BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025133
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2
SV=2
Length = 394
Score = 207 bits (526), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 162/244 (66%), Gaps = 6/244 (2%)
Query: 2 EDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRI 61
E+ ED P V I ET H+ + + + + VT++TG+LGAGK+TL+NYIL +H ++I
Sbjct: 12 EEYAEDCPELVPI-ETKHQEKEENLDFIIKIPVTIVTGYLGAGKTTLLNYILTEQHNRKI 70
Query: 62 AVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERL 121
AVILNEFGE VE+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K +
Sbjct: 71 AVILNEFGEGSAVEKSLAV-SQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKGKF 129
Query: 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181
D+ILLETTGLA+P +AS+ W+D +L S + LD IITVVD+K L + + + EA
Sbjct: 130 DYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEA 189
Query: 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241
Q+A AD++++NK DLVS E L++L I IN L V+ + R + LS +L+
Sbjct: 190 TRQVALADMILINKTDLVSEEE----LNKLRTTIRSINGLGKVLETQRSRTHLSNILDLH 245
Query: 242 AYDA 245
AYD
Sbjct: 246 AYDT 249
>sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1
Length = 393
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 160/245 (65%), Gaps = 11/245 (4%)
Query: 2 EDEEEDPPLAVRIDETTHEFSNSHENDD--VSVGVTVITGFLGAGKSTLVNYILNGKHGK 59
E+ ED P V I+ E EN D + VT++TG+LGAGK+TL+NYIL +H +
Sbjct: 12 EEYAEDCPELVPIETKNQE----EENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNR 67
Query: 60 RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
+IAVILNEFGE VE+++ +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K
Sbjct: 68 KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKG 126
Query: 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179
+ D+ILLETTGLA+P +AS+ W+D +L S + LD IITVVD+K L + + +
Sbjct: 127 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVN 186
Query: 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239
EA Q+A AD++++NK DLVS E L+ L I IN L V+ + R +V LS +L+
Sbjct: 187 EATRQVALADMILINKTDLVSEEE----LNNLRTTIRSINGLGKVLETQRSRVHLSNILD 242
Query: 240 CRAYD 244
AYD
Sbjct: 243 LHAYD 247
>sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1
Length = 395
Score = 204 bits (519), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 153/230 (66%), Gaps = 5/230 (2%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNEFGE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
+AS+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD +++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINK 204
Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1
Length = 395
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 153/230 (66%), Gaps = 5/230 (2%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNEFGE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D+ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
+AS+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD +++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQVALADAILINK 204
Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1
Length = 395
Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 152/230 (66%), Gaps = 5/230 (2%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNE GE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
+AS+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204
Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|Q4V339|CBWD6_HUMAN COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1
Length = 395
Score = 197 bits (501), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 152/230 (66%), Gaps = 5/230 (2%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNE GE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
+AS+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204
Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
DLV PE + + +L + IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTLRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1
