Query 025131
Match_columns 257
No_of_seqs 207 out of 1388
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 6.1E-59 1.3E-63 419.4 18.7 157 91-255 80-238 (275)
2 COG0740 ClpP Protease subunit 100.0 2E-55 4.3E-60 386.5 18.1 167 76-253 3-170 (200)
3 PRK12552 ATP-dependent Clp pro 100.0 1.3E-54 2.9E-59 387.0 19.8 178 78-255 5-194 (222)
4 PRK14513 ATP-dependent Clp pro 100.0 2.1E-52 4.5E-57 368.1 20.0 168 77-255 4-172 (201)
5 PRK14514 ATP-dependent Clp pro 100.0 9.3E-52 2E-56 368.6 19.3 169 76-255 30-199 (221)
6 CHL00028 clpP ATP-dependent Cl 100.0 2.7E-51 5.8E-56 360.5 20.4 167 81-255 8-176 (200)
7 PRK12551 ATP-dependent Clp pro 100.0 1.6E-50 3.5E-55 354.7 19.0 161 87-255 9-170 (196)
8 TIGR00493 clpP ATP-dependent C 100.0 2.5E-46 5.4E-51 326.0 18.8 162 87-256 10-172 (191)
9 PRK00277 clpP ATP-dependent Cl 100.0 4.1E-44 8.9E-49 313.8 19.6 162 86-255 14-176 (200)
10 PRK14512 ATP-dependent Clp pro 100.0 1E-43 2.2E-48 311.5 19.5 160 89-256 9-169 (197)
11 PRK12553 ATP-dependent Clp pro 100.0 3.6E-42 7.9E-47 303.1 18.5 170 76-256 11-183 (207)
12 PF00574 CLP_protease: Clp pro 100.0 1.4E-41 3E-46 290.2 14.0 158 90-255 3-161 (182)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 6.4E-40 1.4E-44 279.7 16.7 153 95-255 1-154 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 1.2E-37 2.5E-42 264.5 17.8 144 104-255 1-145 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 99.9 2E-25 4.4E-30 187.0 16.3 138 105-255 2-143 (160)
16 cd07015 Clp_protease_NfeD Nodu 99.9 2.2E-21 4.8E-26 167.5 16.1 135 105-255 3-145 (172)
17 cd00394 Clp_protease_like Case 99.9 4.7E-21 1E-25 159.8 14.7 140 105-254 1-143 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.8 3.6E-18 7.7E-23 147.6 16.2 137 105-252 3-142 (187)
19 cd07021 Clp_protease_NfeD_like 99.7 4.2E-16 9.2E-21 134.9 15.1 136 105-255 3-138 (178)
20 cd07023 S49_Sppa_N_C Signal pe 99.2 2.7E-10 5.9E-15 99.5 13.0 141 105-255 4-181 (208)
21 TIGR00706 SppA_dom signal pept 99.1 2.8E-09 6.2E-14 93.5 15.1 140 105-255 4-176 (207)
22 cd07014 S49_SppA Signal peptid 98.9 2.4E-08 5.1E-13 85.3 13.4 122 116-254 23-148 (177)
23 TIGR00705 SppA_67K signal pept 98.9 4.9E-08 1.1E-12 98.3 15.3 141 105-255 312-492 (584)
24 cd07022 S49_Sppa_36K_type Sign 98.8 1E-07 2.2E-12 84.0 14.8 129 114-252 24-185 (214)
25 COG0616 SppA Periplasmic serin 98.7 2.7E-08 5.9E-13 93.2 8.2 79 117-205 82-162 (317)
26 cd07019 S49_SppA_1 Signal pept 98.7 4E-07 8.7E-12 80.2 14.2 127 117-253 23-182 (211)
27 PF01972 SDH_sah: Serine dehyd 98.5 1.1E-06 2.4E-11 81.5 11.3 89 109-210 69-157 (285)
28 cd07018 S49_SppA_67K_type Sign 98.1 6.4E-05 1.4E-09 66.7 13.2 89 110-209 24-115 (222)
29 COG1030 NfeD Membrane-bound se 97.9 0.00015 3.2E-09 71.2 12.4 97 104-211 29-128 (436)
30 PRK11778 putative inner membra 97.9 5.2E-05 1.1E-09 72.1 8.9 91 105-205 94-188 (330)
31 PRK10949 protease 4; Provision 97.8 0.00042 9.1E-09 70.8 14.6 141 104-254 329-509 (618)
32 COG3904 Predicted periplasmic 96.0 0.046 1E-06 49.7 9.1 99 101-212 72-173 (245)
33 TIGR00513 accA acetyl-CoA carb 96.0 0.037 7.9E-07 52.7 8.9 109 102-217 122-238 (316)
34 PRK05724 acetyl-CoA carboxylas 95.8 0.076 1.6E-06 50.6 9.9 108 101-212 121-230 (319)
35 cd06558 crotonase-like Crotona 95.8 0.059 1.3E-06 45.6 8.4 98 112-213 23-135 (195)
36 TIGR03134 malonate_gamma malon 95.7 0.1 2.3E-06 47.6 10.3 97 132-229 65-169 (238)
37 CHL00198 accA acetyl-CoA carbo 95.4 0.1 2.3E-06 49.7 9.5 102 102-212 125-233 (322)
38 PLN03229 acetyl-coenzyme A car 95.2 0.095 2E-06 54.8 9.2 104 102-212 213-321 (762)
39 PRK12319 acetyl-CoA carboxylas 95.0 0.22 4.7E-06 46.0 9.9 102 102-212 69-177 (256)
40 PLN03230 acetyl-coenzyme A car 94.6 0.16 3.6E-06 50.1 8.6 103 103-212 193-300 (431)
41 PRK06688 enoyl-CoA hydratase; 93.8 0.57 1.2E-05 42.1 9.8 96 112-212 29-137 (259)
42 PRK08258 enoyl-CoA hydratase; 92.6 1.2 2.6E-05 40.7 10.1 96 112-212 41-154 (277)
43 PRK06072 enoyl-CoA hydratase; 92.5 1.2 2.7E-05 39.9 9.9 94 112-210 24-128 (248)
44 PRK05869 enoyl-CoA hydratase; 92.5 1.3 2.8E-05 39.3 9.9 97 112-212 31-140 (222)
45 PF00378 ECH: Enoyl-CoA hydrat 92.4 0.56 1.2E-05 41.6 7.4 95 112-210 22-129 (245)
46 TIGR00705 SppA_67K signal pept 92.3 3 6.5E-05 42.6 13.5 83 114-207 75-161 (584)
47 PRK07511 enoyl-CoA hydratase; 92.2 1.3 2.9E-05 39.9 9.7 94 112-210 27-137 (260)
48 PRK06210 enoyl-CoA hydratase; 92.0 1.2 2.6E-05 40.4 9.3 94 112-210 30-147 (272)
49 PRK03580 carnitinyl-CoA dehydr 91.9 1.2 2.5E-05 40.3 9.1 91 112-207 26-130 (261)
50 PRK05981 enoyl-CoA hydratase; 91.8 1.3 2.9E-05 40.0 9.4 97 112-212 28-144 (266)
51 TIGR01117 mmdA methylmalonyl-C 91.8 1.3 2.8E-05 44.7 10.0 102 109-212 328-433 (512)
52 PRK06495 enoyl-CoA hydratase; 91.5 1.9 4.1E-05 38.9 10.0 100 112-215 27-141 (257)
53 PRK06023 enoyl-CoA hydratase; 91.1 1.9 4E-05 38.8 9.5 94 112-210 30-136 (251)
54 PRK07260 enoyl-CoA hydratase; 91.0 2.4 5.1E-05 38.2 10.0 90 112-206 26-133 (255)
55 TIGR03189 dienoyl_CoA_hyt cycl 91.0 2.1 4.6E-05 38.7 9.7 93 112-209 24-127 (251)
56 PRK07509 enoyl-CoA hydratase; 90.9 1.9 4.1E-05 38.9 9.3 94 112-210 27-141 (262)
57 PRK07854 enoyl-CoA hydratase; 90.9 1.8 3.8E-05 38.9 9.1 89 112-206 24-121 (243)
58 PRK07468 enoyl-CoA hydratase; 90.8 2.2 4.8E-05 38.6 9.7 93 112-209 29-138 (262)
59 PRK09674 enoyl-CoA hydratase-i 90.8 2.2 4.7E-05 38.5 9.6 94 112-210 26-131 (255)
60 PRK06143 enoyl-CoA hydratase; 90.7 2 4.4E-05 38.8 9.3 94 112-210 31-139 (256)
61 PRK06190 enoyl-CoA hydratase; 90.6 2.7 5.8E-05 38.2 10.1 93 112-209 28-132 (258)
62 PRK07110 polyketide biosynthes 90.6 1.7 3.8E-05 39.0 8.8 93 112-209 29-132 (249)
63 PLN02600 enoyl-CoA hydratase 90.5 2.2 4.9E-05 38.4 9.5 92 112-208 19-125 (251)
64 PRK05864 enoyl-CoA hydratase; 90.4 2.6 5.6E-05 38.5 9.8 90 112-206 34-144 (276)
65 PRK11423 methylmalonyl-CoA dec 90.2 2.6 5.7E-05 38.2 9.7 92 112-209 28-134 (261)
66 PRK08260 enoyl-CoA hydratase; 89.8 2.5 5.4E-05 39.0 9.4 49 160-210 104-152 (296)
67 TIGR03210 badI 2-ketocyclohexa 89.8 2.9 6.3E-05 37.7 9.6 93 112-209 26-132 (256)
68 PRK08138 enoyl-CoA hydratase; 89.7 3.5 7.5E-05 37.3 10.0 92 112-208 32-135 (261)
69 PLN02664 enoyl-CoA hydratase/d 89.4 2.6 5.7E-05 38.4 9.1 49 160-210 102-150 (275)
70 TIGR02280 PaaB1 phenylacetate 89.3 3.2 7E-05 37.3 9.5 91 112-207 23-129 (256)
71 PRK05809 3-hydroxybutyryl-CoA 89.1 3.3 7.1E-05 37.3 9.4 94 112-210 28-136 (260)
72 PRK08150 enoyl-CoA hydratase; 89.0 3.7 8.1E-05 37.1 9.7 92 112-210 26-131 (255)
73 PRK10949 protease 4; Provision 88.9 1.1 2.4E-05 46.3 6.8 85 114-209 94-182 (618)
74 PRK09076 enoyl-CoA hydratase; 88.9 3.5 7.6E-05 37.2 9.4 93 112-209 26-133 (258)
75 PRK05995 enoyl-CoA hydratase; 88.8 4.3 9.3E-05 36.6 9.9 94 112-210 28-138 (262)
76 PLN02888 enoyl-CoA hydratase 88.8 4.8 0.0001 36.6 10.3 92 112-208 34-136 (265)
77 PRK05870 enoyl-CoA hydratase; 88.8 3 6.5E-05 37.5 8.8 93 112-209 27-133 (249)
78 PLN02851 3-hydroxyisobutyryl-C 88.6 3.8 8.3E-05 40.3 10.1 102 103-209 52-176 (407)
79 PRK07938 enoyl-CoA hydratase; 88.6 4.5 9.7E-05 36.4 9.9 96 112-212 25-135 (249)
80 PRK05980 enoyl-CoA hydratase; 88.6 3.1 6.6E-05 37.5 8.8 92 112-208 27-137 (260)
81 TIGR01929 menB naphthoate synt 88.3 3.9 8.5E-05 37.0 9.3 96 112-212 27-138 (259)
82 PRK06142 enoyl-CoA hydratase; 88.2 3.1 6.8E-05 37.8 8.7 94 112-210 30-148 (272)
83 PLN03214 probable enoyl-CoA hy 88.1 2.4 5.2E-05 39.0 7.9 93 112-209 35-145 (278)
84 PF01039 Carboxyl_trans: Carbo 88.1 0.77 1.7E-05 45.8 5.0 104 107-212 305-412 (493)
85 PRK08140 enoyl-CoA hydratase; 88.1 5.5 0.00012 35.9 10.1 92 112-208 28-136 (262)
86 PRK07189 malonate decarboxylas 87.9 2.7 5.8E-05 39.9 8.2 93 107-210 79-186 (301)
87 PLN02921 naphthoate synthase 87.8 5.1 0.00011 38.0 10.1 96 112-212 91-202 (327)
88 PRK06563 enoyl-CoA hydratase; 87.5 6.8 0.00015 35.2 10.3 94 112-210 23-131 (255)
89 PRK07327 enoyl-CoA hydratase; 87.3 5.7 0.00012 36.1 9.8 90 112-206 36-141 (268)
90 TIGR03133 malonate_beta malona 87.2 4.4 9.5E-05 38.0 9.1 93 107-210 70-177 (274)
91 PRK09120 p-hydroxycinnamoyl Co 87.2 5.1 0.00011 36.7 9.5 92 112-208 32-141 (275)
92 PRK09245 enoyl-CoA hydratase; 87.2 4.2 9.2E-05 36.7 8.8 48 161-210 95-142 (266)
93 PLN02988 3-hydroxyisobutyryl-C 86.9 4.7 0.0001 39.1 9.5 98 105-208 21-142 (381)
94 PRK08290 enoyl-CoA hydratase; 86.6 3.7 8E-05 37.9 8.3 51 161-213 110-160 (288)
95 PRK05617 3-hydroxyisobutyryl-C 86.5 4.8 0.0001 38.3 9.2 93 112-209 27-138 (342)
96 PRK05862 enoyl-CoA hydratase; 86.5 7.9 0.00017 34.8 10.2 92 112-208 28-131 (257)
97 PRK07658 enoyl-CoA hydratase; 86.4 5.5 0.00012 35.7 9.1 92 112-208 25-131 (257)
98 PRK07657 enoyl-CoA hydratase; 86.2 6.8 0.00015 35.3 9.7 94 112-210 28-136 (260)
99 PRK06144 enoyl-CoA hydratase; 86.1 4.6 9.9E-05 36.6 8.5 91 112-207 32-138 (262)
100 PRK05674 gamma-carboxygeranoyl 86.1 5.8 0.00013 36.0 9.2 92 112-208 30-138 (265)
101 PRK06494 enoyl-CoA hydratase; 86.1 8.2 0.00018 34.8 10.1 94 112-210 28-133 (259)
102 PRK08321 naphthoate synthase; 85.9 7.6 0.00017 36.1 10.0 47 161-209 127-174 (302)
103 PRK07396 dihydroxynaphthoic ac 85.8 6.9 0.00015 35.7 9.6 94 112-210 37-146 (273)
104 PRK08272 enoyl-CoA hydratase; 85.8 7 0.00015 36.2 9.7 44 161-206 119-162 (302)
105 PRK07112 polyketide biosynthes 85.8 7.5 0.00016 35.0 9.7 94 112-212 28-137 (255)
106 PRK12478 enoyl-CoA hydratase; 85.2 5 0.00011 37.3 8.5 48 161-210 104-151 (298)
107 PRK06127 enoyl-CoA hydratase; 84.9 9.2 0.0002 34.8 9.9 95 112-211 35-146 (269)
108 PRK06213 enoyl-CoA hydratase; 84.8 12 0.00026 33.1 10.3 92 112-209 26-130 (229)
109 PRK08788 enoyl-CoA hydratase; 84.6 5.3 0.00011 37.3 8.3 93 112-206 40-156 (287)
110 PRK08139 enoyl-CoA hydratase; 84.3 11 0.00023 34.4 10.0 96 112-212 35-145 (266)
111 PRK07827 enoyl-CoA hydratase; 84.3 9 0.0002 34.5 9.5 92 112-208 30-138 (260)
112 COG1024 CaiD Enoyl-CoA hydrata 83.9 5.1 0.00011 36.0 7.7 97 111-212 28-139 (257)
113 PLN02820 3-methylcrotonyl-CoA 83.7 8.3 0.00018 39.6 9.9 100 110-211 380-483 (569)
114 COG0825 AccA Acetyl-CoA carbox 83.5 2.4 5.1E-05 40.4 5.5 105 94-212 118-229 (317)
115 PLN02157 3-hydroxyisobutyryl-C 83.3 10 0.00022 37.3 9.9 98 104-209 48-171 (401)
116 TIGR03200 dearomat_oah 6-oxocy 82.6 9.9 0.00021 37.0 9.5 96 112-212 52-165 (360)
117 PRK07659 enoyl-CoA hydratase; 82.4 11 0.00024 34.0 9.3 92 112-209 30-136 (260)
118 TIGR00515 accD acetyl-CoA carb 81.3 10 0.00022 35.7 8.8 92 107-210 131-233 (285)
119 PRK08252 enoyl-CoA hydratase; 81.1 15 0.00033 33.0 9.6 92 112-208 27-128 (254)
120 PRK07799 enoyl-CoA hydratase; 80.8 10 0.00022 34.3 8.4 95 112-210 29-139 (263)
121 PLN02267 enoyl-CoA hydratase/i 79.9 25 0.00053 31.6 10.6 95 112-209 23-133 (239)
122 KOG1680 Enoyl-CoA hydratase [L 79.8 6.7 0.00015 37.1 7.0 99 111-212 60-168 (290)
123 PRK05654 acetyl-CoA carboxylas 79.5 16 0.00034 34.5 9.5 91 107-209 132-233 (292)
124 PLN02874 3-hydroxyisobutyryl-C 79.1 13 0.00029 35.8 9.2 104 104-212 22-146 (379)
125 PF01343 Peptidase_S49: Peptid 77.9 4.1 8.9E-05 34.1 4.6 39 166-206 3-41 (154)
126 PF06833 MdcE: Malonate decarb 77.6 7.4 0.00016 35.8 6.5 87 109-207 40-140 (234)
127 TIGR02437 FadB fatty oxidation 75.5 20 0.00043 37.6 9.8 94 112-210 31-141 (714)
128 TIGR02440 FadJ fatty oxidation 74.9 19 0.00041 37.6 9.4 92 112-208 26-135 (699)
129 PRK08259 enoyl-CoA hydratase; 74.8 17 0.00037 32.7 8.1 91 112-207 27-129 (254)
130 TIGR03222 benzo_boxC benzoyl-C 73.0 20 0.00044 36.6 8.9 44 161-206 111-156 (546)
131 PRK08184 benzoyl-CoA-dihydrodi 71.9 18 0.00039 37.0 8.3 44 161-206 115-160 (550)
132 PRK11730 fadB multifunctional 69.4 22 0.00048 37.2 8.5 94 112-210 31-141 (715)
133 PRK11154 fadJ multifunctional 67.9 41 0.00089 35.2 10.0 93 112-209 31-141 (708)
134 TIGR01117 mmdA methylmalonyl-C 61.5 37 0.00081 34.3 8.1 92 107-210 93-194 (512)
135 COG4799 Acetyl-CoA carboxylase 59.0 32 0.0007 35.2 7.1 100 108-209 336-439 (526)
136 TIGR03222 benzo_boxC benzoyl-C 58.0 67 0.0015 32.9 9.3 97 112-212 295-415 (546)
137 TIGR02441 fa_ox_alpha_mit fatt 57.4 55 0.0012 34.6 8.8 92 112-208 38-147 (737)
138 CHL00174 accD acetyl-CoA carbo 56.1 76 0.0016 30.2 8.7 92 107-210 144-247 (296)
139 PLN02820 3-methylcrotonyl-CoA 54.8 78 0.0017 32.7 9.1 99 107-209 140-244 (569)
140 TIGR02886 spore_II_AA anti-sig 54.0 65 0.0014 24.4 6.7 77 104-192 10-92 (106)
141 cd07041 STAS_RsbR_RsbS_like Su 52.1 38 0.00082 25.9 5.1 82 104-192 12-94 (109)
142 cd01834 SGNH_hydrolase_like_2 46.0 73 0.0016 25.8 6.2 67 103-180 2-72 (191)
143 PRK08184 benzoyl-CoA-dihydrodi 41.4 1.4E+02 0.0031 30.6 8.6 97 112-212 299-419 (550)
144 PF01039 Carboxyl_trans: Carbo 38.6 56 0.0012 32.7 5.1 92 107-210 68-171 (493)
145 cd06844 STAS Sulphate Transpor 36.6 1.2E+02 0.0025 22.9 5.6 39 104-144 10-48 (100)
146 KOG3439 Protein conjugation fa 33.7 1.8E+02 0.004 24.1 6.5 74 100-182 43-116 (116)
147 PF04110 APG12: Ubiquitin-like 33.0 1.2E+02 0.0027 23.7 5.2 71 100-182 14-87 (87)
148 KOG1682 Enoyl-CoA isomerase [L 33.0 1.1E+02 0.0023 28.5 5.5 43 161-205 117-159 (287)
149 cd01844 SGNH_hydrolase_like_6 31.7 1.2E+02 0.0025 25.1 5.3 20 161-180 49-68 (177)
150 PF03808 Glyco_tran_WecB: Glyc 31.2 2.4E+02 0.0053 23.9 7.3 75 93-181 33-113 (172)
151 PRK14500 putative bifunctional 29.8 27 0.00058 33.5 1.3 46 156-202 123-179 (346)
152 PF14566 PTPlike_phytase: Inos 28.7 97 0.0021 25.8 4.3 58 102-166 90-149 (149)
153 COG1366 SpoIIAA Anti-anti-sigm 28.2 2.4E+02 0.0052 22.0 6.3 78 105-191 16-96 (117)
154 TIGR00161 conserved hypothetic 27.9 2E+02 0.0044 25.9 6.6 135 92-235 67-221 (238)
155 TIGR00377 ant_ant_sig anti-ant 27.1 2.7E+02 0.0058 20.8 6.7 75 105-191 15-95 (108)
156 cd01825 SGNH_hydrolase_peri1 S 24.9 1.4E+02 0.0031 24.2 4.7 17 164-180 51-67 (189)
157 TIGR02675 tape_meas_nterm tape 23.8 1.6E+02 0.0035 21.9 4.3 34 224-257 33-70 (75)
158 TIGR00696 wecB_tagA_cpsF bacte 22.8 3.8E+02 0.0081 23.2 7.0 75 94-183 34-114 (177)
159 cd01836 FeeA_FeeB_like SGNH_hy 22.5 3E+02 0.0064 22.6 6.2 65 104-179 4-77 (191)
160 cd06533 Glyco_transf_WecG_TagA 22.3 4.8E+02 0.01 22.0 7.5 76 94-183 32-113 (171)
161 cd01830 XynE_like SGNH_hydrola 21.6 3.2E+02 0.0069 23.1 6.3 66 105-180 2-85 (204)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-59 Score=419.40 Aligned_cols=157 Identities=48% Similarity=0.768 Sum_probs=153.8
Q ss_pred CCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCC
Q 025131 91 QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP 170 (257)
Q Consensus 91 ~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~ 170 (257)
++|+||||+||++||||||++||++++++|++|||||+++|++|||+||||||| |++++|+||||+|+++++
T Consensus 80 ~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG--------G~vtaglAIYDtMq~ik~ 151 (275)
T KOG0840|consen 80 ERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKP 151 (275)
T ss_pred CCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC--------CccchhhhHHHHHHhhCC
Confidence 789999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHH
Q 025131 171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVS 249 (257)
Q Consensus 171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~ 249 (257)
+|.|+|+|+|||||+|||++|+||+|+++||+++|||||.++++||+.||.++|+|+.+.|+.+. +|+++||+|.|+|+
T Consensus 152 ~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~ 231 (275)
T KOG0840|consen 152 DVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIE 231 (275)
T ss_pred CceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999988
Q ss_pred -HHHhhc
Q 025131 250 -DLKKAQ 255 (257)
Q Consensus 250 -~l~r~~ 255 (257)
+|.|+.
T Consensus 232 ~d~dRd~ 238 (275)
T KOG0840|consen 232 KDMDRDR 238 (275)
T ss_pred hhhcccc
Confidence 777754
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-55 Score=386.46 Aligned_cols=167 Identities=41% Similarity=0.683 Sum_probs=159.6
Q ss_pred eeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccH
Q 025131 76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE 155 (257)
Q Consensus 76 ~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v 155 (257)
++|+++|. ++.+++++|||++|+++|||||+++|++.+++.+++||++|+.+++.|+|+||||||| |+|
T Consensus 3 ~~~~~~e~---~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG--------G~V 71 (200)
T COG0740 3 LVPMVIEQ---TSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GSV 71 (200)
T ss_pred CCccccCc---ccCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC--------ccc
Confidence 45666654 5677889999999999999999999999999999999999999999999999999999 999
Q ss_pred hhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH
Q 025131 156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV 235 (257)
Q Consensus 156 ~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~ 235 (257)
++|+||||+||+++++|+|+|+|+|||||++|++||+||||+++|||++|||||+++++|||+|++++|+|++++++.+.
T Consensus 72 ~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~ 151 (200)
T COG0740 72 TAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLN 151 (200)
T ss_pred chhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHhcCCCHHHHHHHHh
Q 025131 236 -LYTEKSPEDHGVVSDLKK 253 (257)
Q Consensus 236 -iY~erTg~~~evI~~l~r 253 (257)
+|+++||++.|+++.+++
T Consensus 152 ~i~a~~TGq~~e~i~~d~d 170 (200)
T COG0740 152 RIYAEHTGQTLEKIEKDTD 170 (200)
T ss_pred HHHHHHcCCCHHHHHHhhc
Confidence 999999999999996665
No 3
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=1.3e-54 Score=387.00 Aligned_cols=178 Identities=46% Similarity=0.823 Sum_probs=166.3
Q ss_pred eeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChh----------HHHHHHHHHHhchhcCCCCceEEEEcCCCCC-
Q 025131 78 TMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTT- 146 (257)
Q Consensus 78 ~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~----------~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~- 146 (257)
.+.+|+......+.+|+||+++||++|||||+++|+++ ++++|++|||||+.+|+++||+|||||||++
T Consensus 5 ~~~~~~~~~~~~~~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv 84 (222)
T PRK12552 5 AVQAPYYGDAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSW 84 (222)
T ss_pred cccccccCCCCCCCCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCc
Confidence 34566654455567899999999999999999999999 9999999999999999999999999999988
Q ss_pred CCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHH
Q 025131 147 KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKE 226 (257)
Q Consensus 147 ~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~e 226 (257)
.+|+.+|++++|+||||+|++++++|+|+|+|+|||||++||+||+||+|+++|||++|||||+++++||++|++++++|
T Consensus 85 ~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~e 164 (222)
T PRK12552 85 YTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKE 164 (222)
T ss_pred cccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHhcCCCHHHHHHHHhhc
Q 025131 227 MKNVKAELV-LYTEKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 227 l~~~k~~l~-iY~erTg~~~evI~~l~r~~ 255 (257)
|+++++.+. +|+++||++.|+|+++++.+
T Consensus 165 l~~~r~~l~~iya~~TG~~~e~I~~d~~rd 194 (222)
T PRK12552 165 VLHNKRTMLEILSRNTGQTVEKLSKDTDRM 194 (222)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHhcCC
Confidence 999999999 99999999999999766543
No 4
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=2.1e-52 Score=368.11 Aligned_cols=168 Identities=35% Similarity=0.544 Sum_probs=158.2
Q ss_pred eeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHh
Q 025131 77 ITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET 156 (257)
Q Consensus 77 ~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~ 156 (257)
+|+++|. +..++.|.|||++||++|||||+++|++++|++|++||+||+.+|++++|+||||||| |+|+
T Consensus 4 ~p~~~~~---~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG--------G~v~ 72 (201)
T PRK14513 4 IPYVIEQ---TGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG--------GEVY 72 (201)
T ss_pred CCccccc---CCCCccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------Cchh
Confidence 4555543 4556788999999999999999999999999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-
Q 025131 157 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV- 235 (257)
Q Consensus 157 aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~- 235 (257)
+|++|||+|++++++|+|+|+|+|||||++||+||+||+|+++|||++|||||+++++|+++|++++++|++++++.+.
