Query 025132
Match_columns 257
No_of_seqs 149 out of 1020
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 04:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025132.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025132hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 16.3 16 0.0012 23.3 0.3 26 86-113 22-48 (70)
2 d1xrda1 f.3.1.1 (A:1-52) Light 12.5 88 0.0064 19.0 3.0 31 102-132 7-43 (52)
3 d1l5aa1 c.43.1.2 (A:1-174) Vib 11.7 90 0.0065 22.1 3.6 32 37-72 121-152 (174)
4 d1e58a_ c.60.1.1 (A:) Phosphog 7.3 1E+02 0.0074 23.6 2.4 32 36-67 85-116 (247)
5 d1q9ja1 c.43.1.2 (A:1-175) Pol 7.2 1.6E+02 0.012 20.5 3.5 31 37-71 119-149 (175)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.9 53 0.0039 17.0 0.2 15 190-204 6-20 (26)
7 d1h2vc1 a.118.1.14 (C:29-290) 5.6 2.6E+02 0.019 21.6 4.1 70 140-209 37-115 (262)
8 d1qrjb1 a.28.3.1 (B:131-214) H 5.4 1.3E+02 0.0094 19.8 1.7 19 6-24 7-25 (84)
9 d1oxwa_ c.19.1.3 (A:) Patatin 5.4 1.4E+02 0.01 23.6 2.3 26 35-60 5-30 (360)
10 d2vv5a3 f.34.1.1 (A:27-112) Me 5.3 2.2E+02 0.016 17.8 2.9 33 9-42 35-67 (86)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=16.27 E-value=16 Score=23.26 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=17.6
Q ss_pred HHHHHHHHh-HhcCCCCccchhhHHHHHH
Q 025132 86 SLGDWIAQC-FQGKPLFEFDRTRMFRSGL 113 (257)
Q Consensus 86 ~lGD~laQ~-ie~k~~~~~D~~Rt~r~~~ 113 (257)
.+-|++||. +... ..|+..|++++.+
T Consensus 22 ~ledilaqfeis~~--~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVP--SAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHH--HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc--hHhHHHHHHHHHH
Confidence 467999998 3222 2578888888754
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=12.49 E-value=88 Score=19.03 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=19.3
Q ss_pred ccchhhHHHHHHHHHhhhhhHHhHH------HHHhhh
Q 025132 102 EFDRTRMFRSGLVGFTLHGSLSHYY------YQFCEE 132 (257)
Q Consensus 102 ~~D~~Rt~r~~~~G~~~~GP~~h~w------y~~Ld~ 132 (257)
-+|+||++.......+.-+-+.|+- |+++|.
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWleg 43 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCccccccC
Confidence 4899998765555555556666653 556653
No 3
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=11.74 E-value=90 Score=22.15 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=25.5
Q ss_pred eeeeecccccccCHHHHHHhhhHHHHHHHHHHHhhC
Q 025132 37 LLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTN 72 (257)
Q Consensus 37 ~~~~~~~~~~gwt~~ei~~~~p~~~~~~Y~~~L~~~ 72 (257)
+++++|-+..||+..-+++ ++...|+..+...
T Consensus 121 ~~~~hHii~Dg~S~~~l~~----el~~~Y~~~~~g~ 152 (174)
T d1l5aa1 121 YTRAHHIVLDGYGMMLFEQ----RLSQHYQSLLSGQ 152 (174)
T ss_dssp EEEEETTTCCHHHHHHHHH----HHHHHHHHHHHTC
T ss_pred eeecccEEEcHhHHHHHHH----HHHHHHHHHhCCC
Confidence 5789999999999999987 4557788766654
No 4
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli [TaxId: 562]}
Probab=7.30 E-value=1e+02 Score=23.61 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=24.6
Q ss_pred heeeeecccccccCHHHHHHhhhHHHHHHHHH
Q 025132 36 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEE 67 (257)
Q Consensus 36 ~~~~~~~~~~~gwt~~ei~~~~p~~~~~~Y~~ 67 (257)
.+-++|.|.|.|-+..|+....|.....+...