Length = 395
Score = 197 bits (500), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 151/230 (65%), Gaps = 5/230 (2%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNE GE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195
+ S+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK
Sbjct: 145 AVTSMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204
Query: 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|O74310|YOG5_SCHPO COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1
Length = 411
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 148/213 (69%), Gaps = 10/213 (4%)
Query: 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
V VT++TGFLGAGK++L+ IL ++GKR+AV++NE G+ +ER+++ + G L EEW
Sbjct: 61 VPVTILTGFLGAGKTSLLRSILENRNGKRVAVLMNEVGDSGDLERSLMEDVGGEELYEEW 120
Query: 92 VELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAV 151
V L+NGC+CCTVK + ++ALE+++++K R D+I++ETTG+ANP PLA WLDD L+S V
Sbjct: 121 VALSNGCMCCTVKDNGIKALEKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDALKSDV 180
Query: 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDEL 211
+LD I+TV+D KN ID S I QI+ AD +ILNK DL+S E +L +
Sbjct: 181 KLDGIVTVIDCKN----IDNILKDESDIGFI-QISHADCLILNKTDLISSE----ALSVV 231
Query: 212 EKEIHEINSLAHVIRSVRCQV-DLSEVLNCRAY 243
+ I +IN LA +I + ++ D+SE+L+ AY
Sbjct: 232 RQTILKINCLAKIIETTYGRLDDISEILDLDAY 264
>sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1
Length = 429
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 153/245 (62%), Gaps = 17/245 (6%)
Query: 13 RIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI 72
+++ T+ ++ HE + V ++ITG+LG+GKSTL+ I K+IAVILNEFG+
Sbjct: 54 QVENTSAGATDVHEKKRIPV--SIITGYLGSGKSTLLEKIALKGADKKIAVILNEFGDSS 111
Query: 73 GVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE-RLDHILLETTGL 131
+E+AM + G +EW++L NGC+CC++K+ V+A+E +V+R ++D+ILLET+G+
Sbjct: 112 EIEKAMTIK-NGSNSYQEWLDLGNGCLCCSLKNIGVKAIEDMVERSPGKIDYILLETSGI 170
Query: 132 ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-----FQIDKYRHL------SSYPE 180
A+PAP+A + W D+ L S+V +D IITV+D +++L ID + H +
Sbjct: 171 ADPAPIAKMFWQDEGLNSSVYIDGIITVLDCEHILKCLDDISIDAHWHGDKVGLEGNLTI 230
Query: 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240
A Q+A AD +I+NK D + E S + + +L++ + EINS+A + + + +L+
Sbjct: 231 AHFQLAMADRIIMNKYDTI--EHSPEMVKQLKERVREINSIAPMFFTKYSDTPIQNLLDI 288
Query: 241 RAYDA 245
AYD+
Sbjct: 289 HAYDS 293
>sp|Q869Q0|Y4527_DICDI COBW domain-containing protein DDB_G0274527 OS=Dictyostelium
discoideum GN=DDB_G0274527 PE=3 SV=1
Length = 475
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 32/237 (13%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG-------- 85
V+V++GFLG+GK+TL+NYILN HG +IAVI+N+ E+ ++ +I E E
Sbjct: 45 VSVLSGFLGSGKTTLLNYILNSNHGLKIAVIVNDMS-EVNIDSKLILENEFKITRTKATE 103
Query: 86 ALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD- 144
VE VE++NGCICCT++ L+ + +L + K R D++++E++G++ P P+A +
Sbjct: 104 KQVEAVVEMSNGCICCTMREDLLVEVTKLAKEK-RFDYLIIESSGISEPLPIAETFTFEI 162
Query: 145 ----DQLESAVRLDSIITVVDAKNLLFQI-------DKYRHLSSYPEA------IHQIAF 187
+ L+ +LD+++TVVD L Q DK + E + Q+ F
Sbjct: 163 DGSIENLKDYTKLDTMVTVVDCSTWLEQYQSGESLKDKDMQATDQDERSLVDLLLDQVEF 222
Query: 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244
++V++LNK DLVS ER + +E I IN A ++RS V L E+LN +D
Sbjct: 223 SNVILLNKCDLVSEER----VKTIEGLIKHINPEARLLRSTNSVVPLKEILNTGLFD 275
>sp|P94400|YCIC_BACSU Putative metal chaperone YciC OS=Bacillus subtilis (strain 168)
GN=yciC PE=2 SV=1
Length = 397
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 135/234 (57%), Gaps = 27/234 (11%)
Query: 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG--ALV 88
+ VTV++G+LGAGK+TL+N IL + G +IAVI+N+ E+ ++ ++ + EGG
Sbjct: 3 KIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMS-EVNIDAGLVKQ-EGGLSRTD 60
Query: 89 EEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQ- 146
E+ VE++NGCICCT++ L+ +E+L + R D+I++E+TG++ P P+A ++D++