T Consensus 73 ~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~ 152 (201)
T PRK14513 73 AGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVD 152 (201)
T ss_pred hHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHhhc
Q 025131 236 LYTEKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 236 iY~erTg~~~evI~~l~r~~ 255 (257)
+|+++||++.++|+++++.+
T Consensus 153 iya~~Tg~~~~~I~~~~~rd 172 (201)
T PRK14513 153 IYHRHTDLPHEKLLRDMERD 172 (201)
T ss_pred HHHHHHCcCHHHHHHHhccC
Confidence 99999999999999776643
No 5
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=9.3e-52 Score=368.61 Aligned_cols=169 Identities=34% Similarity=0.532 Sum_probs=159.3
Q ss_pred eeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccH
Q 025131 76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE 155 (257)
Q Consensus 76 ~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v 155 (257)
++|++++. +..+++++|||++||++|||||+++||+.+++++++||+||+.+++++||+||||||| |+|
T Consensus 30 ~~p~~~~~---~~~~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG--------Gsv 98 (221)
T PRK14514 30 LNPYILEE---RQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG--------GSV 98 (221)
T ss_pred ccceeeee---CCCCCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC--------cch
Confidence 55666543 4456789999999999999999999999999999999999999999999999999999 999
Q ss_pred hhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH
Q 025131 156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV 235 (257)
Q Consensus 156 ~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~ 235 (257)
++|++|||+|++++++|+|+|+|+|||||++||++|++|+|+++|||++|||||+++.+||++|++++++|++++++.+.
T Consensus 99 ~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~ 178 (221)
T PRK14514 99 YAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELY 178 (221)
T ss_pred hhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHhcCCCHHHHHHHHhhc
Q 025131 236 -LYTEKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 236 -iY~erTg~~~evI~~l~r~~ 255 (257)
+|+++||++.++|+++++.+
T Consensus 179 ~iya~~TG~~~e~I~~~~~rd 199 (221)
T PRK14514 179 TIIADHSGTPFDKVWADSDRD 199 (221)
T ss_pred HHHHHHHCcCHHHHHHHhhcC
Confidence 99999999999999776643
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=2.7e-51 Score=360.47 Aligned_cols=167 Identities=31% Similarity=0.568 Sum_probs=157.6
Q ss_pred eecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHH
Q 025131 81 IPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA 160 (257)
Q Consensus 81 ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlA 160 (257)
+|+......+.+|.|++++||++|||||+++||+++++++++||+||+.+|+.++|+||||||| |+|++|++
T Consensus 8 ~~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG--------G~v~~g~a 79 (200)
T CHL00028 8 VPFRLPGEEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG--------GSVISGLA 79 (200)
T ss_pred eeeecCCCCCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC--------cchhhHHH
Confidence 3443345566789999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc-cccCHHHHHHHHHHHHHHHHHHH-HHH
Q 025131 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR-IEGQATDVEIARKEMKNVKAELV-LYT 238 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~-~~GqAsDi~i~a~el~~~k~~l~-iY~ 238 (257)
|||+|++++++|+|+|+|+|+|||++||++|+||+|+++|||++|||||+++ .+||++|++++++|++++++.+. +|+
T Consensus 80 Iyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya 159 (200)
T CHL00028 80 IYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYA 159 (200)
T ss_pred HHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 89999999999999999999988 999
Q ss_pred HhcCCCHHHHHHHHhhc
Q 025131 239 EKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 239 erTg~~~evI~~l~r~~ 255 (257)
++||++.++|+++++.+
T Consensus 160 ~~Tg~~~e~i~~~~~r~ 176 (200)
T CHL00028 160 QRTGKPLWVISEDMERD 176 (200)
T ss_pred HHHCcCHHHHHHHhhcC
Confidence 99999999999777654
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.6e-50 Score=354.67 Aligned_cols=161 Identities=38% Similarity=0.590 Sum_probs=154.2
Q ss_pred CCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHh
Q 025131 87 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG 166 (257)
Q Consensus 87 ~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~ 166 (257)
...++.+.|||++||++|||||+++||++++++++++|+||+.+|++++|+||||||| |+|++|++|||+|+
T Consensus 9 ~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG--------G~v~~g~aIyd~m~ 80 (196)
T PRK12551 9 SGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG--------GSVYDGLGIFDTMQ 80 (196)
T ss_pred CCCCccccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC--------cchhhHHHHHHHHH
Confidence 3344578999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCH
Q 025131 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDH 245 (257)
Q Consensus 167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~ 245 (257)
+++++|+|+|+|+|||||++||++|++|+|+++|||++|||||+++.+||++|++++++|++++++.+. +|+++||++.
T Consensus 81 ~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~ 160 (196)
T PRK12551 81 HVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPL 160 (196)
T ss_pred hcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHhhc
Q 025131 246 GVVSDLKKAQ 255 (257)
Q Consensus 246 evI~~l~r~~ 255 (257)
++|+++++.+
T Consensus 161 ~~i~~~~~rd 170 (196)
T PRK12551 161 ERIQEDTDRD 170 (196)
T ss_pred HHHHHHhhcC
Confidence 9999777654
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=2.5e-46 Score=325.98 Aligned_cols=162 Identities=41% Similarity=0.653 Sum_probs=155.1
Q ss_pred CCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHh
Q 025131 87 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG 166 (257)
Q Consensus 87 ~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~ 166 (257)
+..++.|+||+++||++|||||+|+|++++++++++||++|+.+++.++|+||||||| |++++|++|||+|+
T Consensus 10 ~~~~~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG--------G~v~~g~~I~d~l~ 81 (191)
T TIGR00493 10 TGRGERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG--------GSITAGLAIYDTMQ 81 (191)
T ss_pred CCCCcccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CCHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCH
Q 025131 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDH 245 (257)
Q Consensus 167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~ 245 (257)
+++++|+|+|+|+|+|||++|+++|++++|+++|||++|||||+++.+|++.|+++++++++++++.+. +|+++||++.
T Consensus 82 ~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~ 161 (191)
T TIGR00493 82 FIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSL 161 (191)
T ss_pred hcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHhhcC
Q 025131 246 GVVSDLKKAQL 256 (257)
Q Consensus 246 evI~~l~r~~~ 256 (257)
++++++++.++
T Consensus 162 ~~i~~~~~~~~ 172 (191)
T TIGR00493 162 EQIEKDTERDF 172 (191)
T ss_pred HHHHHHhhCCc
Confidence 99998877553
No 9
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=4.1e-44 Score=313.85 Aligned_cols=162 Identities=42% Similarity=0.672 Sum_probs=155.1
Q ss_pred CCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHH
Q 025131 86 GTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVM 165 (257)
Q Consensus 86 ~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m 165 (257)
.+..++.|+||+++||++|||||+|+|++++++.++++|++|+.+++.++|+||||||| |++++|++|||+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG--------G~v~~g~~I~d~i 85 (200)
T PRK00277 14 QTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GSVTAGLAIYDTM 85 (200)
T ss_pred cCCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CcHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCC
Q 025131 166 GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPED 244 (257)
Q Consensus 166 ~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~ 244 (257)
++++++|+|+|.|.|+|+|++|+++|++++|+++|||++|||||+++.+|++.|+++++++++++++.+. +|+++||++
T Consensus 86 ~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~ 165 (200)
T PRK00277 86 QFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQP 165 (200)
T ss_pred HhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHhhc
Q 025131 245 HGVVSDLKKAQ 255 (257)
Q Consensus 245 ~evI~~l~r~~ 255 (257)
.++++++++.+
T Consensus 166 ~~~i~~~~~~~ 176 (200)
T PRK00277 166 LEKIEKDTDRD 176 (200)
T ss_pred HHHHHHHhhCC
Confidence 99999776644
No 10
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1e-43 Score=311.45 Aligned_cols=160 Identities=29% Similarity=0.484 Sum_probs=152.8
Q ss_pred CCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhcc
Q 025131 89 WEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV 168 (257)
Q Consensus 89 ~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i 168 (257)
....+.|++++||++|+|||+|+|++.+++.|+++|++|+.+++.++|+||||||| |+|++|++|||+|+++
T Consensus 9 ~~~~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v~ag~aI~d~i~~~ 80 (197)
T PRK14512 9 KQTGIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG--------GDIDAGFAIFNMIRFV 80 (197)
T ss_pred ccCCcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CCHHHHHHHHHHHHhC
Confidence 34467899999999999999999999999999999999998888999999999999 9999999999999999
Q ss_pred CCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHH
Q 025131 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGV 247 (257)
Q Consensus 169 ~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~ev 247 (257)
+++|+|+|.|+|+|||++|+++|++++|+++|||++|||||+++++|+++|+++++++++++++.+. +|+++||++.++
T Consensus 81 ~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~ 160 (197)
T PRK14512 81 KPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDK 160 (197)
T ss_pred CCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhcC
Q 025131 248 VSDLKKAQL 256 (257)
Q Consensus 248 I~~l~r~~~ 256 (257)
++.+++.++
T Consensus 161 i~~~~~~d~ 169 (197)
T PRK14512 161 VEKDTDRDF 169 (197)
T ss_pred HHHhhhcCc
Confidence 998876543
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3.6e-42 Score=303.14 Aligned_cols=170 Identities=32% Similarity=0.542 Sum_probs=156.4
Q ss_pred eeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccH
Q 025131 76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE 155 (257)
Q Consensus 76 ~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v 155 (257)
++|.+++. ...+..+.||+++||++|+|||+|+|++.+++.++++|++|+.+++.++|+||||||| |++
T Consensus 11 ~~p~~~~~---~~~~~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v 79 (207)
T PRK12553 11 ILPSFIER---TSYGVKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG--------GSV 79 (207)
T ss_pred CCCccccc---CCCCCccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC--------CcH
Confidence 45544432 3344567999999999999999999999999999999999999988999999999999 999
Q ss_pred hhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC--cccccCHHHHHHHHHHHHHHHHH
Q 025131 156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRIEGQATDVEIARKEMKNVKAE 233 (257)
Q Consensus 156 ~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~--~~~~GqAsDi~i~a~el~~~k~~ 233 (257)
++|++|||+|++++++|+|+|.|.|+|+|++|++||++|+|+++|||+||||||+ ++.+|++.|++++++|++++++.
T Consensus 80 ~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~ 159 (207)
T PRK12553 80 TAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRER 159 (207)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 67899999999999999999999
Q ss_pred HH-HHHHhcCCCHHHHHHHHhhcC
Q 025131 234 LV-LYTEKSPEDHGVVSDLKKAQL 256 (257)
Q Consensus 234 l~-iY~erTg~~~evI~~l~r~~~ 256 (257)
+. +|+++||++.++++.+++.+.
T Consensus 160 ~~~~ya~~tg~~~e~i~~~~~~~~ 183 (207)
T PRK12553 160 LERILAEHTGQSVEKIRKDTDRDK 183 (207)
T ss_pred HHHHHHHHhCCCHHHHHHHHhcCc
Confidence 97 999999999999998776543
No 12
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=1.4e-41 Score=290.19 Aligned_cols=158 Identities=32% Similarity=0.511 Sum_probs=148.4
Q ss_pred CCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC
Q 025131 90 EQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK 169 (257)
Q Consensus 90 ~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~ 169 (257)
++.|+|||++|+++|+|||+++||+++++.++++|++|+.+++.++|+||||||| |+|++|++|||+|++++
T Consensus 3 ~~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG--------G~v~~g~~i~~~i~~~~ 74 (182)
T PF00574_consen 3 GEEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPG--------GDVDAGLAIYDAIRSSK 74 (182)
T ss_dssp EEEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE--------BCHHHHHHHHHHHHHSS
T ss_pred CcEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC--------CccHHHHHHHHHHHhcC
Confidence 4579999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHH
Q 025131 170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVV 248 (257)
Q Consensus 170 ~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI 248 (257)
.+|+|+|.|.|+|+|++|+++|++++|++.|||+||+|||+.+..|++.|++++++++++.++.+. +|+++||++.+.+
T Consensus 75 ~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i 154 (182)
T PF00574_consen 75 APVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEI 154 (182)
T ss_dssp SEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHH
T ss_pred CCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988 9999999999999
Q ss_pred HHHHhhc
Q 025131 249 SDLKKAQ 255 (257)
Q Consensus 249 ~~l~r~~ 255 (257)
+++++.+
T Consensus 155 ~~~~~~~ 161 (182)
T PF00574_consen 155 EELMDRD 161 (182)
T ss_dssp HHHCSST
T ss_pred HHHHhCC
Confidence 9877643
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=6.4e-40 Score=279.68 Aligned_cols=153 Identities=46% Similarity=0.740 Sum_probs=148.2
Q ss_pred chHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEE
Q 025131 95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFT 174 (257)
Q Consensus 95 Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~T 174 (257)
||+++||++|+|||+|+|+++++++++++|++++.+++.++|+||||||| |++++|++|||.|++++.+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG--------G~v~~~~~i~~~l~~~~~~v~t 72 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKPPVST 72 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEE
Confidence 79999999999999999999999999999999999888899999999999 9999999999999999999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHh
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKK 253 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r 253 (257)
+|.|+|+|+|++|+++|++|+|++.|||++|+|+|+++..|++.|++.+++++.++++.+. +|+++||++.+++.++++
T Consensus 73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999988 999999999999998885
Q ss_pred hc
Q 025131 254 AQ 255 (257)
Q Consensus 254 ~~ 255 (257)
.+
T Consensus 153 ~~ 154 (171)
T cd07017 153 RD 154 (171)
T ss_pred CC
Confidence 44
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=1.2e-37 Score=264.46 Aligned_cols=144 Identities=33% Similarity=0.461 Sum_probs=139.7
Q ss_pred cEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhH
Q 025131 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGE 183 (257)
Q Consensus 104 RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~ 183 (257)
|+|||+|+|++.+++.++++|++|+.+++.++|+||||||| |++++|++|||+|++++.+|+|+|.|+|+|+
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG--------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~ 72 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPG--------GDVFAGMAIYDTIKFIKADVVTIIDGLAASM 72 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC--------CcHHHHHHHHHHHHhcCCCceEEEEeehhhH
Confidence 89999999999999999999999999888999999999999 9999999999999999999999999999999
Q ss_pred HHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHhhc
Q 025131 184 AALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 184 AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r~~ 255 (257)
|++|+++|++|+|+++||+++|||||+++..|++.|++++++++++.++.+. +|+++||++.++|+++++.+
T Consensus 73 ~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 145 (162)
T cd07013 73 GSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERD 145 (162)
T ss_pred HHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999876654
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.94 E-value=2e-25 Score=186.97 Aligned_cols=138 Identities=22% Similarity=0.266 Sum_probs=129.4
Q ss_pred EEEeCcccCh---hHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeeh
Q 025131 105 IVYLGMSFVP---SVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAW 181 (257)
Q Consensus 105 IIfLgg~I~~---~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~Aa 181 (257)
-|||+|+|++ ..++.+.+.|.+++.+ ++|.||||||| |++++|++|||.|+.++.||.|++.|.|+
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspG--------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPG--------GDVFAGLAIYNALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEEEEcchHH
Confidence 5899999999 7999999999888653 89999999999 99999999999999999999999999999
Q ss_pred hHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHhhc
Q 025131 182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 182 S~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r~~ 255 (257)
|+|++|+++|+ +|++.|+++||+|+|+++..|+..|+++..++++++++.+. .|.+++|++.+.++.++..+
T Consensus 71 s~g~~ia~a~d--~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~ 143 (160)
T cd07016 71 SAASVIAMAGD--EVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAE 143 (160)
T ss_pred hHHHHHHhcCC--eEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence 99999999996 69999999999999999999999999999999999999988 99999999988888777654
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.87 E-value=2.2e-21 Score=167.52 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=118.6
Q ss_pred EEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEe---eeeh
Q 025131 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW 181 (257)
Q Consensus 105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~---G~Aa 181 (257)
.|-+.|.|++..+..+...|-.-. +++.+.|.|+||||| |.++++.+|||+|++++.||.|+|. |+|+
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPG--------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~Aa 73 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPG--------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAA 73 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCC--------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeeh
Confidence 467789999888777777665443 466899999999999 9999999999999999999999999 9999
Q ss_pred hHHHHHHccCCCCCeeecCCcEEeeecCCcccccC-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 025131 182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQ-----ATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 182 S~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~Gq-----AsDi~i~a~el~~~k~~l~iY~erTg~~~evI~~l~r~~ 255 (257)
|+|++|+++|+ +|+|.|+++++.|+|..+ .|+ +.|.+++++++.++|+ |++++|++.++++.+.++.
T Consensus 74 Sag~~I~~a~~--~i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~----~A~~~Gr~~~~a~~~v~~~ 145 (172)
T cd07015 74 SAGTYIALGSH--LIAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS----LAQESGRNATIAEEFITKD 145 (172)
T ss_pred hHHHHHHHhcC--ceEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH----HHHHHCcCHHHHHHHHHhh
Confidence 99999999996 499999999999999865 366 7788999999998888 9999999999999776654
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.86 E-value=4.7e-21 Score=159.76 Aligned_cols=140 Identities=16% Similarity=0.267 Sum_probs=128.2
Q ss_pred EEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHH
Q 025131 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184 (257)
Q Consensus 105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~A 184 (257)
+|||.|+|++.+...+++.|..++.+++.+.|.|++|||| |++.++..|++.|+..+.||.+++.|.|+|+|
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~G--------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g 72 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPG--------GRVDAGMNIVDALQASRKPVIAYVGGQAASAG 72 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCC--------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHH
Confidence 5899999999999999999999998877899999999999 99999999999999999999999999999999
Q ss_pred HHHHccCCCCCeeecCCcEEeeecCCcccccC--HHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHhh
Q 025131 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQ--ATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKKA 254 (257)
Q Consensus 185 slIlaaG~kgkR~alPnS~iMIHqP~~~~~Gq--AsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r~ 254 (257)
.+|+++|+ +|++.|++++++|+|+.+..|. ..+.+...+.++.+.+.+. .+++++|.+.+++.+++..
T Consensus 73 ~~la~~~d--~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~ 143 (161)
T cd00394 73 YYIATAAN--KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEK 143 (161)
T ss_pred HHHHhCCC--EEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcC
Confidence 99999995 7999999999999999876664 4788888889999999988 9999999999877766543
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.79 E-value=3.6e-18 Score=147.59 Aligned_cols=137 Identities=12% Similarity=0.146 Sum_probs=118.8
Q ss_pred EEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEe---eeeh
Q 025131 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW 181 (257)
Q Consensus 105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~---G~Aa 181 (257)
+|.|.|+|++..++.+..+|..++. ++.+.|.|+||||| |+++++..||+.|+.++.||.+.|. |.|+
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~-~~~~~vvl~InSpG--------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~Aa 73 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEE-GGADALIIELDTPG--------GLLDSTREIVQAILASPVPVVVYVYPSGARAA 73 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHh-CCCCEEEEEEECCC--------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCch
Confidence 5788999999999999999999885 44789999999999 9999999999999999999999998 9999
Q ss_pred hHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 025131 182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLK 252 (257)
Q Consensus 182 S~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~iY~erTg~~~evI~~l~ 252 (257)
|+|++|+++|+ +|++.|+++|++|+|..+..+...+...+.+.+..+...+..|.+++|++.+.++.|+
T Consensus 74 sgG~~iala~D--~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l 142 (187)
T cd07020 74 SAGTYILLAAH--IAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAV 142 (187)
T ss_pred hHHHHHHHhCC--ceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999995 6999999999999998554444445566677788887776699999999877776543
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.70 E-value=4.2e-16 Score=134.95 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=114.3
Q ss_pred EEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHH
Q 025131 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184 (257)
Q Consensus 105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~A 184 (257)
.|.+.|+|++..+..+...|-.... ++.+.|.|+||||| |.++++..||+.|+..+.||.+++.|.|+|+|
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~-~~~~~ivl~inspG--------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG 73 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKE-EGADAVVLDIDTPG--------GRVDSALEIVDLILNSPIPTIAYVNDRAASAG 73 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHh-CCCCeEEEEEECcC--------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHH
Confidence 4678899999888877777755544 34789999999999 99999999999999999999999999999999
Q ss_pred HHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 025131 185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 185 slIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~iY~erTg~~~evI~~l~r~~ 255 (257)
++|++++ ++++|.|++.++.|+|.....+++.| -|....++..+.-|++++|.+.+.++.|.+++
T Consensus 74 ~~ia~a~--d~i~m~p~a~iG~~~~v~~~~~~~~~----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~ 138 (178)
T cd07021 74 ALIALAA--DEIYMAPGATIGAAEPIPGDGNGAAD----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKD 138 (178)
T ss_pred HHHHHhC--CeEEECCCCeEecCeeEcCCCccchh----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhh
Confidence 9999999 46999999999999999765554322 23344455555589999999999999999876
No 20
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.20 E-value=2.7e-10 Score=99.51 Aligned_cols=141 Identities=14% Similarity=0.156 Sum_probs=111.9
Q ss_pred EEEeCcccC---hhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC---CCEEEEEee
Q 025131 105 IVYLGMSFV---PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVG 178 (257)
Q Consensus 105 IIfLgg~I~---~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~---~~V~Tv~~G 178 (257)
+|++.|+|+ +.+...+..+|..+..++..+-|.|++||+| |++..+..|++.++.++ .||.+++.|
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~G--------g~~~~~~~i~~~i~~~~~~~kpvia~v~g 75 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPG--------GSVVASEEIYREIRRLRKAKKPVVASMGD 75 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCC--------CCHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 688999998 7899999999999987777899999999999 99999999999987654 599999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCcEE------eee------------cCCccccc------------CHHHHHHHHHHHH
Q 025131 179 NAWGEAALLLGAGAKGNRAALPSSTI------MIK------------QPIGRIEG------------QATDVEIARKEMK 228 (257)
Q Consensus 179 ~AaS~AslIlaaG~kgkR~alPnS~i------MIH------------qP~~~~~G------------qAsDi~i~a~el~ 228 (257)
.|+|.|..|+++++ +|++.|++.+ |.| ++.....| ..++-+..-+.++
T Consensus 76 ~~~s~g~~lA~aaD--~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~ 153 (208)
T cd07023 76 VAASGGYYIAAAAD--KIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVD 153 (208)
T ss_pred cchhHHHHHHhhCC--EEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999995 6999999988 444 22211112 2234555555666
Q ss_pred HHHHHHH-HHHHhcCCCHHHHHHHHhhc
Q 025131 229 NVKAELV-LYTEKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 229 ~~k~~l~-iY~erTg~~~evI~~l~r~~ 255 (257)
.+.+.+. ..++.-|.+.+.+.++.+.+
T Consensus 154 ~~~~~f~~~Va~~R~~~~~~~~~~~~~~ 181 (208)
T cd07023 154 DIYDQFVDVVAEGRGMSGERLDKLADGR 181 (208)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHhcCCc
Confidence 6667666 77888889998888876654
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.11 E-value=2.8e-09 Score=93.53 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=105.8
Q ss_pred EEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC--CCEEEEEeeeehh
Q 025131 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWG 182 (257)
Q Consensus 105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~--~~V~Tv~~G~AaS 182 (257)
+|.|.|+|+ .....+...|..+..++..+.|.|++||+| |++..+..|++.|+.++ .||.+++.|.|+|
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~G--------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s 74 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPG--------GTVVASEEIYEKLKKLKAKKPVVASMGGVAAS 74 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCC--------CCHHHHHHHHHHHHHhcCCCCEEEEECCccch
Confidence 678888997 456778888877776667789999999999 99999999999999998 8999999999999
Q ss_pred HHHHHHccCCCCCeeecCCcEE------eeecCCcc------------ccc------------CHHHHHHHHHHHHHHHH
Q 025131 183 EAALLLGAGAKGNRAALPSSTI------MIKQPIGR------------IEG------------QATDVEIARKEMKNVKA 232 (257)
Q Consensus 183 ~AslIlaaG~kgkR~alPnS~i------MIHqP~~~------------~~G------------qAsDi~i~a~el~~~k~ 232 (257)
.|..|+++++ +|++.|++.+ |-|+.... ..| ...+-+..-+.++.+.+
T Consensus 75 ~g~~la~aaD--~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~ 152 (207)
T TIGR00706 75 GGYYIAMAAD--EIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYE 152 (207)
T ss_pred HHHHHHhcCC--EEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999994 6999999875 33332111 011 12233333345555666
Q ss_pred HHH-HHHHhcCCCHHHHHHHHhhc
Q 025131 233 ELV-LYTEKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 233 ~l~-iY~erTg~~~evI~~l~r~~ 255 (257)
.+. ..++.-|.+.+.++++.+.+
T Consensus 153 ~f~~~va~~R~~~~~~~~~~~~~~ 176 (207)
T TIGR00706 153 QFVQVVAKGRNLPVEDVKKFADGR 176 (207)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCC
Confidence 655 66666689998888887654
No 22
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.93 E-value=2.4e-08 Score=85.28 Aligned_cols=122 Identities=17% Similarity=0.104 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhc---cCCCEEEEEeeeehhHHHHHHccCC
Q 025131 116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFTLCVGNAWGEAALLLGAGA 192 (257)
Q Consensus 116 ~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~---i~~~V~Tv~~G~AaS~AslIlaaG~ 192 (257)
+.+.+...|..++.++..+-|.|.+||+| |++.....+++.++. .+.||.+++.|.|+|.|..|+++++
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~g--------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D 94 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN 94 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC
Confidence 46778888888877666788999999999 988887777776654 4679999999999999999999995
Q ss_pred CCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHhh
Q 025131 193 KGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKKA 254 (257)
Q Consensus 193 kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r~ 254 (257)
.|++.|++.|++|.++.+ .+..-..+..+.+.+. .+++..|.+.+.+.+++.+
T Consensus 95 --~i~a~~~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~ 148 (177)
T cd07014 95 --YIVANPSTLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQ 148 (177)
T ss_pred --EEEECCCCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcC
Confidence 699999999999966554 1112235666666666 8899999999888877643
No 23
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.87 E-value=4.9e-08 Score=98.32 Aligned_cols=141 Identities=15% Similarity=0.097 Sum_probs=109.3
Q ss_pred EEEeCcccChh-------HHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC---CCEEE
Q 025131 105 IVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFT 174 (257)
Q Consensus 105 IIfLgg~I~~~-------~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~---~~V~T 174 (257)
+|++.|+|.+. ..+.+..+|..+..++..+.|.|+||||| |+++++-.|++.|+..+ .||.+
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpG--------Gs~~ase~i~~~i~~~~~~gKPVva 383 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPG--------GSVFASEIIRRELARAQARGKPVIV 383 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCC--------CCHHHHHHHHHHHHHHHhCCCcEEE
Confidence 89999999742 24566666666665556799999999999 99999999999997553 68999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEE------eeecCC----------------------ccc-ccCHHHHHHHHH
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTI------MIKQPI----------------------GRI-EGQATDVEIARK 225 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~i------MIHqP~----------------------~~~-~GqAsDi~i~a~ 225 (257)
.+.|+|+|.|-.|.++++ ++++.|++.+ +.+... ... .....+.++..+
T Consensus 384 ~~~g~aaSggY~iA~aaD--~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~ 461 (584)
T TIGR00705 384 SMGAMAASGGYWIASAAD--YIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQL 461 (584)
T ss_pred EECCccccHHHHHHHhCC--EEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHH
Confidence 999999999999999995 6999999987 555211 001 124667777777
Q ss_pred HHHHHHHHHH-HHHHhcCCCHHHHHHHHhhc
Q 025131 226 EMKNVKAELV-LYTEKSPEDHGVVSDLKKAQ 255 (257)
Q Consensus 226 el~~~k~~l~-iY~erTg~~~evI~~l~r~~ 255 (257)
.+++..+.+. ..++.-|++.+.++.+...+
T Consensus 462 ~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Gr 492 (584)
T TIGR00705 462 SVEAGYRRFLSVVSAGRNLTPTQVDKVAQGR 492 (584)
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHhCC
Confidence 8888888877 77777889999888876644
No 24
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.85 E-value=1e-07 Score=84.00 Aligned_cols=129 Identities=18% Similarity=0.163 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC--CCEEEEEeeeehhHHHHHHccC
Q 025131 114 PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWGEAALLLGAG 191 (257)
Q Consensus 114 ~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~--~~V~Tv~~G~AaS~AslIlaaG 191 (257)
......+++.|..++.++..+-|.|.+||+| |++.....|++.|+.++ .||.+++.|.|+|.|..|++++
T Consensus 24 ~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~g--------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~a 95 (214)
T cd07022 24 LTSYEGIAAAIRAALADPDVRAIVLDIDSPG--------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAA 95 (214)
T ss_pred cccHHHHHHHHHHHhhCCCCcEEEEEEeCCC--------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcC
Confidence 3567788999988887777889999999999 99999999999999887 8999999999999999999999
Q ss_pred CCCCeeecCCcEE------eeecCCccc------------cc------------CHHHHHHHHHHHHHHHHHHH-HHHHh
Q 025131 192 AKGNRAALPSSTI------MIKQPIGRI------------EG------------QATDVEIARKEMKNVKAELV-LYTEK 240 (257)
Q Consensus 192 ~kgkR~alPnS~i------MIHqP~~~~------------~G------------qAsDi~i~a~el~~~k~~l~-iY~er 240 (257)
+ ++++.|++.+ +.|....+. .| +..+-+..-+.++.+.+.+. .+++.
