Query 025133
Match_columns 257
No_of_seqs 160 out of 1931
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2743 Cobalamin synthesis pr 100.0 4.2E-41 9E-46 282.5 13.6 218 25-246 50-267 (391)
2 COG0523 Putative GTPases (G3E 100.0 7E-40 1.5E-44 286.6 20.3 201 32-247 1-202 (323)
3 PRK11537 putative GTP-binding 100.0 8.8E-36 1.9E-40 261.8 20.2 197 30-244 2-202 (318)
4 TIGR02475 CobW cobalamin biosy 100.0 1.1E-34 2.3E-39 257.4 20.6 207 31-243 3-227 (341)
5 PF02492 cobW: CobW/HypB/UreG, 100.0 3.2E-34 7E-39 233.1 12.9 174 33-225 1-177 (178)
6 cd03112 CobW_like The function 100.0 1E-29 2.3E-34 202.6 16.4 154 33-198 1-158 (158)
7 COG1159 Era GTPase [General fu 99.9 4.7E-24 1E-28 181.1 11.2 179 29-256 3-186 (298)
8 PRK10463 hydrogenase nickel in 99.9 4.2E-23 9E-28 177.5 11.0 193 17-241 89-284 (290)
9 TIGR00073 hypB hydrogenase acc 99.9 1.4E-22 2.9E-27 168.6 13.0 188 22-241 12-202 (207)
10 TIGR00101 ureG urease accessor 99.9 3.1E-21 6.7E-26 159.3 15.3 183 34-241 3-191 (199)
11 TIGR00436 era GTP-binding prot 99.8 8.3E-19 1.8E-23 151.6 10.4 166 34-250 2-168 (270)
12 PRK00089 era GTPase Era; Revie 99.8 1.3E-18 2.9E-23 151.9 11.4 167 30-245 3-170 (292)
13 PF02421 FeoB_N: Ferrous iron 99.8 3.4E-19 7.4E-24 140.7 5.5 152 34-240 2-155 (156)
14 COG1160 Predicted GTPases [Gen 99.8 1.9E-18 4.1E-23 154.5 10.7 159 33-245 4-164 (444)
15 COG0378 HypB Ni2+-binding GTPa 99.8 3.5E-18 7.6E-23 137.1 10.2 181 32-241 13-196 (202)
16 PRK09435 membrane ATPase/prote 99.8 2.4E-17 5.1E-22 145.3 16.0 183 31-241 55-255 (332)
17 COG0218 Predicted GTPase [Gene 99.8 8.3E-18 1.8E-22 136.0 11.1 176 19-242 11-193 (200)
18 PRK15494 era GTPase Era; Provi 99.7 1.2E-17 2.5E-22 148.7 11.2 172 32-254 52-228 (339)
19 PF03308 ArgK: ArgK protein; 99.7 2.6E-17 5.6E-22 138.2 9.3 181 31-241 28-225 (266)
20 COG1160 Predicted GTPases [Gen 99.7 4.2E-17 9.1E-22 146.0 10.7 164 32-243 178-348 (444)
21 COG0486 ThdF Predicted GTPase 99.7 8.1E-17 1.8E-21 144.5 9.2 163 22-241 206-371 (454)
22 cd04163 Era Era subfamily. Er 99.7 2.3E-16 5E-21 124.6 10.7 161 32-241 3-164 (168)
23 COG1703 ArgK Putative periplas 99.7 1.2E-15 2.7E-20 129.8 13.9 182 30-241 49-249 (323)
24 PRK12298 obgE GTPase CgtA; Rev 99.7 3.7E-16 8E-21 141.2 9.5 164 34-246 161-333 (390)
25 TIGR03598 GTPase_YsxC ribosome 99.6 1.1E-15 2.3E-20 124.1 10.8 168 18-235 4-179 (179)
26 COG2262 HflX GTPases [General 99.6 3.5E-15 7.6E-20 131.9 8.3 162 27-243 187-353 (411)
27 PRK13768 GTPase; Provisional 99.6 3E-15 6.6E-20 128.1 7.5 203 32-242 2-243 (253)
28 KOG1423 Ras-like GTPase ERA [C 99.6 1.6E-14 3.4E-19 123.0 10.9 180 29-257 69-286 (379)
29 KOG1532 GTPase XAB1, interacts 99.6 1.7E-15 3.6E-20 127.2 4.7 211 31-245 18-263 (366)
30 PRK12299 obgE GTPase CgtA; Rev 99.6 5.8E-15 1.3E-19 130.9 7.4 161 33-244 159-326 (335)
31 PF03029 ATP_bind_1: Conserved 99.6 1E-15 2.2E-20 129.6 2.4 199 37-241 1-232 (238)
32 TIGR03156 GTP_HflX GTP-binding 99.6 2.7E-14 5.9E-19 127.5 11.3 156 30-241 187-347 (351)
33 PRK00093 GTP-binding protein D 99.6 1.2E-14 2.7E-19 133.7 9.1 161 31-241 172-339 (435)
34 cd01894 EngA1 EngA1 subfamily. 99.5 2.5E-14 5.5E-19 112.4 9.5 152 36-241 1-153 (157)
35 cd01895 EngA2 EngA2 subfamily. 99.5 2.9E-14 6.4E-19 113.5 9.4 161 33-241 3-170 (174)
36 TIGR00750 lao LAO/AO transport 99.5 2E-13 4.3E-18 119.8 15.4 187 31-242 33-234 (300)
37 PRK12296 obgE GTPase CgtA; Rev 99.5 1.1E-14 2.5E-19 134.2 7.3 159 33-241 160-335 (500)
38 cd01898 Obg Obg subfamily. Th 99.5 9E-14 1.9E-18 111.1 10.5 155 35-241 3-166 (170)
39 PRK11058 GTPase HflX; Provisio 99.5 1.1E-13 2.3E-18 126.6 12.3 161 30-244 195-360 (426)
40 TIGR02729 Obg_CgtA Obg family 99.5 5.2E-14 1.1E-18 124.7 9.6 160 33-241 158-324 (329)
41 TIGR03594 GTPase_EngA ribosome 99.5 5.1E-14 1.1E-18 129.3 9.9 157 35-245 2-159 (429)
42 TIGR03594 GTPase_EngA ribosome 99.5 4.5E-14 9.8E-19 129.7 8.6 161 32-241 172-339 (429)
43 cd00881 GTP_translation_factor 99.5 9.7E-14 2.1E-18 112.5 9.4 112 120-244 61-185 (189)
44 PRK03003 GTP-binding protein D 99.5 6.9E-14 1.5E-18 129.9 9.6 161 31-245 37-198 (472)
45 COG1084 Predicted GTPase [Gene 99.5 8E-14 1.7E-18 120.1 8.8 161 29-236 165-326 (346)
46 PRK12297 obgE GTPase CgtA; Rev 99.5 8E-14 1.7E-18 126.9 9.1 157 34-242 160-323 (424)
47 PRK03003 GTP-binding protein D 99.5 7.8E-14 1.7E-18 129.6 8.9 165 31-242 210-378 (472)
48 PF10662 PduV-EutP: Ethanolami 99.5 1.5E-13 3.3E-18 106.5 8.9 101 125-241 40-141 (143)
49 cd04171 SelB SelB subfamily. 99.5 2E-13 4.3E-18 108.1 9.9 108 121-241 51-161 (164)
50 PRK00093 GTP-binding protein D 99.5 1.7E-13 3.7E-18 126.1 10.6 157 33-243 2-159 (435)
51 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.4E-13 3.1E-18 108.0 8.4 148 34-241 3-152 (157)
52 PRK05291 trmE tRNA modificatio 99.5 1.1E-13 2.3E-18 127.7 8.2 151 33-243 216-367 (449)
53 PRK09518 bifunctional cytidyla 99.5 1.1E-13 2.4E-18 134.3 8.5 163 31-243 449-618 (712)
54 cd01881 Obg_like The Obg-like 99.5 6E-14 1.3E-18 112.5 5.4 117 120-241 43-172 (176)
55 cd00880 Era_like Era (E. coli 99.5 1.5E-13 3.3E-18 107.1 7.3 112 120-241 44-159 (163)
56 PRK09518 bifunctional cytidyla 99.5 2.8E-13 6.1E-18 131.6 10.2 161 30-244 273-434 (712)
57 cd01878 HflX HflX subfamily. 99.5 2.9E-13 6.3E-18 111.9 8.9 158 30-242 39-201 (204)
58 PRK00454 engB GTP-binding prot 99.4 8.6E-13 1.9E-17 108.1 11.2 166 26-241 18-189 (196)
59 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 9.2E-13 2E-17 104.9 10.9 104 120-241 49-161 (168)
60 KOG1489 Predicted GTP-binding 99.4 1E-13 2.2E-18 118.7 4.6 162 30-241 194-362 (366)
61 KOG1191 Mitochondrial GTPase [ 99.4 2.5E-13 5.4E-18 122.2 6.8 160 33-243 269-447 (531)
62 cd01879 FeoB Ferrous iron tran 99.4 6E-13 1.3E-17 104.8 8.1 108 121-241 43-152 (158)
63 cd01876 YihA_EngB The YihA (En 99.4 1.9E-12 4E-17 102.4 10.7 114 122-241 46-166 (170)
64 cd04160 Arfrp1 Arfrp1 subfamil 99.4 6.7E-13 1.5E-17 105.8 8.2 107 120-241 49-164 (167)
65 PRK09866 hypothetical protein; 99.4 3.3E-12 7.1E-17 119.4 13.8 116 120-246 229-353 (741)
66 cd01889 SelB_euk SelB subfamil 99.4 7.8E-13 1.7E-17 108.5 8.4 110 120-242 67-182 (192)
67 cd01897 NOG NOG1 is a nucleola 99.4 1.1E-12 2.4E-17 104.6 8.3 157 33-241 1-163 (168)
68 PF01926 MMR_HSR1: 50S ribosom 99.4 7.8E-13 1.7E-17 99.6 6.7 114 35-195 2-116 (116)
69 COG0536 Obg Predicted GTPase [ 99.4 5E-13 1.1E-17 115.7 6.2 162 35-241 162-328 (369)
70 PRK15467 ethanolamine utilizat 99.4 2.2E-12 4.8E-17 102.7 9.4 102 125-244 41-145 (158)
71 TIGR02528 EutP ethanolamine ut 99.4 2.2E-12 4.7E-17 100.3 8.9 102 124-241 38-140 (142)
72 TIGR00231 small_GTP small GTP- 99.4 6.3E-12 1.4E-16 97.8 10.5 110 121-241 50-159 (161)
73 PRK09554 feoB ferrous iron tra 99.4 2E-12 4.4E-17 125.7 9.0 155 33-242 4-164 (772)
74 PF00009 GTP_EFTU: Elongation 99.4 2.2E-12 4.7E-17 105.5 7.8 111 118-242 67-183 (188)
75 cd01884 EF_Tu EF-Tu subfamily. 99.3 8E-12 1.7E-16 102.9 10.3 104 119-235 63-172 (195)
76 TIGR00450 mnmE_trmE_thdF tRNA 99.3 4.4E-12 9.5E-17 116.6 9.4 122 33-201 204-325 (442)
77 cd04165 GTPBP1_like GTPBP1-lik 99.3 1.7E-11 3.7E-16 103.1 12.1 112 119-241 82-218 (224)
78 cd03114 ArgK-like The function 99.3 5.3E-11 1.2E-15 93.7 13.8 141 34-197 1-148 (148)
79 KOG1534 Putative transcription 99.3 1.4E-12 3.1E-17 105.8 4.3 160 35-201 6-179 (273)
80 PRK04213 GTP-binding protein; 99.3 9.8E-12 2.1E-16 102.4 9.0 166 31-246 8-192 (201)
81 cd04166 CysN_ATPS CysN_ATPS su 99.3 9.2E-12 2E-16 103.5 8.4 108 119-239 75-187 (208)
82 cd01888 eIF2_gamma eIF2-gamma 99.3 7E-12 1.5E-16 103.9 7.5 116 121-249 83-202 (203)
83 COG0370 FeoB Fe2+ transport sy 99.3 5.5E-12 1.2E-16 118.1 7.2 155 33-243 4-161 (653)
84 smart00178 SAR Sar1p-like memb 99.3 1.2E-11 2.7E-16 100.7 8.2 149 33-241 18-180 (184)
85 cd04154 Arl2 Arl2 subfamily. 99.3 1.6E-11 3.5E-16 98.8 8.3 106 121-241 58-170 (173)
86 cd01890 LepA LepA subfamily. 99.3 7.2E-11 1.6E-15 95.1 11.3 109 120-244 66-175 (179)
87 TIGR00437 feoB ferrous iron tr 99.2 1.1E-11 2.3E-16 117.9 7.2 148 39-242 1-151 (591)
88 cd00878 Arf_Arl Arf (ADP-ribos 99.2 3.4E-11 7.3E-16 95.1 8.7 107 120-241 42-155 (158)
89 cd01861 Rab6 Rab6 subfamily. 99.2 5.1E-11 1.1E-15 94.2 9.7 104 122-241 50-157 (161)
90 cd04157 Arl6 Arl6 subfamily. 99.2 6.6E-11 1.4E-15 93.5 10.3 107 120-241 44-159 (162)
91 cd01886 EF-G Elongation factor 99.2 3.8E-11 8.1E-16 103.8 9.2 110 119-243 62-173 (270)
92 cd00154 Rab Rab family. Rab G 99.2 7.8E-11 1.7E-15 92.0 10.3 105 121-241 49-157 (159)
93 cd04156 ARLTS1 ARLTS1 subfamil 99.2 1.8E-11 3.8E-16 96.8 6.5 106 121-241 44-157 (160)
94 cd04139 RalA_RalB RalA/RalB su 99.2 4.1E-11 8.8E-16 94.8 8.6 106 121-241 48-157 (164)
95 cd04159 Arl10_like Arl10-like 99.2 2.1E-11 4.6E-16 95.4 6.7 106 121-241 44-156 (159)
96 cd01864 Rab19 Rab19 subfamily. 99.2 1.1E-10 2.3E-15 93.0 10.8 107 121-241 52-161 (165)
97 cd04119 RJL RJL (RabJ-Like) su 99.2 2.9E-11 6.2E-16 95.9 7.4 105 121-241 49-162 (168)
98 cd04151 Arl1 Arl1 subfamily. 99.2 4.3E-11 9.3E-16 94.7 8.1 106 121-241 43-155 (158)
99 cd04158 ARD1 ARD1 subfamily. 99.2 2.7E-11 5.8E-16 97.2 6.8 111 120-246 42-161 (169)
100 cd04145 M_R_Ras_like M-Ras/R-R 99.2 3.1E-10 6.8E-15 89.8 12.9 105 121-241 50-159 (164)
101 cd04114 Rab30 Rab30 subfamily. 99.2 1.8E-10 4E-15 91.8 11.5 106 121-241 56-164 (169)
102 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 7.5E-11 1.6E-15 97.1 9.5 166 34-247 2-185 (196)
103 cd01891 TypA_BipA TypA (tyrosi 99.2 8.9E-11 1.9E-15 96.4 9.9 104 120-237 64-173 (194)
104 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.2 1.5E-10 3.1E-15 94.3 11.0 110 121-242 52-166 (183)
105 cd01863 Rab18 Rab18 subfamily. 99.2 6.7E-11 1.4E-15 93.6 8.7 104 121-241 49-157 (161)
106 cd04104 p47_IIGP_like p47 (47- 99.2 7.1E-11 1.5E-15 97.4 8.9 116 121-246 52-184 (197)
107 cd01862 Rab7 Rab7 subfamily. 99.2 2.7E-10 5.8E-15 90.9 12.0 106 122-242 50-163 (172)
108 cd04101 RabL4 RabL4 (Rab-like4 99.2 1.4E-10 3E-15 92.1 10.2 105 121-241 52-159 (164)
109 smart00173 RAS Ras subfamily o 99.2 5.8E-11 1.3E-15 94.2 8.0 106 121-242 48-158 (164)
110 smart00175 RAB Rab subfamily o 99.2 2.5E-10 5.4E-15 90.3 11.4 104 122-241 50-157 (164)
111 cd04155 Arl3 Arl3 subfamily. 99.2 3E-11 6.6E-16 96.8 6.1 150 32-241 14-170 (173)
112 cd04142 RRP22 RRP22 subfamily. 99.2 1.8E-10 3.8E-15 95.2 10.8 114 121-242 49-170 (198)
113 cd04113 Rab4 Rab4 subfamily. 99.2 1.6E-10 3.6E-15 91.4 10.2 105 121-241 49-157 (161)
114 PF00448 SRP54: SRP54-type pro 99.2 4E-10 8.6E-15 92.8 12.7 174 33-238 2-183 (196)
115 PRK14974 cell division protein 99.2 5E-10 1.1E-14 99.2 14.2 181 31-239 139-323 (336)
116 cd04137 RheB Rheb (Ras Homolog 99.2 5.2E-11 1.1E-15 96.2 7.1 108 121-243 49-160 (180)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 8.5E-11 1.8E-15 94.8 8.3 107 120-241 58-171 (174)
118 cd04138 H_N_K_Ras_like H-Ras/N 99.2 8.5E-11 1.8E-15 92.6 8.1 102 123-241 51-157 (162)
119 PRK10512 selenocysteinyl-tRNA- 99.2 6.2E-11 1.3E-15 113.0 8.6 109 122-243 52-163 (614)
120 KOG1533 Predicted GTPase [Gene 99.2 5.1E-12 1.1E-16 104.1 0.9 162 35-203 5-180 (290)
121 cd01866 Rab2 Rab2 subfamily. 99.2 3.4E-10 7.3E-15 90.6 11.3 101 122-241 54-161 (168)
122 cd04175 Rap1 Rap1 subgroup. T 99.2 1.2E-10 2.6E-15 92.5 8.7 106 121-242 49-159 (164)
123 cd00157 Rho Rho (Ras homology) 99.2 1.4E-10 3.1E-15 92.4 8.9 109 121-241 48-168 (171)
124 TIGR01425 SRP54_euk signal rec 99.2 4.8E-10 1E-14 101.9 13.3 148 31-201 99-254 (429)
125 cd01860 Rab5_related Rab5-rela 99.2 3E-10 6.5E-15 89.9 10.6 105 121-241 50-158 (163)
126 cd04136 Rap_like Rap-like subf 99.2 9.4E-11 2E-15 92.8 7.4 105 121-241 49-158 (163)
127 cd01893 Miro1 Miro1 subfamily. 99.2 2.2E-10 4.7E-15 91.5 9.5 111 120-241 46-159 (166)
128 cd04109 Rab28 Rab28 subfamily. 99.2 5E-10 1.1E-14 93.5 12.0 107 121-242 50-162 (215)
129 cd01868 Rab11_like Rab11-like. 99.1 2.5E-10 5.3E-15 90.8 9.5 105 121-241 52-160 (165)
130 cd00876 Ras Ras family. The R 99.1 9.7E-11 2.1E-15 92.1 7.1 105 121-241 47-156 (160)
131 cd01865 Rab3 Rab3 subfamily. 99.1 4E-10 8.7E-15 89.8 10.5 106 121-242 50-159 (165)
132 TIGR00487 IF-2 translation ini 99.1 4.4E-10 9.5E-15 106.6 12.4 155 29-242 84-246 (587)
133 cd04149 Arf6 Arf6 subfamily. 99.1 1.5E-10 3.2E-15 93.0 7.9 106 121-241 53-165 (168)
134 TIGR00475 selB selenocysteine- 99.1 8.6E-11 1.9E-15 111.6 7.5 108 121-241 50-161 (581)
135 cd04124 RabL2 RabL2 subfamily. 99.1 4.4E-10 9.6E-15 89.3 10.4 102 121-241 49-153 (161)
136 cd01850 CDC_Septin CDC/Septin. 99.1 3.6E-10 7.8E-15 98.0 10.5 62 151-218 113-175 (276)
137 cd04150 Arf1_5_like Arf1-Arf5- 99.1 3.1E-10 6.7E-15 90.2 9.3 106 121-241 44-156 (159)
138 TIGR00064 ftsY signal recognit 99.1 1.9E-09 4.1E-14 93.3 14.7 185 30-239 70-261 (272)
139 cd04110 Rab35 Rab35 subfamily. 99.1 7.5E-10 1.6E-14 91.3 11.8 104 122-241 56-162 (199)
140 cd04140 ARHI_like ARHI subfami 99.1 3.6E-10 7.9E-15 90.1 9.5 105 121-241 49-160 (165)
141 cd00879 Sar1 Sar1 subfamily. 99.1 1.4E-10 3E-15 94.6 7.2 106 121-241 63-186 (190)
142 PRK05306 infB translation init 99.1 5.1E-10 1.1E-14 108.8 12.1 155 29-243 287-449 (787)
143 CHL00071 tufA elongation facto 99.1 3.1E-10 6.6E-15 103.8 10.0 101 119-232 73-179 (409)
144 cd04107 Rab32_Rab38 Rab38/Rab3 99.1 2.7E-09 5.8E-14 88.1 14.8 107 121-242 50-164 (201)
145 cd04127 Rab27A Rab27a subfamil 99.1 1.1E-09 2.5E-14 88.3 12.2 106 121-242 63-173 (180)
146 PRK12317 elongation factor 1-a 99.1 1.6E-10 3.6E-15 106.1 8.1 107 119-238 82-197 (425)
147 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 7.9E-10 1.7E-14 88.0 11.0 104 122-241 52-159 (166)
148 PRK10416 signal recognition pa 99.1 3.3E-09 7.3E-14 93.6 16.0 184 31-238 113-302 (318)
149 cd04106 Rab23_lke Rab23-like s 99.1 5.4E-10 1.2E-14 88.4 9.8 105 121-241 51-158 (162)
150 cd04112 Rab26 Rab26 subfamily. 99.1 4.6E-10 1E-14 91.9 9.7 106 121-242 50-159 (191)
151 PRK11889 flhF flagellar biosyn 99.1 2.3E-09 5E-14 96.0 14.7 176 32-238 241-421 (436)
152 TIGR00491 aIF-2 translation in 99.1 4.9E-10 1.1E-14 106.2 10.9 133 30-200 2-135 (590)
153 PLN03118 Rab family protein; P 99.1 2.1E-10 4.6E-15 95.4 7.5 109 121-244 62-175 (211)
154 cd04147 Ras_dva Ras-dva subfam 99.1 2.8E-10 6E-15 93.8 8.0 108 122-243 48-160 (198)
155 CHL00189 infB translation init 99.1 4E-10 8.6E-15 108.7 10.1 157 30-242 242-406 (742)
156 cd01882 BMS1 Bms1. Bms1 is an 99.1 8.2E-10 1.8E-14 93.0 10.8 138 33-231 40-181 (225)
157 cd04118 Rab24 Rab24 subfamily. 99.1 5.7E-10 1.2E-14 91.2 9.2 106 123-242 52-162 (193)
158 cd01896 DRG The developmentall 99.1 3E-10 6.5E-15 96.2 7.7 46 188-243 178-223 (233)
159 PRK12736 elongation factor Tu; 99.1 8.6E-10 1.9E-14 100.3 11.1 99 120-231 74-178 (394)
160 COG1163 DRG Predicted GTPase [ 99.1 5.7E-10 1.2E-14 96.2 9.2 164 28-244 59-287 (365)
161 cd04123 Rab21 Rab21 subfamily. 99.1 8.8E-10 1.9E-14 86.8 9.6 105 122-241 50-157 (162)
162 cd01867 Rab8_Rab10_Rab13_like 99.1 1.8E-09 3.9E-14 86.2 11.4 105 121-241 52-160 (167)
163 cd01883 EF1_alpha Eukaryotic e 99.1 3.5E-10 7.5E-15 94.8 7.4 109 119-235 75-194 (219)
164 cd04168 TetM_like Tet(M)-like 99.1 2.7E-09 5.9E-14 90.5 12.8 83 119-215 62-144 (237)
165 cd00877 Ran Ran (Ras-related n 99.1 5.2E-10 1.1E-14 89.5 7.9 102 121-243 49-156 (166)
166 cd04116 Rab9 Rab9 subfamily. 99.1 2.1E-09 4.6E-14 85.9 11.1 105 121-241 54-166 (170)
167 PRK05124 cysN sulfate adenylyl 99.1 8.2E-10 1.8E-14 102.6 9.9 104 119-237 105-216 (474)
168 cd04161 Arl2l1_Arl13_like Arl2 99.0 2.7E-10 5.9E-15 91.2 5.6 106 120-240 42-163 (167)
169 cd00882 Ras_like_GTPase Ras-li 99.0 4.4E-10 9.5E-15 86.3 6.5 108 120-240 44-154 (157)
170 cd03115 SRP The signal recogni 99.0 4.9E-09 1.1E-13 84.5 12.9 148 34-202 2-155 (173)
171 cd01892 Miro2 Miro2 subfamily. 99.0 2.9E-09 6.3E-14 85.5 11.5 105 122-243 55-163 (169)
172 smart00177 ARF ARF-like small 99.0 4.8E-10 1E-14 90.6 6.9 107 120-241 56-169 (175)
173 cd04105 SR_beta Signal recogni 99.0 2.1E-09 4.6E-14 89.0 10.9 75 120-203 47-126 (203)
174 PTZ00133 ADP-ribosylation fact 99.0 6.2E-10 1.4E-14 90.6 7.5 107 121-242 61-174 (182)
175 PRK12726 flagellar biosynthesi 99.0 1.2E-08 2.7E-13 91.0 16.2 169 31-231 205-379 (407)
176 PRK00771 signal recognition pa 99.0 1.9E-09 4.1E-14 98.7 11.3 150 31-201 94-247 (437)
177 PRK00049 elongation factor Tu; 99.0 1.5E-09 3.2E-14 98.9 10.4 100 120-232 74-179 (396)
178 cd04177 RSR1 RSR1 subgroup. R 99.0 1.1E-09 2.3E-14 87.6 8.3 105 122-241 50-159 (168)
179 KOG0410 Predicted GTP binding 99.0 2.7E-10 5.9E-15 98.1 5.0 156 25-242 171-337 (410)
180 smart00174 RHO Rho (Ras homolo 99.0 2.3E-09 5E-14 85.9 10.0 110 121-242 46-168 (174)
181 cd04122 Rab14 Rab14 subfamily. 99.0 3.1E-09 6.8E-14 84.6 10.7 105 121-241 51-159 (166)
182 cd04132 Rho4_like Rho4-like su 99.0 5.2E-09 1.1E-13 85.0 12.2 111 121-242 49-163 (187)
183 cd04170 EF-G_bact Elongation f 99.0 3.2E-09 7E-14 91.6 11.5 70 119-201 62-131 (268)
184 PRK06731 flhF flagellar biosyn 99.0 1E-08 2.2E-13 88.3 14.4 193 14-237 58-254 (270)
185 cd01870 RhoA_like RhoA-like su 99.0 1.9E-09 4.1E-14 86.5 9.3 110 121-241 49-170 (175)
186 PTZ00369 Ras-like protein; Pro 99.0 3.3E-09 7.1E-14 86.7 10.7 105 122-242 54-163 (189)
187 PRK04004 translation initiatio 99.0 1.7E-09 3.6E-14 102.8 10.0 131 29-199 3-136 (586)
188 PRK12735 elongation factor Tu; 99.0 4.3E-09 9.4E-14 95.8 12.1 100 120-232 74-179 (396)
189 cd04144 Ras2 Ras2 subfamily. 99.0 2.5E-09 5.4E-14 87.5 9.4 106 122-243 48-160 (190)
190 PLN03127 Elongation factor Tu; 99.0 1.6E-09 3.4E-14 100.0 9.1 71 120-203 123-194 (447)
191 smart00053 DYNc Dynamin, GTPas 99.0 2.8E-09 6E-14 90.3 9.8 78 120-202 124-208 (240)
192 cd04143 Rhes_like Rhes_like su 99.0 4.9E-09 1.1E-13 89.5 11.5 107 121-242 48-167 (247)
193 cd04108 Rab36_Rab34 Rab34/Rab3 99.0 3.7E-09 8E-14 85.0 9.9 108 121-242 49-161 (170)
194 PF09439 SRPRB: Signal recogni 99.0 1.2E-09 2.6E-14 88.3 6.9 122 31-203 2-129 (181)
195 PLN00223 ADP-ribosylation fact 99.0 3.7E-09 8.1E-14 85.9 9.9 107 121-242 61-174 (181)
196 cd04148 RGK RGK subfamily. Th 99.0 8.7E-09 1.9E-13 86.5 12.4 105 121-242 50-159 (221)
197 cd04111 Rab39 Rab39 subfamily. 99.0 2.6E-09 5.7E-14 89.0 9.2 106 121-242 52-162 (211)
198 cd04130 Wrch_1 Wrch-1 subfamil 99.0 7E-09 1.5E-13 83.3 11.3 108 122-241 49-169 (173)
199 PRK00007 elongation factor G; 99.0 1.1E-09 2.4E-14 106.3 7.8 71 119-202 73-143 (693)
200 PRK10867 signal recognition pa 99.0 9.3E-09 2E-13 94.0 13.3 152 31-201 99-255 (433)
201 cd04120 Rab12 Rab12 subfamily. 99.0 8.4E-09 1.8E-13 85.4 11.9 107 121-242 49-159 (202)
202 cd04162 Arl9_Arfrp2_like Arl9/ 99.0 3.6E-09 7.9E-14 84.5 9.4 106 120-240 43-160 (164)
203 cd04146 RERG_RasL11_like RERG/ 99.0 5.5E-09 1.2E-13 83.1 10.4 104 122-241 48-159 (165)
204 cd04125 RabA_like RabA-like su 99.0 5.5E-09 1.2E-13 85.2 10.6 105 121-241 49-157 (188)
205 cd04169 RF3 RF3 subfamily. Pe 99.0 1.4E-08 3E-13 87.7 13.3 71 119-202 69-139 (267)
206 cd04176 Rap2 Rap2 subgroup. T 99.0 2.8E-09 6E-14 84.5 8.3 104 122-241 50-158 (163)
207 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.0 3.2E-09 7E-14 85.5 8.6 106 121-242 50-160 (172)
208 cd04115 Rab33B_Rab33A Rab33B/R 99.0 1.1E-08 2.4E-13 81.9 11.7 105 121-241 51-164 (170)
209 PRK14722 flhF flagellar biosyn 99.0 2.1E-08 4.5E-13 89.9 14.3 167 33-231 138-318 (374)
210 PRK12739 elongation factor G; 99.0 2E-09 4.3E-14 104.5 8.5 135 30-202 6-141 (691)
211 cd04135 Tc10 TC10 subfamily. 98.9 2.9E-09 6.3E-14 85.3 7.9 108 122-241 49-169 (174)
212 PRK05506 bifunctional sulfate 98.9 2.6E-09 5.5E-14 102.8 8.5 105 119-236 102-211 (632)
213 COG0552 FtsY Signal recognitio 98.9 1.4E-08 3.1E-13 88.4 12.2 155 31-200 138-298 (340)
214 PLN03110 Rab GTPase; Provision 98.9 8.3E-09 1.8E-13 86.3 10.2 106 121-242 61-170 (216)
215 cd04167 Snu114p Snu114p subfam 98.9 2.4E-09 5.1E-14 89.3 6.8 90 120-222 70-162 (213)
216 COG0541 Ffh Signal recognition 98.9 1.5E-08 3.3E-13 90.9 12.2 166 15-201 80-254 (451)
217 TIGR00484 EF-G translation elo 98.9 7.4E-09 1.6E-13 100.6 11.1 134 31-202 9-143 (689)
218 cd04121 Rab40 Rab40 subfamily. 98.9 1.3E-08 2.9E-13 83.3 10.8 119 121-255 55-183 (189)
219 PF00350 Dynamin_N: Dynamin fa 98.9 1.5E-09 3.3E-14 86.6 5.0 69 120-196 100-168 (168)
220 TIGR00959 ffh signal recogniti 98.9 2.2E-08 4.7E-13 91.6 13.0 149 32-201 99-254 (428)
221 PRK14723 flhF flagellar biosyn 98.9 3.1E-08 6.7E-13 95.6 14.5 145 33-201 186-338 (767)
222 TIGR00485 EF-Tu translation el 98.9 5.3E-09 1.1E-13 95.2 8.9 99 120-231 74-178 (394)
223 cd01899 Ygr210 Ygr210 subfamil 98.9 8.4E-09 1.8E-13 91.0 9.9 57 187-250 215-273 (318)
224 PLN03126 Elongation factor Tu; 98.9 7.4E-09 1.6E-13 96.1 9.8 99 120-231 143-247 (478)
225 cd04126 Rab20 Rab20 subfamily. 98.9 2.4E-08 5.3E-13 83.7 12.0 110 121-242 44-186 (220)
226 PF00025 Arf: ADP-ribosylation 98.9 5.1E-09 1.1E-13 84.7 7.6 151 31-241 13-171 (175)
227 PRK12723 flagellar biosynthesi 98.9 6E-08 1.3E-12 87.6 15.2 165 31-230 173-348 (388)
228 TIGR02034 CysN sulfate adenyly 98.9 7.9E-09 1.7E-13 94.4 9.6 103 119-236 78-187 (406)
229 COG1419 FlhF Flagellar GTP-bin 98.9 5.5E-08 1.2E-12 87.0 14.6 173 31-239 202-383 (407)
230 COG4917 EutP Ethanolamine util 98.9 5.6E-09 1.2E-13 78.1 6.8 100 124-241 40-141 (148)
231 TIGR00483 EF-1_alpha translati 98.9 5.7E-09 1.2E-13 96.0 8.5 108 119-236 83-197 (426)
232 cd01885 EF2 EF2 (for archaea a 98.9 5.5E-09 1.2E-13 87.7 7.6 67 120-199 72-138 (222)
233 cd01871 Rac1_like Rac1-like su 98.9 3E-08 6.5E-13 80.0 11.5 109 121-241 49-170 (174)
234 cd04128 Spg1 Spg1p. Spg1p (se 98.9 3E-08 6.5E-13 80.7 11.6 108 121-242 49-162 (182)
235 cd04117 Rab15 Rab15 subfamily. 98.9 3.7E-08 8.1E-13 78.2 11.8 105 121-241 49-157 (161)
236 TIGR01393 lepA GTP-binding pro 98.9 1.8E-08 3.9E-13 96.1 11.1 109 121-244 70-178 (595)
237 cd01874 Cdc42 Cdc42 subfamily. 98.9 2.6E-08 5.7E-13 80.4 10.6 109 121-241 49-170 (175)
238 PLN03108 Rab family protein; P 98.8 9E-08 1.9E-12 79.6 13.8 104 122-241 56-163 (210)
239 PRK10218 GTP-binding protein; 98.8 2.9E-08 6.2E-13 94.5 12.0 112 119-244 66-193 (607)
240 PRK04000 translation initiatio 98.8 1.5E-08 3.3E-13 92.7 9.7 110 121-243 85-198 (411)
241 PLN03071 GTP-binding nuclear p 98.8 3.6E-08 7.8E-13 82.6 11.0 104 121-242 62-168 (219)
242 cd04134 Rho3 Rho3 subfamily. 98.8 2.4E-08 5.2E-13 81.6 9.7 110 121-242 48-170 (189)
243 cd01853 Toc34_like Toc34-like 98.8 7.1E-09 1.5E-13 88.5 6.6 23 32-54 31-53 (249)
244 TIGR01394 TypA_BipA GTP-bindin 98.8 1.5E-08 3.4E-13 96.3 9.6 112 119-244 62-189 (594)
245 cd04129 Rho2 Rho2 subfamily. 98.8 2.8E-08 6.2E-13 81.0 9.8 109 121-241 49-168 (187)
246 PRK12724 flagellar biosynthesi 98.8 1E-07 2.2E-12 86.4 13.8 173 32-237 223-402 (432)
247 KOG1954 Endocytosis/signaling 98.8 9.7E-09 2.1E-13 90.0 6.7 167 31-225 57-250 (532)
248 KOG0780 Signal recognition par 98.8 4.4E-08 9.5E-13 86.4 10.7 153 28-200 97-254 (483)
249 TIGR03680 eif2g_arch translati 98.8 1.9E-08 4.2E-13 91.9 8.8 110 121-243 80-193 (406)
250 PRK05433 GTP-binding protein L 98.8 2.4E-08 5.2E-13 95.3 9.7 110 120-244 73-182 (600)
251 PRK12727 flagellar biosynthesi 98.8 2.6E-07 5.7E-12 85.8 16.0 166 32-231 350-521 (559)
252 TIGR00991 3a0901s02IAP34 GTP-b 98.8 2.5E-08 5.4E-13 87.0 8.8 129 29-202 35-169 (313)
253 TIGR02836 spore_IV_A stage IV 98.8 3.3E-08 7.1E-13 88.7 9.4 176 33-247 18-238 (492)
254 PRK05703 flhF flagellar biosyn 98.8 8.3E-08 1.8E-12 88.0 12.3 174 33-238 222-401 (424)
255 PTZ00327 eukaryotic translatio 98.8 3.4E-08 7.3E-13 91.2 9.1 109 121-242 117-229 (460)
256 cd01900 YchF YchF subfamily. 98.8 7E-09 1.5E-13 89.5 4.3 101 35-163 1-103 (274)
257 COG2229 Predicted GTPase [Gene 98.8 1.2E-07 2.6E-12 75.7 10.9 104 121-241 68-173 (187)
258 PRK09602 translation-associate 98.8 4E-08 8.6E-13 89.2 9.3 61 187-255 218-284 (396)
259 PTZ00141 elongation factor 1- 98.7 8.6E-08 1.9E-12 88.5 10.8 110 119-236 83-203 (446)
260 PRK09601 GTP-binding protein Y 98.7 1.8E-08 3.9E-13 89.9 6.1 103 33-163 3-107 (364)
261 PTZ00258 GTP-binding protein; 98.7 2.1E-08 4.7E-13 90.3 5.9 106 30-163 19-126 (390)
262 PRK06995 flhF flagellar biosyn 98.7 3.4E-07 7.3E-12 84.7 13.4 165 33-230 257-427 (484)
263 cd01875 RhoG RhoG subfamily. 98.7 1.2E-07 2.6E-12 77.7 9.2 110 121-242 51-173 (191)
264 KOG0462 Elongation factor-type 98.7 7E-08 1.5E-12 88.5 7.9 105 121-244 125-233 (650)
265 cd04103 Centaurin_gamma Centau 98.7 3.4E-07 7.3E-12 72.7 11.1 101 123-241 49-154 (158)
266 COG3640 CooC CO dehydrogenase 98.6 3E-07 6.6E-12 76.4 10.4 147 34-199 2-198 (255)
267 PF00071 Ras: Ras family; Int 98.6 8.8E-07 1.9E-11 69.9 13.0 105 121-241 48-156 (162)
268 TIGR00176 mobB molybdopterin-g 98.6 3.5E-08 7.6E-13 78.3 4.7 92 34-131 1-100 (155)
269 PRK14721 flhF flagellar biosyn 98.6 8.1E-07 1.8E-11 81.0 14.1 165 32-230 191-362 (420)
270 TIGR00503 prfC peptide chain r 98.6 3.3E-07 7.2E-12 86.2 12.0 83 119-215 78-160 (527)
271 PTZ00416 elongation factor 2; 98.6 5.4E-08 1.2E-12 96.3 6.6 67 120-199 91-157 (836)
272 PRK00741 prfC peptide chain re 98.6 4.8E-07 1E-11 85.1 12.3 83 119-215 77-159 (526)
273 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.6 5.3E-07 1.1E-11 73.4 11.0 109 121-241 53-175 (182)
274 cd04133 Rop_like Rop subfamily 98.6 2.9E-07 6.4E-12 74.5 9.4 111 121-243 49-170 (176)
275 cd04131 Rnd Rnd subfamily. Th 98.6 3.8E-07 8.2E-12 73.9 9.8 109 121-241 49-171 (178)
276 KOG1490 GTP-binding protein CR 98.6 9E-08 2E-12 86.9 6.5 157 29-235 165-330 (620)
277 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.6 6.2E-07 1.3E-11 75.8 11.1 109 121-241 61-183 (232)
278 PF00735 Septin: Septin; Inte 98.6 3.2E-07 7E-12 79.7 9.5 59 150-216 111-172 (281)
279 PF08477 Miro: Miro-like prote 98.6 1.2E-07 2.6E-12 71.1 5.9 21 35-55 2-22 (119)
280 PTZ00132 GTP-binding nuclear p 98.6 3.7E-07 8E-12 76.1 9.2 104 121-242 58-164 (215)
281 KOG0073 GTP-binding ADP-ribosy 98.6 4E-07 8.7E-12 71.3 8.6 144 32-234 16-166 (185)
282 cd03110 Fer4_NifH_child This p 98.6 3.8E-06 8.2E-11 67.9 14.7 162 34-218 2-170 (179)
283 PRK13351 elongation factor G; 98.6 4.4E-07 9.6E-12 88.3 10.8 82 120-215 72-153 (687)
284 COG1100 GTPase SAR1 and relate 98.6 2.5E-07 5.4E-12 77.0 7.8 117 33-202 6-127 (219)
285 PF04548 AIG1: AIG1 family; I 98.6 2E-07 4.3E-12 77.8 7.2 101 119-222 47-157 (212)
286 smart00176 RAN Ran (Ras-relate 98.6 3.8E-07 8.3E-12 75.4 8.8 104 121-242 44-150 (200)
287 cd01858 NGP_1 NGP-1. Autoanti 98.5 1.3E-07 2.8E-12 75.0 5.5 33 34-70 104-136 (157)
288 COG0532 InfB Translation initi 98.5 7.3E-07 1.6E-11 81.9 9.6 157 29-242 2-166 (509)
289 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.5 1.5E-06 3.3E-11 73.0 10.8 109 121-241 49-171 (222)
290 KOG1145 Mitochondrial translat 98.5 1.4E-06 2.9E-11 80.2 11.0 154 29-241 150-311 (683)
291 PLN00043 elongation factor 1-a 98.5 1.1E-06 2.4E-11 81.2 10.4 109 119-235 83-202 (447)
292 COG3596 Predicted GTPase [Gene 98.5 5.7E-07 1.2E-11 76.4 7.6 77 120-201 86-163 (296)
293 KOG0090 Signal recognition par 98.5 4E-07 8.6E-12 74.4 6.4 118 30-203 36-162 (238)
294 cd04178 Nucleostemin_like Nucl 98.5 2.7E-07 5.9E-12 74.5 5.4 34 33-70 118-151 (172)
295 TIGR00993 3a0901s04IAP86 chlor 98.4 5.6E-07 1.2E-11 85.1 7.5 21 34-54 120-140 (763)
296 PRK12740 elongation factor G; 98.4 1.2E-06 2.6E-11 85.1 10.0 70 119-201 58-127 (668)
297 PLN00116 translation elongatio 98.4 3.5E-07 7.6E-12 90.7 6.2 67 120-199 97-163 (843)
298 PRK07560 elongation factor EF- 98.4 8.5E-07 1.8E-11 86.8 7.7 68 120-200 86-153 (731)
299 COG2403 Predicted GTPase [Gene 98.4 4E-06 8.6E-11 73.9 10.9 192 20-242 114-322 (449)
300 COG1161 Predicted GTPases [Gen 98.4 4.3E-07 9.3E-12 80.5 5.1 33 34-70 134-166 (322)
301 TIGR00490 aEF-2 translation el 98.4 1.4E-06 3.1E-11 85.1 9.2 71 118-201 83-153 (720)
302 COG1763 MobB Molybdopterin-gua 98.4 1E-06 2.2E-11 70.0 6.7 39 31-69 1-41 (161)
303 KOG1486 GTP-binding protein DR 98.4 1.5E-06 3.2E-11 72.9 7.9 88 33-166 63-153 (364)
304 KOG2486 Predicted GTPase [Gene 98.4 3.2E-07 7E-12 77.9 3.8 163 29-241 133-311 (320)
305 KOG0461 Selenocysteine-specifi 98.4 2.1E-06 4.6E-11 75.0 8.8 119 119-251 68-201 (522)
306 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.4 4E-06 8.6E-11 67.7 9.7 160 33-248 23-187 (221)
307 COG1126 GlnQ ABC-type polar am 98.3 6.8E-07 1.5E-11 73.6 4.2 44 11-54 2-50 (240)
308 TIGR03499 FlhF flagellar biosy 98.3 1.1E-06 2.4E-11 76.4 5.5 40 31-70 193-236 (282)
309 COG0481 LepA Membrane GTPase L 98.3 1.6E-06 3.6E-11 78.5 6.4 104 120-244 75-184 (603)
310 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.7E-06 3.6E-11 67.4 5.5 33 34-70 85-117 (141)
311 TIGR03597 GTPase_YqeH ribosome 98.2 3E-06 6.6E-11 76.3 7.5 92 34-165 156-250 (360)
312 KOG0781 Signal recognition par 98.2 2.8E-06 6.1E-11 77.0 6.9 154 31-201 377-545 (587)
313 COG5256 TEF1 Translation elong 98.2 2.1E-05 4.5E-10 70.5 12.4 112 119-238 83-203 (428)
314 PF03193 DUF258: Protein of un 98.2 7.8E-07 1.7E-11 70.6 2.8 23 33-55 36-58 (161)
315 PRK09563 rbgA GTPase YlqF; Rev 98.2 1.7E-06 3.6E-11 75.6 5.1 34 33-70 122-155 (287)
316 cd01851 GBP Guanylate-binding 98.2 2.7E-06 5.9E-11 71.6 6.2 26 29-54 4-29 (224)
317 COG1341 Predicted GTPase or GT 98.2 6.5E-06 1.4E-10 73.6 8.5 133 30-165 71-213 (398)
318 PRK12289 GTPase RsgA; Reviewed 98.2 2.9E-06 6.3E-11 75.9 6.3 22 33-54 173-194 (352)
319 COG5019 CDC3 Septin family pro 98.2 9.4E-06 2E-10 71.6 9.2 60 150-217 131-193 (373)
320 KOG0448 Mitofusin 1 GTPase, in 98.2 1.1E-05 2.4E-10 76.0 10.2 86 121-219 206-292 (749)
321 PRK12288 GTPase RsgA; Reviewed 98.2 3.5E-06 7.6E-11 75.3 6.5 21 34-54 207-227 (347)
322 COG1120 FepC ABC-type cobalami 98.2 1.7E-06 3.8E-11 73.6 4.2 45 10-54 1-50 (258)
323 cd01849 YlqF_related_GTPase Yl 98.2 2.8E-06 6.2E-11 67.1 5.1 24 31-54 99-122 (155)
324 PRK13796 GTPase YqeH; Provisio 98.2 2.9E-06 6.4E-11 76.5 5.7 38 34-71 162-200 (365)
325 COG5257 GCD11 Translation init 98.2 8.5E-07 1.8E-11 76.8 2.0 110 123-245 88-201 (415)
326 cd01873 RhoBTB RhoBTB subfamil 98.1 3E-05 6.5E-10 63.8 11.0 106 121-241 66-191 (195)
327 cd01855 YqeH YqeH. YqeH is an 98.1 2.7E-06 5.8E-11 69.5 4.3 23 33-55 128-150 (190)
328 KOG1424 Predicted GTP-binding 98.1 3.9E-06 8.5E-11 76.7 5.5 38 31-72 313-350 (562)
329 cd02037 MRP-like MRP (Multiple 98.1 7.7E-05 1.7E-09 59.7 12.5 130 34-199 2-134 (169)
330 PLN00023 GTP-binding protein; 98.1 3.2E-05 7E-10 68.1 10.9 85 121-217 83-186 (334)
331 COG1162 Predicted GTPases [Gen 98.1 4.3E-06 9.4E-11 72.4 5.3 38 31-69 163-200 (301)
332 COG1121 ZnuC ABC-type Mn/Zn tr 98.1 3.4E-06 7.4E-11 71.6 4.4 46 9-54 2-52 (254)
333 PF04670 Gtr1_RagA: Gtr1/RagA 98.1 7.2E-06 1.6E-10 69.2 6.3 108 121-234 48-164 (232)
334 PRK13543 cytochrome c biogenes 98.1 5.1E-06 1.1E-10 69.3 5.4 52 3-54 3-59 (214)
335 TIGR03596 GTPase_YlqF ribosome 98.1 4E-06 8.7E-11 72.8 4.8 34 33-70 119-152 (276)
336 TIGR00092 GTP-binding protein 98.1 5.7E-06 1.2E-10 74.1 5.3 102 35-163 5-108 (368)
337 cd04102 RabL3 RabL3 (Rab-like3 98.1 4E-05 8.6E-10 63.5 9.9 20 35-54 3-22 (202)
338 COG1117 PstB ABC-type phosphat 98.0 5.6E-06 1.2E-10 68.1 4.6 47 8-54 4-55 (253)
339 COG3276 SelB Selenocysteine-sp 98.0 5.8E-06 1.3E-10 74.4 5.0 107 120-241 49-157 (447)
340 KOG2655 Septin family protein 98.0 2.7E-05 5.9E-10 69.1 9.1 58 151-216 128-188 (366)
341 COG0480 FusA Translation elong 98.0 1.4E-05 3E-10 77.2 7.7 142 31-216 9-157 (697)
342 PRK14493 putative bifunctional 98.0 3E-05 6.4E-10 67.1 9.1 36 32-68 1-38 (274)
343 COG2895 CysN GTPases - Sulfate 98.0 1.4E-05 3.1E-10 70.1 6.7 104 118-234 83-191 (431)
344 KOG0078 GTP-binding protein SE 98.0 0.00011 2.3E-09 60.2 11.4 154 31-240 11-168 (207)
345 PRK14845 translation initiatio 98.0 3.6E-05 7.8E-10 77.3 10.4 109 120-241 525-668 (1049)
346 COG3638 ABC-type phosphate/pho 98.0 6.1E-06 1.3E-10 68.8 4.1 46 9-54 1-52 (258)
347 KOG0076 GTP-binding ADP-ribosy 98.0 1.1E-05 2.4E-10 64.0 5.1 167 34-249 19-194 (197)
348 COG0012 Predicted GTPase, prob 98.0 8.9E-06 1.9E-10 72.1 5.1 103 33-163 3-108 (372)
349 COG3839 MalK ABC-type sugar tr 98.0 6.1E-06 1.3E-10 73.0 4.0 44 11-54 3-51 (338)
350 KOG0098 GTPase Rab2, small G p 98.0 0.00012 2.7E-09 58.8 10.9 148 35-238 9-160 (216)
351 cd02034 CooC The accessory pro 98.0 2.1E-05 4.5E-10 59.3 6.3 92 35-132 2-98 (116)
352 COG1127 Ttg2A ABC-type transpo 98.0 1.1E-05 2.3E-10 67.6 5.0 48 8-55 5-57 (263)
353 COG1125 OpuBA ABC-type proline 98.0 6.6E-06 1.4E-10 69.5 3.7 44 11-54 1-49 (309)
354 TIGR00157 ribosome small subun 98.0 1.1E-05 2.4E-10 68.8 4.9 22 33-54 121-142 (245)
355 PF05049 IIGP: Interferon-indu 97.9 9.7E-06 2.1E-10 72.7 4.7 65 120-198 85-153 (376)
356 TIGR01288 nodI ATP-binding ABC 97.9 9.2E-06 2E-10 71.4 4.5 48 8-55 1-53 (303)
357 COG2884 FtsE Predicted ATPase 97.9 8.9E-06 1.9E-10 65.8 3.8 45 11-55 1-51 (223)
358 PRK14248 phosphate ABC transpo 97.9 1.2E-05 2.6E-10 69.4 4.9 49 6-54 16-69 (268)
359 KOG0075 GTP-binding ADP-ribosy 97.9 6.1E-06 1.3E-10 63.7 2.6 148 34-240 22-176 (186)
360 COG3842 PotA ABC-type spermidi 97.9 1E-05 2.2E-10 72.0 4.2 46 9-54 3-53 (352)
361 KOG0092 GTPase Rab5/YPT51 and 97.9 5.3E-05 1.2E-09 61.1 7.9 107 121-244 54-165 (200)
362 COG1217 TypA Predicted membran 97.9 8.9E-05 1.9E-09 67.4 10.0 100 118-231 65-170 (603)
363 KOG0394 Ras-related GTPase [Ge 97.9 3.6E-05 7.9E-10 61.6 6.6 154 32-241 9-173 (210)
364 COG5192 BMS1 GTP-binding prote 97.9 9.8E-05 2.1E-09 68.5 10.3 65 153-225 134-204 (1077)
365 cd02038 FleN-like FleN is a me 97.9 0.00027 5.9E-09 54.8 11.5 105 34-199 2-110 (139)
366 PRK13539 cytochrome c biogenes 97.9 1.3E-05 2.8E-10 66.5 4.2 46 10-55 1-51 (207)
367 COG1116 TauB ABC-type nitrate/ 97.9 1.3E-05 2.9E-10 67.4 4.1 45 10-54 2-51 (248)
368 PRK10247 putative ABC transpor 97.9 1.8E-05 3.9E-10 66.5 4.9 46 9-54 5-55 (225)
369 PRK14242 phosphate transporter 97.9 1.8E-05 3.8E-10 67.7 4.8 47 8-54 3-54 (253)
370 cd03296 ABC_CysA_sulfate_impor 97.9 1.4E-05 3E-10 67.7 4.1 46 10-55 1-51 (239)
371 cd02036 MinD Bacterial cell di 97.9 0.00059 1.3E-08 54.6 13.4 125 34-201 2-129 (179)
372 PRK14259 phosphate ABC transpo 97.9 1.7E-05 3.7E-10 68.5 4.5 48 7-54 9-61 (269)
373 PRK13536 nodulation factor exp 97.9 1.2E-05 2.7E-10 71.7 3.7 47 9-55 39-90 (340)
374 KOG0086 GTPase Rab4, small G p 97.8 0.00022 4.7E-09 55.5 9.9 144 35-236 12-161 (214)
375 PRK11831 putative ABC transpor 97.8 1.6E-05 3.5E-10 68.7 4.2 49 7-55 3-56 (269)
376 PF03205 MobB: Molybdopterin g 97.8 1.5E-05 3.2E-10 62.1 3.6 36 33-68 1-39 (140)
377 COG1119 ModF ABC-type molybden 97.8 4.8E-05 1E-09 63.9 6.7 66 5-70 25-97 (257)
378 PRK11124 artP arginine transpo 97.8 1.7E-05 3.7E-10 67.3 4.1 46 10-55 1-51 (242)
379 cd01858 NGP_1 NGP-1. Autoanti 97.8 1.5E-05 3.3E-10 63.0 3.6 85 148-241 4-90 (157)
380 COG1131 CcmA ABC-type multidru 97.8 1.5E-05 3.2E-10 69.8 3.8 45 11-55 4-54 (293)
381 PRK14489 putative bifunctional 97.8 2.9E-05 6.3E-10 70.1 5.8 41 29-69 202-244 (366)
382 PRK10751 molybdopterin-guanine 97.8 2.2E-05 4.8E-10 63.2 4.2 38 30-67 4-43 (173)
383 PF01656 CbiA: CobQ/CobB/MinD/ 97.8 0.00022 4.8E-09 57.9 10.2 149 34-201 1-163 (195)
384 COG1136 SalX ABC-type antimicr 97.8 1.9E-05 4.1E-10 66.0 3.8 43 12-54 2-53 (226)
385 PRK14265 phosphate ABC transpo 97.8 2.3E-05 5E-10 67.9 4.3 48 7-54 16-68 (274)
386 cd01856 YlqF YlqF. Proteins o 97.8 4.8E-05 1E-09 61.1 5.9 22 33-54 116-137 (171)
387 PRK13537 nodulation ABC transp 97.8 2E-05 4.3E-10 69.4 3.9 46 10-55 6-56 (306)
388 PRK11231 fecE iron-dicitrate t 97.8 2.3E-05 4.9E-10 67.1 4.0 46 10-55 1-51 (255)
389 COG4559 ABC-type hemin transpo 97.8 2.4E-05 5.2E-10 64.4 3.8 45 11-55 1-50 (259)
390 PRK14269 phosphate ABC transpo 97.8 2.3E-05 4.9E-10 66.8 3.9 45 10-54 1-50 (246)
391 PRK14495 putative molybdopteri 97.8 4.7E-05 1E-09 69.4 6.0 37 32-68 1-39 (452)
392 cd03258 ABC_MetN_methionine_tr 97.8 2.6E-05 5.7E-10 65.7 4.2 44 12-55 2-54 (233)
393 PRK14271 phosphate ABC transpo 97.8 3.2E-05 7E-10 67.1 4.8 50 6-55 16-70 (276)
394 cd03259 ABC_Carb_Solutes_like 97.8 2.2E-05 4.9E-10 65.2 3.7 43 12-54 1-48 (213)
395 COG1124 DppF ABC-type dipeptid 97.8 6.1E-05 1.3E-09 63.2 6.1 45 10-54 2-55 (252)
396 KOG2485 Conserved ATP/GTP bind 97.8 4E-05 8.8E-10 66.3 5.1 40 31-70 142-182 (335)
397 TIGR03522 GldA_ABC_ATP gliding 97.7 2E-05 4.2E-10 69.3 3.2 46 10-55 1-51 (301)
398 cd02035 ArsA ArsA ATPase funct 97.7 0.0003 6.5E-09 58.8 10.2 37 34-70 1-39 (217)
399 COG4152 ABC-type uncharacteriz 97.7 2.2E-05 4.7E-10 66.0 3.2 45 10-54 1-50 (300)
400 PRK10744 pstB phosphate transp 97.7 3.4E-05 7.3E-10 66.3 4.5 47 8-54 10-61 (260)
401 cd03265 ABC_DrrA DrrA is the A 97.7 2.4E-05 5.3E-10 65.4 3.5 44 12-55 1-49 (220)
402 PRK11248 tauB taurine transpor 97.7 2.5E-05 5.5E-10 66.9 3.6 45 11-55 1-50 (255)
403 TIGR02673 FtsE cell division A 97.7 3.2E-05 7E-10 64.3 4.1 44 12-55 2-51 (214)
404 COG4604 CeuD ABC-type enteroch 97.7 2.2E-05 4.9E-10 63.9 3.0 44 11-54 1-49 (252)
405 KOG0084 GTPase Rab1/YPT1, smal 97.7 0.00033 7.2E-09 56.8 9.6 152 35-241 12-167 (205)
406 PRK13638 cbiO cobalt transport 97.7 3.2E-05 6.9E-10 66.9 4.1 45 11-55 1-50 (271)
407 PRK14237 phosphate transporter 97.7 3.7E-05 8E-10 66.3 4.5 47 8-54 17-68 (267)
408 TIGR02315 ABC_phnC phosphonate 97.7 3.4E-05 7.3E-10 65.4 4.2 44 12-55 2-51 (243)
409 cd03257 ABC_NikE_OppD_transpor 97.7 3.6E-05 7.7E-10 64.6 4.2 45 11-55 1-54 (228)
410 cd03261 ABC_Org_Solvent_Resist 97.7 2.4E-05 5.2E-10 66.1 3.1 44 12-55 1-49 (235)
411 TIGR00972 3a0107s01c2 phosphat 97.7 3.1E-05 6.7E-10 65.9 3.8 45 11-55 1-50 (247)
412 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 2.7E-05 5.8E-10 64.9 3.4 44 12-55 1-53 (218)
413 PRK14273 phosphate ABC transpo 97.7 5E-05 1.1E-09 64.9 5.1 44 11-54 7-55 (254)
414 PRK14255 phosphate ABC transpo 97.7 3.8E-05 8.3E-10 65.5 4.3 46 9-54 3-53 (252)
415 PRK00098 GTPase RsgA; Reviewed 97.7 5.4E-05 1.2E-09 66.4 5.3 23 33-55 165-187 (298)
416 PRK13540 cytochrome c biogenes 97.7 3.1E-05 6.8E-10 63.8 3.6 44 12-55 2-50 (200)
417 PRK14238 phosphate transporter 97.7 4.7E-05 1E-09 65.9 4.8 48 7-54 20-72 (271)
418 PRK11247 ssuB aliphatic sulfon 97.7 4.2E-05 9.1E-10 65.7 4.5 46 10-55 11-61 (257)
419 PRK10851 sulfate/thiosulfate t 97.7 2.6E-05 5.6E-10 70.1 3.3 46 10-55 1-51 (353)
420 PRK14250 phosphate ABC transpo 97.7 3.8E-05 8.3E-10 65.2 4.2 46 10-55 2-52 (241)
421 CHL00072 chlL photochlorophyll 97.7 0.0011 2.3E-08 58.0 13.3 36 35-70 3-40 (290)
422 PRK14239 phosphate transporter 97.7 4.6E-05 9.9E-10 65.0 4.6 44 11-54 5-53 (252)
423 PRK14241 phosphate transporter 97.7 3.6E-05 7.8E-10 66.0 4.0 44 11-54 4-52 (258)
424 KOG0468 U5 snRNP-specific prot 97.7 9.3E-05 2E-09 69.8 6.9 85 122-219 198-285 (971)
425 PRK14491 putative bifunctional 97.7 7.7E-05 1.7E-09 71.4 6.6 40 28-67 6-47 (597)
426 TIGR03864 PQQ_ABC_ATP ABC tran 97.7 3.4E-05 7.4E-10 65.2 3.7 45 11-55 1-50 (236)
427 cd03260 ABC_PstB_phosphate_tra 97.7 3.1E-05 6.6E-10 65.0 3.4 43 12-54 1-48 (227)
428 cd03293 ABC_NrtD_SsuB_transpor 97.7 3E-05 6.4E-10 64.8 3.3 44 12-55 1-53 (220)
429 PRK13636 cbiO cobalt transport 97.7 4.3E-05 9.3E-10 66.5 4.4 45 11-55 5-55 (283)
430 PRK14267 phosphate ABC transpo 97.7 4.5E-05 9.8E-10 65.1 4.4 45 11-55 4-53 (253)
431 cd03111 CpaE_like This protein 97.7 0.00086 1.9E-08 49.5 10.7 73 35-166 3-78 (106)
432 cd03224 ABC_TM1139_LivF_branch 97.7 3.1E-05 6.7E-10 64.7 3.2 44 12-55 1-49 (222)
433 PRK11264 putative amino-acid A 97.7 4.7E-05 1E-09 64.9 4.4 45 11-55 3-52 (250)
434 PRK14274 phosphate ABC transpo 97.7 4.2E-05 9.2E-10 65.6 4.1 46 9-54 10-60 (259)
435 PRK13538 cytochrome c biogenes 97.7 3.8E-05 8.3E-10 63.5 3.7 45 11-55 1-50 (204)
436 PRK11300 livG leucine/isoleuci 97.7 4.2E-05 9.1E-10 65.4 4.1 45 11-55 5-54 (255)
437 PRK14252 phosphate ABC transpo 97.7 4.7E-05 1E-09 65.6 4.4 48 7-54 12-64 (265)
438 KOG1491 Predicted GTP-binding 97.7 3.9E-05 8.6E-10 67.1 3.8 103 31-164 19-126 (391)
439 PRK10575 iron-hydroxamate tran 97.7 5.3E-05 1.2E-09 65.2 4.7 48 8-55 8-60 (265)
440 cd03301 ABC_MalK_N The N-termi 97.7 3.8E-05 8.2E-10 63.8 3.6 44 12-55 1-49 (213)
441 PRK14261 phosphate ABC transpo 97.7 4.7E-05 1E-09 65.1 4.3 44 11-54 6-54 (253)
442 cd03266 ABC_NatA_sodium_export 97.7 4.4E-05 9.5E-10 63.7 4.0 44 12-55 2-54 (218)
443 PRK13547 hmuV hemin importer A 97.7 3.6E-05 7.8E-10 66.6 3.6 44 12-55 2-50 (272)
444 cd02032 Bchl_like This family 97.7 0.0011 2.4E-08 57.0 12.8 37 34-70 2-40 (267)
445 cd03274 ABC_SMC4_euk Eukaryoti 97.7 5.1E-05 1.1E-09 63.3 4.3 41 12-53 6-46 (212)
446 cd03218 ABC_YhbG The ABC trans 97.7 3.8E-05 8.2E-10 64.7 3.6 44 12-55 1-49 (232)
447 cd03268 ABC_BcrA_bacitracin_re 97.7 3.6E-05 7.8E-10 63.7 3.4 43 12-54 1-48 (208)
448 PRK11701 phnK phosphonate C-P 97.7 4.4E-05 9.6E-10 65.4 4.0 45 11-55 6-55 (258)
449 cd03269 ABC_putative_ATPase Th 97.7 3.3E-05 7.1E-10 64.1 3.1 44 12-55 1-49 (210)
450 cd03226 ABC_cobalt_CbiO_domain 97.7 3.4E-05 7.4E-10 63.7 3.2 42 13-54 1-48 (205)
451 PRK10895 lipopolysaccharide AB 97.7 4.7E-05 1E-09 64.5 4.1 45 11-55 3-52 (241)
452 PRK14247 phosphate ABC transpo 97.7 5E-05 1.1E-09 64.8 4.2 45 11-55 3-52 (250)
453 cd03262 ABC_HisP_GlnQ_permease 97.7 4.2E-05 9E-10 63.5 3.6 44 12-55 1-49 (213)
454 TIGR02323 CP_lyasePhnK phospho 97.6 5E-05 1.1E-09 64.9 4.2 45 11-55 3-52 (253)
455 cd02117 NifH_like This family 97.6 0.001 2.2E-08 55.3 12.0 37 34-70 2-40 (212)
456 TIGR03411 urea_trans_UrtD urea 97.6 4.5E-05 9.8E-10 64.6 3.8 45 11-55 2-51 (242)
457 cd03256 ABC_PhnC_transporter A 97.6 4E-05 8.7E-10 64.8 3.5 44 12-55 1-50 (241)
458 TIGR00960 3a0501s02 Type II (G 97.6 4.1E-05 8.9E-10 63.8 3.5 44 12-55 2-52 (216)
459 cd03263 ABC_subfamily_A The AB 97.6 4.4E-05 9.6E-10 63.7 3.7 44 12-55 1-51 (220)
460 PRK14268 phosphate ABC transpo 97.6 5.4E-05 1.2E-09 64.9 4.3 46 9-54 10-60 (258)
461 PRK14245 phosphate ABC transpo 97.6 4.7E-05 1E-09 64.9 3.9 45 10-54 2-51 (250)
462 cd03229 ABC_Class3 This class 97.6 3.8E-05 8.3E-10 62.1 3.1 42 13-54 2-48 (178)
463 PRK09493 glnQ glutamine ABC tr 97.6 4.6E-05 9.9E-10 64.6 3.8 44 12-55 2-50 (240)
464 TIGR01978 sufC FeS assembly AT 97.6 3.8E-05 8.3E-10 65.0 3.3 43 12-54 1-48 (243)
465 PRK04296 thymidine kinase; Pro 97.6 0.00078 1.7E-08 55.2 10.9 113 33-163 3-117 (190)
466 PRK14251 phosphate ABC transpo 97.6 5.9E-05 1.3E-09 64.3 4.4 44 11-54 4-52 (251)
467 cd01854 YjeQ_engC YjeQ/EngC. 97.6 7.1E-05 1.5E-09 65.3 4.9 64 34-134 163-226 (287)
468 PRK14254 phosphate ABC transpo 97.6 6.7E-05 1.4E-09 65.4 4.7 48 8-55 36-88 (285)
469 PHA02518 ParA-like protein; Pr 97.6 0.0016 3.4E-08 53.7 12.7 107 34-165 2-111 (211)
470 PRK13646 cbiO cobalt transport 97.6 5.5E-05 1.2E-09 66.0 4.2 46 10-55 1-56 (286)
471 PRK14256 phosphate ABC transpo 97.6 5.7E-05 1.2E-09 64.5 4.1 44 11-54 4-52 (252)
472 TIGR03410 urea_trans_UrtE urea 97.6 4.4E-05 9.6E-10 64.2 3.4 44 12-55 1-49 (230)
473 COG4161 ArtP ABC-type arginine 97.6 0.00011 2.4E-09 58.2 5.3 59 10-68 1-66 (242)
474 cd03225 ABC_cobalt_CbiO_domain 97.6 4.2E-05 9.1E-10 63.4 3.2 42 14-55 2-50 (211)
475 PRK14272 phosphate ABC transpo 97.6 6.4E-05 1.4E-09 64.1 4.4 46 10-55 3-53 (252)
476 cd03219 ABC_Mj1267_LivG_branch 97.6 4.4E-05 9.6E-10 64.4 3.3 43 13-55 2-49 (236)
477 cd03216 ABC_Carb_Monos_I This 97.6 4.5E-05 9.8E-10 60.9 3.2 43 13-55 2-49 (163)
478 PRK10584 putative ABC transpor 97.6 7E-05 1.5E-09 62.9 4.5 45 11-55 6-59 (228)
479 PRK13548 hmuV hemin importer A 97.6 5.8E-05 1.3E-09 64.8 4.1 45 11-55 2-51 (258)
480 PRK13648 cbiO cobalt transport 97.6 7.8E-05 1.7E-09 64.4 4.9 46 10-55 6-58 (269)
481 PRK13641 cbiO cobalt transport 97.6 5.5E-05 1.2E-09 66.0 4.0 46 10-55 1-56 (287)
482 PRK14253 phosphate ABC transpo 97.6 6.9E-05 1.5E-09 63.8 4.5 44 11-54 3-51 (249)
483 PRK10908 cell division protein 97.6 5.4E-05 1.2E-09 63.4 3.8 44 12-55 2-51 (222)
484 TIGR01189 ccmA heme ABC export 97.6 4.5E-05 9.7E-10 62.7 3.2 44 12-55 1-49 (198)
485 PRK14246 phosphate ABC transpo 97.6 5.8E-05 1.3E-09 64.8 3.9 46 10-55 9-59 (257)
486 PRK11614 livF leucine/isoleuci 97.6 6E-05 1.3E-09 63.7 4.0 44 11-54 5-53 (237)
487 PRK14262 phosphate ABC transpo 97.6 6E-05 1.3E-09 64.3 4.0 44 11-54 3-51 (250)
488 TIGR03265 PhnT2 putative 2-ami 97.6 4.1E-05 9E-10 68.8 3.1 46 10-55 3-53 (353)
489 PRK13649 cbiO cobalt transport 97.6 6.5E-05 1.4E-09 65.2 4.3 46 10-55 1-56 (280)
490 PRK14264 phosphate ABC transpo 97.6 8E-05 1.7E-09 65.5 4.9 48 7-54 41-93 (305)
491 PRK14270 phosphate ABC transpo 97.6 6.9E-05 1.5E-09 63.9 4.4 45 10-54 3-52 (251)
492 PRK09544 znuC high-affinity zi 97.6 6.4E-05 1.4E-09 64.3 4.1 45 11-55 4-53 (251)
493 PRK11432 fbpC ferric transport 97.6 4.8E-05 1E-09 68.3 3.5 45 11-55 6-55 (351)
494 cd03235 ABC_Metallic_Cations A 97.6 4.4E-05 9.4E-10 63.5 3.0 41 14-54 2-47 (213)
495 PRK09580 sufC cysteine desulfu 97.6 5.5E-05 1.2E-09 64.3 3.7 45 11-55 1-50 (248)
496 PRK10253 iron-enterobactin tra 97.6 6.2E-05 1.3E-09 64.8 4.0 48 8-55 4-56 (265)
497 PRK10418 nikD nickel transport 97.6 8.1E-05 1.7E-09 63.7 4.6 45 9-54 2-51 (254)
498 TIGR01007 eps_fam capsular exo 97.6 0.0015 3.2E-08 53.8 12.1 39 32-70 17-58 (204)
499 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 4.8E-05 1E-09 59.5 2.9 42 13-54 2-48 (144)
500 cd03231 ABC_CcmA_heme_exporter 97.6 6.4E-05 1.4E-09 62.0 3.8 44 12-55 1-49 (201)
No 1
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.2e-41 Score=282.51 Aligned_cols=218 Identities=56% Similarity=0.900 Sum_probs=203.7
Q ss_pred ccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccc
Q 025133 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK 104 (257)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~ 104 (257)
......++|+.+|+||+|||||||+|.++..++|+++|++.|++|+..+++++++.++..+...++|.++.|||+||+++
T Consensus 50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk 129 (391)
T KOG2743|consen 50 KSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVK 129 (391)
T ss_pred ccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEec
Confidence 34567899999999999999999999999999999999999999987889999998876777788999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
++...++.++.++++.+|+|++||+|++.|.++...|..+..+.....+|.+++|+|+......++...+...+.++..|
T Consensus 130 ~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 130 DNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred chHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999988887777778889999
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCCC
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~~ 246 (257)
+.+||.+++||+|++++++ +..+++.++.+|.-|+++.+.+++.+++.+++...|+..