Sbjct: 61 EKLVEMSNGCICCTLREDLLIEVEKLA-KDGRFDYIVIESTGISEPIPVAQTFSYIDEEM 119
Query: 147 ---LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA-------------IHQIAFADV 190
L +LD+++TVVDA L EA I QI F DV
Sbjct: 120 GIDLTKFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGEKDEREIADLLIDQIEFCDV 179
Query: 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244
+ILNK DLVS + L++LE + ++ A IRSV+ V E+L+ ++
Sbjct: 180 LILNKCDLVSEQ----ELEQLENVLRKLQPRARFIRSVKGNVKPQEILHTGLFN 229
>sp|Q9HZQ2|COBW_PSEAE Protein CobW OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 /
1C / PRS 101 / LMG 12228) GN=cobW PE=3 SV=1
Length = 375
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 131/231 (56%), Gaps = 29/231 (12%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW-- 91
VT++TGFLGAGK+TL+ ++L+ G+RIAVI+NEFGE +G++ ++ + G EE
Sbjct: 34 VTIVTGFLGAGKTTLLRHMLDNAEGRRIAVIVNEFGE-LGIDGEILKQCSIGCSEEEAQG 92
Query: 92 --VELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLE 148
ELANGC+CCTV+ + +LV R+ LD IL+ET+GLA P PL W ++
Sbjct: 93 RVFELANGCLCCTVQEEFFPVMRELVARRGDLDQILIETSGLALPKPLVQAFQW--PEIR 150
Query: 149 SAVRLDSIITVVDAKNLLF--------QIDKYR-------HLSSYPEAIH-QIAFADVVI 192
+A +D++ITVVD+ + Q+D+ R H S E Q+A AD+VI
Sbjct: 151 NACTVDAVITVVDSPAVAAGTFAAHPEQVDQQRRQDPNLDHESPLHELFEDQLASADLVI 210
Query: 193 LNKVDLVSPERSGDSLDELEKEIH-EINSLAHVIRSVRCQVDLSEVLNCRA 242
LNK D + E +L + EI E+ + ++ + R ++ L +L A
Sbjct: 211 LNKADQLDAE----ALARVRAEIAGELPAAVKIVEASRGELPLPVLLGLNA 257
>sp|P31521|P47K_PSECL 47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1
Length = 419
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 130/236 (55%), Gaps = 39/236 (16%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE----EIGVERAM-INEGEGGALV 88
VTV++GFLGAGK+TL+N IL + G R+AVI+N+ E V+R + ++ G
Sbjct: 12 VTVLSGFLGAGKTTLLNAILRNRQGLRVAVIVNDMSEVNLDAESVQRDVSLHRGR----- 66
Query: 89 EEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQ- 146
+E +E++NGCICCT++ L++ + L R++R D++L+E+TG++ P P+A +LD +
Sbjct: 67 DELIEMSNGCICCTLRADLLEQISDLA-RQQRFDYLLIESTGISEPMPVAETFAFLDTEG 125
Query: 147 --LESAVRLDSIITVVDAKNL---------LFQIDKYRHLSSYPEA---IHQIAFADVVI 192
L RLD+++TVVD + + D H S+ A I Q+ +A+V++
Sbjct: 126 FSLSELARLDTLVTVVDGSQFQALLESTDTVARADTEAHTSTRHLADLLIEQVEYANVIL 185
Query: 193 LNKVDLVSPERSGDSLDELEKEIHEI----NSLAHVIRSVRCQVDLSEVLNCRAYD 244
+NK DL+ + + +H I N A ++ V LS +L+ +D
Sbjct: 186 VNKRDLID--------EPGYQAVHAILAGLNPSARIMPMAHGNVALSSLLDTHLFD 233
>sp|P29937|COBW_PSEDE Protein CobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3
Length = 354
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 104/186 (55%), Gaps = 21/186 (11%)
Query: 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEE- 90
+ TVITGFLGAGK+T++ +L GKRI +I+NEFG+ +GV+ ++ A E+
Sbjct: 11 IPATVITGFLGAGKTTMIRNLLQNADGKRIGLIINEFGD-LGVDGDVLKGCGAEACTEDD 69
Query: 91 WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLE- 148
+EL NGCICCTV + + +L++R+ R DHI++ET+GLA P PL A+ W D + E
Sbjct: 70 IIELTNGCICCTVADDFIPTMTKLLERENRPDHIIIETSGLALPQPLIAAFNWPDIRSEV 129
Query: 149 --------------SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-QIAFADVVIL 193
+A R VDA L + D H S E Q+ AD+++L
Sbjct: 130 TVDGVVTVVDSAAVAAGRFADDHDKVDA--LRVEDDNLDHESPIEELFEDQLTAADLIVL 187
Query: 194 NKVDLV 199
NK DL+
Sbjct: 188 NKTDLI 193
>sp|P24203|YJIA_ECOLI Uncharacterized GTP-binding protein YjiA OS=Escherichia coli
(strain K12) GN=yjiA PE=1 SV=3
Length = 318
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 119/216 (55%), Gaps = 22/216 (10%)
Query: 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
+ VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFG E+ V+ +I G +
Sbjct: 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG-EVSVDDQLI-----GDRATQI 57
Query: 92 VELANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQL 147
L NGCICC+ + L AL L+ ++ D +++E TG+A+P P+ + + L
Sbjct: 58 KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 117
Query: 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDS 207