T Consensus 96 D--~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~ 173 (214)
T cd07022 96 D--RIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARN 173 (214)
T ss_pred C--EEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 7999999985 333332111 11 22344444455666666666 88888
Q ss_pred cCCCHHHHHHHH
Q 025131 241 SPEDHGVVSDLK 252 (257)
Q Consensus 241 Tg~~~evI~~l~ 252 (257)
.|++.+++.++.
T Consensus 174 R~~~~~~~~~~~ 185 (214)
T cd07022 174 RGLSAAAVRATE 185 (214)
T ss_pred CCCCHHHHHHhh
Confidence 899988888764
No 25
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.74 E-value=2.7e-08 Score=93.22 Aligned_cols=79 Identities=20% Similarity=0.101 Sum_probs=67.7
Q ss_pred HHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCC--EEEEEeeeehhHHHHHHccCCCC
Q 025131 117 TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP--IFTLCVGNAWGEAALLLGAGAKG 194 (257)
Q Consensus 117 a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~--V~Tv~~G~AaS~AslIlaaG~kg 194 (257)
...+.+.|-.+...++.+.|-|.||||| |++.+..-||+.++.++.+ |+.++-++|||.|-+|.|+++
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~inSPG--------G~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd-- 151 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRINSPG--------GSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAAD-- 151 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEECcC--------CchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCC--
Confidence 3445555555666677899999999999 9999999999999999874 999999999999999999995
Q ss_pred CeeecCCcEEe
Q 025131 195 NRAALPSSTIM 205 (257)
Q Consensus 195 kR~alPnS~iM 205 (257)
+.+|-|+|.+-
T Consensus 152 ~I~a~p~si~G 162 (317)
T COG0616 152 KIVADPSSITG 162 (317)
T ss_pred EEEecCCceee
Confidence 68999998753
No 26
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.71 E-value=4e-07 Score=80.20 Aligned_cols=127 Identities=15% Similarity=0.137 Sum_probs=94.4
Q ss_pred HHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhc---cCCCEEEEEeeeehhHHHHHHccCCC
Q 025131 117 TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFTLCVGNAWGEAALLLGAGAK 193 (257)
Q Consensus 117 a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~---i~~~V~Tv~~G~AaS~AslIlaaG~k 193 (257)
...+...|..+..++..+-|.|.+||+| |++.+...+++.|+. .+.||.+++.|.|+|.|..|++++
T Consensus 23 ~~~l~~~l~~a~~d~~v~~ivL~~~s~G--------g~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~a-- 92 (211)
T cd07019 23 GDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPA-- 92 (211)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEEcCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhC--
Confidence 4678888888877667799999999999 999998889887654 556999999999999999999999
Q ss_pred CCeeecCCcEEee------------------------ec-CCcccc-c---CHHHHHHHHHHHHHHHHHHH-HHHHhcCC
Q 025131 194 GNRAALPSSTIMI------------------------KQ-PIGRIE-G---QATDVEIARKEMKNVKAELV-LYTEKSPE 243 (257)
Q Consensus 194 gkR~alPnS~iMI------------------------Hq-P~~~~~-G---qAsDi~i~a~el~~~k~~l~-iY~erTg~ 243 (257)
+++++.|++++.. |. +..... . .+++-+.....++++.+.+. ..++..++
T Consensus 93 D~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~ 172 (211)
T cd07019 93 NYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITLVADARHS 172 (211)
T ss_pred CEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4699999988842 21 110000 0 12233333356677777766 78888899
Q ss_pred CHHHHHHHHh
Q 025131 244 DHGVVSDLKK 253 (257)
Q Consensus 244 ~~evI~~l~r 253 (257)
+.+.++.+.+
T Consensus 173 ~~~~l~~~~~ 182 (211)
T cd07019 173 TPEQIDKIAQ 182 (211)
T ss_pred CHHHHHHhcC
Confidence 9888877654
No 27
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.50 E-value=1.1e-06 Score=81.54 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=75.5
Q ss_pred CcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHHHH
Q 025131 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 188 (257)
Q Consensus 109 gg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIl 188 (257)
...|+.+.++.+...+-. .++.++|.|.||+|| |.+.++..|.+.|+.++.+++.++-..|.|+|++|+
T Consensus 69 ~~~I~i~dse~v~raI~~---~~~~~~IdLii~TpG--------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIA 137 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIRE---APKDKPIDLIIHTPG--------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIA 137 (285)
T ss_pred ceeEcHhhHHHHHHHHHh---cCCCCceEEEEECCC--------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHH
Confidence 345777778888777643 345678999999999 999999999999999999999999999999999999
Q ss_pred ccCCCCCeeecCCcEEeeecCC
Q 025131 189 GAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 189 aaG~kgkR~alPnS~iMIHqP~ 210 (257)
++++ +-+|.|+|.+-==.|.
T Consensus 138 LaAD--eIvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 138 LAAD--EIVMGPGAVLGPIDPQ 157 (285)
T ss_pred HhCC--eEEECCCCccCCCCcc
Confidence 9995 5689999988754454
No 28
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.12 E-value=6.4e-05 Score=66.71 Aligned_cols=89 Identities=13% Similarity=0.045 Sum_probs=74.5
Q ss_pred cccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhcc---CCCEEEEEeeeehhHHHH
Q 025131 110 MSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAAL 186 (257)
Q Consensus 110 g~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i---~~~V~Tv~~G~AaS~Asl 186 (257)
...+......++.+|..+..++..+-|.|.||||| |.+.+.-.|++.|+.. +.||.++..| |+|.|-.
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~g--------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~ 94 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLS--------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYY 94 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCC--------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhh
Confidence 34455667889999988887767899999999999 9999999999999755 4689888887 8888888
Q ss_pred HHccCCCCCeeecCCcEEeeecC
Q 025131 187 LLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 187 IlaaG~kgkR~alPnS~iMIHqP 209 (257)
|.++++ +.++.|++.+.+.-.
T Consensus 95 lasaad--~I~a~p~~~vg~iGv 115 (222)
T cd07018 95 LASAAD--EIYLNPSGSVELTGL 115 (222)
T ss_pred hhhhCC--EEEECCCceEEeecc
Confidence 988884 789999999998643
No 29
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00015 Score=71.16 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=82.3
Q ss_pred cEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEee---ee
Q 025131 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG---NA 180 (257)
Q Consensus 104 RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G---~A 180 (257)
.++.+.++|++.+++.+...|..-+. +....+-|.+|+|| |-+++...|...+...+.||..++.= .|
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPG--------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~A 99 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPG--------GLLDSMRQIVRAILNSPVPVIGYVVPDGARA 99 (436)
T ss_pred EEEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCC--------chHHHHHHHHHHHHcCCCCEEEEEcCCCcch
Confidence 46778999999999999888765443 34578999999999 99999999999999999998777653 69
Q ss_pred hhHHHHHHccCCCCCeeecCCcEEeeecCCc
Q 025131 181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIG 211 (257)
Q Consensus 181 aS~AslIlaaG~kgkR~alPnS~iMIHqP~~ 211 (257)
+|+|++|+++.+. =+|.|++.+-=-+|-.
T Consensus 100 aSAGtyI~m~~hi--aaMAPgT~iGaa~Pi~ 128 (436)
T COG1030 100 ASAGTYILMATHI--AAMAPGTNIGAATPIA 128 (436)
T ss_pred hchhhHHHHhcCh--hhhCCCCcccccceec
Confidence 9999999999964 5888999988888864
No 30
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.90 E-value=5.2e-05 Score=72.08 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=62.4
Q ss_pred EEEeCcccChhHHHHHHHHHHhc-hhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHH---HHHhccCCCEEEEEeeee
Q 025131 105 IVYLGMSFVPSVTELILAEFLYL-QYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIY---DVMGYVKPPIFTLCVGNA 180 (257)
Q Consensus 105 IIfLgg~I~~~~a~~iiaqLl~L-~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIy---D~m~~i~~~V~Tv~~G~A 180 (257)
+|.+.|+|+......+..++..+ ....+.+.|.|.||||| |+++..--++ ..++..+.||++.+.++|
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpG--------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~A 165 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPG--------GVVHGYGLAASQLQRLRDAGIPLTVAVDKVA 165 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCC--------CchhHHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 45566888765443332222221 22223367999999999 9987633333 344555579999999999
Q ss_pred hhHHHHHHccCCCCCeeecCCcEEe
Q 025131 181 WGEAALLLGAGAKGNRAALPSSTIM 205 (257)
Q Consensus 181 aS~AslIlaaG~kgkR~alPnS~iM 205 (257)
+|.|=+|.|+++ +-++.|.+.+-
T Consensus 166 ASggY~iAsaAD--~I~A~P~a~vG 188 (330)
T PRK11778 166 ASGGYMMACVAD--KIIAAPFAIVG 188 (330)
T ss_pred hhHHHHHHHhCC--EEEECCCCeEE
Confidence 999999999994 67999998876
No 31
>PRK10949 protease 4; Provisional
Probab=97.82 E-value=0.00042 Score=70.80 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=97.3
Q ss_pred cEEEeCcccChh-------HHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC---CCEE
Q 025131 104 RIVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIF 173 (257)
Q Consensus 104 RIIfLgg~I~~~-------~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~---~~V~ 173 (257)
-+|++.|.|.+. ..+.++.+|.....++..+-|.|.||||| |++.+.-.|++.|+..+ .||.
T Consensus 329 avi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpG--------Gs~~ase~i~~~i~~~r~~gKPVv 400 (618)
T PRK10949 329 AVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVV 400 (618)
T ss_pred EEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCC--------CcHHHHHHHHHHHHHHHhcCCcEE
Confidence 357777877542 24567888877777778899999999999 99999999999997553 5899
Q ss_pred EEEeeeehhHHHHHHccCCCCCeeecCCcEE------eeecCCcc------------ccc-----------CHHHHHHHH
Q 025131 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTI------MIKQPIGR------------IEG-----------QATDVEIAR 224 (257)
Q Consensus 174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~i------MIHqP~~~------------~~G-----------qAsDi~i~a 224 (257)
+...++|||.|=.|.++++ +-++.|.+.+ +.|.-..+ ..| ..++-+..-
T Consensus 401 as~~~~aASggY~iA~aad--~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q 478 (618)
T PRK10949 401 VSMGGMAASGGYWISTPAN--YIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQ 478 (618)
T ss_pred EEECCCCccHHHHHHHhcC--EEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHH
Confidence 8888999999999999995 5788896653 33321100 001 122333333
Q ss_pred HHHHHHHHHHH-HHHHhcCCCHHHHHHHHhh
Q 025131 225 KEMKNVKAELV-LYTEKSPEDHGVVSDLKKA 254 (257)
Q Consensus 225 ~el~~~k~~l~-iY~erTg~~~evI~~l~r~ 254 (257)
..++...+.+. .-++.-+++.++++++-+.
T Consensus 479 ~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~G 509 (618)
T PRK10949 479 LSIENGYKRFITLVADSRHKTPEQIDKIAQG 509 (618)
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHhcC
Confidence 44555555555 5555567888888776543
No 32
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=96.02 E-value=0.046 Score=49.67 Aligned_cols=99 Identities=13% Similarity=0.003 Sum_probs=74.2
Q ss_pred ccCcE--EEeCcccChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEe
Q 025131 101 YKNRI--VYLGMSFVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 177 (257)
Q Consensus 101 l~~RI--IfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~ 177 (257)
++-|. |-+.+++-+.-+....+.|.. + ....-+. +-+|||| |+|.++++.=-.++..+.++..--.
T Consensus 72 ~dgr~l~VvVse~~a~~da~sal~~lir--~-~G~y~~t~v~lnSpG--------Gsv~kA~~mgkLiRe~gfdt~v~s~ 140 (245)
T COG3904 72 LDGRQLPVVVSEPGANVDAASALGRLIR--K-AGLYIATGVTLNSPG--------GSVAKACSMGKLIREDGFDTAVDSG 140 (245)
T ss_pred ccCceeeEEEcCCCCCccHHHHHHHHHh--c-cCceeEEEEEecCCC--------CcHHHHHhhhhhhhhcccCccccch
Confidence 44444 445666655444445555532 1 2233344 7899999 9999999999999999888877778
Q ss_pred eeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
.+|+|.-.+++++| ..|++-+.+.|-+||+...
T Consensus 141 A~CasaCpl~fagG--vrRvve~~ayiGVHq~~~~ 173 (245)
T COG3904 141 AMCASACPLMFAGG--VRRVVEDFAYIGVHQITTT 173 (245)
T ss_pred hhhhccchhhhhcc--eeeeecccceeeeeecccc
Confidence 88999989999999 5789999999999999854
No 33
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.01 E-value=0.037 Score=52.66 Aligned_cols=109 Identities=22% Similarity=0.246 Sum_probs=75.1
Q ss_pred cCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHH---hccCCCEEEEE
Q 025131 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVM---GYVKPPIFTLC 176 (257)
Q Consensus 102 ~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m---~~i~~~V~Tv~ 176 (257)
++|+-..+|.++++....... |..|.... .-||--+||+||.-.+ -|..|. +-+|...+ -..+.|+.+++
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R-~m~lA~~f-~iPvVtlvDTpGa~~g~~aE~~G~---~~aia~~l~a~s~~~VP~IsVV 196 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALR-LMKMAERF-KMPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARLGVPVICTV 196 (316)
T ss_pred cccccccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCCCCCHHHHHHHH---HHHHHHHHHHHHcCCCCEEEEE
Confidence 566667778888866555544 33343332 5799999999993211 111122 23444444 56678999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCccc---ccCH
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI---EGQA 217 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~---~GqA 217 (257)
+|-++|.|++.++.+ +..+|+||+.+.+=.|.+.+ +.++
T Consensus 197 iGeggsGGAla~~~a--D~v~m~~~a~~sVisPEg~a~Il~kd~ 238 (316)
T TIGR00513 197 IGEGGSGGALAIGVG--DKVNMLEYSTYSVISPEGCAAILWKDA 238 (316)
T ss_pred ecccccHHHhhhccC--CEEEEecCceEEecCHHHHHHHhccch
Confidence 999999999887767 46899999999999998653 5554
No 34
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=95.78 E-value=0.076 Score=50.62 Aligned_cols=108 Identities=23% Similarity=0.250 Sum_probs=74.6
Q ss_pred ccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEee
Q 025131 101 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (257)
Q Consensus 101 l~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G 178 (257)
.++++-..+|-++++....... |..+... -.-||--.|++||--.+ -|.-|...++......|-..+.|+.++++|
T Consensus 121 ~~e~~~~~~G~~~peg~rKa~R-~m~lA~~-f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiG 198 (319)
T PRK05724 121 TKEKIRRNFGMPRPEGYRKALR-LMKMAEK-FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIG 198 (319)
T ss_pred ccccccccCCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 4677777788888876555544 3333322 25799999999993321 111122222233344455777899999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
-++|.|++.++.+ +..+|+|+|.+.+=.|.+.
T Consensus 199 eg~sGGAla~~~a--D~v~m~~~A~~svisPEg~ 230 (319)
T PRK05724 199 EGGSGGALAIGVG--DRVLMLEYSTYSVISPEGC 230 (319)
T ss_pred CccHHHHHHHhcc--CeeeeecCceEeecCHHHH
Confidence 9999999888877 4689999999999988765
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=95.77 E-value=0.059 Score=45.59 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=67.5
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCC--------------cccHhhHHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEK--------------LGYETEAFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~--------------~G~v~aGlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++.+.+...|..++.++..+ .+.|.+.|... .|-- ...+.....++..+...+.||.+.+
T Consensus 23 ~~~~~~~~l~~~l~~~~~d~~~~--~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v 100 (195)
T cd06558 23 LSLEMLDELAAALDEAEADPDVR--VVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAV 100 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 46778888888888776533333 23333333211 1110 0123344667777788899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCccc
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI 213 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~ 213 (257)
-|.|.+.|+.+++++ +.|++.++++|.+..+..|.
T Consensus 101 ~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~~G~ 135 (195)
T cd06558 101 NGAALGGGLELALAC--DIRIAAEDAKFGLPEVKLGL 135 (195)
T ss_pred CCeeecHHHHHHHhC--CEEEecCCCEEechhhhcCC
Confidence 999999999999998 57999999999988776543
No 36
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.72 E-value=0.1 Score=47.63 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=66.0
Q ss_pred CCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHh---ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131 132 VEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMG---YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (257)
Q Consensus 132 ~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~---~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI 206 (257)
...||-..+++||.-. .-|..|-.-++-.+.+++. ..+.|+.++++|.++|.|.+-+..+. +..+|+|++.+-.
T Consensus 65 f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~a-d~v~Alp~A~i~v 143 (238)
T TIGR03134 65 DKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQA-DRIIALPGAMVHV 143 (238)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCc-CeEEEcCCcEEEe
Confidence 5789999999999553 2444455555543444444 55599999999999998877765333 5789999999988
Q ss_pred ecCCccc---ccCHHHHHHHHHHHHH
Q 025131 207 KQPIGRI---EGQATDVEIARKEMKN 229 (257)
Q Consensus 207 HqP~~~~---~GqAsDi~i~a~el~~ 229 (257)
=.|.+.+ +-+.++.+..++++..
T Consensus 144 m~~e~aa~I~~~~~~~~~e~a~~~~~ 169 (238)
T TIGR03134 144 MDLESMARVTKRSVEELEALAKSSPV 169 (238)
T ss_pred cCHHHHHHHHccCHhHHHHHHHhhhh
Confidence 7776542 4455555554444433
No 37
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=95.42 E-value=0.1 Score=49.74 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=71.3
Q ss_pred cCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHh----hHHHHHHH---HhccCCCEEE
Q 025131 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET----EAFAIYDV---MGYVKPPIFT 174 (257)
Q Consensus 102 ~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~----aGlAIyD~---m~~i~~~V~T 174 (257)
++|+-..+|-++++....... +..|.... .-||--+|++||.-. |..- .+-+|... |-..+.|+.+
T Consensus 125 ~e~~~~~~G~~~p~g~rKa~R-lm~lA~~f-~lPIItlvDTpGA~~-----G~~AE~~G~~~aiar~l~~~a~~~VP~Is 197 (322)
T CHL00198 125 KENVLRNFGMPSPGGYRKALR-LMKHANKF-GLPILTFIDTPGAWA-----GVKAEKLGQGEAIAVNLREMFSFEVPIIC 197 (322)
T ss_pred hhhhhhcCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCc-----CHHHHHHhHHHHHHHHHHHHHcCCCCEEE
Confidence 555545566687776655544 33333322 579999999999322 2211 12355544 4567789999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
+++|-++|.|++.++.+ +..+|++||.+.+=.|.+.
T Consensus 198 VViGeggsGGAlal~~a--D~V~m~e~a~~sVisPEg~ 233 (322)
T CHL00198 198 TIIGEGGSGGALGIGIG--DSIMMLEYAVYTVATPEAC 233 (322)
T ss_pred EEeCcccHHHHHhhhcC--CeEEEeCCeEEEecCHHHH
Confidence 99999999999888877 5689999999999999765
No 38
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=95.25 E-value=0.095 Score=54.85 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=70.5
Q ss_pred cCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHh---ccCCCEEEEE
Q 025131 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMG---YVKPPIFTLC 176 (257)
Q Consensus 102 ~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~---~i~~~V~Tv~ 176 (257)
++|+-..+|-.+++....... |..+.... .-||--+|++||.-. .-|..|. +-+|...+. ....|+.+++
T Consensus 213 ke~~~rnfG~~~peGyRKAlR-lmkLAekf-gLPIVtLVDTpGA~pG~~AEe~Gq---~~aIArnl~amasl~VP~ISVV 287 (762)
T PLN03229 213 KENIMRNFGMPTPHGYRKALR-MMYYADHH-GFPIVTFIDTPGAYADLKSEELGQ---GEAIAHNLRTMFGLKVPIVSIV 287 (762)
T ss_pred cccccccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCcCCCchhHHHhH---HHHHHHHHHHHhCCCCCEEEEE
Confidence 455555666666665544443 33333222 579999999999322 1122222 334544444 6678999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
+|-++|.|++.++.+ +..+|+|+|.+.+=-|.+.
T Consensus 288 iGeggSGGAlA~g~a--D~VlMle~A~~sVisPEga 321 (762)
T PLN03229 288 IGEGGSGGALAIGCA--NKLLMLENAVFYVASPEAC 321 (762)
T ss_pred eCCcchHHHHHhhcC--CEEEEecCCeEEecCHHHH
Confidence 999999999998888 4689999999998888755
No 39
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=94.96 E-value=0.22 Score=46.03 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=72.2
Q ss_pred cCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHh--h--HHHHHHH---HhccCCCEEE
Q 025131 102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET--E--AFAIYDV---MGYVKPPIFT 174 (257)
Q Consensus 102 ~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~--a--GlAIyD~---m~~i~~~V~T 174 (257)
++++...+|-++++-...... +..|..+. .-||--.+||||.-. |... . +-+|... |-..+.|+.+
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R-~~~lA~~~-~lPvV~lvDtpGa~~-----g~~aE~~G~~~~ia~~~~~~s~~~VP~Is 141 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALR-LMKQAEKF-GRPVVTFINTAGAYP-----GVGAEERGQGEAIARNLMEMSDLKVPIIA 141 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCcCC-----CHhHHhccHHHHHHHHHHHHhCCCCCEEE
Confidence 566666788888876555444 44444333 579999999999322 2211 1 2344444 3455789999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
+++|-++|.|++.++.+ +..+|.|++.+.+=.|.+.
T Consensus 142 VI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v~~pe~~ 177 (256)
T PRK12319 142 IIIGEGGSGGALALAVA--DQVWMLENTMYAVLSPEGF 177 (256)
T ss_pred EEeCCcCcHHHHHhhcC--CEEEEecCceEEEcCHHHH
Confidence 99999999999998877 4689999999999988754
No 40
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=94.65 E-value=0.16 Score=50.11 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=68.4
Q ss_pred CcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHH---hccCCCEEEEEe
Q 025131 103 NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVM---GYVKPPIFTLCV 177 (257)
Q Consensus 103 ~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m---~~i~~~V~Tv~~ 177 (257)
+++--..|-++++.......- +.|... -.-||--+||+||.-.+ -|.-| .+-+|...+ -..+.|+.++++
T Consensus 193 e~~~rnfG~~~peGyRKAlR~-mklAek-f~lPIVtLVDTpGA~pG~~AEe~G---qa~aIAr~l~ams~l~VPiISVVi 267 (431)
T PLN03230 193 ENIYRNFAMPQPNGYRKALRF-MRHAEK-FGFPILTFVDTPGAYAGIKAEELG---QGEAIAFNLREMFGLRVPIIATVI 267 (431)
T ss_pred cccccCCCCCCHHHHHHHHHH-HHHHHH-cCCCEEEEEeCCCcCCCHHHHHHh---HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 333333466777665554443 333322 25799999999993211 01112 123454444 466789999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
|-++|.|++.+++|+ ..+|+|||.+.+=.|.+.
T Consensus 268 GeGgSGGAlalg~aD--~VlMle~A~ysVisPEga 300 (431)
T PLN03230 268 GEGGSGGALAIGCGN--RMLMMENAVYYVASPEAC 300 (431)
T ss_pred CCCCcHHHHHhhcCC--EEEEecCCEEEecCHHHH
Confidence 999999999998884 689999999999888654
No 41
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=93.83 E-value=0.57 Score=42.07 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=65.7
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcc-----------cHhhHHHHHHHHhccCCCEEEEEee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLG-----------YETEAFAIYDVMGYVKPPIFTLCVG 178 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G-----------~v~aGlAIyD~m~~i~~~V~Tv~~G 178 (257)
++.++...+.+.|..++.++ ++. |.|.+.|... .|-.+. .......+++.|..++.||...+-|
T Consensus 29 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G 105 (259)
T PRK06688 29 LTAAMYQALADALEAAATDP---AVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNG 105 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 67888888888888776432 233 3344444221 111111 1122345777888899999999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
.|.+.|.-|++++ +-|++.++++|-+....-|
T Consensus 106 ~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G 137 (259)
T PRK06688 106 PAVGVGVSLALAC--DLVYASESAKFSLPFAKLG 137 (259)
T ss_pred eeecHHHHHHHhC--CEEEecCCCEecCchhhcC
Confidence 9999999999999 4799999999887654433
No 42
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=92.61 E-value=1.2 Score=40.72 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=65.0
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH----------------hhHHHHHHHHhccCCCEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE----------------TEAFAIYDVMGYVKPPIF 173 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v----------------~aGlAIyD~m~~i~~~V~ 173 (257)
++.++..++.+.|..++.+ .++. |.|.+.|... .|-.+..+ .....+++.|..++.||.
