Query 025132
Match_columns 257
No_of_seqs 149 out of 1020
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 100.0 6.3E-40 1.4E-44 289.5 12.0 171 69-239 46-220 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.9 4.2E-23 9.1E-28 150.3 3.5 68 165-232 1-68 (68)
3 KOG1944 Peroxisomal membrane p 73.2 6.2 0.00013 35.0 4.8 51 11-61 46-97 (222)
4 PF07423 DUF1510: Protein of u 51.4 14 0.00031 32.8 2.9 28 7-34 2-29 (217)
5 PF03818 MadM: Malonate/sodium 38.8 86 0.0019 22.3 4.6 36 64-99 3-38 (60)
6 PF10929 DUF2811: Protein of u 31.3 78 0.0017 22.3 3.4 28 89-118 12-39 (57)
7 PF06056 Terminase_5: Putative 27.4 33 0.00072 23.9 1.1 15 44-58 10-24 (58)
8 PF05525 Branch_AA_trans: Bran 27.2 5.4E+02 0.012 25.2 9.7 90 7-96 211-307 (427)
9 COG3730 SrlA Phosphotransferas 23.8 1.9E+02 0.0041 24.6 5.0 33 7-39 17-49 (176)
10 cd07215 Pat17_PNPLA8_PNPLA9_li 22.9 50 0.0011 30.6 1.7 51 36-86 1-55 (329)
11 PF06800 Sugar_transport: Suga 22.9 1.5E+02 0.0032 27.2 4.7 34 3-38 121-156 (269)
12 PF08535 KorB: KorB domain; I 21.8 56 0.0012 24.5 1.5 39 46-84 2-42 (93)
13 KOG0721 Molecular chaperone (D 20.8 91 0.002 28.0 2.8 59 16-75 66-131 (230)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=100.00 E-value=6.3e-40 Score=289.48 Aligned_cols=171 Identities=32% Similarity=0.656 Sum_probs=161.9
Q ss_pred HhhCChhHHHHHHHHHH-HHHHHHHHhHhcCC---CCccchhhHHHHHHHHHhhhhhHHhHHHHHhhhhcCCCCccchhH
Q 025132 69 LKTNPVLAKMVISGVVY-SLGDWIAQCFQGKP---LFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPA 144 (257)
Q Consensus 69 L~~~Pl~tk~itsgvl~-~lGD~laQ~ie~k~---~~~~D~~Rt~r~~~~G~~~~GP~~h~wy~~Ld~~~p~~~~~~v~~ 144 (257)
...+|+++++++++.+. ..||.++|.++.++ ..++|+.|++||+++|+++.||..|+||++|++++|.++..++++
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~ 125 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVK 125 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccCccHHHHHH
Confidence 46799999999999998 99999999998765 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCCChHhHHHHHhhcchhhhhccceehhHHHHhhhhcccCCchhhHhhHHHHHHHH
Q 025132 145 KVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVT 224 (257)
Q Consensus 145 KvllDQ~v~sP~~~~~F~~~~~lL~g~s~~~i~~~lk~~~~~~l~~~~~vWpp~q~inF~~VP~~~Rvlf~n~v~~~W~~ 224 (257)
|+++||++++|+.+.+|+.+++++||++.++..++++++++|+++++|++||++|++||++||+++|++|+|+++++|++
T Consensus 126 kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~~ 205 (222)
T KOG1944|consen 126 KVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVWNT 205 (222)
T ss_pred HHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCcchhhhhh
Q 025132 225 ILSTYSNEKSEARIA 239 (257)
Q Consensus 225 yLS~~~n~~~~~~~~ 239 (257)
|||++++++.+.+.+
T Consensus 206 ~Ls~~~~~~~~~~~~ 220 (222)
T KOG1944|consen 206 YLSYKNASLVELAGA 220 (222)
T ss_pred HHHHHhhcccccccc
Confidence 999999888554443
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.87 E-value=4.2e-23 Score=150.25 Aligned_cols=68 Identities=41% Similarity=0.778 Sum_probs=66.1
Q ss_pred HHHhcCCChHhHHHHHhhcchhhhhccceehhHHHHhhhhcccCCchhhHhhHHHHHHHHHHhhhcCc
Q 025132 165 LGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNE 232 (257)
Q Consensus 165 ~~lL~g~s~~~i~~~lk~~~~~~l~~~~~vWpp~q~inF~~VP~~~Rvlf~n~v~~~W~~yLS~~~n~ 232 (257)
|+++||++.+++++++|++|+++++++|++|||+|++||.+||+++|++|+|+|+++|++|||+++|+
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=73.20 E-value=6.2 Score=34.98 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=45.2
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHhhhheeeeeccc-ccccCHHHHHHhhhHHH
Q 025132 11 EEMERLIDRTINATIVLAVGTFAITKLLTIDQDY-WHGWTIFEIVRYAPLHN 61 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gwt~~ei~~~~p~~~ 61 (257)
+....++.+.++..++...++-++.+.+++++++ +++|.+..++|.++.+.