LD +I +VDA + Q++++ S Q+ +AD ++L K D+ +G++
Sbjct: 118 CQRYLLDGVIALVDAVHADEQMNQFTIAQS------QVGYADRILLTKTDV-----AGEA 166
Query: 208 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243
++L + + IN+ A V +DL + N +
Sbjct: 167 -EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGF 201
>sp|P33030|YEIR_ECOLI Uncharacterized protein YeiR OS=Escherichia coli (strain K12)
GN=yeiR PE=3 SV=2
Length = 328
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 96/170 (56%), Gaps = 14/170 (8%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWV 92
+ITGFLG+GK+T + ++L K ++ AV++NEFG E+G++ A++ + GAL++
Sbjct: 4 TNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFG-EVGIDGALL--ADSGALLK--- 57
Query: 93 ELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR 152
E+ GC+CC + L L+ R+ + D +L+E TGL +P + +L E +
Sbjct: 58 EIPGGCMCCVNGLPMQVGLNTLL-RQGKPDRLLIEPTGLGHPKQILDLL-TAPVYEPWID 115
Query: 153 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 202
L + + ++D + LL + +S Q+A AD+++ NK D +PE
Sbjct: 116 LRATLCILDPRLLLDEKS-----ASNENFRDQLAAADIIVANKSDRTTPE 160
>sp|A6NM15|CBWD7_HUMAN Putative COBW domain-containing protein 7 OS=Homo sapiens GN=CBWD7
PE=5 SV=3
Length = 247
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 140 VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199
+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK DLV
Sbjct: 1 MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
Query: 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245
PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 61 -PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 102
>sp|P22042|YTR2_SPIAU Uncharacterized protein in trpE 3'region (Fragment)
OS=Spirochaeta aurantia PE=4 SV=1
Length = 60
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70
S VTV+TGFLG+GK+TLVN +L + G R +++NEFGE
Sbjct: 7 STPVTVLTGFLGSGKTTLVNRLLKERPGTRFGLVVNEFGE 46
>sp|B2UPE7|HFLX_AKKM8 GTPase HflX OS=Akkermansia muciniphila (strain ATCC BAA-835)
GN=hflX PE=3 SV=1
Length = 437
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 117 RKERLDH----ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY 172
RK L H +L +T G P V LE AV D +I VVDA + +
Sbjct: 251 RKIELPHGQPLLLTDTVGFIRNLPHRLVEAFKSTLEEAVLADFLIQVVDASD----PEAV 306
Query: 173 RHLSSYPEAIHQIAFAD---VVILNKVDLVSPERSG 205
RH + E ++++ D +V+LNKVDLV ER G
Sbjct: 307 RHYETTLEVLNELGAGDKPMIVVLNKVDLVPEERRG 342
>sp|C6A0T3|CPGS_THESM Cyclic 2,3-diphosphoglycerate synthetase OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=cpgS PE=3 SV=1
Length = 434
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 97 GCICC---TVKHSLVQALEQLVQRKERL--DHILLETTGLANPAPLASVLWLDDQLESAV 151
GC C V S + + ++ E+L D ++LE +G PA V
Sbjct: 204 GCRRCGGGMVGFSFFDIVNKGIKLAEKLEGDIVILEGSGATFPA---------------V 248
Query: 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDEL 211
+ D ITVV A + I Y +I AD++++ D+VS E+ ++++
Sbjct: 249 KADKYITVVGATQRIEFIKSYF-------GPFRIGLADLIVITLADMVSKEK----IEKI 297
Query: 212 EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATVNP 249
+K I IN A + + LSE+ +A P
Sbjct: 298 QKIIESINPDAEIHLTAFKPRPLSEIKGKKAILVMTAP 335
>sp|A9KLX9|MNME_CLOPH tRNA modification GTPase MnmE OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=mnmE PE=3
SV=1
Length = 458
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 47/156 (30%)
Query: 20 EFSNSHENDD-VSVGV-TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA 77
E N+ EN + G+ TVI G AGKS+L+N + +G ERA
Sbjct: 207 ELINTSENGRMIKEGIRTVILGRPNAGKSSLLNLM-------------------VGEERA 247
Query: 78 MINEGEGGA--LVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
++ E G +EE V L C+ L++T G+ +
Sbjct: 248 IVTEIAGTTRDTIEETVFLNGLCLN------------------------LIDTAGIRETS 283
Query: 136 PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK 171
L L ++ L+SA D II V+DA L Q DK
Sbjct: 284 DLVEKLGVEKSLKSAKEADLIICVIDASTPLNQDDK 319
>sp|Q2JB14|PHNC_FRASC Phosphonates import ATP-binding protein PhnC OS=Frankia sp.