T Consensus 41 l~~~~~~eL~~~l~~~~~d---~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 117 (277)
T PRK08258 41 LTFESYAELRDLFRELVYA---DDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPII 117 (277)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6777788888887766642 3343 4444555221 11111111 001246777888999999
Q ss_pred EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
..+-|.|.+.|.-|++++ +-|++.++++|.+.....|
T Consensus 118 AaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~G 154 (277)
T PRK08258 118 AAVDGVCAGAGAILAMAS--DLRLGTPSAKTAFLFTRVG 154 (277)
T ss_pred EEECCeeehHHHHHHHhC--CEEEecCCCEEeccccccC
Confidence 999999999999999999 5799999999988766544
No 43
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=92.49 E-value=1.2 Score=39.94 Aligned_cols=94 Identities=10% Similarity=0.066 Sum_probs=62.3
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEE-EEcCCCCCC-CCCCcccH--------hh-HHHHHHHHhccCCCEEEEEeeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGTTK-GGEKLGYE--------TE-AFAIYDVMGYVKPPIFTLCVGNA 180 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~L-yINSpG~~~-~~~~~G~v--------~a-GlAIyD~m~~i~~~V~Tv~~G~A 180 (257)
++.++.+.+.+.|..++.+ +++.+ .|.+.|... .|-.+..+ .. ...++..|...+.||...+-|.|
T Consensus 24 l~~~~~~~l~~a~~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 100 (248)
T PRK06072 24 LNLEMRNEFISKLKQINAD---PKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVT 100 (248)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 6778888888888777643 34543 334444221 12111111 01 12355667788899999999999
Q ss_pred hhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 181 WGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 181 aS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.+.|.-|++++ +-|++.++++|-+....
T Consensus 101 ~GgG~~lal~c--D~~ia~~~a~f~~~~~~ 128 (248)
T PRK06072 101 AGACIGIALST--DFKFASRDVKFVTAFQR 128 (248)
T ss_pred ehHHHHHHHhC--CEEEEcCCCEEecchhh
Confidence 99999999998 47999999998765554
No 44
>PRK05869 enoyl-CoA hydratase; Validated
Probab=92.48 E-value=1.3 Score=39.33 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=64.8
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH-----------hhH-HHHHHHHhccCCCEEEEEee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE-----------TEA-FAIYDVMGYVKPPIFTLCVG 178 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v-----------~aG-lAIyD~m~~i~~~V~Tv~~G 178 (257)
++.++...+...|..++.++..+ -+.|.+.|... .|-.+..+ ... ..+++.|..++.||.+.+-|
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G 108 (222)
T PRK05869 31 LTRQVYREIVAAANELGRRDDVA--AVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG 108 (222)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 67778888888888777533222 23445545221 11111111 111 34677788889999999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
.|.+.|..|++++ +.|++.++++|-+....-|
T Consensus 109 ~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G 140 (222)
T PRK05869 109 YALGAGLTLALAA--DWRVSGDNVKFGATEILAG 140 (222)
T ss_pred EeecHHHHHHHhC--CEEEecCCCEEcCchhccC
Confidence 9999999999999 5799999998877554433
No 45
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=92.37 E-value=0.56 Score=41.62 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=67.6
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH------------hhHHHHHHHHhccCCCEEEEEee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCVG 178 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v------------~aGlAIyD~m~~i~~~V~Tv~~G 178 (257)
++.++...+...|..++.++..+ -+.|.+.|... .|-.+..+ .....++..|..++.||.+.+-|
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 67788889999888887654333 45555555221 12221111 33466788888999999999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.|.+.|+.+++++ +-|++.+++.|-+....
T Consensus 100 ~a~GgG~~lala~--D~~ia~~~a~f~~pe~~ 129 (245)
T PF00378_consen 100 HAVGGGFELALAC--DFRIAAEDAKFGFPEVR 129 (245)
T ss_dssp EEETHHHHHHHHS--SEEEEETTTEEETGGGG
T ss_pred ccccccccccccc--ceEEeecccceeeeecc
Confidence 9999999999999 57999999996654443
No 46
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=92.35 E-value=3 Score=42.64 Aligned_cols=83 Identities=8% Similarity=0.029 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHhchhcCCCCceEEEEcC-CCCCCCCCCcccHhhHHHHHHHHhccC---CCEEEEEeeeehhHHHHHHc
Q 025131 114 PSVTELILAEFLYLQYEDVEKPIYLYINS-TGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLG 189 (257)
Q Consensus 114 ~~~a~~iiaqLl~L~~~d~~k~I~LyINS-pG~~~~~~~~G~v~aGlAIyD~m~~i~---~~V~Tv~~G~AaS~AslIla 189 (257)
+.....++.+|.....++..+-|.|.||+ || |.+...-.|++.|+..+ .||..+..+. +|.+=+|.+
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g--------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs 145 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSG--------WDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLAS 145 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCC--------CCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhh
Confidence 34667899999888887788999999996 56 67777778999998664 5788776543 344444444
Q ss_pred cCCCCCeeecCCcEEeee
Q 025131 190 AGAKGNRAALPSSTIMIK 207 (257)
Q Consensus 190 aG~kgkR~alPnS~iMIH 207 (257)
++ ++-++.|.+.+.++
T Consensus 146 ~A--D~I~~~p~G~v~~~ 161 (584)
T TIGR00705 146 FA--DEIILNPMGSVDLH 161 (584)
T ss_pred hC--CEEEECCCceEEee
Confidence 45 46899999999764
No 47
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=92.20 E-value=1.3 Score=39.87 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=63.9
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc---------------HhhHHHHHHHHhccCCCEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY---------------ETEAFAIYDVMGYVKPPIFT 174 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~---------------v~aGlAIyD~m~~i~~~V~T 174 (257)
++.++..++.+.|..++.+ +++. |.|.+.|... .|-.+.. ......++..|...+.||..
T Consensus 27 l~~~~~~~l~~~l~~~~~d---~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIA 103 (260)
T PRK07511 27 LHPDMYAAGIEALNTAERD---PSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIA 103 (260)
T ss_pred CCHHHHHHHHHHHHHhccC---CCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 6777888888887776543 3343 4445555221 1111111 11123466778888999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.+.|.|.+.|..|++++ +-|++.++++|-+..-.
T Consensus 104 av~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~ 137 (260)
T PRK07511 104 AVEGAAAGAGFSLALAC--DLLVAARDAKFVMAYVK 137 (260)
T ss_pred EECCeeehHHHHHHHhC--CEEEeeCCCEEeccccc
Confidence 99999999999999999 57999999988875544
No 48
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=91.96 E-value=1.2 Score=40.38 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=63.8
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh----------------------hHHHHHHHHhc
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET----------------------EAFAIYDVMGY 167 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~----------------------aGlAIyD~m~~ 167 (257)
++.++...+.+.|..++.+ +++. |.|-+.|... .|-.+..+. .....++.|..
T Consensus 30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (272)
T PRK06210 30 WTPVMEAEVYAAMDRAEAD---PAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTA 106 (272)
T ss_pred CCHHHHHHHHHHHHHhccC---CCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHh
Confidence 6778888888888777642 2343 4444545221 121111110 01234567888
Q ss_pred cCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 168 i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
++.||.+.+-|.|.+.|.-|++++ +-|++.++++|-+..+.
T Consensus 107 ~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~ 147 (272)
T PRK06210 107 LRKPVIAAINGACAGIGLTHALMC--DVRFAADGAKFTTAFAR 147 (272)
T ss_pred CCCCEEEEECCeeehHHHHHHHhC--CEEEEeCCCEEechHHh
Confidence 999999999999999999999999 57999999999876554
No 49
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=91.93 E-value=1.2 Score=40.34 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=60.4
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH-----------hhHHHHHHHHhccCCCEEEEEe
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLCV 177 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v-----------~aGlAIyD~m~~i~~~V~Tv~~ 177 (257)
++.++...+.+.|..++.+ ++|. |.+.+.|. .. .|-.+..+ ......+..|..++.||.+.+-
T Consensus 26 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 102 (261)
T PRK03580 26 IDAKTSFAMGEVFLNFRDD---PELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN 102 (261)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEEC
Confidence 5677788888887776642 3454 33444441 11 11111110 0123456778888999999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIK 207 (257)
Q Consensus 178 G~AaS~AslIlaaG~kgkR~alPnS~iMIH 207 (257)
|.|.+.|.-|++++ +-|++.++++|-+-
T Consensus 103 G~a~GgG~~lalac--D~~ia~~~a~f~~p 130 (261)
T PRK03580 103 GYAFGGGFELALAA--DFIVCADNASFALP 130 (261)
T ss_pred CeeehHHHHHHHHC--CEEEecCCCEEeCc
Confidence 99999999999999 46999999888653
No 50
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=91.84 E-value=1.3 Score=39.98 Aligned_cols=97 Identities=12% Similarity=0.007 Sum_probs=64.4
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc-----------------Hhh-HHHHHHHHhccCCC
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY-----------------ETE-AFAIYDVMGYVKPP 171 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~-----------------v~a-GlAIyD~m~~i~~~ 171 (257)
++.++...+.+.|..++.++ .++. |.|.+.|... .|-.+.. ... ...++..|...+.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~--~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 105 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGK--AEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP 105 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCC--CceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 67788888888887776422 2244 3344444221 1111111 001 12366778889999
Q ss_pred EEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 172 V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
|.+.+-|.|.+.|..|++++ +-|++.++++|-+..+.-|
T Consensus 106 vIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~~e~~lG 144 (266)
T PRK05981 106 IVTAVNGPAAGVGMSFALMG--DLILCARSAYFLQAFRRIG 144 (266)
T ss_pred EEEEECCEeehHHHHHHHhC--CEEEecCCCEEechHhhcC
Confidence 99999999999999999999 5799999999986665433
No 51
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=91.75 E-value=1.3 Score=44.69 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=71.6
Q ss_pred CcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHH
Q 025131 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL 186 (257)
Q Consensus 109 gg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~Asl 186 (257)
+|.+++..++.+..-+. +..+ -.-||-..+||||... .-|.-|-+..+-.+++++.....|..+++.|.++|.|.+
T Consensus 328 ~G~~~~~~~~K~~r~i~-~a~~-~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIR-FCDA-FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHH-HHHH-cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 56777777766665443 3322 3679999999999421 112224566777778888888899999999999998766
Q ss_pred HHccC--CCCCeeecCCcEEeeecCCcc
Q 025131 187 LLGAG--AKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 187 IlaaG--~kgkR~alPnS~iMIHqP~~~ 212 (257)
.+++. ..+..++.|++++.+=.|.+.
T Consensus 406 am~~~~~~~d~~~a~p~a~~~v~~pe~a 433 (512)
T TIGR01117 406 AMCSKHLGADQVYAWPTAEIAVMGPAGA 433 (512)
T ss_pred HhccccCCCCEEEEcCCCeEeecCHHHH
Confidence 55431 135678999999998888754
No 52
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=91.54 E-value=1.9 Score=38.94 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=65.6
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH----------h---h-HHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------T---E-AFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v----------~---a-GlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++...+.+.|..++.++..+ -|.|.+.|... .|-.+..+ . . ...+++.|...+.||.+.+
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr--~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (257)
T PRK06495 27 LSRELRDELIAVFDEISERPDVR--VVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV 104 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67788888888887776432222 23344555221 12111111 0 0 1235667888899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCccccc
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEG 215 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~G 215 (257)
-|.|.+.|.-|++++ +-|++.++++|-+-...-|..|
T Consensus 105 ~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~ 141 (257)
T PRK06495 105 NGPALGAGLGLVASC--DIIVASENAVFGLPEIDVGLAG 141 (257)
T ss_pred CCeeehhHHHHHHhC--CEEEecCCCEeeChhhccCccc
Confidence 999999999999999 4699999999887655544433
No 53
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=91.13 E-value=1.9 Score=38.83 Aligned_cols=94 Identities=13% Similarity=0.017 Sum_probs=63.8
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEE-cCCCCCC-CCCCcccH-----------hhHHHHHHHHhccCCCEEEEEee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLCVG 178 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSpG~~~-~~~~~G~v-----------~aGlAIyD~m~~i~~~V~Tv~~G 178 (257)
++.++.+.+...|..++.+ +++.+.| .+.|... .|-.+..+ .....++..|..++.||...+-|
T Consensus 30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (251)
T PRK06023 30 ITRAMYATMAKALKAADAD---DAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDG 106 (251)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 6778888888888777643 3444333 3333221 11111110 11234667888899999999999
Q ss_pred eehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.|.+.|..|++++ +-|++.++++|.+....
T Consensus 107 ~a~GgG~~la~ac--D~ria~~~a~f~~pe~~ 136 (251)
T PRK06023 107 LAIGIGTTIHLHC--DLTFASPRSLFRTPFVD 136 (251)
T ss_pred ceecHHHHHHHhC--CEEEEeCCCEecCcccc
Confidence 9999999999999 57999999999875543
No 54
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=91.01 E-value=2.4 Score=38.19 Aligned_cols=90 Identities=19% Similarity=0.137 Sum_probs=60.8
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------h-------hHHHHHHHHhccCCCEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------T-------EAFAIYDVMGYVKPPIF 173 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------~-------aGlAIyD~m~~i~~~V~ 173 (257)
++.++...+.+.|..++.. +++. |.|.+.|... .|-.+..+ . ....+++.|..++.||.
T Consensus 26 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 102 (255)
T PRK07260 26 FNIPMCQEILEALRLAEED---PSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVI 102 (255)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 5677778888877766643 2332 4455555321 11111111 0 11345667888999999
Q ss_pred EEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (257)
Q Consensus 174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI 206 (257)
..+.|.|.+.|..|+++++ -|++.++++|.+
T Consensus 103 aav~G~a~GgG~~lala~D--~ria~~~a~f~~ 133 (255)
T PRK07260 103 MCVDGAVAGAAANMAVAAD--FCIASTKTKFIQ 133 (255)
T ss_pred EEecCeeehhhHHHHHhCC--EEEEeCCCEEec
Confidence 9999999999999999994 699999998875
No 55
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=90.98 E-value=2.1 Score=38.65 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=61.5
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH--------hh-HHHHHHHHhccCCCEEEEEeeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE--------TE-AFAIYDVMGYVKPPIFTLCVGNA 180 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v--------~a-GlAIyD~m~~i~~~V~Tv~~G~A 180 (257)
++.++...+.+.|..++.++ ++. |.|-+.|... .|..++.+ .. ...++..|..++.||...+-|.|
T Consensus 24 l~~~~~~~l~~~l~~~~~~~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 100 (251)
T TIGR03189 24 VDAAMIAALSAALGEHLEDS---ALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQC 100 (251)
T ss_pred CCHHHHHHHHHHHHHHHcCC---CceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCee
Confidence 67788888888887776432 333 4444445221 12211211 10 12356677788999999999999
Q ss_pred hhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 181 WGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 181 aS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
.+.|.-|.++++ -|++.++++|-+-..
T Consensus 101 ~GgG~~lal~cD--~~ia~~~a~f~~pe~ 127 (251)
T TIGR03189 101 LGGGLEVAAAGN--LMFAAPDAKLGQPEI 127 (251)
T ss_pred eeHHHHHHHhCC--EEEEcCCCEEeCchh
Confidence 999999999994 689988888776433
No 56
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=90.93 E-value=1.9 Score=38.85 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=62.3
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh-------hH------------HHHHHHHhccCC
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET-------EA------------FAIYDVMGYVKP 170 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~-------aG------------lAIyD~m~~i~~ 170 (257)
++.++.+.+...|..++.++ +|. |.|.+.|... .|-.+..+. .. ..++..|+.++.
T Consensus 27 l~~~~~~~l~~al~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 103 (262)
T PRK07509 27 LDFAMFEELIATIKRLKKDR---GIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPV 103 (262)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCC
Confidence 67788888888887776432 333 3444444221 121111100 00 123455678899
Q ss_pred CEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
||.+.+-|.|.+.|.-|++++ +-|++.++++|-+....
T Consensus 104 pvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~ 141 (262)
T PRK07509 104 PVIAALEGVCFGGGLQIALGA--DIRIAAPDTKLSIMEAK 141 (262)
T ss_pred CEEEEECCeeecchHHHHHhC--CEEEecCCCEeecchhc
Confidence 999999999999999999999 46999999998876543
No 57
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=90.86 E-value=1.8 Score=38.91 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=59.9
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc-------HhhHHHHHHHHhccCCCEEEEEeeeehh
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY-------ETEAFAIYDVMGYVKPPIFTLCVGNAWG 182 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~-------v~aGlAIyD~m~~i~~~V~Tv~~G~AaS 182 (257)
++.++..++...|..++. + ++. |.|-+.|... .|-.+.. ......++..|..++.||...+-|.|.+
T Consensus 24 l~~~~~~~l~~al~~~~~-~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~G 99 (243)
T PRK07854 24 LNAELCEELREAVRKAVD-E---SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIG 99 (243)
T ss_pred CCHHHHHHHHHHHHHHhc-C---CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Confidence 677888888888776652 2 333 4444545221 1111111 0112346677878899999999999999
Q ss_pred HHHHHHccCCCCCeeecCCcEEee
Q 025131 183 EAALLLGAGAKGNRAALPSSTIMI 206 (257)
Q Consensus 183 ~AslIlaaG~kgkR~alPnS~iMI 206 (257)
.|.-|++++ +-|++.++++|-+
T Consensus 100 gG~~lal~c--D~~ia~~~a~f~~ 121 (243)
T PRK07854 100 AGLQLAMAC--DLRVVAPEAYFQF 121 (243)
T ss_pred cHHHHHHhC--CEEEEcCCCEEec
Confidence 999999999 4699999988875
No 58
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=90.81 E-value=2.2 Score=38.61 Aligned_cols=93 Identities=12% Similarity=0.220 Sum_probs=61.2
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh---------------hHHHHHHHHhccCCCEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET---------------EAFAIYDVMGYVKPPIFT 174 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~---------------aGlAIyD~m~~i~~~V~T 174 (257)
++.++...+.+.|..++.+ ++|. |.|.+.|... .|-.+..+. ....+++.|+.++.||..
T Consensus 29 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 105 (262)
T PRK07468 29 LSARMIAELTTAARRLAAD---AAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIG 105 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 5677777777777666532 3333 4445555221 111111110 012367788899999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
.+-|.|.+.|.-|++++ +-|++.++++|-+-..
T Consensus 106 av~G~a~GgG~~lala~--D~ria~~~a~f~~pe~ 138 (262)
T PRK07468 106 RIQGQAFGGGVGLISVC--DVAIAVSGARFGLTET 138 (262)
T ss_pred EECCEEEhHHHHHHHhC--CEEEEeCCCEEeCchh
Confidence 99999999999999999 4699999988766443
No 59
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=90.80 E-value=2.2 Score=38.48 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=63.1
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------h-hHHHHHHHHhccCCCEEEEEeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------T-EAFAIYDVMGYVKPPIFTLCVGN 179 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------~-aGlAIyD~m~~i~~~V~Tv~~G~ 179 (257)
++.++.+++.+.|..++.+ +++. |.|.+.|... .|-.+..+ . ....+++.|..++.||...+-|.
T Consensus 26 l~~~~~~~L~~~~~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 102 (255)
T PRK09674 26 LNNALLTQLVNELEAAATD---TSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGY 102 (255)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 5677788888887766643 3333 4444444221 12111111 1 11346777888999999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 180 AWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 180 AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
|.+.|.-|++++ +-|++.++++|.+....
T Consensus 103 a~GgG~~lalac--D~~ia~~~a~f~~pe~~ 131 (255)
T PRK09674 103 ALGAGCELALLC--DIVIAGENARFGLPEIT 131 (255)
T ss_pred eehHHHHHHHhC--CEEEecCCCEEeCchhh
Confidence 999999999999 57999999988775544
No 60
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=90.67 E-value=2 Score=38.84 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=63.6
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH------------hhHHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v------------~aGlAIyD~m~~i~~~V~Tv~ 176 (257)
++.+....+.+.|..++.+ +++. |.|-+.|. .. .|-.+..+ .....+++.|...+.||.+.+
T Consensus 31 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 107 (256)
T PRK06143 31 LGTPVILALTQALRWLAAD---PDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI 107 (256)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6778888888888777643 2343 44445441 21 22221211 111346777888999999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
-|.|.+.|.-|++++ +-|++.++++|.+-...
T Consensus 108 ~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~ 139 (256)
T PRK06143 108 PGWCLGGGLELAAAC--DLRIAAHDAQFGMPEVR 139 (256)
T ss_pred CCEEeehhHHHHHhC--CEEEecCCCEEeCCccc
Confidence 999999999999999 46999999988764333
No 61
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=90.63 E-value=2.7 Score=38.23 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=62.4
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc----------HhhHHHHHHHHhccCCCEEEEEeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY----------ETEAFAIYDVMGYVKPPIFTLCVGN 179 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~----------v~aGlAIyD~m~~i~~~V~Tv~~G~ 179 (257)
++.++...+...|..++.+ +++. |.|.+.|... .|-.+.. ......+++.|...+.||...+-|.
T Consensus 28 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 104 (258)
T PRK06190 28 LSAALRRALFAALAEADAD---DDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGA 104 (258)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 6778888888888777643 2333 3444444221 1111111 1112356778888999999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 180 AWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 180 AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
|.+.|.-|++++ +-|++.++++|-+-..
T Consensus 105 a~GgG~~lalac--D~~ia~~~a~f~~pe~ 132 (258)
T PRK06190 105 AVTGGLELALAC--DILIASERARFADTHA 132 (258)
T ss_pred eecHHHHHHHhC--CEEEEeCCCEEECccc
Confidence 999999999999 4799999998875433
No 62
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=90.56 E-value=1.7 Score=39.03 Aligned_cols=93 Identities=11% Similarity=0.022 Sum_probs=61.5
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh---------hHHHHHHHHhccCCCEEEEEeeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET---------EAFAIYDVMGYVKPPIFTLCVGNA 180 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~---------aGlAIyD~m~~i~~~V~Tv~~G~A 180 (257)
++.+...++.+.|..++.+ +++. |.|-+.|... .|-.+..+. ....++..|...+.||.+.+-|.|
T Consensus 29 l~~~~~~~L~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQD---PRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHA 105 (249)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCce
Confidence 5677778888877766643 2333 3344445221 111111110 013567778889999999999999
Q ss_pred hhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 181 WGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 181 aS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
.+.|..|++++ +-|++.++++|-+...
T Consensus 106 ~GgG~~lal~c--D~~ia~~~a~f~~pe~ 132 (249)
T PRK07110 106 IGGGLVLGLYA--DIVVLSRESVYTANFM 132 (249)
T ss_pred echHHHHHHhC--CEEEEeCCCEecCchh
Confidence 99999999999 4799999988766443
No 63
>PLN02600 enoyl-CoA hydratase
Probab=90.54 E-value=2.2 Score=38.36 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=60.2
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEE-EcCCC-CCC-CCCCccc-----------Hhh-HHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTG-TTK-GGEKLGY-----------ETE-AFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~Ly-INSpG-~~~-~~~~~G~-----------v~a-GlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++.+++.+.|..++.+ +++.+. |-+.| ... .|-.+.. ... ...++..|..++.||...+
T Consensus 19 l~~~~~~~l~~~~~~~~~d---~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 95 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQAD---ASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVV 95 (251)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 5777888888887776643 344433 33332 111 1111111 011 1234566778899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
-|.|.+.|.-|.+++ +-|++.++++|.+-.
T Consensus 96 ~G~a~GgG~~lala~--D~~ia~~~a~f~~pe 125 (251)
T PLN02600 96 EGAALGGGLELALSC--DLRICGEEAVFGLPE 125 (251)
T ss_pred cCeecchhHHHHHhC--CEEEeeCCCEEeCcc
Confidence 999999999999999 479999999887733
No 64
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=90.40 E-value=2.6 Score=38.53 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=58.8
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH------------h-------hHHHHHHHHhccCC
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE------------T-------EAFAIYDVMGYVKP 170 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v------------~-------aGlAIyD~m~~i~~ 170 (257)
++.++...+...|..++.+ ++|. |.|.+.|... .|-.+... . ....+++.|..++.
T Consensus 34 l~~~~~~~L~~~l~~~~~d---~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 110 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYD---NSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQ 110 (276)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 5777778888877766642 3444 3344444221 11111100 0 01235567778899
Q ss_pred CEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131 171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (257)
Q Consensus 171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI 206 (257)
||...+-|.|.+.|.-|++++ +-|++.++++|.+
T Consensus 111 PvIaav~G~a~GgG~~Lalac--D~ria~~~a~f~~ 144 (276)
T PRK05864 111 PVIAAVNGPAIGGGLCLALAA--DIRVASSSAYFRA 144 (276)
T ss_pred CEEEEECCEeehhHHHHHHhC--CEEEeeCCCEecC
Confidence 999999999999999999999 4799999888864
No 65
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=90.25 E-value=2.6 Score=38.20 Aligned_cols=92 Identities=14% Similarity=0.205 Sum_probs=59.8
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC--CC-CCCCcccH-----------hhHHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT--TK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~--~~-~~~~~G~v-----------~aGlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++...+.+.|..++. | + +. |.|.+.|+ .. .|-.+..+ ..-..++..|...+.||.+.+
T Consensus 28 l~~~~~~~l~~al~~~~~-d--~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 103 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNR-P--E-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMV 103 (261)
T ss_pred CCHHHHHHHHHHHHHHhc-C--C-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 577788888888776653 2 2 33 34444321 11 11111111 111245677888999999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
-|.|.+.|.-|++++ +-|++.++++|.+-..
T Consensus 104 ~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~ 134 (261)
T PRK11423 104 EGSVWGGAFELIMSC--DLIIAASTSTFAMTPA 134 (261)
T ss_pred ecEEechHHHHHHhC--CEEEecCCCEecCchh
Confidence 999999999999998 4689999988875443
No 66
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=89.84 E-value=2.5 Score=39.05 Aligned_cols=49 Identities=16% Similarity=-0.028 Sum_probs=42.2
Q ss_pred HHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 160 AIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.+++.|..++.||...+-|.|.+.|.-|++++ +-|++.++++|-+....