T Consensus 210 iA~AD~II~NKtDli~~e~----~~~l~q~I~~INslA~m~~Tky~~vdlsnvLdi~ayds~ 267 (391)
T KOG2743|consen 210 IALADRIIMNKTDLVSEEE----VKKLRQRIRSINSLAQMIETKYSRVDLSNVLDIHAFDSE 267 (391)
T ss_pred HhhhheeeeccccccCHHH----HHHHHHHHHHhhhHHHhhhhhhccccHHHhccccccccc
Confidence 9999999999999999865 899999999999999999999999999999999988865
No 2
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=100.00 E-value=7e-40 Score=286.62 Aligned_cols=201 Identities=48% Similarity=0.810 Sum_probs=179.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~-~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+|+++|+||+|||||||+|+|+.+..|+|+||+.||+|+ +++|. .++.... +.+.+++|||+||+.++++...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGE-vgID~~~~l~~~~-----e~~~El~nGCICCT~r~dl~~~ 74 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGE-VGIDGGALLSDTG-----EEVVELTNGCICCTVRDDLLPA 74 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCcc-ccccCCCccccCC-----ccEEEeCCceEEEeccchhHHH
Confidence 599999999999999999999998779999999999998 99994 6665532 3588999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
+.++..+...+|+++|||+|+.+|.++.+.+.....+.....+|.+++||||.++....... ...+..|+.+||+
T Consensus 75 ~~~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~-----~~~~~~Qia~AD~ 149 (323)
T COG0523 75 LERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAI-----AELAEDQLAFADV 149 (323)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHH-----HHHHHHHHHhCcE
Confidence 99999856679999999999999999999887656788899999999999999998876532 2446799999999
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCCCC
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATV 247 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~~~ 247 (257)
+++||+|++++++ ++.+++.++++||.|+|+.+++++.++..+++...++..+
T Consensus 150 ivlNK~Dlv~~~~----l~~l~~~l~~lnp~A~i~~~~~~~~~~~~ll~~~~~~~~~ 202 (323)
T COG0523 150 IVLNKTDLVDAEE----LEALEARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDR 202 (323)
T ss_pred EEEecccCCCHHH----HHHHHHHHHHhCCCCeEEEccccCCCHHHhhccccccccc
Confidence 9999999999864 7999999999999999999999999999999999999666
No 3
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=100.00 E-value=8.8e-36 Score=261.77 Aligned_cols=197 Identities=36% Similarity=0.625 Sum_probs=170.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.++|+++++||+|||||||+|+|+.+..+++++++.||+|+ +++|..++.... ..+.++.+||+||++++++..
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~-v~iD~~ll~~~~-----~~v~eL~~GCiCCs~~~~l~~ 75 (318)
T PRK11537 2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELED 75 (318)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCC-ccccHHHHhCcC-----ceEEEECCCEEEEccCchHHH
Confidence 36899999999999999999999987778999999999997 899988886421 257899999999999999999
Q ss_pred HHHHHHHhc----CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 110 ALEQLVQRK----ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 110 ~l~~~~~~~----~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
++.+++.+. .++|+|+|||+|+.+|.++.+.+.....+....+++.+++|||+.++...++. ......|+
T Consensus 76 ~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~------~~~~~~Qi 149 (318)
T PRK11537 76 ALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQV 149 (318)
T ss_pred HHHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc------cHHHHHHH
Confidence 999998531 26999999999999999999877545567788899999999999998876543 34566899
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
+.||+||+||+|++++ .+.+++.++.+||.|+++.+.++..+...+++...+.
T Consensus 150 ~~AD~IvlnK~Dl~~~------~~~~~~~l~~lnp~a~i~~~~~~~v~~~~l~~~~~~~ 202 (318)
T PRK11537 150 GYADRILLTKTDVAGE------AEKLRERLARINARAPVYTVVHGDIDLSLLFNTNGFM 202 (318)
T ss_pred HhCCEEEEeccccCCH------HHHHHHHHHHhCCCCEEEEeccCCCCHHHHhCCCCcC
Confidence 9999999999999974 3688999999999999999999999999988876553
No 4
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=100.00 E-value=1.1e-34 Score=257.38 Aligned_cols=207 Identities=38% Similarity=0.612 Sum_probs=168.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
++|+++++||+|||||||+|+++....+++++++.||+|+ +++|..++.... .+...+.+.++.+||+||++++++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~-~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~ 81 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGD-LGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIP 81 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCcc-ccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHH
Confidence 5899999999999999999999987678999999999997 899998886521 11123468999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHh--------hh-------cc
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--------KY-------RH 174 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~--------~~-------~~ 174 (257)
+|.+++.+..++|+|+|||+|+++|.++...+. ...+....+++.+++|||+.++..... .. ..
T Consensus 82 ~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~-~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
T TIGR02475 82 TMTKLLARRQRPDHILIETSGLALPKPLVQAFQ-WPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDH 160 (341)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhc-CccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccc
Confidence 999998656789999999999999999998773 345667789999999999997753210 00 00
Q ss_pred CCCh-hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCC-CEEEEeecCCcChhhhhcCccC
Q 025133 175 LSSY-PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSL-AHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 175 ~~~~-~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~-a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
...+ ..+..|++.||+|++||+|++++++ ++.+++.++.+||. ++++.+.++..+.+.+++...+
T Consensus 161 ~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~~----l~~~~~~l~~~~~~~a~i~~~~~~~v~~~~ll~~~~~ 227 (341)
T TIGR02475 161 ETPLEELFEDQLACADLVILNKADLLDAAG----LARVRAEIAAELPRAVKIVEASHGEVDARVLLGLGAA 227 (341)
T ss_pred cchHHHHHHHHHHhCCEEEEeccccCCHHH----HHHHHHHHHHhCCCCCEEEEcccCCCCHHHHhCCCCc
Confidence 0011 2346899999999999999999865 78999999997775 6899999999999999987543
No 5
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=100.00 E-value=3.2e-34 Score=233.10 Aligned_cols=174 Identities=49% Similarity=0.801 Sum_probs=140.1
Q ss_pred eEEEEEecCCCcHHHHHHHHH-ccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYIL-NGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll-~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
|+++|+||+|||||||+++|+ ...++.+++++.||+|+ .++|..++... + ..+.++.+||+||+++.++...+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~-~~iD~~~l~~~--~---~~v~~l~~gcicc~~~~~~~~~l 74 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGE-VNIDAELLQED--G---VPVVELNNGCICCTLRDDLVEAL 74 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTS-THHHHHHHHTT--T----EEEEECTTTESS-TTS-HHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccc-cccchhhhccc--c---eEEEEecCCCcccccHHHHHHHH
Confidence 899999999999999999999 56779999999999998 88999888763 1 24789999999999999999999
Q ss_pred HHHHHhcC--CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 112 EQLVQRKE--RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 112 ~~~~~~~~--~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
.++.. .+ ++++|||||+|+++|..+... ...+.....++.+++|+|+.+|....+ . ...+..|++.||
T Consensus 75 ~~l~~-~~~~~~d~IiIE~sG~a~p~~l~~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~-~-----~~~~~~Qi~~AD 144 (178)
T PF02492_consen 75 RRLLR-EYEERPDRIIIETSGLADPAPLILQ---DPPLKEDFRLDSIITVVDATNFDELEN-I-----PELLREQIAFAD 144 (178)
T ss_dssp HHHCC-CCHGC-SEEEEEEECSSGGGGHHHH---SHHHHHHESESEEEEEEEGTTHGGHTT-H-----CHHHHHHHCT-S
T ss_pred HHHHH-hcCCCcCEEEECCccccccchhhhc---cccccccccccceeEEecccccccccc-c-----hhhhhhcchhcC
Confidence 99986 44 799999999999999988321 556677889999999999998843221 1 244679999999
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~ 225 (257)
++++||+|++++++ .++.+++.++++||.++|+
T Consensus 145 vIvlnK~D~~~~~~---~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 145 VIVLNKIDLVSDEQ---KIERVREMIRELNPKAPIV 177 (178)
T ss_dssp EEEEE-GGGHHHH-----HHHHHHHHHHH-TTSEEE
T ss_pred EEEEeccccCChhh---HHHHHHHHHHHHCCCCEEe
Confidence 99999999999863 3689999999999999986
No 6
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.97 E-value=1e-29 Score=202.64 Aligned_cols=154 Identities=51% Similarity=0.873 Sum_probs=131.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
|+++++||+|||||||++.++...++.+++++.++.|+ .++|...+.... ..+.++.+||+||++++++..++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~-~~~d~~~~~~~~-----~~v~~l~~GCiCC~~~~~l~~~l~ 74 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGE-VGIDNQLVVDTD-----EEIIEMNNGCICCTVRGDLIRALL 74 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCc-cchhHHHHhCCC-----ceEEEeCCCEeEeeCchhHHHHHH
Confidence 78999999999999999999987668899999999997 788877765421 246789999999999999999996
Q ss_pred HHHH----hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 113 QLVQ----RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 113 ~~~~----~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
+++. +..++++|||||||+++|.++.+.+..+..+....+++.+++++|+.++...++.. .....|++.|
T Consensus 75 ~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~------~~~~~Qi~~a 148 (158)
T cd03112 75 DLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ------TEAQSQIAFA 148 (158)
T ss_pred HHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc------HHHHHHHHHC
Confidence 5543 35689999999999999999988765566677889999999999999998876542 3467999999
Q ss_pred CEEEEeCCCC
Q 025133 189 DVVILNKVDL 198 (257)
Q Consensus 189 ~vivlNK~D~ 198 (257)
|++|+||+|+
T Consensus 149 d~ivlnk~dl 158 (158)
T cd03112 149 DRILLNKTDL 158 (158)
T ss_pred CEEEEecccC
Confidence 9999999995
No 7
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=4.7e-24 Score=181.08 Aligned_cols=179 Identities=20% Similarity=0.262 Sum_probs=136.4
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+...++|+|+||+|||||+|+|+ |.+++++++.+++ ++..+.. ...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~----G~KisIvS~k~QT----TR~~I~G----I~t-------------------- 50 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALV----GQKISIVSPKPQT----TRNRIRG----IVT-------------------- 50 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHh----cCceEeecCCcch----hhhheeE----EEE--------------------
Confidence 3567899999999999999999999 8999999999997 3332221 100
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+.++|||||||++.|......++.+........+|++++|+|+.......+.+ +.+.+.....|
T Consensus 51 ---------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~-----il~~lk~~~~p 116 (298)
T COG1159 51 ---------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEF-----ILEQLKKTKTP 116 (298)
T ss_pred ---------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHH-----HHHHHhhcCCC
Confidence 3468899999999999987777666667777888999999999999855544432 22222223458
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC----CCCCCccccccC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD----ATVNPIKLCSES 256 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~ 256 (257)
.++++||+|.++++.. +..+.+.++...++..++ +|+.++.+++.|++.+... +..+|.+..+.+
T Consensus 117 vil~iNKID~~~~~~~---l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~ 186 (298)
T COG1159 117 VILVVNKIDKVKPKTV---LLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDR 186 (298)
T ss_pred eEEEEEccccCCcHHH---HHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCC
Confidence 9999999999998642 567778888888888888 8999999999888877544 444666655543
No 8
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.89 E-value=4.2e-23 Score=177.45 Aligned_cols=193 Identities=22% Similarity=0.228 Sum_probs=144.4
Q ss_pred ccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecC
Q 025133 17 TTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELA 95 (257)
Q Consensus 17 ~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~ 95 (257)
-..+..++..+...+..++.|+|+||||||||++++++. ....+++++.++.++ .. |..++.. .+. ...+++
T Consensus 89 ~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t-~~-Da~rI~~--~g~---pvvqi~ 161 (290)
T PRK10463 89 NRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQT-VN-DAARIRA--TGT---PAIQVN 161 (290)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCc-HH-HHHHHHh--cCC---cEEEec
Confidence 333445566677888999999999999999999999876 345689999999987 44 6666554 122 467889
Q ss_pred CCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCC-CCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhcc
Q 025133 96 NGCICCTVKHSLVQALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 174 (257)
Q Consensus 96 ~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~ 174 (257)
+||+||....++..++..+. ..+.+++|||+.|. ..|..+. +....+ +.|++...+.. .
T Consensus 162 tG~~Chl~a~mv~~Al~~L~--~~~~d~liIEnvGnLvcPa~fd--------lge~~~----v~vlsV~eg~d------k 221 (290)
T PRK10463 162 TGKGCHLDAQMIADAAPRLP--LDDNGILFIENVGNLVCPASFD--------LGEKHK----VAVLSVTEGED------K 221 (290)
T ss_pred CCCCCcCcHHHHHHHHHHHh--hcCCcEEEEECCCCccCCCccc--------hhhcee----EEEEECccccc------c
Confidence 99999999999999999886 35679999999994 5675431 112222 35555554422 1
Q ss_pred CCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 175 LSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 175 ~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..+|+ .|++.||++|+||+|+++... +.++.+.+.+++++|.++|+ +|++++.++++|++.+
T Consensus 222 plKyp---~~f~~ADIVVLNKiDLl~~~~--~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L 284 (290)
T PRK10463 222 PLKYP---HMFAAASLMLLNKVDLLPYLN--FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWL 284 (290)
T ss_pred chhcc---chhhcCcEEEEEhHHcCcccH--HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHH
Confidence 12244 467889999999999986422 34788888899999999999 6999999999998765
No 9
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.89 E-value=1.4e-22 Score=168.62 Aligned_cols=188 Identities=22% Similarity=0.296 Sum_probs=134.1
Q ss_pred cCcccCCCcceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCcee
Q 025133 22 SNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC 100 (257)
Q Consensus 22 ~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic 100 (257)
.+++.++...+|+++|+||+|||||||+++++.+ ..+.+++++.++++. ++|...+... + ..+.++.+||+|
T Consensus 12 ~~~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~--~~D~~~~~~~--~---~~~~~l~~gcic 84 (207)
T TIGR00073 12 KNRERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVIT--KFDAERLRKY--G---APAIQINTGKEC 84 (207)
T ss_pred HHHHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCC--cccHHHHHHc--C---CcEEEEcCCCcc
Confidence 4455677889999999999999999999999875 335799999999873 4566655431 1 246889999999
Q ss_pred eccchhHHHHHHHHHHhcCCCCEEEEecCC-CCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh
Q 025133 101 CTVKHSLVQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (257)
Q Consensus 101 c~~~~~~~~~l~~~~~~~~~~~~ilIDt~G-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (257)
|....++...+.++. ..++++|||||+| +..+..+. + .....+.|+|+........
T Consensus 85 ~~~~~~~~~~l~~~~--~~~~d~IiIEt~G~l~~~~~~~--------~----~~~~~i~Vvd~~~~d~~~~--------- 141 (207)
T TIGR00073 85 HLDAHMVAHALEDLP--LDDIDLLFIENVGNLVCPADFD--------L----GEHMRVVLLSVTEGDDKPL--------- 141 (207)
T ss_pred cCChHHHHHHHHHhc--cCCCCEEEEecCCCcCCCcccc--------c----ccCeEEEEEecCcccchhh---------
Confidence 976666666665543 2368999999999 43332110 1 1123346888875433211
Q ss_pred HHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 180 ~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....+++.|+++++||+|+.+... .....+...+++.+|.++++ .|++++.|++++++..
T Consensus 142 ~~~~~~~~a~iiv~NK~Dl~~~~~--~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i 202 (207)
T TIGR00073 142 KYPGMFKEADLIVINKADLAEAVG--FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFL 202 (207)
T ss_pred hhHhHHhhCCEEEEEHHHccccch--hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHH
Confidence 122456789999999999986422 12566777788888888887 7999999999988764
No 10
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.87 E-value=3.1e-21 Score=159.32 Aligned_cols=183 Identities=19% Similarity=0.286 Sum_probs=129.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeee-cCCCceeeccchhHH---
Q 025133 34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVE-LANGCICCTVKHSLV--- 108 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~-l~~gcicc~~~~~~~--- 108 (257)
.++++|++|||||||++++++. .+..+++++.++.+. ..+...+.... ...-+.... ..+||.||..+.++.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~--~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT--QEDAEFLVKNS-ALPPERILGVETGGCPHTAIREDASMNL 79 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC--hhHHHHHHHcC-CCCcCceehhhcCCCccceeccCHHHHH
Confidence 5899999999999999999876 445578899999875 23444333211 011112233 379999999998884
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
.+|.++..+..++|+++|||+|..-...+. ..+ .+.+++|+|+.++..... ....|+..+
T Consensus 80 ~~L~~l~~~~~~~D~iiIEt~G~~l~~~~~------~~l-----~~~~i~vvD~~~~~~~~~---------~~~~qi~~a 139 (199)
T TIGR00101 80 EAVAEMEARFPPLEMVFIESGGDNLSATFS------PEL-----ADLTIFVIDVAAGDKIPR---------KGGPGITRS 139 (199)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcccccc------hhh-----hCcEEEEEEcchhhhhhh---------hhHhHhhhc
Confidence 455555543457899999999952111110 111 367899999997765322 123689999
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|++++||+|+.+... ..++.+.+.++.+||.++++ +|++++.|+++++..+
T Consensus 140 d~~~~~k~d~~~~~~--~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i 191 (199)
T TIGR00101 140 DLLVINKIDLAPMVG--ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWI 191 (199)
T ss_pred cEEEEEhhhcccccc--ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHH
Confidence 999999999986311 23788888999999999988 8999999999988765
No 11
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=8.3e-19 Score=151.61 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=106.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.++++|.+|+|||||+|+|+ +.+++++++.++++... +. ....
T Consensus 2 ~V~liG~pnvGKSTLln~L~----~~~~~~vs~~~~TTr~~----i~---------~i~~-------------------- 44 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH----GQKISITSPKAQTTRNR----IS---------GIHT-------------------- 44 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh----CCcEeecCCCCCcccCc----EE---------EEEE--------------------
Confidence 58899999999999999999 67888888888863211 10 0000
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivl 193 (257)
..+.+++|+||||+..+.......+..........+|.+++|+|++........ +...+.....|.++|+
T Consensus 45 ----~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~------i~~~l~~~~~p~ilV~ 114 (270)
T TIGR00436 45 ----TGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEF------VLTKLQNLKRPVVLTR 114 (270)
T ss_pred ----cCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHH------HHHHHHhcCCCEEEEE
Confidence 223568999999987653222111112223345678999999999875433211 2233344567889999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCCCCc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATVNPI 250 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~~~ 250 (257)
||+|+.+.++ ....+ ..+....+..+++ +|++.+.|++++++.+...+++.|+
T Consensus 115 NK~Dl~~~~~---~~~~~-~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 115 NKLDNKFKDK---LLPLI-DKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred ECeeCCCHHH---HHHHH-HHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCC
Confidence 9999985432 12222 2333333443444 8999999999998887655554443
No 12
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=1.3e-18 Score=151.87 Aligned_cols=167 Identities=24% Similarity=0.323 Sum_probs=108.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+..+++++|.+|||||||+|+|+ +.+++++++.++++.. .+. ....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~----g~~~~~vs~~~~tt~~----~i~---------~i~~---------------- 49 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTTRH----RIR---------GIVT---------------- 49 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHh----CCceeecCCCCCcccc----cEE---------EEEE----------------
Confidence 467889999999999999999999 7788888888775211 000 0000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+.+++|+||||+..+.......+..........+|.+++|+|+.......... +...+.+...|.
T Consensus 50 --------~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~-----i~~~l~~~~~pv 116 (292)
T PRK00089 50 --------EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEF-----ILEKLKKVKTPV 116 (292)
T ss_pred --------cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHH-----HHHHHhhcCCCE
Confidence 2346799999999987754433222222334456789999999998732211110 122233335689
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
++|+||+|+....+ .+......+.+..+..+++ .|+..+.++++++..+....
T Consensus 117 ilVlNKiDl~~~~~---~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 117 ILVLNKIDLVKDKE---ELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred EEEEECCcCCCCHH---HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 99999999984321 2344444555555666666 89999999998887764443
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.77 E-value=3.4e-19 Score=140.72 Aligned_cols=152 Identities=22% Similarity=0.244 Sum_probs=98.7
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.++++|.||+|||||+|+|+ |.+ +.+.+-||.++......+.
T Consensus 2 ~ialvG~PNvGKStLfN~Lt----g~~-~~v~n~pG~Tv~~~~g~~~--------------------------------- 43 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT----GAK-QKVGNWPGTTVEKKEGIFK--------------------------------- 43 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH----TTS-EEEEESTTSSSEEEEEEEE---------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHH----CCC-ceecCCCCCCeeeeeEEEE---------------------------------
Confidence 37899999999999999999 666 5678889974322111111
Q ss_pred HHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE
Q 025133 114 LVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi 191 (257)
..+.++.|||+||++.... ..+... ...+ .....|.+++|+||.++...+. +...+..++.|.++
T Consensus 44 ----~~~~~~~lvDlPG~ysl~~~s~ee~v~-~~~l-~~~~~D~ii~VvDa~~l~r~l~-------l~~ql~e~g~P~vv 110 (156)
T PF02421_consen 44 ----LGDQQVELVDLPGIYSLSSKSEEERVA-RDYL-LSEKPDLIIVVVDATNLERNLY-------LTLQLLELGIPVVV 110 (156)
T ss_dssp ----ETTEEEEEEE----SSSSSSSHHHHHH-HHHH-HHTSSSEEEEEEEGGGHHHHHH-------HHHHHHHTTSSEEE
T ss_pred ----ecCceEEEEECCCcccCCCCCcHHHHH-HHHH-hhcCCCEEEEECCCCCHHHHHH-------HHHHHHHcCCCEEE
Confidence 2346688999999665322 112111 1111 1346899999999998755432 23445667889999
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcC
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 240 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~ 240 (257)
++||+|.+.+.......+.+.+.+. ...+..|++++.|+++|.++
T Consensus 111 vlN~~D~a~~~g~~id~~~Ls~~Lg----~pvi~~sa~~~~g~~~L~~~ 155 (156)
T PF02421_consen 111 VLNKMDEAERKGIEIDAEKLSERLG----VPVIPVSARTGEGIDELKDA 155 (156)
T ss_dssp EEETHHHHHHTTEEE-HHHHHHHHT----S-EEEEBTTTTBTHHHHHHH
T ss_pred EEeCHHHHHHcCCEECHHHHHHHhC----CCEEEEEeCCCcCHHHHHhh
Confidence 9999999987765455566666552 22344899999999998764
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=1.9e-18 Score=154.53 Aligned_cols=159 Identities=25% Similarity=0.288 Sum_probs=119.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
|+|+|+|.||+|||||.|+|+ +++.|++.+-||. ++..+.. ..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~----g~r~AIV~D~pGv----TRDr~y~---------~~~------------------- 47 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT----GRRIAIVSDTPGV----TRDRIYG---------DAE------------------- 47 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh----CCeeeEeecCCCC----ccCCccc---------eeE-------------------
Confidence 899999999999999999999 8999999999996 2222221 001
Q ss_pred HHHHhcCCCCEEEEecCCCCCcH--HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 113 QLVQRKERLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~--~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
..+..+.+|||+|+.... .+.+.+ .++.+....++|++++|||+..+....|.. +...+.....|.+
T Consensus 48 -----~~~~~f~lIDTgGl~~~~~~~l~~~i-~~Qa~~Ai~eADvilfvVD~~~Git~~D~~-----ia~~Lr~~~kpvi 116 (444)
T COG1160 48 -----WLGREFILIDTGGLDDGDEDELQELI-REQALIAIEEADVILFVVDGREGITPADEE-----IAKILRRSKKPVI 116 (444)
T ss_pred -----EcCceEEEEECCCCCcCCchHHHHHH-HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCCEE
Confidence 345669999999988533 444433 356677788999999999999988877754 4555666668999
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCC
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~ 245 (257)
+|+||+|....+ .....+.++.-.-++.+|+.++.|+++|++.....+
T Consensus 117 LvvNK~D~~~~e-------~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 117 LVVNKIDNLKAE-------ELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred EEEEcccCchhh-------hhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 999999988543 233344455555566799999999999999986664
No 15
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.76 E-value=3.5e-18 Score=137.15 Aligned_cols=181 Identities=24% Similarity=0.265 Sum_probs=132.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+-.+.|.|++|||||+|+.+++++ ....++++|.+|.-+ ..|...+... .-.....+..|-.|+--.+....+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t--~~Da~~l~~~----~g~~i~~v~TG~~CH~da~m~~~a 86 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT--KEDADRLRKL----PGEPIIGVETGKGCHLDASMNLEA 86 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec--hhhHHHHHhC----CCCeeEEeccCCccCCcHHHHHHH
Confidence 458999999999999999999876 345899999999764 2344444431 112345566666666556778888
Q ss_pred HHHHHHhcCCCCEEEEecCC-CCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 111 LEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
+.++..+....|++|||+.| +..+.... +. -..-|+|+|...+....... +| .+..+|
T Consensus 87 i~~l~~~~~~~Dll~iEs~GNL~~~~sp~--------L~----d~~~v~VidvteGe~~P~K~-----gP----~i~~aD 145 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVGNLVCPFSPD--------LG----DHLRVVVIDVTEGEDIPRKG-----GP----GIFKAD 145 (202)
T ss_pred HHHHhhcCCcCCEEEEecCcceecccCcc--------hh----hceEEEEEECCCCCCCcccC-----CC----ceeEee
Confidence 88888755568999999999 66553221 11 12568999998775432211 22 344599
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|+||+|+++.-. ..++...+..++.||.++++ .+.+++.|+++|++.+
T Consensus 146 llVInK~DLa~~v~--~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i 196 (202)
T COG0378 146 LLVINKTDLAPYVG--ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFI 196 (202)
T ss_pred EEEEehHHhHHHhC--ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHH
Confidence 99999999998755 56899999999999999998 7899999999987654
No 16
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.76 E-value=2.4e-17 Score=145.29 Aligned_cols=183 Identities=17% Similarity=0.171 Sum_probs=119.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccccc------chhhhhc--CCCCceeeeeeecCCCcee
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV------ERAMINE--GEGGALVEEWVELANGCIC 100 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~------d~~~~~~--~~~~~~~~~~~~l~~gcic 100 (257)
+..++.|+|++|||||||++.|... ..+.+++++..||.+ ... |+..+.. ...++++ ...++ |
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s-~~~~gallgd~~r~~~~~~~~~~~~----r~~~~--~ 127 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS-TRTGGSILGDKTRMERLSRHPNAFI----RPSPS--S 127 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc-cccchhhhchHhHHHhhcCCCCeEE----EecCC--c
Confidence 4568999999999999999998764 458899999999986 222 2222321 1112222 12222 5
Q ss_pred eccch--hHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 101 CTVKH--SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 101 c~~~~--~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
|.+.+ ......-+++. ..+++++||||+|+.+..... ...+|.+++|+++.........
T Consensus 128 ~~l~~~a~~~~~~~~~~~-~~g~d~viieT~Gv~qs~~~i-----------~~~aD~vlvv~~p~~gd~iq~~------- 188 (332)
T PRK09435 128 GTLGGVARKTRETMLLCE-AAGYDVILVETVGVGQSETAV-----------AGMVDFFLLLQLPGAGDELQGI------- 188 (332)
T ss_pred ccccchHHHHHHHHHHHh-ccCCCEEEEECCCCccchhHH-----------HHhCCEEEEEecCCchHHHHHH-------
Confidence 66652 22233323332 568999999999998654332 1236889999886554432111
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCC----C-CEEE-EeecCCcChhhhhcCc
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS----L-AHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~----~-a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...+++.+|++|+||+|+.+..........+...+....| + .+++ +|+.++.|+++|++.+
T Consensus 189 --k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I 255 (332)
T PRK09435 189 --KKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAI 255 (332)
T ss_pred --HhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 1237888999999999999765433445666666654442 2 4555 8999999999999877
No 17
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=8.3e-18 Score=135.95 Aligned_cols=176 Identities=16% Similarity=0.216 Sum_probs=125.6
Q ss_pred ccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCc
Q 025133 19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC 98 (257)
Q Consensus 19 ~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gc 98 (257)
.......+.+....|.|+++|++|+|||||||+|++ .++.|-++..||.|..+.- .
T Consensus 11 ~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~---~k~LArtSktPGrTq~iNf---------------f------ 66 (200)
T COG0218 11 TSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTN---QKNLARTSKTPGRTQLINF---------------F------ 66 (200)
T ss_pred EecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhC---CcceeecCCCCCccceeEE---------------E------
Confidence 344555667778999999999999999999999995 3568999999997322111 0
Q ss_pred eeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCC---cHHHHH--hcccccccccceeeeeEEEEEeccchHHHHhhhc
Q 025133 99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLAN---PAPLAS--VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYR 173 (257)
Q Consensus 99 icc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~---~~~~~~--~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~ 173 (257)
.-+..+.|||.||++- |....+ .-.+...+.....+..++.|+|+.......|..
T Consensus 67 -------------------~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~e- 126 (200)
T COG0218 67 -------------------EVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDRE- 126 (200)
T ss_pred -------------------EecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHH-
Confidence 1123377999999653 222211 112345566666799999999999988876653
Q ss_pred cCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCC--EEEEeecCCcChhhhhcCcc
Q 025133 174 HLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLA--HVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 174 ~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a--~i~~s~~~~~~~~~l~~~~~ 242 (257)
+.+++.+...+.++++||+|+++..+..+.+..+...+....++. .++.|+..+.|++++...+.
T Consensus 127 ----m~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~ 193 (200)
T COG0218 127 ----MIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKIL 193 (200)
T ss_pred ----HHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHH
Confidence 567788889999999999999998764444555655555544544 34578888999998877653
No 18
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=1.2e-17 Score=148.73 Aligned_cols=172 Identities=16% Similarity=0.225 Sum_probs=111.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|.+|+|||||+|+|+ +.++++++..++++.+.... ...
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~----~~k~~ivs~k~~tTr~~~~~-------------~~~------------------ 96 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRII----GEKLSIVTPKVQTTRSIITG-------------IIT------------------ 96 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHh----CCceeeccCCCCCccCcEEE-------------EEE------------------
Confidence 3478999999999999999999 66778878777753211100 001
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi 191 (257)
..+.+++|+||||+.++.......+....+.....+|.+++|+|+.......+.. +...+.+...+.++
T Consensus 97 ------~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~-----il~~l~~~~~p~Il 165 (339)
T PRK15494 97 ------LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHN-----ILDKLRSLNIVPIF 165 (339)
T ss_pred ------eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCEEE
Confidence 2235688999999876533222111122233456789999999987643332211 22233444567889
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC----CCCCCccccc
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD----ATVNPIKLCS 254 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~----~~~~~~~~~~ 254 (257)
|+||+|+.+. .+..+.+.++..++...++ +|++++.|++++++.+... +..+|.+..+
T Consensus 166 ViNKiDl~~~-----~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~t 228 (339)
T PRK15494 166 LLNKIDIESK-----YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDIT 228 (339)
T ss_pred EEEhhcCccc-----cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 9999998653 1566677777666666666 8999999998888877444 3345555544
No 19
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.72 E-value=2.6e-17 Score=138.24 Aligned_cols=181 Identities=22% Similarity=0.261 Sum_probs=109.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-----ccchhhhhc--CCCCceeeeeeecCCCceee
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVERAMINE--GEGGALVEEWVELANGCICC 101 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-----~~d~~~~~~--~~~~~~~~~~~~l~~gcicc 101 (257)
+..++.|+|+||+|||||+++|... ..|++++|+.-||.+.. --|+..+.. ...++++.+...-.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~----- 102 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGS----- 102 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SS-----
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCC-----
Confidence 4579999999999999999999764 46999999999986522 124444443 335677765543321
Q ss_pred ccchhHHHHHHHHH--HhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh
Q 025133 102 TVKHSLVQALEQLV--QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (257)
Q Consensus 102 ~~~~~~~~~l~~~~--~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (257)
.+-+.....+.+ ....++|+|||||+|+.+..--.... +|.+++|+-+..+....-.
T Consensus 103 --lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~-----------aD~~v~v~~Pg~GD~iQ~~-------- 161 (266)
T PF03308_consen 103 --LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADM-----------ADTVVLVLVPGLGDEIQAI-------- 161 (266)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTT-----------SSEEEEEEESSTCCCCCTB--------
T ss_pred --CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHh-----------cCeEEEEecCCCccHHHHH--------
Confidence 122222222222 13578999999999999765443222 5788888877755432111
Q ss_pred HHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC-----CCCEEE-EeecCCcChhhhhcCc
Q 025133 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN-----SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 180 ~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~-----~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...-++.+|++|+||.|....+ ....+++..+.... +..+|+ .|+..+.|+++|++.+
T Consensus 162 -KaGimEiaDi~vVNKaD~~gA~---~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i 225 (266)
T PF03308_consen 162 -KAGIMEIADIFVVNKADRPGAD---RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAI 225 (266)
T ss_dssp --TTHHHH-SEEEEE--SHHHHH---HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHH
T ss_pred -hhhhhhhccEEEEeCCChHHHH---HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 1234678999999999966554 34566666665433 235677 7888899999998765
No 20
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=4.2e-17 Score=145.95 Aligned_cols=164 Identities=22% Similarity=0.310 Sum_probs=120.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++|+|.||+|||||+|+|+ ++.-+++++.+|++ +..+ ....+
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~il----geeR~Iv~~~aGTT----RD~I---------~~~~e------------------ 222 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAIL----GEERVIVSDIAGTT----RDSI---------DIEFE------------------ 222 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhc----cCceEEecCCCCcc----ccce---------eeeEE------------------
Confidence 4468999999999999999999 67779999999972 2222 11122
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHH---hcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~---~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+-.|.+|||.|+.....+.+ .+...+.++...+++++++|+||.......+.. +..+....+.+
T Consensus 223 ------~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-----ia~~i~~~g~~ 291 (444)
T COG1160 223 ------RDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-----IAGLIEEAGRG 291 (444)
T ss_pred ------ECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-----HHHHHHHcCCC
Confidence 3355689999999987766554 333345567778999999999999988776643 45566777889
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCccC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.++|+||||++..++ ..++.++..++... .+++++ +|+.++.++..+++....
T Consensus 292 ~vIvvNKWDl~~~~~--~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 292 IVIVVNKWDLVEEDE--ATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred eEEEEEccccCCchh--hHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHH
Confidence 999999999998632 23555555555433 456665 899999999999887643
No 21
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.69 E-value=8.1e-17 Score=144.48 Aligned_cols=163 Identities=24% Similarity=0.289 Sum_probs=116.5
Q ss_pred cCcccCCCccee-EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCcee
Q 025133 22 SNSHENDDVSVG-VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC 100 (257)
Q Consensus 22 ~~~~~~~~~~~~-vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic 100 (257)
....+....+-+ -++|.|.||+|||||+|+|+ +++.||+++-+|+ ++..++....+
T Consensus 206 ~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~----~~d~AIVTdI~GT-------------TRDviee~i~i------ 262 (454)
T COG0486 206 ATAKQGKILREGLKVVIIGRPNVGKSSLLNALL----GRDRAIVTDIAGT-------------TRDVIEEDINL------ 262 (454)
T ss_pred HhhhhhhhhhcCceEEEECCCCCcHHHHHHHHh----cCCceEecCCCCC-------------ccceEEEEEEE------
Confidence 333333333333 37889999999999999999 6778999999998 22333334443
Q ss_pred eccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 101 CTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 101 c~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
.+..+.++||.|+.+.....|.+.+++..+....+|.+++|+|++......+. .
T Consensus 263 ------------------~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~--------~ 316 (454)
T COG0486 263 ------------------NGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL--------A 316 (454)
T ss_pred ------------------CCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH--------H
Confidence 34668899999999999999988888888899999999999999985332221 1
Q ss_pred HHH--HHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 181 AIH--QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 181 ~~~--ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
.+. .-..+.++|+||+|+.++.. ...+ +..+....+.+|++++.|++.|..++
T Consensus 317 ~~~~~~~~~~~i~v~NK~DL~~~~~----~~~~----~~~~~~~~i~iSa~t~~Gl~~L~~~i 371 (454)
T COG0486 317 LIELLPKKKPIIVVLNKADLVSKIE----LESE----KLANGDAIISISAKTGEGLDALREAI 371 (454)
T ss_pred HHHhcccCCCEEEEEechhcccccc----cchh----hccCCCceEEEEecCccCHHHHHHHH
Confidence 122 12346799999999998754 1222 22223334558999999999888776
No 22
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.68 E-value=2.3e-16 Score=124.60 Aligned_cols=161 Identities=22% Similarity=0.319 Sum_probs=101.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|++|||||||+|+|+ +.+++++...++.+. ... ....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~----~~~~~~~~~~~~~~~----~~~---------~~~~------------------- 46 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTTR----NRI---------RGIY------------------- 46 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh----CCceEeccCCCCcee----ceE---------EEEE-------------------
Confidence 4679999999999999999999 556666665544310 000 0000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi 191 (257)
...+.+++++||||+..+..................++.+++|+|+.......... +...+.+.+.+.++
T Consensus 47 -----~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~-----~~~~~~~~~~~~ii 116 (168)
T cd04163 47 -----TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEF-----ILELLKKSKTPVIL 116 (168)
T ss_pred -----EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHH-----HHHHHHHhCCCEEE
Confidence 02246789999999887654332211111223356678999999998762211110 12233334578999
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+||+|+....+ .+..+...+....+..+++ .|++.+.++++++..+
T Consensus 117 v~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 117 VLNKIDLVKDKE---DLLPLLEKLKELGPFAEIFPISALKGENVDELLEEI 164 (168)
T ss_pred EEEchhccccHH---HHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHH
Confidence 999999984322 2455566666666655666 7898999998887654
No 23
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.67 E-value=1.2e-15 Score=129.80 Aligned_cols=182 Identities=21% Similarity=0.234 Sum_probs=116.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-----ccchhhhhcC--CCCceeeeeeecCCCcee
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVERAMINEG--EGGALVEEWVELANGCIC 100 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-----~~d~~~~~~~--~~~~~~~~~~~l~~gcic 100 (257)
.+..++.|+|+||+|||||+.+|..+ ..|.+++|+.-||.+.. --|+..++.. ..++++.+. ++..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~---~srG-- 123 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSS---PSRG-- 123 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeec---CCCc--
Confidence 45569999999999999999999774 56999999999987622 1133333331 234444322 1111
Q ss_pred eccchhHHHHHHHHH--HhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 101 CTVKHSLVQALEQLV--QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 101 c~~~~~~~~~l~~~~--~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
..+.+.....+.+ ....++|+|||||+|..+........ +|.+++|.=+..+.....
T Consensus 124 --~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~-----------aDt~~~v~~pg~GD~~Q~-------- 182 (323)
T COG1703 124 --TLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANM-----------ADTFLVVMIPGAGDDLQG-------- 182 (323)
T ss_pred --cchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhh-----------cceEEEEecCCCCcHHHH--------
Confidence 1222333333322 23679999999999999876544322 477777777665544322
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh------C-CCCEEE-EeecCCcChhhhhcCc
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI------N-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~------~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.....++.+|++|+||.|.-..+. ....+...++.. + +..+++ .++..+.|+++|++++
T Consensus 183 -iK~GimEiaDi~vINKaD~~~A~~---a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai 249 (323)
T COG1703 183 -IKAGIMEIADIIVINKADRKGAEK---AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAI 249 (323)
T ss_pred -HHhhhhhhhheeeEeccChhhHHH---HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHH
Confidence 123457889999999999655432 234444444433 2 334566 6788889999998876
No 24
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=3.7e-16 Score=141.15 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=96.4
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-|+|+|+||||||||+|+|..+ ++ .+++.|++|.......+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~----k~-~vs~~p~TT~~p~~Giv~--------------------------------- 202 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAA----KP-KVADYPFTTLVPNLGVVR--------------------------------- 202 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCC----cc-cccCCCCCccCcEEEEEE---------------------------------
Confidence 6999999999999999999953 33 567777763322111110
Q ss_pred HHHhcCC-CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH--HHHhhhccCCChhHHHHH-----H
Q 025133 114 LVQRKER-LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQ-----I 185 (257)
Q Consensus 114 ~~~~~~~-~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~q-----l 185 (257)
..+ ..++|+||||+.++......+. ...+++..+++.+++|+|+..+. ....... .+...+.+ .
T Consensus 203 ----~~~~~~i~~vDtPGi~~~a~~~~~Lg-~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~---~l~~eL~~~~~~L~ 274 (390)
T PRK12298 203 ----VDDERSFVVADIPGLIEGASEGAGLG-IRFLKHLERCRVLLHLIDIAPIDGSDPVENAR---IIINELEKYSPKLA 274 (390)
T ss_pred ----eCCCcEEEEEeCCCccccccchhhHH-HHHHHHHHhCCEEEEEeccCcccccChHHHHH---HHHHHHHhhhhhhc
Confidence 112 2489999999987542211110 12234567889999999987321 1111100 01111122 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCC-CEEEEeecCCcChhhhhcCccCCCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSL-AHVIRSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~-a~i~~s~~~~~~~~~l~~~~~~~~~ 246 (257)
..|.++|+||+|+.+.++. .+.+....+...+. ..+.+|++++.++++++..+...+.
T Consensus 275 ~kP~IlVlNKiDl~~~~el---~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 275 EKPRWLVFNKIDLLDEEEA---EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred CCCEEEEEeCCccCChHHH---HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 4688999999999865432 22222222333322 2344899999999998877744433
No 25
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.65 E-value=1.1e-15 Score=124.10 Aligned_cols=168 Identities=16% Similarity=0.197 Sum_probs=101.5
Q ss_pred cccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCC
Q 025133 18 THEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANG 97 (257)
Q Consensus 18 ~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~g 97 (257)
.++.-+..+.+..+.+.++|+|.+|+|||||+|+|... ..++.+...+|.+.... ...
T Consensus 4 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~---~~~~~~~~~~~~t~~~~---------------~~~---- 61 (179)
T TIGR03598 4 VKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNR---KKLARTSKTPGRTQLIN---------------FFE---- 61 (179)
T ss_pred EeeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC---CCcccccCCCCcceEEE---------------EEE----
Confidence 34444556677788889999999999999999999842 11233333333211100 000
Q ss_pred ceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcH-------HHHHhcccccccccceeeeeEEEEEeccchHHHHh
Q 025133 98 CICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA-------PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID 170 (257)
Q Consensus 98 cicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~-------~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~ 170 (257)
.+.++.++||||+.... .+.... ...+.....++.+++|+|+.+.....+
T Consensus 62 ---------------------~~~~~~liDtpG~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ii~vvd~~~~~~~~~ 118 (179)
T TIGR03598 62 ---------------------VNDGFRLVDLPGYGYAKVSKEEKEKWQKLI--EEYLEKRENLKGVVLLMDIRHPLKELD 118 (179)
T ss_pred ---------------------eCCcEEEEeCCCCccccCChhHHHHHHHHH--HHHHHhChhhcEEEEEecCCCCCCHHH
Confidence 01257899999975421 111111 122233345678999999986433322
Q ss_pred hhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChh
Q 025133 171 KYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLS 235 (257)
Q Consensus 171 ~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~ 235 (257)
.. +...+.+.+.+.++++||+|+.++++....++.+++.++......+++ +|++++.|++
T Consensus 119 ~~-----~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 119 LE-----MLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HH-----HHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 11 223344456788999999999876544345667777777654344555 8999988763
No 26
>COG2262 HflX GTPases [General function prediction only]
Probab=99.59 E-value=3.5e-15 Score=131.90 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=107.9
Q ss_pred CCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 27 NDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 27 ~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
.....+|.+.++|+.|||||||+|.|..+ .+.+-..-|.+ .+.+.+.+ .+
T Consensus 187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~----~~~~~d~LFAT-LdpttR~~-------------~l------------ 236 (411)
T COG2262 187 RSRSGIPLVALVGYTNAGKSTLFNALTGA----DVYVADQLFAT-LDPTTRRI-------------EL------------ 236 (411)
T ss_pred hcccCCCeEEEEeeccccHHHHHHHHhcc----Ceecccccccc-ccCceeEE-------------Ee------------
Confidence 34568999999999999999999999843 21211222332 22221111 11
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
..+..+++-||+|+.. |..+.+.| ...+.+...+|.+++|||++..... ... ......+..
T Consensus 237 -----------~~g~~vlLtDTVGFI~~LP~~LV~AF--ksTLEE~~~aDlllhVVDaSdp~~~-~~~---~~v~~vL~e 299 (411)
T COG2262 237 -----------GDGRKVLLTDTVGFIRDLPHPLVEAF--KSTLEEVKEADLLLHVVDASDPEIL-EKL---EAVEDVLAE 299 (411)
T ss_pred -----------CCCceEEEecCccCcccCChHHHHHH--HHHHHHhhcCCEEEEEeecCChhHH-HHH---HHHHHHHHH
Confidence 2245689999999765 67777776 4678889999999999999976221 111 112334444
Q ss_pred H---hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 185 I---AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 185 l---~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
+ ..|.++|+||+|++..+. ....+....| ..|++|+.++.|++.|...+..
T Consensus 300 l~~~~~p~i~v~NKiD~~~~~~-------~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~ 353 (411)
T COG2262 300 IGADEIPIILVLNKIDLLEDEE-------ILAELERGSP-NPVFISAKTGEGLDLLRERIIE 353 (411)
T ss_pred cCCCCCCEEEEEecccccCchh-------hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHH
Confidence 4 347899999999998753 2223333335 5788999999999988877643
No 27
>PRK13768 GTPase; Provisional
Probab=99.58 E-value=3e-15 Score=128.10 Aligned_cols=203 Identities=17% Similarity=0.202 Sum_probs=113.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-ccchh-----hhhcCCCCceeeeeeecCCCceeec-
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-GVERA-----MINEGEGGALVEEWVELANGCICCT- 102 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-~~d~~-----~~~~~~~~~~~~~~~~l~~gcicc~- 102 (257)
+.+++|+|++|+||||++..+... ..|+++.++..|++.+. ..... .+.. ..+....-...++.++.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~--~~v~~~~~l~p~~~~~~~~~ 79 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTA--REIMKKYGLGPNGALIASVD 79 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeH--HHHHHHcCCCCchHHHHHHH
Confidence 347899999999999999998753 55889999999988521 11100 0000 0000000112333344443
Q ss_pred cchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH---hcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh
Q 025133 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (257)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~---~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (257)
+...-...+.+.+. ..+.+++++||||..++..... .+. ..+.... .+.+++|+|+.......+..... +.
T Consensus 80 ~~~~~~~~l~~~l~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~--~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~--~l 153 (253)
T PRK13768 80 LLLTKADEIKEEIE-SLDADYVLVDTPGQMELFAFRESGRKLV--ERLSGSS-KSVVVFLIDAVLAKTPSDFVSLL--LL 153 (253)
T ss_pred HHHHHHHHHHHHHH-hcCCCEEEEeCCcHHHHHhhhHHHHHHH--HHHHhcC-CeEEEEEechHHhCCHHHHHHHH--HH
Confidence 11111122222232 4457999999999776543221 111 1111111 68999999997655443321100 01
Q ss_pred H--HHHHHhhcCEEEEeCCCCCCcCCCcchHHHHH------------------------HHHHHhCCCCEEE-EeecCCc
Q 025133 180 E--AIHQIAFADVVILNKVDLVSPERSGDSLDELE------------------------KEIHEINSLAHVI-RSVRCQV 232 (257)
Q Consensus 180 ~--~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~------------------------~~l~~~~~~a~i~-~s~~~~~ 232 (257)
. ...+...+.++|+||+|+.+..+..+....+. +.+++.++..+++ .|+..+.
T Consensus 154 ~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~ 233 (253)
T PRK13768 154 ALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE 233 (253)
T ss_pred HHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc
Confidence 1 11245678899999999998765322111111 2244556665666 8899999
Q ss_pred ChhhhhcCcc
Q 025133 233 DLSEVLNCRA 242 (257)
Q Consensus 233 ~~~~l~~~~~ 242 (257)
++++|++.+.
T Consensus 234 gl~~L~~~I~ 243 (253)
T PRK13768 234 GFDELYAAIQ 243 (253)
T ss_pred CHHHHHHHHH
Confidence 9999988763
No 28
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.57 E-value=1.6e-14 Score=123.02 Aligned_cols=180 Identities=18% Similarity=0.237 Sum_probs=115.3
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+-+.-.+++.|.||+|||||.|.++ |.+++.++....+ ++..+ -.+||
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mi----g~kv~~vS~K~~T----Tr~~i-----------------lgi~t------- 116 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMI----GQKVSAVSRKVHT----TRHRI-----------------LGIIT------- 116 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhh----CCccccccccccc----eeeee-----------------eEEEe-------
Confidence 4566689999999999999999999 8899999988775 22111 12333
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHH----hcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH-
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLAS----VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH- 183 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~----~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~- 183 (257)
.++.++||.||||+..+..... .-..+........+|.++.|+|++.-..++.. .+...+.
T Consensus 117 ---------s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-----~vl~~l~~ 182 (379)
T KOG1423|consen 117 ---------SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-----RVLHMLEE 182 (379)
T ss_pred ---------cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-----HHHHHHHH
Confidence 5678899999999876543321 11123445667889999999999952222110 0111111
Q ss_pred HHhhcCEEEEeCCCCCCcCCCcchHHHHHHHH------------HH---hCC-------------CCEEE-EeecCCcCh
Q 025133 184 QIAFADVVILNKVDLVSPERSGDSLDELEKEI------------HE---INS-------------LAHVI-RSVRCQVDL 234 (257)
Q Consensus 184 ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l------------~~---~~~-------------~a~i~-~s~~~~~~~ 234 (257)
-...|.++|+||+|...+... +-.++..| ++ ..| +-++| +|+..|.|+
T Consensus 183 ys~ips~lvmnkid~~k~k~~---Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gi 259 (379)
T KOG1423|consen 183 YSKIPSILVMNKIDKLKQKRL---LLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGI 259 (379)
T ss_pred HhcCCceeeccchhcchhhhH---HhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCH
Confidence 123578999999998865431 21121111 11 112 22355 899999999
Q ss_pred hhhhcCc----cCCCCCCCccccccCC
Q 025133 235 SEVLNCR----AYDATVNPIKLCSESS 257 (257)
Q Consensus 235 ~~l~~~~----~~~~~~~~~~~~~~~~ 257 (257)
+++..+. ...+-++|.++.||++
T Consensus 260 kdlkqyLmsqa~~gpW~y~a~i~T~~s 286 (379)
T KOG1423|consen 260 KDLKQYLMSQAPPGPWKYPADIVTEES 286 (379)
T ss_pred HHHHHHHHhcCCCCCCCCCcccccccC
Confidence 8877665 4446668888888764
No 29
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.57 E-value=1.7e-15 Score=127.16 Aligned_cols=211 Identities=15% Similarity=0.196 Sum_probs=121.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcc-----cccc-hhhhhcCCCCceeeeeeecCCCceeec
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEE-----IGVE-RAMINEGEGGALVEEWVELANGCICCT 102 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~-----~~~d-~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (257)
+.++++++|..|||||||+.+|..+ ..+...-+|+-||.-. .++| +..+++.. ++..-....++|-+-|.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkE--vMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKE--VMKQYQLGPNGGIVTSL 95 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHH--HHHHhCCCCCcchhhhH
Confidence 4567899999999999999999764 2233345666665420 1333 22222210 00011122233333332
Q ss_pred -c-chhHHHHHHHHHH-hcCCCCEEEEecCCCCCcHHHHHhc-ccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 103 -V-KHSLVQALEQLVQ-RKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 103 -~-~~~~~~~l~~~~~-~~~~~~~ilIDt~G~~~~~~~~~~~-~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
+ .-.+.+.+ +++. +...+++++|||||..+-..+...- .+-..++... ..+++||+|..+...+...+++....
T Consensus 96 NLF~tk~dqv~-~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~-ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 96 NLFATKFDQVI-ELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSF-PTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred HHHHHHHHHHH-HHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcC-CeEEEEEecCCcCCCchhHHHHHHHH
Confidence 1 11222222 2332 3457899999999965533222100 0011222322 45899999999877766666555445
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC----------------------CCCEEE-EeecCCcChh
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN----------------------SLAHVI-RSVRCQVDLS 235 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~----------------------~~a~i~-~s~~~~~~~~ 235 (257)
..++-.-+.|.++++||+|+.+.+-..+++..++.+-..++ ...+.+ +|+.+|.|.+
T Consensus 174 cSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 174 CSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 56667778899999999999987654344443333322222 234455 8999999999
Q ss_pred hhhcCccCCC
Q 025133 236 EVLNCRAYDA 245 (257)
Q Consensus 236 ~l~~~~~~~~ 245 (257)
+++.++....
T Consensus 254 df~~av~~~v 263 (366)
T KOG1532|consen 254 DFFTAVDESV 263 (366)
T ss_pred HHHHHHHHHH
Confidence 9998875543
No 30
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=5.8e-15 Score=130.93 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=94.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
+-|+++|+||||||||+|+|..+ ++. +.+.++++.......+ .+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a----~~~-va~ypfTT~~p~~G~v-------------~~------------------ 202 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAA----KPK-IADYPFTTLHPNLGVV-------------RV------------------ 202 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcC----CCc-cCCCCCceeCceEEEE-------------Ee------------------
Confidence 35899999999999999999853 222 4555554222111100 00
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH--HHHhhhccCCChhHHHHH-----H
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQ-----I 185 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~q-----l 185 (257)
.....++++|+||+.+.......+. ...+++..+++.+++|+|++... ..+.. +...+.+ .
T Consensus 203 -----~~~~~~~i~D~PGli~ga~~~~gLg-~~flrhie~a~vlI~ViD~s~~~s~e~~~~------~~~EL~~~~~~L~ 270 (335)
T PRK12299 203 -----DDYKSFVIADIPGLIEGASEGAGLG-HRFLKHIERTRLLLHLVDIEAVDPVEDYKT------IRNELEKYSPELA 270 (335)
T ss_pred -----CCCcEEEEEeCCCccCCCCccccHH-HHHHHHhhhcCEEEEEEcCCCCCCHHHHHH------HHHHHHHhhhhcc
Confidence 1234589999999875432211111 12345566789999999998532 11111 1111111 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
..|.++|+||+|+.+.++. .........+.. +..-+.+|++++.++++++..+...
T Consensus 271 ~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~-~~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 271 DKPRILVLNKIDLLDEEEE--REKRAALELAAL-GGPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred cCCeEEEEECcccCCchhH--HHHHHHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999865431 111222223322 2233448999999999998877433
No 31
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.56 E-value=1e-15 Score=129.62 Aligned_cols=199 Identities=19% Similarity=0.238 Sum_probs=96.7
Q ss_pred EEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-----ccc-hhhhhcCCCCceeeeeeecCCCceeec--cchh
Q 025133 37 ITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVE-RAMINEGEGGALVEEWVELANGCICCT--VKHS 106 (257)
Q Consensus 37 i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-----~~d-~~~~~~~~~~~~~~~~~~l~~gcicc~--~~~~ 106 (257)
|+|++||||||+++.+.+. ..++++.+++-||+.+. .+| +..+.. ..++.+--...+++-+.|. +...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~--~evm~~~~LGPNGal~~~me~l~~~ 78 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISV--EEVMEEYGLGPNGALIYCMEYLEEN 78 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--H--HHHHTT-T--HHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhh--hhhhhhcCcCCcHHHHHHHHHHHHH
Confidence 6899999999999999874 56889999999999732 122 222211 0011111223344445554 3344
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcc-cccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLW-LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
+ .++.+.+... +.+|+++||||..+...+...+. +-..+....++ ++++++|+....+..+............-++
T Consensus 79 ~-d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~-~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~ 155 (238)
T PF03029_consen 79 I-DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRL-VVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL 155 (238)
T ss_dssp H-HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcce-EEEEEEecccccChhhHHHHHHHHHHHHhhC
Confidence 4 3333333323 45999999999765433222110 01223333333 8999999998877655543221112233557
Q ss_pred hhcCEEEEeCCCCCCcCCCcchH-----------------HHHHHHHHHh---CCCC-E-EEEeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSL-----------------DELEKEIHEI---NSLA-H-VIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l-----------------~~~~~~l~~~---~~~a-~-i~~s~~~~~~~~~l~~~~ 241 (257)
+.|.+.|+||+|++++. ....+ ..+...+.+. .... + +..|+..+.++.+|+..+
T Consensus 156 ~lP~vnvlsK~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 156 ELPHVNVLSKIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp TSEEEEEE--GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred CCCEEEeeeccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence 78999999999999832 00011 2222222221 1222 3 337888888998887654
No 32
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.55 E-value=2.7e-14 Score=127.54 Aligned_cols=156 Identities=21% Similarity=0.330 Sum_probs=97.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+.++++|.+|+|||||+|+|++ .+ .++.+.++++.+.... ...+.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~----~~-~~v~~~~~tT~d~~~~-------------~i~~~-------------- 234 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTG----AD-VYAADQLFATLDPTTR-------------RLDLP-------------- 234 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC----Cc-eeeccCCccccCCEEE-------------EEEeC--------------
Confidence 4568999999999999999999994 34 4555556653322111 11111
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--
Q 025133 110 ALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-- 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-- 185 (257)
.+..+.|+||+|+.. |....+.+ ...+.....+|.+++|+|++........ . .+...+.++
T Consensus 235 ---------~~~~i~l~DT~G~~~~l~~~lie~f--~~tle~~~~ADlil~VvD~s~~~~~~~~-~---~~~~~L~~l~~ 299 (351)
T TIGR03156 235 ---------DGGEVLLTDTVGFIRDLPHELVAAF--RATLEEVREADLLLHVVDASDPDREEQI-E---AVEKVLEELGA 299 (351)
T ss_pred ---------CCceEEEEecCcccccCCHHHHHHH--HHHHHHHHhCCEEEEEEECCCCchHHHH-H---HHHHHHHHhcc
Confidence 234688999999843 55555543 2344456688999999999864322110 0 012234444
Q ss_pred -hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 -~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
..|.++|+||+|+.+..+ +. . +...++ ..+.+|++++.|+++++..+
T Consensus 300 ~~~piIlV~NK~Dl~~~~~----v~---~-~~~~~~-~~i~iSAktg~GI~eL~~~I 347 (351)
T TIGR03156 300 EDIPQLLVYNKIDLLDEPR----IE---R-LEEGYP-EAVFVSAKTGEGLDLLLEAI 347 (351)
T ss_pred CCCCEEEEEEeecCCChHh----HH---H-HHhCCC-CEEEEEccCCCCHHHHHHHH
Confidence 356799999999976432 21 1 111122 23568999999999988765
No 33
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=1.2e-14 Score=133.65 Aligned_cols=161 Identities=22% Similarity=0.279 Sum_probs=101.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
....++++|.+|+|||||+|+|+ +....++...+|++... + .....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll----~~~~~~~~~~~gtt~~~----~---------~~~~~----------------- 217 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALL----GEERVIVSDIAGTTRDS----I---------DTPFE----------------- 217 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCceEEE----E---------EEEEE-----------------
Confidence 34579999999999999999999 44445666666652110 0 00000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHH---HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~---~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+.++.++||||+....... +.+.....+.....+|.+++|+|+.......+.. +.....+.+.
T Consensus 218 -------~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-----i~~~~~~~~~ 285 (435)
T PRK00093 218 -------RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-----IAGLALEAGR 285 (435)
T ss_pred -------ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCC
Confidence 223568899999986544332 2111122234456789999999998765443321 2223334457
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++++||+|+.+.+. ...+...++.. .+.++++ .|++++.+++++++..
T Consensus 286 ~~ivv~NK~Dl~~~~~----~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i 339 (435)
T PRK00093 286 ALVIVVNKWDLVDEKT----MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAI 339 (435)
T ss_pred cEEEEEECccCCCHHH----HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHH
Confidence 8899999999985533 34444444332 2345555 8999999999888764
No 34
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.55 E-value=2.5e-14 Score=112.36 Aligned_cols=152 Identities=21% Similarity=0.232 Sum_probs=90.5
Q ss_pred EEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHHH
Q 025133 36 VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV 115 (257)
Q Consensus 36 ~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~~ 115 (257)
+++|.+|+|||||+++|+ +.+...+...++.+..... ....
T Consensus 1 ~l~G~~~~GKssl~~~l~----~~~~~~~~~~~~~t~~~~~-------------~~~~---------------------- 41 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT----GRRDAIVEDTPGVTRDRIY-------------GEAE---------------------- 41 (157)
T ss_pred CccCCCCCCHHHHHHHHh----CCcEEeecCCCCceeCcee-------------EEEE----------------------
Confidence 478999999999999999 4444555555543111000 0000
Q ss_pred HhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEe
Q 025133 116 QRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 194 (257)
Q Consensus 116 ~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlN 194 (257)
..+..+.++||||...... +...+. .........+|.+++|+|+......... .+...+.+...+.++|+|
T Consensus 42 --~~~~~~~i~DtpG~~~~~~~~~~~~~-~~~~~~~~~~d~ii~v~d~~~~~~~~~~-----~~~~~~~~~~~piiiv~n 113 (157)
T cd01894 42 --WGGREFILIDTGGIEPDDEGISKEIR-EQAELAIEEADVILFVVDGREGLTPADE-----EIAKYLRKSKKPVILVVN 113 (157)
T ss_pred --ECCeEEEEEECCCCCCchhHHHHHHH-HHHHHHHHhCCEEEEEEeccccCCccHH-----HHHHHHHhcCCCEEEEEE
Confidence 1235688999999876543 111111 1112234568899999999753322111 022334455678899999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
|+|+..... . ...+.+.+....+..|++.+.++++++..+
T Consensus 114 K~D~~~~~~----~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 114 KVDNIKEED----E---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred CcccCChHH----H---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 999987642 1 233333333223458999999999887654
No 35
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.54 E-value=2.9e-14 Score=113.53 Aligned_cols=161 Identities=22% Similarity=0.260 Sum_probs=93.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|.+|+|||||+|+|+.. ........++.+. ... .....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~----~~~~~~~~~~~~~----~~~---------~~~~~------------------- 46 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGE----ERVIVSDIAGTTR----DSI---------DVPFE------------------- 46 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCc----cceeccCCCCCcc----Cce---------eeEEE-------------------
Confidence 45899999999999999999842 2233333333210 000 00000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHH---HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~---~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+.++.++||||..+..... +.+.....+......+.+++|+|+......... .+.....+.+.+.
T Consensus 47 -----~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~~~ 116 (174)
T cd01895 47 -----YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-----RIAGLILEEGKAL 116 (174)
T ss_pred -----ECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-----HHHHHHHhcCCCE
Confidence 123458899999976552211 111101112234567999999999865432211 0122233345788
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++++||+|+.+..+ ...+.+.+.+++..+ ..+++ .|++.+.++++++...
T Consensus 117 iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 170 (174)
T cd01895 117 VIVVNKWDLVEKDS--KTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAI 170 (174)
T ss_pred EEEEeccccCCccH--HHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHH
Confidence 99999999987631 124455555554433 34555 7999999999887654
No 36
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.54 E-value=2e-13 Score=119.78 Aligned_cols=187 Identities=19% Similarity=0.177 Sum_probs=102.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc---c--chhhhhcC--CCCceeeeeeecCCCceee
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG---V--ERAMINEG--EGGALVEEWVELANGCICC 101 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~---~--d~~~~~~~--~~~~~~~~~~~l~~gcicc 101 (257)
...+++|+|++|||||||++.|... ..|.+++++..|+..... + ++..+... ..+..+ ..++.+|..-
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 109 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFI---RSMPTRGHLG 109 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCcee---eecCcccccc
Confidence 5678999999999999999999763 458899999999765220 0 11111110 011111 1222221100
Q ss_pred ccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHH
Q 025133 102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (257)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (257)
.........+ +.+. ..++|++||||+|..+...-. ...+|.++++.++...... .. +.
T Consensus 110 ~~~~~~~~~~-~~l~-~~g~D~viidT~G~~~~e~~i-----------~~~aD~i~vv~~~~~~~el-~~------~~-- 167 (300)
T TIGR00750 110 GLSQATRELI-LLLD-AAGYDVIIVETVGVGQSEVDI-----------ANMADTFVVVTIPGTGDDL-QG------IK-- 167 (300)
T ss_pred chhHHHHHHH-HHHH-hCCCCEEEEeCCCCchhhhHH-----------HHhhceEEEEecCCccHHH-HH------HH--
Confidence 0011112222 2222 568999999999987543211 1224667777655533221 11 11
Q ss_pred HHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh-----CCCCE-EEEeecCCcChhhhhcCcc
Q 025133 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI-----NSLAH-VIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 182 ~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~-----~~~a~-i~~s~~~~~~~~~l~~~~~ 242 (257)
-.....++++++||+|+...+........+...+..+ .+..+ +.+|+.++.|+++++..+.
T Consensus 168 ~~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~ 234 (300)
T TIGR00750 168 AGLMEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIE 234 (300)
T ss_pred HHHhhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHH
Confidence 1235678999999999987542100001111111211 11223 4489999999999887763
No 37
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=1.1e-14 Score=134.20 Aligned_cols=159 Identities=20% Similarity=0.167 Sum_probs=93.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-|+++|+||||||||+|+|... +.. +.+.+++|...... .+.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~a----kpk-IadypfTTl~P~lG-------------vv~------------------- 202 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAA----KPK-IADYPFTTLVPNLG-------------VVQ------------------- 202 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcC----Ccc-ccccCcccccceEE-------------EEE-------------------
Confidence 35899999999999999999853 222 35556653221110 001
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH------HHHhhhccCCChhHHH----
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL------FQIDKYRHLSSYPEAI---- 182 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~------~~~~~~~~~~~~~~~~---- 182 (257)
..+..++|+||||+.+.......+. ...+++..+++.+++|+|++... ..+..... .+....
T Consensus 203 -----~~~~~f~laDtPGliegas~g~gLg-~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~--EL~~y~~~l~ 274 (500)
T PRK12296 203 -----AGDTRFTVADVPGLIPGASEGKGLG-LDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEA--ELAAYAPALD 274 (500)
T ss_pred -----ECCeEEEEEECCCCccccchhhHHH-HHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHH--HHHHhhhccc
Confidence 1234688999999876433222111 12345667789999999997421 11111000 000011
Q ss_pred ------HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 183 ------HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 183 ------~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.....|.++|+||+|+.+..+ ..+.+...+++. . .+++ +|+.++.++++|+...
T Consensus 275 ~~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~~~l~~~-g-~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 275 GDLGLGDLAERPRLVVLNKIDVPDARE---LAEFVRPELEAR-G-WPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred ccchhhhhcCCCEEEEEECccchhhHH---HHHHHHHHHHHc-C-CeEEEEECCCCCCHHHHHHHH
Confidence 112468899999999975432 123334444433 2 3455 8999999999887655
No 38
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.52 E-value=9e-14 Score=111.06 Aligned_cols=155 Identities=21% Similarity=0.198 Sum_probs=86.0
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++++|.+|+|||||+|+|... +. .+...++++...... ...
