BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025132
         (257 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein
           Hypb From Thermococcus Kodakarensis Kod1
 pdb|3VX3|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation Protein
           Hypb From Thermococcus Kodakarensis Kod1
          Length = 248

 Score = 32.0 bits (71), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 107 RMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKV 146
           + +R GL+    HG+  H    F  + FP +D  VVP  V
Sbjct: 47  KGYRVGLLDLDFHGASDHVILGFEPKEFPEEDRGVVPPTV 86


>pdb|1DLC|A Chain A, Crystal Structure Of Insecticidal Delta-Endotoxin From
           Bacillus Thuringiensis At 2.5 Angstroms Resolution
          Length = 584

 Score = 27.3 bits (59), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 112 GLVGFTLHGSLSHYYYQFCEELFPFQDWW 140
           G+VGF   G+L  +Y  F   ++P +D W
Sbjct: 18  GVVGFPFGGALVSFYTNFLNTIWPSEDPW 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,327,267
Number of Sequences: 62578
Number of extensions: 343440
Number of successful extensions: 807
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 4
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)