T Consensus 104 ~~~~~l~~~pkPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~ 152 (296)
T PRK08260 104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAM--DIRLASTAARFGFVFGR 152 (296)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHhHHHHHhC--CEEEeeCCCEEecchhh
Confidence 35677888899999999999999999999999 57999999998876554
No 67
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=89.77 E-value=2.9 Score=37.73 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=61.0
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEE-EEcCCCC-CC-CCCCcccH----------hh-HHHHHHHHhccCCCEEEEEe
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGT-TK-GGEKLGYE----------TE-AFAIYDVMGYVKPPIFTLCV 177 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~L-yINSpG~-~~-~~~~~G~v----------~a-GlAIyD~m~~i~~~V~Tv~~ 177 (257)
++.++...+...|..++.+ ++|.+ .|.+.|. .. .|-.+..+ .. ...+++.|..++.||...+-
T Consensus 26 l~~~~~~~l~~al~~~~~d---~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 102 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYD---RQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ 102 (256)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5667778888877766643 34543 3334341 11 11111111 01 12356778888999999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
|.|.+.|.-|++++ +-|++.++++|-+-.+
T Consensus 103 G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~ 132 (256)
T TIGR03210 103 GYAIGGGNVLVTIC--DLTIASEKAQFGQVGP 132 (256)
T ss_pred CEEehhhHHHHHhC--CEEEEeCCCEEecccc
Confidence 99999999999999 4699999998876443
No 68
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=89.66 E-value=3.5 Score=37.29 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=59.9
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH----------hhHHHHHHHHhccCCCEEEEEeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE----------TEAFAIYDVMGYVKPPIFTLCVGN 179 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v----------~aGlAIyD~m~~i~~~V~Tv~~G~ 179 (257)
++.++...+.+.|..++.+ +++. |.|-+.|... .|-.+..+ .....+++.|..++.||...+-|.
T Consensus 32 l~~~~~~~l~~al~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSED---PDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGY 108 (261)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 6777888888887776543 3444 3333444221 12111111 011245677778899999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 180 AWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 180 AaS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
|.+.|.-|++++ +-|++.++++|.+-.
T Consensus 109 a~GgG~~lalac--D~ria~~~a~f~~pe 135 (261)
T PRK08138 109 ALGGGCELAMHA--DIIVAGESASFGQPE 135 (261)
T ss_pred EEcHHHHHHHhC--CEEEecCCCEeeCcc
Confidence 999999999998 468888888877533
No 69
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=89.37 E-value=2.6 Score=38.42 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=41.5
Q ss_pred HHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 160 AIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.+++.|..++.||...+-|.|.+.|..|++++ +-|++.++++|.+-...
T Consensus 102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~ 150 (275)
T PLN02664 102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTAC--DIRYCSEDAFFSVKEVD 150 (275)
T ss_pred HHHHHHHhCCCCEEEEECCccccchHHHHHhC--CEEEecCCCEeccHHHh
Confidence 35677888899999999999999999999999 46999999998764433
No 70
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=89.32 E-value=3.2 Score=37.31 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=60.2
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH----------hhH-----HHHHHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------TEA-----FAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v----------~aG-----lAIyD~m~~i~~~V~Tv 175 (257)
++.++..++...|..++.++ .+ -|.|.+.|... .|-.+..+ ... -.+++.|..++.||.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 99 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-AR--ALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA 99 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cE--EEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57788888888887776432 22 23344444221 11111110 011 12456788889999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIK 207 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIH 207 (257)
+-|.|.+.|..|++++ +-|++.++++|.+-
T Consensus 100 v~G~a~GgG~~lala~--D~ria~~~a~f~~p 129 (256)
T TIGR02280 100 VNGVAAGAGANLALAC--DIVLAAESARFIQA 129 (256)
T ss_pred ECCeeehHHHHHHHhC--CEEEecCCCEEeCh
Confidence 9999999999999999 57999999988753
No 71
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=89.09 E-value=3.3 Score=37.30 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=62.2
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCC-CCC-CCCCcccH------------hhHHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTG-TTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG-~~~-~~~~~G~v------------~aGlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++..++.+.|..++.+ .++. |.|.+.| ... .|-.+..+ .....++..|...+.||...+
T Consensus 28 l~~~~~~~l~~~~~~~~~d---~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 104 (260)
T PRK05809 28 LNSETLKELDTVLDDIEND---DNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5677777787777666542 3343 3444545 221 12111111 012346777888999999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
-|.|.+.|.-|++++ +-|++.++++|.+....
T Consensus 105 ~G~a~GgG~~lal~c--D~~va~~~a~f~~pe~~ 136 (260)
T PRK05809 105 NGFALGGGCELSMAC--DIRIASEKAKFGQPEVG 136 (260)
T ss_pred cCeeecHHHHHHHhC--CEEEeeCCCEEeCcccc
Confidence 999999999999999 46999999988765443
No 72
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=89.00 E-value=3.7 Score=37.08 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=60.6
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH------------hhHHHHHHHHhccCCCEEEEEe
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCV 177 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v------------~aGlAIyD~m~~i~~~V~Tv~~ 177 (257)
++.++..++...|..++ + ++. |.|-+.|... .|-.+..+ .....+++.|..++.||.+.+-
T Consensus 26 l~~~~~~~l~~al~~~~--~---~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 100 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--E---GVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH 100 (255)
T ss_pred CCHHHHHHHHHHHHHhh--c---CCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 56777788888777665 2 232 3344444221 11111111 1123456778888999999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
|.|.+.|.-|++++ +-|++.++++|.+-...
T Consensus 101 G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~ 131 (255)
T PRK08150 101 GAVVGGGLELASAA--HIRVADESTYFALPEGQ 131 (255)
T ss_pred CEEEcHHHHHHHhC--CEEEEeCCCEEeccccc
Confidence 99999999999999 46999999988764433
No 73
>PRK10949 protease 4; Provisional
Probab=88.93 E-value=1.1 Score=46.27 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhH-HHHHHHHhccC---CCEEEEEeeeehhHHHHHHc
Q 025131 114 PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA-FAIYDVMGYVK---PPIFTLCVGNAWGEAALLLG 189 (257)
Q Consensus 114 ~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aG-lAIyD~m~~i~---~~V~Tv~~G~AaS~AslIla 189 (257)
+....+++..|.....++..+-|.|.|||+| |...+. -.|++.|+..+ .||..+ |-.++.+...+|
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~g--------G~~~a~~~eI~~ai~~fk~sGKpVvA~--~~~~~s~~YyLA 163 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFA--------GADQPSMQYIGKALREFRDSGKPVYAV--GDSYSQGQYYLA 163 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCC--------CccHHHHHHHHHHHHHHHHhCCeEEEE--ecCccchhhhhh
Confidence 3456788998888887778899999999998 765544 68999887665 467654 555566677666
Q ss_pred cCCCCCeeecCCcEEeeecC
Q 025131 190 AGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 190 aG~kgkR~alPnS~iMIHqP 209 (257)
+.. ++-++.|.+.+.++-.
T Consensus 164 SaA-D~I~l~P~G~v~~~G~ 182 (618)
T PRK10949 164 SFA-NKIYLSPQGVVDLHGF 182 (618)
T ss_pred hhC-CEEEECCCceEEEeee
Confidence 544 5689999999887643
No 74
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=88.86 E-value=3.5 Score=37.20 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=62.1
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccHh-----------h-HHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYET-----------E-AFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v~-----------a-GlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++...+...|..++.+ +++. |.|.+.|. .. .|-.+..+. . ...++..|..++.||...+
T Consensus 26 l~~~~~~~l~~al~~~~~d---~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 102 (258)
T PRK09076 26 WTADSLQALKQLVLELNAD---KDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAI 102 (258)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6777888888887777643 2343 44455451 11 122111110 1 1235667888899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
-|.|.+.|.-|++++ +-|++.++++|-+-..
T Consensus 103 ~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~ 133 (258)
T PRK09076 103 NGYAMGGGLECALAC--DIRIAEEQAQMALPEA 133 (258)
T ss_pred CCEEecHHHHHHHhC--CEEEecCCCEeeCccc
Confidence 999999999999999 4699999998876443
No 75
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=88.84 E-value=4.3 Score=36.59 Aligned_cols=94 Identities=15% Similarity=0.216 Sum_probs=62.7
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT 174 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~T 174 (257)
++.++..++...|..++.+ +++. |.|.+.|... .|-.+..+ .....++..|...+.||.+
T Consensus 28 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK05995 28 FNETVIAELTAAFRALDAD---DSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIA 104 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEE
Confidence 6777888888888776643 2343 4455555221 12111110 0112356677788999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.+-|.|.+.|.-|++++ +-|++.++++|.+-...
T Consensus 105 av~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~ 138 (262)
T PRK05995 105 RVHGDAYAGGMGLVAAC--DIAVAADHAVFCLSEVR 138 (262)
T ss_pred EECCEEEhhHHHHHHhC--CEEEeeCCCEEeCcccc
Confidence 99999999999999999 46999999988765444
No 76
>PLN02888 enoyl-CoA hydratase
Probab=88.82 E-value=4.8 Score=36.63 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=61.8
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH--------h-hHHHHHHHHhccCCCEEEEEeeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE--------T-EAFAIYDVMGYVKPPIFTLCVGNA 180 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v--------~-aGlAIyD~m~~i~~~V~Tv~~G~A 180 (257)
++.+....+.+.|..++.++ +|. +.|.+.|... .|-.+..+ . ....++..|..++.||.+.+-|.|
T Consensus 34 l~~~~~~~l~~al~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a 110 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDD---SVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFA 110 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCee
Confidence 67778888888887776432 333 4445555221 12111111 0 112355667888999999999999
Q ss_pred hhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 181 WGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 181 aS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
.+.|..|++++ +-|++.+++.|.+-.
T Consensus 111 ~GgG~~lal~c--D~ria~~~a~f~~pe 136 (265)
T PLN02888 111 ITAGFEIALAC--DILVASRGAKFIDTH 136 (265)
T ss_pred echHHHHHHhC--CEEEecCCCEecCcc
Confidence 99999999999 579999998887643
No 77
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=88.77 E-value=3 Score=37.46 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=61.3
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc------------HhhHHHHHHHHhccCCCEEEEEe
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY------------ETEAFAIYDVMGYVKPPIFTLCV 177 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~------------v~aGlAIyD~m~~i~~~V~Tv~~ 177 (257)
++.++..++...|..++.+ +++. +.|.+.|... .|-.+.. .......+..|...+.||...+-
T Consensus 27 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 103 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEAD---PDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVN 103 (249)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5778888888888777643 3444 3344445221 1111111 11112345567788899999999
Q ss_pred eeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
|.|.+.|.-|++++ +-|++.++++|.+...
T Consensus 104 G~a~GgG~~lal~c--D~ria~~~a~f~~pe~ 133 (249)
T PRK05870 104 GAAVGAGLNLALAA--DVRIAGPKALFDARFQ 133 (249)
T ss_pred CEeEchhHHHHHhC--CEEEEcCCCEEeCccc
Confidence 99999999999999 4799999998876544
No 78
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=88.58 E-value=3.8 Score=40.28 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=64.5
Q ss_pred CcEEEeCcc-----cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC--CCCC--c------ccHhhHH-------
Q 025131 103 NRIVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK--GGEK--L------GYETEAF------- 159 (257)
Q Consensus 103 ~RIIfLgg~-----I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~--~~~~--~------G~v~aGl------- 159 (257)
-++|.|.-| ++.++...+...|..++.++ +|. +.|.+.|... ++.+ + |....+.
T Consensus 52 ~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~---~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~ 128 (407)
T PLN02851 52 SRAAILNRPSSLNALTIPMVARLKRLYESWEENP---DIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLY 128 (407)
T ss_pred EEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHH
Confidence 457777776 78889999999998877543 344 3344444211 1111 0 0001111
Q ss_pred HHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 160 AIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
.+...|...+.||...+.|.|.+.|.-|.++++ .|++.++++|-+-..
T Consensus 129 ~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D--~rVate~a~famPE~ 176 (407)
T PLN02851 129 KFVYLQGTYLKPNVAIMDGITMGCGAGISIPGM--FRVVTDKTVFAHPEV 176 (407)
T ss_pred HHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCC--EEEEeCCceEecchh
Confidence 122345567889999999999999999999984 677777777665433
No 79
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=88.57 E-value=4.5 Score=36.42 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=62.9
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH------hh-------HHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE------TE-------AFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v------~a-------GlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++...+.+.|..++.+ +++. |.|.+.|... .|-.+..+ .. ....++.|..++.||...+
T Consensus 25 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav 101 (249)
T PRK07938 25 LPSAGWFALADAITAAGAD---PDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAV 101 (249)
T ss_pred CCHHHHHHHHHHHHHhhcC---CCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6677778888877766543 3333 4445555221 12111111 00 1235667778899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
-|.|.+.|.-|++++ +-|++.++++|.+-...-|
T Consensus 102 ~G~a~GgG~~Lal~c--D~ria~~~a~f~~pe~~~G 135 (249)
T PRK07938 102 HGFCLGGGIGLVGNA--DVIVASDDATFGLPEVDRG 135 (249)
T ss_pred cCEEeehHHHHHHhC--CEEEEeCCCEeeCccceec
Confidence 999999999999999 4699999998876444333
No 80
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=88.55 E-value=3.1 Score=37.50 Aligned_cols=92 Identities=12% Similarity=0.141 Sum_probs=60.4
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH----------------hhHHHHHHHHhccCCCE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE----------------TEAFAIYDVMGYVKPPI 172 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v----------------~aGlAIyD~m~~i~~~V 172 (257)
++.++..++...|..++.+ ++|. |.|-+.|. .. .|-.+..+ .....+++.|..++.||
T Consensus 27 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 103 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVD---ESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPV 103 (260)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCE
Confidence 5777888888887776643 2333 33344441 21 11111110 00123566788889999
Q ss_pred EEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 173 ~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
...+-|.|.+.|.-|++++ +-|++.++++|.+-.
T Consensus 104 Iaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe 137 (260)
T PRK05980 104 IAAVNGLAFGGGCEITEAV--HLAIASERALFAKPE 137 (260)
T ss_pred EEEEcCEEEhhhhHHhHhC--CEEEecCCCEecCcc
Confidence 9999999999999999998 469999998887633
No 81
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=88.27 E-value=3.9 Score=36.97 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=62.7
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH-------------hhHHHHHHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v-------------~aGlAIyD~m~~i~~~V~Tv 175 (257)
++.++..++.+.|..++.+ +++. |.|-+.|. .. .|-.+... .....+++.|..++.||...
T Consensus 27 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 103 (259)
T TIGR01929 27 FRPLTVKEIIQALDDARED---PDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAM 103 (259)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5677778888877766542 3343 33444441 11 11111100 01124567788889999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
+-|.|.+.|.-|++++ +-|++.++++|.+-...-|
T Consensus 104 v~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G 138 (259)
T TIGR01929 104 VNGYAIGGGHVLHVVC--DLTIAAENARFGQTGPKVG 138 (259)
T ss_pred EcCEEehHHHHHHHhC--CEEEecCCCEecCcccccc
Confidence 9999999999999999 4699999999887655433
No 82
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=88.21 E-value=3.1 Score=37.75 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=63.0
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH-----------------------hhHHHHHHHHh
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE-----------------------TEAFAIYDVMG 166 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v-----------------------~aGlAIyD~m~ 166 (257)
++.++...+.+.|..++.+ ++|. |.|.+.|... .|-.+..+ .....+++.|.
T Consensus 30 l~~~~~~~l~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 106 (272)
T PRK06142 30 MNPAFWSELPEIFRWLDAD---PEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVA 106 (272)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 6778888888888776642 3444 3444445221 11111100 01134567788
Q ss_pred ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.++.||...+-|.|.+.|.-|+++++ -|++.++++|-+....
T Consensus 107 ~~~kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~ 148 (272)
T PRK06142 107 DCRKPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVREVD 148 (272)
T ss_pred hCCCCEEEEecCccccchHHHHHhCC--EEEecCCCeecchhhh
Confidence 89999999999999999999999994 6999999988665444
No 83
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=88.15 E-value=2.4 Score=39.00 Aligned_cols=93 Identities=6% Similarity=-0.039 Sum_probs=60.5
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCC--CCC-CCCCcccHh---------h----H-HHHHHHHhccCCCEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTG--TTK-GGEKLGYET---------E----A-FAIYDVMGYVKPPIF 173 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG--~~~-~~~~~G~v~---------a----G-lAIyD~m~~i~~~V~ 173 (257)
++.+...++.+.|..++.++ +|. |.|-+.| ... .|-.+..+. . . ..+++.|..++.+|.
T Consensus 35 l~~~~~~eL~~al~~~~~d~---~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 111 (278)
T PLN03214 35 MTLAMWRSLDDALTALENDP---TVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATV 111 (278)
T ss_pred CCHHHHHHHHHHHHHHHcCC---CceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 67778888888887776432 333 2333433 111 111111100 0 0 124567788889999
Q ss_pred EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
..+-|.|.+.|..|++++ +.|++.++++|-+-..
T Consensus 112 AaV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~ 145 (278)
T PLN03214 112 CAIRGACPAGGCAVSLCC--DYRLQTTEGTMGLNEV 145 (278)
T ss_pred EEEcCcccchHHHHHHhC--CEEEecCCCEecCcHH
Confidence 999999999999999999 5799999998876443
No 84
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=88.14 E-value=0.77 Score=45.79 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=69.6
Q ss_pred EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHH
Q 025131 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA 184 (257)
Q Consensus 107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~A 184 (257)
+.+|.++.+.+.....-+-..+.. .-||-..+|.||-..+ -|.-|-+-.|-.+.+++...+.|+.|+++|.++|.|
T Consensus 305 ~~~G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga 382 (493)
T PF01039_consen 305 QRAGALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGA 382 (493)
T ss_dssp CGGGEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHH
T ss_pred cccccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcc
Confidence 445778887776665544333432 4699999999994432 222366777899999999999999999999999987
Q ss_pred HHHHccCC--CCCeeecCCcEEeeecCCcc
Q 025131 185 ALLLGAGA--KGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 185 slIlaaG~--kgkR~alPnS~iMIHqP~~~ 212 (257)
.+.+++.. .+..++.|++++-+-.|.+.
T Consensus 383 ~~am~~~~~~~~~~~Awp~a~~~vm~~e~a 412 (493)
T PF01039_consen 383 YYAMCGRGYGPDFVFAWPTAEIGVMGPEGA 412 (493)
T ss_dssp HHHTTGGGGTTSEEEEETT-EEESS-HHHH
T ss_pred hhhhcccccchhhhhhhhcceeeecChhhh
Confidence 76666542 23578899999998877755
No 85
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=88.10 E-value=5.5 Score=35.91 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=60.5
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH--------------hhH--HHHHHHHhccCCCEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE--------------TEA--FAIYDVMGYVKPPIFT 174 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v--------------~aG--lAIyD~m~~i~~~V~T 174 (257)
++.++...+.+.|..++ ++..+ -|.|-+.|... .|-.+... ... -.++..|..++.||.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGAR--ALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIA 104 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCce--EEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57778888888887776 43222 23333444221 11111110 000 1256678888999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
.+-|.|.+.|.-|++++ +-|++.++++|.+-.
T Consensus 105 av~G~a~GgG~~lalac--D~ria~~~a~f~~pe 136 (262)
T PRK08140 105 AVNGVAAGAGANLALAC--DIVLAARSASFIQAF 136 (262)
T ss_pred EECCeeehhHHHHHHhC--CEEEecCCCEEeccc
Confidence 99999999999999999 579999999987533
No 86
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=87.91 E-value=2.7 Score=39.92 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=65.1
Q ss_pred EeCcccChhHHHHHHHHHHhchhcCC----CCceEEEEcCCCCCCCCCCcccHhhHH-------HHHHHHhccC--CCEE
Q 025131 107 YLGMSFVPSVTELILAEFLYLQYEDV----EKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIF 173 (257)
Q Consensus 107 fLgg~I~~~~a~~iiaqLl~L~~~d~----~k~I~LyINSpG~~~~~~~~G~v~aGl-------AIyD~m~~i~--~~V~ 173 (257)
|++|.+.+...+.+...+ .+..++. ..|+-+.+.|.| +...+|. .|+..+...+ .|+.
T Consensus 79 f~GGS~G~~~g~Ki~r~~-e~A~~~~~~~~~~PvV~l~dSGG--------aRlqEg~~~L~~~a~i~~~~~~ls~~VP~I 149 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGAL-ELAAEDNRNGIPTAVLLLFETGG--------VRLQEANAGLAAIAEIMRAIVDLRAAVPVI 149 (301)
T ss_pred ccCcCcCHHHHHHHHHHH-HHHHHhCCCCCCCCEEEEecCCC--------cCccchHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 668888887777777644 4444443 268999999999 5544433 2343333333 6999
Q ss_pred EEEeee--ehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 174 TLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 174 Tv~~G~--AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
+++.|- |++-++++.+.+ +..+|.+++++.+--|.
T Consensus 150 ~vv~G~~gc~GG~a~~a~l~--D~iIm~~~a~iglaGP~ 186 (301)
T PRK07189 150 GLIGGRVGCFGGMGIAAALC--SYLIVSEEGRLGLSGPE 186 (301)
T ss_pred EEEcCCCCCcHHHHHHHhcC--CEEEEECCcEEeccCHH
Confidence 999998 777777777777 46789999999887663
No 87
>PLN02921 naphthoate synthase
Probab=87.80 E-value=5.1 Score=38.03 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=64.1
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEE-cCCCC-CC-CCCCcccH----------hh---HHHHHHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGT-TK-GGEKLGYE----------TE---AFAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSpG~-~~-~~~~~G~v----------~a---GlAIyD~m~~i~~~V~Tv 175 (257)
++.++...+.+.|..++.+ ++|.+.| -+.|. .. .|--+..+ .. ...++..|..++.||...
T Consensus 91 l~~~~~~eL~~al~~~~~d---~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 167 (327)
T PLN02921 91 FRPRTVKELQRAFNDARDD---SSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAM 167 (327)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6788888888888777643 3454433 33331 11 11111110 01 123456778889999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
+-|.|.+.|..|++++ +-|++.++++|.+..+..|
T Consensus 168 VnG~a~GGG~~Lalac--D~riA~~~A~f~~pe~~~G 202 (327)
T PLN02921 168 VAGYAVGGGHILHMVC--DLTIAADNAVFGQTGPKVG 202 (327)
T ss_pred ECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccC
Confidence 9999999999999999 5799999999988666543
No 88
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=87.45 E-value=6.8 Score=35.21 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=60.9
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh------------hHHH-HHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET------------EAFA-IYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~------------aGlA-IyD~m~~i~~~V~Tv~ 176 (257)
++.++..++...|..++.+ +++. |.|-+.|... .|-.+..+. .... .+..|+.++.||.+.+
T Consensus 23 l~~~~~~~l~~~l~~~~~d---~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 99 (255)
T PRK06563 23 FDSAMLDDLALALGEYEAD---DELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAV 99 (255)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEE
Confidence 5677788888877766542 3344 4444545221 222111110 0111 2234677889999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
-|.|.+.|..|++++ +-|++.++++|-+....
T Consensus 100 ~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~ 131 (255)
T PRK06563 100 QGYCLTLGIELMLAA--DIVVAADNTRFAQLEVQ 131 (255)
T ss_pred cCeeecHHHHHHHhC--CEEEecCCCEEeChhhh
Confidence 999999999999999 57999999998775544
No 89
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=87.34 E-value=5.7 Score=36.11 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=59.1
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh--------------hHHHHHHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET--------------EAFAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~--------------aGlAIyD~m~~i~~~V~Tv 175 (257)
++.++...+.+.|..++.+ ++|. |.|.+.|... .|-.+..+. ....++..|..++.||...
T Consensus 36 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 112 (268)
T PRK07327 36 ADARMHRELADIWRDVDRD---PDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSA 112 (268)
T ss_pred CCHHHHHHHHHHHHHhhhC---CCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 5778888888888777653 2343 3344444221 121111110 0123445567788999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMI 206 (257)
+-|.|.+.|.-|++++ +-|++.++++|-+
T Consensus 113 v~G~a~GgG~~lalac--D~ria~~~a~f~~ 141 (268)
T PRK07327 113 IHGPAVGAGLVAALLA--DISIAAKDARIID 141 (268)
T ss_pred EcCeeeehhhHHHHhC--CEEEecCCCEEeC
Confidence 9999999999999999 4689989888865
No 90
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=87.19 E-value=4.4 Score=37.97 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=64.0
Q ss_pred EeCcccChhHHHHHHHHHHhchhc----CCCCceEEEEcCCCCCCCCCCcccHhhHH-------HHHHHHhccC--CCEE
Q 025131 107 YLGMSFVPSVTELILAEFLYLQYE----DVEKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIF 173 (257)
Q Consensus 107 fLgg~I~~~~a~~iiaqLl~L~~~----d~~k~I~LyINSpG~~~~~~~~G~v~aGl-------AIyD~m~~i~--~~V~ 173 (257)
|++|-+.+...+.++..+ .+..+ ...-|+-+.+.|.| +.+.+|. -|+..+...+ .|+.
T Consensus 70 ~~GGS~G~~~g~Ki~r~~-e~A~~~~~~~~~~PvV~l~dSgG--------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~I 140 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGAL-RLAIEDNRKGQPTAVVLLLDTGG--------VRLQEANAGLIAIAEIMRAILDARAAVPVI 140 (274)
T ss_pred ccCcCCCHHHHHHHHHHH-HHHHhhhhccCCCCEEEEEcCCC--------cChhhhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 668888887777776644 34433 12348999999999 5555543 2333333233 6999
Q ss_pred EEEeee--ehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 174 TLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 174 Tv~~G~--AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
+++.|- |++-++++.+.++ ..+|.|++++.+--|.
T Consensus 141 svv~Gp~gc~GG~a~~a~l~D--~vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 141 GVIGGRVGCFGGMGIAAGLCS--YLIMTEEGRLGLSGPE 177 (274)
T ss_pred EEEeCCCCcchHHHHHHhcCC--EEEEeCCcEEeccCHH
Confidence 999999 6777777777774 5789999999887663
No 91
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=87.17 E-value=5.1 Score=36.66 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=60.9
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH-----------h-----hHHHHHHHHhccCCCEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE-----------T-----EAFAIYDVMGYVKPPIF 173 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v-----------~-----aGlAIyD~m~~i~~~V~ 173 (257)
++.++...+...|..++.+ +++. |.|.+.|... .|-.+... . ....+++.|..++.||.
T Consensus 32 l~~~m~~el~~al~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 108 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFD---DDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI 108 (275)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6777888888877766643 3343 4444545221 11111111 0 11235667788899999
Q ss_pred EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
..+.|.|.+.|.-|++++ +-|++.++++|.+-.
T Consensus 109 Aav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe 141 (275)
T PRK09120 109 AMVNGWCFGGGFSPLVAC--DLAIAADEAQFGLSE 141 (275)
T ss_pred EEEcCEEechhHHHHHhC--CEEEEeCCcEecCCc
Confidence 999999999999999999 469999999887643
No 92
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=87.17 E-value=4.2 Score=36.72 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=40.9
Q ss_pred HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
+++.|..++.||...+-|.|.+.|.-|++++ +-|++.++++|.+....