T Consensus 3 v~ivG~~~~GKStl~~~l~~~----~~-~v~~~~~~t~~~~~~-------------~~~--------------------- 43 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA----KP-KIADYPFTTLVPNLG-------------VVR--------------------- 43 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC----Cc-cccCCCccccCCcce-------------EEE---------------------
Confidence 789999999999999999842 21 233333331110000 000
Q ss_pred HHhcCC-CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch---HHHHhhhccCCChhHHHHH-----H
Q 025133 115 VQRKER-LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL---LFQIDKYRHLSSYPEAIHQ-----I 185 (257)
Q Consensus 115 ~~~~~~-~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~---~~~~~~~~~~~~~~~~~~q-----l 185 (257)
..+ ..+.|+||||+.......+.+. ...+.....++.+++|+|+... ...... +...+.+ .
T Consensus 44 ---~~~~~~~~l~DtpG~~~~~~~~~~~~-~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~------~~~~l~~~~~~~~ 113 (170)
T cd01898 44 ---VDDGRSFVVADIPGLIEGASEGKGLG-HRFLRHIERTRLLLHVIDLSGDDDPVEDYKT------IRNELELYNPELL 113 (170)
T ss_pred ---cCCCCeEEEEecCcccCcccccCCch-HHHHHHHHhCCEEEEEEecCCCCCHHHHHHH------HHHHHHHhCcccc
Confidence 112 3678999999753221110000 1112233458899999999865 111111 1111221 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
..|.++|+||+|+.+.... ...+....++.....-+..|++.+.++++++..+
T Consensus 114 ~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 166 (170)
T cd01898 114 EKPRIVVLNKIDLLDEEEL---FELLKELLKELWGKPVFPISALTGEGLDELLRKL 166 (170)
T ss_pred ccccEEEEEchhcCCchhh---HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHH
Confidence 4678999999999876542 2233333433222223448999999999887654
No 39
>PRK11058 GTPase HflX; Provisional
Probab=99.52 E-value=1.1e-13 Score=126.56 Aligned_cols=161 Identities=18% Similarity=0.312 Sum_probs=98.2
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
..+|.++++|.+|+|||||+|+|+ +.++. +.+.++++.+.... ...+
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt----~~~~~-v~~~~~tTld~~~~-------------~i~l--------------- 241 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRIT----EARVY-AADQLFATLDPTLR-------------RIDV--------------- 241 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh----CCcee-eccCCCCCcCCceE-------------EEEe---------------
Confidence 467899999999999999999998 44444 55666653322111 0111
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--
Q 025133 110 ALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-- 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-- 185 (257)
.....++|+||+|+.. |....+.+ ...+.....+|.+++|+|++........ . .+...+.++
T Consensus 242 --------~~~~~~~l~DTaG~~r~lp~~lve~f--~~tl~~~~~ADlIL~VvDaS~~~~~e~l-~---~v~~iL~el~~ 307 (426)
T PRK11058 242 --------ADVGETVLADTVGFIRHLPHDLVAAF--KATLQETRQATLLLHVVDAADVRVQENI-E---AVNTVLEEIDA 307 (426)
T ss_pred --------CCCCeEEEEecCcccccCCHHHHHHH--HHHHHHhhcCCEEEEEEeCCCccHHHHH-H---HHHHHHHHhcc
Confidence 1112578999999743 55555543 2345566789999999999864321110 0 011223333
Q ss_pred -hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 186 -~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
..|.++|+||+|+.+... ..+.. ...-.|. .+.+|++++.|+++++..+...
T Consensus 308 ~~~pvIiV~NKiDL~~~~~-----~~~~~-~~~~~~~-~v~ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 308 HEIPTLLVMNKIDMLDDFE-----PRIDR-DEENKPI-RVWLSAQTGAGIPLLFQALTER 360 (426)
T ss_pred CCCCEEEEEEcccCCCchh-----HHHHH-HhcCCCc-eEEEeCCCCCCHHHHHHHHHHH
Confidence 357799999999975421 11111 1111121 2558999999999998877443
No 40
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.52 E-value=5.2e-14 Score=124.70 Aligned_cols=160 Identities=23% Similarity=0.234 Sum_probs=92.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
+-|+++|+||||||||+++|.... . .+.+.+.++...... ...+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~----~-~va~y~fTT~~p~ig-------------~v~~------------------ 201 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK----P-KIADYPFTTLVPNLG-------------VVRV------------------ 201 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC----c-cccCCCCCccCCEEE-------------EEEe------------------
Confidence 458999999999999999998532 1 234444432211100 0000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH--HHHhhhccCCChhHHHHH-----H
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQ-----I 185 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~q-----l 185 (257)
....++.|+||||+.+.......+. ...+++..+++.+++|+|+.... ...+.... +...+.+ .
T Consensus 202 -----~~~~~~~i~D~PGli~~a~~~~gLg-~~flrhierad~ll~VvD~s~~~~~~~~e~l~~---l~~EL~~~~~~l~ 272 (329)
T TIGR02729 202 -----DDGRSFVIADIPGLIEGASEGAGLG-HRFLKHIERTRVLLHLIDISPLDGRDPIEDYEI---IRNELKKYSPELA 272 (329)
T ss_pred -----CCceEEEEEeCCCcccCCcccccHH-HHHHHHHHhhCEEEEEEcCccccccCHHHHHHH---HHHHHHHhhhhhc
Confidence 1125688999999865432111110 12344566789999999998531 11111100 1111111 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
..|.++|+||+|+.+++. ...+.+.+.+.....-+.+|++.+.++++++..+
T Consensus 273 ~kp~IIV~NK~DL~~~~~----~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I 324 (329)
T TIGR02729 273 EKPRIVVLNKIDLLDEEE----LAELLKELKKALGKPVFPISALTGEGLDELLYAL 324 (329)
T ss_pred cCCEEEEEeCccCCChHH----HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHH
Confidence 468899999999987543 3444444443333333448999999999988765
No 41
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.51 E-value=5.1e-14 Score=129.29 Aligned_cols=157 Identities=21% Similarity=0.199 Sum_probs=99.5
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++++|.+|+|||||+|+|+ +.+.+++...+|.+. +. .. ....
T Consensus 2 i~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~t~--d~--~~---------~~~~--------------------- 43 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLT----GKRDAIVSDTPGVTR--DR--KY---------GDAE--------------------- 43 (429)
T ss_pred EEEECCCCCCHHHHHHHHh----CCCcceecCCCCccc--Cc--eE---------EEEE---------------------
Confidence 7899999999999999999 445567777676421 11 00 0001
Q ss_pred HHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEE
Q 025133 115 VQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (257)
Q Consensus 115 ~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivl 193 (257)
..+..+.++||||+..... +.+.+. .........+|.+++|+|+.......+.. +...+.+.+.+.++|+
T Consensus 44 ---~~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~~~~ad~vl~vvD~~~~~~~~d~~-----i~~~l~~~~~piilVv 114 (429)
T TIGR03594 44 ---WGGREFILIDTGGIEEDDDGLDKQIR-EQAEIAIEEADVILFVVDGREGLTPEDEE-----IAKWLRKSGKPVILVA 114 (429)
T ss_pred ---ECCeEEEEEECCCCCCcchhHHHHHH-HHHHHHHhhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHhCCCEEEEE
Confidence 2234588999999754322 222111 22233456789999999998754443321 3344555677889999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCC
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~ 245 (257)
||+|+.+.+.. . ..+.++.-...+.+|+.++.+++++++.....+
T Consensus 115 NK~D~~~~~~~---~----~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 115 NKIDGKKEDAV---A----AEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred ECccCCccccc---H----HHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence 99999875431 1 113333333345689999999999988775444
No 42
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.50 E-value=4.5e-14 Score=129.66 Aligned_cols=161 Identities=24% Similarity=0.277 Sum_probs=99.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+|+|+. ....++...+|++... + .....
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~----~~~~~~~~~~gtt~~~----~---------~~~~~------------------ 216 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLG----EERVIVSDIAGTTRDS----I---------DIPFE------------------ 216 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHC----CCeeecCCCCCceECc----E---------eEEEE------------------
Confidence 45689999999999999999994 3445555566652211 0 00011
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHH---HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~---~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+..+.++||||+....... +.+.....+.....+|.+++|+|+.......+.. +.....+...+
T Consensus 217 ------~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-----~~~~~~~~~~~ 285 (429)
T TIGR03594 217 ------RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-----IAGLILEAGKA 285 (429)
T ss_pred ------ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCc
Confidence 123358899999986543221 2221122233456789999999998765443321 22233344578
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.++|+||+|++... ...+.+...++... +.++++ .|++++.++++++..+
T Consensus 286 iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i 339 (429)
T TIGR03594 286 LVIVVNKWDLVKDE---KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAI 339 (429)
T ss_pred EEEEEECcccCCCH---HHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHH
Confidence 99999999998321 22455555555433 335555 8999999999888765
No 43
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.50 E-value=9.7e-14 Score=112.48 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=71.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+.+++|+||||.......... ....++.+++|+|+.......... ......+...+.++++||+|+.
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIR--------GLSVSDGAILVVDANEGVQPQTRE-----HLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHH--------HHHhcCEEEEEEECCCCCcHHHHH-----HHHHHHHCCCCeEEEEECCCCc
Confidence 467899999997654332211 123688999999998644321110 1223334467889999999999
Q ss_pred CcCCCcchHHHHHHHHHHhC------------CCCEEE-EeecCCcChhhhhcCccCC
Q 025133 200 SPERSGDSLDELEKEIHEIN------------SLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~------------~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
.+++.....+.+.+.++... ...+++ .|++.+.|+++++......
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 128 GEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred chhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 85543334455555555432 245565 7999999999988776433
No 44
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=6.9e-14 Score=129.91 Aligned_cols=161 Identities=20% Similarity=0.163 Sum_probs=97.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
++|.++|+|.+|+|||||+|+|+ +.+.+++...+|.+. + .+.. ...
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~----~~~~~~v~~~~gvT~--d--~~~~---------~~~----------------- 82 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRIL----GRREAVVEDVPGVTR--D--RVSY---------DAE----------------- 82 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh----CcCcccccCCCCCCE--e--eEEE---------EEE-----------------
Confidence 45889999999999999999999 444466666666411 1 1100 001
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 111 LEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.|+||||+... ..+.+.+. .........+|.+++|+|+.......+.. +...+.....|.
T Consensus 83 -------~~~~~~~l~DT~G~~~~~~~~~~~~~-~~~~~~~~~aD~il~VvD~~~~~s~~~~~-----i~~~l~~~~~pi 149 (472)
T PRK03003 83 -------WNGRRFTVVDTGGWEPDAKGLQASVA-EQAEVAMRTADAVLFVVDATVGATATDEA-----VARVLRRSGKPV 149 (472)
T ss_pred -------ECCcEEEEEeCCCcCCcchhHHHHHH-HHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCE
Confidence 22345789999997632 22221111 11122345689999999998754332211 233344456789
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~ 245 (257)
++|+||+|+...+. ... . +....-...+.+|+.++.|+++++..+....
T Consensus 150 ilV~NK~Dl~~~~~---~~~---~-~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 150 ILAANKVDDERGEA---DAA---A-LWSLGLGEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred EEEEECccCCccch---hhH---H-HHhcCCCCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 99999999865321 111 1 1122222346699999999999988775443
No 45
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=8e-14 Score=120.06 Aligned_cols=161 Identities=22% Similarity=0.256 Sum_probs=92.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+...|.++|.|+||+|||||+++|..+++. |...-|.+ -++. + |.+
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpE----vA~YPFTT-K~i~------------v--------Ghf--------- 210 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPE----VAPYPFTT-KGIH------------V--------GHF--------- 210 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCc----cCCCCccc-ccee------------E--------eee---------
Confidence 457889999999999999999999965432 32323322 1111 0 000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
......+.+|||||+- .|....+.+..+..++-..-.+.|+|++|++....+.-+. +..-+.+....+..
T Consensus 211 --------e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~-Q~~L~~eIk~~f~~ 281 (346)
T COG1084 211 --------ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEE-QISLLEEIKELFKA 281 (346)
T ss_pred --------ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHH-HHHHHHHHHHhcCC
Confidence 0223468899999954 4665554443233332233456899999998654331110 00002222233445
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhh
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSE 236 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~ 236 (257)
+.++|+||+|....+. ++++...+....-.-....++..+.+.+.
T Consensus 282 p~v~V~nK~D~~~~e~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 282 PIVVVINKIDIADEEK----LEEIEASVLEEGGEEPLKISATKGCGLDK 326 (346)
T ss_pred CeEEEEecccccchhH----HHHHHHHHHhhccccccceeeeehhhHHH
Confidence 7899999999997754 56666655544333233455555555543
No 46
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=8e-14 Score=126.89 Aligned_cols=157 Identities=24% Similarity=0.254 Sum_probs=90.2
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-|+++|+||||||||+|+|.++. .. +.+.++++....... ..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak----~k-Ia~ypfTTl~PnlG~-------------v~~------------------- 202 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK----PK-IANYHFTTLVPNLGV-------------VET------------------- 202 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC----Cc-cccCCcceeceEEEE-------------EEE-------------------
Confidence 79999999999999999999542 22 344455422111000 000
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch--HHHHhhhccCCChhHHHH-----HHh
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL--LFQIDKYRHLSSYPEAIH-----QIA 186 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~--~~~~~~~~~~~~~~~~~~-----ql~ 186 (257)
..+..++|+|+||+.+.......+. ...+++..+++.+++|+|++.. ......... +...+. ...
T Consensus 203 ----~~~~~~~laD~PGliega~~~~gLg-~~fLrhier~~llI~VID~s~~~~~dp~e~~~~---i~~EL~~y~~~L~~ 274 (424)
T PRK12297 203 ----DDGRSFVMADIPGLIEGASEGVGLG-HQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEK---INKELKLYNPRLLE 274 (424)
T ss_pred ----eCCceEEEEECCCCcccccccchHH-HHHHHHHhhCCEEEEEEeCCccccCChHHHHHH---HHHHHhhhchhccC
Confidence 1135689999999875332211111 2234566788999999999643 111111000 111111 135
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.|.++|+||+|+.... +.+....+.+. ..-+.+|+.++.++++++..+.
T Consensus 275 kP~IVV~NK~DL~~~~------e~l~~l~~~l~-~~i~~iSA~tgeGI~eL~~~L~ 323 (424)
T PRK12297 275 RPQIVVANKMDLPEAE------ENLEEFKEKLG-PKVFPISALTGQGLDELLYAVA 323 (424)
T ss_pred CcEEEEEeCCCCcCCH------HHHHHHHHHhC-CcEEEEeCCCCCCHHHHHHHHH
Confidence 6889999999974321 22233222222 2233489999999999887764
No 47
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=7.8e-14 Score=129.56 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=96.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..+.++++|.+|+|||||+|+|+. .+..+++..+|++... + .....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~----~~~~~~s~~~gtT~d~----~---------~~~~~----------------- 255 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAG----EERSVVDDVAGTTVDP----V---------DSLIE----------------- 255 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC----CCcccccCCCCccCCc----c---------eEEEE-----------------
Confidence 457899999999999999999994 4445566667752211 1 00111
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHH---HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPL---ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~---~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+..+.|+||||+...... .+.+...........++++++|+|+.......+.. +...+.....
T Consensus 256 -------~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-----~~~~~~~~~~ 323 (472)
T PRK03003 256 -------LGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-----VLSMVIEAGR 323 (472)
T ss_pred -------ECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCC
Confidence 12344679999997532111 11110001112345789999999998654432211 1222233356
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.++|+||+|+.+.+........+...+... .+++++ +|++++.++++++....
T Consensus 324 piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~~~SAk~g~gv~~lf~~i~ 378 (472)
T PRK03003 324 ALVLAFNKWDLVDEDRRYYLEREIDRELAQV-PWAPRVNISAKTGRAVDKLVPALE 378 (472)
T ss_pred CEEEEEECcccCChhHHHHHHHHHHHhcccC-CCCCEEEEECCCCCCHHHHHHHHH
Confidence 7899999999986432111112222223222 345555 89999999999988764
No 48
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.49 E-value=1.5e-13 Score=106.47 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=69.7
Q ss_pred EEecCC-CCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCC
Q 025133 125 LLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPER 203 (257)
Q Consensus 125 lIDt~G-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~ 203 (257)
+||||| +.+...+...+ +.....+|.|++|.|+......+. +.+...+..+.+=|+||+|+.+.+
T Consensus 40 ~IDTPGEyiE~~~~y~aL-----i~ta~dad~V~ll~dat~~~~~~p--------P~fa~~f~~pvIGVITK~Dl~~~~- 105 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHAL-----IVTAQDADVVLLLQDATEPRSVFP--------PGFASMFNKPVIGVITKIDLPSDD- 105 (143)
T ss_pred EEECChhheeCHHHHHHH-----HHHHhhCCEEEEEecCCCCCccCC--------chhhcccCCCEEEEEECccCccch-
Confidence 799999 44444443322 234568899999999986543211 233344566778899999999433
Q ss_pred CcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 204 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 204 ~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
..++..+++|+.-.-.-.+.+|+.++.|+++|.+.+
T Consensus 106 --~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 106 --ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred --hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence 247888888887665533348999999999998654
No 49
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.49 E-value=2e-13 Score=108.10 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh-cCEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~~ 199 (257)
..+.++||||....... .......+|.+++|+|+.......... ......+... +.++++||+|+.
T Consensus 51 ~~~~~~DtpG~~~~~~~--------~~~~~~~ad~ii~V~d~~~~~~~~~~~-----~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 KRLGFIDVPGHEKFIKN--------MLAGAGGIDLVLLVVAADEGIMPQTRE-----HLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred cEEEEEECCChHHHHHH--------HHhhhhcCCEEEEEEECCCCccHhHHH-----HHHHHHHhCCCcEEEEEECcccc
Confidence 45779999997432111 112244689999999997522111100 1112333444 778999999998
Q ss_pred CcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+........+++.+.++... ...+++ .|++.+.++++++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (164)
T cd04171 118 DEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYL 161 (164)
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHH
Confidence 65321122345555555421 223444 8999999999887653
No 50
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.48 E-value=1.7e-13 Score=126.08 Aligned_cols=157 Identities=22% Similarity=0.205 Sum_probs=97.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
|.++++|.+|+|||||+|+|+ +.+.+++...+|.+.+. .. ....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~----~~~~~~v~~~~~~t~d~----~~---------~~~~------------------- 45 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLT----GKRDAIVADTPGVTRDR----IY---------GEAE------------------- 45 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHh----CCCceeeCCCCCCcccc----eE---------EEEE-------------------
Confidence 679999999999999999999 45556666666641111 00 0011
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE
Q 025133 113 QLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi 191 (257)
..+..+.++||||+..... +...+. .........+|.+++|+|+.......+.. +...+.....+.++
T Consensus 46 -----~~~~~~~liDT~G~~~~~~~~~~~~~-~~~~~~~~~ad~il~vvd~~~~~~~~~~~-----~~~~l~~~~~piil 114 (435)
T PRK00093 46 -----WLGREFILIDTGGIEPDDDGFEKQIR-EQAELAIEEADVILFVVDGRAGLTPADEE-----IAKILRKSNKPVIL 114 (435)
T ss_pred -----ECCcEEEEEECCCCCCcchhHHHHHH-HHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCcEEE
Confidence 2235688999999875222 211111 11223345789999999998754333221 23344555778999
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
|+||+|+.+.++ .... +..+.....+.+|+.++.|++++++.+..
T Consensus 115 v~NK~D~~~~~~------~~~~-~~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 115 VVNKVDGPDEEA------DAYE-FYSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred EEECccCccchh------hHHH-HHhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 999999765321 1122 22233222456899999999999887754
No 51
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.48 E-value=1.4e-13 Score=107.97 Aligned_cols=148 Identities=23% Similarity=0.269 Sum_probs=89.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.+++.|++|+|||||+++|. +.+.+...+.++.+..... ....
T Consensus 3 ~i~l~G~~~~GKstli~~l~----~~~~~~~~~~~~~~~~~~~-------------~~~~-------------------- 45 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA----GRDRAIVSDIAGTTRDVIE-------------ESID-------------------- 45 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH----CCceEeccCCCCCccceEE-------------EEEE--------------------
Confidence 47899999999999999998 4444555555553111000 0000
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH-HHhhcCEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-QIAFADVVI 192 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-ql~~~~viv 192 (257)
..+..+.++||||..+.....+............+++.+++|+|+........ ..... ....+.++|
T Consensus 46 ----~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~--------~~~~~~~~~~~vi~v 113 (157)
T cd04164 46 ----IGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEED--------LEILELPADKPIIVV 113 (157)
T ss_pred ----eCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHH--------HHHHHhhcCCCEEEE
Confidence 12346789999997654332211111122234457899999999996332211 11222 345688999
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+||+|+.+.... .. .....+++ .|+..+.++.+++..+
T Consensus 114 ~nK~D~~~~~~~----------~~-~~~~~~~~~~Sa~~~~~v~~l~~~l 152 (157)
T cd04164 114 LNKSDLLPDSEL----------LS-LLAGKPIIAISAKTGEGLDELKEAL 152 (157)
T ss_pred EEchhcCCcccc----------cc-ccCCCceEEEECCCCCCHHHHHHHH
Confidence 999999876531 11 22233444 8899999999887764
No 52
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.47 E-value=1.1e-13 Score=127.69 Aligned_cols=151 Identities=23% Similarity=0.276 Sum_probs=97.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|.+|+|||||+|+|+ +.+.+++.+.+|++.+... ....
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~----~~~~a~v~~~~gtT~d~~~-------------~~i~------------------- 259 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALL----GEERAIVTDIAGTTRDVIE-------------EHIN------------------- 259 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHh----CCCCcccCCCCCcccccEE-------------EEEE-------------------
Confidence 468999999999999999999 4455667777775322111 1111
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-HhhcCEE
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-IAFADVV 191 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-l~~~~vi 191 (257)
..+..+.++||||+.++....+.+.+...+.....+|.+++|+|++......+ ...+.+ ...+.++
T Consensus 260 -----~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~--------~~~l~~~~~~piii 326 (449)
T PRK05291 260 -----LDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEED--------DEILEELKDKPVIV 326 (449)
T ss_pred -----ECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhH--------HHHHHhcCCCCcEE
Confidence 12345789999998876655544333334445677899999999976432211 011111 2457899
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
|+||+|+.+.... . .......+.+|++++.|++++++.+..
T Consensus 327 V~NK~DL~~~~~~----~-------~~~~~~~i~iSAktg~GI~~L~~~L~~ 367 (449)
T PRK05291 327 VLNKADLTGEIDL----E-------EENGKPVIRISAKTGEGIDELREAIKE 367 (449)
T ss_pred EEEhhhccccchh----h-------hccCCceEEEEeeCCCCHHHHHHHHHH
Confidence 9999999865321 1 122222345899999999998888743
No 53
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.47 E-value=1.1e-13 Score=134.33 Aligned_cols=163 Identities=18% Similarity=0.137 Sum_probs=100.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..+-++++|.+|+|||||+|+|+ +.+..++...+|++.+... ....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~----~~~~~~v~~~~gtT~d~~~-------------~~~~----------------- 494 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLT----HEERAVVNDLAGTTRDPVD-------------EIVE----------------- 494 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh----CccccccCCCCCCCcCcce-------------eEEE-----------------
Confidence 45789999999999999999999 4455566667775321110 0111
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHH---HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~---~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+.++.|+||||+....... +.+...........++.+++|+|+.......+.. +.........
T Consensus 495 -------~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-----i~~~~~~~~~ 562 (712)
T PRK09518 495 -------IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-----VMSMAVDAGR 562 (712)
T ss_pred -------ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCC
Confidence 123457899999976432111 1111001122345689999999998764432211 1222333467
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCccC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
|.++|+||+|+.+.+. .+.+.+.+... .++++++ +|++++.|+++++.....
T Consensus 563 piIiV~NK~DL~~~~~----~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~ 618 (712)
T PRK09518 563 ALVLVFNKWDLMDEFR----RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQE 618 (712)
T ss_pred CEEEEEEchhcCChhH----HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999987533 23344334332 2455544 899999999999887633
No 54
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.46 E-value=6e-14 Score=112.52 Aligned_cols=117 Identities=24% Similarity=0.192 Sum_probs=62.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-----HHHhhhccCC-ChhHHHH------HHhh
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-----FQIDKYRHLS-SYPEAIH------QIAF 187 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-----~~~~~~~~~~-~~~~~~~------ql~~ 187 (257)
+..+.|+||||+.+.....+.+. ...+.....++.+++|+|+.... .......... ....... ....
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~-~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLG-NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAK 121 (176)
T ss_pred CCeEEEEeccccchhhhcCCCcc-HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhC
Confidence 45678999999854322111110 01122344589999999998652 1111100000 0000001 1357
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEE-EEeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV-IRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i-~~s~~~~~~~~~l~~~~ 241 (257)
|.++|+||+|+.+... ................+ ..|++.+.++++++...
T Consensus 122 p~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l 172 (176)
T cd01881 122 PVIYVLNKIDLDDAEE----LEEELVRELALEEGAEVVPISAKTEEGLDELIRAI 172 (176)
T ss_pred CeEEEEEchhcCchhH----HHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHH
Confidence 8999999999987643 22221111222233334 48999999999988754
No 55
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.46 E-value=1.5e-13 Score=107.11 Aligned_cols=112 Identities=22% Similarity=0.167 Sum_probs=70.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
..++.++||||+........... .........++.+++++|+.......... +.....+...+.++|+||+|+.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~-~~~~~~~~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGRERE-ELARRVLERADLILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred CCcEEEEECCCCCccccchhhHH-HHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEccccC
Confidence 46789999999776533221100 00111234578999999999765543321 1223344567889999999999
Q ss_pred CcCCCcchHHHH---HHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDEL---EKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~---~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...+. ... ........+..+++ .|+..+.++.+++...
T Consensus 118 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l 159 (163)
T cd00880 118 PEEEE----EELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred ChhhH----HHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHH
Confidence 87542 222 22233445666676 7899899998887654
No 56
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.45 E-value=2.8e-13 Score=131.56 Aligned_cols=161 Identities=24% Similarity=0.218 Sum_probs=100.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+.++|+|.+|+|||||+|+|+ +.+.+++...+|.+. + .+.. ..+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~----~~~~~iv~~~pGvT~--d--~~~~---------~~~---------------- 319 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRIL----GRREAVVEDTPGVTR--D--RVSY---------DAE---------------- 319 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCeeE--E--EEEE---------EEE----------------
Confidence 345789999999999999999999 556677777777521 1 1100 000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+..+.++||||+.... .+...+. .........+|.+++|+|+.......+.. +...+.....|
T Consensus 320 --------~~~~~~~liDT~G~~~~~~~~~~~~~-~~~~~~~~~aD~iL~VvDa~~~~~~~d~~-----i~~~Lr~~~~p 385 (712)
T PRK09518 320 --------WAGTDFKLVDTGGWEADVEGIDSAIA-SQAQIAVSLADAVVFVVDGQVGLTSTDER-----IVRMLRRAGKP 385 (712)
T ss_pred --------ECCEEEEEEeCCCcCCCCccHHHHHH-HHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCC
Confidence 234568899999976421 1111111 12223345789999999998654433321 23344555678
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
.++|+||+|+..... ..... ....-...+.+|+.++.|++++++.+...
T Consensus 386 vIlV~NK~D~~~~~~------~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 386 VVLAVNKIDDQASEY------DAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALDS 434 (712)
T ss_pred EEEEEECcccccchh------hHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHHh
Confidence 999999999875421 11121 12222334668999999999998876543
No 57
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.45 E-value=2.9e-13 Score=111.92 Aligned_cols=158 Identities=21% Similarity=0.351 Sum_probs=89.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
-..+.++|+|++|+|||||+|.|+.. .. ...+.++.+..... . ...+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~----~~-~~~~~~~~t~~~~~------------~-~~~~--------------- 85 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA----DV-YAEDQLFATLDPTT------------R-RLRL--------------- 85 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc----hh-ccCCccceecccee------------E-EEEe---------------
Confidence 44689999999999999999999853 11 11122221110000 0 0000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-
Q 025133 110 ALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA- 186 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~- 186 (257)
.....+.|+||||+.. +....+.+ ...+.....+|.+++|+|+.......+.. .+...+.++.
T Consensus 86 --------~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~~~~~~d~ii~v~D~~~~~~~~~~~----~~~~~l~~~~~ 151 (204)
T cd01878 86 --------PDGREVLLTDTVGFIRDLPHQLVEAF--RSTLEEVAEADLLLHVVDASDPDYEEQIE----TVEKVLKELGA 151 (204)
T ss_pred --------cCCceEEEeCCCccccCCCHHHHHHH--HHHHHHHhcCCeEEEEEECCCCChhhHHH----HHHHHHHHcCc
Confidence 1223688999999754 22222222 11223345689999999998543221110 0223344443
Q ss_pred --hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 187 --FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 187 --~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.+.++|+||+|+..... .. ......+ ...+..|++++.|+++++..+.
T Consensus 152 ~~~~viiV~NK~Dl~~~~~----~~---~~~~~~~-~~~~~~Sa~~~~gi~~l~~~L~ 201 (204)
T cd01878 152 EDIPMILVLNKIDLLDDEE----LE---ERLEAGR-PDAVFISAKTGEGLDELLEAIE 201 (204)
T ss_pred CCCCEEEEEEccccCChHH----HH---HHhhcCC-CceEEEEcCCCCCHHHHHHHHH
Confidence 46699999999987543 11 2233222 2234589999999999887653
No 58
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.45 E-value=8.6e-13 Score=108.05 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=94.6
Q ss_pred cCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccch
Q 025133 26 ENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH 105 (257)
Q Consensus 26 ~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~ 105 (257)
+......+-++++|.+|+|||||+++|+... .++.+...+|.+..+. ..
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t~~~~---------------~~------------- 66 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRK---NLARTSKTPGRTQLIN---------------FF------------- 66 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---CcccccCCCCceeEEE---------------EE-------------
Confidence 3444567789999999999999999999521 1233333344211100 00
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCCc---HHHHHh--cccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLANP---APLASV--LWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~~---~~~~~~--~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
..+.++.|+||||+... ....+. ......+.....++.+++|+|+.......+.. +..
T Consensus 67 ------------~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-----i~~ 129 (196)
T PRK00454 67 ------------EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ-----MIE 129 (196)
T ss_pred ------------ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHH-----HHH
Confidence 01245889999996431 111100 00122333444567888999977533222110 122
Q ss_pred HHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEE-EEeecCCcChhhhhcCc
Q 025133 181 AIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV-IRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i-~~s~~~~~~~~~l~~~~ 241 (257)
.+...+.+.++++||+|+.+..+.....+.+...+... ..++ ..|+..+.++++++..+
T Consensus 130 ~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~Sa~~~~gi~~l~~~i 189 (196)
T PRK00454 130 WLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG--DDEVILFSSLKKQGIDELRAAI 189 (196)
T ss_pred HHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc--CCceEEEEcCCCCCHHHHHHHH
Confidence 33444567789999999987654222233344444433 2334 48999999999988765
No 59
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.44 E-value=9.2e-13 Score=104.88 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+.++.++||||.......... ....+|.+++|+|+.......... ....+.+.+.|.++|+||+|+.
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~--------~~~~~d~il~v~d~~~~~~~~~~~-----~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRAR--------GASLTDIAILVVAADDGVMPQTIE-----AIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHH--------HHhhcCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEEceecc
Confidence 467899999997543332221 123578999999998643211110 1223445667889999999987
Q ss_pred CcCCCcchHHHHHHHHHH--------hCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHE--------INSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~--------~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.... ..+...++. .....+++ .|+..+.|+.+++..+
T Consensus 116 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T cd01887 116 NANP-----ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAI 161 (168)
T ss_pred cccH-----HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHH
Confidence 5421 222222221 11223455 7999999999987765
No 60
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.43 E-value=1e-13 Score=118.71 Aligned_cols=162 Identities=22% Similarity=0.253 Sum_probs=97.8
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCC---CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKH---GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~---~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
..++-+.++||||||||||+|+|.++++ .+....+..+.|+ +..
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~-v~y-------------------------------- 240 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGT-VNY-------------------------------- 240 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccce-eec--------------------------------
Confidence 3455689999999999999999997644 1122222222232 100
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~q 184 (257)
...-++-+.|.||+.+....-..+. ...++++.+++.++||+|.+.+.. ++.....+..-.+.+.+
T Consensus 241 -----------ddf~q~tVADiPGiI~GAh~nkGlG-~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek 308 (366)
T KOG1489|consen 241 -----------DDFSQITVADIPGIIEGAHMNKGLG-YKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK 308 (366)
T ss_pred -----------cccceeEeccCccccccccccCccc-HHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh
Confidence 1112367999999988766544333 345788899999999999987621 11111000000112211
Q ss_pred --HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 185 --IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 185 --l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
...|.++|.||+|+...++ ..+.++...++ ..+.+.+|++.+.++.+++...
T Consensus 309 ~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq---~~~V~pvsA~~~egl~~ll~~l 362 (366)
T KOG1489|consen 309 GLADRPALIVANKIDLPEAEK--NLLSSLAKRLQ---NPHVVPVSAKSGEGLEELLNGL 362 (366)
T ss_pred hhccCceEEEEeccCchhHHH--HHHHHHHHHcC---CCcEEEeeeccccchHHHHHHH
Confidence 2457899999999864432 11233433332 2234558999999999988764
No 61
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.5e-13 Score=122.22 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=105.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
+-++|+|+||+|||||+|+|. ...+++++..+|++ ++ .++...++
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~----~~drsIVSpv~GTT----RD---------aiea~v~~------------------ 313 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALS----REDRSIVSPVPGTT----RD---------AIEAQVTV------------------ 313 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHh----cCCceEeCCCCCcc----hh---------hheeEeec------------------
Confidence 568999999999999999999 56779999999972 22 22222222
Q ss_pred HHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchH--HHHhhhccCCChhHHH-------
Q 025133 113 QLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAI------- 182 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~--~~~~~~~~~~~~~~~~------- 182 (257)
+++.+.|+||.|+.+ .....+.+.+++..+...+.|++++|+||.... .... +...+
T Consensus 314 ------~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~-------i~~~l~~~~~g~ 380 (531)
T KOG1191|consen 314 ------NGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLK-------IARILETEGVGL 380 (531)
T ss_pred ------CCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchH-------HHHHHHHhccce
Confidence 356788999999987 555666666677777889999999999994322 2111 11111
Q ss_pred -----HHHhhcCEEEEeCCCCCCcC-CCcchHHHHHHHHH-HhCCCCEEE--EeecCCcChhhhhcCccC
Q 025133 183 -----HQIAFADVVILNKVDLVSPE-RSGDSLDELEKEIH-EINSLAHVI--RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 183 -----~ql~~~~vivlNK~D~~~~~-~~~~~l~~~~~~l~-~~~~~a~i~--~s~~~~~~~~~l~~~~~~ 243 (257)
...+.+.+++.||+|+.+.- +..+. ...+.. ...+.-+++ +|..++.+++.|..++.-
T Consensus 381 ~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~---~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 381 VVIVNKMEKQRIILVANKSDLVSKIPEMTKI---PVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred EEEeccccccceEEEechhhccCccccccCC---ceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence 11345788899999999872 21110 111111 122233333 688889999988877643
No 62
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.42 E-value=6e-13 Score=104.82 Aligned_cols=108 Identities=21% Similarity=0.209 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHH--HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~--~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.++.++||||....... ...+. ...+.. ..++.+++|+|+........ ....+.+...+.++|+||+|+
T Consensus 43 ~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~-~~~d~vi~v~d~~~~~~~~~-------~~~~~~~~~~~~iiv~NK~Dl 113 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSEDEKVA-RDFLLG-EKPDLIVNVVDATNLERNLY-------LTLQLLELGLPVVVALNMIDE 113 (158)
T ss_pred eEEEEEECCCccccCCCChhHHHH-HHHhcC-CCCcEEEEEeeCCcchhHHH-------HHHHHHHcCCCEEEEEehhhh
Confidence 46889999997543211 00010 111111 46899999999987433211 111223446788999999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
.+...... ......+..+ ..-+.+|+..+.++.+++...
T Consensus 114 ~~~~~~~~---~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 114 AEKRGIKI---DLDKLSELLG-VPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred cccccchh---hHHHHHHhhC-CCeEEEEccCCCCHHHHHHHH
Confidence 87654322 2222222222 222448999999999887654
No 63
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.41 E-value=1.9e-12 Score=102.43 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=66.5
Q ss_pred CEEEEecCCCCCc------HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeC
Q 025133 122 DHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195 (257)
Q Consensus 122 ~~ilIDt~G~~~~------~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK 195 (257)
.+.++||||+... ....... ....+.....++.+++++|........... +...+...+.+.++++||
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-----~~~~l~~~~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKL-IEEYLENRENLKGVVLLIDSRHGPTEIDLE-----MLDWLEELGIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHH-HHHHHHhChhhhEEEEEEEcCcCCCHhHHH-----HHHHHHHcCCCEEEEEEc
Confidence 5789999997642 1111111 112233334567889999987543221110 233445556678999999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+|+.+..+.......+...++...+..+++ .|++.+.++.+++..+
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l 166 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALI 166 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHH
Confidence 999876543233344444444223444554 7899999998887654
No 64
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.41 E-value=6.7e-13 Score=105.76 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=63.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~ 196 (257)
+..+.++||||........... ...++.+++|+|+........... .+.....+ ...|.++++||+
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~~--------~~~~~~~v~vvd~~~~~~~~~~~~---~~~~~~~~~~~~~~p~ilv~NK~ 117 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKY--------YAECHAIIYVIDSTDRERFEESKS---ALEKVLRNEALEGVPLLILANKQ 117 (167)
T ss_pred CEEEEEEECCCChhhHHHHHHH--------hCCCCEEEEEEECchHHHHHHHHH---HHHHHHhChhhcCCCEEEEEEcc
Confidence 4568899999976543333211 235689999999986432211100 01111111 246889999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHh----C-CCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEI----N-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~----~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+... ...+...++.. . ...+++ .|++++.|+++++..+
T Consensus 118 D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 118 DLPDALS----VEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred ccccCCC----HHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 9876533 34445544432 1 223455 7999999999987654
No 65
>PRK09866 hypothetical protein; Provisional
Probab=99.41 E-value=3.3e-12 Score=119.36 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=75.5
Q ss_pred CCCEEEEecCCCCCcHHH-HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh--cCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--ADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~-~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~--~~vivlNK~ 196 (257)
..+++||||||+..+..- +...+. .....+|.|++|+|+.......+.. +...+.+.+. |.++|+||+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~----eqL~eADvVLFVVDat~~~s~~Dee-----Ilk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLN----QQLARASAVLAVLDYTQLKSISDEE-----VREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHH----HHHhhCCEEEEEEeCCCCCChhHHH-----HHHHHHhcCCCCCEEEEEEcc
Confidence 478999999999876322 222221 2466789999999998754433321 2334445543 888999999
Q ss_pred CCCCcCCCcchHHHHHHHHH-----HhCCCCEEE-EeecCCcChhhhhcCccCCCC
Q 025133 197 DLVSPERSGDSLDELEKEIH-----EINSLAHVI-RSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~-----~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~ 246 (257)
|+.+.++ ...+.+...++ ...+...|+ +|++.+.+++.+++.+..+..
T Consensus 300 Dl~dree--ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~ 353 (741)
T PRK09866 300 DQQDRNS--DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGK 353 (741)
T ss_pred cCCCccc--chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCC
Confidence 9975332 12344444432 223466677 899999999999988866544
No 66
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.41 E-value=7.8e-13 Score=108.46 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=67.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.++||||... +.. ..+.....+|.+++|+|+.......... ..........+.++++||+|+.
T Consensus 67 ~~~~~i~DtpG~~~---~~~-----~~~~~~~~~d~vi~VvD~~~~~~~~~~~-----~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 67 NLQITLVDCPGHAS---LIR-----TIIGGAQIIDLMLLVVDATKGIQTQTAE-----CLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred CceEEEEECCCcHH---HHH-----HHHHHHhhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEECcccC
Confidence 56789999999732 221 1122334578999999998753322110 1112222355778999999998
Q ss_pred CcCCCcchHHHHHHHHHHh-----CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 200 SPERSGDSLDELEKEIHEI-----NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~-----~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..++.....+.+.+.++.. ....+++ +|++++.|+++|++.+.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~ 182 (192)
T cd01889 134 PEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLN 182 (192)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHH
Confidence 6543323344454444322 2334555 89999999999988763
No 67
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.39 E-value=1.1e-12 Score=104.59 Aligned_cols=157 Identities=23% Similarity=0.234 Sum_probs=83.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
|.++++|.+|+|||||+|+|.... .. +...++.+...... ..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~----~~-~~~~~~~t~~~~~~-------------~~-------------------- 42 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK----PE-VAPYPFTTKSLFVG-------------HF-------------------- 42 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC----Cc-cCCCCCcccceeEE-------------EE--------------------
Confidence 678999999999999999998531 11 11122211110000 00
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHH-hccccccccc-ceeeeeEEEEEeccchHH-HHhhhccCCChhHHHHHH--hh
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLAS-VLWLDDQLES-AVRLDSIITVVDAKNLLF-QIDKYRHLSSYPEAIHQI--AF 187 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~-~~~~~~~~~~-~~~~~~vi~vvDa~~~~~-~~~~~~~~~~~~~~~~ql--~~ 187 (257)
...+..+.|+||||..+...... .+. ...+.. ....+.+++|+|+..... ...... .+...+.+. ..
T Consensus 43 ----~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~---~~~~~l~~~~~~~ 114 (168)
T cd01897 43 ----DYKYLRWQVIDTPGLLDRPLEERNTIE-MQAITALAHLRAAVLFLFDPSETCGYSLEEQL---SLFEEIKPLFKNK 114 (168)
T ss_pred ----ccCceEEEEEECCCcCCccccCCchHH-HHHHHHHHhccCcEEEEEeCCcccccchHHHH---HHHHHHHhhcCcC
Confidence 01235688999999743110000 000 000000 122478999999975321 111100 012222233 56
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++|+||+|+.+..+ +....... +.. ..+++ .|++++.|+++++..+
T Consensus 115 pvilv~NK~Dl~~~~~----~~~~~~~~-~~~-~~~~~~~Sa~~~~gi~~l~~~l 163 (168)
T cd01897 115 PVIVVLNKIDLLTFED----LSEIEEEE-ELE-GEEVLKISTLTEEGVDEVKNKA 163 (168)
T ss_pred CeEEEEEccccCchhh----HHHHHHhh-hhc-cCceEEEEecccCCHHHHHHHH
Confidence 7899999999987543 22222322 222 23444 8999999999998754
No 68
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.39 E-value=7.8e-13 Score=99.59 Aligned_cols=114 Identities=28% Similarity=0.277 Sum_probs=66.9
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++|.|++|+|||||+|+|++ .+.+.+...++.+.... .....
T Consensus 2 V~iiG~~~~GKSTlin~l~~----~~~~~~~~~~~~T~~~~-------------~~~~~--------------------- 43 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG----KKLAKVSNIPGTTRDPV-------------YGQFE--------------------- 43 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT----STSSEESSSTTSSSSEE-------------EEEEE---------------------
T ss_pred EEEECCCCCCHHHHHHHHhc----cccccccccccceeeee-------------eeeee---------------------
Confidence 78999999999999999994 33445665555421110 00111
Q ss_pred HHhcCCCCEEEEecCCCCCcHHHHHh-cccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEE
Q 025133 115 VQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (257)
Q Consensus 115 ~~~~~~~~~ilIDt~G~~~~~~~~~~-~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivl 193 (257)
..+..+.|+||||+......... -.....++....++.+++|+|+.......... +...++ -..+.++|+
T Consensus 44 ---~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~-----~~~~l~-~~~~~i~v~ 114 (116)
T PF01926_consen 44 ---YNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKN-----ILRELK-NKKPIILVL 114 (116)
T ss_dssp ---ETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHH-----HHHHHH-TTSEEEEEE
T ss_pred ---eceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-----HHHHHh-cCCCEEEEE
Confidence 12345689999998875332210 01122344556789999999988732211110 112222 345778899
Q ss_pred eC
Q 025133 194 NK 195 (257)
Q Consensus 194 NK 195 (257)
||
T Consensus 115 NK 116 (116)
T PF01926_consen 115 NK 116 (116)
T ss_dssp ES
T ss_pred cC
Confidence 98
No 69
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.39 E-value=5e-13 Score=115.69 Aligned_cols=162 Identities=23% Similarity=0.245 Sum_probs=99.8
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
+.++|+||+||||||+.+..+++. |....|.+ +.-. -|-+.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPK----IadYpFTT-L~Pn--------------------LGvV~~------------- 203 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPK----IADYPFTT-LVPN--------------------LGVVRV------------- 203 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCc----ccCCcccc-ccCc--------------------ccEEEe-------------
Confidence 789999999999999999976442 23333322 1000 000000
Q ss_pred HHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHH--HHHhhcCE
Q 025133 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAI--HQIAFADV 190 (257)
Q Consensus 115 ~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~--~ql~~~~v 190 (257)
..+..+++-|-||+.+....-.-+. .+.+++..+..++++|+|.+.... +.........-...+ .-...+.+
T Consensus 204 ---~~~~sfv~ADIPGLIEGAs~G~GLG-~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~i 279 (369)
T COG0536 204 ---DGGESFVVADIPGLIEGASEGVGLG-LRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRI 279 (369)
T ss_pred ---cCCCcEEEecCcccccccccCCCcc-HHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceE
Confidence 1245689999999987655433332 345778889999999999985432 111110000000111 22356889
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+|+||+|+...++ .++.+.+.+.+...+...+ +|+.++.++++|+...
T Consensus 280 vv~NKiD~~~~~e---~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~ 328 (369)
T COG0536 280 VVLNKIDLPLDEE---ELEELKKALAEALGWEVFYLISALTREGLDELLRAL 328 (369)
T ss_pred EEEeccCCCcCHH---HHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHH
Confidence 9999999665542 3677777777655544443 8999999998877654
No 70
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.38 E-value=2.2e-12 Score=102.69 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=64.7
Q ss_pred EEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH-HHhhcCEEEEeCCCCCCcC
Q 025133 125 LLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-QIAFADVVILNKVDLVSPE 202 (257)
Q Consensus 125 lIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-ql~~~~vivlNK~D~~~~~ 202 (257)
++||||..... .+...+ ......+|.+++|+|+......... .... ....+.++++||+|+.+.+
T Consensus 41 ~iDtpG~~~~~~~~~~~~-----~~~~~~ad~il~v~d~~~~~s~~~~--------~~~~~~~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHAL-----ITTLQDVDMLIYVHGANDPESRLPA--------GLLDIGVSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCCHHHHHHH-----HHHHhcCCEEEEEEeCCCcccccCH--------HHHhccCCCCeEEEEEccccCccc
Confidence 69999965432 222211 1224578999999999865432111 1111 1234678999999986532
Q ss_pred CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 203 RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 203 ~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
.+.+..++++.....+++ +|++++.++++++......
T Consensus 108 -----~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 108 -----VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred -----HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHh
Confidence 456667676665444565 8999999999999876443
No 71
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.38 E-value=2.2e-12 Score=100.28 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=61.4
Q ss_pred EEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcC
Q 025133 124 ILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 202 (257)
Q Consensus 124 ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~ 202 (257)
.++||||..... .+... .......+|.+++|+|+.+...... .........|.++|+||+|+.+..
T Consensus 38 ~~iDt~G~~~~~~~~~~~-----~~~~~~~ad~vilv~d~~~~~s~~~--------~~~~~~~~~p~ilv~NK~Dl~~~~ 104 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSA-----LIVTAADADVIALVQSATDPESRFP--------PGFASIFVKPVIGLVTKIDLAEAD 104 (142)
T ss_pred eeecCchhhhhhHHHHHH-----HHHHhhcCCEEEEEecCCCCCcCCC--------hhHHHhccCCeEEEEEeeccCCcc
Confidence 488999963211 11111 1122457899999999976554321 112222345889999999987543
Q ss_pred CCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 203 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 203 ~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
. ..+...+.++..+...-+..|++++.++++++..+
T Consensus 105 ~---~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 105 V---DIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred c---CHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 2 24455555555433222348999999999988654
No 72
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.36 E-value=6.3e-12 Score=97.79 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=63.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
..+.++||||............ ..........|.++.|+|+.......... +.....+ ..|.++++||+|+..
T Consensus 50 ~~~~~~D~~G~~~~~~~~~~~~-~~~~~~i~~~d~~~~v~~~~~~~~~~~~~-----~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 50 YKFNLLDTAGQEDYRAIRRLYY-RAVESSLRVFDIVILVLDVEEILEKQTKE-----IIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred EEEEEEECCCcccchHHHHHHH-hhhhEEEEEEEEeeeehhhhhHhHHHHHH-----HHHhccc-CCcEEEEEEcccCCc
Confidence 4577999999655444332211 22223344566677767766544221111 1111122 568899999999987
Q ss_pred cCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
.. ........+...+....+..|+..+.++.+++..+
T Consensus 123 ~~----~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 123 AK----LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred ch----hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 53 13445555555544444458999999999887653
No 73
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.36 E-value=2e-12 Score=125.74 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=93.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|.+|+|||||+|+|... +. .+.+-+|.++..... ...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~----~~-~vgn~pGvTve~k~g-------------~~~------------------- 46 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGA----RQ-RVGNWAGVTVERKEG-------------QFS------------------- 46 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC----CC-ccCCCCCceEeeEEE-------------EEE-------------------
Confidence 46899999999999999999853 21 345556642211000 000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHH------HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 113 QLVQRKERLDHILLETTGLANPAP------LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~------~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
..+.++.++||||...... ..+... .. .-.....|.+++|+|+++...... +...+.+.+
T Consensus 47 -----~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~-~~-~l~~~~aD~vI~VvDat~ler~l~-------l~~ql~e~g 112 (772)
T PRK09554 47 -----TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA-CH-YILSGDADLLINVVDASNLERNLY-------LTLQLLELG 112 (772)
T ss_pred -----cCceEEEEEECCCccccccccccccHHHHHH-HH-HHhccCCCEEEEEecCCcchhhHH-------HHHHHHHcC
Confidence 2345688999999764321 111111 11 111236799999999987544321 222344567
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.|.++++||+|+.+........+.+ ++......+.+|+..+.|++++.+.+.
T Consensus 113 iPvIvVlNK~Dl~~~~~i~id~~~L----~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 113 IPCIVALNMLDIAEKQNIRIDIDAL----SARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred CCEEEEEEchhhhhccCcHHHHHHH----HHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 8999999999988654432222333 222222234489999999998887763
No 74
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.35 E-value=2.2e-12 Score=105.52 Aligned_cols=111 Identities=20% Similarity=0.289 Sum_probs=69.9
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 197 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D 197 (257)
.....+.||||||..+..... ......+|.+++|||+..+....... +.....+.+.|.++++||+|
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~--------~~~~~~~D~ailvVda~~g~~~~~~~-----~l~~~~~~~~p~ivvlNK~D 133 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEM--------IRGLRQADIAILVVDANDGIQPQTEE-----HLKILRELGIPIIVVLNKMD 133 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHH--------HHHHTTSSEEEEEEETTTBSTHHHHH-----HHHHHHHTT-SEEEEEETCT
T ss_pred ccccceeecccccccceeecc--------cceecccccceeeeeccccccccccc-----ccccccccccceEEeeeecc
Confidence 345678899999964322111 12244579999999998765543321 34455667788999999999
Q ss_pred CCCcCCCcchHHHHHHHH-HHhC--C--CCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEI-HEIN--S--LAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l-~~~~--~--~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.. .+..+.++++...+ +... + ..+++ .|+.++.|+++|++...
T Consensus 134 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~ 183 (188)
T PF00009_consen 134 LIE-KELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALV 183 (188)
T ss_dssp SSH-HHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred chh-hhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHH
Confidence 993 22223344444223 3332 1 24555 89999999999987653
No 75
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.34 E-value=8e-12 Score=102.93 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D 197 (257)
.+.++.||||||... +.. ........+|.+++|+|+.......... +...+...+.+ .++++||+|
T Consensus 63 ~~~~i~~iDtPG~~~---~~~-----~~~~~~~~~D~~ilVvda~~g~~~~~~~-----~~~~~~~~~~~~iIvviNK~D 129 (195)
T cd01884 63 ANRHYAHVDCPGHAD---YIK-----NMITGAAQMDGAILVVSATDGPMPQTRE-----HLLLARQVGVPYIVVFLNKAD 129 (195)
T ss_pred CCeEEEEEECcCHHH---HHH-----HHHHHhhhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCcEEEEEeCCC
Confidence 356789999999753 221 1123455789999999998764432211 23344555566 457899999
Q ss_pred CCCcCCCcc-hHHHHHHHHHHhC---CCCEEE-EeecCCcChh
Q 025133 198 LVSPERSGD-SLDELEKEIHEIN---SLAHVI-RSVRCQVDLS 235 (257)
Q Consensus 198 ~~~~~~~~~-~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~ 235 (257)
++..++..+ ..+++...++++. ..++++ +|+..+.+..
T Consensus 130 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 130 MVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 985443211 2335666666542 235555 8999887753
No 76
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.33 E-value=4.4e-12 Score=116.60 Aligned_cols=122 Identities=25% Similarity=0.264 Sum_probs=75.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++++|.+|+|||||+|+|+. ...+++...+|++.... .....
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~----~~~aivs~~pgtTrd~~-------------~~~i~------------------- 247 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLK----QDRAIVSDIKGTTRDVV-------------EGDFE------------------- 247 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhC----CCCcccCCCCCcEEEEE-------------EEEEE-------------------
Confidence 3578999999999999999994 44456666677522111 11111
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEE
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 192 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~viv 192 (257)
..+..+.++||||+.+.....+...+.........+|.+++|+|+.......+. +.........|.++|
T Consensus 248 -----~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~------~l~~~~~~~~piIlV 316 (442)
T TIGR00450 248 -----LNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF------LIIDLNKSKKPFILV 316 (442)
T ss_pred -----ECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH------HHHHHhhCCCCEEEE
Confidence 123446799999987765544433222333445678999999999764322111 111112224577899
Q ss_pred EeCCCCCCc
Q 025133 193 LNKVDLVSP 201 (257)
Q Consensus 193 lNK~D~~~~ 201 (257)
+||+|+...
T Consensus 317 ~NK~Dl~~~ 325 (442)
T TIGR00450 317 LNKIDLKIN 325 (442)
T ss_pred EECccCCCc
Confidence 999999654
No 77
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.33 E-value=1.7e-11 Score=103.12 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=71.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.||||||......-. . ..+.. ...|.+++|+|+.......+.. +...+...+.|.++|+||+|+
T Consensus 82 ~~~~i~liDtpG~~~~~~~~--~---~~~~~-~~~D~~llVvda~~g~~~~d~~-----~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTT--L---FGLTG-YAPDYAMLVVAANAGIIGMTKE-----HLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCcHHHHHHH--H---Hhhcc-cCCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEECccc
Confidence 35668899999964322111 1 01111 3578999999998765443321 344556667788999999999
Q ss_pred CCcCCCcchHHHHHHHHHH------------------------hCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHE------------------------INSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~------------------------~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++.++..+.+..+.+.++. .....+++ +|+.++.|+++|...+
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L 218 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL 218 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH
Confidence 8766544555666666652 11233666 7999999999887655
No 78
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.32 E-value=5.3e-11 Score=93.75 Aligned_cols=141 Identities=23% Similarity=0.272 Sum_probs=81.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC--CCce---eeeeeecCCCceeeccchh
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE--GGAL---VEEWVELANGCICCTVKHS 106 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~--~~~~---~~~~~~l~~gcicc~~~~~ 106 (257)
++.+.|+.|+||||++..+... ..+.++.++..|++..... ........ .... -.....+..|+.+......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSG-GAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRA 79 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcc-cchhcCceEhhheecCCCceEEEcCCcCcccccchh
Confidence 3788999999999999999764 4588999999998652211 11111000 0000 0012233333333222233
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
....+ +.+. ..++|++||||+|....... + ...+|.++.|+.++....+ .......++
T Consensus 80 ~~~~~-~~~~-~~~~D~iiIDtaG~~~~~~~---~--------~~~Ad~~ivv~tpe~~D~y---------~~~k~~~~~ 137 (148)
T cd03114 80 TPEVI-RVLD-AAGFDVIIVETVGVGQSEVD---I--------ASMADTTVVVMAPGAGDDI---------QAIKAGIME 137 (148)
T ss_pred HHHHH-HHHH-hcCCCEEEEECCccChhhhh---H--------HHhCCEEEEEECCCchhHH---------HHhhhhHhh
Confidence 33333 3333 35899999999997633211 1 1235778888888733222 112235677
Q ss_pred hcCEEEEeCCC
Q 025133 187 FADVVILNKVD 197 (257)
Q Consensus 187 ~~~vivlNK~D 197 (257)
.+|++++||+|
T Consensus 138 ~~~~~~~~k~~ 148 (148)
T cd03114 138 IADIVVVNKAD 148 (148)
T ss_pred hcCEEEEeCCC
Confidence 79999999997
No 79
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=99.31 E-value=1.4e-12 Score=105.77 Aligned_cols=160 Identities=18% Similarity=0.291 Sum_probs=105.4
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccc-----ccc-hhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVE-RAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~-----~~d-~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
..+.||.||||||+.+.+..+ ..|+..-+++-||+.+. .+| |.+++- ++++.+-....++|-+.|. +.
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsv--dDVmEdl~~GPNGgLv~cm--Ey 81 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISV--DDVMEDLDLGPNGGLVYCM--EY 81 (273)
T ss_pred EEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccH--HHHHHHhccCCCccchhHH--HH
Confidence 578999999999999999875 55888889998887532 122 233332 2333334456677888884 33
Q ss_pred HHHHHHHHHHhcC--CCCEEEEecCCCCC---cHHHHHhcccccccccc-eeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 107 LVQALEQLVQRKE--RLDHILLETTGLAN---PAPLASVLWLDDQLESA-VRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 107 ~~~~l~~~~~~~~--~~~~ilIDt~G~~~---~~~~~~~~~~~~~~~~~-~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
+...+..+....+ .-+|+++|+||..+ ..+++..+. ++++.+ .++ .++|++|+.......++.++-.....
T Consensus 82 l~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv--~hl~~~~F~~-c~Vylldsqf~vD~~KfiSG~lsAls 158 (273)
T KOG1534|consen 82 LLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIV--EHLKQWNFNV-CVVYLLDSQFLVDSTKFISGCLSALS 158 (273)
T ss_pred HHHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHH--HHHhcccCce-eEEEEeccchhhhHHHHHHHHHHHHH
Confidence 4444544443333 66999999999443 444443332 223332 344 78999999876666565544333344
Q ss_pred HHHHHhhcCEEEEeCCCCCCc
Q 025133 181 AIHQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~~ 201 (257)
...+++.|++-|++|.|+++.
T Consensus 159 AMi~lE~P~INvlsKMDLlk~ 179 (273)
T KOG1534|consen 159 AMISLEVPHINVLSKMDLLKD 179 (273)
T ss_pred HHHHhcCcchhhhhHHHHhhh
Confidence 567788999999999999986
No 80
>PRK04213 GTP-binding protein; Provisional
Probab=99.30 E-value=9.8e-12 Score=102.44 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=88.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..+.+++.|.+|+|||||+|+|... + ......+|. +..... .
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~----~-~~~~~~~~~----t~~~~~-----------~------------------ 49 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGK----K-VRVGKRPGV----TRKPNH-----------Y------------------ 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC----C-CccCCCCce----eeCceE-----------E------------------
Confidence 3467899999999999999999842 2 112233332 110000 0
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcH-------HHHHhcccccccc-cceeeeeEEEEEeccchHHHHhhhccC------C
Q 025133 111 LEQLVQRKERLDHILLETTGLANPA-------PLASVLWLDDQLE-SAVRLDSIITVVDAKNLLFQIDKYRHL------S 176 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~-------~~~~~~~~~~~~~-~~~~~~~vi~vvDa~~~~~~~~~~~~~------~ 176 (257)
..+ ++.++||||+.... .....+. ...+. ....++.+++|+|+.......+..... .
T Consensus 50 -------~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~ 120 (201)
T PRK04213 50 -------DWG-DFILTDLPGFGFMSGVPKEVQEKIKDEI-VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDV 120 (201)
T ss_pred -------eec-ceEEEeCCccccccccCHHHHHHHHHHH-HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHH
Confidence 011 47899999963211 1111110 11122 334578999999997543211110000 0
Q ss_pred ChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCC----CE-EEEeecCCcChhhhhcCccCCCC
Q 025133 177 SYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSL----AH-VIRSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 177 ~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~----a~-i~~s~~~~~~~~~l~~~~~~~~~ 246 (257)
.+...+.....|.++|+||+|+.+..+ ...+++...+....+. .+ +.+|++++ |+++++..+.-...
T Consensus 121 ~l~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 121 EMFDFLRELGIPPIVAVNKMDKIKNRD--EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHHHHHHcCCCeEEEEECccccCcHH--HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 012222334568899999999976531 1234444433210011 13 44899999 99999887754433
No 81
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.29 E-value=9.2e-12 Score=103.54 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D 197 (257)
.+..+.|+||||..+..... ......+|.+++|+|+.......... ........+.+. ++|+||+|
T Consensus 75 ~~~~~~liDTpG~~~~~~~~--------~~~~~~ad~~llVvD~~~~~~~~~~~-----~~~~~~~~~~~~iIvviNK~D 141 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNM--------VTGASTADLAILLVDARKGVLEQTRR-----HSYILSLLGIRHVVVAVNKMD 141 (208)
T ss_pred CCceEEEEECCcHHHHHHHH--------HHhhhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCCcEEEEEEchh
Confidence 35678999999964321111 12345689999999998654322110 112233334344 55799999
Q ss_pred CCCcCC--CcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhc
Q 025133 198 LVSPER--SGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 198 ~~~~~~--~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~ 239 (257)
+....+ .......+...++.++ +..+++ +|++++.++.+...
T Consensus 142 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~~ 187 (208)
T cd04166 142 LVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRSE 187 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCCC
Confidence 975432 1112334445455544 233444 89999999876553
No 82
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.29 E-value=7e-12 Score=103.89 Aligned_cols=116 Identities=16% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch-HHHHhhhccCCChhHHHHHHhh-cCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~ 198 (257)
..+.|+||||.. .+.. ..+.....+|.+++|+|+... ...... .........+. +.++++||+|+
T Consensus 83 ~~i~~iDtPG~~---~~~~-----~~~~~~~~~D~~llVvd~~~~~~~~~t~-----~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHE---ILMA-----TMLSGAAVMDGALLLIAANEPCPQPQTS-----EHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChH---HHHH-----HHHHhhhcCCEEEEEEECCCCCCCcchH-----HHHHHHHHcCCCcEEEEEEchhc
Confidence 568999999942 2221 223345568999999999863 111000 01112222333 45779999999
Q ss_pred CCcCCCcchHHHHHHHHHHh-CCCCEEE-EeecCCcChhhhhcCccCCCCCCC
Q 025133 199 VSPERSGDSLDELEKEIHEI-NSLAHVI-RSVRCQVDLSEVLNCRAYDATVNP 249 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~-~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~~ 249 (257)
.+..+....++.+...++.. ....+++ +|++++.|+++++..+....++.|
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 87543222234454544432 1234454 899999999999988866565544
No 83
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.29 E-value=5.5e-12 Score=118.06 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=101.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..+++.|-||+||||++|+|.... ..+.|=||.|+.--.. ..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-----q~VgNwpGvTVEkkeg-------------~~-------------------- 45 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-----QKVGNWPGVTVEKKEG-------------KL-------------------- 45 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-----ceecCCCCeeEEEEEE-------------EE--------------------
Confidence 348999999999999999999542 4567777752211100 00
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 113 QLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
+..+.++-+||.||.+.... ..|... +.+-.....|+++.|+||++....+.. ...+..++.|.+
T Consensus 46 ----~~~~~~i~ivDLPG~YSL~~~S~DE~Va--r~~ll~~~~D~ivnVvDAtnLeRnLyl-------tlQLlE~g~p~i 112 (653)
T COG0370 46 ----KYKGHEIEIVDLPGTYSLTAYSEDEKVA--RDFLLEGKPDLIVNVVDATNLERNLYL-------TLQLLELGIPMI 112 (653)
T ss_pred ----EecCceEEEEeCCCcCCCCCCCchHHHH--HHHHhcCCCCEEEEEcccchHHHHHHH-------HHHHHHcCCCeE
Confidence 03345688999999664221 111111 111123567999999999987654332 223445678999
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+++|++|........-+.+++.+.+. .+++ .+++++.|+++++..+..
T Consensus 113 laLNm~D~A~~~Gi~ID~~~L~~~LG-----vPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 113 LALNMIDEAKKRGIRIDIEKLSKLLG-----VPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred EEeccHhhHHhcCCcccHHHHHHHhC-----CCEEEEEeecCCCHHHHHHHHHH
Confidence 99999999887655455566655553 4555 789999999999887743
No 84
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.28 E-value=1.2e-11 Score=100.71 Aligned_cols=149 Identities=19% Similarity=0.169 Sum_probs=85.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++++|.+|+|||||++++... +.... .+. .+.. ... ..
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~----~~~~~--~~t--~~~~------------~~~-~~------------------- 57 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKND----RLAQH--QPT--QHPT------------SEE-LA------------------- 57 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC----CCccc--CCc--cccc------------eEE-EE-------------------
Confidence 56889999999999999999842 22111 111 1100 000 00
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~ 189 (257)
..+..+.++||||........... ...++.+++|+|+........... .+...+. ....|.
T Consensus 58 -----~~~~~~~~~D~~G~~~~~~~~~~~--------~~~ad~ii~vvD~~~~~~~~~~~~---~l~~l~~~~~~~~~pi 121 (184)
T smart00178 58 -----IGNIKFTTFDLGGHQQARRLWKDY--------FPEVNGIVYLVDAYDKERFAESKR---ELDALLSDEELATVPF 121 (184)
T ss_pred -----ECCEEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECCcHHHHHHHHH---HHHHHHcChhhcCCCE
Confidence 123567899999976544333211 235799999999986432111100 0111111 124578
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhC----------CCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEIN----------SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~----------~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|+||+|+..... .+++.+.+.-.. +...++ .|+..+.|++++++.+
T Consensus 122 liv~NK~Dl~~~~~----~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl 180 (184)
T smart00178 122 LILGNKIDAPYAAS----EDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred EEEEeCccccCCCC----HHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence 99999999864322 455555552111 122344 7999999999888765
No 85
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.27 E-value=1.6e-11 Score=98.76 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~D 197 (257)
..+.++||||........... ....+.+++|+|+........... . +...+. ....|.++|+||+|
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~p~iiv~nK~D 126 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNY--------FESTDALIWVVDSSDRLRLDDCKR-E--LKELLQEERLAGATLLILANKQD 126 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHHH-H--HHHHHhChhhcCCCEEEEEECcc
Confidence 457899999975433332211 235789999999987532211100 0 111111 12357788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..... .+++...++.. ....+++ .|++++.|+++++...
T Consensus 127 l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 127 LPGALS----EEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred cccCCC----HHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 976432 34555544322 1233555 7999999999988654
No 86
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.25 E-value=7.2e-11 Score=95.12 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+....... ....+|.+++|+|+.......... ......+...+.++|+||+|+.
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~--------~~~~ad~~i~v~D~~~~~~~~~~~-----~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSR--------SLAACEGALLLVDATQGVEAQTLA-----NFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred cEEEEEEECCCChhhHHHHHH--------HHHhcCeEEEEEECCCCccHhhHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence 456789999998765443321 123578999999998643221110 0111223346789999999986
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
+... ....+.+.+.+. . +...++ .|++++.++++++......
T Consensus 133 ~~~~-~~~~~~~~~~~~-~-~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 133 SADP-ERVKQQIEDVLG-L-DPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred cCCH-HHHHHHHHHHhC-C-CcccEEEeeccCCCCHHHHHHHHHhh
Confidence 5321 011222322221 1 222344 8999999999998876543
No 87
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.25 E-value=1.1e-11 Score=117.89 Aligned_cols=148 Identities=17% Similarity=0.153 Sum_probs=86.5
Q ss_pred ecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHHHHhc
Q 025133 39 GFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRK 118 (257)
Q Consensus 39 G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~~~~~ 118 (257)
|.+|+|||||+|+|.+. + ..+.+.+|.+...... ... .
T Consensus 1 G~pNvGKSSL~N~Ltg~----~-~~v~n~pG~Tv~~~~~-------------~i~------------------------~ 38 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGA----N-QTVGNWPGVTVEKKEG-------------KLG------------------------F 38 (591)
T ss_pred CCCCCCHHHHHHHHhCC----C-CeecCCCCeEEEEEEE-------------EEE------------------------E
Confidence 88999999999999843 2 2355666642211110 001 1
Q ss_pred CCCCEEEEecCCCCCcHHH--HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCC
Q 025133 119 ERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKV 196 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~--~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~ 196 (257)
.+..+.++||||....... .+... ..+......|.+++|+|+++...... ........+.|.++++||+
T Consensus 39 ~~~~i~lvDtPG~~~~~~~s~~e~v~--~~~l~~~~aDvvI~VvDat~ler~l~-------l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 39 QGEDIEIVDLPGIYSLTTFSLEEEVA--RDYLLNEKPDLVVNVVDASNLERNLY-------LTLQLLELGIPMILALNLV 109 (591)
T ss_pred CCeEEEEEECCCccccCccchHHHHH--HHHHhhcCCCEEEEEecCCcchhhHH-------HHHHHHhcCCCEEEEEehh
Confidence 2234789999997653221 11110 11111235799999999987543221 1112233457889999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.++..... .. +.+.+... .+++ +|++++.|++++++...
