKETRRTRETL 150
>sp|B8DNL4|CLPP_DESVM ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio
vulgaris (strain Miyazaki F / DSM 19637) GN=clpP PE=3
SV=1
Length = 201
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG V LI A+ L+L+ E+ EK IYLYINS G G
Sbjct: 18 DIYSRLLKDRIILLGTPIDDQVASLICAQLLFLESENPEKEIYLYINSPG--------GS 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M Y+ P+ TLC+G A ALLL AGA G R ALP+S IMI QP G
Sbjct: 70 VTAGMAIYDTMQYITSPVATLCLGQAASMGALLLAAGAPGMRHALPNSRIMIHQPSGGFH 129
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQA+D++I +E+ +KA L
Sbjct: 130 GQASDIDIHAREVLRMKANL 149
>sp|Q3A3X5|CLPP_PELCD ATP-dependent Clp protease proteolytic subunit OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3
SV=1
Length = 194
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 86/140 (61%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI++LG + V LI+A+ L+L+ ED EK I+LYINS G G
Sbjct: 19 DIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPG--------GV 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M YV+ P+ TLCVG A A+LL AG +G R ALP + IMI QP G +
Sbjct: 71 VTAGMAIYDTMQYVRCPVSTLCVGQAASMGAVLLAAGGEGKRFALPHARIMIHQPWGGFQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQATD+ I +E+ ++ L
Sbjct: 131 GQATDINIHAQEILRLRETL 150
>sp|B9EAG5|CLPP_MACCJ ATP-dependent Clp protease proteolytic subunit OS=Macrococcus
caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1
Length = 194
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 88/140 (62%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI+ LG + +V I+++ L+LQ +D EK IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M ++KP + T+C+G A + LL AGAKG R ALP++ +MI QP+G +
Sbjct: 71 VTAGMAIYDTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQAT++EIA + + + +L
Sbjct: 131 GQATEIEIAARHILKTREKL 150
>sp|Q2RL31|CLPP_MOOTA ATP-dependent Clp protease proteolytic subunit OS=Moorella
thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1
Length = 199
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 8/140 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI++LG + V L++A+ L+L+ ED +K I+LYINS G G
Sbjct: 20 DIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPG--------GS 71
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
+ AI+D M Y++P + T+CVG A A LL AGAKG R ALP+S IMI QP+G +
Sbjct: 72 ISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQ 131
Query: 215 GQATDVEIARKEMKNVKAEL 234
GQA D+EI K + ++ L
Sbjct: 132 GQAVDIEIHAKRILAIRDNL 151
>sp|A5D447|CLPP_PELTS ATP-dependent Clp protease proteolytic subunit OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=clpP PE=3 SV=1
Length = 194
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 8/137 (5%)
Query: 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
D+ S L K+RI++LG + LI+A+ L+L+ ED EK I YINS G G
Sbjct: 19 DIYSRLLKDRIIFLGGPIDDNTANLIIAQMLFLEAEDPEKDIQFYINSPG--------GV 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
T AIYD M YV+ P+ T+C+G A A+LLL AGAKG R +LP + I+I QP+G ++
Sbjct: 71 VTAGMAIYDTMQYVRSPVATICIGQAASMASLLLAAGAKGKRYSLPYARILIHQPLGGVQ 130
Query: 215 GQATDVEIARKEMKNVK 231
GQATD+EI KE+ ++
Sbjct: 131 GQATDIEIHAKEILRMR 147
>sp|Q3Z4W6|CLPP_SHISS ATP-dependent Clp protease proteolytic subunit OS=Shigella sonnei
(strain Ss046) GN=clpP PE=3 SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
>sp|P0A6H0|CLPP_SHIFL ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri
GN=clpP PE=3 SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
>sp|Q0T7E6|CLPP_SHIF8 ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri
serotype 5b (strain 8401) GN=clpP PE=3 SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
>sp|Q32JJ3|CLPP_SHIDS ATP-dependent Clp protease proteolytic subunit OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=clpP PE=3 SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
>sp|Q325G4|CLPP_SHIBS ATP-dependent Clp protease proteolytic subunit OS=Shigella boydii
serotype 4 (strain Sb227) GN=clpP PE=3 SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
>sp|Q1RF98|CLPP_ECOUT ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
(strain UTI89 / UPEC) GN=clpP PE=3 SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
>sp|P0A6G7|CLPP_ECOLI ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
(strain K12) GN=clpP PE=1 SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
>sp|B1J011|CLPP_ECOLC ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=clpP PE=3 SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
>sp|P0A6G8|CLPP_ECOL6 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=clpP PE=3
SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
>sp|Q0TKK4|CLPP_ECOL5 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=clpP PE=3 SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
>sp|A1A8A6|CLPP_ECOK1 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O1:K1 / APEC GN=clpP PE=3 SV=1
Length = 207
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 18/183 (9%)
Query: 65 DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
D+F P ++ MVI TS + D+ S L K R+++L + LI+A+
Sbjct: 8 DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184
L+L+ E+ EK IYLYINS G G T +IYD M ++KP + T+C+G A
Sbjct: 62 LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
A LL AGAKG R LP+S +MI QP+G +GQATD+EI +E+ VK + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
S E
Sbjct: 174 SLE 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,096,448
Number of Sequences: 539616
Number of extensions: 4129971
Number of successful extensions: 11667
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 10091
Number of HSP's gapped (non-prelim): 799
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)