(strain CcI3) GN=phnC PE=3 SV=1
Length = 253
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 11 AVRIDETTHEFSNSHENDDVSVGV-----TVITGFLGAGKSTLVNYI--LNGKHGKRIAV 63
AVR + T F + D+VS V V+ G G+GKSTL+ ++ L+G R+
Sbjct: 3 AVRFEGVTKRFGQTLALDEVSFTVEPGEVVVLLGLSGSGKSTLLRHVDGLHGASAGRVIA 62
Query: 64 ILNEFGEEIG 73
+ + G+ G
Sbjct: 63 LGTDVGQARG 72
>sp|A8Z5Z5|SECA_SULMW Protein translocase subunit SecA OS=Sulcia muelleri (strain GWSS)
GN=secA PE=3 SV=1
Length = 1018
Score = 34.7 bits (78), Expect = 0.76, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 50 NYILNGKHGKRIAVILNEFGEE--IGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107
N +LN KH K+ A I+ E G+ + + M G + +E +L I T +H
Sbjct: 663 NNVLNAKHHKKEAYIIEEAGKSGIVTIATNMAGRGTDIKISDEVKKLGGLAIIGTERHD- 721
Query: 108 VQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVD 161
R+D L+ TG +P L L+D L LD I T++D
Sbjct: 722 ----------SRRIDRQLIGRTGRQGDPGSSKFYLSLEDDLMRIFGLDRISTILD 766
>sp|B2THS4|RSGA_CLOBB Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Eklund 17B / Type B) GN=rsgA PE=3 SV=1
Length = 290
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Query: 4 EEEDPPLAVRIDETTHE--FSNSHE-------NDDVSVGVTVITGFLGAGKSTLVNYILN 54
EEE + RI++ +E + N+ E + ++ +TV+ G GAGKSTL+N + N
Sbjct: 117 EEERENVKKRINDIGYEVLYINAKEGLGTDILKEKINGNITVLCGPSGAGKSTLINKLTN 176
Query: 55 GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114
+H +L G+ I G+ E +E++NG I T S ++ E
Sbjct: 177 KEH------MLT------GIVSEKIGRGKHTTRHSELIEVSNGYIVDTPGFSTLEIKE-- 222
Query: 115 VQRKERLDHILLE 127
+ KE L + E
Sbjct: 223 LMNKEDLKYCFPE 235
>sp|Q8ETB7|RSGA1_OCEIH Putative ribosome biogenesis GTPase RsgA 1 OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=rsgA1 PE=3 SV=1
Length = 351
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 21 FSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMI 79
+N HE+D V V+ G GAGKSTL+N +L K K +V ++ G R +
Sbjct: 187 LANIHEDDSV-----VLIGSSGAGKSTLINALLTEKVLKTGSVREDDKRGRHTTTHRELF 241
Query: 80 NEGEGGALVE 89
N GG +++
Sbjct: 242 NLPTGGVIID 251
>sp|B2V4B8|RSGA_CLOBA Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Alaska E43 / Type E3) GN=rsgA PE=3 SV=1
Length = 290
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 22/125 (17%)
Query: 4 EEEDPPLAVRIDETTHE--FSNSHE-------NDDVSVGVTVITGFLGAGKSTLVNYILN 54
EEE + RI++ +E + N+ E + ++ +TV+ G GAGKSTL+N + +
Sbjct: 117 EEERENVKKRINDIGYEVLYINAKEGLGTDILKEKINGNITVLCGPSGAGKSTLINKLTD 176
Query: 55 GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114
+H +L G+ I G+ E +E++NG I T S ++ +++L
Sbjct: 177 KEH------MLT------GIVSEKIGRGKHTTRHSELIEVSNGYIVDTPGFSTLE-IKEL 223
Query: 115 VQRKE 119
++++E
Sbjct: 224 MEKEE 228
>sp|Q0I447|RSGA_HAES1 Putative ribosome biogenesis GTPase RsgA OS=Haemophilus somnus
(strain 129Pt) GN=rsgA PE=3 SV=1
Length = 350
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 30 VSVGVTVITGFLGAGKSTLVNYIL---NGKHGKRIAVILNEFGEEIGVERAMINEGEGGA 86
+S G ++ G G GKS+L+NYIL N + GK V + G+ + + +GG
Sbjct: 207 LSEGTSIFVGQSGVGKSSLINYILPEVNAQTGKLSQV--SGLGQHTTTSSRLYHLSQGGN 264
Query: 87 LVE 89
L++
Sbjct: 265 LID 267
>sp|B0UT89|RSGA_HAES2 Putative ribosome biogenesis GTPase RsgA OS=Haemophilus somnus