T Consensus 110 Dl~~~~~i~~---d~-~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 110 DEAEKKGIRI---DE-EKLEERLG-VPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred HHHHhCCChh---hH-HHHHHHcC-CCEEEEECCCCCCHHHHHHHHH
Confidence 9976544211 22 22333323 3444 89999999999998774
No 88
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.24 E-value=3.4e-11 Score=95.10 Aligned_cols=107 Identities=18% Similarity=0.123 Sum_probs=63.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~ 196 (257)
+..+.++||||..........+ ....+.+++|+|+........... .+.....+ -..+.+++.||+
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~i~v~D~~~~~~~~~~~~---~~~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHY--------YENTNGIIFVVDSSDRERIEEAKE---ELHKLLNEEELKGVPLLIFANKQ 110 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHH--------hccCCEEEEEEECCCHHHHHHHHH---HHHHHHhCcccCCCcEEEEeecc
Confidence 3568899999965443332211 124689999999986532211100 01111111 235778899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHh--C-CCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEI--N-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~--~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..... .+++...++.. + ...+++ .|++.+.|+++++..+
T Consensus 111 D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 111 DLPGALS----VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCccccC----HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 9987543 45555555432 1 223455 7999999999987654
No 89
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.24 E-value=5.1e-11 Score=94.21 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=61.1
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HHHh--hcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQIA--FADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~ql~--~~~vivlNK~D~ 198 (257)
.+.++||||..........+ ....+.+++|+|+......... . .+...+ .+.. .|.++++||+|+
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSY--------IRDSSVAVVVYDITNRQSFDNT-D---KWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEECCCcHHHHHHHHHH--------hccCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhCCCCCEEEEEEEChhc
Confidence 46799999965443333221 2346889999999864332111 0 011112 2222 578899999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....+. ..+......+..+ ..++ .|++.+.++++++..+
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 118 SDKRQV--STEEGEKKAKELN--AMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred cccCcc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHHHHHHH
Confidence 654331 2333444333332 4444 8999999999988755
No 90
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.24 E-value=6.6e-11 Score=93.54 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=61.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH-----HHhhcCEEEEe
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-----QIAFADVVILN 194 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-----ql~~~~vivlN 194 (257)
+..+.++||||........+.. ...++.+++|+|+........... . +..... .-..|.++|+|
T Consensus 44 ~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~D~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~p~iiv~N 112 (162)
T cd04157 44 NLSFTAFDMSGQGKYRGLWEHY--------YKNIQGIIFVIDSSDRLRLVVVKD-E--LELLLNHPDIKHRRVPILFFAN 112 (162)
T ss_pred CEEEEEEECCCCHhhHHHHHHH--------HccCCEEEEEEeCCcHHHHHHHHH-H--HHHHHcCcccccCCCCEEEEEe
Confidence 3457799999976544443321 235789999999986543211000 0 011111 12467899999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHh--CC-CCEEE-EeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEI--NS-LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~--~~-~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+|+.+... ..++...+... .. ...++ .|++++.|+++++..+
T Consensus 113 K~Dl~~~~~----~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 113 KMDLPDALT----AVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred CccccCCCC----HHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 999976432 23333333211 11 12345 7999999999998754
No 91
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.23 E-value=3.8e-11 Score=103.75 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=64.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.||||||..+..... ......+|.+++|+|+.......... ......+.+.|.++++||+|+
T Consensus 62 ~~~~i~liDTPG~~df~~~~--------~~~l~~aD~ailVVDa~~g~~~~t~~-----~~~~~~~~~~p~ivviNK~D~ 128 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEV--------ERSLRVLDGAVAVFDAVAGVEPQTET-----VWRQADRYNVPRIAFVNKMDR 128 (270)
T ss_pred CCEEEEEEECCCcHHHHHHH--------HHHHHHcCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECCCC
Confidence 45678999999976533221 12334578999999998765432221 233445556789999999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCC-cChhhhhcCccC
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQ-VDLSEVLNCRAY 243 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~-~~~~~l~~~~~~ 243 (257)
.+.+. ...++.++..++. .+...++ +|+..+ .++-+++....+
T Consensus 129 ~~a~~-~~~~~~l~~~l~~-~~~~~~~Pisa~~~f~g~vd~~~~~a~ 173 (270)
T cd01886 129 TGADF-FRVVEQIREKLGA-NPVPLQLPIGEEDDFRGVVDLIEMKAL 173 (270)
T ss_pred CCCCH-HHHHHHHHHHhCC-CceEEEeccccCCCceEEEEccccEEE
Confidence 76431 1234555554432 2333333 555554 245455544443
No 92
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.23 E-value=7.8e-11 Score=92.01 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
.++.++|+||..........+ ...++.+++|+|+..... +.... .+...+.+.. .+.++++||+|
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~-~~~~~---~~~~~~~~~~~~~~p~ivv~nK~D 116 (159)
T cd00154 49 VKLQIWDTAGQERFRSITPSY--------YRGAHGAILVYDITNRES-FENLD---KWLKELKEYAPENIPIILVGNKID 116 (159)
T ss_pred EEEEEEecCChHHHHHHHHHH--------hcCCCEEEEEEECCCHHH-HHHHH---HHHHHHHHhCCCCCcEEEEEEccc
Confidence 457799999975433333221 234799999999987432 12111 0222233322 57788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..+.+ ...+.+...... . ..+++ .|+..+.++++++..+
T Consensus 117 ~~~~~~--~~~~~~~~~~~~-~-~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 117 LEDQRQ--VSTEEAQQFAKE-N-GLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred cccccc--ccHHHHHHHHHH-c-CCeEEEEecCCCCCHHHHHHHH
Confidence 973332 224555555544 2 33455 7889999999887653
No 93
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.23 E-value=1.8e-11 Score=96.84 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=60.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.+.||+|.......... .....+.+++|+|+.+......... .+...+.. -..|.++|+||+|
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~--------~~~~~~~iv~v~D~~~~~~~~~~~~---~~~~~~~~~~~~~~piilv~nK~D 112 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKC--------YLENTDGLVYVVDSSDEARLDESQK---ELKHILKNEHIKGVPVVLLANKQD 112 (160)
T ss_pred eEEEEEECCCCHhHHHHHHH--------HhccCCEEEEEEECCcHHHHHHHHH---HHHHHHhchhhcCCCEEEEEECcc
Confidence 45789999997643332221 1234688999999987542111000 01111111 2457899999999
Q ss_pred CCCcCCCcchHHHHHHHHH--HhC--CCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIH--EIN--SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~--~~~--~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..... ..++...++ ... ...+++ .|++++.|+++++..+
T Consensus 113 l~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i 157 (160)
T cd04156 113 LPGALT----AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157 (160)
T ss_pred cccCcC----HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHH
Confidence 865322 233333331 111 122455 6999999999988764
No 94
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.23 E-value=4.1e-11 Score=94.78 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=61.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.++||||........... ....+.+++++|....... ...... +...... ...|.++|+||+|
T Consensus 48 ~~~~i~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~-~~~~~~--~~~~~~~~~~~~~piiiv~NK~D 116 (164)
T cd04139 48 VQLNILDTAGQEDYAAIRDNY--------HRSGEGFLLVFSITDMESF-TATAEF--REQILRVKDDDNVPLLLVGNKCD 116 (164)
T ss_pred EEEEEEECCChhhhhHHHHHH--------hhcCCEEEEEEECCCHHHH-HHHHHH--HHHHHHhcCCCCCCEEEEEEccc
Confidence 457899999976544433221 2235678888887653321 111000 1112222 3568899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+ ..........+..+ .+++ .|++++.|+++++...
T Consensus 117 ~~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 117 LEDKRQ--VSSEEAANLARQWG--VPYVETSAKTRQNVEKAFYDL 157 (164)
T ss_pred cccccc--cCHHHHHHHHHHhC--CeEEEeeCCCCCCHHHHHHHH
Confidence 987322 11333444444433 3455 8999999999998764
No 95
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.23 E-value=2.1e-11 Score=95.36 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=59.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~D 197 (257)
..+.++||||..........+ ....+.+++|+|+........... .+..... ....|.++|+||+|
T Consensus 44 ~~~~~~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p~iiv~nK~D 112 (159)
T cd04159 44 VTLKVWDLGGQPRFRSMWERY--------CRGVNAIVYVVDAADRTALEAAKN---ELHDLLEKPSLEGIPLLVLGNKND 112 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHHH---HHHHHHcChhhcCCCEEEEEeCcc
Confidence 457799999975444333221 234688999999986543211100 0011111 12347788999999
Q ss_pred CCCcCCCcchHHHHHHHHH--Hh-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIH--EI-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~--~~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+... ...+...+. .. ....+++ .|++++.++++++..+
T Consensus 113 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 113 LPGALS----VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred ccCCcC----HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHH
Confidence 876543 222322221 11 1223444 7999999999887654
No 96
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.22 E-value=1.1e-10 Score=92.99 Aligned_cols=107 Identities=14% Similarity=0.074 Sum_probs=61.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||........+. .....+.+++++|+.+...... .. .+...+.+. ..|.++|.||+|
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~--------~~~~~d~~llv~d~~~~~s~~~-~~---~~~~~i~~~~~~~~p~ivv~nK~D 119 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQS--------YYRSANGAIIAYDITRRSSFES-VP---HWIEEVEKYGASNVVLLLIGNKCD 119 (165)
T ss_pred EEEEEEECCChHHHHHHHHH--------HhccCCEEEEEEECcCHHHHHh-HH---HHHHHHHHhCCCCCcEEEEEECcc
Confidence 35789999995432222221 1234689999999987644211 10 022222222 235688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..+......+......-+..|++++.++++++...
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 120 LEEQREV--LFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred ccccccc--CHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 9865432 23344444443332223448999999999887654
No 97
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.22 E-value=2.9e-11 Score=95.94 Aligned_cols=105 Identities=15% Similarity=0.084 Sum_probs=61.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--------HhhcCEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--------IAFADVVI 192 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--------l~~~~viv 192 (257)
..+.++||+|..........+ ....+.+++|+|+.+....... . .+...+.+ ...|.++|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~~ilv~D~~~~~s~~~~-~---~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04119 49 VRVNFFDLSGHPEYLEVRNEF--------YKDTQGVLLVYDVTDRQSFEAL-D---SWLKEMKQEGGPHGNMENIVVVVC 116 (168)
T ss_pred EEEEEEECCccHHHHHHHHHH--------hccCCEEEEEEECCCHHHHHhH-H---HHHHHHHHhccccccCCCceEEEE
Confidence 456799999975443332211 2346899999999865332111 0 01111211 12467889
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.||+|+.+... ...+....+.+..+ .+++ .|++++.|+++++..+
T Consensus 117 ~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 117 ANKIDLTKHRA--VSEDEGRLWAESKG--FKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred EEchhcccccc--cCHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHH
Confidence 99999974322 12344444444432 4555 7999999999988765
No 98
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.22 E-value=4.3e-11 Score=94.71 Aligned_cols=106 Identities=16% Similarity=0.092 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.++||||........... ...++.+++|+|+........... .+...+.+ -..|.++|+||+|
T Consensus 43 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd04151 43 LKFQVWDLGGQTSIRPYWRCY--------YSNTDAIIYVVDSTDRDRLGTAKE---ELHAMLEEEELKGAVLLVFANKQD 111 (158)
T ss_pred EEEEEEECCCCHHHHHHHHHH--------hcCCCEEEEEEECCCHHHHHHHHH---HHHHHHhchhhcCCcEEEEEeCCC
Confidence 457899999986543332211 235789999999986532211000 01111111 1457899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+... ..++...+.... ...+++ +|++++.|+++++...
T Consensus 112 l~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 112 MPGALS----EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCCCC----HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 875432 233433332111 112355 8999999999988754
No 99
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.21 E-value=2.7e-11 Score=97.20 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=63.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~~~vivlNK~ 196 (257)
+..+.++||||........... ....+.+++|+|+++.... +.... .+.....+ . ..+.+++.||+
T Consensus 42 ~~~i~l~Dt~G~~~~~~~~~~~--------~~~ad~ii~V~D~s~~~s~-~~~~~--~~~~~~~~~~~~~~piilv~NK~ 110 (169)
T cd04158 42 NLKFTIWDVGGKHKLRPLWKHY--------YLNTQAVVFVVDSSHRDRV-SEAHS--ELAKLLTEKELRDALLLIFANKQ 110 (169)
T ss_pred CEEEEEEECCCChhcchHHHHH--------hccCCEEEEEEeCCcHHHH-HHHHH--HHHHHhcChhhCCCCEEEEEeCc
Confidence 3567899999976544333221 2346899999999864322 11100 01122222 1 14678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCC---C--CEEE-EeecCCcChhhhhcCccCCCC
Q 025133 197 DLVSPERSGDSLDELEKEIHEINS---L--AHVI-RSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~---~--a~i~-~s~~~~~~~~~l~~~~~~~~~ 246 (257)
|+..... .+.+...++ .+. . ..++ .|++++.|+++++..+.-...
T Consensus 111 Dl~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 111 DVAGALS----VEEMTELLS-LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred CcccCCC----HHHHHHHhC-CccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 9864322 344544442 211 1 1333 699999999999887643333
No 100
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.21 E-value=3.1e-10 Score=89.82 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||||..+...+.+.. ....+.+++|+|+...... ..... +...+.+. ..|.+++.||+
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~-~~~~~---~~~~~~~~~~~~~~piiiv~NK~ 117 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQY--------MRTGEGFLLVFSVTDRGSF-EEVDK---FHTQILRVKDRDEFPMILVGNKA 117 (164)
T ss_pred EEEEEEECCCCcchhHHHHHH--------HhhCCEEEEEEECCCHHHH-HHHHH---HHHHHHHHhCCCCCCEEEEeeCc
Confidence 346789999976655444322 1246899999999875432 21111 12222222 34778899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..+... ..+...+..+..+ .+++ .|++.+.|+++++...
T Consensus 118 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 118 DLEHQRKV--SREEGQELARKLK--IPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred ccccccee--cHHHHHHHHHHcC--CcEEEeeCCCCCCHHHHHHHH
Confidence 99765431 2334445444432 2444 8999999999988655
No 101
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.21 E-value=1.8e-10 Score=91.78 Aligned_cols=106 Identities=11% Similarity=0.103 Sum_probs=61.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||+|..........+ ....+.+++|+|+....... ... .+...+.++ ..+.++|.||+|
T Consensus 56 ~~~~~~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~-~~~---~~~~~l~~~~~~~~~~i~v~NK~D 123 (169)
T cd04114 56 IKLQIWDTAGQERFRSITQSY--------YRSANALILTYDITCEESFR-CLP---EWLREIEQYANNKVITILVGNKID 123 (169)
T ss_pred EEEEEEECCCcHHHHHHHHHH--------hcCCCEEEEEEECcCHHHHH-HHH---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 346789999964333222211 23468899999998653321 110 011122222 245588999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
+....+. .......+.+..+..-+..|++++.|+.+++..+
T Consensus 124 ~~~~~~i---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 124 LAERREV---SQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred ccccccc---CHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 8765442 2333444555555333348999999999988764
No 102
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.21 E-value=7.5e-11 Score=97.09 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=89.2
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC-CCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.++++|.+|+|||||+|.|+. .+....... .+. +.... .. ...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg----~~~~~~~~~~~~~----T~~~~--------~~-~~~------------------- 45 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILG----REVFESKLSASSV----TKTCQ--------KE-SAV------------------- 45 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhC----CCccccccCCCCc----ccccc--------ee-eEE-------------------
Confidence 378999999999999999994 332222211 111 10000 00 000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---
Q 025133 113 QLVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--- 185 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--- 185 (257)
..+..+.+|||||+.+.. .+...+. .........++.+++|+|+.++...... ....+.++
T Consensus 46 -----~~~~~i~viDTPG~~d~~~~~~~~~~~i~-~~~~~~~~g~~~illVi~~~~~t~~d~~------~l~~l~~~fg~ 113 (196)
T cd01852 46 -----WDGRRVNVIDTPGLFDTSVSPEQLSKEIV-RCLSLSAPGPHAFLLVVPLGRFTEEEEQ------AVETLQELFGE 113 (196)
T ss_pred -----ECCeEEEEEECcCCCCccCChHHHHHHHH-HHHHhcCCCCEEEEEEEECCCcCHHHHH------HHHHHHHHhCh
Confidence 234568899999988652 2222211 1112223567899999999874332111 22222222
Q ss_pred --hhcCEEEEeCCCCCCcCCCcchH----HHHHHHHHHhCCCCEEEEe----ecCCcChhhhhcCccCCCCC
Q 025133 186 --AFADVVILNKVDLVSPERSGDSL----DELEKEIHEINSLAHVIRS----VRCQVDLSEVLNCRAYDATV 247 (257)
Q Consensus 186 --~~~~vivlNK~D~~~~~~~~~~l----~~~~~~l~~~~~~a~i~~s----~~~~~~~~~l~~~~~~~~~~ 247 (257)
-...++++|++|.+...+....+ ..+...+++.......+-. +..+..+.+|+..+.....+
T Consensus 114 ~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 114 KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 24567899999988765322211 3445555554443333321 33456777887776554443
No 103
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.21 E-value=8.9e-11 Score=96.36 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=60.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||.......... ....++.+++|+|+.......... +.....+.+.+.++|+||+|+.
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~--------~~~~~d~~ilV~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVER--------VLSMVDGVLLLVDASEGPMPQTRF-----VLKKALELGLKPIVVINKIDRP 130 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHH--------HHHhcCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence 456789999997654433321 124578999999998643211110 1122234456889999999997
Q ss_pred CcCCCcchHHHHHHHHHHhC-----CCCEEE-EeecCCcChhhh
Q 025133 200 SPERSGDSLDELEKEIHEIN-----SLAHVI-RSVRCQVDLSEV 237 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~-----~~a~i~-~s~~~~~~~~~l 237 (257)
.... ...++++...+..+. ...+++ .|++++.++.++
T Consensus 131 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 131 DARP-EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred CCCH-HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 5321 123445555543321 123444 788888777544
No 104
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.21 E-value=1.5e-10 Score=94.27 Aligned_cols=110 Identities=21% Similarity=0.176 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
..+.+.||+|..........+ ...++.+++|+|+...............+.........|.++|+||+|+..
T Consensus 52 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 52 ITFHFWDVGGQEKLRPLWKSY--------TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred eEEEEEECCCcHhHHHHHHHH--------hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 457799999975433332221 235789999999987533211100000000111123468899999999865
Q ss_pred cCCCcchHHHHHHHHH--HhCC--CCEEE-EeecCCcChhhhhcCcc
Q 025133 201 PERSGDSLDELEKEIH--EINS--LAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~--~~~~--~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
... .+.+...+. .... ...++ .|++.+.|+++++..+.
T Consensus 124 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~ 166 (183)
T cd04152 124 ALS----VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLY 166 (183)
T ss_pred cCC----HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHH
Confidence 321 233333332 1111 23444 79999999998887653
No 105
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.20 E-value=6.7e-11 Score=93.60 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
.++.++||||........... ....+.+++|+|+.......... . +...+.+ -..|.++|.||+
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~-~---~~~~i~~~~~~~~~~~~iv~nK~ 116 (161)
T cd01863 49 VKLAIWDTAGQERFRTLTSSY--------YRGAQGVILVYDVTRRDTFTNLE-T---WLNELETYSTNNDIVKMLVGNKI 116 (161)
T ss_pred EEEEEEECCCchhhhhhhHHH--------hCCCCEEEEEEECCCHHHHHhHH-H---HHHHHHHhCCCCCCcEEEEEECC
Confidence 457899999964332222111 23578999999998654422110 0 1111212 134568899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..... ..+......+.. ..+++ .|++.+.|+++++...
T Consensus 117 D~~~~~~---~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 117 DKENREV---TREEGLKFARKH--NMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred ccccccc---CHHHHHHHHHHc--CCEEEEEecCCCCCHHHHHHHH
Confidence 9984432 234444544443 34555 7999999999988654
No 106
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.20 E-value=7.1e-11 Score=97.40 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
+++.++||||+.+.....+.+. .. ......|.+++|.|.. +... +.. +...+.+.+.+.++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l-~~--~~~~~~d~~l~v~~~~-~~~~-d~~-----~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYL-EE--MKFSEYDFFIIISSTR-FSSN-DVK-----LAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHH-HH--hCccCcCEEEEEeCCC-CCHH-HHH-----HHHHHHHhCCCEEEEEecccchh
Confidence 4678999999875422221111 00 1133567777776543 3221 111 23344555667899999999975
Q ss_pred cCC---------CcchHHHHHHHHHHhC-----CCCEEE-Eeec--CCcChhhhhcCccCCCC
Q 025133 201 PER---------SGDSLDELEKEIHEIN-----SLAHVI-RSVR--CQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 201 ~~~---------~~~~l~~~~~~l~~~~-----~~a~i~-~s~~--~~~~~~~l~~~~~~~~~ 246 (257)
..+ ..+.++.+++.+.... +..+++ +|+. ++-++..|.++..-.++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 322 1133555555554322 234566 5665 45677777766654443
No 107
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.20 E-value=2.7e-10 Score=90.94 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=62.1
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh-HHHHHH------hhcCEEEEe
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQI------AFADVVILN 194 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~ql------~~~~vivlN 194 (257)
.+.++|+||......+... ....++.+++++|+...... .... .+. ....+. ..|.++|+|
T Consensus 50 ~~~~~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~p~ilv~n 117 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVA--------FYRGADCCVLVYDVTNPKSF-ESLD---SWRDEFLIQASPSDPENFPFVVLGN 117 (172)
T ss_pred EEEEEeCCChHHHHhHHHH--------HhcCCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCccCCCCceEEEEEE
Confidence 3568999996433222221 12347899999999865432 1110 011 112222 356788999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+|+..+.. ...+.+....+... ..+++ .|+.++.|+++++..+.
T Consensus 118 K~Dl~~~~~--~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~i~ 163 (172)
T cd01862 118 KIDLEEKRQ--VSTKKAQQWCQSNG-NIPYFETSAKEAINVEQAFETIA 163 (172)
T ss_pred Ccccccccc--cCHHHHHHHHHHcC-CceEEEEECCCCCCHHHHHHHHH
Confidence 999985332 12345555554433 34555 89999999999887654
No 108
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.20 E-value=1.4e-10 Score=92.08 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=61.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||||........+. .....+.+++|+|.++..... ... .+...+.+. ..|.++|.||+|+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~-~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSN--------YWESPSVFILVYDVSNKASFE-NCS---RWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEEECCCHHHHHHHHHH--------HhCCCCEEEEEEECcCHHHHH-HHH---HHHHHHHHhCCCCCEEEEEECccc
Confidence 45789999996443333322 124579999999998754321 110 022222222 3577899999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+... ..... +...+ +.+++ .|+.++.++++++...
T Consensus 120 ~~~~~~~~--~~~~~-~~~~~-~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 120 ADKAEVTD--AQAQA-FAQAN-QLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred ccccCCCH--HHHHH-HHHHc-CCeEEEEeCCCCCChHHHHHHH
Confidence 77644211 11222 22222 23455 7999999999887654
No 109
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.20 E-value=5.8e-11 Score=94.23 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||||......+.... ....+.+++|+|+...... .... .+...+.+. ..|.++|.||+
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~~pii~v~nK~ 115 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQY--------MRTGEGFLLVYSITDRQSF-EEIK---KFREQILRVKDRDDVPIVLVGNKC 115 (164)
T ss_pred EEEEEEECCCcccchHHHHHH--------HhhCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCCCEEEEEECc
Confidence 346689999977655444322 2246888999998864332 1110 011111111 34678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+...... ..+......+..+ .+++ .|++++.++++++....
T Consensus 116 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 116 DLESERVV--STEEGKELARQWG--CPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred cccccceE--cHHHHHHHHHHcC--CEEEEeecCCCCCHHHHHHHHH
Confidence 99764321 1233334444433 4555 79999999999987653
No 110
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.19 E-value=2.5e-10 Score=90.34 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=62.3
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D~ 198 (257)
.+.++|+||..........+ ...+|.+++|+|+.+........ .+...+.+. ..|.+++.||+|+
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~~~~----~~l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSY--------YRGAVGALLVYDITNRESFENLK----NWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred EEEEEECCChHHHHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEEchhc
Confidence 46799999964333222211 23478999999998754432210 011122221 3578899999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+. ..+......+..+ .+++ .|+.++.++++++..+
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~l~~~i 157 (164)
T smart00175 118 EDQRQV--SREEAEAFAEEHG--LPFFETSAKTNTNVEEAFEEL 157 (164)
T ss_pred ccccCC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHH
Confidence 764331 2344555554433 3455 7899999999987765
No 111
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.19 E-value=3e-11 Score=96.80 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=82.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|++|+|||||++.|.... ....... .+.+.. ...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~----~~~~~~t----~g~~~~-------------~i~------------------ 54 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASED----ISHITPT----QGFNIK-------------TVQ------------------ 54 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCC----CcccCCC----CCcceE-------------EEE------------------
Confidence 4569999999999999999998531 1101111 111100 000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH---HHHhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQIAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~ql~~~ 188 (257)
..+.++.++||+|........... ....+.+++|+|+............ +.... .....|
T Consensus 55 ------~~~~~~~~~D~~G~~~~~~~~~~~--------~~~~~~ii~v~D~~~~~~~~~~~~~---~~~~~~~~~~~~~p 117 (173)
T cd04155 55 ------SDGFKLNVWDIGGQRAIRPYWRNY--------FENTDCLIYVIDSADKKRLEEAGAE---LVELLEEEKLAGVP 117 (173)
T ss_pred ------ECCEEEEEEECCCCHHHHHHHHHH--------hcCCCEEEEEEeCCCHHHHHHHHHH---HHHHHhChhhcCCC
Confidence 123457799999975432222211 2346789999999864321110000 01111 122357
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEE-EEeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHV-IRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i-~~s~~~~~~~~~l~~~~ 241 (257)
.++++||+|+....+ .+.+...+.... ...++ ..|++++.|++++++.+
T Consensus 118 ~ivv~nK~D~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 118 VLVFANKQDLATAAP----AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred EEEEEECCCCccCCC----HHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 788999999976543 344443332111 11123 37999999999988765
No 112
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.19 E-value=1.8e-10 Score=95.15 Aligned_cols=114 Identities=12% Similarity=0.015 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEE
Q 025133 121 LDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivl 193 (257)
..+.|+||||...... ..+.. ..........+|.+++|+|+....+. +... .+...+.+. ..|.++|.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~-~~~~~~~~~~ad~iilv~D~~~~~S~-~~~~---~~~~~i~~~~~~~~~~~piiivg 123 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEW-MDPRFRGLRNSRAFILVYDICSPDSF-HYVK---LLRQQILETRPAGNKEPPIVVVG 123 (198)
T ss_pred EEEEEEeCCCcccCCccchhHH-HHHHHhhhccCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcccCCCCCCEEEEE
Confidence 4567999999753211 00000 01112234568999999999865432 1110 011112221 24779999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
||+|+...... ..+.+..+.++. ..++++ .|++++.|+++++....
T Consensus 124 NK~Dl~~~~~~--~~~~~~~~~~~~-~~~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 124 NKRDQQRHRFA--PRHVLSVLVRKS-WKCGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred ECccccccccc--cHHHHHHHHHHh-cCCcEEEecCCCCCCHHHHHHHHH
Confidence 99999764321 122333333322 234555 79999999999887664
No 113
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.19 E-value=1.6e-10 Score=91.41 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||.......... ....++.+++|+|+.+....... . .+...+.+. ..|.+++.||+|
T Consensus 49 ~~l~l~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~~iivv~nK~D 116 (161)
T cd04113 49 VKLQIWDTAGQERFRSVTRS--------YYRGAAGALLVYDITNRTSFEAL-P---TWLSDARALASPNIVVILVGNKSD 116 (161)
T ss_pred EEEEEEECcchHHHHHhHHH--------HhcCCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhCCCCCeEEEEEEchh
Confidence 34679999996433222211 12357899999999875543211 0 022222222 335788899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..+......+..+ ..++ .|++++.++++++...
T Consensus 117 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 117 LADQREV--TFLEASRFAQENG--LLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred cchhccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHHHH
Confidence 9764332 2344455555443 4555 8999999999987654
No 114
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.19 E-value=4e-10 Score=92.85 Aligned_cols=174 Identities=22% Similarity=0.223 Sum_probs=96.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchh---
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHS--- 106 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~--- 106 (257)
.+++++|++|+||||++-+|..+ ..++++++++.|... .+...++-.... -++.. ..+....+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R-~ga~eQL~~~a~~l~vp~----------~~~~~~~~~~~ 70 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR-IGAVEQLKTYAEILGVPF----------YVARTESDPAE 70 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS-THHHHHHHHHHHHHTEEE----------EESSTTSCHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC-ccHHHHHHHHHHHhcccc----------chhhcchhhHH
Confidence 47899999999999999999763 239999999999765 443333222100 00100 00111212
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 107 -LVQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 107 -~~~~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
+...+++.. ..++|+|||||+|..... ...+.+. .+......+.+++|+++......+... . .+.+
T Consensus 71 ~~~~~l~~~~--~~~~D~vlIDT~Gr~~~d~~~~~el~---~~~~~~~~~~~~LVlsa~~~~~~~~~~------~-~~~~ 138 (196)
T PF00448_consen 71 IAREALEKFR--KKGYDLVLIDTAGRSPRDEELLEELK---KLLEALNPDEVHLVLSATMGQEDLEQA------L-AFYE 138 (196)
T ss_dssp HHHHHHHHHH--HTTSSEEEEEE-SSSSTHHHHHHHHH---HHHHHHSSSEEEEEEEGGGGGHHHHHH------H-HHHH
T ss_pred HHHHHHHHHh--hcCCCEEEEecCCcchhhHHHHHHHH---HHhhhcCCccceEEEecccChHHHHHH------H-HHhh
Confidence 223333322 457899999999977543 2222221 112223566899999999877654421 1 2222
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
.-..+-++++|.|.... ...+-..+.+.. .++-.-+.++ ++++|.
T Consensus 139 ~~~~~~lIlTKlDet~~------~G~~l~~~~~~~--~Pi~~it~Gq-~V~Dl~ 183 (196)
T PF00448_consen 139 AFGIDGLILTKLDETAR------LGALLSLAYESG--LPISYITTGQ-RVDDLE 183 (196)
T ss_dssp HSSTCEEEEESTTSSST------THHHHHHHHHHT--SEEEEEESSS-STTGEE
T ss_pred cccCceEEEEeecCCCC------cccceeHHHHhC--CCeEEEECCC-ChhcCc
Confidence 22357889999998764 355555554433 3454444443 335443
No 115
>PRK14974 cell division protein FtsY; Provisional
Probab=99.19 E-value=5e-10 Score=99.21 Aligned_cols=181 Identities=19% Similarity=0.174 Sum_probs=96.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|++|+||||++.+|... ..+.+++++..|... .+...++... ...++.+ .....|.- ...-+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R-~~a~eqL~~~a~~lgv~v---~~~~~g~d---p~~v~ 211 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR-AGAIEQLEEHAERLGVKV---IKHKYGAD---PAAVA 211 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc-HHHHHHHHHHHHHcCCce---ecccCCCC---HHHHH
Confidence 3468999999999999999999763 447789998887543 1111111111 0011111 00000000 00111
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+... ...++++|||||+|..+ ...++..+. .+......+.+++|+|+......... ...+.+.-
T Consensus 212 ~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~---~i~~~~~pd~~iLVl~a~~g~d~~~~-------a~~f~~~~ 279 (336)
T PRK14974 212 YDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELK---KIVRVTKPDLVIFVGDALAGNDAVEQ-------AREFNEAV 279 (336)
T ss_pred HHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHH---HHHHhhCCceEEEeeccccchhHHHH-------HHHHHhcC
Confidence 2222222 14568999999999664 455544331 12223446788999999875443221 12223333
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~ 239 (257)
..+.+|+||.|....- ..+-...... ..+|..-+ .|.++++|..
T Consensus 280 ~~~giIlTKlD~~~~~------G~~ls~~~~~--~~Pi~~i~-~Gq~v~Dl~~ 323 (336)
T PRK14974 280 GIDGVILTKVDADAKG------GAALSIAYVI--GKPILFLG-VGQGYDDLIP 323 (336)
T ss_pred CCCEEEEeeecCCCCc------cHHHHHHHHH--CcCEEEEe-CCCChhhccc
Confidence 4699999999987542 2222323222 34555434 3456665543
No 116
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.18 E-value=5.2e-11 Score=96.22 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
+.+.++||||......+.... ....+.+++++|.......... ... +.....+ ...|.+++.||+|
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~-~~~--~~~~~~~~~~~~~p~ilv~NK~D 117 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKY--------SIGIHGYILVYSVTSRKSFEVV-KVI--YDKILDMLGKESVPIVLVGNKSD 117 (180)
T ss_pred EEEEEEECCChHhhHHHHHHH--------HhhCCEEEEEEECCCHHHHHHH-HHH--HHHHHHhcCCCCCCEEEEEEchh
Confidence 456799999975433322211 2246778999998865432111 000 1112222 2347899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+....+. ..+......+..+ .+++ .|++.+.++.+++.....
T Consensus 118 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 118 LHTQRQV--STEEGKELAESWG--AAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred hhhcCcc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHH
Confidence 9754332 1223333333322 3455 789999999988877643
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.18 E-value=8.5e-11 Score=94.77 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=60.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~ 196 (257)
+..+.++||||.......... ....++.+++|+|++.......... .+...+.. ...|.++++||+
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~--------~~~~~d~vi~V~D~s~~~~~~~~~~---~l~~~~~~~~~~~~p~viv~NK~ 126 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNT--------YYTNTDAVILVIDSTDRERLPLTKE---ELYKMLAHEDLRKAVLLVLANKQ 126 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHH--------HhhcCCEEEEEEECCCHHHHHHHHH---HHHHHHhchhhcCCCEEEEEECC
Confidence 356889999997543322221 1235789999999986532111100 01111111 135679999999
Q ss_pred CCCCcCCCcchHHHHHHHHHH--h-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHE--I-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~--~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..... .+++...+.. . +...+++ .|++++.|++++++.+
T Consensus 127 Dl~~~~~----~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 127 DLKGAMT----PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCCCCC----HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 9875322 3344444421 1 1222444 7999999999988754
No 118
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.18 E-value=8.5e-11 Score=92.64 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=59.8
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVDL 198 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D~ 198 (257)
+-++||+|..+...+.... ....+.+++|+|....... .... .+...+.+. ..|.++|.||+|+
T Consensus 51 ~~i~Dt~G~~~~~~l~~~~--------~~~~~~~i~v~~~~~~~s~-~~~~---~~~~~i~~~~~~~~~piivv~nK~Dl 118 (162)
T cd04138 51 LDILDTAGQEEYSAMRDQY--------MRTGEGFLCVFAINSRKSF-EDIH---TYREQIKRVKDSDDVPMVLVGNKCDL 118 (162)
T ss_pred EEEEECCCCcchHHHHHHH--------HhcCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 5579999976554444321 1236788888888754321 1110 011222222 3467889999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+... .........+..+ .+++ .|++++.|+++++...
T Consensus 119 ~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 119 AARTV---SSRQGQDLAKSYG--IPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred cccee---cHHHHHHHHHHhC--CeEEEecCCCCCCHHHHHHHH
Confidence 76432 2334444444332 2454 8999999999988665
No 119
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.18 E-value=6.2e-11 Score=113.04 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=69.0
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLVS 200 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~~~ 200 (257)
.+-||||||.. .+.. ..+.....+|.+++|+|+.......... ....+..++.+. ++|+||+|+++
T Consensus 52 ~i~~IDtPGhe---~fi~-----~m~~g~~~~D~~lLVVda~eg~~~qT~e-----hl~il~~lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 52 VLGFIDVPGHE---KFLS-----NMLAGVGGIDHALLVVACDDGVMAQTRE-----HLAILQLTGNPMLTVALTKADRVD 118 (614)
T ss_pred EEEEEECCCHH---HHHH-----HHHHHhhcCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCccCC
Confidence 36799999963 2222 1223355689999999998754332211 123344455565 68999999987
Q ss_pred cCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCccC
Q 025133 201 PERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
++......+++.+.++..+ ...+++ +|+.++.|+++|++.+..
T Consensus 119 ~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 119 EARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 5443233445555555433 234555 899999999999888743
No 120
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=99.18 E-value=5.1e-12 Score=104.11 Aligned_cols=162 Identities=18% Similarity=0.219 Sum_probs=97.0
Q ss_pred EEEEecCCCcHHHHHHHHHc--cCCCCeEEEEecCCCccc-----ccc-hhhhhcCCCCceeeeeeecCCCceeec--cc
Q 025133 35 TVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGEEI-----GVE-RAMINEGEGGALVEEWVELANGCICCT--VK 104 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~--~~~~~~v~ii~~~~g~~~-----~~d-~~~~~~~~~~~~~~~~~~l~~gcicc~--~~ 104 (257)
.+|+|||||||||..+.... +..|+++++++-||+... .++ +.++.. ..++.+--...++|-.||. +.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~--edvm~~~~LGPNg~l~yc~E~l~ 82 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITV--EDVMEELGLGPNGALKYCMEYLE 82 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccH--HHHHHHhCCCCchhHHHHHHHHH
Confidence 57899999999999998855 244889999999998722 111 111111 1111122344567777886 33
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCc----HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 105 HSLVQALEQLVQRKERLDHILLETTGLANP----APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~----~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
..+ .++..-+. .....|+++|.||..+. ......+. ...+...++ +++.++|+--+.++....+.......
T Consensus 83 ~~i-dwl~~~l~-~~~~~Y~lFDcPGQVELft~h~~l~~I~~--~Lek~~~rl-~~V~LiDs~ycs~p~~~iS~lL~sl~ 157 (290)
T KOG1533|consen 83 ANI-DWLLEKLK-PLTDHYVLFDCPGQVELFTHHDSLNKIFR--KLEKLDYRL-VAVNLIDSHYCSDPSKFISSLLVSLA 157 (290)
T ss_pred hhh-HHHHHHhh-hccCcEEEEeCCCcEEEEeccchHHHHHH--HHHHcCceE-EEEEeeeceeeCChHHHHHHHHHHHH
Confidence 444 33333332 24668999999995432 12222111 111233444 78899998877666555433222223
Q ss_pred HHHHHhhcCEEEEeCCCCCCcCC
Q 025133 181 AIHQIAFADVVILNKVDLVSPER 203 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~~~~ 203 (257)
..-+++.|++-|++|+|++....
T Consensus 158 tMl~melphVNvlSK~Dl~~~yg 180 (290)
T KOG1533|consen 158 TMLHMELPHVNVLSKADLLKKYG 180 (290)
T ss_pred HHHhhcccchhhhhHhHHHHhhc
Confidence 34667889999999999986543
No 121
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.17 E-value=3.4e-10 Score=90.60 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=60.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEeC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILNK 195 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlNK 195 (257)
.+.+.||+|......... ......+.+++|+|+.......+ +...+.++ ..|.++|.||
T Consensus 54 ~~~i~Dt~G~~~~~~~~~--------~~~~~~d~il~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~pvivv~nK 118 (168)
T cd01866 54 KLQIWDTAGQESFRSITR--------SYYRGAAGALLVYDITRRETFNH-------LTSWLEDARQHSNSNMTIMLIGNK 118 (168)
T ss_pred EEEEEECCCcHHHHHHHH--------HHhccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCCcEEEEEEC
Confidence 477999999543222221 11235788999999985433211 12222222 2467889999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+|+.+.... ..+..+...+.. ...++ .|+..+.++++++...
T Consensus 119 ~Dl~~~~~~--~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 119 CDLESRREV--SYEEGEAFAKEH--GLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred cccccccCC--CHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 999854332 234444444443 34555 7899999999887543
No 122
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.17 E-value=1.2e-10 Score=92.54 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
..+.+.||||......+.... ...++.+++|+|......... ... +...+.+ -..|.++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~~-~~~---~~~~i~~~~~~~~~piilv~nK~ 116 (164)
T cd04175 49 CMLEILDTAGTEQFTAMRDLY--------MKNGQGFVLVYSITAQSTFND-LQD---LREQILRVKDTEDVPMILVGNKC 116 (164)
T ss_pred EEEEEEECCCcccchhHHHHH--------HhhCCEEEEEEECCCHHHHHH-HHH---HHHHHHHhcCCCCCCEEEEEECC
Confidence 345689999976554444322 123578899999865433211 100 1111111 135779999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+...... .........++.+ .+++ .|++.+.++++++..+.
T Consensus 117 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 117 DLEDERVV--GKEQGQNLARQWG--CAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred cchhccEE--cHHHHHHHHHHhC--CEEEEeeCCCCCCHHHHHHHHH
Confidence 99765332 1233333333333 3455 89999999999887653
No 123
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.17 E-value=1.4e-10 Score=92.42 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=63.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||||..+....... .....+.+++|+|+........... .+...+.+. ..|.++|.||+|+
T Consensus 48 ~~l~~~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ivv~nK~Dl 116 (171)
T cd00157 48 VNLGLWDTAGQEEYDRLRPL--------SYPNTDVFLICFSVDSPSSFENVKT---KWIPEIRHYCPNVPIILVGTKIDL 116 (171)
T ss_pred EEEEEEeCCCcccccccchh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEEccHHh
Confidence 45779999997654222111 1235789999999986433222110 011122222 3678999999999
Q ss_pred CCcCCCc---------chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSG---------DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~---------~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....... -..+.........+.. .++ .|+..+.++++++..+
T Consensus 117 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 117 RDDENTLKKLEKGKEPITPEEGEKLAKEIGAI-GYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred hhchhhhhhcccCCCccCHHHHHHHHHHhCCe-EEEEeecCCCCCHHHHHHHH
Confidence 8765321 0123344444444432 444 7999999999988654
No 124
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.17 E-value=4.8e-10 Score=101.94 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=87.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..++.++|++|+||||++.+|... ..|++++++..|+.. .+.-..+-... ..++.+ ... ....+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R-~aA~eQLk~~a~~~~vp~---~~~-------~~~~dp 167 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR-AGAFDQLKQNATKARIPF---YGS-------YTESDP 167 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc-hhHHHHHHHHhhccCCeE---Eee-------cCCCCH
Confidence 3458999999999999999999753 458899999998754 21111111000 011111 000 011121
Q ss_pred H----HHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 108 V----QALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 108 ~----~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
. ..+..+- ..++|+|||||+|-.+. ..+.+.+. .+......+.+++|+|+..+....+ ....+
T Consensus 168 ~~i~~~~l~~~~--~~~~DvViIDTaGr~~~d~~lm~El~---~i~~~~~p~e~lLVlda~~Gq~a~~-------~a~~F 235 (429)
T TIGR01425 168 VKIASEGVEKFK--KENFDIIIVDTSGRHKQEDSLFEEML---QVAEAIQPDNIIFVMDGSIGQAAEA-------QAKAF 235 (429)
T ss_pred HHHHHHHHHHHH--hCCCCEEEEECCCCCcchHHHHHHHH---HHhhhcCCcEEEEEeccccChhHHH-------HHHHH
Confidence 1 2233221 35799999999996554 33443332 1223445678999999987655432 22334
Q ss_pred HHHhhcCEEEEeCCCCCCc
Q 025133 183 HQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~ 201 (257)
.+.-..+-+|+||.|....
T Consensus 236 ~~~~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 236 KDSVDVGSVIITKLDGHAK 254 (429)
T ss_pred HhccCCcEEEEECccCCCC
Confidence 4434578999999998654
No 125
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.16 E-value=3e-10 Score=89.92 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+.++||||.......... .....+.+++|+|+.+........ .+...+.+.. .+.+++.||+|
T Consensus 50 ~~~~i~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~iivv~nK~D 117 (163)
T cd01860 50 VKFEIWDTAGQERYRSLAPM--------YYRGAAAAIVVYDITSEESFEKAK----SWVKELQRNASPNIIIALVGNKAD 117 (163)
T ss_pred EEEEEEeCCchHHHHHHHHH--------HhccCCEEEEEEECcCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECcc
Confidence 34678999995322222111 123468999999998654321110 0122222322 34677889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+... ...+......+..+ ..++ .|++++.++.+++...
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 118 LESKRQ--VSTEEAQEYADENG--LLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred ccccCc--CCHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHHHH
Confidence 875332 12445555555544 4455 7899999999988764
No 126
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.16 E-value=9.4e-11 Score=92.76 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.|.||||......+.... ....+.+++|+|....... +... .+...+.+. ..|.++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~-~~~~---~~~~~i~~~~~~~~~piilv~nK~ 116 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLY--------IKNGQGFVLVYSITSQSSF-NDLQ---DLREQILRVKDTENVPMVLVGNKC 116 (163)
T ss_pred EEEEEEECCCccccchHHHHH--------hhcCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCCCEEEEEECc
Confidence 345689999976554443221 2246889999998764332 1110 011122221 34678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+.... ..+......+..+ .+++ .|++.+.++.+++...
T Consensus 117 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 117 DLEDERVV--SREEGQALARQWG--CPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred ccccccee--cHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHH
Confidence 98764332 1223333333333 4555 7999999999988765
No 127
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.16 E-value=2.2e-10 Score=91.51 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=61.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVD 197 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D 197 (257)
+.++.++||||.......... .....+.+++|+|+.+......... .+...+.+. ..|.++|.||+|
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~--------~~~~ad~~ilv~d~~~~~s~~~~~~---~~~~~i~~~~~~~pviiv~nK~D 114 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLAA--------EIRKANVICLVYSVDRPSTLERIRT---KWLPLIRRLGVKVPIILVGNKSD 114 (166)
T ss_pred eEEEEEEeCCCchhhhHHHhh--------hcccCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEchh
Confidence 356789999997654332211 1245788999999876443221000 011122222 357788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+........+.+....++.+....++ .|++.+.++++++...
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 115 LRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred cccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 9875431100112222222222222455 7899999999988754
No 128
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.15 E-value=5e-10 Score=93.51 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=62.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh------hcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA------FADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~------~~~vivlN 194 (257)
..+.|.||+|...+..+...+ ...++.+++|+|....... .... .+...+.+.. .+.++|.|
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~--------~~~ad~iilV~D~t~~~s~-~~~~---~w~~~l~~~~~~~~~~~piilVgN 117 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKY--------IYGAHAVFLVYDVTNSQSF-ENLE---DWYSMVRKVLKSSETQPLVVLVGN 117 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHH--------hhcCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhccccCCCceEEEEEE
Confidence 456799999965544444322 2357999999999865432 1110 0122222221 23567899
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
|+|+....+. ..+......+. +....+..|++++.++++++..+.
T Consensus 118 K~DL~~~~~v--~~~~~~~~~~~-~~~~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 118 KTDLEHNRTV--KDDKHARFAQA-NGMESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred Cccccccccc--CHHHHHHHHHH-cCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999754332 22333343333 333334489999999999887663
No 129
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.15 E-value=2.5e-10 Score=90.78 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=61.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||........... ....+.+++|+|+...... .... .+...+.+. ..|.++|.||+|
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~-~~~~---~~~~~~~~~~~~~~pi~vv~nK~D 119 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDITKKQTF-ENVE---RWLKELRDHADSNIVIMLVGNKSD 119 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHH--------HCCCCEEEEEEECcCHHHH-HHHH---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 346799999975443333211 1245789999999854432 2111 112222222 246678899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..++.....+. + ...++ .|++++.++++++..+
T Consensus 120 l~~~~~~--~~~~~~~~~~~-~-~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 120 LRHLRAV--PTEEAKAFAEK-N-GLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred ccccccC--CHHHHHHHHHH-c-CCEEEEEECCCCCCHHHHHHHH
Confidence 8765332 23344444443 2 34455 7999999999988765
No 130
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.15 E-value=9.7e-11 Score=92.12 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++|+||........... ....+.+++|+|......... ... +...+.+. ..|.++++||+
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~p~ivv~nK~ 114 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLY--------IRQGDGFILVYSITDRESFEE-IKG---YREQILRVKDDEDIPIVLVGNKC 114 (160)
T ss_pred EEEEEEECCChHHHHHHHHHH--------HhcCCEEEEEEECCCHHHHHH-HHH---HHHHHHHhcCCCCCcEEEEEECC
Confidence 346799999966543333221 234688999999876443211 100 11122221 35678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+....+ ...+......++.. .+++ .|++.+.++++++..+
T Consensus 115 D~~~~~~--~~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~l 156 (160)
T cd00876 115 DLENERQ--VSKEEGKALAKEWG--CPFIETSAKDNINIDEVFKLL 156 (160)
T ss_pred cccccce--ecHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHH
Confidence 9987433 22345555555544 3455 7899999999988765
No 131
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.14 E-value=4e-10 Score=89.82 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=61.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|.......... .....+.+++|+|....... .... .+...+.+. ..+.++|.||+|
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~--------~~~~~~~~l~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTA--------YYRGAMGFILMYDITNEESF-NAVQ---DWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEEECCChHHHHHHHHH--------HccCCcEEEEEEECCCHHHH-HHHH---HHHHHHHHhCCCCCCEEEEEECcc
Confidence 34679999996543332221 12457899999998764322 2111 122223332 235788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+.... ..+...+..+.. .. +++ .|++++.|+++++....
T Consensus 118 l~~~~~~--~~~~~~~~~~~~-~~-~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 118 MEDERVV--SSERGRQLADQL-GF-EFFEASAKENINVKQVFERLV 159 (165)
T ss_pred cCccccc--CHHHHHHHHHHc-CC-EEEEEECCCCCCHHHHHHHHH
Confidence 9765432 123333333332 22 345 89999999999887653
No 132
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.14 E-value=4.4e-10 Score=106.60 Aligned_cols=155 Identities=20% Similarity=0.222 Sum_probs=90.6
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+.|++++.|..|+|||||+++|... ++ ...+.+. ++... +. ......
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~----~v--~~~e~~G---IT~~i------g~---~~v~~~------------- 132 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKT----KV--AQGEAGG---ITQHI------GA---YHVENE------------- 132 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC----Cc--ccccCCc---eeecc------eE---EEEEEC-------------
Confidence 347799999999999999999999742 11 1111111 11000 00 001110
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
....+.|+||||......+.. ......|.+++|+|+.......... ........+.|
T Consensus 133 ----------~~~~i~~iDTPGhe~F~~~r~--------rga~~aDiaILVVda~dgv~~qT~e-----~i~~~~~~~vP 189 (587)
T TIGR00487 133 ----------DGKMITFLDTPGHEAFTSMRA--------RGAKVTDIVVLVVAADDGVMPQTIE-----AISHAKAANVP 189 (587)
T ss_pred ----------CCcEEEEEECCCCcchhhHHH--------hhhccCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCCC
Confidence 112578999999754433321 1234678999999998643222110 11222334568
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC-------CCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN-------SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~-------~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++++||+|+.+.. .+.+...++... ...+++ .|++++.|+++++..+.
T Consensus 190 iIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 190 IIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred EEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhh
Confidence 89999999986532 234444443321 123444 89999999999988773
No 133
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.14 E-value=1.5e-10 Score=92.99 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~~~vivlNK~D 197 (257)
..+.+.||+|........... ...++.+++|+|+...... ..... .+...+.+ . ..|.++|.||+|
T Consensus 53 ~~~~l~Dt~G~~~~~~~~~~~--------~~~a~~ii~v~D~t~~~s~-~~~~~--~~~~~~~~~~~~~~piilv~NK~D 121 (168)
T cd04149 53 VKFNVWDVGGQDKIRPLWRHY--------YTGTQGLIFVVDSADRDRI-DEARQ--ELHRIINDREMRDALLLVFANKQD 121 (168)
T ss_pred EEEEEEECCCCHHHHHHHHHH--------hccCCEEEEEEeCCchhhH-HHHHH--HHHHHhcCHhhcCCcEEEEEECcC
Confidence 457899999986544433211 2357899999999874321 11100 01112211 1 246788999999
Q ss_pred CCCcCCCcchHHHHHHHHHH--hCC-CCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHE--INS-LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~--~~~-~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..... .+++...++. .+. ...++ +|++++.|+++++..+
T Consensus 122 l~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 122 LPDAMK----PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CccCCC----HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 865322 3455554421 121 12344 7999999999888654
No 134
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.14 E-value=8.6e-11 Score=111.59 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=66.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~~ 199 (257)
..+.|+||||.. .+... .+.....+|.+++|+|+.......... ....+..++.+ .++|+||+|+.
T Consensus 50 ~~v~~iDtPGhe---~f~~~-----~~~g~~~aD~aILVVDa~~G~~~qT~e-----hl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 50 YRLGFIDVPGHE---KFISN-----AIAGGGGIDAALLVVDADEGVMTQTGE-----HLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEEEEECCCHH---HHHHH-----HHhhhccCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCCCC
Confidence 457799999953 22211 123455689999999998743221111 12234455667 78899999998
Q ss_pred CcCCCcchHHHHHHHHHHhC--CCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEIN--SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~--~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+......+++...++... +..+++ +|+.++.|++++...+
T Consensus 117 ~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L 161 (581)
T TIGR00475 117 NEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKEL 161 (581)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHH
Confidence 76532122334555555432 245666 8999999998877654
No 135
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.13 E-value=4.4e-10 Score=89.31 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=59.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|........... ....+.+++|+|+.......+.. .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 49 ILVDFWDTAGQERFQTMHASY--------YHKAHACILVFDVTRKITYKNLS----KWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred EEEEEEeCCCchhhhhhhHHH--------hCCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCcEEEEEECccC
Confidence 456789999975443333211 23568999999998654322110 022222332 4577999999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.... ........+.. . .+++ .|++++.|+++++...
T Consensus 117 ~~~~-----~~~~~~~~~~~-~-~~~~~~Sa~~~~gv~~l~~~l 153 (161)
T cd04124 117 DPSV-----TQKKFNFAEKH-N-LPLYYVSAADGTNVVKLFQDA 153 (161)
T ss_pred chhH-----HHHHHHHHHHc-C-CeEEEEeCCCCCCHHHHHHHH
Confidence 5321 12222222222 2 3444 8999999999988765
No 136
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.13 E-value=3.6e-10 Score=97.98 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=36.5
Q ss_pred eeeeeEEEEEeccc-hHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh
Q 025133 151 VRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (257)
Q Consensus 151 ~~~~~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~ 218 (257)
.++++++|++++.. .....+.. +...+.+ ..+.++|+||+|+++.++.......+.+.++..
T Consensus 113 ~rvh~~ly~i~~~~~~l~~~D~~-----~lk~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~ 175 (276)
T cd01850 113 TRVHACLYFIEPTGHGLKPLDIE-----FMKRLSK-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEH 175 (276)
T ss_pred CceEEEEEEEeCCCCCCCHHHHH-----HHHHHhc-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHc
Confidence 46899999999874 22222210 1112222 457788999999988655433344455555543
No 137
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.13 E-value=3.1e-10 Score=90.17 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=59.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|........... ...++.+++|+|+.+.... +.... .+.....+- ..|.+++.||+|
T Consensus 44 ~~~~l~D~~G~~~~~~~~~~~--------~~~ad~~i~v~D~~~~~s~-~~~~~--~~~~~~~~~~~~~~piilv~NK~D 112 (159)
T cd04150 44 ISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRERI-GEARE--ELQRMLNEDELRDAVLLVFANKQD 112 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHH--------hcCCCEEEEEEeCCCHHHH-HHHHH--HHHHHHhcHHhcCCCEEEEEECCC
Confidence 457899999986543333211 2357999999999864321 11100 011111111 246788999999
Q ss_pred CCCcCCCcchHHHHHHHHH--Hh-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIH--EI-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~--~~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..... .+++...+. .. +....++ .|++++.|+++++..+
T Consensus 113 l~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l 156 (159)
T cd04150 113 LPNAMS----AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred CCCCCC----HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence 865422 233333331 11 1222344 6999999999988754
No 138
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.13 E-value=1.9e-09 Score=93.25 Aligned_cols=185 Identities=15% Similarity=0.161 Sum_probs=96.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchh
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
.+..+++++|++|+||||++.+|... ..+++++++..|... .+...++... ...+.. ......+. .....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r-~~a~~ql~~~~~~~~i~---~~~~~~~~---dp~~~ 142 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR-AAAIEQLEEWAKRLGVD---VIKQKEGA---DPAAV 142 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC-HHHHHHHHHHHHhCCeE---EEeCCCCC---CHHHH
Confidence 34568899999999999999999753 457899999998643 2111111110 001111 01111110 01111
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcc-cccccc--cceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~--~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
....+.... ..++|+|||||||.... ...++.+. +..... .....+.+++|+|+......... + ..+
T Consensus 143 ~~~~l~~~~--~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~------~-~~f 213 (272)
T TIGR00064 143 AFDAIQKAK--ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQ------A-KVF 213 (272)
T ss_pred HHHHHHHHH--HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHH------H-HHH
Confidence 122233222 46799999999996543 23222211 000000 01126788999999866544332 1 122
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhc
Q 025133 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~ 239 (257)
.+.-..+-+|+||.|....- ..+....... ..++...+.++ ++++|..
T Consensus 214 ~~~~~~~g~IlTKlDe~~~~------G~~l~~~~~~--~~Pi~~~~~Gq-~~~dl~~ 261 (272)
T TIGR00064 214 NEAVGLTGIILTKLDGTAKG------GIILSIAYEL--KLPIKFIGVGE-KIDDLAP 261 (272)
T ss_pred HhhCCCCEEEEEccCCCCCc------cHHHHHHHHH--CcCEEEEeCCC-ChHhCcc
Confidence 22224689999999986553 2333333332 24555444443 4665543
No 139
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.13 E-value=7.5e-10 Score=91.29 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=61.1
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV 199 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~ 199 (257)
.+.|+||||........... ....+.+++|+|+.+.... .... .+...+.+. ..+.++|.||+|+.
T Consensus 56 ~l~l~D~~G~~~~~~~~~~~--------~~~a~~iilv~D~~~~~s~-~~~~---~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 56 KLQIWDTAGQERFRTITSTY--------YRGTHGVIVVYDVTNGESF-VNVK---RWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEEeCCCchhHHHHHHHH--------hCCCcEEEEEEECCCHHHH-HHHH---HHHHHHHHhCCCCCEEEEEECcccc
Confidence 46799999965443333211 1235789999999865432 1110 011112121 24568899999997
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..... ..+......+..+ .+++ +|+.++.++++++..+
T Consensus 124 ~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 124 ERKVV--ETEDAYKFAGQMG--ISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred ccccc--CHHHHHHHHHHcC--CEEEEEECCCCcCHHHHHHHH
Confidence 65432 2244444444433 4566 7999999999988765
No 140
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.13 E-value=3.6e-10 Score=90.08 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=60.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlN 194 (257)
..+.++||+|......+.... ....+.+++|+|..+...... .. .+...+.+. ..|.++|.|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~-~~---~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 49 CTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVYSVTSKQSLEE-LK---PIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred EEEEEEECCCCCcchHHHHHH--------hhcCCEEEEEEECCCHHHHHH-HH---HHHHHHHHHhcCCCCCCCEEEEEE
Confidence 446799999976544333211 224678899999876543211 10 022223332 246789999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+|+....+.. .+......+. ....++ .|++++.++++++..+
T Consensus 117 K~Dl~~~~~v~--~~~~~~~~~~--~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 117 KCDESHKREVS--SNEGAACATE--WNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred CccccccCeec--HHHHHHHHHH--hCCcEEEeecCCCCCHHHHHHHH
Confidence 99997643321 1222222222 234555 7999999999988764
No 141
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.13 E-value=1.4e-10 Score=94.61 Aligned_cols=106 Identities=16% Similarity=0.131 Sum_probs=60.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~D 197 (257)
..+.++||||.......... .....+.+++|+|+...... ..... .+..... ....|.+++.||+|
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~--------~~~~ad~iilV~D~~~~~s~-~~~~~--~~~~i~~~~~~~~~pvivv~NK~D 131 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKD--------YFPEVDGIVFLVDAADPERF-QESKE--ELDSLLSDEELANVPFLILGNKID 131 (190)
T ss_pred EEEEEEECCCCHHHHHHHHH--------HhccCCEEEEEEECCcHHHH-HHHHH--HHHHHHcCccccCCCEEEEEeCCC
Confidence 45679999996433222111 12345889999999864221 11000 0111111 12357888999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhC--------------CCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEIN--------------SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~--------------~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..... .+++...++... ....++ .|++++.|+++++..+
T Consensus 132 l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l 186 (190)
T cd00879 132 LPGAVS----EEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWL 186 (190)
T ss_pred CCCCcC----HHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHH
Confidence 875322 455666554211 112344 7999999999888654
No 142
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.12 E-value=5.1e-10 Score=108.83 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=91.7
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+.|+++|.|..|+|||||+++|... ++ ...+.+. ++.. .|...+.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~----~v--~~~e~~G---IT~~------------------iga~~v~------ 333 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT----NV--AAGEAGG---ITQH------------------IGAYQVE------ 333 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC----Cc--cccccCc---eeee------------------ccEEEEE------
Confidence 458899999999999999999999742 11 1111111 1100 0000000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+..+.|+||||......+.. ......|.+++|+|+.......... ..........|
T Consensus 334 ---------~~~~~ItfiDTPGhe~F~~m~~--------rga~~aDiaILVVdAddGv~~qT~e-----~i~~a~~~~vP 391 (787)
T PRK05306 334 ---------TNGGKITFLDTPGHEAFTAMRA--------RGAQVTDIVVLVVAADDGVMPQTIE-----AINHAKAAGVP 391 (787)
T ss_pred ---------ECCEEEEEEECCCCccchhHHH--------hhhhhCCEEEEEEECCCCCCHhHHH-----HHHHHHhcCCc
Confidence 1234578999999765433322 1234578999999998643222111 11222334568
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHH-------hCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHE-------INSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~-------~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.++++||+|+.... ...+...+.. +....+++ +|++++.|+++|++.+..
T Consensus 392 iIVviNKiDl~~a~-----~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 392 IIVAINKIDKPGAN-----PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEEEEECccccccC-----HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 89999999996542 2333333322 12234455 899999999999988753
No 143
>CHL00071 tufA elongation factor Tu
Probab=99.12 E-value=3.1e-10 Score=103.76 Aligned_cols=101 Identities=21% Similarity=0.137 Sum_probs=60.7
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D 197 (257)
.+.++.||||||.. .+... .+.....+|.+++|+|+.......... ........+.+ .++++||+|
T Consensus 73 ~~~~~~~iDtPGh~---~~~~~-----~~~~~~~~D~~ilVvda~~g~~~qt~~-----~~~~~~~~g~~~iIvvvNK~D 139 (409)
T CHL00071 73 ENRHYAHVDCPGHA---DYVKN-----MITGAAQMDGAILVVSAADGPMPQTKE-----HILLAKQVGVPNIVVFLNKED 139 (409)
T ss_pred CCeEEEEEECCChH---HHHHH-----HHHHHHhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEEEccC
Confidence 35678999999943 22221 123445789999999998765433221 23344555667 457899999
Q ss_pred CCCcCCCcch-HHHHHHHHHHhCC---CCEEE-EeecCCc
Q 025133 198 LVSPERSGDS-LDELEKEIHEINS---LAHVI-RSVRCQV 232 (257)
Q Consensus 198 ~~~~~~~~~~-l~~~~~~l~~~~~---~a~i~-~s~~~~~ 232 (257)
+++.++..+. .+++...++...- ..+++ .|+..+.
T Consensus 140 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 140 QVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence 9875443222 2466666766432 24454 6776654
No 144
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.12 E-value=2.7e-09 Score=88.07 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-------HhhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------l~~~~vivl 193 (257)
..+.+.||+|......+.... ...++.+++|+|......... .. .+...+.+ -..|.++|.
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~--------~~~a~~~ilv~D~t~~~s~~~-~~---~~~~~i~~~~~~~~~~~~piilv~ 117 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVY--------YRGAVGAIIVFDVTRPSTFEA-VL---KWKADLDSKVTLPNGEPIPCLLLA 117 (201)
T ss_pred EEEEEEECCCchhhhhhHHHH--------hCCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhhcccCCCCCcEEEEE
Confidence 346799999975443333211 235689999999886433211 10 01111111 134678999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
||+|+.+... ...+++.++.+..+ ...++ .|++++.++++++..+.
T Consensus 118 NK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 118 NKCDLKKRLA--KDGEQMDQFCKENG-FIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred ECCCcccccc--cCHHHHHHHHHHcC-CceEEEEeCCCCCCHHHHHHHHH
Confidence 9999974322 12455556555543 23455 79999999998877653
No 145
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.12 E-value=1.1e-09 Score=88.26 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=62.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.|+||||........... ...++.+++|+|+.+.....+. . .+...+.+. ..|.++|.||+
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~piiiv~nK~ 130 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAF--------FRDAMGFLLIFDLTNEQSFLNV-R---NWMSQLQTHAYCENPDIVLCGNKA 130 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHH--------hCCCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCcEEEEEeCc
Confidence 457799999965433332211 2357899999999864432221 0 012222221 24578889999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+..+. ..+....+.+..+ .+++ .|++.+.++++++....
T Consensus 131 Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~~~~v~~l~~~l~ 173 (180)
T cd04127 131 DLEDQRQV--SEEQAKALADKYG--IPYFETSAATGTNVEKAVERLL 173 (180)
T ss_pred cchhcCcc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 99865432 1234444444433 3455 89999999999887653
No 146
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.12 E-value=1.6e-10 Score=106.10 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=60.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc--hHHHHhhhccCCChhHHHHHHhh-cCEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIHQIAF-ADVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK 195 (257)
.+..+.|+||||..+.... .......+|.+++|+|+.. ....... ........++. +.++++||
T Consensus 82 ~~~~i~liDtpG~~~~~~~--------~~~~~~~aD~~ilVvDa~~~~~~~~~~~-----~~~~~~~~~~~~~iivviNK 148 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKN--------MITGASQADAAVLVVAADDAGGVMPQTR-----EHVFLARTLGINQLIVAINK 148 (425)
T ss_pred CCeEEEEEECCCcccchhh--------HhhchhcCCEEEEEEEcccCCCCCcchH-----HHHHHHHHcCCCeEEEEEEc
Confidence 3567899999995432211 1122456899999999986 2211110 01122233343 35779999
Q ss_pred CCCCCcCC--CcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhhhh
Q 025133 196 VDLVSPER--SGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 196 ~D~~~~~~--~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~l~ 238 (257)
+|+.+..+ .....+++...++...- ..+++ +|++++.|++++.
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 99986321 11223455555554431 23455 8999999987643
No 147
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.12 E-value=7.9e-10 Score=88.00 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=61.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D~ 198 (257)
.+.++||||........... ....+.+++|+|+.+.... .... .+...+.+. ..+.++|.||+|+
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~-~~l~---~~~~~~~~~~~~~~~~iiv~nK~Dl 119 (166)
T cd01869 52 KLQIWDTAGQERFRTITSSY--------YRGAHGIIIVYDVTDQESF-NNVK---QWLQEIDRYASENVNKLLVGNKCDL 119 (166)
T ss_pred EEEEEECCCcHhHHHHHHHH--------hCcCCEEEEEEECcCHHHH-HhHH---HHHHHHHHhCCCCCcEEEEEEChhc
Confidence 46699999965433333221 2357899999999875432 1111 011222222 2467889999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...... ..+......+.. ..+++ .|++++.++++++..+
T Consensus 120 ~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 120 TDKRVV--DYSEAQEFADEL--GIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred ccccCC--CHHHHHHHHHHc--CCeEEEEECCCCcCHHHHHHHH
Confidence 765432 223444444432 23555 8999999999988655
No 148
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.12 E-value=3.3e-09 Score=93.57 Aligned_cols=184 Identities=15% Similarity=0.171 Sum_probs=95.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+..+++++|++|+||||++.+|... ..+++++++..|.......+.........++.+. ....+. .......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~---~~~~~~---dpa~~v~ 186 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVI---AQKEGA---DPASVAF 186 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEE---EeCCCC---CHHHHHH
Confidence 3468999999999999999999764 4578999999886431111110000000111110 000000 0001112
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcc-ccccccc--ceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 109 QALEQLVQRKERLDHILLETTGLAN-PAPLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~-~~~~~~~--~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
..+... ...++|+|||||||..+ ....++.+. +...... ....+.+++|+|+......+.. ...+.+
T Consensus 187 ~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-------a~~f~~ 257 (318)
T PRK10416 187 DAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-------AKAFHE 257 (318)
T ss_pred HHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH-------HHHHHh
Confidence 222222 24679999999999654 333332221 0111100 1234578999999976554332 112222
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
.-..+.+|+||.|.... ...+...+... ..+|...+.| .++++|.
T Consensus 258 ~~~~~giIlTKlD~t~~------~G~~l~~~~~~--~~Pi~~v~~G-q~~~Dl~ 302 (318)
T PRK10416 258 AVGLTGIILTKLDGTAK------GGVVFAIADEL--GIPIKFIGVG-EGIDDLQ 302 (318)
T ss_pred hCCCCEEEEECCCCCCC------ccHHHHHHHHH--CCCEEEEeCC-CChhhCc
Confidence 22467899999996543 23333434433 3456544444 4566554
No 149
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.11 E-value=5.4e-10 Score=88.39 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--HhhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l~~~~vivlNK~D~ 198 (257)
..+.|.||||........... ....+.+++|+|+...... .... .+...+.+ -..|.++|.||+|+
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~v~v~d~~~~~s~-~~l~---~~~~~~~~~~~~~p~iiv~nK~Dl 118 (162)
T cd04106 51 VRLMLWDTAGQEEFDAITKAY--------YRGAQACILVFSTTDRESF-EAIE---SWKEKVEAECGDIPMVLVQTKIDL 118 (162)
T ss_pred EEEEEeeCCchHHHHHhHHHH--------hcCCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhCCCCCEEEEEEChhc
Confidence 457899999964433332211 2356888999998764432 1110 01111111 13577999999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.++.+. ..++.....+..+ .+++ .|++.+.++++++..+
T Consensus 119 ~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 119 LDQAVI--TNEEAEALAKRLQ--LPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred ccccCC--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHH
Confidence 875442 1233444444332 3555 7889999999987654
No 150
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.11 E-value=4.6e-10 Score=91.89 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||.......... ....++.+++|+|+...... +.... +...+.+. ..|.++|.||+|
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~--------~~~~ad~~i~v~D~~~~~s~-~~~~~---~~~~i~~~~~~~~piiiv~NK~D 117 (191)
T cd04112 50 VKLQIWDTAGQERFRSVTHA--------YYRDAHALLLLYDITNKASF-DNIRA---WLTEIKEYAQEDVVIMLLGNKAD 117 (191)
T ss_pred EEEEEEeCCCcHHHHHhhHH--------HccCCCEEEEEEECCCHHHH-HHHHH---HHHHHHHhCCCCCcEEEEEEccc
Confidence 34779999995432222211 12346899999999875332 11110 12222222 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+....+. ..++.....+..+ .+++ .|++.+.++++++..+.