T Consensus 85 ~L~E~~~G~~eG~~~~ei~~~~~~e~~~~~~~ 116 (247)
T d1e58a_ 85 KLNERHYGALQGLNKAETAEKYGDEQVKQWRR 116 (247)
T ss_dssp GGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHH
T ss_pred chhhccccccCCCcHHHHHHHhHHHHHHHHhc
Confidence 46688999999999999999988654443333
No 5
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.18 E-value=1.6e+02 Score=20.47 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=25.4
Q ss_pred eeeeecccccccCHHHHHHhhhHHHHHHHHHHHhh
Q 025132 37 LLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKT 71 (257)
Q Consensus 37 ~~~~~~~~~~gwt~~ei~~~~p~~~~~~Y~~~L~~ 71 (257)
+++++|-+..||+..-+++ ++...|++.+..
T Consensus 119 ~l~~HH~i~Dg~S~~~ll~----el~~~Y~~~~~~ 149 (175)
T d1q9ja1 119 TLYLHHCMADGHHGAVLVD----ELFSRYTDAVTT 149 (175)
T ss_dssp EEEEEGGGCCHHHHHHHHH----HHHHHHHHHHHS
T ss_pred EEEccccccCHhHHHHHHH----HHHHHHHHHHhC
Confidence 5789999999999988877 666789887654
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.94 E-value=53 Score=17.03 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=10.6
Q ss_pred ccceehhHHHHhhhh
Q 025132 190 AGWKLWPFAHLVTYG 204 (257)
Q Consensus 190 ~~~~vWpp~q~inF~ 204 (257)
+-|.+|.+.-.+.|+
T Consensus 6 aiw~fw~ffalli~y 20 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYY 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457788877777764
No 7
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.58 E-value=2.6e+02 Score=21.61 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=46.4
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCChH---hHHHHHhhcchhhhhcc-c-----eehhHHHHhhhhcccCC
Q 025132 140 WVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPF---SIFSELKATFWPMLTAG-W-----KLWPFAHLVTYGLVPVE 209 (257)
Q Consensus 140 ~~v~~KvllDQ~v~sP~~~~~F~~~~~lL~g~s~~---~i~~~lk~~~~~~l~~~-~-----~vWpp~q~inF~~VP~~ 209 (257)
+..+.+.+++.....|..+.+|-+..++++-+.++ ++.+++..+|-..+..+ | .+--.++++|+..++..
T Consensus 37 ~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~~ 115 (262)
T d1h2vc1 37 KSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAP 115 (262)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCHH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcHh
Confidence 56678888888888999988888888888876653 34445555555444432 1 23356777777766653
No 8
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=5.42 E-value=1.3e+02 Score=19.84 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=14.9
Q ss_pred ccccchHHHHHHHhhhhHH
Q 025132 6 VRRGNEEMERLIDRTINAT 24 (257)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (257)
.|+..|...+++||++.++
T Consensus 7 kQGpkEpf~dfVdRl~~a~ 25 (84)
T d1qrjb1 7 LQGLEEPYHAFVERLNIAL 25 (84)
T ss_dssp CBCTTSCHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHH
Confidence 3667788889999998764
No 9
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]}
Probab=5.41 E-value=1.4e+02 Score=23.61 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.6
Q ss_pred hheeeeecccccccCHHHHHHhhhHH
Q 025132 35 TKLLTIDQDYWHGWTIFEIVRYAPLH 60 (257)
Q Consensus 35 ~~~~~~~~~~~~gwt~~ei~~~~p~~ 60 (257)
..||.+|.|..||.-...+++++...
T Consensus 5 v~iLsldGGG~rG~~~~~vL~~L~~~ 30 (360)
T d1oxwa_ 5 VTVLSIDGGGIRGIIPATILEFLEGQ 30 (360)
T ss_dssp EEEEEECCCGGGGHHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHc
Confidence 46899999999999999999988654
No 10
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=5.32 E-value=2.2e+02 Score=17.81 Aligned_cols=33 Identities=6% Similarity=0.056 Sum_probs=23.5
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHhhhheeeeec
Q 025132 9 GNEEMERLIDRTINATIVLAVGTFAITKLLTIDQ 42 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (257)
..+...++++++++.++.......++ +.+.+|-
T Consensus 35 ~~~~~~~~i~~~~~~~i~~i~~~~~L-~~~Gi~~ 67 (86)
T d2vv5a3 35 IDATVADFLSALVRYGIIAFTLIAAL-GRVGVQT 67 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCCS
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCH
Confidence 34556788899999888877777665 5666663
Done!