(strain 2336) GN=rsgA PE=3 SV=1
Length = 350
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 30 VSVGVTVITGFLGAGKSTLVNYIL---NGKHGKRIAVILNEFGEEIGVERAMINEGEGGA 86
+S G ++ G G GKS+L+NYIL N + GK V + G+ + + +GG
Sbjct: 207 LSEGTSIFVGQSGVGKSSLINYILPEVNAQTGKLSQV--SGLGQHTTTSSRLYHLSQGGN 264
Query: 87 LVE 89
L++
Sbjct: 265 LID 267
>sp|Q9E6R1|HELI_GAHVM Probable ATP-dependent helicase UL5 homolog OS=Gallid herpesvirus
2 (strain Chicken/Md5/ATCC VR-987) GN=MDV017 PE=3 SV=1
Length = 858
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 8 PPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLV 49
PPL+ I+ + HE E D+ V +I+G G+GKST +
Sbjct: 44 PPLSYFIEASNHENPVELEARDLPFAVYLISGNAGSGKSTCI 85
>sp|Q9UT95|YL44_SCHPO Uncharacterized ABC transporter ATP-binding protein C323.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC323.04 PE=3 SV=1
Length = 487
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 36 VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIG 73
+TG G+GK+TL+ Y++ G H K A + FG+ IG
Sbjct: 294 ALTGSNGSGKTTLLAYVV-GDHPKLFASNIKFFGKSIG 330
>sp|Q038V7|ADDA_LACC3 ATP-dependent helicase/nuclease subunit A OS=Lactobacillus casei
(strain ATCC 334) GN=addA PE=3 SV=1
Length = 1234
Score = 32.3 bits (72), Expect = 3.6, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-------LFQIDKYRHL 175
H+LL+ LA P +AS+ L DQL + +I V AK++ F+ D R L
Sbjct: 1067 HLLLQLVDLAKPITMASLRALRDQLTTT----QVIAVDVAKHIDLTALIRFFETDLGRLL 1122
Query: 176 SSYPEAIHQ 184
+ P+ +H+
Sbjct: 1123 LAKPQQVHR 1131
>sp|Q9HNI8|PHNC_HALSA Phosphonates import ATP-binding protein PhnC OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=phnC PE=3 SV=1
Length = 280
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 36 VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER---AMINEGEGGALVEEWV 92
VI G GAGKSTL+ LNG + + GE + R MI + ++EE
Sbjct: 33 VILGESGAGKSTLLR-CLNGLTEPTTGSVKID-GEPVNGPRDDVGMIFQQHN--IIEEMT 88
Query: 93 ELANGCICCTVKHSLVQALEQLVQRKERLDHI-LLETTGLANPA 135
N + SLV++L Q R+E+LD + L+T GL + A
Sbjct: 89 AYTNALSGSLNRTSLVRSLFQWNDREEKLDALRALDTVGLLDDA 132
>sp|B3WEJ1|ADDA_LACCB ATP-dependent helicase/nuclease subunit A OS=Lactobacillus casei
(strain BL23) GN=addA PE=3 SV=1
Length = 1234
Score = 32.0 bits (71), Expect = 4.3, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-------LFQIDKYRHL 175
H+LL+ LA P +AS+ L DQL + +I V AK++ F+ D R L
Sbjct: 1067 HLLLQLVDLAKPITMASLRALRDQLTT----KQVIAVDVAKHIDLTALIRFFETDLGRLL 1122
Query: 176 SSYPEAIHQ 184
+ P+ +H+
Sbjct: 1123 LAKPQQVHR 1131
>sp|Q5HAY9|ERA_EHRRW GTPase Era OS=Ehrlichia ruminantium (strain Welgevonden) GN=era
PE=3 SV=1
Length = 296
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 174
V E + I ++T G+ +P + S ++++I +VD KN L Q H
Sbjct: 50 VSNHENVQLIFIDTPGIFSPKTKLEKFLVKHAWMSLKGIENVIVLVDVKNYLNQ-----H 104
Query: 175 LSSYPEAIHQIAFADVVILNKVDLV 199
L + I +++LNK+D+V
Sbjct: 105 LKKIIDRIKHSNLNAILVLNKIDIV 129
>sp|Q5FFN4|ERA_EHRRG GTPase Era OS=Ehrlichia ruminantium (strain Gardel) GN=era PE=3
SV=1
Length = 296
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 174
V E + I ++T G+ +P + S ++++I +VD KN L Q H
Sbjct: 50 VSNHENVQLIFIDTPGIFSPKTKLEKFLVKHAWMSLKGIENVIVLVDVKNYLNQ-----H 104