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~ 142 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAESFVK 142 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEcccccc
Confidence 5667788899999999999999999999999 57999999988765444
No 93
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=86.92 E-value=4.7 Score=39.14 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=62.8
Q ss_pred EEEeCcc-----cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC--CCCCcccHh----------------hHHH
Q 025131 105 IVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK--GGEKLGYET----------------EAFA 160 (257)
Q Consensus 105 IIfLgg~-----I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~--~~~~~G~v~----------------aGlA 160 (257)
+|.|.-| ++.++...+.+.|..++.++ +|. |.|-+.|... ++.+ ..+. ....
T Consensus 21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~---~v~~VVl~G~G~~FcAGgDl-~~l~~~~~~~~~~~~~~~f~~~~~ 96 (381)
T PLN02988 21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDP---SVKLVILKGHGRAFCAGGDV-AAVVRDIEQGNWRLGANFFSDEYM 96 (381)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCC---CeeEEEEECCCCCcccCcCH-HHHHhhhcccchhHHHHHHHHHHH
Confidence 4555554 67788899999988776432 343 4455555211 1111 1111 0112
Q ss_pred HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
....|..++.||.+.+.|.|.+.|.-|.+++ +.|++.++++|-+-.
T Consensus 97 l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~mPE 142 (381)
T PLN02988 97 LNYVMATYSKAQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAMPE 142 (381)
T ss_pred HHHHHHHCCCCEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeChh
Confidence 2235667889999999999999999999998 468888888776533
No 94
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=86.57 E-value=3.7 Score=37.94 Aligned_cols=51 Identities=10% Similarity=-0.079 Sum_probs=41.5
Q ss_pred HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCccc
Q 025131 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI 213 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~ 213 (257)
++..|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|.+-...-|.
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalac--D~ria~e~a~f~~pe~~lGl 160 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVC--DLIVASDDAFFSDPVVRMGI 160 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhC--CEEEeeCCCEecCcccccCc
Confidence 4456778899999999999999999999999 46999999988764444343
No 95
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=86.51 E-value=4.8 Score=38.26 Aligned_cols=93 Identities=13% Similarity=0.175 Sum_probs=61.0
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEE-EcCCC-CCC-CCCCcccHh----------------hHHHHHHHHhccCCCE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTG-TTK-GGEKLGYET----------------EAFAIYDVMGYVKPPI 172 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~Ly-INSpG-~~~-~~~~~G~v~----------------aGlAIyD~m~~i~~~V 172 (257)
++.++...+.+.|..++. +++|.+. |.+.| ... .|-.+..+. ....++..|..++.||
T Consensus 27 l~~~m~~~L~~~l~~~~~---d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 103 (342)
T PRK05617 27 LSLEMIRAIDAALDAWED---DDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPY 103 (342)
T ss_pred CCHHHHHHHHHHHHHHhh---CCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence 677777888887776654 3445533 34444 221 111111110 1123556677889999
Q ss_pred EEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 173 ~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
...+-|.|.+.|.-|.+++ +-|++.++++|.+-..
T Consensus 104 IAaVnG~a~GgG~~Lalac--D~ria~~~a~f~~pe~ 138 (342)
T PRK05617 104 IALMDGIVMGGGVGISAHG--SHRIVTERTKMAMPET 138 (342)
T ss_pred EEEEcCEEEccHhHHhhhC--CEEEEcCCCEeeCCcc
Confidence 9999999999999999999 4799999998876443
No 96
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=86.46 E-value=7.9 Score=34.82 Aligned_cols=92 Identities=11% Similarity=0.127 Sum_probs=60.2
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc--------H--hhHHHHHHHHhccCCCEEEEEeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY--------E--TEAFAIYDVMGYVKPPIFTLCVGN 179 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~--------v--~aGlAIyD~m~~i~~~V~Tv~~G~ 179 (257)
++.++...+.+.|..++.+ +++. |.|-+.|... .|-.+.. . ......+..|..++.||...+-|.
T Consensus 28 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~ 104 (257)
T PRK05862 28 LNDALMDELGAALAAFDAD---EGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGY 104 (257)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 5677778888877766643 3343 3333444221 1211111 1 112345677888899999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 180 AWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 180 AaS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
|.+.|.-|++++ +.|++.++++|-+-.
T Consensus 105 a~GgG~~lalac--D~~ia~~~a~f~~pe 131 (257)
T PRK05862 105 ALGGGCELAMMC--DIIIAADTAKFGQPE 131 (257)
T ss_pred EeHHHHHHHHHC--CEEEEeCCCEEeCch
Confidence 999999999999 468998888877533
No 97
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=86.41 E-value=5.5 Score=35.75 Aligned_cols=92 Identities=13% Similarity=0.119 Sum_probs=60.9
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc------------H-hhHHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY------------E-TEAFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~------------v-~aGlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++...+.+.|..++.+ +++. |.|.+.|... .|-.+.. . .....++..|..++.||...+
T Consensus 25 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav 101 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKD---DNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAI 101 (257)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5777788888877766643 2333 3445555221 1111110 0 112346777888999999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
-|.|.+.|.-|++++ +-|++.++++|-+-.
T Consensus 102 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe 131 (257)
T PRK07658 102 HGAALGGGLELAMSC--HIRFATESAKLGLPE 131 (257)
T ss_pred cCeeeeHHHHHHHhC--CEEEecCCCcccCcc
Confidence 999999999999999 479999988877644
No 98
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=86.21 E-value=6.8 Score=35.30 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=63.4
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH--------h----hHHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE--------T----EAFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v--------~----aGlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++...+.+.|..++.+ .+|. |.|.+.|. .. .|-.+..+ . ....+++.|..++.||...+
T Consensus 28 l~~~~~~~l~~al~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 104 (260)
T PRK07657 28 LSLALLEELQNILTQINEE---ANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6778888888888776643 3343 44445452 21 22111111 0 11345677788899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
-|.|.+.|.-|++++ +-|++.++++|.+-...
T Consensus 105 ~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~ 136 (260)
T PRK07657 105 NGIALGGGLELALAC--DFRIAAESASLGLTETT 136 (260)
T ss_pred cCEeechHHHHHHhC--CEEEeeCCCEEcCchhc
Confidence 999999999999999 57999999988765443
No 99
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=86.15 E-value=4.6 Score=36.61 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=59.6
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH-------------hhHHHHHHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v-------------~aGlAIyD~m~~i~~~V~Tv 175 (257)
++.++.+++...|..++.+ +++. |.|.+.|. .. .|-.+..+ .....++..|..++.||.+.
T Consensus 32 l~~~~~~~l~~~l~~~~~d---~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 108 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAAD---PSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAA 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4667778888887766542 3444 33444441 11 11111111 01123556677889999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIK 207 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIH 207 (257)
+-|.|.+.|.-|++++ +-|++.++++|-+-
T Consensus 109 v~G~a~GgG~~lala~--D~~ia~~~a~f~~p 138 (262)
T PRK06144 109 IAGACVGGGAAIAAAC--DLRIATPSARFGFP 138 (262)
T ss_pred ECCeeeehHHHHHHhC--CEEEecCCCEeech
Confidence 9999999999999999 57999999998653
No 100
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=86.10 E-value=5.8 Score=36.04 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=59.1
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT 174 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~T 174 (257)
++.++...+.+.|..++.+ +++. |.|-+.|... .|-.+..+ .....++..|..++.||..
T Consensus 30 l~~~~~~el~~al~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (265)
T PRK05674 30 FNAQMIRELILALDQVQSD---ASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLA 106 (265)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEE
Confidence 5667777777777766543 3444 3334444221 11111110 0012345567788899999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
.+-|.|.+.|.-|++++ +-|++.++++|.+-.
T Consensus 107 aV~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe 138 (265)
T PRK05674 107 VVQGAAFGGALGLISCC--DMAIGADDAQFCLSE 138 (265)
T ss_pred EEcCEEEechhhHhhhc--CEEEEeCCCEEeCcc
Confidence 99999999999999999 468999998887633
No 101
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=86.08 E-value=8.2 Score=34.83 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=58.1
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccHh---------hHHHHHHHHhccCCCEEEEEeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYET---------EAFAIYDVMGYVKPPIFTLCVGN 179 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v~---------aGlAIyD~m~~i~~~V~Tv~~G~ 179 (257)
++.++..++...|..++.+ +++. |.|-+.|. .. .|-.+.... ..+.-+..+..++.||...+-|.
T Consensus 28 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~ 104 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAAD---PEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGV 104 (259)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCE
Confidence 5677778888887776643 3343 33334341 11 121111110 11111222345678999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 180 AWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 180 AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
|.+.|.-|++++ +-|++.++++|-+....
T Consensus 105 a~GgG~~lalac--D~ria~~~a~f~~pe~~ 133 (259)
T PRK06494 105 AMGGGFELALAC--DLIVAAENATFALPEPR 133 (259)
T ss_pred EecHHHHHHHhC--CEEEEeCCCEEeCcccc
Confidence 999999999999 47999999988775544
No 102
>PRK08321 naphthoate synthase; Validated
Probab=85.92 E-value=7.6 Score=36.12 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=38.8
Q ss_pred HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeec-CCcEEeeecC
Q 025131 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIKQP 209 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~al-PnS~iMIHqP 209 (257)
+++.|..++.||...+-|.|.+.|.-|++++ +-|++. ++++|-+-..
T Consensus 127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~ 174 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVC--DLTLASREHARFKQTDA 174 (302)
T ss_pred HHHHHHcCCCCEEEEEcCeeehHHHHHHHhC--CEEEEecCCCEEECCcc
Confidence 4456778889999999999999999999999 469998 6898876433
No 103
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=85.85 E-value=6.9 Score=35.71 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=62.3
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH----------hh---HHHHHHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE----------TE---AFAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v----------~a---GlAIyD~m~~i~~~V~Tv 175 (257)
++.++...+.+.|..++.+ ++|. |.|-+.|. .. .|-.+... .. ...+++.|..++.||...
T Consensus 37 l~~~~~~~l~~al~~~~~d---~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 113 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDD---DNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAM 113 (273)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 6778888888888777643 3343 33334341 11 11111100 01 123566778889999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
+-|.|.+.|.-|++++ +-|++.++++|-+-.+.
T Consensus 114 v~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~ 146 (273)
T PRK07396 114 VAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPK 146 (273)
T ss_pred ECCEEehHHHHHHHhC--CEEEeeCCcEEeccccc
Confidence 9999999999999999 57999999998875554
No 104
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=85.81 E-value=7 Score=36.19 Aligned_cols=44 Identities=9% Similarity=-0.064 Sum_probs=38.2
Q ss_pred HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI 206 (257)
++..|...+.||...+-|.|.+.|.-|++++ +-|++.++++|-+
T Consensus 119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~~ias~~a~f~~ 162 (302)
T PRK08272 119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHC--DQVIAADDAKIGY 162 (302)
T ss_pred HHHHHHhCCCCEEEEEccEeehhhHHHHHhC--CEEEEeCCCEecC
Confidence 4667778899999999999999999999999 4699999988754
No 105
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=85.80 E-value=7.5 Score=35.05 Aligned_cols=94 Identities=4% Similarity=-0.045 Sum_probs=61.0
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEE-cCCCCCC-CCCCcccH--------------hhHHHHHHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYE--------------TEAFAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSpG~~~-~~~~~G~v--------------~aGlAIyD~m~~i~~~V~Tv 175 (257)
++.++..++.+.|..++ + ++.+.| -+.|... .|-.+..+ .....++..|...+.||...
T Consensus 28 l~~~~~~~L~~~l~~~~--~---~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 102 (255)
T PRK07112 28 INDRLIAECMDVLDRCE--H---AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAH 102 (255)
T ss_pred CCHHHHHHHHHHHHHhh--c---CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEE
Confidence 57778888888877665 1 244333 3333221 11111110 01123566677888999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
+-|.|.+.|..|+++++ -|++.++++|-+....-|
T Consensus 103 v~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~G 137 (255)
T PRK07112 103 VRGKVNAGGIGFVAASD--IVIADETAPFSLSELLFG 137 (255)
T ss_pred EecEEEcchhHHHHcCC--EEEEcCCCEEeCchhhhc
Confidence 99999999999999994 799999999877555433
No 106
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=85.23 E-value=5 Score=37.32 Aligned_cols=48 Identities=13% Similarity=-0.011 Sum_probs=41.3
Q ss_pred HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.+..|..++.||...+-|.|.+.|.-|++++ +-|++.++++|-+-...
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~A~f~~pe~~ 151 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCA--DIVIASDDAVIGTPYSR 151 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHC--CEEEEcCCcEEeccccc
Confidence 4556778899999999999999999999999 46999999998876554
No 107
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=84.85 E-value=9.2 Score=34.77 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=63.5
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH-------h------h-HHHHHHHHhccCCCEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-------T------E-AFAIYDVMGYVKPPIFT 174 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v-------~------a-GlAIyD~m~~i~~~V~T 174 (257)
++.++...+.+.|..++.+ .++. |.|.+.|. .. .|-.+..+ . . ...+++.|..++.||..
T Consensus 35 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa 111 (269)
T PRK06127 35 MSLDMWEALPQALAAAEDD---DAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIA 111 (269)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 6778888888888777643 2333 33445441 21 11111110 0 1 12355677888999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCc
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIG 211 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~ 211 (257)
.+-|.|.+.|.-|++++ +-|++.++++|.+.....
T Consensus 112 av~G~a~GgG~~Lalac--D~~ia~~~a~f~~pe~~~ 146 (269)
T PRK06127 112 CIRGYCIGGGMGIALAC--DIRIAAEDSRFGIPAARL 146 (269)
T ss_pred EECCEEecHHHHHHHhC--CEEEeeCCCEeeCchhhh
Confidence 99999999999999999 579999999998765543
No 108
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=84.84 E-value=12 Score=33.12 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=61.6
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcc-----------cHhhHHHHHHHHhccCCCEEEEEeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLG-----------YETEAFAIYDVMGYVKPPIFTLCVGN 179 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G-----------~v~aGlAIyD~m~~i~~~V~Tv~~G~ 179 (257)
++.++...+.+.|..++ .+ . .+ |.|...|... .|-.+. .+..+..++..|...+.||.+.+-|.
T Consensus 26 l~~~~~~~l~~~l~~~~-~~-~-~v-vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE-DD-R-AV-VVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh-cc-C-cE-EEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 67778888888877665 22 2 22 4455555221 121111 12233456677788899999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCC-cEEeeecC
Q 025131 180 AWGEAALLLGAGAKGNRAALPS-STIMIKQP 209 (257)
Q Consensus 180 AaS~AslIlaaG~kgkR~alPn-S~iMIHqP 209 (257)
|.+.|..|++++ +.|++.++ ++|-+-..
T Consensus 102 a~GgG~~lal~~--D~rva~~~~a~f~~pe~ 130 (229)
T PRK06213 102 AIAKGAFLLLSA--DYRIGVHGPFKIGLNEV 130 (229)
T ss_pred eeHHHHHHHHhC--CeeeEecCCcEEECchh
Confidence 999999999999 47999998 88776433
No 109
>PRK08788 enoyl-CoA hydratase; Validated
Probab=84.58 E-value=5.3 Score=37.25 Aligned_cols=93 Identities=16% Similarity=0.038 Sum_probs=56.8
Q ss_pred cChhHHHHHHHHHHhchhc--CCCCceE-EEEcCC-CCCC-CCCCcccHh--------h-----HHHHHHHHh------c
Q 025131 112 FVPSVTELILAEFLYLQYE--DVEKPIY-LYINST-GTTK-GGEKLGYET--------E-----AFAIYDVMG------Y 167 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~--d~~k~I~-LyINSp-G~~~-~~~~~G~v~--------a-----GlAIyD~m~------~ 167 (257)
++.+...++.+.|..++.. +.+.+|. |.|-+. |... .|-.+..+. + ...+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 5677778888888777640 0123455 334444 3111 111111110 0 123344443 4
Q ss_pred cCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131 168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (257)
Q Consensus 168 i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI 206 (257)
.+.||...+-|.|.+.|.-|++++ +-|++.++++|-+
T Consensus 120 ~pkPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~ 156 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSH--HTIIAERGAKMGF 156 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEeeC
Confidence 678899999999999999999999 4699999987765
No 110
>PRK08139 enoyl-CoA hydratase; Validated
Probab=84.33 E-value=11 Score=34.38 Aligned_cols=96 Identities=9% Similarity=0.092 Sum_probs=62.7
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------h----hHHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------T----EAFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------~----aGlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++..++.+.|..++.+ ++|. |.|.+.|... .|-.+..+ . ....+++.|..++.||...+
T Consensus 35 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (266)
T PRK08139 35 LSEAMLAALQAALDAIAAD---PSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARV 111 (266)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5777888888887766542 3444 3334444221 12111111 0 01235667788899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
-|.|.+.|.-|++++ +-|++.++++|-+-....|
T Consensus 112 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G 145 (266)
T PRK08139 112 HGIATAAGCQLVASC--DLAVAADTARFAVPGVNIG 145 (266)
T ss_pred CceeeHHHHHHHHhC--CEEEEeCCCEEeCcccCcC
Confidence 999999999999999 5799999998876554433
No 111
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=84.27 E-value=9 Score=34.52 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=59.8
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT 174 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~T 174 (257)
++.+....+...|..++.+ ++|. +.|.+.|... .|-.+..+ .....++..|..++.||.+
T Consensus 30 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAAD---PAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIA 106 (260)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 5667777788777666542 3343 4445555321 11111100 1112355667788999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
.+-|.|.+.|.-|+++++ -|++.++++|-+-.
T Consensus 107 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe 138 (260)
T PRK07827 107 AIDGHVRAGGFGLVGACD--IVVAGPESTFALTE 138 (260)
T ss_pred EEcCeeecchhhHHHhCC--EEEEcCCCEEeCcc
Confidence 999999999999999994 68999888876633
No 112
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=83.90 E-value=5.1 Score=36.01 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=66.6
Q ss_pred ccChhHHHHHHHHHHhchhcCCCCceEEEEc-CCCCCC-CCCCcccH-------------hhHHHHHHHHhccCCCEEEE
Q 025131 111 SFVPSVTELILAEFLYLQYEDVEKPIYLYIN-STGTTK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN-SpG~~~-~~~~~G~v-------------~aGlAIyD~m~~i~~~V~Tv 175 (257)
.++.++...+.+.|..++.+ ++|.+-|= +.|-.. .|-.++.+ .....++..|..++.||...
T Consensus 28 al~~~~~~~l~~al~~~~~d---~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 104 (257)
T COG1024 28 ALNLEMLDELAEALDEAEAD---PDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAA 104 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEE
Confidence 46778888888888777653 34443332 333111 12111221 11223677888999999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
+-|.|.+.|.-|++++ +-|++.++++|-+....-|
T Consensus 105 v~G~a~GgG~eLal~~--D~ria~~~a~f~~pe~~iG 139 (257)
T COG1024 105 VNGYALGGGLELALAC--DIRIAAEDAKFGLPEVNLG 139 (257)
T ss_pred EcceEeechhhhhhcC--CeEEecCCcEecCcccccc
Confidence 9999999999999999 5799999999998776644
No 113
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=83.75 E-value=8.3 Score=39.62 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=68.7
Q ss_pred cccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHHH
Q 025131 110 MSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL 187 (257)
Q Consensus 110 g~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslI 187 (257)
+.++.+.+... ++++.|-.. -.-||-..+|+||..- .-|.-|-+..+-.+.+++.....|+.|+++|.+++.|.+.
T Consensus 380 g~l~~~~a~Ka-arfi~lc~~-~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKG-AHFIELCAQ-RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHH-HHHHHHHHh-cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 44665554444 334444332 2579999999999442 1233366777778888888889999999999999998887
Q ss_pred HccC--CCCCeeecCCcEEeeecCCc
Q 025131 188 LGAG--AKGNRAALPSSTIMIKQPIG 211 (257)
Q Consensus 188 laaG--~kgkR~alPnS~iMIHqP~~ 211 (257)
+++. ..+..++.|++.+-+=.|.+
T Consensus 458 M~g~~~~~d~~~awp~A~i~vmg~e~ 483 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIGVMGGAQ 483 (569)
T ss_pred hcCcCCCCCEEEECCCCeEEecCHHH
Confidence 7643 23456778888887665543
No 114
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=83.48 E-value=2.4 Score=40.43 Aligned_cols=105 Identities=25% Similarity=0.342 Sum_probs=71.9
Q ss_pred cchHhhhccCcEEEeCcccChhH--HHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHH---h
Q 025131 94 PDLASYLYKNRIVYLGMSFVPSV--TELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVM---G 166 (257)
Q Consensus 94 ~Di~s~Ll~~RIIfLgg~I~~~~--a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m---~ 166 (257)
-|..++|.++ +|++=-+.. |-++..+-..+ .-||-.+|+++|--. .-|.-| .+-||--.| -
T Consensus 118 ~dtk~~~~rN----FGm~~PeGyRKAlRlm~~AekF-----~lPiitfIDT~GAypG~~AEErG---Q~eAIA~nL~em~ 185 (317)
T COG0825 118 RDTKEKLKRN----FGMPRPEGYRKALRLMKLAEKF-----GLPIITFIDTPGAYPGIGAEERG---QSEAIARNLREMA 185 (317)
T ss_pred ccchhHHHhc----CCCCCchHHHHHHHHHHHHHHh-----CCCEEEEecCCCCCCCcchhhcc---cHHHHHHHHHHHh
Confidence 4666777765 355544322 34444432222 579999999999332 222223 344554443 3
Q ss_pred ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
..+.||.++++|.-.|-|++-++.|+ +.+|+.||.+.+=.|.+.
T Consensus 186 ~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ySVisPEG~ 229 (317)
T COG0825 186 RLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSVISPEGC 229 (317)
T ss_pred CCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhceeeecChhhh
Confidence 67889999999999999999999995 568999999999999865
No 115
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=83.31 E-value=10 Score=37.28 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=63.7
Q ss_pred cEEEeCcc-----cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHhh-------------------
Q 025131 104 RIVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE------------------- 157 (257)
Q Consensus 104 RIIfLgg~-----I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~a------------------- 157 (257)
.+|-|.-| ++.++...+...|..++.++ .|. +.|-+.|... .| |++.+
T Consensus 48 ~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~---~vrvVVl~G~GkaFcAG---gDl~~l~~~~~~~~~~~~~~~~~~ 121 (401)
T PLN02157 48 RTAILNRPPALNALTTHMGYRLQKLYKNWEEDP---NIGFVMMKGSGRAFCAG---GDIVSLYHLRKRGSPDAIREFFSS 121 (401)
T ss_pred EEEEECCCCccCCCCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCccCC---cCHHHHHhhccccchHHHHHHHHH
Confidence 34555555 67888888988888776533 343 3344444211 01 22211
Q ss_pred HHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 158 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 158 GlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
...++..|..++.||...+.|.|.+.|.-|.+++ +.|++.++++|-+-..
T Consensus 122 ~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~c--D~rvate~a~fa~PE~ 171 (401)
T PLN02157 122 LYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPG--TFRVATDRTIFATPET 171 (401)
T ss_pred HHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhC--CEEEEeCCCEEEChhh
Confidence 1112345777889999999999999999999999 4688888888765433
No 116
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=82.60 E-value=9.9 Score=37.03 Aligned_cols=96 Identities=10% Similarity=0.050 Sum_probs=63.9
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEE-cCCCC-CC-CCCCccc--------------H-hhHHHHHHHHhccCCCEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGT-TK-GGEKLGY--------------E-TEAFAIYDVMGYVKPPIF 173 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSpG~-~~-~~~~~G~--------------v-~aGlAIyD~m~~i~~~V~ 173 (257)
++.++...+...|..++.+ ++|.+.| -+.|. .. .|-.+.. . .....+++.|..++.||.
T Consensus 52 ls~~ml~eL~~al~~~~~D---~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI 128 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSD---RDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI 128 (360)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6788888888888877643 3344333 33331 11 1111111 1 112356677888899999
Q ss_pred EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
..+-|.|.+.|.-|.+++ +-|++.++++|-+-.+.-|
T Consensus 129 AAVnG~AiGGGleLALaC--DlrIAse~A~Fg~PE~rlG 165 (360)
T TIGR03200 129 CRVNGMRIGGGQEIGMAA--DFTIAQDLANFGQAGPKHG 165 (360)
T ss_pred EEECCEeeeHHHHHHHhC--CEEEEcCCCEEeCchhccC
Confidence 999999999999999999 4699999998887555433
No 117
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=82.38 E-value=11 Score=34.01 Aligned_cols=92 Identities=10% Similarity=0.017 Sum_probs=61.0
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh------------h-HHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET------------E-AFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~------------a-GlAIyD~m~~i~~~V~Tv~ 176 (257)
++.++...+...|..++ | +++. |.|.+.|... .|-.+..+. . ...++..|..++.||.+.+
T Consensus 30 l~~~~~~~l~~~l~~~~--d--~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav 105 (260)
T PRK07659 30 LDEPMLKELLQALKEVA--E--SSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI 105 (260)
T ss_pred CCHHHHHHHHHHHHHhc--C--CCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 67788888888887773 3 2344 4445555221 121111110 0 1224555667889999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP 209 (257)
-|.|.+.|.-|++++ +-|++.++++|-+...
T Consensus 106 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe~ 136 (260)
T PRK07659 106 HGPAAGLGLSIALTA--DYVIADISAKLAMNFI 136 (260)
T ss_pred cCceecHHHHHHHhC--CEEEEcCCCEEcCchh
Confidence 999999999999999 5799999998876554
No 118
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=81.34 E-value=10 Score=35.67 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=64.1
Q ss_pred EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHH-------HH---HhccCCCEEEEE
Q 025131 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIY-------DV---MGYVKPPIFTLC 176 (257)
Q Consensus 107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIy-------D~---m~~i~~~V~Tv~ 176 (257)
|++|.+...+++.+...+..-. + ..-|+-.+..|+| ..+.+|.... .. +..-..|..+++
T Consensus 131 f~gGSmg~~~geKi~r~~e~A~-~-~~lPlV~l~dSgG--------aRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv 200 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKAL-E-DNCPLIIFSASGG--------ARMQEALLSLMQMAKTSAALAKMSERGLPYISVL 200 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHHH-H-cCCCEEEEEcCCC--------cccccchhHHHhHHHHHHHHHHHHcCCCCEEEEE
Confidence 6688899888888877654433 2 2568999999999 5555554222 12 223357888999
Q ss_pred eeeehhHHHHHHc-cCCCCCeeecCCcEEeeecCC
Q 025131 177 VGNAWGEAALLLG-AGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 177 ~G~AaS~AslIla-aG~kgkR~alPnS~iMIHqP~ 210 (257)
.|-+++.++..++ .|+ -.+|-|+|.|.+--|.