T Consensus 118 l~~~~~~--~~~~~~~l~~~~~--~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 118 MSGERVV--KREDGERLAKEYG--VPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred chhcccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 9754332 1233334333322 3555 79999999999887764
No 151
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.11 E-value=2.3e-09 Score=95.99 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=100.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCcee--eccchhH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC--CTVKHSL 107 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic--c~~~~~~ 107 (257)
..+++++|+.|+||||++.+|... ..+++++++..|+.. ++.-.++.... +. .|+-+ +....++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R-iaAvEQLk~ya----------e~-lgipv~v~~d~~~L 308 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYV----------KT-IGFEVIAVRDEAAM 308 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHh----------hh-cCCcEEecCCHHHH
Confidence 358999999999999999999753 457899999999764 32222222110 00 11111 2234556
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+..+.. ..++|+|||||+|-.. ....++.+. ..+. ....+.+++|+|+......+.. +...+.. -
T Consensus 309 ~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~--~~lk-~~~PdevlLVLsATtk~~d~~~------i~~~F~~-~ 377 (436)
T PRK11889 309 TRALTYFKE-EARVDYILIDTAGKNYRASETVEEMI--ETMG-QVEPDYICLTLSASMKSKDMIE------IITNFKD-I 377 (436)
T ss_pred HHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHH--HHHh-hcCCCeEEEEECCccChHHHHH------HHHHhcC-C
Confidence 666655432 2368999999999544 333333221 1121 2234567888998765544322 1222222 2
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
..+-+|++|.|.... ...+....... ..+|..-+.|+.=.++|.
T Consensus 378 ~idglI~TKLDET~k------~G~iLni~~~~--~lPIsyit~GQ~VPeDI~ 421 (436)
T PRK11889 378 HIDGIVFTKFDETAS------SGELLKIPAVS--SAPIVLMTDGQDVKKNIH 421 (436)
T ss_pred CCCEEEEEcccCCCC------ccHHHHHHHHH--CcCEEEEeCCCCCCcchh
Confidence 458999999998764 34444444433 235555556554444443
No 152
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.10 E-value=4.9e-10 Score=106.18 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=70.7
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCccc-ccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI-GVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.+.|++++.|.+|+|||||+++|... .+...++|... .+....+. .... .++|........
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~------~v~~~e~ggiTq~iG~~~v~----------~~~~--~~~~~~~~~~~~ 63 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGS------AVAKREAGGITQHIGATEIP----------MDVI--EGICGDLLKKFK 63 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc------ccccccCCceecccCeeEee----------eccc--cccccccccccc
Confidence 57899999999999999999999842 22333333200 00000000 0000 000000000000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
+ +...+.+.|+||||......+.. ......|.+++|+|+.......... ....+.+...|
T Consensus 64 ------v-~~~~~~l~~iDTpG~e~f~~l~~--------~~~~~aD~~IlVvD~~~g~~~qt~e-----~i~~l~~~~vp 123 (590)
T TIGR00491 64 ------I-RLKIPGLLFIDTPGHEAFTNLRK--------RGGALADLAILIVDINEGFKPQTQE-----ALNILRMYKTP 123 (590)
T ss_pred ------c-ccccCcEEEEECCCcHhHHHHHH--------HHHhhCCEEEEEEECCcCCCHhHHH-----HHHHHHHcCCC
Confidence 0 01124588999999643333221 1234678999999998643322211 12233444668
Q ss_pred CEEEEeCCCCCC
Q 025133 189 DVVILNKVDLVS 200 (257)
Q Consensus 189 ~vivlNK~D~~~ 200 (257)
.++++||+|+.+
T Consensus 124 iIVv~NK~Dl~~ 135 (590)
T TIGR00491 124 FVVAANKIDRIP 135 (590)
T ss_pred EEEEEECCCccc
Confidence 899999999974
No 153
>PLN03118 Rab family protein; Provisional
Probab=99.10 E-value=2.1e-10 Score=95.38 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
..+.|+||||......+.... ....+.+++|+|............ .+...+.+ ...+.++|.||+
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~~vlv~D~~~~~sf~~~~~---~~~~~~~~~~~~~~~~~ilv~NK~ 130 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSY--------YRNAQGIILVYDVTRRETFTNLSD---VWGKEVELYSTNQDCVKMLVGNKV 130 (211)
T ss_pred EEEEEEECCCchhhHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhcCCCCCCEEEEEECc
Confidence 457899999976554443221 234689999999987543221100 01111111 123567889999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
|+...... ..+......+.. ...++ .|++.+.++++++..+...
T Consensus 131 Dl~~~~~i--~~~~~~~~~~~~--~~~~~e~SAk~~~~v~~l~~~l~~~ 175 (211)
T PLN03118 131 DRESERDV--SREEGMALAKEH--GCLFLECSAKTRENVEQCFEELALK 175 (211)
T ss_pred cccccCcc--CHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99765432 123333333332 23455 7999999999988777533
No 154
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.10 E-value=2.8e-10 Score=93.79 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=61.5
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~D 197 (257)
.+.|+||+|......+... ....++.+++|+|+.......... .+...+.+ ...|.++|+||+|
T Consensus 48 ~l~i~D~~G~~~~~~~~~~--------~~~~ad~vilv~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~NK~D 115 (198)
T cd04147 48 TLDILDTSGSYSFPAMRKL--------SIQNSDAFALVYAVDDPESFEEVE----RLREEILEVKEDKFVPIVVVGNKAD 115 (198)
T ss_pred EEEEEECCCchhhhHHHHH--------HhhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEEccc
Confidence 4679999997654333221 123578999999998653322110 01111111 2467899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+...+.. ...+...+.. .......++ .|++++.|+++++.....
T Consensus 116 l~~~~~~-v~~~~~~~~~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 116 SLEEERQ-VPAKDALSTV-ELDWNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred ccccccc-ccHHHHHHHH-HhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 9764221 1111222222 122334455 899999999988877643
No 155
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.10 E-value=4e-10 Score=108.74 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=90.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+.|+++|.|..|+|||||+++|.... .+ ..+.+. ++... +..... ....
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~----~~--~~e~~G---iTq~i------~~~~v~-~~~~-------------- 291 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ----IA--QKEAGG---ITQKI------GAYEVE-FEYK-------------- 291 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc----Cc--cccCCc---ccccc------ceEEEE-EEec--------------
Confidence 578999999999999999999998421 11 111110 00000 000000 0000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.|+||||......... ......|.+++|+|+.......... ....+.....|.
T Consensus 292 --------~~~~kItfiDTPGhe~F~~mr~--------rg~~~aDiaILVVDA~dGv~~QT~E-----~I~~~k~~~iPi 350 (742)
T CHL00189 292 --------DENQKIVFLDTPGHEAFSSMRS--------RGANVTDIAILIIAADDGVKPQTIE-----AINYIQAANVPI 350 (742)
T ss_pred --------CCceEEEEEECCcHHHHHHHHH--------HHHHHCCEEEEEEECcCCCChhhHH-----HHHHHHhcCceE
Confidence 1235688999999643322221 1234578999999998653321110 112233345688
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHh-------CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEI-------NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~-------~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
++++||+|+.... ...+...+... ....+++ .|+.++.|+++|+..+.
T Consensus 351 IVViNKiDl~~~~-----~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 351 IVAINKIDKANAN-----TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred EEEEECCCccccC-----HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhh
Confidence 9999999997642 23344444322 2224555 89999999999998773
No 156
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.09 E-value=8.2e-10 Score=92.98 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=77.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.+++++|++|+|||||++.|+..... ..+....|. + . +++
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~---~~~~~~~g~-i--------------~-----------i~~----------- 79 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTK---QNISDIKGP-I--------------T-----------VVT----------- 79 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccc---Ccccccccc-E--------------E-----------EEe-----------
Confidence 37899999999999999999853111 111111111 0 0 000
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE-
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV- 191 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi- 191 (257)
..+..+.++||||.. ....+ ....+|.+++|+|+.......+.. +...+...+.+.++
T Consensus 80 -----~~~~~i~~vDtPg~~--~~~l~---------~ak~aDvVllviDa~~~~~~~~~~-----i~~~l~~~g~p~vi~ 138 (225)
T cd01882 80 -----GKKRRLTFIECPNDI--NAMID---------IAKVADLVLLLIDASFGFEMETFE-----FLNILQVHGFPRVMG 138 (225)
T ss_pred -----cCCceEEEEeCCchH--HHHHH---------HHHhcCEEEEEEecCcCCCHHHHH-----HHHHHHHcCCCeEEE
Confidence 123557899999843 22221 234579999999998654332211 22233334456555
Q ss_pred EEeCCCCCCcCC-CcchHHHHHH-HHHHhCCCCEEE-EeecCC
Q 025133 192 ILNKVDLVSPER-SGDSLDELEK-EIHEINSLAHVI-RSVRCQ 231 (257)
Q Consensus 192 vlNK~D~~~~~~-~~~~l~~~~~-~l~~~~~~a~i~-~s~~~~ 231 (257)
|+||+|+++..+ .......++. ...+..++.+++ +|+.+.
T Consensus 139 VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 139 VLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 999999985432 1122233333 223356788888 665553
No 157
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.09 E-value=5.7e-10 Score=91.23 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=60.4
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLVS 200 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~~ 200 (257)
+.+.||+|..........+ ....+.+++|+|....... +... .+...+.+. ..|.++|.||+|+..
T Consensus 52 l~i~D~~G~~~~~~~~~~~--------~~~~d~iilv~d~~~~~s~-~~~~---~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 52 LGIWDTAGSERYEAMSRIY--------YRGAKAAIVCYDLTDSSSF-ERAK---FWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EEEEECCCchhhhhhhHhh--------cCCCCEEEEEEECCCHHHH-HHHH---HHHHHHHhcCCCCCEEEEEEcccccc
Confidence 5588999975433332211 2257899999999765332 1110 022223333 356789999999875
Q ss_pred cCCC--cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 201 PERS--GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 201 ~~~~--~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..+. .-....+....... ...++ +|++++.++++++..+.
T Consensus 120 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~ 162 (193)
T cd04118 120 QDRSLRQVDFHDVQDFADEI--KAQHFETSSKTGQNVDELFQKVA 162 (193)
T ss_pred cccccCccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 4311 01123333433332 24555 79999999998887664
No 158
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.08 E-value=3e-10 Score=96.16 Aligned_cols=46 Identities=26% Similarity=0.277 Sum_probs=31.4
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
+.++|+||+|+.+.++ .+ . +.. .+. -+.+|+.++.++++++..++.
T Consensus 178 p~iiV~NK~Dl~~~~~----~~---~-~~~-~~~-~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 178 PCLYVYNKIDLISIEE----LD---L-LAR-QPN-SVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred eEEEEEECccCCCHHH----HH---H-Hhc-CCC-EEEEcCCCCCCHHHHHHHHHH
Confidence 6678999999987543 22 2 222 222 345899999999999887643
No 159
>PRK12736 elongation factor Tu; Reviewed
Probab=99.08 E-value=8.6e-10 Score=100.34 Aligned_cols=99 Identities=24% Similarity=0.193 Sum_probs=59.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+..+.||||||.. .+.. ..+.....+|.+++|+|+.......... ....+...+.+. ++++||+|+
T Consensus 74 ~~~i~~iDtPGh~---~f~~-----~~~~~~~~~d~~llVvd~~~g~~~~t~~-----~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 74 KRHYAHVDCPGHA---DYVK-----NMITGAAQMDGAILVVAATDGPMPQTRE-----HILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CcEEEEEECCCHH---HHHH-----HHHHHHhhCCEEEEEEECCCCCchhHHH-----HHHHHHHcCCCEEEEEEEecCC
Confidence 4578999999943 2222 1123345689999999998754332211 223344556674 578999999
Q ss_pred CCcCCCcch-HHHHHHHHHHhCC---CCEEE-EeecCC
Q 025133 199 VSPERSGDS-LDELEKEIHEINS---LAHVI-RSVRCQ 231 (257)
Q Consensus 199 ~~~~~~~~~-l~~~~~~l~~~~~---~a~i~-~s~~~~ 231 (257)
.+.+++.+. .+++...++.... ..+++ .|+.++
T Consensus 141 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 141 VDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKA 178 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeecccc
Confidence 865443222 2356666666542 24555 788876
No 160
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.08 E-value=5.7e-10 Score=96.23 Aligned_cols=164 Identities=22% Similarity=0.207 Sum_probs=98.3
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+..-..++++|||++|||||+++|.+. +.-+-..+|.+ ...... +.+
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt----~seva~y~FTT-l~~VPG-------------~l~-------------- 106 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNT----KSEVADYPFTT-LEPVPG-------------MLE-------------- 106 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCC----CccccccCcee-cccccc-------------eEe--------------
Confidence 3445568999999999999999999953 22233333332 100000 000
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhh----h---c-----cC
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK----Y---R-----HL 175 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~----~---~-----~~ 175 (257)
..+.++.++|+||+.+......... ...+.....+|.++.|+|+.......+. . . .+
T Consensus 107 ----------Y~ga~IQild~Pgii~gas~g~grG-~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~ 175 (365)
T COG1163 107 ----------YKGAQIQLLDLPGIIEGASSGRGRG-RQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRP 175 (365)
T ss_pred ----------ecCceEEEEcCcccccCcccCCCCc-ceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCC
Confidence 3467788999999887654433211 2345566788999999999866542211 1 0 00
Q ss_pred C------------------C---h---------------------------hHHH-----HHHhhcCEEEEeCCCCCCcC
Q 025133 176 S------------------S---Y---------------------------PEAI-----HQIAFADVVILNKVDLVSPE 202 (257)
Q Consensus 176 ~------------------~---~---------------------------~~~~-----~ql~~~~vivlNK~D~~~~~ 202 (257)
. . . ..+. .....|.+.|+||+|+.+.+
T Consensus 176 p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e 255 (365)
T COG1163 176 PDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE 255 (365)
T ss_pred CceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH
Confidence 0 0 0 0011 11234788999999999854
Q ss_pred CCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 203 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 203 ~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
+ +..+.+.. --+++|++.+.++++|...++..
T Consensus 256 ~----~~~l~~~~------~~v~isa~~~~nld~L~e~i~~~ 287 (365)
T COG1163 256 E----LERLARKP------NSVPISAKKGINLDELKERIWDV 287 (365)
T ss_pred H----HHHHHhcc------ceEEEecccCCCHHHHHHHHHHh
Confidence 3 33333322 23678999999999988877544
No 161
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.08 E-value=8.8e-10 Score=86.80 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=61.2
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D~ 198 (257)
.+.++||+|..........+ ...++.+++|+|..+........ .+...+.+. ..|.++++||+|+
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~piiiv~nK~D~ 117 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIY--------YRDADGAILVYDITDADSFQKVK----KWIKELKQMRGNNISLVIVGNKIDL 117 (162)
T ss_pred EEEEEECCchHHHHHhhHHH--------hccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECccc
Confidence 47799999954433332211 13468999999987654321110 012222222 3577889999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
....+. ..+.+....+..+ ..-+..|++++.++++++...
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~-~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 118 ERQRVV--SKSEAEEYAKSVG-AKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred ccccCC--CHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHH
Confidence 865432 1234444444332 222348999999999888764
No 162
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.07 E-value=1.8e-09 Score=86.18 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=61.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||||.......... ....++.+++|+|+...... .... .+...+.+. ..|.++|.||+|
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~--------~~~~ad~~i~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~p~iiv~nK~D 119 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTA--------YYRGAMGIILVYDITDEKSF-ENIR---NWMRNIEEHASEDVERMLVGNKCD 119 (167)
T ss_pred EEEEEEeCCchHHHHHHHHH--------HhCCCCEEEEEEECcCHHHH-HhHH---HHHHHHHHhCCCCCcEEEEEECcc
Confidence 34679999996543333221 12357999999999764432 2211 012222222 246688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+... .+++ .|++++.++++++...
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 120 MEEKRVV--SKEEGEALADEYG--IKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred cccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 9864332 2344444444432 2445 8999999999887654
No 163
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.07 E-value=3.5e-10 Score=94.84 Aligned_cols=109 Identities=21% Similarity=0.208 Sum_probs=58.7
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHHHh-hcCEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIA-FADVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~ql~-~~~vivlNK 195 (257)
.++.+.|+||||....... ........|.+++|+|+...... +................. .+.++++||
T Consensus 75 ~~~~i~liDtpG~~~~~~~--------~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK 146 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPN--------MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNK 146 (219)
T ss_pred CCeEEEEEECCChHHHHHH--------HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEc
Confidence 4567899999996432111 11234468999999999863110 000000000111223333 345679999
Q ss_pred CCCCCcC----CCcchHHHHHHHHHHhCC---CCEEE-EeecCCcChh
Q 025133 196 VDLVSPE----RSGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLS 235 (257)
Q Consensus 196 ~D~~~~~----~~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~ 235 (257)
+|+.... ......+.+...++.... ..+++ +|++++.|++
T Consensus 147 ~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 147 MDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9998431 111223444444555432 24455 8999999886
No 164
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.07 E-value=2.7e-09 Score=90.50 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=50.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.|+||||..+...... .....+|.+++|+|+.......... +.......+.|.++++||+|+
T Consensus 62 ~~~~i~liDTPG~~~f~~~~~--------~~l~~aD~~IlVvd~~~g~~~~~~~-----~~~~~~~~~~P~iivvNK~D~ 128 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEVE--------RSLSVLDGAILVISAVEGVQAQTRI-----LWRLLRKLNIPTIIFVNKIDR 128 (237)
T ss_pred CCEEEEEEeCCCccchHHHHH--------HHHHHhCeEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEECccc
Confidence 456789999999876433322 1233568999999998754322111 222334456788999999998
Q ss_pred CCcCCCcchHHHHHHHH
Q 025133 199 VSPERSGDSLDELEKEI 215 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l 215 (257)
...+. .+.++++++.+
T Consensus 129 ~~a~~-~~~~~~i~~~~ 144 (237)
T cd04168 129 AGADL-EKVYQEIKEKL 144 (237)
T ss_pred cCCCH-HHHHHHHHHHH
Confidence 86532 23344444433
No 165
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.06 E-value=5.2e-10 Score=89.54 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=60.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
..+.+.||+|......+... ....++.+|+|+|......... +...+..+ ..|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEKFGGLRDG--------YYIGGQCAIIMFDVTSRVTYKN-------VPNWHRDLVRVCGNIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChhhccccHH--------HhcCCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCcEEEEEEc
Confidence 45779999997543322221 1235789999999986543211 11122222 4677888999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+|+..... .....+ +.+.+ ..+++ .|++.+.++++++.....
T Consensus 114 ~Dl~~~~~----~~~~~~-~~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 114 VDIKDRKV----KAKQIT-FHRKK-NLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred hhcccccC----CHHHHH-HHHHc-CCEEEEEeCCCCCChHHHHHHHHH
Confidence 99974332 112222 22222 23455 899999999999887643
No 166
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.06 E-value=2.1e-09 Score=85.87 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=59.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHH------HhhcCEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQ------IAFADVVI 192 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~q------l~~~~viv 192 (257)
..+.|.||||......+.... ....+.+++++|....... .... ....... -..|.++|
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~-----~~~~~~~~~~~~~~~~piilv 120 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPF--------YRGSDCCLLTFAVDDSQSFQNLSNW-----KKEFIYYADVKEPESFPFVVL 120 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHH--------hcCCCEEEEEEECCCHHHHHhHHHH-----HHHHHHhcccccCCCCcEEEE
Confidence 456789999965433332211 1245778888877654321 1111 0111111 12467899
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
.||+|+..... ..+++.++.++.+...-+..|++++.++.+++...
T Consensus 121 ~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~ 166 (170)
T cd04116 121 GNKNDIPERQV---STEEAQAWCRENGDYPYFETSAKDATNVAAAFEEA 166 (170)
T ss_pred EECcccccccc---CHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHH
Confidence 99999874321 24556666665543323347999999999887654
No 167
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.05 E-value=8.2e-10 Score=102.61 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=60.8
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh-cCEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D 197 (257)
.+.+++||||||.. .+.... ......+|.+++|+|+..+....... .......++. +.++++||+|
T Consensus 105 ~~~~i~~iDTPGh~---~f~~~~-----~~~l~~aD~allVVDa~~G~~~qt~~-----~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGHE---QYTRNM-----ATGASTCDLAILLIDARKGVLDQTRR-----HSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCcH---HHHHHH-----HHHHhhCCEEEEEEECCCCccccchH-----HHHHHHHhCCCceEEEEEeec
Confidence 35679999999932 232211 12346789999999998764332110 1122333443 4577999999
Q ss_pred CCCcCCCcchHHHHHHHH----HHh--CCCCEEE-EeecCCcChhhh
Q 025133 198 LVSPERSGDSLDELEKEI----HEI--NSLAHVI-RSVRCQVDLSEV 237 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l----~~~--~~~a~i~-~s~~~~~~~~~l 237 (257)
+.+.++ ..++.+...+ +.. .+..+++ +|++++.++..+
T Consensus 172 ~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 172 LVDYSE--EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cccchh--HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 985332 1233333333 332 2345665 899999888654
No 168
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.05 E-value=2.7e-10 Score=91.24 Aligned_cols=106 Identities=16% Similarity=0.110 Sum_probs=56.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~vivlNK~ 196 (257)
+..+.++||||......+... ....++.+++|+|+...... ...... +..... ....|.++|+||+
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~--------~~~~a~~ii~V~D~s~~~s~-~~~~~~--l~~l~~~~~~~~~piliv~NK~ 110 (167)
T cd04161 42 KYEVCIFDLGGGANFRGIWVN--------YYAEAHGLVFVVDSSDDDRV-QEVKEI--LRELLQHPRVSGKPILVLANKQ 110 (167)
T ss_pred CEEEEEEECCCcHHHHHHHHH--------HHcCCCEEEEEEECCchhHH-HHHHHH--HHHHHcCccccCCcEEEEEeCC
Confidence 355789999997544333221 12457899999999865321 111000 011111 1245789999999
Q ss_pred CCCCcCCCcchHHHHHHHH--HHh----CCCCEEE-EeecCC------cChhhhhcC
Q 025133 197 DLVSPERSGDSLDELEKEI--HEI----NSLAHVI-RSVRCQ------VDLSEVLNC 240 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l--~~~----~~~a~i~-~s~~~~------~~~~~l~~~ 240 (257)
|+..... ..++...+ ..+ +....++ .|++++ .|+.+-++.
T Consensus 111 Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~w 163 (167)
T cd04161 111 DKKNALL----GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRW 163 (167)
T ss_pred CCcCCCC----HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHH
Confidence 9876543 23333322 122 1112344 677776 567655543
No 169
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.05 E-value=4.4e-10 Score=86.26 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=62.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+.++.++|+||.......... .....+.+++|+|+.........................+.++++||+|+.
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRL--------YYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred EEEEEEEecCChHHHHhHHHH--------HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 456889999997654433221 223568999999999765432221000000111123345789999999998
Q ss_pred CcCCCcchHHHH--HHHHHHhCCCCEEE-EeecCCcChhhhhcC
Q 025133 200 SPERSGDSLDEL--EKEIHEINSLAHVI-RSVRCQVDLSEVLNC 240 (257)
Q Consensus 200 ~~~~~~~~l~~~--~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~ 240 (257)
..... ... ..... .....+++ .|+..+.++.+++..
T Consensus 116 ~~~~~----~~~~~~~~~~-~~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 116 EERVV----SEEELAEQLA-KELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred cccch----HHHHHHHHHH-hhcCCcEEEEecCCCCChHHHHHH
Confidence 76542 211 12222 23344555 788888899888764
No 170
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.04 E-value=4.9e-09 Score=84.45 Aligned_cols=148 Identities=21% Similarity=0.249 Sum_probs=82.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+++++|++|+||||++..+... ..+.+++++..|+.. ......+... ...+..+ ... ....+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~-~~~~~~l~~~~~~~~~~~---~~~-------~~~~~~~~~ 70 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR-PAAIEQLRVLGEQVGVPV---FEE-------GEGKDPVSI 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC-hHHHHHHHHhcccCCeEE---Eec-------CCCCCHHHH
Confidence 5789999999999999998753 457899999988753 2211111110 0111111 000 111122222
Q ss_pred HHHHHH--hcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQ--RKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~--~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
+.+.+. ...++++++|||+|... .......+. .+......+.+++|+|+.......+. ...+..+.+
T Consensus 71 ~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~---~l~~~~~~~~~~lVv~~~~~~~~~~~------~~~~~~~~~- 140 (173)
T cd03115 71 AKRAIEHAREENFDVVIVDTAGRLQIDENLMEELK---KIKRVVKPDEVLLVVDAMTGQDAVNQ------AKAFNEALG- 140 (173)
T ss_pred HHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHH---HHHhhcCCCeEEEEEECCCChHHHHH------HHHHHhhCC-
Confidence 212111 24578999999999653 223333221 12223347889999999754443321 122223333
Q ss_pred cCEEEEeCCCCCCcC
Q 025133 188 ADVVILNKVDLVSPE 202 (257)
Q Consensus 188 ~~vivlNK~D~~~~~ 202 (257)
.+.+|+||.|.....
T Consensus 141 ~~~viltk~D~~~~~ 155 (173)
T cd03115 141 ITGVILTKLDGDARG 155 (173)
T ss_pred CCEEEEECCcCCCCc
Confidence 578999999987653
No 171
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.04 E-value=2.9e-09 Score=85.47 Aligned_cols=105 Identities=13% Similarity=0.004 Sum_probs=60.1
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D 197 (257)
.+++.|++|......+.. .....+|.+++|+|+...... .. +.....++ ..|.++|+||+|
T Consensus 55 ~l~~~d~~g~~~~~~~~~--------~~~~~~d~~llv~d~~~~~s~-~~------~~~~~~~~~~~~~~p~iiv~NK~D 119 (169)
T cd01892 55 YLILREVGEDEVAILLND--------AELAACDVACLVYDSSDPKSF-SY------CAEVYKKYFMLGEIPCLFVAAKAD 119 (169)
T ss_pred EEEEEecCCcccccccch--------hhhhcCCEEEEEEeCCCHHHH-HH------HHHHHHHhccCCCCeEEEEEEccc
Confidence 356778888653322111 112468999999999765332 21 11222222 467899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
+.+..+. .........+..+....+..|+..+.++++++.....
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 163 (169)
T cd01892 120 LDEQQQR--YEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLAT 163 (169)
T ss_pred ccccccc--cccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHH
Confidence 8754321 0111222233333222366899999999998876643
No 172
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.04 E-value=4.8e-10 Score=90.56 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=60.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~~~vivlNK~ 196 (257)
+..+.+.||+|..........+ ...++.+++|+|+++......... .+...+.+ . ..|.++|.||+
T Consensus 56 ~~~l~l~D~~G~~~~~~~~~~~--------~~~ad~ii~v~D~t~~~s~~~~~~---~l~~~~~~~~~~~~piilv~NK~ 124 (175)
T smart00177 56 NISFTVWDVGGQDKIRPLWRHY--------YTNTQGLIFVVDSNDRDRIDEARE---ELHRMLNEDELRDAVILVFANKQ 124 (175)
T ss_pred CEEEEEEECCCChhhHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHHH---HHHHHhhCHhhcCCcEEEEEeCc
Confidence 3557899999986554443322 234789999999986432111000 01111111 1 24678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHH--h-CCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHE--I-NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~--~-~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+..... .+++...+.. . .....++ .|++++.|+++++..+
T Consensus 125 Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 169 (175)
T smart00177 125 DLPDAMK----AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred CcccCCC----HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 9865422 2333333321 1 1112333 7999999999988754
No 173
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.04 E-value=2.1e-09 Score=89.04 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=42.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH--HH---HhhcCEEEEe
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI--HQ---IAFADVVILN 194 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~--~q---l~~~~vivlN 194 (257)
+..+.++||||.......... .++.. ++.+|+|+|+......+...... +...+ .+ -..|.+++.|
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~-----~~~~~--~~~vV~VvD~~~~~~~~~~~~~~--l~~il~~~~~~~~~~pvliv~N 117 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLE-----TLKNS--AKGIVFVVDSATFQKNLKDVAEF--LYDILTDLEKVKNKIPVLIACN 117 (203)
T ss_pred CceEEEEECCCCHHHHHHHHH-----HHhcc--CCEEEEEEECccchhHHHHHHHH--HHHHHHHHhhccCCCCEEEEec
Confidence 355889999996543322211 11111 48999999999874322221100 11111 11 1457788999
Q ss_pred CCCCCCcCC
Q 025133 195 KVDLVSPER 203 (257)
Q Consensus 195 K~D~~~~~~ 203 (257)
|+|+.....
T Consensus 118 K~Dl~~a~~ 126 (203)
T cd04105 118 KQDLFTAKP 126 (203)
T ss_pred chhhcccCC
Confidence 999987654
No 174
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.04 E-value=6.2e-10 Score=90.55 Aligned_cols=107 Identities=17% Similarity=0.137 Sum_probs=59.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~~~vivlNK~D 197 (257)
..+.++||+|..........+ ...++.+|+|+|+.+.... ..... .+...+.. . ..+.++|.||.|
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~--------~~~ad~iI~v~D~t~~~s~-~~~~~--~l~~~~~~~~~~~~piilv~NK~D 129 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHY--------YQNTNGLIFVVDSNDRERI-GDARE--ELERMLSEDELRDAVLLVFANKQD 129 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHH--------hcCCCEEEEEEeCCCHHHH-HHHHH--HHHHHHhCHhhcCCCEEEEEeCCC
Confidence 457899999975544333221 2357899999999764321 11100 01111111 1 246788899999
Q ss_pred CCCcCCCcchHHHHHHHHHHh-CCCC--EEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEI-NSLA--HVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~-~~~a--~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+..... ..++...+... .+.. .++ .|++++.|+.+++..+.
T Consensus 130 l~~~~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 130 LPNAMS----TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCCCCC----HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 865322 23333333211 0111 233 58999999999988764
No 175
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.04 E-value=1.2e-08 Score=90.97 Aligned_cols=169 Identities=18% Similarity=0.173 Sum_probs=95.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|+.|+||||++.+|... ..+.+++++..|+.. .+....+..... .++.+ ..+....++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR-~gAveQLk~yae~lgvpv----------~~~~dp~dL 273 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR-SGAVEQFQGYADKLDVEL----------IVATSPAEL 273 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC-ccHHHHHHHHhhcCCCCE----------EecCCHHHH
Confidence 4568999999999999999999753 457899999999764 322222222111 11111 112345566
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI- 185 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql- 185 (257)
...+..+-. ..++|+|||||+|.... ...++.+. .+......+.+++|+++........ ..+.+.
T Consensus 274 ~~al~~l~~-~~~~D~VLIDTAGr~~~d~~~l~EL~---~l~~~~~p~~~~LVLsag~~~~d~~---------~i~~~f~ 340 (407)
T PRK12726 274 EEAVQYMTY-VNCVDHILIDTVGRNYLAEESVSEIS---AYTDVVHPDLTCFTFSSGMKSADVM---------TILPKLA 340 (407)
T ss_pred HHHHHHHHh-cCCCCEEEEECCCCCccCHHHHHHHH---HHhhccCCceEEEECCCcccHHHHH---------HHHHhcC
Confidence 666655431 24689999999996542 33333221 1122234456677888754433322 122222
Q ss_pred -hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCC
Q 025133 186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ 231 (257)
Q Consensus 186 -~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~ 231 (257)
-..+-+|++|.|.... ...+-......+ .++..-+.|+
T Consensus 341 ~l~i~glI~TKLDET~~------~G~~Lsv~~~tg--lPIsylt~GQ 379 (407)
T PRK12726 341 EIPIDGFIITKMDETTR------IGDLYTVMQETN--LPVLYMTDGQ 379 (407)
T ss_pred cCCCCEEEEEcccCCCC------ccHHHHHHHHHC--CCEEEEecCC
Confidence 2357899999998754 344444443322 3454444443
No 176
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.03 E-value=1.9e-09 Score=98.68 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=85.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|++|+||||++.+|... ..+++++++..|... ......+... ...++.+ .. .....+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R-~aa~eQL~~la~~~gvp~---~~-------~~~~~d~ 162 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR-PAAYDQLKQLAEKIGVPF---YG-------DPDNKDA 162 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC-HHHHHHHHHHHHHcCCcE---Ee-------cCCccCH
Confidence 3458899999999999999999764 458899999998754 2111111110 0001100 00 0011233
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+.+.+......++|||||+|... ....++.+. .+......+.+++|+|+.......+. ...+...-
T Consensus 163 ~~i~~~al~~~~~~DvVIIDTAGr~~~d~~lm~El~---~l~~~~~pdevlLVvda~~gq~av~~-------a~~F~~~l 232 (437)
T PRK00771 163 VEIAKEGLEKFKKADVIIVDTAGRHALEEDLIEEMK---EIKEAVKPDEVLLVIDATIGQQAKNQ-------AKAFHEAV 232 (437)
T ss_pred HHHHHHHHHHhhcCCEEEEECCCcccchHHHHHHHH---HHHHHhcccceeEEEeccccHHHHHH-------HHHHHhcC
Confidence 33333333333346999999999554 344444332 22334457889999999876433221 11122111
Q ss_pred hcCEEEEeCCCCCCc
Q 025133 187 FADVVILNKVDLVSP 201 (257)
Q Consensus 187 ~~~vivlNK~D~~~~ 201 (257)
..+-+|+||.|....
T Consensus 233 ~i~gvIlTKlD~~a~ 247 (437)
T PRK00771 233 GIGGIIITKLDGTAK 247 (437)
T ss_pred CCCEEEEecccCCCc
Confidence 246889999997644
No 177
>PRK00049 elongation factor Tu; Reviewed
Probab=99.03 E-value=1.5e-09 Score=98.85 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=59.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE-EEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v-ivlNK~D~ 198 (257)
+.++.||||||.. .+... .......+|.+++|+|+.......... ....+...+.+.+ +++||+|+
T Consensus 74 ~~~i~~iDtPG~~---~f~~~-----~~~~~~~aD~~llVVDa~~g~~~qt~~-----~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 74 KRHYAHVDCPGHA---DYVKN-----MITGAAQMDGAILVVSAADGPMPQTRE-----HILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CeEEEEEECCCHH---HHHHH-----HHhhhccCCEEEEEEECCCCCchHHHH-----HHHHHHHcCCCEEEEEEeecCC
Confidence 4678999999973 23221 123456789999999998754432211 2333444556766 47999999
Q ss_pred CCcCCCcc-hHHHHHHHHHHhC---CCCEEE-EeecCCc
Q 025133 199 VSPERSGD-SLDELEKEIHEIN---SLAHVI-RSVRCQV 232 (257)
Q Consensus 199 ~~~~~~~~-~l~~~~~~l~~~~---~~a~i~-~s~~~~~ 232 (257)
.+.++..+ ...++...++.+. ...+++ .|+..+.
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 141 VDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeeccccc
Confidence 86433211 2235556665542 234555 6777653
No 178
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.03 E-value=1.1e-09 Score=87.63 Aligned_cols=105 Identities=16% Similarity=0.108 Sum_probs=59.8
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D 197 (257)
.+.++||||......+.+.. ....+.+++|+|..+........ .+...+.+. ..|.+++.||+|
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~vlv~~~~~~~s~~~~~----~~~~~i~~~~~~~~~piiiv~nK~D 117 (168)
T cd04177 50 DLEILDTAGTEQFTAMRELY--------IKSGQGFLLVYSVTSEASLNELG----ELREQVLRIKDSDNVPMVLVGNKAD 117 (168)
T ss_pred EEEEEeCCCcccchhhhHHH--------HhhCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhCCCCCCEEEEEEChh
Confidence 46699999976544433322 12356788899887643321110 012222221 346688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...... ..+......+..+ ..+++ .|++++.++++++...
T Consensus 118 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 118 LEDDRQV--SREDGVSLSQQWG-NVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ccccCcc--CHHHHHHHHHHcC-CceEEEeeCCCCCCHHHHHHHH
Confidence 8765432 1233333333332 23455 8999999999887655
No 179
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.02 E-value=2.7e-10 Score=98.07 Aligned_cols=156 Identities=23% Similarity=0.283 Sum_probs=96.6
Q ss_pred ccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC--CCcccccchhhhhcCCCCceeeeeeecCCCceeec
Q 025133 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE--FGEEIGVERAMINEGEGGALVEEWVELANGCICCT 102 (257)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~--~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (257)
.+..+.+.|+|.++|+.|||||||+++|..+ ++.-++ |.+ .+.+.... .+
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~A------al~p~drLFAT-LDpT~h~a-------------~L-------- 222 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALTKA------ALYPNDRLFAT-LDPTLHSA-------------HL-------- 222 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHHhh------hcCccchhhee-ccchhhhc-------------cC--------
Confidence 4456778999999999999999999999842 111111 222 22222211 11
Q ss_pred cchhHHHHHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 103 VKHSLVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
..+..+++.||.|+.. |..+.+.| ...+.+....|.++.|+|.+......... ....
T Consensus 223 ---------------psg~~vlltDTvGFisdLP~~LvaAF--~ATLeeVaeadlllHvvDiShP~ae~q~e----~Vl~ 281 (410)
T KOG0410|consen 223 ---------------PSGNFVLLTDTVGFISDLPIQLVAAF--QATLEEVAEADLLLHVVDISHPNAEEQRE----TVLH 281 (410)
T ss_pred ---------------CCCcEEEEeechhhhhhCcHHHHHHH--HHHHHHHhhcceEEEEeecCCccHHHHHH----HHHH
Confidence 1245688999999664 66666655 56788889999999999998754432221 1334
Q ss_pred HHHHHhhcC-------EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 181 AIHQIAFAD-------VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 181 ~~~ql~~~~-------vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.+.|+.-++ +=|=||+|..+.+- .. -+...+-+|+.++-|++++++...
T Consensus 282 vL~~igv~~~pkl~~mieVdnkiD~e~~~~------------e~-E~n~~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 282 VLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------------EE-EKNLDVGISALTGDGLEELLKAEE 337 (410)
T ss_pred HHHhcCCCcHHHHhHHHhhccccccccccC------------cc-ccCCccccccccCccHHHHHHHHH
Confidence 456665543 22448888665421 00 122234567777777777776653
No 180
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.02 E-value=2.3e-09 Score=85.87 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=62.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||||......+... .....+.+++|+|..+.... +.... .+...+.+. ..|.++|.||+|+
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~-~~~~~--~~~~~i~~~~~~~piilv~nK~Dl 114 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPL--------SYPDTDVFLICFSVDSPASF-ENVKE--KWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred EEEEEEECCCCcccchhchh--------hcCCCCEEEEEEECCCHHHH-HHHHH--HHHHHHHhhCCCCCEEEEecChhh
Confidence 45779999997544332221 12357899999999865332 11100 011122221 3577889999999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
...... .-..++..+..+..+. ..++ .|++++.++++++....
T Consensus 115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~lf~~l~ 168 (174)
T smart00174 115 REDKSTLRELSKQKQEPVTYEQGEALAKRIGA-VKYLECSALTQEGVREVFEEAI 168 (174)
T ss_pred hhChhhhhhhhcccCCCccHHHHHHHHHHcCC-cEEEEecCCCCCCHHHHHHHHH
Confidence 763210 0112233334444332 2444 79999999999987653
No 181
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.02 E-value=3.1e-09 Score=84.65 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||||.......... ....++.+++|+|..+.... .... .+.....+. ..+.++|.||+|
T Consensus 51 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~s~-~~~~---~~~~~~~~~~~~~~~iiiv~nK~D 118 (166)
T cd04122 51 IKLQIWDTAGQERFRAVTRS--------YYRGAAGALMVYDITRRSTY-NHLS---SWLTDARNLTNPNTVIFLIGNKAD 118 (166)
T ss_pred EEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 34679999996543333221 12357899999999865432 1110 012222222 235688899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++.+. ..+....+.+.. ..+++ .|++++.|+.+++...
T Consensus 119 l~~~~~~--~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 119 LEAQRDV--TYEEAKQFADEN--GLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred cccccCc--CHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHH
Confidence 9765432 234444444433 23555 7999999999876543
No 182
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.02 E-value=5.2e-09 Score=85.04 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|.......... ....++.+++|+|............ .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~ii~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 117 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPL--------SYPDVDVLLICYAVDNPTSLDNVED---KWFPEVNHFCPGTPIMLVGLKTDL 117 (187)
T ss_pred EEEEEEECCCchhHHHHHHH--------hCCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEeChhh
Confidence 34679999996543332221 1235789999999986433211100 011111111 3477889999998
Q ss_pred CCcCCC--cchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 199 VSPERS--GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~--~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
...... .-...+..+..+..+...-+..|++++.++++++....
T Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 163 (187)
T cd04132 118 RKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAI 163 (187)
T ss_pred hhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHH
Confidence 764310 01123444444443322223478999999998877653
No 183
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.02 E-value=3.2e-09 Score=91.63 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=45.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+.++.++||||..+...... .....+|.+++|+|+.......... ......+.+.|.++++||+|+
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~--------~~l~~aD~~i~Vvd~~~g~~~~~~~-----~~~~~~~~~~p~iivvNK~D~ 128 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETR--------AALRAADAALVVVSAQSGVEVGTEK-----LWEFADEAGIPRIIFINKMDR 128 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHH--------HHHHHCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEECCcc
Confidence 356788999999764322221 1223578999999998754322110 122334556788999999998
Q ss_pred CCc
Q 025133 199 VSP 201 (257)
Q Consensus 199 ~~~ 201 (257)
...
T Consensus 129 ~~~ 131 (268)
T cd04170 129 ERA 131 (268)
T ss_pred CCC
Confidence 865
No 184
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.02 E-value=1e-08 Score=88.31 Aligned_cols=193 Identities=18% Similarity=0.188 Sum_probs=108.5
Q ss_pred EccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCceeee
Q 025133 14 IDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEE 90 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~ 90 (257)
++++.+.+.+...+ ..+.+.+++.|++|+||||++..|... ..+.+++++..|... .+.-..+..... .+..+
T Consensus 58 ~~~l~~~~~~~~~~-~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-i~~~~ql~~~~~~~~~~~-- 133 (270)
T PRK06731 58 LEDMSSHFNTENVF-EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYVKTIGFEV-- 133 (270)
T ss_pred hcccEEeeCCcccc-cCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHhhhcCceE--
Confidence 56666666544333 336679999999999999999999764 346789999988653 222222222110 01100
Q ss_pred eeecCCCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHH
Q 025133 91 WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQI 169 (257)
Q Consensus 91 ~~~l~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~ 169 (257)
..+....++...+..+- +..++|++||||+|-.. ....++.+. . +......+.+++|+||.......
T Consensus 134 --------~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~--~-~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 134 --------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMI--E-TMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred --------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHH--H-HHhhhCCCeEEEEEcCccCHHHH
Confidence 11122345555555543 23578999999999654 233333221 1 11223445689999998655443
Q ss_pred hhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 170 DKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 170 ~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
... ...+.. -..+-++++|.|.... ...+....... ..+|..-+.|+.=.++|
T Consensus 202 ~~~------~~~f~~-~~~~~~I~TKlDet~~------~G~~l~~~~~~--~~Pi~~it~Gq~vp~di 254 (270)
T PRK06731 202 IEI------ITNFKD-IHIDGIVFTKFDETAS------SGELLKIPAVS--SAPIVLMTDGQDVKKNI 254 (270)
T ss_pred HHH------HHHhCC-CCCCEEEEEeecCCCC------ccHHHHHHHHH--CcCEEEEeCCCCCCcch
Confidence 221 122222 2468999999998764 24444444433 23555555554333333
No 185
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.01 E-value=1.9e-09 Score=86.47 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=59.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||+|......+.. ......+.+++++|............ .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~~~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 117 (175)
T cd01870 49 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSIDSPDSLENIPE---KWTPEVKHFCPNVPIILVGNKKDL 117 (175)
T ss_pred EEEEEEeCCCchhhhhccc--------cccCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeeChhc
Confidence 4578999999743322211 11245678888888875432111100 011222221 4577889999998
Q ss_pred CCcCCCc----------chHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 199 VSPERSG----------DSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~----------~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
....... -.....+...+..+...-+..|++.+.|+++++..+
T Consensus 118 ~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 170 (175)
T cd01870 118 RNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMA 170 (175)
T ss_pred ccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHH
Confidence 7543210 011223333333333323338899999999988765
No 186
>PTZ00369 Ras-like protein; Provisional
Probab=99.01 E-value=3.3e-09 Score=86.68 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=61.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D 197 (257)
.+-++||||..+...+.... ....+.+++|+|....... +.... +...+.+. ..|.++|.||+|
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~--------~~~~d~iilv~D~s~~~s~-~~~~~---~~~~i~~~~~~~~~piiiv~nK~D 121 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQY--------MRTGQGFLCVYSITSRSSF-EEIAS---FREQILRVKDKDRVPMILVGNKCD 121 (189)
T ss_pred EEEEEeCCCCccchhhHHHH--------hhcCCEEEEEEECCCHHHH-HHHHH---HHHHHHHhcCCCCCCEEEEEECcc
Confidence 35589999977655544322 2246899999999865431 11110 11122221 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+.... .........+..+ .+++ +|++++.|+.+++....
T Consensus 122 l~~~~~i--~~~~~~~~~~~~~--~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 122 LDSERQV--STGEGQELAKSFG--IPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred ccccccc--CHHHHHHHHHHhC--CEEEEeeCCCCCCHHHHHHHHH
Confidence 8654322 1223333333332 3555 79999999998877664
No 187
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.01 E-value=1.7e-09 Score=102.81 Aligned_cols=131 Identities=24% Similarity=0.258 Sum_probs=70.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcc---cccchhhhhcCCCCceeeeeeecCCCceeeccch
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEE---IGVERAMINEGEGGALVEEWVELANGCICCTVKH 105 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~---~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~ 105 (257)
..+.|++.+.|..|+|||||+++|... .+...++|.. ++.+...... ..-..|
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~------~v~~~~~g~itq~ig~~~~~~~~----------~~~~~~-------- 58 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGT------AVAAKEAGGITQHIGATEVPIDV----------IEKIAG-------- 58 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCc------ccccCCCCceEEeeceeeccccc----------cccccc--------
Confidence 467899999999999999999999742 2333333320 0100000000 000000
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
.....+. .+..-+.+.|+||||......+.. ......|.+++|+|+.......... ....+...
T Consensus 59 ~~~~~~~---~~~~~~~i~~iDTPG~e~f~~~~~--------~~~~~aD~~IlVvDa~~g~~~qt~e-----~i~~~~~~ 122 (586)
T PRK04004 59 PLKKPLP---IKLKIPGLLFIDTPGHEAFTNLRK--------RGGALADIAILVVDINEGFQPQTIE-----AINILKRR 122 (586)
T ss_pred eeccccc---cccccCCEEEEECCChHHHHHHHH--------HhHhhCCEEEEEEECCCCCCHhHHH-----HHHHHHHc
Confidence 0000000 000113478999999754433322 1234578999999998743222111 12233445
Q ss_pred hhcCEEEEeCCCCC
Q 025133 186 AFADVVILNKVDLV 199 (257)
Q Consensus 186 ~~~~vivlNK~D~~ 199 (257)
..|.++++||+|+.
T Consensus 123 ~vpiIvviNK~D~~ 136 (586)
T PRK04004 123 KTPFVVAANKIDRI 136 (586)
T ss_pred CCCEEEEEECcCCc
Confidence 67889999999986
No 188
>PRK12735 elongation factor Tu; Reviewed
Probab=99.00 E-value=4.3e-09 Score=95.84 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE-EEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV-ILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi-vlNK~D~ 198 (257)
+.++.|+||||.. .+.. ........+|.+++|+|+......... .....+...+.+.++ ++||+|+
T Consensus 74 ~~~i~~iDtPGh~---~f~~-----~~~~~~~~aD~~llVvda~~g~~~qt~-----e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 74 NRHYAHVDCPGHA---DYVK-----NMITGAAQMDGAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CcEEEEEECCCHH---HHHH-----HHHhhhccCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCeEEEEEEecCC
Confidence 4578999999963 2222 122345578999999999875332211 022233444556664 6999999
Q ss_pred CCcCCCcchH-HHHHHHHHHhCC---CCEEE-EeecCCc
Q 025133 199 VSPERSGDSL-DELEKEIHEINS---LAHVI-RSVRCQV 232 (257)
Q Consensus 199 ~~~~~~~~~l-~~~~~~l~~~~~---~a~i~-~s~~~~~ 232 (257)
.+.++..+.+ .+++..++.+.- ..+++ .|+..+.
T Consensus 141 ~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (396)
T PRK12735 141 VDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccc
Confidence 8644321112 255666665431 24555 6777763
No 189
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.99 E-value=2.5e-09 Score=87.48 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=61.3
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEeC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILNK 195 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlNK 195 (257)
.+.|+||+|......+.... ....+.+++|+|..+.... +... .+...+.+. ..|.++|.||
T Consensus 48 ~l~i~Dt~G~~~~~~~~~~~--------~~~ad~~ilv~d~~~~~s~-~~~~---~~~~~i~~~~~~~~~~~piilvgNK 115 (190)
T cd04144 48 MLEVLDTAGQEEYTALRDQW--------IREGEGFILVYSITSRSTF-ERVE---RFREQIQRVKDESAADVPIMIVGNK 115 (190)
T ss_pred EEEEEECCCchhhHHHHHHH--------HHhCCEEEEEEECCCHHHH-HHHH---HHHHHHHHHhcccCCCCCEEEEEEC
Confidence 46789999975444333211 2346899999998765432 1110 012222221 2467889999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+|+....+.. ........+..+ .+.+ .|++.+.|+++++....-
T Consensus 116 ~Dl~~~~~v~--~~~~~~~~~~~~--~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 116 CDKVYEREVS--TEEGAALARRLG--CEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred hhccccCccC--HHHHHHHHHHhC--CEEEEecCCCCCCHHHHHHHHHH
Confidence 9997644321 222333333333 3445 799999999998887753
No 190
>PLN03127 Elongation factor Tu; Provisional
Probab=98.99 E-value=1.6e-09 Score=99.96 Aligned_cols=71 Identities=27% Similarity=0.279 Sum_probs=45.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+.+++||||||.... .... ......+|.+++|+|+.......+.. ....+..++.+. ++++||+|+
T Consensus 123 ~~~i~~iDtPGh~~f---~~~~-----~~g~~~aD~allVVda~~g~~~qt~e-----~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 123 KRHYAHVDCPGHADY---VKNM-----ITGAAQMDGGILVVSAPDGPMPQTKE-----HILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CeEEEEEECCCccch---HHHH-----HHHHhhCCEEEEEEECCCCCchhHHH-----HHHHHHHcCCCeEEEEEEeecc
Confidence 467899999997542 2111 12334589999999998654332211 233445566675 568999999
Q ss_pred CCcCC
Q 025133 199 VSPER 203 (257)
Q Consensus 199 ~~~~~ 203 (257)
++.++
T Consensus 190 v~~~~ 194 (447)
T PLN03127 190 VDDEE 194 (447)
T ss_pred CCHHH
Confidence 86443
No 191
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.99 E-value=2.8e-09 Score=90.29 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCCEEEEecCCCCCc------HHHHHhcccccccccce-eeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEE
Q 025133 120 RLDHILLETTGLANP------APLASVLWLDDQLESAV-RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 192 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~------~~~~~~~~~~~~~~~~~-~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~viv 192 (257)
.+++.||||||+... ..+...+. +....... ..+.+++|+|+.......+.. .+...+.....+.++|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~-~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l----~ia~~ld~~~~rti~V 198 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIK-DMIKQFISKEECLILAVTPANVDLANSDAL----KLAKEVDPQGERTIGV 198 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHH-HHHHHHHhCccCeEEEEEECCCCCCchhHH----HHHHHHHHcCCcEEEE
Confidence 389999999998632 22211110 11111112 335899999997654332210 1233344455678999
Q ss_pred EeCCCCCCcC
Q 025133 193 LNKVDLVSPE 202 (257)
Q Consensus 193 lNK~D~~~~~ 202 (257)
+||+|..++.
T Consensus 199 iTK~D~~~~~ 208 (240)
T smart00053 199 ITKLDLMDEG 208 (240)
T ss_pred EECCCCCCcc
Confidence 9999999764
No 192
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.99 E-value=4.9e-09 Score=89.50 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH------------Hhhc
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------------IAFA 188 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------------l~~~ 188 (257)
+.+-|.||+|......+... .....+.+++|+|..+.... +.... +...+.+ ...|
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~--------~~~~ad~iIlVfdv~~~~Sf-~~i~~---~~~~I~~~k~~~~~~~~~~~~~p 115 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRL--------SILTGDVFILVFSLDNRESF-EEVCR---LREQILETKSCLKNKTKENVKIP 115 (247)
T ss_pred EEEEEEECCCChhhhHHHHH--------HhccCCEEEEEEeCCCHHHH-HHHHH---HHHHHHHhhcccccccccCCCCc
Confidence 44669999997543332211 12346889999998864321 11100 1111111 1357
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++|.||+|+....+ ...+++.+.+...+ ...++ .|++++.++++++..+.
T Consensus 116 iIivgNK~Dl~~~~~--v~~~ei~~~~~~~~-~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 116 MVICGNKADRDFPRE--VQRDEVEQLVGGDE-NCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred EEEEEECccchhccc--cCHHHHHHHHHhcC-CCEEEEEeCCCCCCHHHHHHHHH
Confidence 789999999975332 13455666554333 33445 89999999999987763
No 193
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.98 E-value=3.7e-09 Score=84.99 Aligned_cols=108 Identities=20% Similarity=0.090 Sum_probs=59.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh----cCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF----ADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~----~~vivlNK~ 196 (257)
..+.|.||||.......... ....++.+++|+|+........ .. .+...+.+-.. +.++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~~ilv~d~~~~~s~~~-~~---~~~~~~~~~~~~~~~~iilVgnK~ 116 (170)
T cd04108 49 FSLQLWDTAGQERFKCIAST--------YYRGAQAIIIVFDLTDVASLEH-TR---QWLEDALKENDPSSVLLFLVGTKK 116 (170)
T ss_pred EEEEEEeCCChHHHHhhHHH--------HhcCCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhcCCCCCeEEEEEECh
Confidence 34679999997543333221 1235789999999976332211 10 01111111111 257899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+..+............++. . ++++ .|++.+.++++++....
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 117 DLSSPAQYALMEQDAIKLAAEM-Q-AEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred hcCccccccccHHHHHHHHHHc-C-CeEEEEECCCCCCHHHHHHHHH
Confidence 9876533111112222333332 2 3444 79999999999887654
No 194
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.98 E-value=1.2e-09 Score=88.32 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=62.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+-|.++++|++|||||+|...|..... .-.+.+.++......
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~--~~T~tS~e~n~~~~~------------------------------------ 43 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKT--VPTVTSMENNIAYNV------------------------------------ 43 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-----B---SSEEEECCG------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCc--CCeeccccCCceEEe------------------------------------
Confidence 347899999999999999999986310 001111111100000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-----
Q 025133 111 LEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----- 184 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----- 184 (257)
....+..+-+||+||-..- ..+.+.+ .....+..||||||+............. +...+..
T Consensus 44 -----~~~~~~~~~lvD~PGH~rlr~~~~~~~------~~~~~~k~IIfvvDSs~~~~~~~~~Ae~--Ly~iL~~~~~~~ 110 (181)
T PF09439_consen 44 -----NNSKGKKLRLVDIPGHPRLRSKLLDEL------KYLSNAKGIIFVVDSSTDQKELRDVAEY--LYDILSDTEVQK 110 (181)
T ss_dssp -----SSTCGTCECEEEETT-HCCCHHHHHHH------HHHGGEEEEEEEEETTTHHHHHHHHHHH--HHHHHHHHHCCT
T ss_pred -----ecCCCCEEEEEECCCcHHHHHHHHHhh------hchhhCCEEEEEEeCccchhhHHHHHHH--HHHHHHhhhhcc
Confidence 0022356779999995443 3333321 1233578999999998765544432111 1111211
Q ss_pred HhhcCEEEEeCCCCCCcCC
Q 025133 185 IAFADVVILNKVDLVSPER 203 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~ 203 (257)
-..|.+|+.||.|+.....
T Consensus 111 ~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 111 NKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp T--EEEEEEE-TTSTT---
T ss_pred CCCCEEEEEeCccccccCC
Confidence 2346788899999987654
No 195
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.98 E-value=3.7e-09 Score=85.93 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH--HH-hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH--QI-AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~--ql-~~~~vivlNK~D 197 (257)
..+.+.||+|..........+ ...++.+|+|+|++....... ... .+...+. ++ ..|.+++.||+|
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~--------~~~a~~iI~V~D~s~~~s~~~-~~~--~l~~~l~~~~~~~~piilv~NK~D 129 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRDRVVE-ARD--ELHRMLNEDELRDAVLLVFANKQD 129 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHH--------hccCCEEEEEEeCCcHHHHHH-HHH--HHHHHhcCHhhCCCCEEEEEECCC
Confidence 457799999974433332211 234689999999986433211 100 0111111 11 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhC--CCC-EEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEIN--SLA-HVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~--~~a-~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+..... .+++...+.-.+ +.. .++ .|++++.|+.+++..+.
T Consensus 130 l~~~~~----~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 130 LPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CCCCCC----HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 876543 455555553211 111 233 58999999999887653
No 196
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.98 E-value=8.7e-09 Score=86.47 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=60.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||+|.. ....... +. ...+.+++|+|+........ .. .+...+.+. ..|.++|.||+
T Consensus 50 ~~l~i~Dt~G~~---~~~~~~~----~~--~~ad~iilV~d~td~~S~~~-~~---~~~~~l~~~~~~~~~piilV~NK~ 116 (221)
T cd04148 50 STLVVIDHWEQE---MWTEDSC----MQ--YQGDAFVVVYSVTDRSSFER-AS---ELRIQLRRNRQLEDRPIILVGNKS 116 (221)
T ss_pred EEEEEEeCCCcc---hHHHhHH----hh--cCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCCCEEEEEECh
Confidence 457799999986 1111110 00 15789999999987543211 10 011222222 35779999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+....+.. .+...+ +....+ ++++ .|++.+.|+++++..+.
T Consensus 117 Dl~~~~~v~--~~~~~~-~a~~~~-~~~~e~SA~~~~gv~~l~~~l~ 159 (221)
T cd04148 117 DLARSREVS--VQEGRA-CAVVFD-CKFIETSAGLQHNVDELLEGIV 159 (221)
T ss_pred hccccceec--HHHHHH-HHHHcC-CeEEEecCCCCCCHHHHHHHHH
Confidence 997654321 222223 222223 3444 79999999998887764
No 197
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.98 E-value=2.6e-09 Score=88.99 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=59.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.+.||+|.......... .....+.+++|+|..+.... +... .+...+.+. ..+.++|.||+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~Sf-~~l~---~~~~~i~~~~~~~~~~iilvgNK~ 119 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRS--------YYRNSVGVLLVFDITNRESF-EHVH---DWLEEARSHIQPHRPVFILVGHKC 119 (211)
T ss_pred EEEEEEeCCcchhHHHHHHH--------HhcCCcEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCCeEEEEEEcc
Confidence 34679999996543332211 12346889999999875432 1110 011111121 12346778999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+....+. ..+......+.. + ..++ .|++.+.++++++..+.
T Consensus 120 Dl~~~~~v--~~~~~~~~~~~~-~-~~~~e~Sak~g~~v~e~f~~l~ 162 (211)
T cd04111 120 DLESQRQV--TREEAEKLAKDL-G-MKYIETSARTGDNVEEAFELLT 162 (211)
T ss_pred cccccccc--CHHHHHHHHHHh-C-CEEEEEeCCCCCCHHHHHHHHH
Confidence 99765432 123333433333 3 4455 78999999998887664
No 198
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.98 E-value=7e-09 Score=83.33 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=60.8
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV 199 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~ 199 (257)
.+.++||||.......... ....++.+++|+|..+......... .+...+.+. ..|.+++.||+|+.
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~--------~~~~a~~~i~v~d~~~~~sf~~~~~---~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPL--------CYPDTDVFLLCFSVVNPSSFQNISE---KWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEEEECCCChhhcccccc--------ccCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeeChhhc
Confidence 4679999997443222111 1235789999999886543211100 011122221 24678899999987
Q ss_pred CcC----------CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPE----------RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
... +..-..++...+.++.+. ..++ .|++++.|+++++...
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGA-CEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred cChhHHHHHhhcCCCCcCHHHHHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHH
Confidence 532 111112334444444433 2455 7999999999998754
No 199
>PRK00007 elongation factor G; Reviewed
Probab=98.98 E-value=1.1e-09 Score=106.28 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=48.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.||||||..+... + .......+|.+++|+|+..+....+.. ........+.+.++++||+|+
T Consensus 73 ~~~~~~liDTPG~~~f~~--e------v~~al~~~D~~vlVvda~~g~~~qt~~-----~~~~~~~~~~p~iv~vNK~D~ 139 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTI--E------VERSLRVLDGAVAVFDAVGGVEPQSET-----VWRQADKYKVPRIAFVNKMDR 139 (693)
T ss_pred CCeEEEEEeCCCcHHHHH--H------HHHHHHHcCEEEEEEECCCCcchhhHH-----HHHHHHHcCCCEEEEEECCCC
Confidence 456799999999654221 1 122344568999999998775543321 333445566788999999999
Q ss_pred CCcC
Q 025133 199 VSPE 202 (257)
Q Consensus 199 ~~~~ 202 (257)
.+.+
T Consensus 140 ~~~~ 143 (693)
T PRK00007 140 TGAD 143 (693)
T ss_pred CCCC
Confidence 8754
No 200
>PRK10867 signal recognition particle protein; Provisional
Probab=98.97 E-value=9.3e-09 Score=94.02 Aligned_cols=152 Identities=21% Similarity=0.238 Sum_probs=83.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchh
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~-~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
+..+++++|++|+||||++.+|... .. |++++++..|... .....++... ...++.+ .....+ .....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R-~aa~eQL~~~a~~~gv~v---~~~~~~----~dp~~ 170 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR-PAAIEQLKTLGEQIGVPV---FPSGDG----QDPVD 170 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc-hHHHHHHHHHHhhcCCeE---EecCCC----CCHHH
Confidence 3458999999999999999999763 34 8899999999654 2211111110 0111111 110000 11122
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
+.....+.. +..++|+|||||+|-.. .......+. .+......+.+++|+|+.......+. ...+..-
T Consensus 171 i~~~a~~~a-~~~~~DvVIIDTaGrl~~d~~lm~eL~---~i~~~v~p~evllVlda~~gq~av~~-------a~~F~~~ 239 (433)
T PRK10867 171 IAKAALEEA-KENGYDVVIVDTAGRLHIDEELMDELK---AIKAAVNPDEILLVVDAMTGQDAVNT-------AKAFNEA 239 (433)
T ss_pred HHHHHHHHH-HhcCCCEEEEeCCCCcccCHHHHHHHH---HHHHhhCCCeEEEEEecccHHHHHHH-------HHHHHhh
Confidence 322221222 24579999999999543 334433221 12233455678999999765443221 1122211
Q ss_pred hhcCEEEEeCCCCCCc
Q 025133 186 AFADVVILNKVDLVSP 201 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~ 201 (257)
-..+-+|+||.|....
T Consensus 240 ~~i~giIlTKlD~~~r 255 (433)
T PRK10867 240 LGLTGVILTKLDGDAR 255 (433)
T ss_pred CCCCEEEEeCccCccc
Confidence 1246789999996543
No 201
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.97 E-value=8.4e-09 Score=85.43 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=63.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|......+.... ...++.+++|+|..+...... .. .+...+.+. ..+.++|.||+|
T Consensus 49 v~l~iwDtaGqe~~~~l~~~y--------~~~ad~iIlVfDvtd~~Sf~~-l~---~w~~~i~~~~~~~~piilVgNK~D 116 (202)
T cd04120 49 IRLQIWDTAGQERFNSITSAY--------YRSAKGIILVYDITKKETFDD-LP---KWMKMIDKYASEDAELLLVGNKLD 116 (202)
T ss_pred EEEEEEeCCCchhhHHHHHHH--------hcCCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhCCCCCcEEEEEECcc
Confidence 456799999976544433221 235789999999987543221 11 122233332 245688899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+....+.. .....++.++. ....++ .|++++.|+++++....
T Consensus 117 L~~~~~v~--~~~~~~~a~~~-~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 117 CETDREIS--RQQGEKFAQQI-TGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred cccccccC--HHHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHH
Confidence 97644321 22223333332 224455 79999999998886654
No 202
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.97 E-value=3.6e-09 Score=84.48 Aligned_cols=106 Identities=21% Similarity=0.140 Sum_probs=57.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-HhhcCEEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-IAFADVVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-l~~~~vivlNK~D~ 198 (257)
+..+.+.||+|......+... ....++.+++|+|+...... ...... +...... -..|.++|.||+|+
T Consensus 43 ~~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~ii~V~D~t~~~s~-~~~~~~--l~~~~~~~~~~piilv~NK~Dl 111 (164)
T cd04162 43 DAIMELLEIGGSQNLRKYWKR--------YLSGSQGLIFVVDSADSERL-PLARQE--LHQLLQHPPDLPLVVLANKQDL 111 (164)
T ss_pred CeEEEEEECCCCcchhHHHHH--------HHhhCCEEEEEEECCCHHHH-HHHHHH--HHHHHhCCCCCcEEEEEeCcCC
Confidence 456789999997654433321 12357899999999875421 111000 1111111 13467889999998
Q ss_pred CCcCCCcchHHHHHHHH--HHhCC--CCEEE-EeecC------CcChhhhhcC
Q 025133 199 VSPERSGDSLDELEKEI--HEINS--LAHVI-RSVRC------QVDLSEVLNC 240 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l--~~~~~--~a~i~-~s~~~------~~~~~~l~~~ 240 (257)
..... ...+...+ ..+.. ...++ .|++. +.++.++++.
T Consensus 112 ~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~ 160 (164)
T cd04162 112 PAARS----VQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred cCCCC----HHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence 76543 34333322 22211 22344 56666 7777777654
No 203
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.97 E-value=5.5e-09 Score=83.11 Aligned_cols=104 Identities=19% Similarity=0.171 Sum_probs=58.9
Q ss_pred CEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 122 DHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 122 ~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
.+-++||||.... ...... .....+.+++++|+...... +.... +...+.+. ..|.++|.||
T Consensus 48 ~~~i~D~~g~~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~---~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 48 SLEILDTAGQQQADTEQLER--------SIRWADGFVLVYSITDRSSF-DEISQ---LKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEEECCCCcccccchHHH--------HHHhCCEEEEEEECCCHHHH-HHHHH---HHHHHHHHhcCCCCCCEEEEEEC
Confidence 4669999997631 111111 12346899999999876432 21110 12222222 4567889999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCC-cChhhhhcCc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQ-VDLSEVLNCR 241 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~-~~~~~l~~~~ 241 (257)
+|+...... ..+...+..+..+ .+++ .|++.+ .++++++...
T Consensus 116 ~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 116 ADLLHYRQV--STEEGEKLASELG--CLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred CchHHhCcc--CHHHHHHHHHHcC--CEEEEeCCCCCchhHHHHHHHH
Confidence 998654322 1233334333333 4555 688887 4899888654
No 204
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.97 E-value=5.5e-09 Score=85.15 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=59.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+.+.||+|.......... ....++.+++|+|..+.... ..... +...+.+.. .+.+++.||+|
T Consensus 49 ~~~~i~Dt~g~~~~~~~~~~--------~~~~~d~iilv~d~~~~~s~-~~i~~---~~~~i~~~~~~~~~~ivv~nK~D 116 (188)
T cd04125 49 IKLQIWDTNGQERFRSLNNS--------YYRGAHGYLLVYDVTDQESF-ENLKF---WINEINRYARENVIKVIVANKSD 116 (188)
T ss_pred EEEEEEECCCcHHHHhhHHH--------HccCCCEEEEEEECcCHHHH-HHHHH---HHHHHHHhCCCCCeEEEEEECCC
Confidence 34668999996433322221 12357899999999865432 22111 222222221 35688899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..... ........+.. ..+++ .|++++.++++++...
T Consensus 117 l~~~~~v~--~~~~~~~~~~~--~~~~~evSa~~~~~i~~~f~~l 157 (188)
T cd04125 117 LVNNKVVD--SNIAKSFCDSL--NIPFFETSAKQSINVEEAFILL 157 (188)
T ss_pred CcccccCC--HHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence 88544321 12223333322 23455 7899999998877665
No 205
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.96 E-value=1.4e-08 Score=87.72 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=44.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.|+||||..+...... .....+|.+++|+|+.......... +.......+.|.++++||+|+
T Consensus 69 ~~~~i~liDTPG~~df~~~~~--------~~l~~aD~~IlVvda~~g~~~~~~~-----i~~~~~~~~~P~iivvNK~D~ 135 (267)
T cd04169 69 RDCVINLLDTPGHEDFSEDTY--------RTLTAVDSAVMVIDAAKGVEPQTRK-----LFEVCRLRGIPIITFINKLDR 135 (267)
T ss_pred CCEEEEEEECCCchHHHHHHH--------HHHHHCCEEEEEEECCCCccHHHHH-----HHHHHHhcCCCEEEEEECCcc
Confidence 457789999999764332111 1223579999999998653321110 122333445788999999998
Q ss_pred CCcC
Q 025133 199 VSPE 202 (257)
Q Consensus 199 ~~~~ 202 (257)
....
