Query 025132
Match_columns 257
No_of_seqs 149 out of 1020
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mp7_B Preprotein translocase 11.3 2.7E+02 0.0094 18.7 3.7 33 5-37 22-54 (61)
2 3pev_B Nucleoporin GLE1; RECA, 11.2 3.2E+02 0.011 24.0 5.2 78 9-95 166-247 (297)
3 2vqc_A Hypothetical 13.2 kDa p 10.0 68 0.0023 23.8 0.3 26 86-113 31-57 (118)
4 1rh5_B Preprotein translocase 9.4 3.1E+02 0.011 19.2 3.6 32 6-37 27-58 (74)
5 1p58_D Envelope protein M; fla 9.1 3.6E+02 0.012 18.9 3.8 32 63-95 30-61 (75)
6 2ju0_B Phosphatidylinositol 4- 9.1 65 0.0022 21.3 -0.1 22 11-32 27-48 (52)
7 1xrd_A LH-1, light-harvesting 8.4 3.2E+02 0.011 17.9 3.0 31 102-132 7-43 (52)
8 4aw6_A CAAX prenyl protease 1 6.2 9.6E+02 0.033 22.4 6.5 46 113-159 132-184 (482)
9 2bma_A Glutamate dehydrogenase 6.2 1.1E+03 0.037 22.1 6.8 60 18-84 390-458 (470)
10 2ww9_B Protein transport prote 5.3 6.2E+02 0.021 17.9 3.5 28 8-35 42-69 (80)
No 1
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=11.30 E-value=2.7e+02 Score=18.66 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=21.5
Q ss_pred cccccchHHHHHHHhhhhHHHHHHHHHHhhhhe
Q 025132 5 RVRRGNEEMERLIDRTINATIVLAVGTFAITKL 37 (257)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (257)
|...+.+|-.+......=..++.|+.+|++.-+
T Consensus 22 ~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli 54 (61)
T 3mp7_B 22 TKKPNWATYKRAAKITGLGIILIGLIGMLIRIV 54 (61)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666677778888877544
No 2
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=11.21 E-value=3.2e+02 Score=24.00 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=40.9
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHhhhheeeeecccccccCHHHHHHhhhHHHHHHHHHHHhhCChh-HHH---HHHHHH
Q 025132 9 GNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVL-AKM---VISGVV 84 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gwt~~ei~~~~p~~~~~~Y~~~L~~~Pl~-tk~---itsgvl 84 (257)
+-|+++++.+|+- +|+.+.++.. ......+...+ ..-.+.+.+.|++..+.|...|.. |.. +..+.+
T Consensus 166 ~~E~~~~y~~Rm~--Gi~~lyAAI~---~~~~~~~~~~~----~~~p~~~~~~W~wLArilN~~p~~~t~t~~~vL~~~L 236 (297)
T 3pev_B 166 KWEDNTSYDERMG--GILSLFAIIT---RLQLPQEFITT----TSHPFPIALSWHILARICNTPLNLITNTHFVILGSWW 236 (297)
T ss_dssp CBCCHHHHHHHHH--HHHHHHHHHH---HSCCCTTTTTT----SCCSSCTHHHHHHHHHHHTSCGGGCCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHH--HHHHHHHHHH---hCcCccccccc----CCCCCCchHHHHHHHHHhCCCHHhhcccHHHHHHHHH
Confidence 4578899999984 3444444332 22222111000 011234467788888888888874 332 444444
Q ss_pred HHHHHHHHHhH
Q 025132 85 YSLGDWIAQCF 95 (257)
Q Consensus 85 ~~lGD~laQ~i 95 (257)
=.+|.-+.|.+
T Consensus 237 e~ag~~l~~~Y 247 (297)
T 3pev_B 237 DAAAVQFLQAY 247 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44554444443
No 3
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=10.04 E-value=68 Score=23.82 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=17.7
Q ss_pred HHHHHHHHh-HhcCCCCccchhhHHHHHH
Q 025132 86 SLGDWIAQC-FQGKPLFEFDRTRMFRSGL 113 (257)
Q Consensus 86 ~lGD~laQ~-ie~k~~~~~D~~Rt~r~~~ 113 (257)
.+-|++||. +... ..|+..|++|+.+
T Consensus 31 sledilaqfeis~~--sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISVP--SAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHH--HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc--hHhHHHHHHHHHH
Confidence 467999998 3322 2578888888754
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=9.36 E-value=3.1e+02 Score=19.17 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=20.0
Q ss_pred ccccchHHHHHHHhhhhHHHHHHHHHHhhhhe
Q 025132 6 VRRGNEEMERLIDRTINATIVLAVGTFAITKL 37 (257)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (257)
..-+.+|-.+......=..++.|+.+|+|.-+
T Consensus 27 ~KPdr~EF~~iak~~~iG~~imG~IGfiIkli 58 (74)
T 1rh5_B 27 KKPTKDEYLAVAKVTALGISLLGIIGYIIHVP 58 (74)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666667778888877543
No 5