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~ 97 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGF 97 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhh
Confidence 4667788888999888889999999999999999 89999999999998663
No 4
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=51.43 E-value=14 Score=32.81 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=21.5
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHhh
Q 025132 7 RRGNEEMERLIDRTINATIVLAVGTFAI 34 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (257)
|-....++|..++.||.+|.+++++.++
T Consensus 2 Rf~~r~KrRK~N~iLNiaI~IV~lLIii 29 (217)
T PF07423_consen 2 RFQQRQKRRKTNKILNIAIGIVSLLIII 29 (217)
T ss_pred chhHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3445678999999999999887766544
No 5
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=38.84 E-value=86 Score=22.33 Aligned_cols=36 Identities=14% Similarity=0.399 Sum_probs=32.2
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHHHHHhHhcCC
Q 025132 64 AYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKP 99 (257)
Q Consensus 64 ~Y~~~L~~~Pl~tk~itsgvl~~lGD~laQ~ie~k~ 99 (257)
..++.+++|.|.|..+.-|+++-++.+++-++.+.+
T Consensus 3 ~i~~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~Gr 38 (60)
T PF03818_consen 3 MIEKVLTKNGLITAFAVVGIIMWVSYWLSKKLTRGR 38 (60)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356889999999999999999999999999988664
No 6
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=31.28 E-value=78 Score=22.33 Aligned_cols=28 Identities=29% Similarity=0.668 Sum_probs=19.3
Q ss_pred HHHHHhHhcCCCCccchhhHHHHHHHHHhh
Q 025132 89 DWIAQCFQGKPLFEFDRTRMFRSGLVGFTL 118 (257)
Q Consensus 89 D~laQ~ie~k~~~~~D~~Rt~r~~~~G~~~ 118 (257)
+.+.+.++..| ++|..|.+..++.|+++
T Consensus 12 ~~m~~fie~hP--~WDQ~Rl~~aALa~FL~ 39 (57)
T PF10929_consen 12 QAMKDFIETHP--NWDQYRLFQAALAGFLL 39 (57)
T ss_pred HHHHHHHHcCC--CchHHHHHHHHHHHHHH
Confidence 44555566655 57888888888888765
No 7
>PF06056 Terminase_5: Putative ATPase subunit of terminase (gpP-like); InterPro: IPR010332 This family of proteins are annotated as ATPase subunits of phage terminase after []. Terminases are viral proteins that are involved in packaging viral DNA into the capsid.; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=27.38 E-value=33 Score=23.94 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=13.0
Q ss_pred cccccCHHHHHHhhh
Q 025132 44 YWHGWTIFEIVRYAP 58 (257)
Q Consensus 44 ~~~gwt~~ei~~~~p 58 (257)
|++||++.||++.+-
T Consensus 10 Y~~G~~~~eIA~~Lg 24 (58)
T PF06056_consen 10 YLQGWSIKEIAEELG 24 (58)
T ss_pred HHcCCCHHHHHHHHC
Confidence 689999999998765
No 8
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=27.23 E-value=5.4e+02 Score=25.19 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=62.0
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHhhhheeeeec----c-cccccCHHHHHHhhhHHHHHHHHHHHhhCChhHHHHHH
Q 025132 7 RRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQ----D-YWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVIS 81 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~gwt~~ei~~~~p~~~~~~Y~~~L~~~Pl~tk~its 81 (257)
+++.+|+++....++.+.++++.....+|--|.-=. + +-+.=.-.|++.++..++...+-..+-.==+.-.+.|.
T Consensus 211 ~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTT 290 (427)
T PF05525_consen 211 QKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTT 290 (427)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 344556788888999999999999998887665311 1 12233446888888888887777766555555555554
Q ss_pred --HHHHHHHHHHHHhHh
Q 025132 82 --GVVYSLGDWIAQCFQ 96 (257)
Q Consensus 82 --gvl~~lGD~laQ~ie 96 (257)
|.+.+++|...+...
T Consensus 291 aIGL~~a~a~yf~~~~~ 307 (427)
T PF05525_consen 291 AIGLISACAEYFSELFP 307 (427)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 456778888887765
No 9
>COG3730 SrlA Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]
Probab=23.77 E-value=1.9e+02 Score=24.62 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=30.6
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHhhhheee
Q 025132 7 RRGNEEMERLIDRTINATIVLAVGTFAITKLLT 39 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (257)
|++||..-.+....++.+|++..+.+++.+.+.