T Consensus 201 ~gpt~GG~aas~a~~~D--~iia~p~A~ig~aGpr 233 (285)
T TIGR00515 201 TDPTTGGVSASFAMLGD--LNIAEPKALIGFAGPR 233 (285)
T ss_pred eCCcchHHHHHHHhCCC--EEEEECCeEEEcCCHH
Confidence 9999888776664 663 5788999988876553
No 119
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=81.05 E-value=15 Score=33.02 Aligned_cols=92 Identities=14% Similarity=0.044 Sum_probs=56.4
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh-------hHHHHHHHH-hccCCCEEEEEeeeeh
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET-------EAFAIYDVM-GYVKPPIFTLCVGNAW 181 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~-------aGlAIyD~m-~~i~~~V~Tv~~G~Aa 181 (257)
++.++...+.+.|..++.+ ++|. |.|.+.|... .|-.+..+. ..-.+...+ ...+.||...+-|.|.
T Consensus 27 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~ 103 (254)
T PRK08252 27 VNAAVAQGLAAALDELDAD---PDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYAL 103 (254)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEe
Confidence 5778888888888777643 2333 3444444211 111111110 000111111 3567899999999999
Q ss_pred hHHHHHHccCCCCCeeecCCcEEeeec
Q 025131 182 GEAALLLGAGAKGNRAALPSSTIMIKQ 208 (257)
Q Consensus 182 S~AslIlaaG~kgkR~alPnS~iMIHq 208 (257)
+.|.-|++++ +-|++.++++|-+-.
T Consensus 104 GgG~~lalac--D~~ia~~~a~f~~pe 128 (254)
T PRK08252 104 AGGFELALAC--DLIVAARDAKFGLPE 128 (254)
T ss_pred hHHHHHHHhC--CEEEEeCCCEEeCch
Confidence 9999999999 468999998887533
No 120
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=80.76 E-value=10 Score=34.25 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=59.4
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh--------h-H-H--H-H--HHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET--------E-A-F--A-I--YDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~--------a-G-l--A-I--yD~m~~i~~~V~Tv 175 (257)
++.++...+...|..++.++..+ -|.|-+.|... .|-.+..+. . . . . + +..+..++.||.+.
T Consensus 29 l~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa 106 (263)
T PRK07799 29 LSTEMLRIMVDAWDRVDNDPDIR--SCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAA 106 (263)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEE
Confidence 67788888888887776533222 24444545221 121111100 0 0 0 0 1 11245678899999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
+-|.|.+.|.-|++++ +-|++.++++|-+....
T Consensus 107 v~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~ 139 (263)
T PRK07799 107 VEGPAIAGGTEILQGT--DIRVAGESAKFGISEAK 139 (263)
T ss_pred ECCeEeccHHHHHHhC--CEEEecCCCEecCcccc
Confidence 9999999999999999 47999999988764443
No 121
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=79.93 E-value=25 Score=31.56 Aligned_cols=95 Identities=11% Similarity=0.116 Sum_probs=58.4
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH--------------hhHHHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE--------------TEAFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v--------------~aGlAIyD~m~~i~~~V~Tv~ 176 (257)
++.+....+...|..++.++.... -|.+.+.|.+. .|-.+... .....++..|..++.||...+
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~~-vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 101 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPGS-VLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAV 101 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCce-EEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 677778888888777764321111 23334434221 12111111 111235666888899999999
Q ss_pred eeeehhHHHHHHccCCCCCeeecC-CcEEeeecC
Q 025131 177 VGNAWGEAALLLGAGAKGNRAALP-SSTIMIKQP 209 (257)
Q Consensus 177 ~G~AaS~AslIlaaG~kgkR~alP-nS~iMIHqP 209 (257)
-|.|.+.|..|++++ +-|++.+ .++|.+-.-
T Consensus 102 ~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~ 133 (239)
T PLN02267 102 TGHASAAGFILALSH--DYVLMRKDRGVLYMSEV 133 (239)
T ss_pred CCcchHHHHHHHHHC--CEEEecCCCCeEecccc
Confidence 999999999999998 4688874 456655433
No 122
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=79.81 E-value=6.7 Score=37.12 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=71.5
Q ss_pred ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCC--------cccHhhH--HHHHHHHhccCCCEEEEEeeee
Q 025131 111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEK--------LGYETEA--FAIYDVMGYVKPPIFTLCVGNA 180 (257)
Q Consensus 111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~--------~G~v~aG--lAIyD~m~~i~~~V~Tv~~G~A 180 (257)
.++..++.++...|..++.++..+-|.|| -+.+.--.|-. +.++.++ +.-++.+..++.||...+-|.|
T Consensus 60 al~~~~m~eL~~A~~~~e~D~s~~viVlt-G~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~A 138 (290)
T KOG1680|consen 60 ALCRATMLELAEAFKDFESDDSVGVIVLT-GSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFA 138 (290)
T ss_pred cccHHHHHHHHHHHHHhhccCcccEEEEE-cCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeecee
Confidence 35677888999999888876665555555 22221112211 2444444 5567778889999999999999
Q ss_pred hhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 181 aS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
.+-|.-|.+.+| -|+|.|+|.|+.-++.-|
T Consensus 139 lgGG~ELalmCD--irva~~~Akfg~~~~~~G 168 (290)
T KOG1680|consen 139 LGGGLELALMCD--IRVAGEGAKFGFFEIRMG 168 (290)
T ss_pred eccchhhhhhcc--eEeccCCCeecccccccC
Confidence 999999999995 699999999998887644
No 123
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=79.54 E-value=16 Score=34.52 Aligned_cols=91 Identities=19% Similarity=0.236 Sum_probs=63.5
Q ss_pred EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHH-------HHH---HhccCCCEEEEE
Q 025131 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAI-------YDV---MGYVKPPIFTLC 176 (257)
Q Consensus 107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAI-------yD~---m~~i~~~V~Tv~ 176 (257)
|++|.++..+++.+...+.. ..+. .-|+-.+..|+| ..+.+|+.. +.. +.....|..+++
T Consensus 132 f~gGS~g~~~~eKi~r~~e~-A~~~-~lPlV~l~dsgG--------armqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv 201 (292)
T PRK05654 132 FMGGSMGSVVGEKIVRAVER-AIEE-KCPLVIFSASGG--------ARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVL 201 (292)
T ss_pred cccCCccHHHHHHHHHHHHH-HHHc-CCCEEEEEcCCC--------cchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEE
Confidence 66889999888888775543 3333 468888889999 666665432 222 233357888999
Q ss_pred eeeehhHHHHHHcc-CCCCCeeecCCcEEeeecC
Q 025131 177 VGNAWGEAALLLGA-GAKGNRAALPSSTIMIKQP 209 (257)
Q Consensus 177 ~G~AaS~AslIlaa-G~kgkR~alPnS~iMIHqP 209 (257)
.|-+++.++..++. | +-.+|-|+|.|.+--|
T Consensus 202 ~gpt~GG~aas~a~~~--D~iia~p~A~ig~aGp 233 (292)
T PRK05654 202 TDPTTGGVSASFAMLG--DIIIAEPKALIGFAGP 233 (292)
T ss_pred eCCCchHHHHHHHHcC--CEEEEecCcEEEecCH
Confidence 99998887766554 5 3578889998887655
No 124
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=79.13 E-value=13 Score=35.82 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=65.9
Q ss_pred cEEEeCcc-----cChhHHHHHHHHHHhchhcCCCCceEEE-EcCCCCCC-CCCCcccHh--------------hHHHHH
Q 025131 104 RIVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTTK-GGEKLGYET--------------EAFAIY 162 (257)
Q Consensus 104 RIIfLgg~-----I~~~~a~~iiaqLl~L~~~d~~k~I~Ly-INSpG~~~-~~~~~G~v~--------------aGlAIy 162 (257)
.+|.|..| ++.++...+...|..++.+ ++|.+. |.+.|... .|-.+..+. ....+.
T Consensus 22 ~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d---~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~ 98 (379)
T PLN02874 22 RVITLNRPRQLNVISLSVVSLLAEFLEQWEKD---DSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLC 98 (379)
T ss_pred EEEEECCCccccCCCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHH
Confidence 34556555 6778888888888777643 345533 34444221 111111110 011123
Q ss_pred HHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131 163 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR 212 (257)
Q Consensus 163 D~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~ 212 (257)
..|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|.+-...-|
T Consensus 99 ~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~iG 146 (379)
T PLN02874 99 YHIHTYKKTQVALVHGLVMGGGAGLMVPM--KFRVVTEKTVFATPEASVG 146 (379)
T ss_pred HHHHhCCCCEEEEecCeEEecHHHHHHhC--CeEEEeCCeEEeccccccC
Confidence 35667889999999999999999999999 4799999998876544433
No 125
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=77.91 E-value=4.1 Score=34.05 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=29.6
Q ss_pred hccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131 166 GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 206 (257)
Q Consensus 166 ~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI 206 (257)
+...-||.+++.|.++|.+=+|++++ ++.++.|.+.+..
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~a--d~I~~~p~s~vgs 41 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAA--DEIYANPSSSVGS 41 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTS--SEEEE-TT-EEE-
T ss_pred cccCCeEEEEECCcchhHHHHHHHcC--CEEEecCCCEEEE
Confidence 45667999999999999999999999 4679999998874
No 126
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=77.62 E-value=7.4 Score=35.81 Aligned_cols=87 Identities=21% Similarity=0.288 Sum_probs=56.5
Q ss_pred CcccChh----HHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHH----------HHHHhccCCCEEE
Q 025131 109 GMSFVPS----VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAI----------YDVMGYVKPPIFT 174 (257)
Q Consensus 109 gg~I~~~----~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAI----------yD~m~~i~~~V~T 174 (257)
.++|.-+ .+..+...+ ...++.||-+.|.+||+.+ |.-.|-+.| |+.-+.-..||..
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i----~~~~krpIv~lVD~~sQa~-----grreEllGi~~alAhla~a~a~AR~~GHpvI~ 110 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTI----RSGPKRPIVALVDVPSQAY-----GRREELLGINQALAHLAKAYALARLAGHPVIG 110 (234)
T ss_pred CCcccHHHHHHHHHHHHHHH----hcCCCCCEEEEEeCCcccc-----chHHHHhhHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 5555433 344444443 3457899999999999765 444444433 5555666789999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK 207 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIH 207 (257)
+++|.|.|-| ||.-+--.++-+++| -.|+|
T Consensus 111 Lv~G~A~SGa-FLA~GlqA~rl~AL~--ga~i~ 140 (234)
T PF06833_consen 111 LVYGKAMSGA-FLAHGLQANRLIALP--GAMIH 140 (234)
T ss_pred EEecccccHH-HHHHHHHhcchhcCC--CCeee
Confidence 9999999964 555443334567889 44555
No 127
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=75.50 E-value=20 Score=37.63 Aligned_cols=94 Identities=14% Similarity=0.060 Sum_probs=64.9
Q ss_pred cChhHHHHHHHHHHhchhcCCCCce-EEEEcCCCCCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPI-YLYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT 174 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I-~LyINSpG~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~T 174 (257)
++.++...+.+.|..++.++ +| -+.|-|.|... .|-.+..+ ..+..+++.|..++.||..
T Consensus 31 l~~~~~~eL~~al~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIA 107 (714)
T TIGR02437 31 FDRATLASLDQALDAIKAQS---SLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVA 107 (714)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57788888888888776533 33 34444554221 11111110 1234577888899999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.+-|.|.+.|.-|++++ +.|++.++++|-+-...
T Consensus 108 ai~G~alGGGleLalac--D~ria~~~a~fglPEv~ 141 (714)
T TIGR02437 108 AINGIALGGGCECVLAT--DFRIADDTAKIGLPETK 141 (714)
T ss_pred EECCeeecHHHHHHHhC--CEEEEeCCCEEecchhh
Confidence 99999999999999999 57999999988775543
No 128
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=74.89 E-value=19 Score=37.64 Aligned_cols=92 Identities=11% Similarity=0.147 Sum_probs=59.7
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEE--EcCCCCCC-CCCCcccH-------------hhHHHHHHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLY--INSTGTTK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~Ly--INSpG~~~-~~~~~G~v-------------~aGlAIyD~m~~i~~~V~Tv 175 (257)
++.++...+.+.|..++. ++++..- +...|... .|-.+..+ .....++..|..++.||.+.
T Consensus 26 l~~~~~~eL~~~l~~~~~---d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 102 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKR---DKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAA 102 (699)
T ss_pred CCHHHHHHHHHHHHHHhc---CCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 577778888888777764 2455533 23333221 11111111 12234677888999999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCC--cEEeeec
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPS--STIMIKQ 208 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPn--S~iMIHq 208 (257)
+-|.|.+.|.-|.+++ +.|++.++ ++|-+..
T Consensus 103 VnG~a~GgG~~LaLac--D~ria~~~~~a~fg~pe 135 (699)
T TIGR02440 103 IHGACLGGGLELALAC--HSRVCSDDDKTVLGLPE 135 (699)
T ss_pred ECCEeecHHHHHHHhC--CEEEEcCCCCcEEechh
Confidence 9999999999999998 57898877 4454433
No 129
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=74.77 E-value=17 Score=32.75 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=56.1
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh---h-HHH------HHHHHhccCCCEEEEEeee
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET---E-AFA------IYDVMGYVKPPIFTLCVGN 179 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~---a-GlA------IyD~m~~i~~~V~Tv~~G~ 179 (257)
++.++...+.+.|..++.+ +++. |.|.+.|... .|-.+..+. . ... .+..+...+.||.+.+-|.
T Consensus 27 l~~~~~~~l~~~l~~~~~d---~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~ 103 (254)
T PRK08259 27 VDGPTAAALADAFRAFDAD---DAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGY 103 (254)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCE
Confidence 5777888888888777643 3343 3334444221 111111110 0 000 0111224678999999999
Q ss_pred ehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131 180 AWGEAALLLGAGAKGNRAALPSSTIMIK 207 (257)
Q Consensus 180 AaS~AslIlaaG~kgkR~alPnS~iMIH 207 (257)
|.+.|.-|++++ +.|++.++++|-+-
T Consensus 104 a~GgG~~lalac--D~~ia~~~a~f~~p 129 (254)
T PRK08259 104 AVAGGLELALWC--DLRVAEEDAVFGVF 129 (254)
T ss_pred EEhHHHHHHHhC--CEEEecCCCEecCc
Confidence 999999999999 57999999988653
No 130
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=72.97 E-value=20 Score=36.60 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=36.5
Q ss_pred HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCC--cEEee
Q 025131 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIMI 206 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPn--S~iMI 206 (257)
+++.|+.++.||...+-|.|.+.|.-|.+++ +-|++.++ ++|-+
T Consensus 111 i~~~i~~~pkPvIAAVnG~a~GGG~~LALac--D~rvAs~~a~a~f~~ 156 (546)
T TIGR03222 111 IEDSSRHSGLKFLAAVNGTCAGGGYELALAC--DEIMLVDDRSSSVSL 156 (546)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEc
Confidence 5566778899999999999999999999999 46888886 45544
No 131
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=71.91 E-value=18 Score=36.97 Aligned_cols=44 Identities=16% Similarity=0.041 Sum_probs=36.9
Q ss_pred HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCC--cEEee
Q 025131 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIMI 206 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPn--S~iMI 206 (257)
+.+.|..++.||...+-|.|.+.|..|.+++ +.|++.++ ++|-+
T Consensus 115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALac--D~rIas~~~~a~fg~ 160 (550)
T PRK08184 115 IEDSSRHSGLKFIAAVNGTCAGGGYELALAC--DEIVLVDDRSSAVSL 160 (550)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEc
Confidence 4566778899999999999999999999999 46898887 56654
No 132
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.36 E-value=22 Score=37.19 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=62.6
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh---------------hHHHHHHHHhccCCCEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET---------------EAFAIYDVMGYVKPPIFT 174 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~---------------aGlAIyD~m~~i~~~V~T 174 (257)
++.++...+.+.|..++.+ +++. +.|.+.|... .|-.+.... ....+++.|..++.||..
T Consensus 31 l~~~~~~~L~~al~~~~~d---~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 107 (715)
T PRK11730 31 LDRATLASLGEALDALEAQ---SDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVA 107 (715)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 5777888888888776543 3443 4445555221 121111110 112356677888999999
Q ss_pred EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131 175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~ 210 (257)
.+-|.|.+.|.-|++++ +-|++.++++|-+-...
T Consensus 108 av~G~a~GgG~~LAlac--D~ria~~~a~f~~pe~~ 141 (715)
T PRK11730 108 AINGYALGGGCECVLAT--DYRVASPDARIGLPETK 141 (715)
T ss_pred EECCEeehHHHHHHHhC--CEEEEcCCCEEeCchhh
Confidence 99999999999999999 57999999988764433
No 133
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=67.89 E-value=41 Score=35.19 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=60.6
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEE-EEcCCC-CCC-CCCCcccH------h-------hHHHHHHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTG-TTK-GGEKLGYE------T-------EAFAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~L-yINSpG-~~~-~~~~~G~v------~-------aGlAIyD~m~~i~~~V~Tv 175 (257)
++.++..++...|..++. +++|.. .|-+.| ... .|-.+..+ . ....+++.|..++.||...
T Consensus 31 l~~~~~~~L~~~l~~~~~---d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 107 (708)
T PRK11154 31 LKAEFAEQVRAILKQLRE---DKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA 107 (708)
T ss_pred CCHHHHHHHHHHHHHHHh---CCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 567777888887777664 345653 344433 121 11111111 0 1233677888899999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCc--EEeeecC
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSS--TIMIKQP 209 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS--~iMIHqP 209 (257)
+-|.|.+.|.-|++++ +-|++.+++ +|-+...
T Consensus 108 V~G~a~GgG~~Lalac--D~ria~~~a~a~fg~pe~ 141 (708)
T PRK11154 108 IHGACLGGGLELALAC--HYRVCTDDPKTVLGLPEV 141 (708)
T ss_pred ECCeeechHHHHHHhC--CEEEEeCCCCceEeCccc
Confidence 9999999999999999 579999875 5554443
No 134
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=61.47 E-value=37 Score=34.35 Aligned_cols=92 Identities=18% Similarity=0.110 Sum_probs=63.0
Q ss_pred EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHH-------HHH-HHHh-ccCCCEEEEEe
Q 025131 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAF-------AIY-DVMG-YVKPPIFTLCV 177 (257)
Q Consensus 107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGl-------AIy-D~m~-~i~~~V~Tv~~ 177 (257)
|++|-+.....+.++..+ .+..+. .-|+-.++.|.| +.+.+|. .++ ...+ .-..|..+++.
T Consensus 93 ~~gGS~g~~~~~K~~r~~-e~A~~~-~lPlV~l~dSgG--------arm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~ 162 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIM-DLAMKM-GAPVVGLNDSGG--------ARIQEAVDALKGYGDIFYRNTIASGVVPQISAIM 162 (512)
T ss_pred ccccCCCHHHHHHHHHHH-HHHHHc-CCCEEEEecCCC--------CCccccchhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence 678888888888877644 344433 468988889988 4433332 122 2222 23368899999
Q ss_pred eeehhHHHHHHccCCCCCeeecCC-cEEeeecCC
Q 025131 178 GNAWGEAALLLGAGAKGNRAALPS-STIMIKQPI 210 (257)
Q Consensus 178 G~AaS~AslIlaaG~kgkR~alPn-S~iMIHqP~ 210 (257)
|-|++-++...+.++ ..+|.++ +++.+--|.
T Consensus 163 G~~~GG~a~~~al~D--~vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 163 GPCAGGAVYSPALTD--FIYMVDNTSQMFITGPQ 194 (512)
T ss_pred cCCCcHHHHHHHhcC--ceEEeccceEEEecChH
Confidence 999999999988884 6789996 567776553
No 135
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=59.00 E-value=32 Score=35.21 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=65.5
Q ss_pred eCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHH
Q 025131 108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA 185 (257)
Q Consensus 108 Lgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~As 185 (257)
++|.|+.+.+..- ++++.|... -.=||-+..|.||... +-|.-|-+--|--+.+++-..+.|..||++|-+++.|-
T Consensus 336 ~~G~l~~~sa~Ka-ArFI~~cd~-~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~ 413 (526)
T COG4799 336 LGGVLDIDSADKA-ARFIRLCDA-FNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAY 413 (526)
T ss_pred cccccchHHHHHH-HHHHHhhhc-cCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccccccee
Confidence 3677776654332 333344332 2579999999999653 23334667778889999999999999999999999887
Q ss_pred HHHccCCCCCe--eecCCcEEeeecC
Q 025131 186 LLLGAGAKGNR--AALPSSTIMIKQP 209 (257)
Q Consensus 186 lIlaaG~kgkR--~alPnS~iMIHqP 209 (257)
..+++..-+-+ ++-|+|++-+=.|
T Consensus 414 ~~M~~~~~~~~~~~AwP~a~iaVMG~ 439 (526)
T COG4799 414 YVMGGKALGPDFNYAWPTAEIAVMGP 439 (526)
T ss_pred eeecCccCCCceeEecCcceeeecCH
Confidence 66555433323 2345555544433
No 136
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=58.04 E-value=67 Score=32.91 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=65.2
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCC-C-C--CCCC-c----cc--HhhH----HHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-T-K--GGEK-L----GY--ETEA----FAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~-~-~--~~~~-~----G~--v~aG----lAIyD~m~~i~~~V~Tv~ 176 (257)
++.++...+...+..++.+ +.+|.+.|=+.++ . . ++.+ . +. ..+. -.+++.|..++.||...+
T Consensus 295 l~~~~~~~L~~a~~~~~~~--d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTN--ELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CCHHHHHHHHHHHHHHhhC--CCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 6677888888888777643 3567766554432 1 1 1111 0 10 1111 126678888899999999
Q ss_pred -eeeehhHH-HHHHccCCCCCeee-------cCCcEEeeecCCcc
Q 025131 177 -VGNAWGEA-ALLLGAGAKGNRAA-------LPSSTIMIKQPIGR 212 (257)
Q Consensus 177 -~G~AaS~A-slIlaaG~kgkR~a-------lPnS~iMIHqP~~~ 212 (257)
-|.|.+.| .-|.+++ +-|++ .++++|.+-...-|
T Consensus 373 ~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~~e~~lG 415 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAA--DRSYMLAFPDNNDPEPAITLSELNFG 415 (546)
T ss_pred CCCeEeHHHHHHHHHhC--ceeeecCCCCCCCCCCEEeCCccccc
Confidence 79999999 8888888 46999 79999887666544
No 137
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=57.35 E-value=55 Score=34.57 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=62.2
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceE--EEEcCCCCCC-CCCCcccH-------------hhHHHHHHHHhccCCCEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIY--LYINSTGTTK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL 175 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~--LyINSpG~~~-~~~~~G~v-------------~aGlAIyD~m~~i~~~V~Tv 175 (257)
++.++...+.+.|..++. +.+|. |.+.+.|... .|-.+..+ ..+..+++.|..++.||...
T Consensus 38 l~~~~~~~L~~al~~~~~---d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 114 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWT---NEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAA 114 (737)
T ss_pred CCHHHHHHHHHHHHHHhh---CCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 567778888888877664 34565 3445555332 22111111 12345777888899999999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCCc--EEeeec
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPSS--TIMIKQ 208 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPnS--~iMIHq 208 (257)
+-|.|.+.|.-|.+++ +.|++.+++ +|-+..
T Consensus 115 v~G~a~GgG~eLALac--D~ria~~~a~a~fglpE 147 (737)
T TIGR02441 115 ISGSCLGGGLELALAC--HYRIATKDRKTLLGLPE 147 (737)
T ss_pred ECCEeecHHHHHHHhC--CEEEEcCCCCCeEecch
Confidence 9999999999999999 579999885 555443
No 138
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=56.15 E-value=76 Score=30.22 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=61.5
Q ss_pred EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHH-----------HHHHHHhccCCCEEEE
Q 025131 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAF-----------AIYDVMGYVKPPIFTL 175 (257)
Q Consensus 107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGl-----------AIyD~m~~i~~~V~Tv 175 (257)
|++|-+...+.+.++..+. +..+. .-|+-+...|.| +.+.+|+ +++...+.-..|..++
T Consensus 144 f~gGSmG~v~geKi~ra~e-~A~~~-rlPlV~l~~SGG--------ARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isv 213 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIE-YATNE-SLPLIIVCASGG--------ARMQEGSLSLMQMAKISSALYDYQSNKKLFYISI 213 (296)
T ss_pred ccccCcCHHHHHHHHHHHH-HHHHc-CCCEEEEECCCC--------ccccccchhhhhhHHHHHHHHHHHHcCCCCEEEE
Confidence 6688888888888877554 33333 468999999988 5555544 1222222344688888
Q ss_pred EeeeehhHHHHHHcc-CCCCCeeecCCcEEeeecCC
Q 025131 176 CVGNAWGEAALLLGA-GAKGNRAALPSSTIMIKQPI 210 (257)
Q Consensus 176 ~~G~AaS~AslIlaa-G~kgkR~alPnS~iMIHqP~ 210 (257)
..|-+++-++..++. |+ -.++-|+|.+-+--|.
T Consensus 214 l~gPt~GG~aas~a~l~D--iiiae~~A~IgfAGPr 247 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGD--IIIAEPNAYIAFAGKR 247 (296)
T ss_pred EcCCCchHHHHHHHHccc--EEEEeCCeEEEeeCHH
Confidence 888877777766554 85 4678889988876664
No 139
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=54.78 E-value=78 Score=32.68 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=61.7
Q ss_pred EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CC-CCcccHhhHHHHHHH-Hhc--cCCCEEEEEeeeeh
Q 025131 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GG-EKLGYETEAFAIYDV-MGY--VKPPIFTLCVGNAW 181 (257)
Q Consensus 107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~-~~~G~v~aGlAIyD~-m~~--i~~~V~Tv~~G~Aa 181 (257)
+++|-+.+..++.++..+ .+..+. .-||-.++.|+|.-- .. +.++.....-.|+.. -+. ...|..++++|-|+
T Consensus 140 v~GGs~g~~~~~Ki~r~~-elA~~~-~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~ 217 (569)
T PLN02820 140 VKGGTYYPITVKKHLRAQ-EIAAQC-RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCT 217 (569)
T ss_pred ccCCCCCHHHHHHHHHHH-HHHHHc-CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 457778887877776644 444333 579999999999321 11 111111111124443 332 34689999999999
Q ss_pred hHHHHHHccCCCCCeeec-CCcEEeeecC
Q 025131 182 GEAALLLGAGAKGNRAAL-PSSTIMIKQP 209 (257)
Q Consensus 182 S~AslIlaaG~kgkR~al-PnS~iMIHqP 209 (257)
+.++++.+..+ ..++. +++++.+--|
T Consensus 218 gGgAy~~a~~D--~vim~~~~a~i~~aGP 244 (569)
T PLN02820 218 AGGAYVPAMAD--ESVIVKGNGTIFLAGP 244 (569)
T ss_pred hHHHHHHHhCC--ceEEecCCcEEEecCH
Confidence 99888877663 45665 5788888666
No 140
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=53.96 E-value=65 Score=24.39 Aligned_cols=77 Identities=14% Similarity=0.036 Sum_probs=48.0
Q ss_pred cEEEeCcccChhHHHHHHHHHHhchhcCCCCceEE------EEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEe
Q 025131 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL------YINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 177 (257)
Q Consensus 104 RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~L------yINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~ 177 (257)
-++.+.|+++...++.+..++..+-...+.+.+-| ||+|.| +..=..++..++. ..+..+..