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=9.12 E-value=3.6e+02 Score=18.87 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=26.7
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHhH
Q 025132 63 TAYEEALKTNPVLAKMVISGVVYSLGDWIAQCF 95 (257)
Q Consensus 63 ~~Y~~~L~~~Pl~tk~itsgvl~~lGD~laQ~i 95 (257)
.+-++..-|||..+=++. .+.+.+|+...|++
T Consensus 30 ~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrv 61 (75)
T 1p58_D 30 QRIETWILRHPGFTIMAA-ILAYTIGTTHFQRV 61 (75)
T ss_pred HHHHHHHHHChHHHHHHH-HHHHHHcCChHHHH
Confidence 345788889999999888 88889999888874
No 6
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=9.06 E-value=65 Score=21.30 Aligned_cols=22 Identities=5% Similarity=0.049 Sum_probs=18.1
Q ss_pred hHHHHHHHhhhhHHHHHHHHHH
Q 025132 11 EEMERLIDRTINATIVLAVGTF 32 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~ 32 (257)
.+.+++.+++.+++++.++.+-
T Consensus 27 ~~~~k~~ENv~PalVL~s~v~s 48 (52)
T 2ju0_B 27 DKNVKIHENVAPALVLSSMIMS 48 (52)
T ss_dssp CTTCCSSCSHHHHHHHHHHHHH
T ss_pred cchHHhhccccHHHHHHHHHHH
Confidence 4557899999999999888754
No 7
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=8.41 E-value=3.2e+02 Score=17.93 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=19.2
Q ss_pred ccchhhHHHHHHHHHhhhhhHHhHH------HHHhhh
Q 025132 102 EFDRTRMFRSGLVGFTLHGSLSHYY------YQFCEE 132 (257)
Q Consensus 102 ~~D~~Rt~r~~~~G~~~~GP~~h~w------y~~Ld~ 132 (257)
-+|++|++-......+..+-+.|+- |++||.
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~~ 43 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccC
Confidence 4799998665555444556666663 455653
No 8
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=6.22 E-value=9.6e+02 Score=22.37 Aligned_cols=46 Identities=17% Similarity=0.002 Sum_probs=27.2
Q ss_pred HHHHhhhhhHHhHHHH-HhhhhcCCCC------ccchhHHHHHHHhhhhHHHHH
Q 025132 113 LVGFTLHGSLSHYYYQ-FCEELFPFQD------WWVVPAKVAFDQTAWAAAWNS 159 (257)
Q Consensus 113 ~~G~~~~GP~~h~wy~-~Ld~~~p~~~------~~~v~~KvllDQ~v~sP~~~~ 159 (257)
+++.++.=|+.. |.. .+|..++.+. ....++..++.+.+..|+...
T Consensus 132 l~~~l~~LP~~~-Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~ 184 (482)
T 4aw6_A 132 LFSALAGLPWSL-YNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSL 184 (482)
T ss_dssp HHHHHHHHHHHH-HHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHH-HHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445433 223 4787776532 346777888888888887543
No 9
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=6.16 E-value=1.1e+03 Score=22.09 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=34.5
Q ss_pred HhhhhHHHHHHHHHHhhhheeeeeccccc-ccCHHHHHHhhhHHHHHHHHHHHhh-----C---ChhHHHHHHHHH
Q 025132 18 DRTINATIVLAVGTFAITKLLTIDQDYWH-GWTIFEIVRYAPLHNWTAYEEALKT-----N---PVLAKMVISGVV 84 (257)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gwt~~ei~~~~p~~~~~~Y~~~L~~-----~---Pl~tk~itsgvl 84 (257)
|.+.|+.=|.++.. ++-.+..+ +||..|+-+++-..+-..|++..+. . ++++-+-+.|+.
T Consensus 390 D~~aNAGGV~~S~~-------E~~qn~~~~~w~~eev~~~L~~im~~~~~~~~~~a~~~~~~~~~~r~~A~i~~~~ 458 (470)
T 2bma_A 390 SKAANAGGVAISGL-------EMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFL 458 (470)
T ss_dssp HHHHTTHHHHHHHH-------HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hHHhhCCCceeeHH-------HhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 55678874444432 32233233 8999999888776666666665522 2 455555554443
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=5.32 E-value=6.2e+02 Score=17.92 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=16.2
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHhhh
Q 025132 8 RGNEEMERLIDRTINATIVLAVGTFAIT 35 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (257)
.+.+|-.+......=..++.|+.+|+|.
T Consensus 42 Pdr~Ef~~iak~t~iG~~imG~IGfiIk 69 (80)
T 2ww9_B 42 PDLKEYTKIVKAVGIGFIAVGIIGYAIK 69 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555666777777654
Done!