Query: 175 LSSYPEAIHQIAFADVVILNKVDLV 199
L + I +++LNK+D+V
Sbjct: 105 LKKIIDRIKHSNLNAILVLNKIDIV 129
>sp|Q9CEL9|UVRA_LACLA UvrABC system protein A OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=uvrA PE=3 SV=1
Length = 940
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 23 NSHENDDV--SVGV-TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAM 78
N+ +N DV +GV T +TG G+GKSTLVN IL K +A LN E+ G + +
Sbjct: 620 NNLQNLDVEFPMGVMTAVTGVSGSGKSTLVNSILK----KSLAQKLNHNSEKPGKHKKI 674
>sp|Q8P5H9|RSGA_XANCP Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rsgA PE=3 SV=1
Length = 363
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF-GEEIGVERAMINEGEGGALVE 89
V+ G GAGKSTL N +L + K AV N+ G RA+I G L++
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGRHTTTHRALIPLPSGACLID 261
>sp|B0RNZ3|RSGA_XANCB Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. campestris (strain B100) GN=rsgA PE=3 SV=1
Length = 363
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF-GEEIGVERAMINEGEGGALVE 89
V+ G GAGKSTL N +L + K AV N+ G RA+I G L++
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGRHTTTHRALIPLPSGACLID 261
>sp|Q4UYJ6|RSGA_XANC8 Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=rsgA PE=3 SV=1
Length = 363
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF-GEEIGVERAMINEGEGGALVE 89
V+ G GAGKSTL N +L + K AV N+ G RA+I G L++
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGRHTTTHRALIPLPSGACLID 261
>sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Bos taurus GN=CNP
PE=2 SV=2
Length = 400
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 36 VITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL 94
++ G G+GKSTL +I++ + G ++ + + I G G+ EE+ +L
Sbjct: 34 ILRGLPGSGKSTLARFIVDKYRDGTKM----------VSADSYKITPGARGSFSEEYKQL 83
Query: 95 ANGCICCTVKHSLVQALEQLVQRKERLDHIL 125
C + V L+ +ERL+ +
Sbjct: 84 DEDLAACCRRDFRVLVLDDTNHERERLEQLF 114
>sp|A1USS5|NDVA_BARBK Beta-(1-->2)glucan export ATP-binding/permease protein NdvA
OS=Bartonella bacilliformis (strain ATCC 35685 / KC583)
GN=ndvA PE=3 SV=1
Length = 595
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 11 AVRIDETTHEFSNSHE-----NDDVSVGVTV-ITGFLGAGKSTLVNYI 52
A++ T+EF NS + + +V G TV I G GAGK+TL+N +
Sbjct: 334 AIQFHHVTYEFPNSSQGVFDISFEVKAGQTVAIVGPTGAGKTTLINLL 381
>sp|P70864|NDVA_BARBA Beta-(1-->2)glucan export ATP-binding/permease protein NdvA
OS=Bartonella bacilliformis GN=ndvA PE=3 SV=2
Length = 595
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 11 AVRIDETTHEFSNSHE-----NDDVSVGVTV-ITGFLGAGKSTLVNYI 52
A++ T+EF NS + + +V G TV I G GAGK+TL+N +
Sbjct: 334 AIQFHHVTYEFPNSSQGVFDISFEVKAGQTVAIVGPTGAGKTTLINLL 381
>sp|Q8TVE5|IF2G_METKA Translation initiation factor 2 subunit gamma OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=eif2g PE=3 SV=1
Length = 412
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 147 LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL-NKVDLVSPERSG 205
L A +D+ I V+ A Q HL A+ I DV+++ NK+DLV+PE +
Sbjct: 101 LSGAAIMDAAILVIAANEPCPQPQTREHLM----ALEIIGTEDVIVVQNKIDLVTPEEAR 156
Query: 206 DSLDE----LEKEIH 216
+ ++ LE+E H
Sbjct: 157 EHYEQIVQFLEEETH 171