T Consensus 17 Q~gGevF~~mvTGIiPlLI~Ll~~~nali~~iG 49 (176)
T COG3730 17 QKGGEVFTGMVTGIIPLLISLLVAMNALINFIG 49 (176)
T ss_pred HhcchhHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999988876
No 10
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=22.95 E-value=50 Score=30.62 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=33.3
Q ss_pred heeeeecccccccCHHHHHHhhhHHHHHHH----HHHHhhCChhHHHHHHHHHHH
Q 025132 36 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAY----EEALKTNPVLAKMVISGVVYS 86 (257)
Q Consensus 36 ~~~~~~~~~~~gwt~~ei~~~~p~~~~~~Y----~~~L~~~Pl~tk~itsgvl~~ 86 (257)
+||.+|.|..||--.-.+++++..++-..+ .+..+.-.+.+-.=|+|++.+
T Consensus 1 rILslDGGGirG~~~~~iL~~le~~l~~~~g~~~~~i~~~fDli~GTStGgiia~ 55 (329)
T cd07215 1 RILSIDGGGIRGIIPATILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTC 55 (329)
T ss_pred CEEEEcCChHHHHHHHHHHHHHHHHHhhhcCCCCCcHhhccCeeeccCHHHHHHH
Confidence 589999999999999999998886542111 012233346666666665543
No 11
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=22.90 E-value=1.5e+02 Score=27.25 Aligned_cols=34 Identities=6% Similarity=0.272 Sum_probs=17.0
Q ss_pred cccccccch--HHHHHHHhhhhHHHHHHHHHHhhhhee
Q 025132 3 SWRVRRGNE--EMERLIDRTINATIVLAVGTFAITKLL 38 (257)
Q Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (257)
+|+.+++.+ ++.+.++.++ .++....+|.+|.++
T Consensus 121 s~~~~~~~~~~~~~~~~kgi~--~Ll~stigy~~Y~~~ 156 (269)
T PF06800_consen 121 SYQDKKSDKSSSKSNMKKGIL--ALLISTIGYWIYSVI 156 (269)
T ss_pred ccccccccccccccchhhHHH--HHHHHHHHHHHHHHH
Confidence 455544443 2334444443 345556666666655
No 12
>PF08535 KorB: KorB domain; InterPro: IPR013741 This entry contains several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This domain includes the DNA-binding HTH motif []. ; PDB: 1R71_C.
Probab=21.78 E-value=56 Score=24.47 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=24.4
Q ss_pred cccCHHHHHHhhhH--HHHHHHHHHHhhCChhHHHHHHHHH
Q 025132 46 HGWTIFEIVRYAPL--HNWTAYEEALKTNPVLAKMVISGVV 84 (257)
Q Consensus 46 ~gwt~~ei~~~~p~--~~~~~Y~~~L~~~Pl~tk~itsgvl 84 (257)
.|||..||++++-. ...+.|.++++--+-+.+++.+|.+
T Consensus 2 ~G~tq~eIA~~lGks~s~Vs~~l~Ll~lP~~i~~~v~~g~~ 42 (93)
T PF08535_consen 2 FGWTQEEIAKRLGKSRSWVSNHLALLDLPEEIKELVRSGRI 42 (93)
T ss_dssp TT--HHHHHHHTT--HHHHHHHHGGGS--HHHHHHHHTTS-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 59999999999884 3346777777666677777775543
No 13
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.80 E-value=91 Score=27.96 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=43.4
Q ss_pred HHHhhhhHHHHHH--HHHHhhhheeeeecccccccCHHHHHHhhh----HHHHHHHHHH-HhhCChh
Q 025132 16 LIDRTINATIVLA--VGTFAITKLLTIDQDYWHGWTIFEIVRYAP----LHNWTAYEEA-LKTNPVL 75 (257)
Q Consensus 16 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gwt~~ei~~~~p----~~~~~~Y~~~-L~~~Pl~ 75 (257)
.+...-|..+|++ +.+|.++++-+.| -..++|.++|||---| +.+=.+|.++ ++-||=.
T Consensus 66 ~~~~~~~i~lv~~W~v~~fL~y~i~~~~-~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK 131 (230)
T KOG0721|consen 66 SISTKRKVFLVVGWAVIAFLIYKIMNSR-RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDK 131 (230)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhh-HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCc
Confidence 5556677777775 6678899999998 5678999999987766 3455667775 5667733
Done!