T Consensus 136 ~~a~ 139 (267)
T cd04169 136 EGRD 139 (267)
T ss_pred CCCC
Confidence 7653
No 206
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.96 E-value=2.8e-09 Score=84.50 Aligned_cols=104 Identities=19% Similarity=0.142 Sum_probs=59.2
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~D 197 (257)
.+.|.||||......+.... ....+.+++|+|........+ .. .+...+.+ ...|.++|.||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~--------~~~ad~~i~v~d~~~~~s~~~-~~---~~~~~~~~~~~~~~~piviv~nK~D 117 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLY--------IKNGQGFIVVYSLVNQQTFQD-IK---PMRDQIVRVKGYEKVPIILVGNKVD 117 (163)
T ss_pred EEEEEECCCcccccchHHHH--------HhhCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCCCEEEEEECcc
Confidence 35689999965443333221 234688999999876543211 10 01122222 2357789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...... .........+.. . .+++ .|++.+.++.+++...
T Consensus 118 l~~~~~~--~~~~~~~~~~~~-~-~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 118 LESEREV--SSAEGRALAEEW-G-CPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred chhcCcc--CHHHHHHHHHHh-C-CEEEEecCCCCCCHHHHHHHH
Confidence 8764332 122222322222 2 3444 7899999999888654
No 207
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.96 E-value=3.2e-09 Score=85.47 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.|+||+|......+.... ....+.+++|+|........... .+...+.+. ..|.++|.||+
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~--------~~~~d~~ilv~d~~~~~Sf~~~~----~~~~~i~~~~~~~~~piilvgNK~ 117 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQY--------MRCGEGFIICYSVTDRHSFQEAS----EFKKLITRVRLTEDIPLVLVGNKV 117 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHH--------hhcCCEEEEEEECCchhHHHHHH----HHHHHHHHhcCCCCCCEEEEEECh
Confidence 346789999976554443321 22468899999987654322110 012223332 24678999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+..+. ..++.....+.. .++++ .|++.+.++++++....
T Consensus 118 Dl~~~~~v--~~~~~~~~a~~~--~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 118 DLESQRQV--TTEEGRNLAREF--NCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred hhhhcCcc--CHHHHHHHHHHh--CCEEEEEecCCCCCHHHHHHHHH
Confidence 98765432 122333333333 34665 78999999999887653
No 208
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.96 E-value=1.1e-08 Score=81.92 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=57.9
Q ss_pred CCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK 195 (257)
..+.++||+|..... .+.+. . ...++.+++|+|+.......... .+...+.+. ..|.++|.||
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~-----~---~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~iiv~nK 118 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQH-----Y---YRNVHAVVFVYDVTNMASFHSLP----SWIEECEQHSLPNEVPRILVGNK 118 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHH-----h---hcCCCEEEEEEECCCHHHHHhHH----HHHHHHHHhcCCCCCCEEEEEEC
Confidence 457799999964322 11111 1 23568899999998654322110 012122221 2577999999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecC---CcChhhhhcCc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRC---QVDLSEVLNCR 241 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~---~~~~~~l~~~~ 241 (257)
+|+....+.. .+......+.. ..+++ .|++. +.++++++...
T Consensus 119 ~Dl~~~~~~~--~~~~~~~~~~~--~~~~~e~Sa~~~~~~~~i~~~f~~l 164 (170)
T cd04115 119 CDLREQIQVP--TDLAQRFADAH--SMPLFETSAKDPSENDHVEAIFMTL 164 (170)
T ss_pred ccchhhcCCC--HHHHHHHHHHc--CCcEEEEeccCCcCCCCHHHHHHHH
Confidence 9987654421 12222323322 24455 67887 77888777543
No 209
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.95 E-value=2.1e-08 Score=89.94 Aligned_cols=167 Identities=20% Similarity=0.181 Sum_probs=92.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~---~~~-~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+++++|++|+||||++.+|... ..| .+++++..|... .+....+...+ ..++.+ .. .....++
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R-~ga~EqL~~~a~~~gv~~---~~-------~~~~~~l 206 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR-IGGHEQLRIFGKILGVPV---HA-------VKDGGDL 206 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc-ccHHHHHHHHHHHcCCce---Ee-------cCCcccH
Confidence 48999999999999999999763 334 689999887643 22221211110 001111 00 1122344
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+.+ ..+.++|||||+|...... +.+.+. .+.........++|+++......+... ...+....
T Consensus 207 ~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La---~L~~~~~~~~~lLVLsAts~~~~l~ev------i~~f~~~~ 273 (374)
T PRK14722 207 QLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIA---MLHGADTPVQRLLLLNATSHGDTLNEV------VQAYRSAA 273 (374)
T ss_pred HHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHH---HHhccCCCCeEEEEecCccChHHHHHH------HHHHHHhh
Confidence 444443 3468999999999775433 223221 122222334568899998876654432 12222221
Q ss_pred --------hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCC
Q 025133 187 --------FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ 231 (257)
Q Consensus 187 --------~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~ 231 (257)
..+-+|++|.|.... +..+...+.... .++...+.++
T Consensus 274 ~~p~~~~~~~~~~I~TKlDEt~~------~G~~l~~~~~~~--lPi~yvt~Gq 318 (374)
T PRK14722 274 GQPKAALPDLAGCILTKLDEASN------LGGVLDTVIRYK--LPVHYVSTGQ 318 (374)
T ss_pred cccccccCCCCEEEEeccccCCC------ccHHHHHHHHHC--cCeEEEecCC
Confidence 246889999997764 344444444332 2344444443
No 210
>PRK12739 elongation factor G; Reviewed
Probab=98.95 E-value=2e-09 Score=104.51 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=74.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~-~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.++.-++|+|.+|+|||||+++|+.... ..+++.+. .|. ...|..-... .-+..+. .....+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~--~~~-~~~D~~~~E~-~rgiti~------~~~~~~------- 68 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVH--DGA-ATMDWMEQEQ-ERGITIT------SAATTC------- 68 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCcccccccc--CCc-cccCCChhHh-hcCCCcc------ceeEEE-------
Confidence 3566799999999999999999985311 11111111 111 1111110000 0011110 000000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
...+..+.|+||||..+... + .......+|.+++|+|+.......+.. +.......+.+
T Consensus 69 --------~~~~~~i~liDTPG~~~f~~--e------~~~al~~~D~~ilVvDa~~g~~~qt~~-----i~~~~~~~~~p 127 (691)
T PRK12739 69 --------FWKGHRINIIDTPGHVDFTI--E------VERSLRVLDGAVAVFDAVSGVEPQSET-----VWRQADKYGVP 127 (691)
T ss_pred --------EECCEEEEEEcCCCHHHHHH--H------HHHHHHHhCeEEEEEeCCCCCCHHHHH-----HHHHHHHcCCC
Confidence 03457799999999754211 1 122344579999999998765443321 23334445678
Q ss_pred CEEEEeCCCCCCcC
Q 025133 189 DVVILNKVDLVSPE 202 (257)
Q Consensus 189 ~vivlNK~D~~~~~ 202 (257)
.++++||+|+...+
T Consensus 128 ~iv~iNK~D~~~~~ 141 (691)
T PRK12739 128 RIVFVNKMDRIGAD 141 (691)
T ss_pred EEEEEECCCCCCCC
Confidence 89999999999754
No 211
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.94 E-value=2.9e-09 Score=85.31 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=59.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV 199 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~ 199 (257)
.+.++||||.......... .....+.+++|+|............ .+...+.+. ..|.++|.||+|+.
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~ilv~~~~~~~s~~~~~~---~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPL--------SYPMTDVFLICFSVVNPASFQNVKE---EWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEEeCCCcccccccccc--------cCCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeEchhhh
Confidence 3568999996543222111 1234578899999876543211100 012222222 35678889999986
Q ss_pred CcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.... .-..+......++.+. ..++ .|++++.|+++++...
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 118 DDPKTLARLNDMKEKPVTVEQGQKLAKEIGA-HCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred cChhhHHHHhhccCCCCCHHHHHHHHHHcCC-CEEEEecCCcCCCHHHHHHHH
Confidence 54211 0112333444444432 3455 7999999999998654
No 212
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.94 E-value=2.6e-09 Score=102.85 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=59.2
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh-cCEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D 197 (257)
.+..++||||||..+ +... .......+|.+++|+|+..+....... .......++. +.++++||+|
T Consensus 102 ~~~~~~liDtPG~~~---f~~~-----~~~~~~~aD~~llVvda~~g~~~~t~e-----~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHEQ---YTRN-----MVTGASTADLAIILVDARKGVLTQTRR-----HSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChHH---HHHH-----HHHHHHhCCEEEEEEECCCCccccCHH-----HHHHHHHhCCCeEEEEEEecc
Confidence 456789999999532 2211 112345789999999997654322110 1223344443 3567899999
Q ss_pred CCCcCC--CcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhh
Q 025133 198 LVSPER--SGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSE 236 (257)
Q Consensus 198 ~~~~~~--~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~ 236 (257)
+++.++ ..+...++...+++.. ...+++ +|++++.|+.+
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 985322 1111223333334432 223344 89999988864
No 213
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.94 E-value=1.4e-08 Score=88.40 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=87.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+.-+++|+|.+|+||||.|.+|... ..|+++.+...|.-+.-.++.-.++-...++.+ +....|.- ...-..
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v---I~~~~G~D---pAaVaf 211 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV---ISGKEGAD---PAAVAF 211 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE---EccCCCCC---cHHHHH
Confidence 4558999999999999999999874 669999999888432111111111100011111 00001110 011223
Q ss_pred HHHHHHHHhcCCCCEEEEecCC-CCCcHHHHHhcc-cccccccc--eeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 109 QALEQLVQRKERLDHILLETTG-LANPAPLASVLW-LDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G-~~~~~~~~~~~~-~~~~~~~~--~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
.+++.- +..++|++||||.| ++....+++.+. +.+..... ...+-++.++||..+.+.+.. ...+..
T Consensus 212 DAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q-------Ak~F~e 282 (340)
T COG0552 212 DAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ-------AKIFNE 282 (340)
T ss_pred HHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH-------HHHHHH
Confidence 333332 25689999999999 776766665442 11111111 112237777899998876542 233444
Q ss_pred HhhcCEEEEeCCCCCC
Q 025133 185 IAFADVVILNKVDLVS 200 (257)
Q Consensus 185 l~~~~vivlNK~D~~~ 200 (257)
.-.-+-++++|.|-..
T Consensus 283 av~l~GiIlTKlDgtA 298 (340)
T COG0552 283 AVGLDGIILTKLDGTA 298 (340)
T ss_pred hcCCceEEEEecccCC
Confidence 4445899999999543
No 214
>PLN03110 Rab GTPase; Provisional
Probab=98.93 E-value=8.3e-09 Score=86.28 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=60.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|.||+|......+.... ....+.+++|+|....... .... .+...+.+. ..+.++|.||+|
T Consensus 61 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~-~~~~---~~~~~~~~~~~~~~piiiv~nK~D 128 (216)
T PLN03110 61 VKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDITKRQTF-DNVQ---RWLRELRDHADSNIVIMMAGNKSD 128 (216)
T ss_pred EEEEEEECCCcHHHHHHHHHH--------hCCCCEEEEEEECCChHHH-HHHH---HHHHHHHHhCCCCCeEEEEEEChh
Confidence 346789999965443333211 2246889999998754332 1110 022222332 246688899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+....+.. .+.. ..+.... ..+++ .|++.+.++++++..+.
T Consensus 129 l~~~~~~~--~~~~-~~l~~~~-~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 129 LNHLRSVA--EEDG-QALAEKE-GLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred cccccCCC--HHHH-HHHHHHc-CCEEEEEeCCCCCCHHHHHHHHH
Confidence 87544321 1222 2233333 34555 79999999988887663
No 215
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.92 E-value=2.4e-09 Score=89.32 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=52.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
...+.++||||..+...... .....+|.+++|+|+.......... +.........|.++|+||+|++
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~--------~~~~~aD~~llVvD~~~~~~~~~~~-----~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVA--------AALRLSDGVVLVVDVVEGVTSNTER-----LIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchHHHHH--------HHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECcccC
Confidence 35688999999875433221 1234679999999998654322110 1112223347899999999987
Q ss_pred CcCCC---cchHHHHHHHHHHhCCCC
Q 025133 200 SPERS---GDSLDELEKEIHEINSLA 222 (257)
Q Consensus 200 ~~~~~---~~~l~~~~~~l~~~~~~a 222 (257)
..+.. .+.++.+.+.++++|+.+
T Consensus 137 ~~~~~l~~~~~~~~l~~~i~~~n~~~ 162 (213)
T cd04167 137 ILELKLPPNDAYFKLRHIIDEVNNII 162 (213)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHH
Confidence 32110 122455555666655544
No 216
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.92 E-value=1.5e-08 Score=90.90 Aligned_cols=166 Identities=21% Similarity=0.266 Sum_probs=97.6
Q ss_pred ccccccccCcc--cCCCcc-eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccch-hhhhcCCCCcee
Q 025133 15 DETTHEFSNSH--ENDDVS-VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVER-AMINEGEGGALV 88 (257)
Q Consensus 15 ~~~~~~~~~~~--~~~~~~-~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~-~~~~~~~~~~~~ 88 (257)
++|+..+++.. .....+ .-+|.++|.-||||||++.+|..+ .+++++.++..|.-.-.-++. ..+... .++.+
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q-~~v~~ 158 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ-VGVPF 158 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHH-cCCce
Confidence 56777677422 222233 347899999999999999999774 579999999998543111111 001110 11111
Q ss_pred eeeeecCCCceeeccchhH-HHHHHHHHHhcCCCCEEEEecCC-CCCcHHHHHhcccccccccceeeeeEEEEEeccchH
Q 025133 89 EEWVELANGCICCTVKHSL-VQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 166 (257)
Q Consensus 89 ~~~~~l~~gcicc~~~~~~-~~~l~~~~~~~~~~~~ilIDt~G-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~ 166 (257)
.....+ .-+-++ ...+... +...+|++||||.| +.....+++.+. .++...+.+-+++|+|+..+.
T Consensus 159 ---f~~~~~----~~Pv~Iak~al~~a--k~~~~DvvIvDTAGRl~ide~Lm~El~---~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 159 ---FGSGTE----KDPVEIAKAALEKA--KEEGYDVVIVDTAGRLHIDEELMDELK---EIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred ---ecCCCC----CCHHHHHHHHHHHH--HHcCCCEEEEeCCCcccccHHHHHHHH---HHHhhcCCCeEEEEEecccch
Confidence 000000 001112 2223222 24578999999999 544556655442 345667889999999999988
Q ss_pred HHHhhhccCCChhHHH-HHHhhcCEEEEeCCCCCCc
Q 025133 167 FQIDKYRHLSSYPEAI-HQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~ql~~~~vivlNK~D~~~~ 201 (257)
..... ...| .++. -.-+|++|.|....
T Consensus 227 dA~~~-------A~aF~e~l~-itGvIlTKlDGdaR 254 (451)
T COG0541 227 DAVNT-------AKAFNEALG-ITGVILTKLDGDAR 254 (451)
T ss_pred HHHHH-------HHHHhhhcC-CceEEEEcccCCCc
Confidence 76442 2222 2232 35679999997654
No 217
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.92 E-value=7.4e-09 Score=100.59 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=73.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCC-CeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~-~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
++.-++|+|.+|+|||||+++|+..... .++. ..+.|+ ...|...... .-+..+. .....+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~--~~~~g~-~~~D~~~~e~-~rgiti~----~~~~~~---------- 70 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIG--EVHDGA-ATMDWMEQEK-ERGITIT----SAATTV---------- 70 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccc--cccCCc-cccCCCHHHH-hcCCCEe----cceEEE----------
Confidence 4668999999999999999999853110 0111 111221 1112111000 0011110 000000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
...+..+.|+||||..+...... .....+|.+++|+|+.......+.. ........+.+.
T Consensus 71 -------~~~~~~i~liDTPG~~~~~~~~~--------~~l~~~D~~ilVvda~~g~~~~~~~-----~~~~~~~~~~p~ 130 (689)
T TIGR00484 71 -------FWKGHRINIIDTPGHVDFTVEVE--------RSLRVLDGAVAVLDAVGGVQPQSET-----VWRQANRYEVPR 130 (689)
T ss_pred -------EECCeEEEEEECCCCcchhHHHH--------HHHHHhCEEEEEEeCCCCCChhHHH-----HHHHHHHcCCCE
Confidence 03457789999999876433211 1234569999999998754432211 222334456788
Q ss_pred EEEEeCCCCCCcC
Q 025133 190 VVILNKVDLVSPE 202 (257)
Q Consensus 190 vivlNK~D~~~~~ 202 (257)
++++||+|+...+
T Consensus 131 ivviNK~D~~~~~ 143 (689)
T TIGR00484 131 IAFVNKMDKTGAN 143 (689)
T ss_pred EEEEECCCCCCCC
Confidence 9999999998754
No 218
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.91 E-value=1.3e-08 Score=83.34 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=70.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|......+.... ...++.+++|+|.......... . .+...+.+. ..|.++|-||+|+
T Consensus 55 ~~l~iwDt~G~~~~~~l~~~~--------~~~ad~illVfD~t~~~Sf~~~-~---~w~~~i~~~~~~~piilVGNK~DL 122 (189)
T cd04121 55 VKLQLWDTSGQGRFCTIFRSY--------SRGAQGIILVYDITNRWSFDGI-D---RWIKEIDEHAPGVPKILVGNRLHL 122 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHH--------hcCCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhCCCCCEEEEEECccc
Confidence 446789999986554443321 2357899999999865432221 1 011122211 2466888899999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC-------CCCCCcccccc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD-------ATVNPIKLCSE 255 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~ 255 (257)
....+. ..++.+.+.+..+ ..++ .|++++.++++++..+.-. ++..|.+-||.
T Consensus 123 ~~~~~v--~~~~~~~~a~~~~--~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~~~~~~~~~~~~ 183 (189)
T cd04121 123 AFKRQV--ATEQAQAYAERNG--MTFFEVSPLCNFNITESFTELARIVLMRHGRPPQSPPQNCSR 183 (189)
T ss_pred hhccCC--CHHHHHHHHHHcC--CEEEEecCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccccC
Confidence 754332 2445555555443 3455 7999999999887766322 33455566654
No 219
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.91 E-value=1.5e-09 Score=86.65 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=37.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~ 196 (257)
...+.||||||+........... .. .....|.+++|+++.+.....+... +...........++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~-~~---~~~~~d~vi~V~~~~~~~~~~~~~~----l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEIT-EE---YLPKADVVIFVVDANQDLTESDMEF----LKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHH-HH---HHSTTEEEEEEEETTSTGGGHHHHH----HHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHH-HH---hhccCCEEEEEeccCcccchHHHHH----HHHHhcCCCCeEEEEEcCC
Confidence 56789999999865322111110 11 1245789999999998554322110 1222233334467788884
No 220
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.91 E-value=2.2e-08 Score=91.56 Aligned_cols=149 Identities=21% Similarity=0.297 Sum_probs=83.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.-+++++|++|+||||++.+|... ..|++++++..|... .....++-..+ ..++.+ .....+ ....++
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R-~~a~~QL~~~a~~~gvp~---~~~~~~----~~P~~i 170 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR-PAAIEQLKVLGQQVGVPV---FALGKG----QSPVEI 170 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc-hHHHHHHHHHHHhcCCce---EecCCC----CCHHHH
Confidence 448999999999999999999764 358899999999654 21111111110 011111 110000 011122
Q ss_pred H-HHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH-H
Q 025133 108 V-QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-Q 184 (257)
Q Consensus 108 ~-~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-q 184 (257)
. ..+... ...++|+|||||+|... .......+. .+......+.+++|+|+......... ...+. .
T Consensus 171 ~~~al~~~--~~~~~DvVIIDTaGr~~~d~~l~~eL~---~i~~~~~p~e~lLVvda~tgq~~~~~-------a~~f~~~ 238 (428)
T TIGR00959 171 ARRALEYA--KENGFDVVIVDTAGRLQIDEELMEELA---AIKEILNPDEILLVVDAMTGQDAVNT-------AKTFNER 238 (428)
T ss_pred HHHHHHHH--HhcCCCEEEEeCCCccccCHHHHHHHH---HHHHhhCCceEEEEEeccchHHHHHH-------HHHHHhh
Confidence 2 222222 14578999999999543 333333221 22334456788999999865443321 12222 2
Q ss_pred HhhcCEEEEeCCCCCCc
Q 025133 185 IAFADVVILNKVDLVSP 201 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~ 201 (257)
+ ..+-+|+||.|....
T Consensus 239 v-~i~giIlTKlD~~~~ 254 (428)
T TIGR00959 239 L-GLTGVVLTKLDGDAR 254 (428)
T ss_pred C-CCCEEEEeCccCccc
Confidence 3 346889999996543
No 221
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.90 E-value=3.1e-08 Score=95.60 Aligned_cols=145 Identities=20% Similarity=0.198 Sum_probs=85.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~---~~~-~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+++|+|+.|+||||++.+|... ..| ++++++..|... ++.-..+.... ..++.+ ..+....++
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R-igA~eQL~~~a~~~gvpv----------~~~~~~~~l 254 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR-IGALEQLRIYGRILGVPV----------HAVKDAADL 254 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc-hHHHHHHHHHHHhCCCCc----------cccCCHHHH
Confidence 59999999999999999999863 334 589999988654 33222222110 011100 111223445
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+.+ ..++|+|||||+|..+ ...+.+.+. .+........+++|+|+......+... ...+....
T Consensus 255 ~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~---~l~~~~~p~e~~LVLsAt~~~~~l~~i------~~~f~~~~ 321 (767)
T PRK14723 255 RFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIA---MLCGVGRPVRRLLLLNAASHGDTLNEV------VHAYRHGA 321 (767)
T ss_pred HHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHH---HHhccCCCCeEEEEECCCCcHHHHHHH------HHHHhhcc
Confidence 555543 3467999999999654 333443332 112223345689999998655443321 22222221
Q ss_pred --hcCEEEEeCCCCCCc
Q 025133 187 --FADVVILNKVDLVSP 201 (257)
Q Consensus 187 --~~~vivlNK~D~~~~ 201 (257)
..+-+|++|.|....
T Consensus 322 ~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 322 GEDVDGCIITKLDEATH 338 (767)
T ss_pred cCCCCEEEEeccCCCCC
Confidence 367899999998764
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.90 E-value=5.3e-09 Score=95.24 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=58.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE-EEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v-ivlNK~D~ 198 (257)
+..+.|+||||..+ +.. ..+.....+|.+++|+|+.......... ....+.....+.+ +++||+|+
T Consensus 74 ~~~~~liDtpGh~~---f~~-----~~~~~~~~~D~~ilVvda~~g~~~qt~e-----~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 74 NRHYAHVDCPGHAD---YVK-----NMITGAAQMDGAILVVSATDGPMPQTRE-----HILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CEEEEEEECCchHH---HHH-----HHHHHHhhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEEEeccc
Confidence 45688999999643 221 1123345689999999998754332211 2233444566766 57999999
Q ss_pred CCcCCCcch-HHHHHHHHHHhCC---CCEEE-EeecCC
Q 025133 199 VSPERSGDS-LDELEKEIHEINS---LAHVI-RSVRCQ 231 (257)
Q Consensus 199 ~~~~~~~~~-l~~~~~~l~~~~~---~a~i~-~s~~~~ 231 (257)
.+.++..+. .++++..++.... ..+++ .|+.++
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 141 VDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccc
Confidence 875432111 2356666666532 14555 677654
No 223
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.90 E-value=8.4e-09 Score=90.99 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=36.0
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhc-CccCCCCCCCc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLN-CRAYDATVNPI 250 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~-~~~~~~~~~~~ 250 (257)
.|.++++||+|+.+.++ +...++...+...++ +|+..+.++++|.+ .+..-+++.|.
T Consensus 215 KPvI~VlNK~Dl~~~~~-------~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~ 273 (318)
T cd01899 215 KPMVIAANKADIPDAEN-------NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSD 273 (318)
T ss_pred CcEEEEEEHHHccChHH-------HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCC
Confidence 47889999999765432 122333333444455 89999999999987 35444444443
No 224
>PLN03126 Elongation factor Tu; Provisional
Probab=98.90 E-value=7.4e-09 Score=96.10 Aligned_cols=99 Identities=20% Similarity=0.158 Sum_probs=57.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+..+.||||||..+. ... ........|.+++|+|+.......... ........+.+. ++++||+|+
T Consensus 143 ~~~i~liDtPGh~~f---~~~-----~~~g~~~aD~ailVVda~~G~~~qt~e-----~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 143 NRHYAHVDCPGHADY---VKN-----MITGAAQMDGAILVVSGADGPMPQTKE-----HILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CcEEEEEECCCHHHH---HHH-----HHHHHhhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEecccc
Confidence 457889999996432 211 122334679999999998764432211 223334455674 568999999
Q ss_pred CCcCCCcchH-HHHHHHHHHhC---CCCEEE-EeecCC
Q 025133 199 VSPERSGDSL-DELEKEIHEIN---SLAHVI-RSVRCQ 231 (257)
Q Consensus 199 ~~~~~~~~~l-~~~~~~l~~~~---~~a~i~-~s~~~~ 231 (257)
.+.++..+.+ +++...++... ...+++ .|+..+
T Consensus 210 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g 247 (478)
T PLN03126 210 VDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLA 247 (478)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccc
Confidence 8754332222 35666666642 134554 666654
No 225
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.90 E-value=2.4e-08 Score=83.74 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=62.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
+.+.|+||+|......+...+ ....+.+|+|+|...-..... ... +...+.+. ..+.++|.||+|
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~--------~~~ad~~IlV~Dvt~~~Sf~~-l~~---~~~~l~~~~~~~~piIlVgNK~D 111 (220)
T cd04126 44 YNISIWDTAGREQFHGLGSMY--------CRGAAAVILTYDVSNVQSLEE-LED---RFLGLTDTANEDCLFAVVGNKLD 111 (220)
T ss_pred EEEEEEeCCCcccchhhHHHH--------hccCCEEEEEEECCCHHHHHH-HHH---HHHHHHHhcCCCCcEEEEEECcc
Confidence 457799999976554443322 235789999999986433211 100 11111121 235678899999
Q ss_pred CCCcC-----------------CCcchHHHHHHHHHHhCC------------CCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPE-----------------RSGDSLDELEKEIHEINS------------LAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~-----------------~~~~~l~~~~~~l~~~~~------------~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+.. ...-..++...+.++.+. +...+ .|++++.++++++....
T Consensus 112 L~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 112 LTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred cccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 97510 111123444454444431 13444 79999999998886653
No 226
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.89 E-value=5.1e-09 Score=84.67 Aligned_cols=151 Identities=21% Similarity=0.265 Sum_probs=84.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+.--+++.|+.||||||++++|... +..-...-.| .....+ .
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~----~~~~~~pT~g----~~~~~i-------------~----------------- 54 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNG----EISETIPTIG----FNIEEI-------------K----------------- 54 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSS----SEEEEEEESS----EEEEEE-------------E-----------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhc----cccccCcccc----ccccee-------------e-----------------
Confidence 4446799999999999999999842 2221111111 111000 0
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H-hh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l-~~ 187 (257)
..+..+.+.|.+|-....+..... ...++.+|||+|+..... +..... .+...+.+ + ..
T Consensus 55 -------~~~~~~~~~d~gG~~~~~~~w~~y--------~~~~~~iIfVvDssd~~~-l~e~~~--~L~~ll~~~~~~~~ 116 (175)
T PF00025_consen 55 -------YKGYSLTIWDLGGQESFRPLWKSY--------FQNADGIIFVVDSSDPER-LQEAKE--ELKELLNDPELKDI 116 (175)
T ss_dssp -------ETTEEEEEEEESSSGGGGGGGGGG--------HTTESEEEEEEETTGGGG-HHHHHH--HHHHHHTSGGGTTS
T ss_pred -------eCcEEEEEEeccccccccccceee--------ccccceeEEEEeccccee-eccccc--chhhhcchhhcccc
Confidence 124557799999964332222211 124789999999986432 111100 01112211 1 35
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHH--HhC--CCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIH--EIN--SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~--~~~--~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|.++++||.|+.+... .+++...+. .+. ....++ .|+.++.|+.+.++.+
T Consensus 117 piLIl~NK~D~~~~~~----~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL 171 (175)
T PF00025_consen 117 PILILANKQDLPDAMS----EEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWL 171 (175)
T ss_dssp EEEEEEESTTSTTSST----HHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred eEEEEeccccccCcch----hhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHH
Confidence 7788899999877543 455555443 232 222344 6899999998776543
No 227
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.89 E-value=6e-08 Score=87.61 Aligned_cols=165 Identities=21% Similarity=0.246 Sum_probs=95.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc------CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeecc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG------KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTV 103 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~------~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~ 103 (257)
...+++++|+.|+||||++.+|... ..+++++++..|+.. .+....+..... .++.+ .+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R-~aa~eQL~~~a~~lgvpv----------~~~~~ 241 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR-IGAKKQIQTYGDIMGIPV----------KAIES 241 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc-HHHHHHHHHHhhcCCcce----------EeeCc
Confidence 3468999999999999999999753 247899999999754 332222222111 11111 11122
Q ss_pred chhHHHHHHHHHHhcCCCCEEEEecCCCCCcH--HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHH
Q 025133 104 KHSLVQALEQLVQRKERLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (257)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~--~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (257)
..++...+. ...++++|||||+|..... .+.+. ...+.....-..+++|+||......+. ..
T Consensus 242 ~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el---~~~l~~~~~~~e~~LVlsat~~~~~~~---------~~ 305 (388)
T PRK12723 242 FKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEM---KELLNACGRDAEFHLAVSSTTKTSDVK---------EI 305 (388)
T ss_pred HHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHH---HHHHHhcCCCCeEEEEEcCCCCHHHHH---------HH
Confidence 334443333 3457999999999965432 22221 112221111225889999998765533 34
Q ss_pred HHHHhh--cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecC
Q 025133 182 IHQIAF--ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 230 (257)
Q Consensus 182 ~~ql~~--~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~ 230 (257)
+.+... .+-++++|.|-... ...+...+...+ .++...+.|
T Consensus 306 ~~~~~~~~~~~~I~TKlDet~~------~G~~l~~~~~~~--~Pi~yit~G 348 (388)
T PRK12723 306 FHQFSPFSYKTVIFTKLDETTC------VGNLISLIYEMR--KEVSYVTDG 348 (388)
T ss_pred HHHhcCCCCCEEEEEeccCCCc------chHHHHHHHHHC--CCEEEEeCC
Confidence 444433 68999999998765 344445444432 344443444
No 228
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.89 E-value=7.9e-09 Score=94.41 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=59.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D 197 (257)
.+..+.|+||||..+ +.... ......+|.+++|+|+.......... .......++.+ .++++||+|
T Consensus 78 ~~~~~~liDtPGh~~---f~~~~-----~~~~~~aD~allVVda~~G~~~qt~~-----~~~~~~~~~~~~iivviNK~D 144 (406)
T TIGR02034 78 DKRKFIVADTPGHEQ---YTRNM-----ATGASTADLAVLLVDARKGVLEQTRR-----HSYIASLLGIRHVVLAVNKMD 144 (406)
T ss_pred CCeEEEEEeCCCHHH---HHHHH-----HHHHhhCCEEEEEEECCCCCccccHH-----HHHHHHHcCCCcEEEEEEecc
Confidence 345789999999532 22111 12345789999999998764432210 12233444444 456999999
Q ss_pred CCCcCCCcchHH----HHHHHHHHhCC-CCEEE-EeecCCcChhh
Q 025133 198 LVSPERSGDSLD----ELEKEIHEINS-LAHVI-RSVRCQVDLSE 236 (257)
Q Consensus 198 ~~~~~~~~~~l~----~~~~~l~~~~~-~a~i~-~s~~~~~~~~~ 236 (257)
+.+.++ ..++ .+...++.... ..+++ +|+.++.|+++
T Consensus 145 ~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 145 LVDYDE--EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cccchH--HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 986432 1233 33333343322 23454 89999988865
No 229
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.89 E-value=5.5e-08 Score=87.01 Aligned_cols=173 Identities=20% Similarity=0.254 Sum_probs=106.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCcee-eccch
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKH 105 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~----~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~~~~ 105 (257)
...+++++||.|+||||++.+|... ...+++++|+.|.-. +|...++-.++. +-+=.+| |....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-IGA~EQLk~Ya~----------im~vp~~vv~~~~ 270 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-IGAVEQLKTYAD----------IMGVPLEVVYSPK 270 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch-hhHHHHHHHHHH----------HhCCceEEecCHH
Confidence 3669999999999999999999753 346799999998654 555544433311 0011111 23566
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (257)
+|..++..+- +.|+|||||.|... +....+. ...+..... ..+.+|+++..-...+. +.+.
T Consensus 271 el~~ai~~l~----~~d~ILVDTaGrs~~D~~~i~el---~~~~~~~~~-i~~~Lvlsat~K~~dlk---------ei~~ 333 (407)
T COG1419 271 ELAEAIEALR----DCDVILVDTAGRSQYDKEKIEEL---KELIDVSHS-IEVYLVLSATTKYEDLK---------EIIK 333 (407)
T ss_pred HHHHHHHHhh----cCCEEEEeCCCCCccCHHHHHHH---HHHHhcccc-ceEEEEEecCcchHHHH---------HHHH
Confidence 7888877654 47999999999654 3333221 122222323 35667788876655543 3455
Q ss_pred HHhh--cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhc
Q 025133 184 QIAF--ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 239 (257)
Q Consensus 184 ql~~--~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~ 239 (257)
|++. -+-++++|.|-... +..+...+.+-+ -++..-+.|+.=.++|.-
T Consensus 334 ~f~~~~i~~~I~TKlDET~s------~G~~~s~~~e~~--~PV~YvT~GQ~VPeDI~v 383 (407)
T COG1419 334 QFSLFPIDGLIFTKLDETTS------LGNLFSLMYETR--LPVSYVTNGQRVPEDIVV 383 (407)
T ss_pred HhccCCcceeEEEcccccCc------hhHHHHHHHHhC--CCeEEEeCCCCCCchhhh
Confidence 5543 36789999997764 566666665543 244445666554455443
No 230
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.88 E-value=5.6e-09 Score=78.13 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=64.3
Q ss_pred EEEecCCC-CCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcC
Q 025133 124 ILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 202 (257)
Q Consensus 124 ilIDt~G~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~ 202 (257)
-.|||||- .+...+-..+ +.....++++++|-.+....+.+. +.+..-...+.+-|++|+|+.+..
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL-----~tt~~dadvi~~v~~and~~s~f~--------p~f~~~~~k~vIgvVTK~DLaed~ 106 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHAL-----ITTLQDADVIIYVHAANDPESRFP--------PGFLDIGVKKVIGVVTKADLAEDA 106 (148)
T ss_pred cccCCchhhhhhhHHHHHH-----HHHhhccceeeeeecccCccccCC--------cccccccccceEEEEecccccchH
Confidence 37899993 3332221111 233456788888877664433211 222233345677799999999754
Q ss_pred CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 203 RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 203 ~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.++..+.+|.+.. ..+|| .|+....++++|++..
T Consensus 107 ----dI~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 107 ----DISLVKRWLREAG-AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ----hHHHHHHHHHHcC-CcceEEEeccCcccHHHHHHHH
Confidence 3789999998876 44666 6788888999988754
No 231
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.88 E-value=5.7e-09 Score=95.95 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=59.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh-cCEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D 197 (257)
.+..+.|+||||.. .+... .+......|.+++|+|+......... ...........++. +.++++||+|
T Consensus 83 ~~~~i~iiDtpGh~---~f~~~-----~~~~~~~aD~~ilVvDa~~~~~~~~~--~t~~~~~~~~~~~~~~iIVviNK~D 152 (426)
T TIGR00483 83 DKYEVTIVDCPGHR---DFIKN-----MITGASQADAAVLVVAVGDGEFEVQP--QTREHAFLARTLGINQLIVAINKMD 152 (426)
T ss_pred CCeEEEEEECCCHH---HHHHH-----HHhhhhhCCEEEEEEECCCCCcccCC--chHHHHHHHHHcCCCeEEEEEEChh
Confidence 35678999999943 22221 12234568999999999875211000 00000112233333 3567899999
Q ss_pred CCCcCC--CcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhh
Q 025133 198 LVSPER--SGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSE 236 (257)
Q Consensus 198 ~~~~~~--~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~ 236 (257)
+.+..+ .....+++...++... ...+++ +|++++.++.+
T Consensus 153 l~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 153 SVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 985322 1122345555555543 124455 89999988875
No 232
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.88 E-value=5.5e-09 Score=87.72 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=43.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... ......+.+.+.++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~--------~~l~~aD~~ilVvD~~~g~~~~t~~-----~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVT--------AALRLCDGALVVVDAVEGVCVQTET-----VLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHH--------HHHHhcCeeEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECCCcc
Confidence 46688999999876544332 1234578999999998764332211 1122223346789999999986
No 233
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.87 E-value=3e-08 Score=80.02 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=60.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+... .....+.+|+|+|..+.......... +...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~sf~~~~~~---~~~~~~~~~~~~piilvgnK~Dl 117 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPL--------SYPQTDVFLICFSLVSPASFENVRAK---WYPEVRHHCPNTPIILVGTKLDL 117 (174)
T ss_pred EEEEEEECCCchhhhhhhhh--------hcCCCCEEEEEEECCCHHHHHHHHHH---HHHHHHHhCCCCCEEEEeeChhh
Confidence 45679999996543332221 12357899999999864332111000 11111111 2477888999998
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.... .-..++.....++.+ ...++ .|++++.++++++...
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 118 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-AVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred ccChhhHHHHhhccCCCCCHHHHHHHHHHcC-CcEEEEecccccCCHHHHHHHH
Confidence 643210 011233333344443 33555 7999999999988654
No 234
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.87 E-value=3e-08 Score=80.68 Aligned_cols=108 Identities=9% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh--hcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~D~ 198 (257)
..+.+.||+|......+... ....++.+++|+|..+...... .. .+...+.+.. ..-++|.||+|+
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~--------~~~~a~~iilv~D~t~~~s~~~-i~---~~~~~~~~~~~~~~pilVgnK~Dl 116 (182)
T cd04128 49 ITFSIWDLGGQREFINMLPL--------VCNDAVAILFMFDLTRKSTLNS-IK---EWYRQARGFNKTAIPILVGTKYDL 116 (182)
T ss_pred EEEEEEeCCCchhHHHhhHH--------HCcCCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhCCCCCEEEEEEchhc
Confidence 44678999997544333221 1235789999999987544322 10 0122222221 123788999999
Q ss_pred CCcC---CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPE---RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~---~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.... +.....+...++.+.. . +.++ .|++++.|+++++....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~-~-~~~~e~SAk~g~~v~~lf~~l~ 162 (182)
T cd04128 117 FADLPPEEQEEITKQARKYAKAM-K-APLIFCSTSHSINVQKIFKIVL 162 (182)
T ss_pred cccccchhhhhhHHHHHHHHHHc-C-CEEEEEeCCCCCCHHHHHHHHH
Confidence 6321 1001122233333333 3 4555 89999999999988663
No 235
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.87 E-value=3.7e-08 Score=78.23 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=60.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.+.||+|........... ....+.+++|+|....... .... .+...+.+. ..+.++|.||.|
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~sf-~~~~---~~~~~~~~~~~~~~~iilvgnK~D 116 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQY--------YRRAQGIFLVYDISSERSY-QHIM---KWVSDVDEYAPEGVQKILIGNKAD 116 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHHH--------hcCCcEEEEEEECCCHHHH-HHHH---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 346689999965443332211 2356899999998764332 1111 122222222 235688889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+.. .++.....+..+ .+++ .|++++.++++++..+
T Consensus 117 l~~~~~v~--~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 117 EEQKRQVG--DEQGNKLAKEYG--MDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred cccccCCC--HHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 97654321 123333333332 4555 7899999999887654
No 236
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.86 E-value=1.8e-08 Score=96.06 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=63.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
+.+.|+||||..+....... ....+|.+++|+|+.......... ..........+.++|+||+|+.+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~--------~l~~aD~aILVvDat~g~~~qt~~-----~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSR--------SLAACEGALLLVDAAQGIEAQTLA-----NVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred EEEEEEECCCcHHHHHHHHH--------HHHhCCEEEEEecCCCCCCHhHHH-----HHHHHHHcCCCEEEEEECcCCCc
Confidence 56789999998765433321 233578999999998754322110 00111223457899999999865
Q ss_pred cCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
... ....+++...+. ..+..-+..|++++.|++++++.+...
T Consensus 137 ~~~-~~~~~el~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~ 178 (595)
T TIGR01393 137 ADP-ERVKKEIEEVIG-LDASEAILASAKTGIGIEEILEAIVKR 178 (595)
T ss_pred cCH-HHHHHHHHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHh
Confidence 321 011223332221 111112448999999999999887443
No 237
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.86 E-value=2.6e-08 Score=80.40 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=60.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|......+... .....+.+++|+|....... +.... .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~a~~~ilv~d~~~~~s~-~~~~~--~w~~~i~~~~~~~piilvgnK~Dl 117 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPL--------SYPQTDVFLVCFSVVSPSSF-ENVKE--KWVPEITHHCPKTPFLLVGTQIDL 117 (175)
T ss_pred EEEEEEECCCccchhhhhhh--------hcccCCEEEEEEECCCHHHH-HHHHH--HHHHHHHHhCCCCCEEEEEECHhh
Confidence 45679999998654333211 12357899999998764332 11100 011122221 3467889999998
Q ss_pred CCcCCCc----------chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSG----------DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~----------~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+.. -..++..+..++.+ ...++ .|++++.|+++++...
T Consensus 118 ~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~-~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 118 RDDPSTIEKLAKNKQKPITPETGEKLARDLK-AVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred hhChhhHHHhhhccCCCcCHHHHHHHHHHhC-CcEEEEecCCCCCCHHHHHHHH
Confidence 6542210 01122223333333 23455 7899999999988654
No 238
>PLN03108 Rab family protein; Provisional
Probab=98.85 E-value=9e-08 Score=79.64 Aligned_cols=104 Identities=17% Similarity=0.093 Sum_probs=58.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D~ 198 (257)
.+-++||+|.......... ....++.+++|+|+........ .. .+...+.+. ..+.++|.||+|+
T Consensus 56 ~l~l~Dt~G~~~~~~~~~~--------~~~~ad~~vlv~D~~~~~s~~~-l~---~~~~~~~~~~~~~~piiiv~nK~Dl 123 (210)
T PLN03108 56 KLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRETFNH-LA---SWLEDARQHANANMTIMLIGNKCDL 123 (210)
T ss_pred EEEEEeCCCcHHHHHHHHH--------HhccCCEEEEEEECCcHHHHHH-HH---HHHHHHHHhcCCCCcEEEEEECccC
Confidence 3568999996433222211 1224688999999986443211 10 011112222 3466889999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...... ..+...+..+..+ .+++ .|++++.++++++...
T Consensus 124 ~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 124 AHRRAV--STEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred ccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 764332 2344445554432 3455 7899999998866443
No 239
>PRK10218 GTP-binding protein; Provisional
Probab=98.84 E-value=2.9e-08 Score=94.55 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.++||||..+....... ....+|.+++|+|+.......... ........+.+.++++||+|+
T Consensus 66 ~~~~inliDTPG~~df~~~v~~--------~l~~aDg~ILVVDa~~G~~~qt~~-----~l~~a~~~gip~IVviNKiD~ 132 (607)
T PRK10218 66 NDYRINIVDTPGHADFGGEVER--------VMSMVDSVLLVVDAFDGPMPQTRF-----VTKKAFAYGLKPIVVINKVDR 132 (607)
T ss_pred CCEEEEEEECCCcchhHHHHHH--------HHHhCCEEEEEEecccCccHHHHH-----HHHHHHHcCCCEEEEEECcCC
Confidence 3567889999998765443321 234579999999998754332211 122334456788999999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCC-----CCEEE-EeecCCc----------ChhhhhcCccCC
Q 025133 199 VSPERSGDSLDELEKEIHEINS-----LAHVI-RSVRCQV----------DLSEVLNCRAYD 244 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~-----~a~i~-~s~~~~~----------~~~~l~~~~~~~ 244 (257)
..... .+.++++...+..+.. ..+++ .|+..+. ++..|++.+...
T Consensus 133 ~~a~~-~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~ 193 (607)
T PRK10218 133 PGARP-DWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH 193 (607)
T ss_pred CCCch-hHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence 75422 2345566665543211 12344 7888876 466676665433
No 240
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.84 E-value=1.5e-08 Score=92.67 Aligned_cols=110 Identities=22% Similarity=0.264 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHHhh-cCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~ 198 (257)
..+.|+||||.. .+.. ..+.....+|.+++|+|+.... ...... ....+...+. +.++|+||+|+
T Consensus 85 ~~i~liDtPG~~---~f~~-----~~~~~~~~~D~~llVVDa~~~~~~~~t~~-----~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHE---TLMA-----TMLSGAALMDGAILVIAANEPCPQPQTKE-----HLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHH---HHHH-----HHHHHHhhCCEEEEEEECCCCCCChhHHH-----HHHHHHHcCCCcEEEEEEeecc
Confidence 568899999943 2222 2233445679999999998642 111110 1122333333 35788999999
Q ss_pred CCcCCCcchHHHHHHHHHHh-CCCCEEE-EeecCCcChhhhhcCccC
Q 025133 199 VSPERSGDSLDELEKEIHEI-NSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~-~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.+.++.....+.+...++.. ....+++ +|++.+.++++|++.+..
T Consensus 152 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~ 198 (411)
T PRK04000 152 VSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEE 198 (411)
T ss_pred ccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 87654222234455544432 1234555 899999999998887643
No 241
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.83 E-value=3.6e-08 Score=82.63 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=59.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+.... ....+.+|+|+|..+...... .. .+...+.+. ..|.++|.||+|+
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilvfD~~~~~s~~~-i~---~w~~~i~~~~~~~piilvgNK~Dl 129 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGY--------YIHGQCAIIMFDVTARLTYKN-VP---TWHRDLCRVCENIPIVLCGNKVDV 129 (219)
T ss_pred EEEEEEECCCchhhhhhhHHH--------cccccEEEEEEeCCCHHHHHH-HH---HHHHHHHHhCCCCcEEEEEEchhh
Confidence 456799999976544333211 224678999999987543321 10 011112111 3577889999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
...... .+.+ ...+ .. ..+++ .|++++.++++++..+.
T Consensus 130 ~~~~v~---~~~~-~~~~-~~-~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 130 KNRQVK---AKQV-TFHR-KK-NLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred hhccCC---HHHH-HHHH-hc-CCEEEEcCCCCCCCHHHHHHHHH
Confidence 653221 1222 2222 22 23455 78999999998886654
No 242
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.83 E-value=2.4e-08 Score=81.60 Aligned_cols=110 Identities=19% Similarity=0.130 Sum_probs=59.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|......+.. . ....++.+++|+|..+......... .+...+.+. ..|.++|.||+|+
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~-----~---~~~~a~~~ilv~dv~~~~sf~~~~~---~~~~~i~~~~~~~piilvgNK~Dl 116 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRS-----L---SYADTDVIMLCFSVDSPDSLENVES---KWLGEIREHCPGVKLVLVALKCDL 116 (189)
T ss_pred EEEEEEECCCChhcccccc-----c---cccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 4577999999743322211 1 1234678888888776543211100 011122221 3467889999999
Q ss_pred CCcCCCcc----------hHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGD----------SLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~----------~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
....+... ..++.....++.+ ...++ .|++++.|+++++....
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk~~~~v~e~f~~l~ 170 (189)
T cd04134 117 REARNERDDLQRYGKHTISYEEGLAVAKRIN-ALRYLECSAKLNRGVNEAFTEAA 170 (189)
T ss_pred ccChhhHHHHhhccCCCCCHHHHHHHHHHcC-CCEEEEccCCcCCCHHHHHHHHH
Confidence 76532100 1122233333333 23455 79999999999887663
No 243
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.83 E-value=7.1e-09 Score=88.48 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++++|.+|+|||||+|+|++
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg 53 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFG 53 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 34789999999999999999994
No 244
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.83 E-value=1.5e-08 Score=96.34 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.||||||..+.....+ .....+|.+++|+|+.......... +.....+...+.++++||+|+
T Consensus 62 ~~~kinlIDTPGh~DF~~ev~--------~~l~~aD~alLVVDa~~G~~~qT~~-----~l~~a~~~~ip~IVviNKiD~ 128 (594)
T TIGR01394 62 NGTKINIVDTPGHADFGGEVE--------RVLGMVDGVLLLVDASEGPMPQTRF-----VLKKALELGLKPIVVINKIDR 128 (594)
T ss_pred CCEEEEEEECCCHHHHHHHHH--------HHHHhCCEEEEEEeCCCCCcHHHHH-----HHHHHHHCCCCEEEEEECCCC
Confidence 456788999999765433222 1223579999999998654322211 223344556788999999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCC-----CCEE-EEeecCCc----------ChhhhhcCccCC
Q 025133 199 VSPERSGDSLDELEKEIHEINS-----LAHV-IRSVRCQV----------DLSEVLNCRAYD 244 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~-----~a~i-~~s~~~~~----------~~~~l~~~~~~~ 244 (257)
..... .+.++++...+..+.. ..++ ..|++.+. ++..|++.+...
T Consensus 129 ~~a~~-~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 129 PSARP-DEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred CCcCH-HHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence 65421 1234555555543321 1234 47887774 677777766443
No 245
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.82 E-value=2.8e-08 Score=80.97 Aligned_cols=109 Identities=14% Similarity=0.103 Sum_probs=57.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......... . ....++.+++++|....... +.... .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~-----~---~~~~a~~~llv~~i~~~~s~-~~~~~--~~~~~i~~~~~~~piilvgnK~Dl 117 (187)
T cd04129 49 VQLALWDTAGQEEYERLRP-----L---SYSKAHVILIGFAVDTPDSL-ENVRT--KWIEEVRRYCPNVPVILVGLKKDL 117 (187)
T ss_pred EEEEEEECCCChhccccch-----h---hcCCCCEEEEEEECCCHHHH-HHHHH--HHHHHHHHhCCCCCEEEEeeChhh
Confidence 3467889999643321111 0 12345778888887654322 11100 022222222 3567889999998
Q ss_pred CCcCC--------CcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPER--------SGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~--------~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..... .....+......+..+ ...++ .|++++.++++++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~f~~l 168 (187)
T cd04129 118 RQDAVAKEEYRTQRFVPIQQGKRVAKEIG-AKKYMECSALTGEGVDDVFEAA 168 (187)
T ss_pred hhCcccccccccCCcCCHHHHHHHHHHhC-CcEEEEccCCCCCCHHHHHHHH
Confidence 54210 0011233333334333 22455 7899999999888776
No 246
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.82 E-value=1e-07 Score=86.41 Aligned_cols=173 Identities=12% Similarity=0.080 Sum_probs=94.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
..+++++|++|+||||++.+|... ..|.+++++..|... .+....+.... ..++.. ....++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R-~aA~eQLk~yAe~lgvp~-------------~~~~~~ 288 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR-IAAIEQLKRYADTMGMPF-------------YPVKDI 288 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh-hhHHHHHHHHHHhcCCCe-------------eehHHH
Confidence 347899999999999999999753 457899999998754 22222222110 001100 001112
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccc--eeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~--~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
. .+.+.+. ..++|+|||||+|.... ...++.+. ..+... .....+++|+|+......+... ...+.
T Consensus 289 ~-~l~~~l~-~~~~D~VLIDTaGr~~rd~~~l~eL~--~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~------~~~f~- 357 (432)
T PRK12724 289 K-KFKETLA-RDGSELILIDTAGYSHRNLEQLERMQ--SFYSCFGEKDSVENLLVLSSTSSYHHTLTV------LKAYE- 357 (432)
T ss_pred H-HHHHHHH-hCCCCEEEEeCCCCCccCHHHHHHHH--HHHHhhcCCCCCeEEEEEeCCCCHHHHHHH------HHHhc-
Confidence 2 2222222 36789999999997642 33332221 111111 1123578899999877554432 12221
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
.-..+-+|++|.|-... ...+.......+ .++..-+.|+.=.++|
T Consensus 358 ~~~~~glIlTKLDEt~~------~G~il~i~~~~~--lPI~ylt~GQ~VPeDi 402 (432)
T PRK12724 358 SLNYRRILLTKLDEADF------LGSFLELADTYS--KSFTYLSVGQEVPFDI 402 (432)
T ss_pred CCCCCEEEEEcccCCCC------ccHHHHHHHHHC--CCEEEEecCCCCCCCH
Confidence 22368999999998654 344444444332 3455445554333333
No 247
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=9.7e-09 Score=90.02 Aligned_cols=167 Identities=23% Similarity=0.348 Sum_probs=93.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc-CCCC----------eEEEEecC-----CCcccccchh--h--hhc-CCCCceee
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG-KHGK----------RIAVILNE-----FGEEIGVERA--M--INE-GEGGALVE 89 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~----------~v~ii~~~-----~g~~~~~d~~--~--~~~-~~~~~~~~ 89 (257)
.-|.|++.|.-..||||+|+.|+.. .+|. -+++...+ +|++.-+|.. + ++. |+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~------ 130 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN------ 130 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH------
Confidence 5689999999999999999999975 2232 22232221 2221111100 0 000 00
Q ss_pred eeeecCCCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHH--HHhccccccccc-ceeeeeEEEEEeccchH
Q 025133 90 EWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLES-AVRLDSIITVVDAKNLL 166 (257)
Q Consensus 90 ~~~~l~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~--~~~~~~~~~~~~-~~~~~~vi~vvDa~~~~ 166 (257)
.+.+...|..+++.+.+ .+-+|||||+-..... ...+-+...+.. +.++|.+++|+||....
T Consensus 131 ---aflnRf~csqmp~~vLe------------~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD 195 (532)
T KOG1954|consen 131 ---AFLNRFMCSQLPNQVLE------------SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD 195 (532)
T ss_pred ---HHHHHHHHhcCChhhhh------------heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc
Confidence 00111222223333322 3569999996544322 111111111111 24789999999997543
Q ss_pred HHHhhhccCCChhHHHHHHh---hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE
Q 025133 167 FQIDKYRHLSSYPEAIHQIA---FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (257)
Q Consensus 167 ~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~ 225 (257)
- .++ +.+.+.+++ .-.-+|+||+|.++..+..+.+..+.+.|.++...+.+.
T Consensus 196 I-sdE------f~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~ 250 (532)
T KOG1954|consen 196 I-SDE------FKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVS 250 (532)
T ss_pred c-cHH------HHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcce
Confidence 2 111 334455554 345889999999999887777888888888876555443
No 248
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=4.4e-08 Score=86.45 Aligned_cols=153 Identities=22% Similarity=0.239 Sum_probs=89.6
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccch
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH 105 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~ 105 (257)
...+..|+.++|..|+||||.+-+|..+ +.|.+++.+-.|.-..-.+|.-..+-...++.+.. .+..-
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg----------syte~ 166 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG----------SYTEA 166 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe----------ccccc
Confidence 4446669999999999999999999874 66999999887743211122111111001111100 00111
Q ss_pred hHHHHHHHHHH--hcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 106 SLVQALEQLVQ--RKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 106 ~~~~~l~~~~~--~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
+......+=+. ++.++|+||+||+|=++. ..+.+.+. ........+.+|+|+||+.+...... ...+
T Consensus 167 dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~---~v~~ai~Pd~vi~VmDasiGQaae~Q-------a~aF 236 (483)
T KOG0780|consen 167 DPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMK---QVSKAIKPDEIIFVMDASIGQAAEAQ-------ARAF 236 (483)
T ss_pred chHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHH---HHHhhcCCCeEEEEEeccccHhHHHH-------HHHH
Confidence 11111111111 256899999999996553 33433321 33456678999999999988765332 2334
Q ss_pred HHHhhcCEEEEeCCCCCC
Q 025133 183 HQIAFADVVILNKVDLVS 200 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~ 200 (257)
.+--.---++++|.|--.
T Consensus 237 k~~vdvg~vIlTKlDGha 254 (483)
T KOG0780|consen 237 KETVDVGAVILTKLDGHA 254 (483)
T ss_pred HHhhccceEEEEecccCC
Confidence 443334568999999654
No 249
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.80 E-value=1.9e-08 Score=91.85 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=64.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHHhhc-CEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~ 198 (257)
..+.|+||||... +... .+.....+|.+++|+|+.... ..... .....+..++.+ .++++||+|+
T Consensus 80 ~~i~liDtPGh~~---f~~~-----~~~g~~~aD~aIlVVDa~~g~~~~qt~-----e~l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 80 RRVSFVDAPGHET---LMAT-----MLSGAALMDGALLVIAANEPCPQPQTK-----EHLMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred cEEEEEECCCHHH---HHHH-----HHHHHHHCCEEEEEEECCCCccccchH-----HHHHHHHHcCCCeEEEEEEcccc
Confidence 4688999999532 2211 122334579999999998643 11110 011222333333 5778999999
Q ss_pred CCcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCccC
Q 025133 199 VSPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.+.++.....+++...++... ...+++ +|++++.+++++++.+..
T Consensus 147 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~ 193 (406)
T TIGR03680 147 VSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEK 193 (406)
T ss_pred CCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHH
Confidence 875432222344445444321 234555 899999999988887743
No 250
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.80 E-value=2.4e-08 Score=95.29 Aligned_cols=110 Identities=21% Similarity=0.171 Sum_probs=64.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
++.+.|+||||..+....... ....+|.+++|+|+.......... ..........+.++|+||+|+.
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~--------sl~~aD~aILVVDas~gv~~qt~~-----~~~~~~~~~lpiIvViNKiDl~ 139 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSR--------SLAACEGALLVVDASQGVEAQTLA-----NVYLALENDLEIIPVLNKIDLP 139 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHH--------HHHHCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEEEECCCCC
Confidence 456789999998765433321 123578999999998754322210 0111223356789999999986
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCC
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
.... ....+++...+ ...+..-+..|++++.|++++++.+...
T Consensus 140 ~a~~-~~v~~ei~~~l-g~~~~~vi~iSAktG~GI~~Ll~~I~~~ 182 (600)
T PRK05433 140 AADP-ERVKQEIEDVI-GIDASDAVLVSAKTGIGIEEVLEAIVER 182 (600)
T ss_pred cccH-HHHHHHHHHHh-CCCcceEEEEecCCCCCHHHHHHHHHHh
Confidence 5321 01122232221 1122223458999999999999887433
No 251
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.79 E-value=2.6e-07 Score=85.80 Aligned_cols=166 Identities=21% Similarity=0.269 Sum_probs=90.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---C-CCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchh
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---K-HGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~-~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
..+++|+|+.|+||||++.+|... . .+++++++..|... .+....+...+. .+..+. . .....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR-igA~EQLk~ya~iLgv~v~---~-------a~d~~~ 418 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR-VGGREQLHSYGRQLGIAVH---E-------ADSAES 418 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc-ccHHHHHHHhhcccCceeE---e-------cCcHHH
Confidence 468999999999999999999753 2 25789999888643 222222221110 011000 0 011223
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
+...+. +..++++|||||+|...... ..+.+. .+.... ....++|+++......+.. ....+...
T Consensus 419 L~~aL~----~l~~~DLVLIDTaG~s~~D~~l~eeL~---~L~aa~-~~a~lLVLpAtss~~Dl~e------ii~~f~~~ 484 (559)
T PRK12727 419 LLDLLE----RLRDYKLVLIDTAGMGQRDRALAAQLN---WLRAAR-QVTSLLVLPANAHFSDLDE------VVRRFAHA 484 (559)
T ss_pred HHHHHH----HhccCCEEEecCCCcchhhHHHHHHHH---HHHHhh-cCCcEEEEECCCChhHHHH------HHHHHHhh
Confidence 444443 34568999999999865432 222111 111111 2356788888765444332 12223332
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ 231 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~ 231 (257)
....+|+||+|.... +..+...+...+ .+|...+.|+
T Consensus 485 -~~~gvILTKlDEt~~------lG~aLsv~~~~~--LPI~yvt~GQ 521 (559)
T PRK12727 485 -KPQGVVLTKLDETGR------FGSALSVVVDHQ--MPITWVTDGQ 521 (559)
T ss_pred -CCeEEEEecCcCccc------hhHHHHHHHHhC--CCEEEEeCCC
Confidence 467899999998543 455555554433 3455445553
No 252
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.79 E-value=2.5e-08 Score=86.98 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=70.4
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+.+...++++|.+|+||||++|.|+ +.+++.++.-.+.+.... |..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIl----G~~v~~vs~f~s~t~~~~----------------------~~~~------- 81 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSII----GERIATVSAFQSEGLRPM----------------------MVSR------- 81 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCcceeEE----------------------EEEE-------
Confidence 4566789999999999999999999 444444433222100000 0000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcc--cccccccceeeeeEEEE--EeccchHHH-HhhhccCCChhHHH-
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLW--LDDQLESAVRLDSIITV--VDAKNLLFQ-IDKYRHLSSYPEAI- 182 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~--~~~~~~~~~~~~~vi~v--vDa~~~~~~-~~~~~~~~~~~~~~- 182 (257)
...+..+.+|||||+.+.....+... +...+ ....++.+++| +|..+.... ..... .+...+
T Consensus 82 --------~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l-~~~g~DvVLyV~rLD~~R~~~~DkqlLk---~Iqe~FG 149 (313)
T TIGR00991 82 --------TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL-LGKTIDVLLYVDRLDAYRVDTLDGQVIR---AITDSFG 149 (313)
T ss_pred --------EECCeEEEEEECCCCCchHHHHHHHHHHHHHHh-hcCCCCEEEEEeccCcccCCHHHHHHHH---HHHHHhh
Confidence 01245688999999987643222110 01111 12368899999 455444321 11110 011111
Q ss_pred HHHhhcCEEEEeCCCCCCcC
Q 025133 183 HQIAFADVVILNKVDLVSPE 202 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~ 202 (257)
..+-...++++|+.|...++
T Consensus 150 ~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 150 KDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred hhhhccEEEEEECCccCCCC
Confidence 33345578899999988543
No 253
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.78 E-value=3.3e-08 Score=88.71 Aligned_cols=176 Identities=17% Similarity=0.194 Sum_probs=92.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEE-----------EEecCCCccccc-chhhhhcCCCCceeeeeeecCCCcee
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIA-----------VILNEFGEEIGV-ERAMINEGEGGALVEEWVELANGCIC 100 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~-----------ii~~~~g~~~~~-d~~~~~~~~~~~~~~~~~~l~~gcic 100 (257)
-.++|+|+-++|||||+|++.+...--+++ +.+.-+|.++.. +...+-. ...++...
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~--------kAvEI~~~--- 86 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPN--------EAVEININ--- 86 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccC--------cceEEecc---
Confidence 368999999999999999998420000333 444555532211 1111110 11111100
Q ss_pred eccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhccccc----------------------ccccce-eeeeEE
Q 025133 101 CTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDD----------------------QLESAV-RLDSII 157 (257)
Q Consensus 101 c~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~----------------------~~~~~~-~~~~vi 157 (257)
......+.||||+|+.....+..... +. ..+-.. ..+..+
T Consensus 87 ----------------~~~~~~VrlIDcvG~~v~GalG~~r~-~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgi 149 (492)
T TIGR02836 87 ----------------EGTKFKVRLVDCVGYTVKGALGYMEE-DKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGV 149 (492)
T ss_pred ----------------CCCcccEEEEECCCcccCCCccceec-cccccccCCcccccCchhhhhhhhHHHHHHhcCcEEE
Confidence 01235688999999765443321110 00 111122 567778
Q ss_pred EEE-ecc-------chHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEe--
Q 025133 158 TVV-DAK-------NLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS-- 227 (257)
Q Consensus 158 ~vv-Da~-------~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s-- 227 (257)
+|. |++ .+...-. .+...+++++.|.++|+||+|-..++. ..+...+++-.....+.++
T Consensus 150 vVtTDgsi~dI~Re~y~~aEe------~~i~eLk~~~kPfiivlN~~dp~~~et-----~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 150 VVTTDGTITDIPREDYVEAEE------RVIEELKELNKPFIILLNSTHPYHPET-----EALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred EEEcCCCccccccccchHHHH------HHHHHHHhcCCCEEEEEECcCCCCchh-----HHHHHHHHHHhCCceEEEEHH
Confidence 888 885 2222111 134567888899999999999554432 3333344333332223333
Q ss_pred ecCCcChhhhhcCccCCCCC
Q 025133 228 VRCQVDLSEVLNCRAYDATV 247 (257)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~~ 247 (257)
..+..++..++...+|-++-
T Consensus 219 ~l~~~DI~~il~~vL~EFPv 238 (492)
T TIGR02836 219 SMRESDILSVLEEVLYEFPI 238 (492)
T ss_pred HcCHHHHHHHHHHHHhcCCc
Confidence 34456777777777766443
No 254
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.78 E-value=8.3e-08 Score=87.98 Aligned_cols=174 Identities=21% Similarity=0.209 Sum_probs=93.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~----~~~~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+++|+|++|+||||++.+|..+ ..+.+++++..|+.. .+....+..... .++.. ..+....++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r-~~a~eqL~~~a~~~~vp~----------~~~~~~~~l 290 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR-IGAVEQLKTYAKIMGIPV----------EVVYDPKEL 290 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH-HHHHHHHHHHHHHhCCce----------EccCCHHhH
Confidence 58999999999999999999653 346899999998753 222222211100 01100 011223345
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+.+ ..++|+|||||+|..... ...+.+ ...+.....-..+.+|+++......+... ...+..+.
T Consensus 291 ~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L--~~ll~~~~~~~~~~LVl~a~~~~~~l~~~------~~~f~~~~ 358 (424)
T PRK05703 291 AKALEQ----LRDCDVILIDTAGRSQRDKRLIEEL--KALIEFSGEPIDVYLVLSATTKYEDLKDI------YKHFSRLP 358 (424)
T ss_pred HHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHH--HHHHhccCCCCeEEEEEECCCCHHHHHHH------HHHhCCCC
Confidence 555443 346899999999975432 222211 11111111123667889987665543321 12222222
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
.+-++++|.|.... ...+...+...+ .++...+.|+.=.++|.
T Consensus 359 -~~~vI~TKlDet~~------~G~i~~~~~~~~--lPv~yit~Gq~VpdDl~ 401 (424)
T PRK05703 359 -LDGLIFTKLDETSS------LGSILSLLIESG--LPISYLTNGQRVPDDIK 401 (424)
T ss_pred -CCEEEEeccccccc------ccHHHHHHHHHC--CCEEEEeCCCCChhhhh
Confidence 46799999998654 344555555433 24554455543234443
No 255
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.76 E-value=3.4e-08 Score=91.21 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=68.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch-HHHHhhhccCCChhHHHHHHhhc-CEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~ 198 (257)
..+.||||||-. .+.. ..+.....+|.+++|||+..+ ...... ........++.+ .++++||+|+
T Consensus 117 ~~i~~IDtPGH~---~fi~-----~m~~g~~~~D~alLVVda~~g~~~~qT~-----ehl~i~~~lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 117 RHVSFVDCPGHD---ILMA-----TMLNGAAVMDAALLLIAANESCPQPQTS-----EHLAAVEIMKLKHIIILQNKIDL 183 (460)
T ss_pred ceEeeeeCCCHH---HHHH-----HHHHHHhhCCEEEEEEECCCCccchhhH-----HHHHHHHHcCCCcEEEEEecccc
Confidence 457899999942 2322 122345578999999999864 222111 012233445555 4679999999
Q ss_pred CCcCCCcchHHHHHHHHHHh-CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEI-NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~-~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+.++..+.++++...++.. ....+++ +|+.++.|++.|++.+.
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~ 229 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYIC 229 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 87554333345555555442 2345666 89999999999998876
No 256
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.76 E-value=7e-09 Score=89.50 Aligned_cols=101 Identities=21% Similarity=0.185 Sum_probs=58.4
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++++|+||+|||||+|+|.+ .++ .+.+.|++++......+ .+ .+.-...|.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~----~~~-~~~n~pftTi~p~~g~v-------------~v---------~d~r~~~l~~~ 53 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTK----AGA-EAANYPFCTIEPNVGIV-------------PV---------PDERLDKLAEI 53 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhC----CCC-ccccccccchhceeeeE-------------Ee---------ccchhhhHHHH
Confidence 47899999999999999994 333 45555665332211111 11 01111222222
Q ss_pred HH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 115 VQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 115 ~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
.. +.....+.|+|+||+.......+.+. ...+.+..++|.+++|||+.
T Consensus 54 ~~~~k~~~~~i~lvD~pGl~~~a~~~~glg-~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 54 VKPKKIVPATIEFVDIAGLVKGASKGEGLG-NKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hCCceeeeeEEEEEECCCcCCCCchhhHHH-HHHHHHHHhCCEEEEEEeCc
Confidence 21 01123589999999886543333222 23455667899999999974
No 257
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.75 E-value=1.2e-07 Score=75.74 Aligned_cols=104 Identities=15% Similarity=0.075 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-hcCEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~-~~~vivlNK~D~~ 199 (257)
..+-|++|||.....-+.+.+. + ....++++||.++....... .+..++.... .|.++.+||.|+.