>sp|Q3BPG1|RSGA_XANC5 Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=rsgA PE=3 SV=1
Length = 363
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF-GEEIGVERAMINEGEGGALVE 89
V+ G GAGKSTL N +L + K AV N+ G RA+I G L++
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGRHTTTHRALIPLPSGACLID 261
>sp|Q8PGW9|RSGA_XANAC Putative ribosome biogenesis GTPase RsgA OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=rsgA PE=3 SV=1
Length = 363
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF-GEEIGVERAMINEGEGGALVE 89
V+ G GAGKSTL N +L + K AV N+ G RA+I G L++
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGRHTTTHRALIPLPSGACLID 261
>sp|O67615|SRP54_AQUAE Signal recognition particle protein OS=Aquifex aeolicus (strain
VF5) GN=ffh PE=3 SV=1
Length = 454
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 34/119 (28%)
Query: 26 ENDDVSVGVTVITGFLGAGKSTLVNYILN--GKHGKRIAVI------------LNEFGEE 71
E D+ G + G G GK+T + I N K G ++AV L E
Sbjct: 89 EKADLKKGTVLFVGLQGTGKTTTIGKIANLLKKGGHKVAVSSTDLRRPAAMLQLQRLAER 148
Query: 72 IGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTG 130
+GV EG G VE+A + ++E +D++LL+T G
Sbjct: 149 VGVPYYEFEEGLGA------VEIARRAVKRA--------------KEESVDYLLLDTAG 187
>sp|Q9KUW5|UVRA_VIBCH UvrABC system protein A OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=uvrA PE=3 SV=1
Length = 940
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 4 EEEDPPLAVRIDETTHEFSNSHENDDVSVGV---TVITGFLGAGKSTLVN 50
E+ P A + E N+ +N D+S+ V T +TG G+GKSTL+N
Sbjct: 601 EQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLIN 650
>sp|Q5WHR5|RUVB_BACSK Holliday junction ATP-dependent DNA helicase RuvB OS=Bacillus
clausii (strain KSM-K16) GN=ruvB PE=3 SV=1
Length = 333
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD----------DQLESAV 151
TVKH+L +E R+E LDH+LL LA+++ + +E +
Sbjct: 34 TVKHNLAVFMEAAKMREEALDHVLLYGPPGLGKTTLAAIIAAEMGGELRTTSGPAIERSG 93
Query: 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 192
L +I+T ++ ++LF ID+ L+ E + A D +
Sbjct: 94 DLAAILTALEPGDVLF-IDEIHRLNRTVEEVLYPAMEDFCL 133
>sp|B9DNL3|ERA_STACT GTPase Era OS=Staphylococcus carnosus (strain TM300) GN=era PE=3
SV=1
Length = 299
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 124 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183
I ++T G+ P + + +D++I +V+A + + D+Y E +
Sbjct: 57 IFVDTPGIHKPKHKLGDYMMKVAKNTLTEVDAVIFMVNANEEIGRGDEY-----IMEMLK 111
Query: 184 QIAFADVVILNKVDLVSPERSGDSLDELEKEIH 216
I +++NK+DLV P++ ++ EK +H
Sbjct: 112 NIKTPVFLVINKIDLVHPDQIMPIIESYEKHMH 144
>sp|Q8XZP8|CYSA_RALSO Sulfate/thiosulfate import ATP-binding protein CysA OS=Ralstonia
solanacearum (strain GMI1000) GN=cysA PE=3 SV=1
Length = 372
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGKHGKRIAVI 64
+++++ T F N DDVS+ +T + G G GK+TL+ I +H ++
Sbjct: 1 MSIQVQHVTKRFGNFVALDDVSLAFRQGELTALLGPSGCGKTTLLRIIAGLEHADAGTIL 60
Query: 65 LN 66
LN
Sbjct: 61 LN 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,646,043
Number of Sequences: 539616
Number of extensions: 4065176
Number of successful extensions: 18107
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 18015
Number of HSP's gapped (non-prelim): 118
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)