T Consensus 10 ~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssg----------i~~L~~~~~~~~~--~g~~l~l~ 77 (106)
T TIGR02886 10 LIVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSG----------LGVILGRYKKIKN--EGGEVIVC 77 (106)
T ss_pred EEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchH----------HHHHHHHHHHHHH--cCCEEEEE
Confidence 36788999999999999999866432223344555 555555 2222234444443 34556677
Q ss_pred eeehhHHHHHHccCC
Q 025131 178 GNAWGEAALLLGAGA 192 (257)
Q Consensus 178 G~AaS~AslIlaaG~ 192 (257)
|.-....-++-.+|-
T Consensus 78 ~~~~~v~~~l~~~gl 92 (106)
T TIGR02886 78 NVSPAVKRLFELSGL 92 (106)
T ss_pred eCCHHHHHHHHHhCC
Confidence 777777777766663
No 141
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=52.11 E-value=38 Score=25.88 Aligned_cols=82 Identities=15% Similarity=0.009 Sum_probs=47.4
Q ss_pred cEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC-CCEEEEEeeeehh
Q 025131 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK-PPIFTLCVGNAWG 182 (257)
Q Consensus 104 RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~-~~V~Tv~~G~AaS 182 (257)
-++.+.|+++...++.+..+++..-.+...+ .|-|+-.|... =|.+..-++.+..+..+ ..+..+..|.-..
T Consensus 12 ~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~--~vvlDls~v~~-----iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~ 84 (109)
T cd07041 12 LVLPLIGDLDDERAEQLQERLLEAISRRRAR--GVIIDLTGVPV-----IDSAVARHLLRLARALRLLGARTILTGIRPE 84 (109)
T ss_pred EEEeeeeeECHHHHHHHHHHHHHHHHHcCCC--EEEEECCCCch-----hcHHHHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3567899999999999988876432222223 45555444211 01112223334444332 3466677787777
Q ss_pred HHHHHHccCC
Q 025131 183 EAALLLGAGA 192 (257)
Q Consensus 183 ~AslIlaaG~ 192 (257)
..-++-.+|-
T Consensus 85 v~~~l~~~gl 94 (109)
T cd07041 85 VAQTLVELGI 94 (109)
T ss_pred HHHHHHHhCC
Confidence 7777777773
No 142
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.00 E-value=73 Score=25.83 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=39.1
Q ss_pred CcEEEeCcccChhH--HHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHH--HHHHHhccCCCEEEEEee
Q 025131 103 NRIVYLGMSFVPSV--TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA--IYDVMGYVKPPIFTLCVG 178 (257)
Q Consensus 103 ~RIIfLgg~I~~~~--a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlA--IyD~m~~i~~~V~Tv~~G 178 (257)
+|++++|+.|..-. ...+...| ..+.+..++.+.=-+-+ |.....+. +...+...++++.+++.|
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~l---~~~~~~~~~~v~n~g~~--------G~t~~~~~~~~~~~~~~~~~d~v~l~~G 70 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETYL---AARYPELKLTFRNLGWS--------GDTVSDLAARRDRDVLPAKPDVVSIMFG 70 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHHH---HHhCCCCCcEEEEcccC--------ccchhhhhhhhhcccccCCCCEEEEEee
Confidence 68999999998744 33333333 33334445666544555 66555442 223334456789999887
Q ss_pred ee
Q 025131 179 NA 180 (257)
Q Consensus 179 ~A 180 (257)
.-
T Consensus 71 ~N 72 (191)
T cd01834 71 IN 72 (191)
T ss_pred cc
Confidence 53
No 143
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=41.44 E-value=1.4e+02 Score=30.58 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=59.8
Q ss_pred cChhHHHHHHHHHHhchhcCCCCceEEEEc-CCCC-C--CCCC--Cc--cc---HhhH----HHHHHHHhccCCCEEEEE
Q 025131 112 FVPSVTELILAEFLYLQYEDVEKPIYLYIN-STGT-T--KGGE--KL--GY---ETEA----FAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN-SpG~-~--~~~~--~~--G~---v~aG----lAIyD~m~~i~~~V~Tv~ 176 (257)
++.++...+.+.|..++.+ +.+|...|= +.|. . .++. .. .+ ..+. ..++..|...+.||...+
T Consensus 299 l~~~~~~eL~~al~~~~~~--d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 299 WPLQMARELDDAILHLRTN--ELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred CCHHHHHHHHHHHHHHHhc--CCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5677777777777666532 245664444 3341 1 1111 00 00 0111 124566777788999999
Q ss_pred e-eeehhHH-HHHHccCCCCCeeec-------CCcEEeeecCCcc
Q 025131 177 V-GNAWGEA-ALLLGAGAKGNRAAL-------PSSTIMIKQPIGR 212 (257)
Q Consensus 177 ~-G~AaS~A-slIlaaG~kgkR~al-------PnS~iMIHqP~~~ 212 (257)
- |.|.+.| .-|.+++ +-|++. ++++|-+-...-|
T Consensus 377 ~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~pe~~~G 419 (550)
T PRK08184 377 EPGSCFAGTLAELALAA--DRSYMLALPDDNDPAPAITLSALNFG 419 (550)
T ss_pred CCCceehhHHHHHHHHC--ChhhhcCCCCCCCCCCEEECcccccc
Confidence 6 9999999 7787888 468998 8888877655433
No 144
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=38.60 E-value=56 Score=32.72 Aligned_cols=92 Identities=21% Similarity=0.244 Sum_probs=61.9
Q ss_pred EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcc--cHhhHHH-------HHHHHh--ccCCCEEEE
Q 025131 107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLG--YETEAFA-------IYDVMG--YVKPPIFTL 175 (257)
Q Consensus 107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G--~v~aGlA-------IyD~m~--~i~~~V~Tv 175 (257)
|++|.+.+...+.+...+ .+..+. .-|+..+++|.| + .+.+|+. |+..+. +-..|+.++
T Consensus 68 ~~gGs~g~~~~~Ki~ra~-~~A~~~-~~P~v~l~dsgG--------a~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~v 137 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAI-ELALEN-GLPLVYLVDSGG--------AFLRMQEGVESLMGMGRIFRAIARLSGGIPQISV 137 (493)
T ss_dssp SGGGTBSHHHHHHHHHHH-HHHHHH-TEEEEEEEEESS--------BCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEE
T ss_pred eecCCCCcccceeeehHH-HHHHHc-CCCcEEeccccc--------cccccchhhhhhhhhHHHHHHHHHHhcCCCeEEE
Confidence 557778887777766644 444433 468888888999 5 3444432 222222 125689999
Q ss_pred EeeeehhHHHHHHccCCCCCeeecCC-cEEeeecCC
Q 025131 176 CVGNAWGEAALLLGAGAKGNRAALPS-STIMIKQPI 210 (257)
Q Consensus 176 ~~G~AaS~AslIlaaG~kgkR~alPn-S~iMIHqP~ 210 (257)
+.|-|.+.++.+.+.++ ..++.+. +.+.+.-|.
T Consensus 138 v~G~~~Gg~A~~~~~~d--~~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 138 VTGPCTGGGAYLAALSD--FVIMVKGTARIFLAGPR 171 (493)
T ss_dssp EESEEEGGGGHHHHHSS--EEEEETTTCEEESSTHH
T ss_pred EccccccchhhcccccC--ccccCccceEEEecccc
Confidence 99999998888888874 5678886 999887664
No 145
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=36.58 E-value=1.2e+02 Score=22.95 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=25.8
Q ss_pred cEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCC
Q 025131 104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTG 144 (257)
Q Consensus 104 RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG 144 (257)
.++.+.|+++...++.+-.++..+-.+.+.+ .+-|+..|
T Consensus 10 ~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~--~vilDls~ 48 (100)
T cd06844 10 WVVRLEGELDHHSVEQFKEELLHNITNVAGK--TIVIDISA 48 (100)
T ss_pred EEEEEEEEecHhhHHHHHHHHHHHHHhCCCC--EEEEECCC
Confidence 4678899999999999999886433222223 45554444
No 146
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=33.74 E-value=1.8e+02 Score=24.12 Aligned_cols=74 Identities=23% Similarity=0.467 Sum_probs=42.7
Q ss_pred hccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeee
Q 025131 100 LYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGN 179 (257)
Q Consensus 100 Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~ 179 (257)
+++++..-+.+.=.-...-+++..+|.|+.. +.+++|||+.=--.-.+.+|. +|+....-..=|.-||..+
T Consensus 43 ilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as---~slflYVN~sFAPsPDq~v~~------Ly~cf~~d~~Lvl~Yc~s~ 113 (116)
T KOG3439|consen 43 ILKKSKFKINPTQTFAKVILFLKKFLKLQAS---DSLFLYVNNSFAPSPDQIVGN------LYECFGTDGKLVLNYCISV 113 (116)
T ss_pred ceecceEEeCcchhhHHHHHHHHHHhCCccc---CeEEEEEcCccCCCchhHHHH------HHHhcCCCCEEEEEEeeec
Confidence 6677766555544445567778888888753 579999996431111222243 4444443333345577777
Q ss_pred ehh
Q 025131 180 AWG 182 (257)
Q Consensus 180 AaS 182 (257)
|++
T Consensus 114 A~G 116 (116)
T KOG3439|consen 114 AWG 116 (116)
T ss_pred ccC
Confidence 764
No 147
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=33.02 E-value=1.2e+02 Score=23.74 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=30.8
Q ss_pred hccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcC---CCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEE
Q 025131 100 LYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINS---TGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC 176 (257)
Q Consensus 100 Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINS---pG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~ 176 (257)
.++++..-+...=.-+..-.++...|.++ +.+.+++|||+ |. --|.+|+.+..++ .-..=|.-||
T Consensus 14 ilk~~k~kI~~~~~f~~vi~fLrk~Lk~~---~~~slFlYin~sFaPs---pDe~vg~L~~~f~------~~~~Liv~Ys 81 (87)
T PF04110_consen 14 ILKQKKFKISASQTFATVIAFLRKKLKLK---PSDSLFLYINNSFAPS---PDETVGDLYRCFG------TNGELIVSYS 81 (87)
T ss_dssp --S--EEEEETTSBTHHHHHHHHHHCT-------SS-EEEEEEEE------TTSBHHHHHHHH-------BTTBEEEEEE
T ss_pred cccCcEEEECCCCchHHHHHHHHHHhCCc---cCCeEEEEEcCccCCC---chhHHHHHHHHhC------CCCEEEEEEe
Confidence 34555555554433344455555555443 35789999996 33 1233355544444 2223355677
Q ss_pred eeeehh
Q 025131 177 VGNAWG 182 (257)
Q Consensus 177 ~G~AaS 182 (257)
...|++
T Consensus 82 ~t~A~G 87 (87)
T PF04110_consen 82 KTPAWG 87 (87)
T ss_dssp SSS---
T ss_pred cccccC
Confidence 777764
No 148
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=32.96 E-value=1.1e+02 Score=28.47 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=33.8
Q ss_pred HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEe
Q 025131 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIM 205 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iM 205 (257)
+.+.||.++.||..-+-|.|+-+|+-|.++++ --++..+|.|.
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF~ 159 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKFS 159 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEeee--EEEEecCcccc
Confidence 45677888999999999999999998888774 34565666554
No 149
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.72 E-value=1.2e+02 Score=25.09 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=15.1
Q ss_pred HHHHHhccCCCEEEEEeeee
Q 025131 161 IYDVMGYVKPPIFTLCVGNA 180 (257)
Q Consensus 161 IyD~m~~i~~~V~Tv~~G~A 180 (257)
+...+...++++..+..|.-
T Consensus 49 ~~~~~~~~~pd~vii~~G~N 68 (177)
T cd01844 49 VAELLRDVPADLYIIDCGPN 68 (177)
T ss_pred HHHHHHhcCCCEEEEEeccC
Confidence 55666777888888888865
No 150
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.20 E-value=2.4e+02 Score=23.86 Aligned_cols=75 Identities=25% Similarity=0.177 Sum_probs=49.4
Q ss_pred CcchHhhhcc------CcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHh
Q 025131 93 PPDLASYLYK------NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG 166 (257)
Q Consensus 93 ~~Di~s~Ll~------~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~ 166 (257)
..|+...|++ .|+.++|+. +++++.+.+.|. ...| .+.+.=..+|. -+..+--+|.+.|+
T Consensus 33 g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~---~~yP--~l~ivg~~~g~-------f~~~~~~~i~~~I~ 98 (172)
T PF03808_consen 33 GSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLR---RRYP--GLRIVGYHHGY-------FDEEEEEAIINRIN 98 (172)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHH---HHCC--CeEEEEecCCC-------CChhhHHHHHHHHH
Confidence 3577666665 477777774 566777776653 3333 45554333331 14567788999999
Q ss_pred ccCCCEEEEEeeeeh
Q 025131 167 YVKPPIFTLCVGNAW 181 (257)
Q Consensus 167 ~i~~~V~Tv~~G~Aa 181 (257)
..+++|.-+++|.=-
T Consensus 99 ~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 99 ASGPDIVFVGLGAPK 113 (172)
T ss_pred HcCCCEEEEECCCCH
Confidence 999999999988543
No 151
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=29.78 E-value=27 Score=33.54 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=29.9
Q ss_pred hhHHHHHHHHhccCCCEEEEEe-------e----eehhHHHHHHccCCCCCeeecCCc
Q 025131 156 TEAFAIYDVMGYVKPPIFTLCV-------G----NAWGEAALLLGAGAKGNRAALPSS 202 (257)
Q Consensus 156 ~aGlAIyD~m~~i~~~V~Tv~~-------G----~AaS~AslIlaaG~kgkR~alPnS 202 (257)
.++++|||+.|.+...+..-.+ | +...+.++|||+|. ++|+--+-+
T Consensus 123 ~a~ltiydm~k~~~~~~~i~~~~l~~k~gg~s~~~~~~i~~IILAGGk-SsRMG~dKa 179 (346)
T PRK14500 123 VAALTIYDMCKSISPHIIIKETRLIEKSGGKADLSQTPLYGLVLTGGK-SRRMGKDKA 179 (346)
T ss_pred HHHHHHHHHHhccCCCcEEeeEEEEEecCCcCCCCCCCceEEEEeccc-cccCCCCcc
Confidence 4568999999998865433222 1 23366788888885 788754333
No 152
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=28.72 E-value=97 Score=25.84 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=33.5
Q ss_pred cCcEEEeCcccChhH--HHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHh
Q 025131 102 KNRIVYLGMSFVPSV--TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG 166 (257)
Q Consensus 102 ~~RIIfLgg~I~~~~--a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~ 166 (257)
...+-|.-=||.+.. ....+.+|+.+=..- .++-.|..||-.|. |--+-++.|||.|+
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~------GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGR------GRTTTFMVMYDLIR 149 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSS------HHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCC------CHHHHHHHHHHHhC
Confidence 566777777776644 233333343221111 34678888888743 77999999999985
No 153
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=28.16 E-value=2.4e+02 Score=22.01 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=47.1
Q ss_pred EEEeCcccChhHHHHHHHHHH-hchhcCCCCceEEEEcCCCCCCCCCCcccH--hhHHHHHHHHhccCCCEEEEEeeeeh
Q 025131 105 IVYLGMSFVPSVTELILAEFL-YLQYEDVEKPIYLYINSTGTTKGGEKLGYE--TEAFAIYDVMGYVKPPIFTLCVGNAW 181 (257)
Q Consensus 105 IIfLgg~I~~~~a~~iiaqLl-~L~~~d~~k~I~LyINSpG~~~~~~~~G~v--~aGlAIyD~m~~i~~~V~Tv~~G~Aa 181 (257)
++.+.|+||...+..+-+.+. .+... +.-++.|+..|-++ +++. -.=...+...+... +..+..|.=-
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~---~~~~ivIDls~v~~----~dS~gl~~L~~~~~~~~~~g--~~~~l~~i~p 86 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAAS---GARGLVIDLSGVDF----MDSAGLGVLVALLKSARLRG--VELVLVGIQP 86 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcC---CCcEEEEECCCCce----echHHHHHHHHHHHHHHhcC--CeEEEEeCCH
Confidence 678999999999999999987 44332 23337888777322 1111 01123334444433 5566667766
Q ss_pred hHHHHHHccC
Q 025131 182 GEAALLLGAG 191 (257)
Q Consensus 182 S~AslIlaaG 191 (257)
..+-.+-..|
T Consensus 87 ~v~~~~~~~g 96 (117)
T COG1366 87 EVARTLELTG 96 (117)
T ss_pred HHHHHHHHhC
Confidence 7776666666
No 154
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=27.89 E-value=2e+02 Score=25.92 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=65.7
Q ss_pred CCcchHhhhccCcEEEeCc--ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC
Q 025131 92 PPPDLASYLYKNRIVYLGM--SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK 169 (257)
Q Consensus 92 ~~~Di~s~Ll~~RIIfLgg--~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~ 169 (257)
.+..+|.. ++.++++.+ ++.+.....+...++.+-.+...+.|...=-.+........+|..++- ..-+.++..
T Consensus 67 ~p~riY~~--~~~~vv~~~~~~i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~~~~~v~~~at~~-~~~~~l~~~- 142 (238)
T TIGR00161 67 PPVRIYEG--KDGIVLFLSDFIIPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVREKSQPVFGAANSQ-ELIERLKDL- 142 (238)
T ss_pred CceEEEec--CCcEEEEEecccCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCCCCCcEEEEECCH-HHHHHHHHh-
Confidence 45666643 344355544 456777788888888765554455554431111111111222322211 112223321
Q ss_pred CCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCc------------------ccccCHHHHHHHHHHHHHHH
Q 025131 170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIG------------------RIEGQATDVEIARKEMKNVK 231 (257)
Q Consensus 170 ~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~------------------~~~GqAsDi~i~a~el~~~k 231 (257)
.+. .-.|...+++++|+.-| .+.-+|...+|-.-+.. +..=+.++++.+|+++++.-
T Consensus 143 ~~~--~~~g~i~G~~g~ll~~a---~~~gi~~i~Ll~et~~~~PDP~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~~~ 217 (238)
T TIGR00161 143 IEI--FPFGNLNGISGTLLTRC---AVNDIPAICLLAETLGPYPDPRAAASLVEVLNKMLNTNVDPEPLLKEAEAIESRL 217 (238)
T ss_pred cCc--CCCCEEechhHHHHHHH---HHcCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHH
Confidence 111 22356677777777655 23457777777543221 11125667777777776554
Q ss_pred HHHH
Q 025131 232 AELV 235 (257)
Q Consensus 232 ~~l~ 235 (257)
+.+.
T Consensus 218 ~el~ 221 (238)
T TIGR00161 218 KKLA 221 (238)
T ss_pred HHHH
Confidence 4444
No 155
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=27.05 E-value=2.7e+02 Score=20.77 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=43.0
Q ss_pred EEEeCcccChhHHHHHHHHHHhchhcCCCCceEE------EEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEee
Q 025131 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL------YINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 178 (257)
Q Consensus 105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~L------yINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G 178 (257)
+|.+.|+++...+..+-+.|..+......+.+.+ ||+|.| ...=..++..++. ..+..+..|
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssg----------l~~L~~~~~~~~~--~~~~~~l~~ 82 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSG----------LGVLLGRYKQVRR--VGGQLVLVS 82 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEcccc----------HHHHHHHHHHHHh--cCCEEEEEe
Confidence 5668899998888888888876554222333443 334433 1111222333333 345667777
Q ss_pred eehhHHHHHHccC
Q 025131 179 NAWGEAALLLGAG 191 (257)
Q Consensus 179 ~AaS~AslIlaaG 191 (257)
.-.....++-..|
T Consensus 83 ~~~~~~~~l~~~~ 95 (108)
T TIGR00377 83 VSPRVARLLDITG 95 (108)
T ss_pred CCHHHHHHHHHhC
Confidence 7777777666665
No 156
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.93 E-value=1.4e+02 Score=24.20 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=13.4
Q ss_pred HHhccCCCEEEEEeeee
Q 025131 164 VMGYVKPPIFTLCVGNA 180 (257)
Q Consensus 164 ~m~~i~~~V~Tv~~G~A 180 (257)
.+...++++.+++.|.-
T Consensus 51 ~l~~~~pd~Vii~~G~N 67 (189)
T cd01825 51 QLAALPPDLVILSYGTN 67 (189)
T ss_pred HHhhCCCCEEEEECCCc
Confidence 45678889999999865
No 157
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=23.81 E-value=1.6e+02 Score=21.91 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHH----HHHHhcCCCHHHHHHHHhhcCC
Q 025131 224 RKEMKNVKAELV----LYTEKSPEDHGVVSDLKKAQLI 257 (257)
Q Consensus 224 a~el~~~k~~l~----iY~erTg~~~evI~~l~r~~~~ 257 (257)
++|+..+-+.+- ..++.+|.+.+++.+|+.++-|
T Consensus 33 ~ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~~~~Gki 70 (75)
T TIGR02675 33 GEEINSLLEALPGALQALAKAMGVTRGELRKMLSDGKL 70 (75)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHHCCCC
Confidence 344444444433 7889999999999999987754
No 158
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.84 E-value=3.8e+02 Score=23.23 Aligned_cols=75 Identities=20% Similarity=0.092 Sum_probs=46.8
Q ss_pred cchHhhhcc------CcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhc
Q 025131 94 PDLASYLYK------NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY 167 (257)
Q Consensus 94 ~Di~s~Ll~------~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~ 167 (257)
.||...|++ -|+.|+|+ .+++++...+.|. ...|.-.|.-+ ++. -+-.+--+|.+.|+.
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~--~~~v~~~~~~~l~---~~yP~l~i~g~--~g~--------f~~~~~~~i~~~I~~ 98 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGG--KPDVLQQLKVKLI---KEYPKLKIVGA--FGP--------LEPEERKAALAKIAR 98 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECC--CHHHHHHHHHHHH---HHCCCCEEEEE--CCC--------CChHHHHHHHHHHHH
Confidence 577776653 26666665 4556666666653 23344445433 222 112344679999999
Q ss_pred cCCCEEEEEeeeehhH
Q 025131 168 VKPPIFTLCVGNAWGE 183 (257)
Q Consensus 168 i~~~V~Tv~~G~AaS~ 183 (257)
.++++.-+++|.=--.
T Consensus 99 s~~dil~VglG~PkQE 114 (177)
T TIGR00696 99 SGAGIVFVGLGCPKQE 114 (177)
T ss_pred cCCCEEEEEcCCcHhH
Confidence 9999999999965444
No 159
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.45 E-value=3e+02 Score=22.62 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=32.2
Q ss_pred cEEEeCcccChhHH--------HHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCccc-HhhHHHHHHHHhccCCCEEE
Q 025131 104 RIVYLGMSFVPSVT--------ELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY-ETEAFAIYDVMGYVKPPIFT 174 (257)
Q Consensus 104 RIIfLgg~I~~~~a--------~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~-v~aGlAIyD~m~~i~~~V~T 174 (257)
||+++|+-|..-.. ...+++.+ +. ....++.++-.+-+ |. ..+.+.-.+.+...++++.+
T Consensus 4 ~i~~~GDSit~G~g~~~~~~~~~~~l~~~l--~~-~~~~~~~~~n~g~~--------G~t~~~~~~~l~~~~~~~pd~Vi 72 (191)
T cd01836 4 RLLVLGDSTAAGVGVETQDQALAGQLARGL--AA-ITGRGVRWRLFAKT--------GATSADLLRQLAPLPETRFDVAV 72 (191)
T ss_pred EEEEEeccccccccccchhccHHHHHHHHH--HH-hhCCceEEEEEecC--------CcCHHHHHHHHHhcccCCCCEEE
Confidence 67788777754321 11122222 11 12235665544444 44 33334444443455778888
Q ss_pred EEeee
Q 025131 175 LCVGN 179 (257)
Q Consensus 175 v~~G~ 179 (257)
+.+|.
T Consensus 73 i~~G~ 77 (191)
T cd01836 73 ISIGV 77 (191)
T ss_pred EEecc
Confidence 87665
No 160
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.34 E-value=4.8e+02 Score=22.05 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=44.2
Q ss_pred cchHhhhcc------CcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhc
Q 025131 94 PDLASYLYK------NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY 167 (257)
Q Consensus 94 ~Di~s~Ll~------~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~ 167 (257)
.|+...|++ .|+.++|+ ++++.+.+...| ....+.-.|.-+-+-+- +...+ ..|.+.++.
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~--~~~~~~~~~~~l---~~~yp~l~i~g~~~g~~--------~~~~~-~~i~~~I~~ 97 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGA--KPEVLEKAAERL---RARYPGLKIVGYHHGYF--------GPEEE-EEIIERINA 97 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECC--CHHHHHHHHHHH---HHHCCCcEEEEecCCCC--------ChhhH-HHHHHHHHH
Confidence 566655543 46666665 344555555444 33444444443333332 44333 339999999
Q ss_pred cCCCEEEEEeeeehhH
Q 025131 168 VKPPIFTLCVGNAWGE 183 (257)
Q Consensus 168 i~~~V~Tv~~G~AaS~ 183 (257)
.++++.-+++|.=-..
T Consensus 98 ~~pdiv~vglG~PkQE 113 (171)
T cd06533 98 SGADILFVGLGAPKQE 113 (171)
T ss_pred cCCCEEEEECCCCHHH
Confidence 9999999999964444
No 161
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.62 E-value=3.2e+02 Score=23.05 Aligned_cols=66 Identities=23% Similarity=0.191 Sum_probs=34.4
Q ss_pred EEEeCcccChh---------HHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHh-------hHHHHH--HHHh
Q 025131 105 IVYLGMSFVPS---------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET-------EAFAIY--DVMG 166 (257)
Q Consensus 105 IIfLgg~I~~~---------~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~-------aGlAIy--D~m~ 166 (257)
|||+|+-|+.- -...++++.+ ....+..++.++=-.-| |+-+ .++.-+ +.+.
T Consensus 2 iv~~GDSiT~G~~~~~~~~~~w~~~l~~~l--~~~~~~~~~~v~N~Gi~--------G~t~~~~~~~~~~l~r~~~~v~~ 71 (204)
T cd01830 2 VVALGDSITDGRGSTPDANNRWPDLLAARL--AARAGTRGIAVLNAGIG--------GNRLLADGLGPSALARFDRDVLS 71 (204)
T ss_pred EEEEecccccCCCCCCCCCCcCHHHHHHHH--HhccCCCCcEEEECCcc--------CcccccCCCChHHHHHHHHHHhc
Confidence 67777777642 1223333322 22223456776555556 6543 344444 3444
Q ss_pred ccCCCEEEEEeeee
Q 025131 167 YVKPPIFTLCVGNA 180 (257)
Q Consensus 167 ~i~~~V~Tv~~G~A 180 (257)
..++++.+++.|.-
T Consensus 72 ~~~p~~vii~~G~N 85 (204)
T cd01830 72 QPGVRTVIILEGVN 85 (204)
T ss_pred CCCCCEEEEecccc
Confidence 44567788887754
Done!