T Consensus 68 ~~v~LfgtPGq~RF~fm~~~l~-----~---ga~gaivlVDss~~~~~~a~-----~ii~f~~~~~~ip~vVa~NK~DL~ 134 (187)
T COG2229 68 TGVHLFGTPGQERFKFMWEILS-----R---GAVGAIVLVDSSRPITFHAE-----EIIDFLTSRNPIPVVVAINKQDLF 134 (187)
T ss_pred ceEEEecCCCcHHHHHHHHHHh-----C---CcceEEEEEecCCCcchHHH-----HHHHHHhhccCCCEEEEeeccccC
Confidence 5567999999765544444332 1 26788999999876553111 1223333333 5678889999999
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+... -+.+++.++..+-..+++ ..+..+.+..+-+...
T Consensus 135 ~a~p----pe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~l 173 (187)
T COG2229 135 DALP----PEKIREALKLELLSVPVIEIDATEGEGARDQLDVL 173 (187)
T ss_pred CCCC----HHHHHHHHHhccCCCceeeeecccchhHHHHHHHH
Confidence 8754 678888887765344555 5666566665555444
No 258
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.75 E-value=4e-08 Score=89.25 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=37.0
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCE-EEEeecCCcChhh-----hhcCccCCCCCCCcccccc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH-VIRSVRCQVDLSE-----VLNCRAYDATVNPIKLCSE 255 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~-i~~s~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~ 255 (257)
.|.++|+||+|.....+ .+..+.++ ++.. +.+|+..+.+++. +.+.....+..+|.+.+++
T Consensus 218 KPvI~VlNK~D~~~~~~---~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd 284 (396)
T PRK09602 218 KPMVIAANKADLPPAEE---NIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSE 284 (396)
T ss_pred CCEEEEEEchhcccchH---HHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCH
Confidence 57889999999764321 13333332 3444 4489999888766 4444455556666665553
No 259
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.73 E-value=8.6e-08 Score=88.54 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=62.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHHHhhcCE-EEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFADV-VILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~ql~~~~v-ivlNK 195 (257)
.+..+.||||||..+ +... .......+|.+++|+|+..+... +....+..........++.+.+ +++||
T Consensus 83 ~~~~i~lIDtPGh~~---f~~~-----~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNK 154 (446)
T PTZ00141 83 PKYYFTIIDAPGHRD---FIKN-----MITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINK 154 (446)
T ss_pred CCeEEEEEECCChHH---HHHH-----HHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEc
Confidence 456789999999432 2221 12334578999999999875311 0000000001223445566764 79999
Q ss_pred CCCCC----cCCCcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhh
Q 025133 196 VDLVS----PERSGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSE 236 (257)
Q Consensus 196 ~D~~~----~~~~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~ 236 (257)
+|... ++...+..+++...++...- ..+++ +|+.++.|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99432 22223345556666655322 34555 89999888753
No 260
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.73 E-value=1.8e-08 Score=89.87 Aligned_cols=103 Identities=21% Similarity=0.189 Sum_probs=61.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|+||+|||||+|+|.+ .+ +.+.+.|++++......+. +. +.-...|.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~----~~-~~v~nypftTi~p~~G~~~-------------v~---------d~r~~~l~ 55 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTK----AG-AEAANYPFCTIEPNVGVVP-------------VP---------DPRLDKLA 55 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhC----CC-CeecccccccccceEEEEE-------------ec---------cccchhhH
Confidence 4689999999999999999994 34 4566667753322111111 00 00011122
Q ss_pred HHHH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 113 QLVQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 113 ~~~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
++.. +.-...+.|+|+||+.......+.+. ...+.+..++|.+++|||+.
T Consensus 56 ~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg-~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 56 EIVKPKKIVPATIEFVDIAGLVKGASKGEGLG-NQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HhcCCccccCceEEEEECCCCCCCCChHHHHH-HHHHHHHHhCCEEEEEEeCC
Confidence 2111 01123589999999886543333222 34456677899999999985
No 261
>PTZ00258 GTP-binding protein; Provisional
Probab=98.70 E-value=2.1e-08 Score=90.34 Aligned_cols=106 Identities=21% Similarity=0.073 Sum_probs=62.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
....-++|+|+||+|||||+|+|.+ .+ +.+.+-|+++.......+ ...+.-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~----~~-~~v~n~pftTi~p~~g~v----------------------~~~d~r~~ 71 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCK----QQ-VPAENFPFCTIDPNTARV----------------------NVPDERFD 71 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhc----Cc-ccccCCCCCcccceEEEE----------------------ecccchhh
Confidence 3444689999999999999999974 33 356666765322111110 11111112
Q ss_pred HHHHHHH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 110 ALEQLVQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 110 ~l~~~~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
.|.++.. +.-+.++.|+||||+.......+.+. ...+....++|.+++|+|+.
T Consensus 72 ~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg-~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 72 WLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLG-NAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHH-HHHHHHHHHCCEEEEEEeCC
Confidence 2222221 11245799999999886543322222 24456677899999999984
No 262
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.69 E-value=3.4e-07 Score=84.73 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=88.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEecCCCcccccchhhhhcCC-CCceeeeeeecCCCceeeccchhH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~---~~~-~~v~ii~~~~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+++++|++|+||||++.+|... ..| ++++++..|... .+.-..+...+. .++ ....+..+.++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R-igA~EQLr~~AeilGV----------pv~~~~~~~Dl 325 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR-IGGHEQLRIYGKILGV----------PVHAVKDAADL 325 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc-hhHHHHHHHHHHHhCC----------CeeccCCchhH
Confidence 58999999999999999999863 334 589999988753 322222211100 000 00111223334
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHHH-HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~-~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+.+ ..+.++++|||+|..+.... .+.+. .+.........++|+|+......+... ...+.. .
T Consensus 326 ~~aL~~----L~d~d~VLIDTaGr~~~d~~~~e~~~---~l~~~~~p~e~~LVLdAt~~~~~l~~i------~~~f~~-~ 391 (484)
T PRK06995 326 RLALSE----LRNKHIVLIDTIGMSQRDRMVSEQIA---MLHGAGAPVKRLLLLNATSHGDTLNEV------VQAYRG-P 391 (484)
T ss_pred HHHHHh----ccCCCeEEeCCCCcChhhHHHHHHHH---HHhccCCCCeeEEEEeCCCcHHHHHHH------HHHhcc-C
Confidence 333332 34678999999997654322 22111 111111122378899998765543321 112222 2
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecC
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 230 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~ 230 (257)
..+-+|+||.|.... +..+...+...+ .+|...+.|
T Consensus 392 ~~~g~IlTKlDet~~------~G~~l~i~~~~~--lPI~yvt~G 427 (484)
T PRK06995 392 GLAGCILTKLDEAAS------LGGALDVVIRYK--LPLHYVSNG 427 (484)
T ss_pred CCCEEEEeCCCCccc------chHHHHHHHHHC--CCeEEEecC
Confidence 356789999997754 344444444432 234433444
No 263
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.68 E-value=1.2e-07 Score=77.66 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=60.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+-+.||+|......+.... ...++.+++|+|..+.... +.... .+...+.+. ..|.++|.||.|+
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~--------~~~a~~~ilvydit~~~Sf-~~~~~--~w~~~i~~~~~~~piilvgNK~DL 119 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLS--------YPQTNVFIICFSIASPSSY-ENVRH--KWHPEVCHHCPNVPILLVGTKKDL 119 (191)
T ss_pred EEEEEEECCCchhhhhhhhhh--------ccCCCEEEEEEECCCHHHH-HHHHH--HHHHHHHhhCCCCCEEEEEeChhh
Confidence 456799999975544332211 2357899999998765432 21100 011111111 3467889999998
Q ss_pred CCcCCCc----------chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSG----------DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~----------~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+..... -..++...+.++.+. ...+ .|++.+.|+.+++....
T Consensus 120 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-~~~~e~SAk~g~~v~e~f~~l~ 173 (191)
T cd01875 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHA-VKYLECSALNQDGVKEVFAEAV 173 (191)
T ss_pred hcChhhHHHHhhccCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCCHHHHHHHHH
Confidence 6542100 011222233333332 2455 78999999998887764
No 264
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=7e-08 Score=88.45 Aligned_cols=105 Identities=21% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+-+-+|||||-.+.. ++.. ...-++.+++||||..+........ .-...+...+.+.|+||+|+-
T Consensus 125 ylLNLIDTPGHvDFs~EVsR---------slaac~G~lLvVDA~qGvqAQT~an-----f~lAfe~~L~iIpVlNKIDlp 190 (650)
T KOG0462|consen 125 YLLNLIDTPGHVDFSGEVSR---------SLAACDGALLVVDASQGVQAQTVAN-----FYLAFEAGLAIIPVLNKIDLP 190 (650)
T ss_pred eEEEeecCCCcccccceehe---------hhhhcCceEEEEEcCcCchHHHHHH-----HHHHHHcCCeEEEeeeccCCC
Confidence 456699999966553 2222 2335799999999999887654321 111233456778899999998
Q ss_pred CcCCCcchHHHHHHHHHHhC--CCCE-EEEeecCCcChhhhhcCccCC
Q 025133 200 SPERSGDSLDELEKEIHEIN--SLAH-VIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~--~~a~-i~~s~~~~~~~~~l~~~~~~~ 244 (257)
+++ .+.+...+.+++ |.++ +.+|++.|.+.++++.++.-.
T Consensus 191 ~ad-----pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~r 233 (650)
T KOG0462|consen 191 SAD-----PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRR 233 (650)
T ss_pred CCC-----HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhh
Confidence 875 577777776643 3344 559999999999998887543
No 265
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.66 E-value=3.4e-07 Score=72.72 Aligned_cols=101 Identities=8% Similarity=0.092 Sum_probs=55.7
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVDL 198 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D~ 198 (257)
+.+-||+|.... .. ....+.+++|+|..+........ . +...+.+. ..|.++|.||.|+
T Consensus 49 l~i~D~~g~~~~-~~------------~~~~~~~ilv~d~~~~~sf~~~~-~---~~~~i~~~~~~~~~piilvgnK~Dl 111 (158)
T cd04103 49 LLIRDEGGAPDA-QF------------ASWVDAVIFVFSLENEASFQTVY-N---LYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred EEEEECCCCCch-hH------------HhcCCEEEEEEECCCHHHHHHHH-H---HHHHHHHhcCCCCCCEEEEeeHHHh
Confidence 557899998532 11 12357899999988755432211 0 11222222 1356788999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
....+..-..+...++.++... ..++ .|++++.|+++++...
T Consensus 112 ~~~~~~~v~~~~~~~~~~~~~~-~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 112 SESNPRVIDDARARQLCADMKR-CSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred hhcCCcccCHHHHHHHHHHhCC-CcEEEEecCCCCCHHHHHHHH
Confidence 5321110111222333333322 3455 7999999999988654
No 266
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.64 E-value=3e-07 Score=76.37 Aligned_cols=147 Identities=26% Similarity=0.391 Sum_probs=86.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCcc----cccch---------hhhh-----------------
Q 025133 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEE----IGVER---------AMIN----------------- 80 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~~----~~~d~---------~~~~----------------- 80 (257)
.++|+|.-|+||||+...|+.+ ..+.++.++..|+-.. +++.. .+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~ 81 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKE 81 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccccc
Confidence 5899999999999998886543 3458999998886210 11110 0000
Q ss_pred --------------cCCCCce-eeeeeecCCCceeeccchhHHHHHHHHHHhcCCCCEEEEecC-CCCCcHHHHHhcccc
Q 025133 81 --------------EGEGGAL-VEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETT-GLANPAPLASVLWLD 144 (257)
Q Consensus 81 --------------~~~~~~~-~~~~~~l~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~-G~~~~~~~~~~~~~~ 144 (257)
.+.-+.+ +....+...||.|.. ..-+...|+++. ....+++++||= |+-+..
T Consensus 82 ~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~-~allR~~l~~l~--~~~~e~VivDtEAGiEHfg--------- 149 (255)
T COG3640 82 NPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPM-NALLRRLLRHLI--LNRYEVVIVDTEAGIEHFG--------- 149 (255)
T ss_pred CcchhhhhHHHhhhcCCccEEEeccccCCCCcccchH-HHHHHHHHHHHh--cccCcEEEEecccchhhhc---------
Confidence 0001111 122334478999863 222333333333 456899999984 553321
Q ss_pred cccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-hcCEEEEeCCCCC
Q 025133 145 DQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVDLV 199 (257)
Q Consensus 145 ~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~-~~~vivlNK~D~~ 199 (257)
......+|.++.|+|++.-.-.... .+.+...+++ ....+|+||+|..
T Consensus 150 --Rg~~~~vD~vivVvDpS~~sl~tae-----ri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 --RGTIEGVDLVIVVVDPSYKSLRTAE-----RIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred --cccccCCCEEEEEeCCcHHHHHHHH-----HHHHHHHHhCCceEEEEEeeccch
Confidence 1234568999999999854322111 1344556677 6778899999855
No 267
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.64 E-value=8.8e-07 Score=69.88 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=64.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+-+.|++|..........+ ....+.+++++|..+.... .... .+...+.... .+.+++.||.|
T Consensus 48 ~~l~i~D~~g~~~~~~~~~~~--------~~~~~~~ii~fd~~~~~S~-~~~~---~~~~~i~~~~~~~~~iivvg~K~D 115 (162)
T PF00071_consen 48 VNLEIWDTSGQERFDSLRDIF--------YRNSDAIIIVFDVTDEESF-ENLK---KWLEEIQKYKPEDIPIIVVGNKSD 115 (162)
T ss_dssp EEEEEEEETTSGGGHHHHHHH--------HTTESEEEEEEETTBHHHH-HTHH---HHHHHHHHHSTTTSEEEEEEETTT
T ss_pred ccccccccccccccccccccc--------ccccccccccccccccccc-cccc---cccccccccccccccceeeecccc
Confidence 456799999975544433221 2346889999998865433 2211 1222222222 35677779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+....+. ..++...+.++.+ .+.+ .|++.+.++.+++...
T Consensus 116 ~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 116 LSDEREV--SVEEAQEFAKELG--VPYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp GGGGSSS--CHHHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHHH
T ss_pred ccccccc--hhhHHHHHHHHhC--CEEEEEECCCCCCHHHHHHHH
Confidence 8874443 2456666666655 5666 7888899998877543
No 268
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.64 E-value=3.5e-08 Score=78.28 Aligned_cols=92 Identities=25% Similarity=0.305 Sum_probs=58.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccc-----hhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVE-----RAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d-----~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
++.|+|++|||||||+++|+.. ..|.+++++.++.+. ..++ ...... . ......+.++|.||.....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~-~~~d~~~~D~~~~~~--a---ga~~v~~~~~~~~~~~~~~ 74 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHD-FDIDKNGKDSYRHRE--A---GADQVIVASSRRYAFMHET 74 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc-ccCCCccccHHHHHh--C---CCCEEEEecCCeEEEEEec
Confidence 5789999999999999999875 458899999987553 3222 222221 0 1234566778888763321
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCC
Q 025133 107 -LVQALEQLVQRKERLDHILLETTGL 131 (257)
Q Consensus 107 -~~~~l~~~~~~~~~~~~ilIDt~G~ 131 (257)
-...+.+++.+....|++|||.-+.
T Consensus 75 ~~~~~l~~ll~~~~~~D~vlVEG~k~ 100 (155)
T TIGR00176 75 QEERDLEALLDRLPDLDIILVEGFKD 100 (155)
T ss_pred CCCcCHHHHHhhCCCCCEEEECCCCC
Confidence 1223444443334589999997663
No 269
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.64 E-value=8.1e-07 Score=80.97 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=91.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---C-CCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCcee--eccch
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---K-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC--CTVKH 105 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~-~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic--c~~~~ 105 (257)
-.+++++|++|+||||++++|... . ...+++++..+.-. ++.-..+...+ .+. |.-+ +....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r-igalEQL~~~a----------~il-Gvp~~~v~~~~ 258 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR-IGGHEQLRIYG----------KLL-GVSVRSIKDIA 258 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc-hhHHHHHHHHH----------HHc-CCceecCCCHH
Confidence 358999999999999999999753 1 23577887776543 32221111110 000 1111 12233
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
++...+.. ..+.++++|||+|+..... ..+.+. .+.........++|+|+......+... ...+..
T Consensus 259 dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~---~l~~~~~~~~~~LVl~at~~~~~~~~~------~~~f~~ 325 (420)
T PRK14721 259 DLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIA---MLSQCGTQVKHLLLLNATSSGDTLDEV------ISAYQG 325 (420)
T ss_pred HHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHH---HHhccCCCceEEEEEcCCCCHHHHHHH------HHHhcC
Confidence 44444333 4578999999999876432 333221 122222234678999999766654432 112222
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecC
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 230 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~ 230 (257)
-..+-+|++|.|-... +..+...+...+ .++...+.|
T Consensus 326 -~~~~~~I~TKlDEt~~------~G~~l~~~~~~~--lPi~yvt~G 362 (420)
T PRK14721 326 -HGIHGCIITKVDEAAS------LGIALDAVIRRK--LVLHYVTNG 362 (420)
T ss_pred -CCCCEEEEEeeeCCCC------ccHHHHHHHHhC--CCEEEEECC
Confidence 2357899999998764 344555554432 234443444
No 270
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.64 E-value=3.3e-07 Score=86.19 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=49.3
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.|+||||..+..... ......+|.+++|+|+.......... +.........|.++++||+|+
T Consensus 78 ~~~~inliDTPG~~df~~~~--------~~~l~~aD~aIlVvDa~~gv~~~t~~-----l~~~~~~~~~PiivviNKiD~ 144 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSEDT--------YRTLTAVDNCLMVIDAAKGVETRTRK-----LMEVTRLRDTPIFTFMNKLDR 144 (527)
T ss_pred CCeEEEEEECCChhhHHHHH--------HHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCEEEEEECccc
Confidence 45678899999985332211 12234589999999998753322111 222333445688999999998
Q ss_pred CCcCCCcchHHHHHHHH
Q 025133 199 VSPERSGDSLDELEKEI 215 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l 215 (257)
...+. .+.++.++..+
T Consensus 145 ~~~~~-~~ll~~i~~~l 160 (527)
T TIGR00503 145 DIRDP-LELLDEVENEL 160 (527)
T ss_pred cCCCH-HHHHHHHHHHh
Confidence 75431 12344454444
No 271
>PTZ00416 elongation factor 2; Provisional
Probab=98.62 E-value=5.4e-08 Score=96.29 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=44.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.||||||..+..... ......+|.+++|+|+..+....... +.....+.+.|.++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~--------~~al~~~D~ailVvda~~g~~~~t~~-----~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEV--------TAALRVTDGALVVVDCVEGVCVQTET-----VLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHH--------HHHHhcCCeEEEEEECCCCcCccHHH-----HHHHHHHcCCCEEEEEEChhhh
Confidence 4558899999987632221 22345689999999999865543321 2223333456889999999997
No 272
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.61 E-value=4.8e-07 Score=85.15 Aligned_cols=83 Identities=22% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+..+.++||||..+...... .....+|.+++|+|+......... .+.....+.+.|.++++||+|+
T Consensus 77 ~~~~inliDTPG~~df~~~~~--------~~l~~aD~aIlVvDa~~gv~~~t~-----~l~~~~~~~~iPiiv~iNK~D~ 143 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTY--------RTLTAVDSALMVIDAAKGVEPQTR-----KLMEVCRLRDTPIFTFINKLDR 143 (526)
T ss_pred CCEEEEEEECCCchhhHHHHH--------HHHHHCCEEEEEEecCCCCCHHHH-----HHHHHHHhcCCCEEEEEECCcc
Confidence 356688999999765433221 122357999999999865432211 0223334456788999999998
Q ss_pred CCcCCCcchHHHHHHHH
Q 025133 199 VSPERSGDSLDELEKEI 215 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l 215 (257)
..... .+.+++++..+
T Consensus 144 ~~a~~-~~~l~~i~~~l 159 (526)
T PRK00741 144 DGREP-LELLDEIEEVL 159 (526)
T ss_pred cccCH-HHHHHHHHHHh
Confidence 76542 12344454444
No 273
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.61 E-value=5.3e-07 Score=73.40 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=60.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+... .....+.+++|+|..+......... .+...+.+. ..+.++|.||+|+
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~--------~~~~ad~~ilvyDit~~~Sf~~~~~---~w~~~i~~~~~~~piilVgNK~DL 121 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPL--------SYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred EEEEEEECCCchhhHhhhhh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEeEChhh
Confidence 44679999997543333221 1235789999999886543221100 012222222 2466888899998
Q ss_pred CCc----------CCCcchHHHHHHHHHHhCCCCEEE-EeecCCcC-hhhhhcCc
Q 025133 199 VSP----------ERSGDSLDELEKEIHEINSLAHVI-RSVRCQVD-LSEVLNCR 241 (257)
Q Consensus 199 ~~~----------~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~-~~~l~~~~ 241 (257)
... .+..-..++..++.++.+ ....+ .|++++.+ +++++...
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-~~~~~E~SAk~~~n~v~~~F~~~ 175 (182)
T cd04172 122 RTDLTTLVELSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVA 175 (182)
T ss_pred hcChhhHHHHHhcCCCCCCHHHHHHHHHHcC-CCEEEECCcCCCCCCHHHHHHHH
Confidence 542 110012334444444432 22455 78999998 99887654
No 274
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.60 E-value=2.9e-07 Score=74.52 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=62.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|..+...+... .....+.+++++|...-........ .+...+.+. ..+.++|-||+|+
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~--------~~~~a~~~ilvyd~~~~~Sf~~~~~---~w~~~i~~~~~~~piilvgnK~Dl 117 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPL--------SYRGADVFVLAFSLISRASYENVLK---KWVPELRHYAPNVPIVLVGTKLDL 117 (176)
T ss_pred EEEEEEECCCCccccccchh--------hcCCCcEEEEEEEcCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEeChhh
Confidence 44679999997654433221 1235689999999875443221100 012222222 2466888899999
Q ss_pred CCcCC--------CcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 199 VSPER--------SGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 199 ~~~~~--------~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.+... ..-..++..++.++. .....+ .|++.+.++++++....-
T Consensus 118 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~-~~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 118 RDDKQYLADHPGASPITTAQGEELRKQI-GAAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred ccChhhhhhccCCCCCCHHHHHHHHHHc-CCCEEEECCCCcccCHHHHHHHHHH
Confidence 65321 001133344444433 223455 789999999999877643
No 275
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.60 E-value=3.8e-07 Score=73.95 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=58.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+... ....++.+++|+|..+......... .+...+.+. ..+.++|.||+|+
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~--------~~~~a~~~ilvfdit~~~Sf~~~~~---~w~~~i~~~~~~~~iilVgnK~DL 117 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPL--------CYPDSDAVLICFDISRPETLDSVLK---KWRGEIQEFCPNTKVLLVGCKTDL 117 (178)
T ss_pred EEEEEEECCCchhhhhcchh--------hcCCCCEEEEEEECCChhhHHHHHH---HHHHHHHHHCCCCCEEEEEEChhh
Confidence 44679999996433222111 1235689999999876543221100 022222222 2356778899998
Q ss_pred CCc----------CCCcchHHHHHHHHHHhCCCCEEE-EeecCCcC-hhhhhcCc
Q 025133 199 VSP----------ERSGDSLDELEKEIHEINSLAHVI-RSVRCQVD-LSEVLNCR 241 (257)
Q Consensus 199 ~~~----------~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~-~~~l~~~~ 241 (257)
.+. .+..-..++..++.++.+ ....+ .|++++.+ +.+++...
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~-~~~~~E~SA~~~~~~v~~~F~~~ 171 (178)
T cd04131 118 RTDLSTLMELSHQRQAPVSYEQGCAIAKQLG-AEIYLECSAFTSEKSVRDIFHVA 171 (178)
T ss_pred hcChhHHHHHHhcCCCCCCHHHHHHHHHHhC-CCEEEECccCcCCcCHHHHHHHH
Confidence 542 010011234444444332 22444 78998884 99887654
No 276
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.59 E-value=9e-08 Score=86.94 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=85.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+...+..++.|+||+|||||+|.+..++.. +.+-+-+ +..++ .
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradve-----vqpYaFT----TksL~----------------------------v 207 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDE-----VQPYAFT----TKLLL----------------------------V 207 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccc-----cCCcccc----cchhh----------------------------h
Confidence 456778999999999999999999864211 1111111 11110 0
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CcHHHHHhccccc--ccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDD--QLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~-~~~~~~~~~~~~~--~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
..+. ..=-.|.+|||||+- +|.+-.+.+.+.. .+.+. + ..|+|+.|-+..-.+.-. .....+..+
T Consensus 208 GH~d-----ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL-r-aaVLYfmDLSe~CGySva-----~QvkLfhsI 275 (620)
T KOG1490|consen 208 GHLD-----YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL-R-SAVLYFMDLSEMCGYSVA-----AQVKLYHSI 275 (620)
T ss_pred hhhh-----hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh-h-hhheeeeechhhhCCCHH-----HHHHHHHHh
Confidence 0000 011247799999955 4554433332111 12222 2 368999998754332100 011122222
Q ss_pred -----hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChh
Q 025133 186 -----AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLS 235 (257)
Q Consensus 186 -----~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~ 235 (257)
..+.++|+||+|....+.+.+.-+++-..+.... ..+++ .|....+|+-
T Consensus 276 KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~-~v~v~~tS~~~eegVm 330 (620)
T KOG1490|consen 276 KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDG-NVKVVQTSCVQEEGVM 330 (620)
T ss_pred HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhcc-CceEEEecccchhcee
Confidence 2468999999999998887555555555555432 24555 4555555543
No 277
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.58 E-value=6.2e-07 Score=75.80 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=60.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|......+... ....++.+++|+|.++......... .+...+.+. ..+.++|.||+|+
T Consensus 61 v~l~iwDTaG~e~~~~~~~~--------~~~~ad~vIlVyDit~~~Sf~~~~~---~w~~~i~~~~~~~piilVgNK~DL 129 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPL--------CYSDSDAVLLCFDISRPETVDSALK---KWKAEIMDYCPSTRILLIGCKTDL 129 (232)
T ss_pred EEEEEEeCCCchhhHHHHHH--------HcCCCcEEEEEEECCChHHHHHHHH---HHHHHHHHhCCCCCEEEEEECccc
Confidence 45779999996543333221 1235789999999986544321100 012222222 2356888999998
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-EeecCCc-ChhhhhcCc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVRCQV-DLSEVLNCR 241 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~-~~~~l~~~~ 241 (257)
.... +..-..++..++.++.+ ....+ .|++++. ++++++...
T Consensus 130 ~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~-~~~~~EtSAktg~~~V~e~F~~~ 183 (232)
T cd04174 130 RTDLSTLMELSNQKQAPISYEQGCALAKQLG-AEVYLECSAFTSEKSIHSIFRSA 183 (232)
T ss_pred ccccchhhhhccccCCcCCHHHHHHHHHHcC-CCEEEEccCCcCCcCHHHHHHHH
Confidence 5420 01112344555555443 21344 7899887 799888765
No 278
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.58 E-value=3.2e-07 Score=79.70 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=32.8
Q ss_pred ceeeeeEEEEEeccc-hHHHHhhhccCCChhHHHHHHh--hcCEEEEeCCCCCCcCCCcchHHHHHHHHH
Q 025133 150 AVRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIH 216 (257)
Q Consensus 150 ~~~~~~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~D~~~~~~~~~~l~~~~~~l~ 216 (257)
..++++++|++++.. .+...+ ...++++. -..+.|+.|+|.++.++....-..+...++
T Consensus 111 D~RVH~cLYfI~pt~~~L~~~D--------i~~mk~Ls~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 111 DTRVHACLYFIPPTGHGLKPLD--------IEFMKRLSKRVNVIPVIAKADTLTPEELQAFKQRIREDLE 172 (281)
T ss_dssp ---EEEEEEEE-TTSSSS-HHH--------HHHHHHHTTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEEcCCCccchHHH--------HHHHHHhcccccEEeEEecccccCHHHHHHHHHHHHHHHH
Confidence 468999999999863 333333 12445553 245679999999998774333334444444
No 279
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.57 E-value=1.2e-07 Score=71.13 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 025133 35 TVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~ 55 (257)
++|.|..|+|||||+++|+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999963
No 280
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.57 E-value=3.7e-07 Score=76.06 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.+.||+|......+...+ ....+.+++++|......... ... +...+... ..+.+++.||+|+
T Consensus 58 i~i~~~Dt~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~i~~~~~~~~i~lv~nK~Dl 125 (215)
T PTZ00132 58 ICFNVWDTAGQEKFGGLRDGY--------YIKGQCAIIMFDVTSRITYKN-VPN---WHRDIVRVCENIPIVLVGNKVDV 125 (215)
T ss_pred EEEEEEECCCchhhhhhhHHH--------hccCCEEEEEEECcCHHHHHH-HHH---HHHHHHHhCCCCCEEEEEECccC
Confidence 446689999965443332211 123578899999986443211 100 11111111 2355678999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
...... .......+. .. ...+ .|++++.++++.+..+.
T Consensus 126 ~~~~~~----~~~~~~~~~-~~-~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 126 KDRQVK----ARQITFHRK-KN-LQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred ccccCC----HHHHHHHHH-cC-CEEEEEeCCCCCCHHHHHHHHH
Confidence 654321 122232332 22 3444 78888888887665543
No 281
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.56 E-value=4e-07 Score=71.31 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=81.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
--.+.+.|+.||||||++++|++. .+-.+++-.|- . +... +
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~----~~~~i~pt~gf----~------------Iktl-~------------------ 56 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGE----DTDTISPTLGF----Q------------IKTL-E------------------ 56 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCC----CccccCCccce----e------------eEEE-E------------------
Confidence 446889999999999999999953 32333333331 1 0000 0
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccC-CChhHHHHHH-hhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHL-SSYPEAIHQI-AFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~-~~~~~~~~ql-~~~~ 189 (257)
...+.+.+-|-.|......+.... ....+.+|+|+|.+.... ++..... ..+.. -.++ +.+.
T Consensus 57 ------~~~~~L~iwDvGGq~~lr~~W~nY--------festdglIwvvDssD~~r-~~e~~~~L~~lL~-eerlaG~~~ 120 (185)
T KOG0073|consen 57 ------YKGYTLNIWDVGGQKTLRSYWKNY--------FESTDGLIWVVDSSDRMR-MQECKQELTELLV-EERLAGAPL 120 (185)
T ss_pred ------ecceEEEEEEcCCcchhHHHHHHh--------hhccCeEEEEEECchHHH-HHHHHHHHHHHHh-hhhhcCCce
Confidence 335678899999976655544322 235689999999964322 2221110 00111 2344 4578
Q ss_pred EEEEeCCCCCCcCCCcchHHHHH--HHHHHhCCCC--EEE-EeecCCcCh
Q 025133 190 VVILNKVDLVSPERSGDSLDELE--KEIHEINSLA--HVI-RSVRCQVDL 234 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~--~~l~~~~~~a--~i~-~s~~~~~~~ 234 (257)
+++.||.|+.+.-. .+.+. -.+..+.+.. +++ -++.++.++
T Consensus 121 Lvlank~dl~~~l~----~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 121 LVLANKQDLPGALS----LEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEecCcCccccC----HHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 88999999985432 23332 2234443333 344 577777433
No 282
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.56 E-value=3.8e-06 Score=67.89 Aligned_cols=162 Identities=19% Similarity=0.185 Sum_probs=84.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCC--ce--eeeeeecCCCceeeccchhHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG--AL--VEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~--~~--~~~~~~l~~gcicc~~~~~~~~ 109 (257)
+.+..|..|+||||+.-.|...- ++++++-.|++. .+.+..+-...... .. ......-.-.|..+.....+..
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l--~~vlliD~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL--KNVVLADCDVDA-PNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVT 78 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH--hCcEEEECCCCC-CchhhhcCCCccccccceecCCceEEchhhhccccchHHHHH
Confidence 56788999999999999997654 788999988753 22111000000000 00 0000000000111111122333
Q ss_pred HHHHHHH---hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 110 ALEQLVQ---RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 110 ~l~~~~~---~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
.+.+.+. ...++|+++|||||...... .. ....+|.++.++.+....... . ......+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~d~viiDtpp~~~~~~-~~---------~l~~aD~vliv~~~~~~~~~~--~---~~~~~~l~~~~ 143 (179)
T cd03110 79 EVRKHAKEIAKAEGAELIIIDGPPGIGCPV-IA---------SLTGADAALLVTEPTPSGLHD--L---ERAVELVRHFG 143 (179)
T ss_pred HHHHHHHHhhhhcCCCEEEEECcCCCcHHH-HH---------HHHcCCEEEEEecCCcccHHH--H---HHHHHHHHHcC
Confidence 3333321 23689999999997554321 11 123468899999988542211 0 01223344445
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~ 218 (257)
.+..+|+||+|.-... ..++++.+++.
T Consensus 144 ~~~~vV~N~~~~~~~~-----~~~~~~~~~~~ 170 (179)
T cd03110 144 IPVGVVINKYDLNDEI-----AEEIEDYCEEE 170 (179)
T ss_pred CCEEEEEeCCCCCcch-----HHHHHHHHHHc
Confidence 5568899999865432 34556666654
No 283
>PRK13351 elongation factor G; Reviewed
Probab=98.56 E-value=4.4e-07 Score=88.32 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=50.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... ....+.....|.++++||+|+.
T Consensus 72 ~~~i~liDtPG~~df~~~~~--------~~l~~aD~~ilVvd~~~~~~~~~~~-----~~~~~~~~~~p~iiviNK~D~~ 138 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVE--------RSLRVLDGAVVVFDAVTGVQPQTET-----VWRQADRYGIPRLIFINKMDRV 138 (687)
T ss_pred CEEEEEEECCCcHHHHHHHH--------HHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCCEEEEEECCCCC
Confidence 56788999999865433222 1223568999999998754322211 1223344567889999999988
Q ss_pred CcCCCcchHHHHHHHH
Q 025133 200 SPERSGDSLDELEKEI 215 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l 215 (257)
..+ ..+.+++++..+
T Consensus 139 ~~~-~~~~~~~i~~~l 153 (687)
T PRK13351 139 GAD-LFKVLEDIEERF 153 (687)
T ss_pred CCC-HHHHHHHHHHHH
Confidence 753 223445554444
No 284
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.55 E-value=2.5e-07 Score=76.96 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=66.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCC--CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKH--GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~--~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
--+++.|..|+|||||+++|..... +....+.+..++......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------------- 50 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY----------------------------------- 50 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC-----------------------------------
Confidence 3578999999999999999997421 223233333333200000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~ 187 (257)
....+..++||+|..+...+.... ....+.++.++|............. +...+... ..
T Consensus 51 -------~~~~~~~~~Dt~gq~~~~~~~~~y--------~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~l~~~~~~~~ 112 (219)
T COG1100 51 -------RRNIKLQLWDTAGQEEYRSLRPEY--------YRGANGILIVYDSTLRESSDELTEE---WLEELRELAPDDV 112 (219)
T ss_pred -------CCEEEEEeecCCCHHHHHHHHHHH--------hcCCCEEEEEEecccchhhhHHHHH---HHHHHHHhCCCCc
Confidence 012447799999987655554322 1345678888887753322221110 12222222 24
Q ss_pred cCEEEEeCCCCCCcC
Q 025133 188 ADVVILNKVDLVSPE 202 (257)
Q Consensus 188 ~~vivlNK~D~~~~~ 202 (257)
+.+++.||+|+....
T Consensus 113 ~iilv~nK~Dl~~~~ 127 (219)
T COG1100 113 PILLVGNKIDLFDEQ 127 (219)
T ss_pred eEEEEecccccccch
Confidence 677888999999874
No 285
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.55 E-value=2e-07 Score=77.77 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=50.2
Q ss_pred CCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HHHhhcCEEEE
Q 025133 119 ERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQIAFADVVIL 193 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~ql~~~~vivl 193 (257)
.+..+.+|||||+.++. ...+.+. +........++.+++|+...++.......-. .+...+ ..+-.-.+||+
T Consensus 47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~-~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~--~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 47 DGRQVTVIDTPGLFDSDGSDEEIIREIK-RCLSLCSPGPHAFLLVIPLGRFTEEDREVLE--LLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp TTEEEEEEE--SSEETTEEHHHHHHHHH-HHHHHTTT-ESEEEEEEETTB-SHHHHHHHH--HHHHHHCGGGGGGEEEEE
T ss_pred cceEEEEEeCCCCCCCcccHHHHHHHHH-HHHHhccCCCeEEEEEEecCcchHHHHHHHH--HHHHHccHHHHhHhhHHh
Confidence 34668899999987642 2222221 1111123467889999999877543222100 011111 12223457788
Q ss_pred eCCCCCCcCCCcchHH-----HHHHHHHHhCCCC
Q 025133 194 NKVDLVSPERSGDSLD-----ELEKEIHEINSLA 222 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~-----~~~~~l~~~~~~a 222 (257)
+..|..........+. .+.+.+++.....
T Consensus 124 T~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 124 THADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp EEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 9999887765322222 3555566555543
No 286
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.55 E-value=3.8e-07 Score=75.40 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+-|.||+|......+.... ....+.+++|+|.......... . .+...+.+. ..|.++|.||+|+
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~--------~~~ad~~ilV~D~t~~~S~~~i-~---~w~~~i~~~~~~~piilvgNK~Dl 111 (200)
T smart00176 44 IRFNVWDTAGQEKFGGLRDGY--------YIQGQCAIIMFDVTARVTYKNV-P---NWHRDLVRVCENIPIVLCGNKVDV 111 (200)
T ss_pred EEEEEEECCCchhhhhhhHHH--------hcCCCEEEEEEECCChHHHHHH-H---HHHHHHHHhCCCCCEEEEEECccc
Confidence 446799999975443333211 2246789999999876543221 0 012222221 2467889999998
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
...... .+.+ . +.+.+. ..++ .|++.+.|+.+++..+.
T Consensus 112 ~~~~v~---~~~~-~-~~~~~~-~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 112 KDRKVK---AKSI-T-FHRKKN-LQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred ccccCC---HHHH-H-HHHHcC-CEEEEEeCCCCCCHHHHHHHHH
Confidence 643211 1222 2 222233 3444 89999999998887764
No 287
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.54 E-value=1.3e-07 Score=75.00 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=27.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
.++++|+||+|||||+|+|+ +.+.+.+...+|+
T Consensus 104 ~v~~~G~~nvGKStliN~l~----~~~~~~~~~~~g~ 136 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLR----SKKVCKVAPIPGE 136 (157)
T ss_pred EEEEEeCCCCChHHHHHHHh----cCCceeeCCCCCe
Confidence 56799999999999999999 4555677777775
No 288
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=7.3e-07 Score=81.93 Aligned_cols=157 Identities=21% Similarity=0.217 Sum_probs=97.9
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+.|++.+.|----|||||+.++-+. .+...|.|- ++.+.= . ...++..
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t------~Va~~EaGG---ITQhIG------A---~~v~~~~------------ 51 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKT------NVAAGEAGG---ITQHIG------A---YQVPLDV------------ 51 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcC------ccccccCCc---eeeEee------e---EEEEecc------------
Confidence 357899999999999999999999632 344444442 111100 0 0111100
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
...+.+.|+||||-. .|..+. .+...-.|.+++|||+..+..+.... .....+..+-|
T Consensus 52 ---------~~~~~itFiDTPGHe---AFt~mR-----aRGa~vtDIaILVVa~dDGv~pQTiE-----AI~hak~a~vP 109 (509)
T COG0532 52 ---------IKIPGITFIDTPGHE---AFTAMR-----ARGASVTDIAILVVAADDGVMPQTIE-----AINHAKAAGVP 109 (509)
T ss_pred ---------CCCceEEEEcCCcHH---HHHHHH-----hcCCccccEEEEEEEccCCcchhHHH-----HHHHHHHCCCC
Confidence 023668899999943 222211 12234468999999999877664432 23344556678
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC-------CCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN-------SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~-------~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++++||+|+.+.. ...+...+.+.. ....++ .|++++.|+++|+..++
T Consensus 110 ~iVAiNKiDk~~~n-----p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 110 IVVAINKIDKPEAN-----PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred EEEEEecccCCCCC-----HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 89999999999653 355555554432 122233 79999999999988764
No 289
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.48 E-value=1.5e-06 Score=72.95 Aligned_cols=109 Identities=9% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|......+... .....+.+++|+|............. +.....+. ..|.++|.||+|+
T Consensus 49 v~L~iwDt~G~e~~~~l~~~--------~~~~~d~illvfdis~~~Sf~~i~~~---w~~~~~~~~~~~piiLVgnK~DL 117 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPL--------AYPDSDAVLICFDISRPETLDSVLKK---WQGETQEFCPNAKVVLVGCKLDM 117 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHH--------hccCCCEEEEEEECCCHHHHHHHHHH---HHHHHHhhCCCCCEEEEEECccc
Confidence 45678999997543333221 12467899999999876432111000 11111111 2467888899999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCc-ChhhhhcCc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQV-DLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~-~~~~l~~~~ 241 (257)
...... .-..++...+.++ ......+ .|++++. ++.+++...
T Consensus 118 ~~~~~~~~~~~~~~~~pIs~e~g~~~ak~-~~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 118 RTDLATLRELSKQRLIPVTHEQGTVLAKQ-VGAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred ccchhhhhhhhhccCCccCHHHHHHHHHH-cCCCEEEEcCCCcCCcCHHHHHHHH
Confidence 653110 0011222232333 2323566 5788766 588887765
No 290
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.4e-06 Score=80.21 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=95.5
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+.|++-|.|--.=|||||+.+|-+. .+...+.|- ++.. -|. ....+++|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks------~VAA~E~GG---ITQh------IGA---F~V~~p~G----------- 200 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKS------SVAAGEAGG---ITQH------IGA---FTVTLPSG----------- 200 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhC------ceehhhcCC---ccce------ece---EEEecCCC-----------
Confidence 348899999999999999999999642 344444442 1111 001 22333333
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
-.+.|.||||-.-...+.. +...-.|.+++||-|..+..+.... .....+...-|
T Consensus 201 ------------~~iTFLDTPGHaAF~aMRa--------RGA~vtDIvVLVVAadDGVmpQT~E-----aIkhAk~A~Vp 255 (683)
T KOG1145|consen 201 ------------KSITFLDTPGHAAFSAMRA--------RGANVTDIVVLVVAADDGVMPQTLE-----AIKHAKSANVP 255 (683)
T ss_pred ------------CEEEEecCCcHHHHHHHHh--------ccCccccEEEEEEEccCCccHhHHH-----HHHHHHhcCCC
Confidence 3467999999543333321 2344568899999888766543321 12222333456
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHH-------hCCCCEEE-EeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHE-------INSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~-------~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.++.+||+|..... .+.+.+.|-. +.....++ +|+.++.|++.|.+++
T Consensus 256 iVvAinKiDkp~a~-----pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eai 311 (683)
T KOG1145|consen 256 IVVAINKIDKPGAN-----PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAI 311 (683)
T ss_pred EEEEEeccCCCCCC-----HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHH
Confidence 78899999977553 4555544433 34444555 8999999999888776
No 291
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.47 E-value=1.1e-06 Score=81.24 Aligned_cols=109 Identities=12% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHHHhhcC-EEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFAD-VVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~ql~~~~-vivlNK 195 (257)
.+..+.||||||..+..... ......+|.+++|+|+...... .....+..........++.+. ++++||
T Consensus 83 ~~~~i~liDtPGh~df~~~~--------~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK 154 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNM--------ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK 154 (447)
T ss_pred CCEEEEEEECCCHHHHHHHH--------HhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc
Confidence 35678899999954332211 1234568999999999863110 000000000122234456655 667999
Q ss_pred CCCCCc----CCCcchHHHHHHHHHHhCC---CCEEE-EeecCCcChh
Q 025133 196 VDLVSP----ERSGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLS 235 (257)
Q Consensus 196 ~D~~~~----~~~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~ 235 (257)
+|+.+. +...+.++++...+++..- ..+++ +|+..+.++.
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 998732 1122345666676766441 23444 8999988874
No 292
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.46 E-value=5.7e-07 Score=76.44 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=44.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH-HHHHHhhcCEEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQIAFADVVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~ql~~~~vivlNK~D~ 198 (257)
.-..+|-||||+.+....-.... .....-..++|.++.++|+..-.-..+... +.. ...+.....++++|-+|.
T Consensus 86 ~~~l~lwDtPG~gdg~~~D~~~r-~~~~d~l~~~DLvL~l~~~~draL~~d~~f----~~dVi~~~~~~~~i~~VtQ~D~ 160 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKDAEHR-QLYRDYLPKLDLVLWLIKADDRALGTDEDF----LRDVIILGLDKRVLFVVTQADR 160 (296)
T ss_pred ccceEEecCCCcccchhhhHHHH-HHHHHHhhhccEEEEeccCCCccccCCHHH----HHHHHHhccCceeEEEEehhhh
Confidence 34578999999998543321110 112233457889999999975332222110 011 123344677899999998
Q ss_pred CCc
Q 025133 199 VSP 201 (257)
Q Consensus 199 ~~~ 201 (257)
.-+
T Consensus 161 a~p 163 (296)
T COG3596 161 AEP 163 (296)
T ss_pred hcc
Confidence 754
No 293
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=4e-07 Score=74.45 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=73.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+-++++|+.+||||+|.-.|... ..+-.+.+.+|..... .
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~g--s~~~TvtSiepn~a~~-------------------r---------------- 78 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITG--SHRGTVTSIEPNEATY-------------------R---------------- 78 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcC--CccCeeeeeccceeeE-------------------e----------------
Confidence 34478999999999999999999753 1222455555442000 0
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-----
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----- 184 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----- 184 (257)
.+.-..-+||.||-..-...... .+.+..++..+|||||+..+....+.. .+++-+
T Consensus 79 --------~gs~~~~LVD~PGH~rlR~kl~e-----~~~~~~~akaiVFVVDSa~f~k~vrdv------aefLydil~~~ 139 (238)
T KOG0090|consen 79 --------LGSENVTLVDLPGHSRLRRKLLE-----YLKHNYSAKAIVFVVDSATFLKNVRDV------AEFLYDILLDS 139 (238)
T ss_pred --------ecCcceEEEeCCCcHHHHHHHHH-----HccccccceeEEEEEeccccchhhHHH------HHHHHHHHHhh
Confidence 11112459999996654333322 234556788999999999887665543 222211
Q ss_pred ----HhhcCEEEEeCCCCCCcCC
Q 025133 185 ----IAFADVVILNKVDLVSPER 203 (257)
Q Consensus 185 ----l~~~~vivlNK~D~~~~~~ 203 (257)
-..+.+|+-||.|+..+..
T Consensus 140 ~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 140 RVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred ccccCCCCEEEEecchhhhhcCc
Confidence 1124566789999987654
No 294
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.46 E-value=2.7e-07 Score=74.46 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=28.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
..++++|+||+|||||+|+|+ +.+.+.+.+.+|.
T Consensus 118 ~~~~~vG~pnvGKSslin~l~----~~~~~~~~~~pg~ 151 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLK----RSRACNVGATPGV 151 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHh----CcccceecCCCCe
Confidence 368999999999999999999 5566677777886
No 295
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.43 E-value=5.6e-07 Score=85.14 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|.+|+||||++|.|+.
T Consensus 120 rIvLVGKTGVGKSSLINSILG 140 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFG 140 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999994
No 296
>PRK12740 elongation factor G; Reviewed
Probab=98.43 E-value=1.2e-06 Score=85.10 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=45.3
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~ 198 (257)
.+.++.||||||..+...... .....+|.+++|+|+.......... ........+.+.++++||+|+
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~--------~~l~~aD~vllvvd~~~~~~~~~~~-----~~~~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVE--------RALRVLDGAVVVVCAVGGVEPQTET-----VWRQAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHH--------HHHHHhCeEEEEEeCCCCcCHHHHH-----HHHHHHHcCCCEEEEEECCCC
Confidence 467899999999865322211 1233579999999998754332211 122333446788999999998
Q ss_pred CCc
Q 025133 199 VSP 201 (257)
Q Consensus 199 ~~~ 201 (257)
...
T Consensus 125 ~~~ 127 (668)
T PRK12740 125 AGA 127 (668)
T ss_pred CCC
Confidence 864
No 297
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.42 E-value=3.5e-07 Score=90.71 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
++.+-||||||..+..... ......+|.+++|+|+..+....... +.......+.|.++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~--------~~al~~~D~ailVvda~~Gv~~~t~~-----~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEV--------TAALRITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHH--------HHHHhhcCEEEEEEECCCCCcccHHH-----HHHHHHHCCCCEEEEEECCccc
Confidence 3445699999976543222 12334579999999999765433321 2223334456889999999998
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.38 E-value=8.5e-07 Score=86.81 Aligned_cols=68 Identities=21% Similarity=0.169 Sum_probs=43.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
++.+.||||||..+...... .....+|.+++|+|+..+....... +.....+.+.+.++++||+|..
T Consensus 86 ~~~i~liDtPG~~df~~~~~--------~~l~~~D~avlVvda~~g~~~~t~~-----~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 86 EYLINLIDTPGHVDFGGDVT--------RAMRAVDGAIVVVDAVEGVMPQTET-----VLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cEEEEEEcCCCccChHHHHH--------HHHHhcCEEEEEEECCCCCCccHHH-----HHHHHHHcCCCeEEEEECchhh
Confidence 46678999999877532221 2234579999999998764432211 1222233455779999999987
Q ss_pred C
Q 025133 200 S 200 (257)
Q Consensus 200 ~ 200 (257)
.
T Consensus 153 ~ 153 (731)
T PRK07560 153 I 153 (731)
T ss_pred c
Confidence 4
No 299
>COG2403 Predicted GTPase [General function prediction only]
Probab=98.38 E-value=4e-06 Score=73.89 Aligned_cols=192 Identities=25% Similarity=0.297 Sum_probs=114.7
Q ss_pred cccCcccCCCcceeEEEEEec-CCCcHHHHHHHHHc--cCCCCeEEEEecCC---Ccccccchhhhhc----CCCCceee
Q 025133 20 EFSNSHENDDVSVGVTVITGF-LGAGKSTLVNYILN--GKHGKRIAVILNEF---GEEIGVERAMINE----GEGGALVE 89 (257)
Q Consensus 20 ~~~~~~~~~~~~~~vv~i~G~-~gsGKSTli~~Ll~--~~~~~~v~ii~~~~---g~~~~~d~~~~~~----~~~~~~~~ 89 (257)
.+++..-......|++.|+|. .|+|||+.-+.+.+ +..|.+++++.+-. |.++......+.. +......+
T Consensus 114 ~~gP~et~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~e 193 (449)
T COG2403 114 ELGPKETMLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDE 193 (449)
T ss_pred EeCccHHhhhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCceecCCchhhhHHHHhCHhhccccccchh
Confidence 345544456678899988885 89999998887765 24588998888631 1111111111111 11011111
Q ss_pred eeeec-----CCCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc
Q 025133 90 EWVEL-----ANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 90 ~~~~l-----~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
...++ .++.. .-..++...+.+-.. -.|+|+.|-.|-.-| ....|.-|.|+||.+
T Consensus 194 ereeye~~I~tg~~v--lAGvdy~~vlke~~~---~aD~IlwdGgnndfP---------------fvkpd~~Ivvvda~r 253 (449)
T COG2403 194 EREEYESYIPTGGGV--LAGVDYGTVLKEGEK---EADFILWDGGNNDFP---------------FVKPDLHIVVVDALR 253 (449)
T ss_pred hHHHHhhccccccce--EeeeeHHHHHHHHhh---hccEEEEeCCCCCCC---------------cccCCeeEEEecCCC
Confidence 10000 11111 112345555544332 348888886665433 234688899999998
Q ss_pred hHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEe--ecCCcChhhhhcCcc
Q 025133 165 LLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS--VRCQVDLSEVLNCRA 242 (257)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s--~~~~~~~~~l~~~~~ 242 (257)
....+..+... ..++.||++++||+|....++ +.++.+.++++||.|.|+.+ ...-....++-+...
T Consensus 254 pg~ei~~~pGe-------~~irlAD~VIItkveea~~~k----vrkI~~~I~~iNP~A~Vi~~~~~~~~~~~~~ieGKrv 322 (449)
T COG2403 254 PGEEIGSFPGE-------LRIRLADLVIITKVEEAMAEK----VRKIVRNIEEINPKAEVILAASVFRPDPPEDIEGKRV 322 (449)
T ss_pred CchhhccCCCc-------eeeeeccEEEEecccccchHH----HHHHHHHHHhhCCCcEEEecccccccCChhhcCCcEE
Confidence 66655543221 257889999999999988764 78999999999999999865 333344555555543
No 300
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.38 E-value=4.3e-07 Score=80.47 Aligned_cols=33 Identities=39% Similarity=0.592 Sum_probs=30.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
.++|+|.||+||||+||+|+ +++.+.+++.||.
T Consensus 134 ~v~vvG~PNVGKSslIN~L~----~k~~~~~s~~PG~ 166 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLL----GKKVAKTSNRPGT 166 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHh----cccceeeCCCCce
Confidence 49999999999999999999 6777999999996
No 301
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.37 E-value=1.4e-06 Score=85.06 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=44.8
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 197 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D 197 (257)
..++++.|+||||..+...... .....+|.+++|+|+.......... +.....+...+.++++||+|
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~--------~al~~aD~~llVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD 149 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVT--------RAMRAVDGAIVVVCAVEGVMPQTET-----VLRQALKENVKPVLFINKVD 149 (720)
T ss_pred CCceEEEEEeCCCccccHHHHH--------HHHHhcCEEEEEEecCCCCCccHHH-----HHHHHHHcCCCEEEEEEChh
Confidence 3467889999999876432221 2234579999999998654321110 11122233457789999999
Q ss_pred CCCc
Q 025133 198 LVSP 201 (257)
Q Consensus 198 ~~~~ 201 (257)
....
T Consensus 150 ~~~~ 153 (720)
T TIGR00490 150 RLIN 153 (720)
T ss_pred cccc
Confidence 8753
No 302
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.37 E-value=1e-06 Score=70.02 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=33.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+++++.|+|+.|||||||+.+|+.. .+|.+++++.+...
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 4689999999999999999999874 56899999987644
No 303
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.37 E-value=1.5e-06 Score=72.94 Aligned_cols=88 Identities=23% Similarity=0.218 Sum_probs=59.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
..+++.|||.+|||||+..+..- ..+.....+.+-||. + +
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGv-i--------------------~---------------- 105 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGV-I--------------------H---------------- 105 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecce-E--------------------E----------------
Confidence 47999999999999999999741 223344444455552 1 1
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 166 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~ 166 (257)
.++..+.++|.||+.+......... .+.......+|.++.|+||+...
T Consensus 106 --------y~ga~IQllDLPGIieGAsqgkGRG-RQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 106 --------YNGANIQLLDLPGIIEGASQGKGRG-RQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred --------ecCceEEEecCcccccccccCCCCC-ceEEEEeecccEEEEEecCCcch
Confidence 3345677999999887655443222 23445566789999999998643
No 304
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.36 E-value=3.2e-07 Score=77.86 Aligned_cols=163 Identities=15% Similarity=0.068 Sum_probs=95.1
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEec-CCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILN-EFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~-~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
..+.|.+++.|.+|+|||+|||.+++.. .++-.+. .+|.+-.+. |
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k---~~~~t~k~K~g~Tq~in-------------------------~------ 178 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVK---NIADTSKSKNGKTQAIN-------------------------H------ 178 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhh---hhhhhcCCCCccceeee-------------------------e------
Confidence 4566899999999999999999998631 1111111 333210000 0
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCC-----CC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 108 VQALEQLVQRKERLDHILLETTGL-----AN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~-----~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
..-+..+.+||.||+ .. +.++.. +...++-+...+-.++.++|++-.....|.. +..
T Consensus 179 ---------f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~--~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-----~i~ 242 (320)
T KOG2486|consen 179 ---------FHVGKSWYEVDLPGYGRAGYGFELPADWDK--FTKSYLLERENLVRVFLLVDASVPIQPTDNP-----EIA 242 (320)
T ss_pred ---------eeccceEEEEecCCcccccCCccCcchHhH--hHHHHHHhhhhhheeeeeeeccCCCCCCChH-----HHH
Confidence 012356889999993 32 222221 1123344445667889999999877776654 456
Q ss_pred HHHHHhhcCEEEEeCCCCCCcCCC--cchHHH----HHHHHHHhCCCC-E-EEEeecCCcChhhhhcCc
Q 025133 181 AIHQIAFADVVILNKVDLVSPERS--GDSLDE----LEKEIHEINSLA-H-VIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~~~~~--~~~l~~----~~~~l~~~~~~a-~-i~~s~~~~~~~~~l~~~~ 241 (257)
++.+..-|..+|+||+|....-.. .+-... +....+...+.. + +.+|+.+..|.+.|+=.+
T Consensus 243 ~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i 311 (320)
T KOG2486|consen 243 WLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHI 311 (320)
T ss_pred HHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeeh
Confidence 777888899999999998754220 000111 222222222111 1 347888888887765443
No 305
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.1e-06 Score=75.02 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=72.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-hcCEEEEeCCC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVD 197 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~-~~~vivlNK~D 197 (257)
.+.++-+||+||-.. ++. ..+....-+|..++|+|+..+.+..... ...+.++. ..-++|+||+|
T Consensus 68 e~lq~tlvDCPGHas---LIR-----tiiggaqiiDlm~lviDv~kG~QtQtAE------cLiig~~~c~klvvvinkid 133 (522)
T KOG0461|consen 68 EQLQFTLVDCPGHAS---LIR-----TIIGGAQIIDLMILVIDVQKGKQTQTAE------CLIIGELLCKKLVVVINKID 133 (522)
T ss_pred ccceeEEEeCCCcHH---HHH-----HHHhhhheeeeeeEEEehhcccccccch------hhhhhhhhccceEEEEeccc
Confidence 456789999999542 222 2234455689999999998766543211 12334443 34678899999
Q ss_pred CCCcCCCcchHHHHHHHHHH----h--CCCCEEE-EeecCC----cChhhh---hcCccCCCCCCCcc
Q 025133 198 LVSPERSGDSLDELEKEIHE----I--NSLAHVI-RSVRCQ----VDLSEV---LNCRAYDATVNPIK 251 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~----~--~~~a~i~-~s~~~~----~~~~~l---~~~~~~~~~~~~~~ 251 (257)
...+.++...++.....+++ . ..+++|+ +|+..+ ..+.+| +....+-+.+.|.+
T Consensus 134 ~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~g 201 (522)
T KOG0461|consen 134 VLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEG 201 (522)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCC
Confidence 99886665555555444433 2 2446777 677776 444444 44445656665543
No 306
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=4e-06 Score=67.70 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=91.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
-=++|.|-.++||||+|+++.-. ...+.++.++|+|-. + + ...+.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd-------~fd~~YqATIGiDFl--s--------k-t~~l~----------------- 67 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYD-------KFDNTYQATIGIDFL--S--------K-TMYLE----------------- 67 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHh-------hhcccccceeeeEEE--E--------E-EEEEc-----------------
Confidence 34788999999999999999742 122334444555421 1 0 11111
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC---
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD--- 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~--- 189 (257)
...+.+.+=||.|.-...-++-.. .....++|.|.|...-..-..- .++.+-+..-+-++
T Consensus 68 -----d~~vrLQlWDTAGQERFrslipsY--------~Rds~vaviVyDit~~~Sfe~t----~kWi~dv~~e~gs~~vi 130 (221)
T KOG0094|consen 68 -----DRTVRLQLWDTAGQERFRSLIPSY--------IRDSSVAVIVYDITDRNSFENT----SKWIEDVRRERGSDDVI 130 (221)
T ss_pred -----CcEEEEEEEecccHHHHhhhhhhh--------ccCCeEEEEEEeccccchHHHH----HHHHHHHHhccCCCceE
Confidence 123456789999975544333211 1245678888887754332110 01222222222332
Q ss_pred -EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCCC
Q 025133 190 -VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATVN 248 (257)
Q Consensus 190 -vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~ 248 (257)
++|-||.||.+..+. ..++-...-++++ +..+ .|++.+.++..++..+...+.++
T Consensus 131 I~LVGnKtDL~dkrqv--s~eEg~~kAkel~--a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKRQV--SIEEGERKAKELN--AEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred EEEEcccccccchhhh--hHHHHHHHHHHhC--cEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 334499999988653 3333334444444 3444 78999999999998887666554
No 307
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.30 E-value=6.8e-07 Score=73.55 Aligned_cols=44 Identities=30% Similarity=0.466 Sum_probs=39.8
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|+.|+|++..++++.+.. +++|.||+|||||||++.|-.
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 68999999999999999887665 799999999999999999964
No 308
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.28 E-value=1.1e-06 Score=76.43 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=32.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CC-C-CeEEEEecCCCc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KH-G-KRIAVILNEFGE 70 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~-~-~~v~ii~~~~g~ 70 (257)
...+++|+|++|+||||++.+|... .. + .+++++..|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 3458999999999999999999764 22 4 899999998753
No 309
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=1.6e-06 Score=78.52 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=69.0
Q ss_pred CCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh--cCEEEEeCC
Q 025133 120 RLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--ADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~--~~vivlNK~ 196 (257)
.+.+-||||||-.+.. ++. +....+...++||||+++...... ...+.-++. -.+.|+||+
T Consensus 75 ~Y~lnlIDTPGHVDFsYEVS---------RSLAACEGalLvVDAsQGveAQTl-------AN~YlAle~~LeIiPViNKI 138 (603)
T COG0481 75 TYVLNLIDTPGHVDFSYEVS---------RSLAACEGALLVVDASQGVEAQTL-------ANVYLALENNLEIIPVLNKI 138 (603)
T ss_pred EEEEEEcCCCCccceEEEeh---------hhHhhCCCcEEEEECccchHHHHH-------HHHHHHHHcCcEEEEeeecc
Confidence 4556789999966542 111 233457889999999998775442 222222322 346699999
Q ss_pred CCCCcCCCcchHHHHHHHHHHh---CCCCEEEEeecCCcChhhhhcCccCC
Q 025133 197 DLVSPERSGDSLDELEKEIHEI---NSLAHVIRSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~~s~~~~~~~~~l~~~~~~~ 244 (257)
|+..++ .++++..++.+ ...-.+..|+++++|+++++.++...
T Consensus 139 DLP~Ad-----pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 139 DLPAAD-----PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred cCCCCC-----HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhh
Confidence 998875 46666666553 23333558999999999999988544
No 310
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.26 E-value=1.7e-06 Score=67.41 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=25.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
.+++.|.+|+||||++|+|+. .+...++..+|.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~----~~~~~~~~~~~~ 117 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG----KKKVSVSATPGK 117 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC----CCceeeCCCCCc
Confidence 688999999999999999994 333445555554
No 311
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.24 E-value=3e-06 Score=76.26 Aligned_cols=92 Identities=18% Similarity=0.255 Sum_probs=57.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~-~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
-+.++|.+|+|||||+|+|++... ..+.+.++..||++.+... ..+
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~---------------~~~------------------ 202 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE---------------IPL------------------ 202 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE---------------EEe------------------
Confidence 689999999999999999997532 2245666777886332110 010
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccc--cccccceeeeeEEEEEeccch
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLD--DQLESAVRLDSIITVVDAKNL 165 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~--~~~~~~~~~~~vi~vvDa~~~ 165 (257)
+.++.++||||+..+..+...+..+ ..+.....+....+.+|..+.
T Consensus 203 -------~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~ 250 (360)
T TIGR03597 203 -------DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQT 250 (360)
T ss_pred -------CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCE
Confidence 1235699999998776555433210 012233456677788877653
No 312
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=2.8e-06 Score=77.01 Aligned_cols=154 Identities=25% Similarity=0.270 Sum_probs=88.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccc------hhhhh-cCCCCceeeeeeec-CCCcee
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVE------RAMIN-EGEGGALVEEWVEL-ANGCIC 100 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d------~~~~~-~~~~~~~~~~~~~l-~~gcic 100 (257)
+.=++.|+|-.|+||||-+.++.=. .++.++.|..+|+-. .|.- ...+. .+. .+ +++ ..|
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFR-sGAvEQLrtHv~rl~~l~~--~~----v~lfekG--- 446 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFR-SGAVEQLRTHVERLSALHG--TM----VELFEKG--- 446 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchh-hhHHHHHHHHHHHHHHhcc--ch----hHHHhhh---
Confidence 3347899999999999999998532 347899999998643 2211 11111 110 00 011 000
Q ss_pred eccchhHHHHHHHHH-HhcCCCCEEEEecCC-CCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 101 CTVKHSLVQALEQLV-QRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 101 c~~~~~~~~~l~~~~-~~~~~~~~ilIDt~G-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
+-.+.-.-+...+. .+..++|+|+|||.| ++...+++..+. .+...-+.|.+++|-.|--+....+... .+
T Consensus 447 -Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~---k~~~~~~pd~i~~vgealvg~dsv~q~~---~f 519 (587)
T KOG0781|consen 447 -YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLA---KLIKVNKPDLILFVGEALVGNDSVDQLK---KF 519 (587)
T ss_pred -cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHH---HHHhcCCCceEEEehhhhhCcHHHHHHH---HH
Confidence 01111111111111 236789999999999 666667765442 3445667899999988765544333211 01
Q ss_pred hHHHH---HHhhcCEEEEeCCCCCCc
Q 025133 179 PEAIH---QIAFADVVILNKVDLVSP 201 (257)
Q Consensus 179 ~~~~~---ql~~~~vivlNK~D~~~~ 201 (257)
-..+. +-+.-|-++++|+|.+++
T Consensus 520 n~al~~~~~~r~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 520 NRALADHSTPRLIDGILLTKFDTVDD 545 (587)
T ss_pred HHHHhcCCCccccceEEEEeccchhh
Confidence 11221 223458999999998875
No 313
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=2.1e-05 Score=70.45 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=59.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhh--hccCCChhHHHHHHhhc-CEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~ql~~~-~vivlNK 195 (257)
..+.+-++|+||-. .+... .+...-.+|..|+||||......... ..+-..-.-...-++.. .++++||
T Consensus 83 ~k~~~tIiDaPGHr---dFvkn-----mItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNK 154 (428)
T COG5256 83 DKYNFTIIDAPGHR---DFVKN-----MITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNK 154 (428)
T ss_pred CCceEEEeeCCchH---HHHHH-----hhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEc
Confidence 45678899999922 22211 12345578999999999976321110 00000011112223333 4667899
Q ss_pred CCCCCcCCC--cchHHHHHHHHHHh--CCC-CEEE-EeecCCcChhhhh
Q 025133 196 VDLVSPERS--GDSLDELEKEIHEI--NSL-AHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 196 ~D~~~~~~~--~~~l~~~~~~l~~~--~~~-a~i~-~s~~~~~~~~~l~ 238 (257)
+|.++-++- .+...++...++.. ++. .+++ +|++.|.++.+.-
T Consensus 155 MD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 155 MDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 999974431 12233333322232 332 3344 8999998886554
No 314
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.22 E-value=7.8e-07 Score=70.63 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|.+|+|||||+|.|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 79999999999999999999964
No 315
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.22 E-value=1.7e-06 Score=75.58 Aligned_cols=34 Identities=41% Similarity=0.466 Sum_probs=27.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
..++++|.||+||||++|+|. +.+.+.+.+.+|.
T Consensus 122 ~~~~~~G~pnvGKSsliN~l~----~~~~~~~~~~~g~ 155 (287)
T PRK09563 122 IRAMIIGIPNVGKSTLINRLA----GKKIAKTGNRPGV 155 (287)
T ss_pred eEEEEECCCCCCHHHHHHHHh----cCCccccCCCCCe
Confidence 468999999999999999999 4555566667775
No 316
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.21 E-value=2.7e-06 Score=71.57 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.5
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++.+|.|+|++++|||||+|.|+.
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~ 29 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFG 29 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhC
Confidence 45678999999999999999999995
No 317
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.20 E-value=6.5e-06 Score=73.61 Aligned_cols=133 Identities=24% Similarity=0.322 Sum_probs=75.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-CCCcee-eeeeecCCCceeec---
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALV-EEWVELANGCICCT--- 102 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~-~~~~~l~~gcicc~--- 102 (257)
...+++++.|+-+||||||...|++. .+|.+++++..|+|...-.....++.. ...... -...+...+|..-+
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP 150 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISP 150 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccCC
Confidence 35679999999999999999999986 458899999999985211111112110 000000 01111122222211
Q ss_pred --cchhHHHHHHHHHHh-cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch
Q 025133 103 --VKHSLVQALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 165 (257)
Q Consensus 103 --~~~~~~~~l~~~~~~-~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~ 165 (257)
..........++... ....++++|||+|+.....-++. ...+....+.+.++++=++...
T Consensus 151 ~~~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~el---k~~li~~ikP~~Ii~l~~~~~~ 213 (398)
T COG1341 151 QGFPGRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLEL---KRALIDAIKPDLIIALERANEL 213 (398)
T ss_pred CCChHHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHH---HHHHHhhcCCCEEEEecccccc
Confidence 223344444444432 23479999999998766333221 1233455666777777666543
No 318
>PRK12289 GTPase RsgA; Reviewed
Probab=98.20 E-value=2.9e-06 Score=75.95 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++|+|||||||+|+.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcC
Confidence 4689999999999999999994
No 319
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.19 E-value=9.4e-06 Score=71.65 Aligned_cols=60 Identities=12% Similarity=0.281 Sum_probs=35.9
Q ss_pred ceeeeeEEEEEeccc-hHHHHhhhccCCChhHHHHHHh-hc-CEEEEeCCCCCCcCCCcchHHHHHHHHHH
Q 025133 150 AVRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIA-FA-DVVILNKVDLVSPERSGDSLDELEKEIHE 217 (257)
Q Consensus 150 ~~~~~~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~ql~-~~-~vivlNK~D~~~~~~~~~~l~~~~~~l~~ 217 (257)
.-++++++|.+-+.. .+..++ .+.+..+. .+ .+-|+-|+|.++.+++...-+.+.+.+..
T Consensus 131 D~RVH~cLYFI~Ptgh~l~~~D--------Ie~Mk~ls~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~ 193 (373)
T COG5019 131 DTRVHACLYFIRPTGHGLKPLD--------IEAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDLEQ 193 (373)
T ss_pred cCceEEEEEEecCCCCCCCHHH--------HHHHHHHhcccCeeeeeeccccCCHHHHHHHHHHHHHHHHH
Confidence 458889999998753 333333 12344443 33 45599999999988743333344444443
No 320
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.1e-05 Score=76.00 Aligned_cols=86 Identities=24% Similarity=0.364 Sum_probs=53.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE-EEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV-ILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi-vlNK~D~~ 199 (257)
.|+++||.||+.-.......+ .+....+|++|+|+.|.+-...-... +.....+ +.|.++ +.||+|..
T Consensus 206 nDivliDsPGld~~se~tswi-----d~~cldaDVfVlV~NaEntlt~sek~-----Ff~~vs~-~KpniFIlnnkwDas 274 (749)
T KOG0448|consen 206 NDIVLIDSPGLDVDSELTSWI-----DSFCLDADVFVLVVNAENTLTLSEKQ-----FFHKVSE-EKPNIFILNNKWDAS 274 (749)
T ss_pred ccceeccCCCCCCchhhhHHH-----HHHhhcCCeEEEEecCccHhHHHHHH-----HHHHhhc-cCCcEEEEechhhhh
Confidence 389999999987665544322 13346789999999999765532211 1111122 256555 55788998
Q ss_pred CcCCCcchHHHHHHHHHHhC
Q 025133 200 SPERSGDSLDELEKEIHEIN 219 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~ 219 (257)
..++ +..+.+...+..+-
T Consensus 275 ase~--ec~e~V~~Qi~eL~ 292 (749)
T KOG0448|consen 275 ASEP--ECKEDVLKQIHELS 292 (749)
T ss_pred cccH--HHHHHHHHHHHhcC
Confidence 7765 45666666655543
No 321
>PRK12288 GTPase RsgA; Reviewed
Probab=98.18 E-value=3.5e-06 Score=75.33 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++|+|.+|+|||||||+|+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~ 227 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLP 227 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcc
Confidence 689999999999999999995
No 322
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.17 E-value=1.7e-06 Score=73.65 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=40.1
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++++|+.+.|+++..+.+.++. ++.|.||+|||||||++.|.+
T Consensus 1 ~~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CeeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 367899999999999988877664 799999999999999999986
No 323
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.17 E-value=2.8e-06 Score=67.12 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...++++|.+|+||||++|.|+.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~ 122 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLN 122 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHc
Confidence 456789999999999999999995
No 324
>PRK13796 GTPase YqeH; Provisional
Probab=98.16 E-value=2.9e-06 Score=76.47 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=29.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCC-CeEEEEecCCCcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEE 71 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~-~~v~ii~~~~g~~ 71 (257)
.+.++|.+|+|||||+|+|+....+ .+.+.++.-||+|
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT 200 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT 200 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc
Confidence 5789999999999999999964322 2445567778863
No 325
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=8.5e-07 Score=76.78 Aligned_cols=110 Identities=18% Similarity=0.291 Sum_probs=71.2
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch-HHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLVS 200 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~~~ 200 (257)
+-|||.||-. .++. ..+....-.|..++|+.|..- .++... . -...+.-+..-+ +++-||+|+++
T Consensus 88 VSfVDaPGHe---~LMA-----TMLsGAAlMDgAlLvIaANEpcPQPQT~-E----Hl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 88 VSFVDAPGHE---TLMA-----TMLSGAALMDGALLVIAANEPCPQPQTR-E----HLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred EEEeeCCchH---HHHH-----HHhcchhhhcceEEEEecCCCCCCCchH-H----HHHHHhhhccceEEEEecccceec
Confidence 4599999932 1111 122334446889999998743 222111 0 112233344444 55679999999
Q ss_pred cCCCcchHHHHHHHHHH-hCCCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 201 PERSGDSLDELEKEIHE-INSLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~-~~~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
.++..+.+++++++++. +..+++|+ +|+..+.+++.|++.+..-.
T Consensus 155 ~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 155 RERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 98877778888888876 45677887 89999999999998874433
No 326
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.15 E-value=3e-05 Score=63.77 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=60.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|.||+|.... +. .. ....++.+++|+|....... +.... .+...+.+. ..|.++|.||+|+
T Consensus 66 v~l~iwDTaG~~~~--~~-----~~---~~~~ad~iilv~d~t~~~Sf-~~~~~--~w~~~i~~~~~~~piilvgNK~DL 132 (195)
T cd01873 66 VSLRLWDTFGDHDK--DR-----RF---AYGRSDVVLLCFSIASPNSL-RNVKT--MWYPEIRHFCPRVPVILVGCKLDL 132 (195)
T ss_pred EEEEEEeCCCChhh--hh-----cc---cCCCCCEEEEEEECCChhHH-HHHHH--HHHHHHHHhCCCCCEEEEEEchhc
Confidence 45779999998532 11 01 13467899999998765432 11100 011222221 2466888999998
Q ss_pred CCcC-----------------CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPE-----------------RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~-----------------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.... ...-..++.+++.++.+ ++.+ .|++++.|+++++...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~--~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 133 RYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG--IPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred cccccchhhhcccccccccccCCccCHHHHHHHHHHhC--CEEEEcCCCCCCCHHHHHHHH
Confidence 6420 01112344445444443 4555 7999999999988654
No 327
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.13 E-value=2.7e-06 Score=69.52 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+.++|.+|+|||||+|+|+..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999864
No 328
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.12 E-value=3.9e-06 Score=76.71 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=32.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCccc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI 72 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~ 72 (257)
..-.|+++|+||+||||+||+|. |.|..-++.-||.|-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLv----G~KkVsVS~TPGkTK 350 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALV----GRKKVSVSSTPGKTK 350 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHh----cCceeeeecCCCCcc
Confidence 35679999999999999999999 677777888888633
No 329
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=98.11 E-value=7.7e-05 Score=59.71 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=74.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+.+..+..|+||||+.-.|... ..|+++.++..|++. ...... ..+. .....+...+
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~-~~~~~~--~~~~------------------~~~~~l~~~~ 60 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG-PSIPKM--WRGP------------------MKMGAIKQFL 60 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC-CCchHH--HhCc------------------chHHHHHHHH
Confidence 4567788999999999998653 568999999988764 111110 0000 0111222222
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CE
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DV 190 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~v 190 (257)
..+. ..++|+|+||||+........ .. .....|.+++++.+.......-. .+...+.+.+.+ ..
T Consensus 61 ~~~~--~~~yD~VIiD~pp~~~~~~~~-~~-------~~~~ad~viiV~~p~~~s~~~~~-----~~~~~l~~~~~~~~g 125 (169)
T cd02037 61 TDVD--WGELDYLVIDMPPGTGDEHLT-LA-------QSLPIDGAVIVTTPQEVALDDVR-----KAIDMFKKVNIPILG 125 (169)
T ss_pred HHhh--cCCCCEEEEeCCCCCcHHHHH-HH-------hccCCCeEEEEECCchhhHHHHH-----HHHHHHHhcCCCeEE
Confidence 2221 357999999999965432221 11 01346889999988754322110 123344454443 35
Q ss_pred EEEeCCCCC
Q 025133 191 VILNKVDLV 199 (257)
Q Consensus 191 ivlNK~D~~ 199 (257)
+|+|+.+..
T Consensus 126 vv~N~~~~~ 134 (169)
T cd02037 126 VVENMSYFV 134 (169)
T ss_pred EEEcCCccc
Confidence 789998754
No 330
>PLN00023 GTP-binding protein; Provisional
Probab=98.11 E-value=3.2e-05 Score=68.13 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---------------
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--------------- 185 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--------------- 185 (257)
..+-|.||+|......+...+ ...++.+|+|+|.+.-... .... .+...+.+.
T Consensus 83 v~LqIWDTAGqErfrsL~~~y--------yr~AdgiILVyDITdr~SF-enL~---kWl~eI~~~~~~s~p~~s~~~~~~ 150 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLF--------YSQINGVIFVHDLSQRRTK-TSLQ---KWASEVAATGTFSAPLGSGGPGGL 150 (334)
T ss_pred EEEEEEECCCChhhhhhhHHh--------ccCCCEEEEEEeCCCHHHH-HHHH---HHHHHHHHhcccccccccccccCC
Confidence 446789999976554443322 2347899999998874432 1111 122222222
Q ss_pred hhcCEEEEeCCCCCCcCCCc----chHHHHHHHHHH
Q 025133 186 AFADVVILNKVDLVSPERSG----DSLDELEKEIHE 217 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~----~~l~~~~~~l~~ 217 (257)
..+.+||.||+|+...+... ...+..+++.++
T Consensus 151 ~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~ 186 (334)
T PLN00023 151 PVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEK 186 (334)
T ss_pred CCcEEEEEECccccccccccccccccHHHHHHHHHH
Confidence 13567888999997653210 124555565555
No 331
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.10 E-value=4.3e-06 Score=72.40 Aligned_cols=38 Identities=34% Similarity=0.503 Sum_probs=27.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g 69 (257)
.-.+.++.|.+|+|||||+|+|+... ..+++-|+...|
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~-~~~t~eIS~~~~ 200 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPEL-NQKTGEISEKLG 200 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchh-hhhhhhhcccCC
Confidence 44589999999999999999998531 344555555543
No 332
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=3.4e-06 Score=71.60 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=40.1
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++++|+++.|++.+++.+.+.. +++++||+|||||||++.++.
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999976677777664 799999999999999999986
No 333
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.09 E-value=7.2e-06 Score=69.17 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc--chHHHHhhhccCCChhHHHHHHh--hcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK--NLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~--~~~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~ 196 (257)
..+-+.|.||.....+..-.. ..-.-...+.++|||+|+. .+...+.... .....+.+.. ....+.+.|+
T Consensus 48 ~~l~iwD~pGq~~~~~~~~~~---~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~---~~i~~l~~~sp~~~v~vfiHK~ 121 (232)
T PF04670_consen 48 LPLNIWDCPGQDDFMENYFNS---QREEIFSNVGVLIYVFDAQSDDYDEDLAYLS---DCIEALRQYSPNIKVFVFIHKM 121 (232)
T ss_dssp CEEEEEEE-SSCSTTHTTHTC---CHHHHHCTESEEEEEEETT-STCHHHHHHHH---HHHHHHHHHSTT-EEEEEEE-C
T ss_pred cEEEEEEcCCccccccccccc---cHHHHHhccCEEEEEEEcccccHHHHHHHHH---HHHHHHHHhCCCCeEEEEEeec
Confidence 457799999976543221000 0001124578999999998 3333333221 0122222321 1235678999
Q ss_pred CCCCcCCCcchHHHHHHHHHH----hCCC-CEEEEeecCCcCh
Q 025133 197 DLVSPERSGDSLDELEKEIHE----INSL-AHVIRSVRCQVDL 234 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~----~~~~-a~i~~s~~~~~~~ 234 (257)
|+++++.+......+.+.+.. .... ...+.++-....+
T Consensus 122 D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~Sl 164 (232)
T PF04670_consen 122 DLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDESL 164 (232)
T ss_dssp CCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTSTHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCcHH
Confidence 999876654444444444433 2222 3455555554433
No 334
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.09 E-value=5.1e-06 Score=69.26 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=42.4
Q ss_pred CCCCCCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 3 DEEEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++++.+++++++++.|+++..+.+.+.- +++|+|++|+|||||++.|..
T Consensus 3 ~~~~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 3 EPLHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred cCCCCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3445555679999999999887766666554 799999999999999999985
No 335
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.09 E-value=4e-06 Score=72.76 Aligned_cols=34 Identities=35% Similarity=0.438 Sum_probs=26.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
..++++|.||+||||++|+|.+ .+.+.+...+|.
T Consensus 119 ~~~~~vG~~nvGKSslin~l~~----~~~~~~~~~~g~ 152 (276)
T TIGR03596 119 IRAMIVGIPNVGKSTLINRLAG----KKVAKVGNRPGV 152 (276)
T ss_pred eEEEEECCCCCCHHHHHHHHhC----CCccccCCCCCe
Confidence 4589999999999999999984 444555666664
No 336
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.06 E-value=5.7e-06 Score=74.08 Aligned_cols=102 Identities=21% Similarity=0.143 Sum_probs=59.0
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
++|+|+||+|||||+|+|.+.. .+-+.+-|.++.... .|-+ ...+.-...|..+
T Consensus 5 ~GivGlPn~GKSTlfnaLT~~~----~~~~a~ypftTi~p~--------------------~g~v--~v~d~r~d~L~~~ 58 (368)
T TIGR00092 5 GGIVGLPNVGKSTLFAATTNLL----GNEAANPPFTTIEPN--------------------AGVV--NPSDPRLDLLAIY 58 (368)
T ss_pred EEEECCCCCChHHHHHHHhCCC----ccccCCCCCCCCCCc--------------------eeEE--EechhHHHHHHHH
Confidence 6899999999999999998532 212233233211110 0000 1122223334444
Q ss_pred HH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 115 VQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 115 ~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
.. +.....+.++|.||+.......+.+. ...+.+...+|.+++|+|+.
T Consensus 59 ~~~~~~~~a~i~~~DiaGlv~gAs~g~Glg-n~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 59 IKPEKVPPTTTEFVDIAGLVGGASKGEGLG-NQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hCCcCcCCceEEEEeccccccchhcccCcc-hHHHHHHHhCCEEEEEEeCC
Confidence 43 12244789999999887654333222 23456677899999999985
No 337
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.05 E-value=4e-05 Score=63.45 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHHc
Q 025133 35 TVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|-.|+|||||++.++.
T Consensus 3 IvlvGd~gVGKTSLi~~~~~ 22 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICK 22 (202)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999986
No 338
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=5.6e-06 Score=68.13 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=41.2
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...+++++++...|+++.++.+..+. |+++.||+|+|||||++.|-+
T Consensus 4 ~~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 4 KIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ccceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 45689999999999999998877554 899999999999999999854
No 339
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=5.8e-06 Score=74.45 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=71.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+.-.-|||.||.-+.- . ..+....-+|..++|||+..+....... ....++.+.... ++|+||+|.
T Consensus 49 d~~~~fIDvpgh~~~i--~------~miag~~~~d~alLvV~~deGl~~qtgE-----hL~iLdllgi~~giivltk~D~ 115 (447)
T COG3276 49 DGVMGFIDVPGHPDFI--S------NLLAGLGGIDYALLVVAADEGLMAQTGE-----HLLILDLLGIKNGIIVLTKADR 115 (447)
T ss_pred CCceEEeeCCCcHHHH--H------HHHhhhcCCceEEEEEeCccCcchhhHH-----HHHHHHhcCCCceEEEEecccc
Confidence 3456799999975431 1 1123445679999999997665543321 345667888887 889999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.++......++.+.+. .+.++++ .|+.++.|+++|.+.+
T Consensus 116 ~d~~r~e~~i~~Il~~l~--l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 116 VDEARIEQKIKQILADLS--LANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred ccHHHHHHHHHHHHhhcc--cccccccccccccCCCHHHHHHHH
Confidence 987653333334433333 3455666 7888899999887765
No 340
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=2.7e-05 Score=69.13 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=34.9
Q ss_pred eeeeeEEEEEeccch-HHHHhhhccCCChhHHHHHHh--hcCEEEEeCCCCCCcCCCcchHHHHHHHHH
Q 025133 151 VRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIH 216 (257)
Q Consensus 151 ~~~~~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~D~~~~~~~~~~l~~~~~~l~ 216 (257)
-++.+.+|.+-+..- +.+++- +..+.+. ...+-|+-|+|.++.+++......+.+.+.
T Consensus 128 ~RVH~cLYFI~P~ghgL~p~Di--------~~Mk~l~~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~ 188 (366)
T KOG2655|consen 128 NRVHCCLYFISPTGHGLKPLDI--------EFMKKLSKKVNLIPVIAKADTLTKDELNQFKKRIRQDIE 188 (366)
T ss_pred CceEEEEEEeCCCCCCCcHhhH--------HHHHHHhccccccceeeccccCCHHHHHHHHHHHHHHHH
Confidence 488899999987643 444431 2334442 345779999999998774333333333333
No 341
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=1.4e-05 Score=77.25 Aligned_cols=142 Identities=20% Similarity=0.220 Sum_probs=82.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCccc----ccchhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI----GVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~----~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
++--+.|.|...+|||||..+|+-.. +++.. .|+.- ..|..-.. ..-+ +.+...+++|....
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t-----G~i~k-~G~v~~g~~~~D~~e~E-qeRG------ITI~saa~s~~~~~- 74 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT-----GIISK-IGEVHDGAATMDWMEQE-QERG------ITITSAATTLFWKG- 74 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc-----CCcCC-CccccCCCccCCCcHHH-HhcC------CEEeeeeeEEEEcC-
Confidence 45568999999999999999998431 11221 33210 11111000 0011 23334444442221
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI- 185 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql- 185 (257)
++.+-||||||-.+.....+ +...-+|.++.|+||..+...... ...+|.
T Consensus 75 -------------~~~iNlIDTPGHVDFt~EV~--------rslrvlDgavvVvdaveGV~~QTE--------tv~rqa~ 125 (697)
T COG0480 75 -------------DYRINLIDTPGHVDFTIEVE--------RSLRVLDGAVVVVDAVEGVEPQTE--------TVWRQAD 125 (697)
T ss_pred -------------ceEEEEeCCCCccccHHHHH--------HHHHhhcceEEEEECCCCeeecHH--------HHHHHHh
Confidence 36688999999776543322 122347999999999987665332 233443
Q ss_pred --hhcCEEEEeCCCCCCcCCCcchHHHHHHHHH
Q 025133 186 --AFADVVILNKVDLVSPERSGDSLDELEKEIH 216 (257)
Q Consensus 186 --~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~ 216 (257)
+-|-++++||+|.+..+- ....+++...+.
T Consensus 126 ~~~vp~i~fiNKmDR~~a~~-~~~~~~l~~~l~ 157 (697)
T COG0480 126 KYGVPRILFVNKMDRLGADF-YLVVEQLKERLG 157 (697)
T ss_pred hcCCCeEEEEECccccccCh-hhhHHHHHHHhC
Confidence 458899999999998753 233445555444
No 342
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.03 E-value=3e-05 Score=67.15 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=31.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
++++.|+|+.|||||||+.+|+.. ..| +++++.+++
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 468999999999999999999875 446 899999876
No 343
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.01 E-value=1.4e-05 Score=70.15 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=63.1
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE-EEeCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV-ILNKV 196 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi-vlNK~ 196 (257)
..+..+|+.||||-. ++...+ ....-.++..|.+|||..+......- -.-....++..+++ .+||+
T Consensus 83 T~KRkFIiADTPGHe---QYTRNM-----aTGASTadlAIlLVDAR~Gvl~QTrR-----Hs~I~sLLGIrhvvvAVNKm 149 (431)
T COG2895 83 TEKRKFIIADTPGHE---QYTRNM-----ATGASTADLAILLVDARKGVLEQTRR-----HSFIASLLGIRHVVVAVNKM 149 (431)
T ss_pred cccceEEEecCCcHH---HHhhhh-----hcccccccEEEEEEecchhhHHHhHH-----HHHHHHHhCCcEEEEEEeee
Confidence 456789999999943 223222 23345689999999998776543321 11233456666544 68999
Q ss_pred CCCCcCCC--cchHHHHHHHHHHhC--CCCEEEEeecCCcCh
Q 025133 197 DLVSPERS--GDSLDELEKEIHEIN--SLAHVIRSVRCQVDL 234 (257)
Q Consensus 197 D~~~~~~~--~~~l~~~~~~l~~~~--~~a~i~~s~~~~~~~ 234 (257)
|+++-++. .+..+++..+.++++ +...|..|+..|-++
T Consensus 150 DLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 150 DLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 99987652 233445555555543 334455777776655
No 344
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00011 Score=60.19 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=89.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..--++++|-+|+|||+++..+..... ...+..++++|-.. ..+++.+.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f-------~~~~~sTiGIDFk~-----------kti~l~g~------------- 59 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSF-------NTSFISTIGIDFKI-----------KTIELDGK------------- 59 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccC-------cCCccceEEEEEEE-----------EEEEeCCe-------------
Confidence 344688999999999999999986411 11122224444211 11222221
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh---
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--- 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~--- 187 (257)
...+.+.||.|......+.... ...+..+++|+|..+........ .+...+.+...
T Consensus 60 ---------~i~lQiWDtaGQerf~ti~~sY--------yrgA~gi~LvyDitne~Sfeni~----~W~~~I~e~a~~~v 118 (207)
T KOG0078|consen 60 ---------KIKLQIWDTAGQERFRTITTAY--------YRGAMGILLVYDITNEKSFENIR----NWIKNIDEHASDDV 118 (207)
T ss_pred ---------EEEEEEEEcccchhHHHHHHHH--------HhhcCeeEEEEEccchHHHHHHH----HHHHHHHhhCCCCC
Confidence 2335699999987766665432 23467889999988655432211 13344444433
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNC 240 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~ 240 (257)
+-++|-||+|+....+. ..++-++...++ +...+ +|++.+.++.+.+-.
T Consensus 119 ~~~LvGNK~D~~~~R~V--~~e~ge~lA~e~--G~~F~EtSAk~~~NI~eaF~~ 168 (207)
T KOG0078|consen 119 VKILVGNKCDLEEKRQV--SKERGEALAREY--GIKFFETSAKTNFNIEEAFLS 168 (207)
T ss_pred cEEEeeccccccccccc--cHHHHHHHHHHh--CCeEEEccccCCCCHHHHHHH
Confidence 33667799999885443 223333433333 45555 799999999865543
No 345
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.01 E-value=3.6e-05 Score=77.28 Aligned_cols=109 Identities=20% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
-|.+.|+||||......+.. ......|.+++|+|+.......... ....+.....|.++++||+|+.
T Consensus 525 ~p~i~fiDTPGhe~F~~lr~--------~g~~~aDivlLVVDa~~Gi~~qT~e-----~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 525 IPGLLFIDTPGHEAFTSLRK--------RGGSLADLAVLVVDINEGFKPQTIE-----AINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred cCcEEEEECCCcHHHHHHHH--------hhcccCCEEEEEEECcccCCHhHHH-----HHHHHHHcCCCEEEEEECCCCc
Confidence 36789999999432222211 1234478999999998653332211 1223344556889999999997
Q ss_pred CcCCC--------------cchHHHHHHH-------HHHh-------------CCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERS--------------GDSLDELEKE-------IHEI-------------NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~--------------~~~l~~~~~~-------l~~~-------------~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..... .+.+.++... |.+. ....+++ +|+.++.|+++|+..+
T Consensus 592 ~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l 668 (1049)
T PRK14845 592 PGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMV 668 (1049)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHH
Confidence 43110 0112222211 2221 1234555 8999999999998765
No 346
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.00 E-value=6.1e-06 Score=68.83 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=39.0
Q ss_pred CcEEEEccccccc-cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.+.| +++..+.+.+.- .++|.|++|||||||++.|..
T Consensus 1 ~~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999 666677766554 799999999999999999964
No 347
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=1.1e-05 Score=63.98 Aligned_cols=167 Identities=18% Similarity=0.114 Sum_probs=86.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++|.|+-|||||||+.++=... +..+|. .+. ..+-....++.|-+|-.
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~--------~~~~~~---l~~---------~ki~~tvgLnig~i~v~----------- 67 (197)
T KOG0076|consen 19 SVLILGLDNAGKTTFLEALKTDF--------SKAYGG---LNP---------SKITPTVGLNIGTIEVC----------- 67 (197)
T ss_pred hheeeccccCCchhHHHHHHHHH--------HhhhcC---CCH---------HHeecccceeecceeec-----------
Confidence 47899999999999999884210 000110 000 11112233444444321
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivl 193 (257)
+....|.|.-|.-....+.... -..+..+++++||.+-...........++..--.+-+.|.++.+
T Consensus 68 ------~~~l~fwdlgGQe~lrSlw~~y--------Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~la 133 (197)
T KOG0076|consen 68 ------NAPLSFWDLGGQESLRSLWKKY--------YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLA 133 (197)
T ss_pred ------cceeEEEEcCChHHHHHHHHHH--------HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 2235688888864433333211 12467899999998632211110000001111133345778889
Q ss_pred eCCCCCCcCCCcchHHHHHHHHH--HhCC--CCEE-EEeecCCcCh----hhhhcCccCCCCCCC
Q 025133 194 NKVDLVSPERSGDSLDELEKEIH--EINS--LAHV-IRSVRCQVDL----SEVLNCRAYDATVNP 249 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~--~~~~--~a~i-~~s~~~~~~~----~~l~~~~~~~~~~~~ 249 (257)
||-|+-+..+ .+++...+. +..| ..++ .+|+..+.|+ .++..+..-+.++.|
T Consensus 134 nkqd~q~~~~----~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn~~rp~ 194 (197)
T KOG0076|consen 134 NKQDLQNAME----AAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKNVTRPP 194 (197)
T ss_pred chhhhhhhhh----HHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhccCCCc
Confidence 9999988755 455665554 3332 2223 2788887654 455555555544444
No 348
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=8.9e-06 Score=72.13 Aligned_cols=103 Identities=24% Similarity=0.215 Sum_probs=59.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++|+|.||+|||||.|+|.+.. +-+.|-|-.|+.-.... ..+ ++.-...|.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-----a~~aNYPF~TIePN~Gi-------------v~v---------~d~rl~~L~ 55 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-----AEIANYPFCTIEPNVGV-------------VYV---------PDCRLDELA 55 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-----ccccCCCcccccCCeeE-------------Eec---------CchHHHHHH
Confidence 357899999999999999998641 22223322212111000 011 111111222
Q ss_pred HHHH---hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 113 QLVQ---RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 113 ~~~~---~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
++.. +.-...+-|||.+|+.......+.+. ++.+.+..++|.++.|||+.
T Consensus 56 ~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLG-NkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 56 EIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLG-NKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred HhcCCCCcEEeeeeEEEEecccCCCcccCCCcc-hHHHHhhhhcCeEEEEEEec
Confidence 2111 01123466899999887666555444 45567788899999999997
No 349
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.98 E-value=6.1e-06 Score=72.99 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=37.7
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|++|.|++..++.+.+.. +++++||+|||||||++.+..
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 68899999999996466656554 799999999999999999975
No 350
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00012 Score=58.80 Aligned_cols=148 Identities=21% Similarity=0.200 Sum_probs=84.9
Q ss_pred EEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
+++.|-.|+|||.|+.++... ......+.+--|+|.. .+.+.
T Consensus 9 yIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r-------------------~~~id------------------ 51 (216)
T KOG0098|consen 9 YIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGAR-------------------MVTID------------------ 51 (216)
T ss_pred EEEECCCCccHHHHHHHHhccCccccccceeeeeecee-------------------EEEEc------------------
Confidence 577899999999999999864 2111223344444420 11110
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC---E
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD---V 190 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~---v 190 (257)
..+..+-+-||.|.-....+.... ++ ....+++|.|..+-..-.. +..+.+-+.|...+. +
T Consensus 52 ----~k~IKlqiwDtaGqe~frsv~~sy-----Yr---~a~GalLVydit~r~sF~h----L~~wL~D~rq~~~~NmvIm 115 (216)
T KOG0098|consen 52 ----GKQIKLQIWDTAGQESFRSVTRSY-----YR---GAAGALLVYDITRRESFNH----LTSWLEDARQHSNENMVIM 115 (216)
T ss_pred ----CceEEEEEEecCCcHHHHHHHHHH-----hc---cCcceEEEEEccchhhHHH----HHHHHHHHHHhcCCCcEEE
Confidence 223456799999987655555432 22 2357788888876443211 112444556654333 3
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhh
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVL 238 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~ 238 (257)
++-||+|+....+.. -++-+.+-++ +...-.-.|++++.++++.+
T Consensus 116 LiGNKsDL~~rR~Vs--~EEGeaFA~e-hgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 116 LIGNKSDLEARREVS--KEEGEAFARE-HGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEcchhhhhcccccc--HHHHHHHHHH-cCceeehhhhhhhhhHHHHH
Confidence 344999999876542 2445555554 33221126888888887665
No 351
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.97 E-value=2.1e-05 Score=59.26 Aligned_cols=92 Identities=23% Similarity=0.257 Sum_probs=56.0
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCce---eeeeeecCCCceeeccchhHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGAL---VEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~---~~~~~~l~~gcicc~~~~~~~~ 109 (257)
++++|.+|+||||+...|... ..++++.++..|+.+ ..........+... .........||.|-... .+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~~~---~~~~~~~~~~~~~~~i~~g~~~~~~~g~~~~~n~-~~~~ 77 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPDD---LPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENA-LLNA 77 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCchh---hHHHHhhccCCceEEEEecccccCCCCCEehhhH-HHHH
Confidence 689999999999999988653 458889999988843 11112211111121 22333456788886421 2233
Q ss_pred HHHHHHHhcCCCCEEEEecCCCC
Q 025133 110 ALEQLVQRKERLDHILLETTGLA 132 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~ 132 (257)
.+..+. ..+++++++||++-.
T Consensus 78 ~l~~~~--~~~~~~vivDt~ag~ 98 (116)
T cd02034 78 LLRHLV--LTRDEQVVVDTEAGL 98 (116)
T ss_pred HHHHeE--ccCCCEEEEecHHHH
Confidence 333222 356789999998743
No 352
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.97 E-value=1.1e-05 Score=67.61 Aligned_cols=48 Identities=31% Similarity=0.424 Sum_probs=42.3
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+...+++++++++++++..+++.... +.+|.|++|+|||||++.++..
T Consensus 5 ~~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl 57 (263)
T COG1127 5 PEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL 57 (263)
T ss_pred CcceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc
Confidence 46789999999999999988877554 7999999999999999999853
No 353
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.97 E-value=6.6e-06 Score=69.46 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=38.6
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|++|.|+++..+++.+.- ++++.|++||||||+++.+-+
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc
Confidence 47899999999999998877665 689999999999999988864
No 354
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.95 E-value=1.1e-05 Score=68.84 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|.+|+|||||+|+|+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~ 142 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDP 142 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999999995
No 355
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.95 E-value=9.7e-06 Score=72.69 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=35.3
Q ss_pred CCCEEEEecCCCCCc----HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeC
Q 025133 120 RLDHILLETTGLANP----APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~----~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK 195 (257)
.|+++|-|.||++.+ ..+.+.. ...+.|.+|.+.+..--..... +...+.+.+.+..+|-+|
T Consensus 85 ~pnv~lWDlPG~gt~~f~~~~Yl~~~-------~~~~yD~fiii~s~rf~~ndv~-------La~~i~~~gK~fyfVRTK 150 (376)
T PF05049_consen 85 FPNVTLWDLPGIGTPNFPPEEYLKEV-------KFYRYDFFIIISSERFTENDVQ-------LAKEIQRMGKKFYFVRTK 150 (376)
T ss_dssp -TTEEEEEE--GGGSS--HHHHHHHT-------TGGG-SEEEEEESSS--HHHHH-------HHHHHHHTT-EEEEEE--
T ss_pred CCCCeEEeCCCCCCCCCCHHHHHHHc-------cccccCEEEEEeCCCCchhhHH-------HHHHHHHcCCcEEEEEec
Confidence 367999999997654 2233222 2456777776665543322222 345667788899999999
Q ss_pred CCC
Q 025133 196 VDL 198 (257)
Q Consensus 196 ~D~ 198 (257)
+|.
T Consensus 151 vD~ 153 (376)
T PF05049_consen 151 VDS 153 (376)
T ss_dssp HHH
T ss_pred ccc
Confidence 996
No 356
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.94 E-value=9.2e-06 Score=71.42 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=40.8
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 ~~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 1 SNVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred CCcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999887777766554 7999999999999999999863
No 357
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.94 E-value=8.9e-06 Score=65.79 Aligned_cols=45 Identities=31% Similarity=0.492 Sum_probs=37.9
Q ss_pred EEEEccccccccCcc-cCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSH-ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++.|+|.+.+ .+.+.++- ++.++|++|||||||++.|...
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999976 56666543 6999999999999999999864
No 358
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.93 E-value=1.2e-05 Score=69.41 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=40.9
Q ss_pred CCCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++.++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 16 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 16 EAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4455578999999999887777766554 799999999999999999985
No 359
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.92 E-value=6.1e-06 Score=63.66 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=81.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.+.++|.-+|||||+.|.+..-. -.-+.+.+.|+ .+..++.||+.|
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~-------~~edmiptvGf---------------nmrk~tkgnvti------------ 67 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQ-------YLEDMIPTVGF---------------NMRKVTKGNVTI------------ 67 (186)
T ss_pred eEEEEeeccCCcceEEEEEeecc-------chhhhcccccc---------------eeEEeccCceEE------------
Confidence 46788999999999988876310 00111111111 234556666654
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH--HHH-hhcCE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI--HQI-AFADV 190 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~--~ql-~~~~v 190 (257)
.+-|.+|.-.....-+.+. ..++.++|+|||... ..+...+.. +-..+ .|+ +.|.+
T Consensus 68 ----------klwD~gGq~rfrsmWeryc--------R~v~aivY~VDaad~-~k~~~sr~E--L~~LL~k~~l~gip~L 126 (186)
T KOG0075|consen 68 ----------KLWDLGGQPRFRSMWERYC--------RGVSAIVYVVDAADP-DKLEASRSE--LHDLLDKPSLTGIPLL 126 (186)
T ss_pred ----------EEEecCCCccHHHHHHHHh--------hcCcEEEEEeecCCc-ccchhhHHH--HHHHhcchhhcCCcEE
Confidence 5889999776655554332 247899999999862 211110000 01111 222 45777
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHH--HHhCCC--CEEEEeecCCcChhhhhcC
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEI--HEINSL--AHVIRSVRCQVDLSEVLNC 240 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l--~~~~~~--a~i~~s~~~~~~~~~l~~~ 240 (257)
++-||.|+-++-. -.++...+ ..+... ....+|.+...+++.+++.
T Consensus 127 VLGnK~d~~~AL~----~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~W 176 (186)
T KOG0075|consen 127 VLGNKIDLPGALS----KIALIERMGLSSITDREVCCFSISCKEKVNIDITLDW 176 (186)
T ss_pred EecccccCccccc----HHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHH
Confidence 7889999887632 12222222 112111 2234788888888866554
No 360
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.91 E-value=1e-05 Score=71.98 Aligned_cols=46 Identities=28% Similarity=0.449 Sum_probs=40.1
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...+++++++|.|++..++++.+.- ++.+.||+||||||+++.|..
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999988888777554 688999999999999999985
No 361
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=5.3e-05 Score=61.08 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=62.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh-HHHHHHhhcCEE---EEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQIAFADVV---ILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~ql~~~~vi---vlNK~ 196 (257)
..+.+=||.|.-....+.-+. ...+..+|.|.|..+..+-.... .+. +.-.|.. ++++ |-||+
T Consensus 54 ikfeIWDTAGQERy~slapMY--------yRgA~AAivvYDit~~~SF~~aK----~WvkeL~~~~~-~~~vialvGNK~ 120 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYHSLAPMY--------YRGANAAIVVYDITDEESFEKAK----NWVKELQRQAS-PNIVIALVGNKA 120 (200)
T ss_pred EEEEEEEcCCcccccccccce--------ecCCcEEEEEEecccHHHHHHHH----HHHHHHHhhCC-CCeEEEEecchh
Confidence 346688999976543332211 12456788888988655432211 022 2223433 5544 45999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
|+....+. ..++...+-.+ -....+ .|++++.++++|+..+...
T Consensus 121 DL~~~R~V--~~~ea~~yAe~--~gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 121 DLLERREV--EFEEAQAYAES--QGLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred hhhhcccc--cHHHHHHHHHh--cCCEEEEEecccccCHHHHHHHHHHh
Confidence 99985442 24455554443 334455 7999999999988777444
No 362
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.91 E-value=8.9e-05 Score=67.39 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=63.1
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 197 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D 197 (257)
+++..+-+|||||-++..-..+-. ..=+|.+++||||..+..+...+ .....-..+..-++|+||+|
T Consensus 65 ~~~~~INIvDTPGHADFGGEVERv--------l~MVDgvlLlVDA~EGpMPQTrF-----VlkKAl~~gL~PIVVvNKiD 131 (603)
T COG1217 65 YNGTRINIVDTPGHADFGGEVERV--------LSMVDGVLLLVDASEGPMPQTRF-----VLKKALALGLKPIVVINKID 131 (603)
T ss_pred cCCeEEEEecCCCcCCccchhhhh--------hhhcceEEEEEEcccCCCCchhh-----hHHHHHHcCCCcEEEEeCCC
Confidence 456778899999977754333311 11269999999999887664432 22222334667899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhC------CCCEEEEeecCC
Q 025133 198 LVSPERSGDSLDELEKEIHEIN------SLAHVIRSVRCQ 231 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~------~~a~i~~s~~~~ 231 (257)
..++.. .+.++++...+-++. .+.-++.|+..+
T Consensus 132 rp~Arp-~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G 170 (603)
T COG1217 132 RPDARP-DEVVDEVFDLFVELGATDEQLDFPIVYASARNG 170 (603)
T ss_pred CCCCCH-HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCc
Confidence 887543 255666666665543 222344666654
No 363
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.90 E-value=3.6e-05 Score=61.64 Aligned_cols=154 Identities=20% Similarity=0.215 Sum_probs=89.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccC-CCCeEEEEecCCCcc-cccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEE-IGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~-~~~~v~ii~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.--|++.|=+|+|||+|+|.+...+ ...--+.|..++-+. +.+|..
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~-------------------------------- 56 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDR-------------------------------- 56 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCe--------------------------------
Confidence 3457889999999999999998641 112225555555431 112211
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHHHHH--
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQI-- 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~ql-- 185 (257)
..-+.+=||.|......+.-.+ ....|..+.+.|...... .+++.+ .+++.|.
T Consensus 57 ----------~vtlQiWDTAGQERFqsLg~aF--------YRgaDcCvlvydv~~~~Sfe~L~~Wr-----~EFl~qa~~ 113 (210)
T KOG0394|consen 57 ----------SVTLQIWDTAGQERFQSLGVAF--------YRGADCCVLVYDVNNPKSFENLENWR-----KEFLIQASP 113 (210)
T ss_pred ----------EEEEEEEecccHHHhhhcccce--------ecCCceEEEEeecCChhhhccHHHHH-----HHHHHhcCC
Confidence 1124577999975443332111 124677777777654332 233321 2344443
Q ss_pred ----hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 186 ----AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ----~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+|-+|+-||+|+-....+.-.......|.+.- ...+.+ +|++...++++-+..+
T Consensus 114 ~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~-gnipyfEtSAK~~~NV~~AFe~i 173 (210)
T KOG0394|consen 114 QDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK-GNIPYFETSAKEATNVDEAFEEI 173 (210)
T ss_pred CCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc-CCceeEEecccccccHHHHHHHH
Confidence 256788889999977543334456666777654 355666 7888888887655544
No 364
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=9.8e-05 Score=68.53 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=39.7
Q ss_pred eeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEE-EEeCCCCCCcCCCcchHHHHHHHH-----HHhCCCCEEE
Q 025133 153 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV-ILNKVDLVSPERSGDSLDELEKEI-----HEINSLAHVI 225 (257)
Q Consensus 153 ~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vi-vlNK~D~~~~~~~~~~l~~~~~~l-----~~~~~~a~i~ 225 (257)
+|.|++++|+..+...-.. .+...+..-+.|-++ |++..|+..... .+...++.| .++.++++.|
T Consensus 134 aDLVlLlIdgnfGfEMETm-----EFLnil~~HGmPrvlgV~ThlDlfk~~s---tLr~~KKrlkhRfWtEiyqGaKlF 204 (1077)
T COG5192 134 ADLVLLLIDGNFGFEMETM-----EFLNILISHGMPRVLGVVTHLDLFKNPS---TLRSIKKRLKHRFWTEIYQGAKLF 204 (1077)
T ss_pred hheeEEEeccccCceehHH-----HHHHHHhhcCCCceEEEEeecccccChH---HHHHHHHHHhhhHHHHHcCCceEE
Confidence 5899999999765442111 123333444455554 889999987643 345444433 4467888887
No 365
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.89 E-value=0.00027 Score=54.80 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=65.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+.+..|..|+||||+.-.+... ..|.++.++..|++. -
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~-~--------------------------------------- 41 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL-A--------------------------------------- 41 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC-C---------------------------------------
Confidence 3567889999999998888653 458888888888653 0
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~ 189 (257)
...+++++||+|+....... .. ...+|.+++++++....-..-.. ....+.+. ....
T Consensus 42 ------~~~yd~VIiD~p~~~~~~~~-~~---------l~~aD~vviv~~~~~~s~~~~~~-----~l~~l~~~~~~~~~ 100 (139)
T cd02038 42 ------NLDYDYIIIDTGAGISDNVL-DF---------FLAADEVIVVTTPEPTSITDAYA-----LIKKLAKQLRVLNF 100 (139)
T ss_pred ------CCCCCEEEEECCCCCCHHHH-HH---------HHhCCeEEEEcCCChhHHHHHHH-----HHHHHHHhcCCCCE
Confidence 11278999999985543321 11 23468999999998554211000 11122121 1234
Q ss_pred EEEEeCCCCC
Q 025133 190 VVILNKVDLV 199 (257)
Q Consensus 190 vivlNK~D~~ 199 (257)
.+|+|+++.-
T Consensus 101 ~lVvN~~~~~ 110 (139)
T cd02038 101 RVVVNRAESP 110 (139)
T ss_pred EEEEeCCCCH
Confidence 6899998643
No 366
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.89 E-value=1.3e-05 Score=66.49 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=39.0
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 m~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999887667666554 7999999999999999999863
No 367
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.88 E-value=1.3e-05 Score=67.43 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=39.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+.++++.+.|++..++.+.+.- ++.|.|++|+|||||+|.+..
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 367889999999998888877665 699999999999999999975
No 368
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.88 E-value=1.8e-05 Score=66.46 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=39.3
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999877777766554 799999999999999999985
No 369
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.87 E-value=1.8e-05 Score=67.66 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=39.3
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+|-.++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 44568999999999876666666554 799999999999999999984
No 370
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=1.4e-05 Score=67.74 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=38.9
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CEEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999887777666554 7999999999999999999853
No 371
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.86 E-value=0.00059 Score=54.60 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=69.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+.+..+..|+||||+.-.|... ..|+++.++..|++. -+.+..+-.... ....+
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~-~~~~~~~~~~~~-------------------~~~~~---- 57 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGL-RNLDLILGLENR-------------------VVYTL---- 57 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCchhhcccccc-------------------CCcch----
Confidence 3566778999999999999753 569999999998852 111111000000 00001
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh-cCE
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADV 190 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~-~~v 190 (257)
.+++ .-|+|+|||||....... .. ....|.++.++++.......-. .+.+.+.+... ...
T Consensus 58 ~~~~----~~d~viiD~p~~~~~~~~-~~---------l~~ad~viiv~~~~~~s~~~~~-----~~~~~~~~~~~~~~~ 118 (179)
T cd02036 58 HDVL----AGDYILIDSPAGIERGFI-TA---------IAPADEALLVTTPEISSLRDAD-----RVKGLLEALGIKVVG 118 (179)
T ss_pred hhcc----cCCEEEEECCCCCcHHHH-HH---------HHhCCcEEEEeCCCcchHHHHH-----HHHHHHHHcCCceEE
Confidence 1111 118999999985543221 11 2246789999988754321110 01222233222 246
Q ss_pred EEEeCCCCCCc
Q 025133 191 VILNKVDLVSP 201 (257)
Q Consensus 191 ivlNK~D~~~~ 201 (257)
+|+|+++.-..
T Consensus 119 iv~N~~~~~~~ 129 (179)
T cd02036 119 VIVNRVRPDMV 129 (179)
T ss_pred EEEeCCccccc
Confidence 78999886543
No 372
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=1.7e-05 Score=68.52 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=40.9
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++.++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 9 ~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred CCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 456689999999999887777766554 699999999999999999985
No 373
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.85 E-value=1.2e-05 Score=71.74 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=40.1
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++++|++++|+++..+.+.+.- ++++.|++|||||||++.|+..
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3469999999999988777766543 7999999999999999999863
No 374
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00022 Score=55.53 Aligned_cols=144 Identities=19% Similarity=0.248 Sum_probs=76.9
Q ss_pred EEEEecCCCcHHHHHHHHHccC-CCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~-~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
+++.|+.|+|||.|++.+++.. ....--.|--++|+ .+++.|
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgS------rIinVG------------------------------- 54 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGS------RIVNVG------------------------------- 54 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhhhcccccceeeeeecc------eeeeec-------------------------------
Confidence 6789999999999999998741 11111122234443 111111
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivl 193 (257)
.....+.+-||.|......+.... ++ .+-..++|.|+.+-....... .+..-.+.+..+.++|+
T Consensus 55 ----gK~vKLQIWDTAGQErFRSVtRsY-----YR---GAAGAlLVYD~TsrdsfnaLt----nWL~DaR~lAs~nIvvi 118 (214)
T KOG0086|consen 55 ----GKTVKLQIWDTAGQERFRSVTRSY-----YR---GAAGALLVYDITSRDSFNALT----NWLTDARTLASPNIVVI 118 (214)
T ss_pred ----CcEEEEEEeecccHHHHHHHHHHH-----hc---cccceEEEEeccchhhHHHHH----HHHHHHHhhCCCcEEEE
Confidence 011335688999987665555432 22 234678888887644321110 12223344445554443
Q ss_pred ---eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE--EeecCCcChhh
Q 025133 194 ---NKVDLVSPERSGDSLDELEKEIHEINSLAHVI--RSVRCQVDLSE 236 (257)
Q Consensus 194 ---NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~--~s~~~~~~~~~ 236 (257)
||.|+..+.+.. ..+... +.+.|.- ++ .|++++.++++
T Consensus 119 L~GnKkDL~~~R~Vt--flEAs~-FaqEnel--~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 119 LCGNKKDLDPEREVT--FLEASR-FAQENEL--MFLETSALTGENVEE 161 (214)
T ss_pred EeCChhhcChhhhhh--HHHHHh-hhcccce--eeeeecccccccHHH
Confidence 999998875521 111111 1122221 33 68999998864
No 375
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.85 E-value=1.6e-05 Score=68.68 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=40.2
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.+.+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 3 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CccceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344578999999999877666665554 7999999999999999999853
No 376
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.85 E-value=1.5e-05 Score=62.13 Aligned_cols=36 Identities=33% Similarity=0.560 Sum_probs=27.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEec-CC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN-EF 68 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~-~~ 68 (257)
|++.|+|+.|||||||++.|+++ .+|.+++++.+ +.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 78999999999999999999875 46889985554 44
No 377
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.84 E-value=4.8e-05 Score=63.90 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=52.2
Q ss_pred CCCCCcEEEEccccccccCcccCCCcceeE-----EEEEecCCCcHHHHHHHHHccCC--CCeEEEEecCCCc
Q 025133 5 EEDPPLAVRIDETTHEFSNSHENDDVSVGV-----TVITGFLGAGKSTLVNYILNGKH--GKRIAVILNEFGE 70 (257)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----v~i~G~~gsGKSTli~~Ll~~~~--~~~v~ii~~~~g~ 70 (257)
.+..+..++++++..+++++..+.+.+-.| ++|+|++|||||||++.+..+.+ ...+.+.-.-+|.
T Consensus 25 ~~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~ 97 (257)
T COG1119 25 IEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGK 97 (257)
T ss_pred CCCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccC
Confidence 344556799999999999999998886654 99999999999999999987532 3455566666665
No 378
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=1.7e-05 Score=67.30 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=38.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CEEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999887777665543 7999999999999999999853
No 379
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.83 E-value=1.5e-05 Score=63.04 Aligned_cols=85 Identities=18% Similarity=0.108 Sum_probs=52.4
Q ss_pred ccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh--hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE
Q 025133 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (257)
Q Consensus 148 ~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~ 225 (257)
.....+|.+++|+|++......+. .+...+.... .+.++|+||+|++++++ +..+...+++..+...+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~-----~i~~~l~~~~~~~p~ilVlNKiDl~~~~~----~~~~~~~~~~~~~~~~~~ 74 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCK-----HVEEYLKKEKPHKHLIFVLNKCDLVPTWV----TARWVKILSKEYPTIAFH 74 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCH-----HHHHHHHhccCCCCEEEEEEchhcCCHHH----HHHHHHHHhcCCcEEEEE
Confidence 345678999999999875332111 0222232222 57799999999986542 334444454444433344
Q ss_pred EeecCCcChhhhhcCc
Q 025133 226 RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 ~s~~~~~~~~~l~~~~ 241 (257)
.|+..+.++++|++.+
T Consensus 75 iSa~~~~~~~~L~~~l 90 (157)
T cd01858 75 ASINNPFGKGSLIQLL 90 (157)
T ss_pred eeccccccHHHHHHHH
Confidence 7888888888777766
No 380
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.83 E-value=1.5e-05 Score=69.77 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=39.1
Q ss_pred EEEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++.|+ .+.++.+.+.. ++++.|++|||||||++.|+..
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 577899999999 58888877654 7999999999999999999863
No 381
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.83 E-value=2.9e-05 Score=70.08 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=35.0
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
..+++++.|+|++|||||||+.+|+.. ..|.+++++.++-.
T Consensus 202 ~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 202 TGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred CCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 346889999999999999999999875 55889999997644
No 382
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.82 E-value=2.2e-05 Score=63.21 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=32.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
.+.|++.|+|++|||||||+++|+.. ..+.+++++.++
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 36789999999999999999999864 347789999874
No 383
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.81 E-value=0.00022 Score=57.86 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=75.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccch-----hhhhcCCCCceeeeeeecCCCceee----c
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVER-----AMINEGEGGALVEEWVELANGCICC----T 102 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~-----~~~~~~~~~~~~~~~~~l~~gcicc----~ 102 (257)
+.+..+.-|+||||+.-.|... ..|++++++..|+.. ..... .....+...... ....+..+-+.- .
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQA-PNLSILFGVYDILREGLENANA-ILKNFESQDIYQGEEYL 78 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS-HHHHHHTTCHHHHTTSSHGHHC-HHESCCHHHHHHHCHCH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCccc-ccHHHHhcchhhccccceehhh-hhhccchhhhhhhhhhh
Confidence 4677888999999999998653 569999999998764 11110 001100000000 000000000000 0
Q ss_pred cchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
....+...+..+. ...+|+||||||+..... ... .....|.+|.++++.... +.... .+...+
T Consensus 79 ~~~~l~~~l~~l~--~~~yD~iiiD~~~~~~~~-~~~---------~l~~ad~viv~~~~~~~~--i~~~~---~~~~~l 141 (195)
T PF01656_consen 79 DPELLREILESLI--KSDYDYIIIDTPPGLSDP-VRN---------ALAAADYVIVPIEPDPSS--IEGAE---RLIELL 141 (195)
T ss_dssp HHHHHHHHHHHHH--HTTSSEEEEEECSSSSHH-HHH---------HHHTSSEEEEEEESSHHH--HHHHH---HHHHHH
T ss_pred HHHHHHHHHHHhh--hccccceeecccccccHH-HHH---------HHHhCceeeeecCCcHHH--HHHHH---HHHHHH
Confidence 0011233333322 234999999999855443 111 122468899999988644 22110 123334
Q ss_pred HHHhh---cCEEEEeCCCCCCc
Q 025133 183 HQIAF---ADVVILNKVDLVSP 201 (257)
Q Consensus 183 ~ql~~---~~vivlNK~D~~~~ 201 (257)
..+.. ...+|+||++.-+.
T Consensus 142 ~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 142 KRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp HHHTHTEEEEEEEEEEETSCCH
T ss_pred HHhccccceEEEEEeeeCCCcc
Confidence 44442 34779999976643
No 384
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.81 E-value=1.9e-05 Score=66.05 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=33.8
Q ss_pred EEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++.+.|... ..+++...- +++|+||+|||||||+|.+-.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5688999988764 345555443 799999999999999999964
No 385
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.79 E-value=2.3e-05 Score=67.92 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=40.2
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
|++.++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred CCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 455689999999999876666655543 799999999999999999984
No 386
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.79 E-value=4.8e-05 Score=61.09 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..++++|.+|+||||++|+|..
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999994
No 387
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.79 E-value=2e-05 Score=69.44 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=39.4
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++++|++...+.+.+.- ++++.|++|||||||++.|+..
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999987777766554 7999999999999999999863
No 388
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=2.3e-05 Score=67.13 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=38.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|++++++++++|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 1 MTLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred CEEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999887777665543 7999999999999999999853
No 389
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.77 E-value=2.4e-05 Score=64.44 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=39.6
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++.+|++++..++..+.++++. +.+|.||+|||||||++.|..+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc
Confidence 46789999999999988877664 8999999999999999999875
No 390
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=2.3e-05 Score=66.75 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=38.2
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
|+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 1 ~~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 1 MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 568899999999876666666554 799999999999999999985
No 391
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.77 E-value=4.7e-05 Score=69.37 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=32.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
++++.|+|+.|||||||+.+|+.+ ..|.++++|.++-
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 468999999999999999999875 5689999999753
No 392
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=2.6e-05 Score=65.72 Aligned_cols=44 Identities=32% Similarity=0.443 Sum_probs=36.5
Q ss_pred EEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++|+++ ..+.+.++- +++++|++|||||||++.|...
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999876 566665443 7999999999999999999853
No 393
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=3.2e-05 Score=67.06 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=41.5
Q ss_pred CCCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++....+.+++++++|+++..+.+.++- +++|+|++|||||||++.|...
T Consensus 16 ~~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 16 DAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred cccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3345578999999999887777766554 7999999999999999999853
No 394
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=2.2e-05 Score=65.20 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3578899999877677666554 799999999999999999985
No 395
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.76 E-value=6.1e-05 Score=63.21 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=39.8
Q ss_pred cEEEEccccccccCcc----cCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSH----ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++|+.+.|+.+. .++++++- +++++|.+|||||||.+.|+.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 5789999999999988 77777665 699999999999999999984
No 396
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.75 E-value=4e-05 Score=66.29 Aligned_cols=40 Identities=30% Similarity=0.275 Sum_probs=31.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE 70 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~ 70 (257)
.-+.+.|+|.||+|||||||++... -..++.+.+-.++|.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGV 182 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGV 182 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCc
Confidence 4567899999999999999999763 223477888888885
No 397
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.75 E-value=2e-05 Score=69.29 Aligned_cols=46 Identities=28% Similarity=0.389 Sum_probs=38.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.+++++++++|+++..+.+.+.- ++++.|++|||||||++.|+..
T Consensus 1 ~~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 1 MSIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CEEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999887777665443 7999999999999999999863
No 398
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.75 E-value=0.0003 Score=58.78 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=31.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+++++|.+|+||||+...+... ..|+++.++..|+..
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH 39 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 4789999999999999999653 568999999998765
No 399
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.75 E-value=2.2e-05 Score=65.97 Aligned_cols=45 Identities=31% Similarity=0.484 Sum_probs=40.4
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++|+|+.+.++++.++- +.++.|++||||||+++.++.
T Consensus 1 ~~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILg 50 (300)
T COG4152 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG 50 (300)
T ss_pred CceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhc
Confidence 468899999999999998877654 799999999999999999985
No 400
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.74 E-value=3.4e-05 Score=66.27 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=39.0
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++..++++++++.|++...+.+.+.- +++|+|++|||||||++.|..
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34568899999999876666665554 799999999999999999984
No 401
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=2.4e-05 Score=65.37 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=36.3
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999877776666543 7999999999999999999853
No 402
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=2.5e-05 Score=66.94 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=37.2
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999876666665543 7999999999999999999864
No 403
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.73 E-value=3.2e-05 Score=64.26 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=35.5
Q ss_pred EEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+ ++..+.+.+.- +++++|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999994 45566655443 7999999999999999999853
No 404
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.73 E-value=2.2e-05 Score=63.95 Aligned_cols=44 Identities=34% Similarity=0.493 Sum_probs=37.6
Q ss_pred EEEEccccccccCcccCCCcce--e---EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSV--G---VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~--~---vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.+++++|+|+++.++.+.+. | ++.+.||.|||||||+....+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sR 49 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSR 49 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHH
Confidence 4678999999999998876644 3 899999999999999988754
No 405
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00033 Score=56.77 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=81.6
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~ 114 (257)
+++.|=+|+|||.|+.++..- .-.....+++|+|-... ..++.
T Consensus 12 iiliGds~VGKtCL~~Rf~~~-------~f~e~~~sTIGVDf~~r-----------t~e~~------------------- 54 (205)
T KOG0084|consen 12 IILIGDSGVGKTCLLLRFKDD-------TFTESYISTIGVDFKIR-----------TVELD------------------- 54 (205)
T ss_pred EEEECCCCcChhhhhhhhccC-------CcchhhcceeeeEEEEE-----------Eeeec-------------------
Confidence 678899999999999999752 11122233344442211 11111
Q ss_pred HHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEE
Q 025133 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVV 191 (257)
Q Consensus 115 ~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vi 191 (257)
.....+.+=||+|.-....+.. ..+ ..++.||+|.|.+...+- .+.. .+.....+.. .+-++
T Consensus 55 ---gk~iKlQIWDTAGQERFrtit~-----syY---R~ahGii~vyDiT~~~SF-~~v~---~Wi~Ei~~~~~~~v~~lL 119 (205)
T KOG0084|consen 55 ---GKTIKLQIWDTAGQERFRTITS-----SYY---RGAHGIIFVYDITKQESF-NNVK---RWIQEIDRYASENVPKLL 119 (205)
T ss_pred ---ceEEEEEeeeccccHHHhhhhH-----hhc---cCCCeEEEEEEcccHHHh-hhHH---HHHHHhhhhccCCCCeEE
Confidence 1123355889999843332221 122 346889999999853321 1110 0111112211 25678
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|-||+|+.+..... .++.+....+ ++-..++ +|++...++++.+.+.
T Consensus 120 VGNK~Dl~~~~~v~--~~~a~~fa~~-~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 120 VGNKCDLTEKRVVS--TEEAQEFADE-LGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred EeeccccHhheecC--HHHHHHHHHh-cCCcceeecccCCccCHHHHHHHH
Confidence 88999998765431 2222333332 3332244 7888888988776554
No 406
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=3.2e-05 Score=66.86 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=37.8
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 37889999999877777766554 7999999999999999999853
No 407
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.73 E-value=3.7e-05 Score=66.32 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=39.5
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34478999999999877777766554 799999999999999999985
No 408
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.73 E-value=3.4e-05 Score=65.42 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=36.4
Q ss_pred EEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+ ++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999997 65666666554 7999999999999999999853
No 409
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.72 E-value=3.6e-05 Score=64.56 Aligned_cols=45 Identities=31% Similarity=0.390 Sum_probs=36.2
Q ss_pred EEEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++ ..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999765 456655443 7999999999999999999853
No 410
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=2.4e-05 Score=66.08 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=36.3
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999876677666544 7999999999999999999863
No 411
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.72 E-value=3.1e-05 Score=65.94 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=37.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|++...+.+.++- +++|+|++|||||||++.|...
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999876666665443 7999999999999999999853
No 412
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.71 E-value=2.7e-05 Score=64.94 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=35.0
Q ss_pred EEEccccccccC----cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|++ +..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357889999876 4556655443 7999999999999999999853
No 413
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=5e-05 Score=64.93 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=37.9
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|++...+.+.+.- +++|+|++|||||||++.|..
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNR 55 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 78999999999876666665543 799999999999999999985
No 414
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=3.8e-05 Score=65.53 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=38.9
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4468999999999876677766544 799999999999999999985
No 415
>PRK00098 GTPase RsgA; Reviewed
Probab=97.71 E-value=5.4e-05 Score=66.43 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|++|+|||||+|.|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999853
No 416
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.71 E-value=3.1e-05 Score=63.79 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=37.4
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999887777766554 7999999999999999999853
No 417
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.70 E-value=4.7e-05 Score=65.86 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=39.7
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
|.+.+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 20 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred CCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 345579999999999876666655443 899999999999999999985
No 418
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.70 E-value=4.2e-05 Score=65.69 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=38.6
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-.++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 348899999999887676666543 7999999999999999999864
No 419
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.70 E-value=2.6e-05 Score=70.08 Aligned_cols=46 Identities=24% Similarity=0.447 Sum_probs=38.9
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.+++++++++|++...+.+.+.- +++|.|++|||||||++.|...
T Consensus 1 ~~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred CEEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999887666665443 7999999999999999999863
No 420
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=3.8e-05 Score=65.16 Aligned_cols=46 Identities=30% Similarity=0.304 Sum_probs=38.1
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.++++++++.|+++..+.+.+.- +++|+|++|||||||++.|+..
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999876666666554 7999999999999999999853
No 421
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=97.70 E-value=0.0011 Score=58.02 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=31.0
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++|+|.-|+||||+.-.|... ..|+++.++-.||+.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 789999999999999888653 569999999999874
No 422
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.70 E-value=4.6e-05 Score=65.02 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=37.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 68899999999876666655443 799999999999999999974
No 423
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.70 E-value=3.6e-05 Score=65.97 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=37.6
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++++++|+++..+.+...- +++|+|++|||||||++.|..
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 68899999999877766665443 799999999999999999985
No 424
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=9.3e-05 Score=69.75 Aligned_cols=85 Identities=27% Similarity=0.217 Sum_probs=51.3
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCc
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~ 201 (257)
=+-++||||-........ .....+|.++.++|+..+.....+. +....-|-+.|.++|+||+|.+--
T Consensus 198 l~nilDTPGHVnF~DE~t--------a~l~~sDgvVlvvDv~EGVmlntEr-----~ikhaiq~~~~i~vviNKiDRLil 264 (971)
T KOG0468|consen 198 LMNILDTPGHVNFSDETT--------ASLRLSDGVVLVVDVAEGVMLNTER-----IIKHAIQNRLPIVVVINKVDRLIL 264 (971)
T ss_pred eeeeecCCCcccchHHHH--------HHhhhcceEEEEEEcccCceeeHHH-----HHHHHHhccCcEEEEEehhHHHHH
Confidence 355899999666543321 1233579999999998776532221 233345567799999999997521
Q ss_pred CCC---cchHHHHHHHHHHhC
Q 025133 202 ERS---GDSLDELEKEIHEIN 219 (257)
Q Consensus 202 ~~~---~~~l~~~~~~l~~~~ 219 (257)
+-. ...+-.++-.+..+|
T Consensus 265 ELkLPP~DAY~KLrHii~~iN 285 (971)
T KOG0468|consen 265 ELKLPPMDAYYKLRHIIDEIN 285 (971)
T ss_pred HhcCChHHHHHHHHHHHHHhc
Confidence 100 012445555566666
No 425
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.69 E-value=7.7e-05 Score=71.36 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=34.8
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
...++|++.|+|++|||||||+.+|+.+ ..|.++++|.++
T Consensus 6 ~~~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~ 47 (597)
T PRK14491 6 NPLSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHA 47 (597)
T ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcC
Confidence 3456899999999999999999999875 558899999984
No 426
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.69 E-value=3.4e-05 Score=65.22 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=37.2
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999877666665543 7999999999999999999853
No 427
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.69 E-value=3.1e-05 Score=65.03 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=35.6
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|..
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999877666665543 799999999999999999985
No 428
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=3e-05 Score=64.85 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=34.9
Q ss_pred EEEccccccccC----cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|++ +..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999976 4555555443 7999999999999999999853
No 429
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=4.3e-05 Score=66.53 Aligned_cols=45 Identities=31% Similarity=0.453 Sum_probs=37.8
Q ss_pred EEEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++.++|+ ++..+.+.++- +++|.|++|||||||++.|...
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 689999999996 45566666554 7999999999999999999863
No 430
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=4.5e-05 Score=65.11 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=38.1
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 68899999999876677666554 7999999999999999999853
No 431
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.68 E-value=0.00086 Score=49.50 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=51.8
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~-~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
.++.+..|+||||+...|... .. |+++.++..|+..
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~----------------------------------------- 41 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF----------------------------------------- 41 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC-----------------------------------------
Confidence 355778999999999998653 34 8888888877763
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 166 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~ 166 (257)
..|+|+||||+........ . ...+|.++.++++....
T Consensus 42 --------~~D~IIiDtpp~~~~~~~~-~---------l~~aD~vlvvv~~~~~s 78 (106)
T cd03111 42 --------GDDYVVVDLGRSLDEVSLA-A---------LDQADRVFLVTQQDLPS 78 (106)
T ss_pred --------CCCEEEEeCCCCcCHHHHH-H---------HHHcCeEEEEecCChHH
Confidence 1279999999976543221 1 12458899999887554
No 432
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.68 E-value=3.1e-05 Score=64.70 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=35.4
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899998876666655443 7999999999999999999853
No 433
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.68 E-value=4.7e-05 Score=64.88 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=38.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++.+.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 58899999999876666666554 7999999999999999999853
No 434
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=4.2e-05 Score=65.58 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=38.5
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++++++.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3468999999999876666665443 799999999999999999985
No 435
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.67 E-value=3.8e-05 Score=63.47 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=37.2
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999877666666543 7999999999999999999863
No 436
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=4.2e-05 Score=65.37 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999876666555443 7999999999999999999853
No 437
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=4.7e-05 Score=65.56 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=40.4
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++-.+++++++++|+++..+.+...- +++|+|++|||||||++.|..
T Consensus 12 ~~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred CCCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 346678999999999887766665544 799999999999999999985
No 438
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.67 E-value=3.9e-05 Score=67.05 Aligned_cols=103 Identities=21% Similarity=0.152 Sum_probs=58.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCC---CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKH---GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~---~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+-+-++|+|.||+|||||+|+|.+..- +...+.|...-+. +. | .++-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~-V~------------------------v-----~d~R 68 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEAR-VE------------------------V-----PDSR 68 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccce-ee------------------------c-----CchH
Confidence 345789999999999999999986411 2222222222221 10 0 1111
Q ss_pred HHHHHHHHHh--cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc
Q 025133 108 VQALEQLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 108 ~~~l~~~~~~--~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
.+.|-..... .-...+-+.|..|+.......+.+. +..+.+...+|.++.||++..
T Consensus 69 fd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLG-N~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 69 FDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLG-NKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHHHhcCCcceeeeeEEEEeecccccCcccCcCch-HHHHHhhhhccceeEEEEecC
Confidence 1222222211 1234567899999876655444333 344566778899999988763
No 439
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=5.3e-05 Score=65.24 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++.+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 8 ~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45579999999999876666666554 7999999999999999999853
No 440
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.67 E-value=3.8e-05 Score=63.80 Aligned_cols=44 Identities=30% Similarity=0.460 Sum_probs=36.0
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999877766665543 7999999999999999999853
No 441
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=4.7e-05 Score=65.06 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=37.9
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 68899999999877777666543 799999999999999999984
No 442
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.67 E-value=4.4e-05 Score=63.65 Aligned_cols=44 Identities=32% Similarity=0.382 Sum_probs=35.8
Q ss_pred EEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++.++|+++ ..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999875 556655443 7999999999999999999853
No 443
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.67 E-value=3.6e-05 Score=66.65 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=37.6
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++|+++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999887777766543 7999999999999999999863
No 444
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.67 E-value=0.0011 Score=57.04 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=31.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+++|+|.-|+||||+.-.|... ..|+++.++-.|++.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~ 40 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH 40 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 5778899999999998888653 569999999999863
No 445
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.66 E-value=5.1e-05 Score=63.30 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=34.8
Q ss_pred EEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHH
Q 025133 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
+.++|+. .|++...+++....+++|.||.||||||+++.+.
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred EEEECcc-cCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 5567776 7777777777777999999999999999999986
No 446
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.66 E-value=3.8e-05 Score=64.66 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999876666665443 7999999999999999999853
No 447
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.66 E-value=3.6e-05 Score=63.73 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=35.7
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3578899999776666666554 799999999999999999985
No 448
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.66 E-value=4.4e-05 Score=65.43 Aligned_cols=45 Identities=29% Similarity=0.340 Sum_probs=37.8
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++.+.|+++..+.+.+.- +++|.|++|||||||++.|...
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999876666655443 7999999999999999999863
No 449
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=3.3e-05 Score=64.08 Aligned_cols=44 Identities=30% Similarity=0.444 Sum_probs=35.1
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.++- +++++|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578889988776666555443 7999999999999999999853
No 450
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.66 E-value=3.4e-05 Score=63.74 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=33.6
Q ss_pred EEccccccccC-cccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 13 RIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++.|++ +..+.+.+.- +++|+|++|||||||++.|..
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788888876 5666655443 799999999999999999985
No 451
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=4.7e-05 Score=64.52 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=37.6
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999876666655443 7999999999999999999863
No 452
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=5e-05 Score=64.75 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=37.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++++++|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999876666655443 7999999999999999999853
No 453
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.65 E-value=4.2e-05 Score=63.50 Aligned_cols=44 Identities=32% Similarity=0.404 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999876666665544 7999999999999999999853
No 454
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.65 E-value=5e-05 Score=64.86 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=37.7
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++|++...+.+.+.- +++|+|++|||||||++.|...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999876666655443 7999999999999999999864
No 455
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.65 E-value=0.001 Score=55.29 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=30.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++.|+|.-|+||||+.-.|... ..|+++.++-.|++.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~ 40 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4788899999999988888653 568999999998773
No 456
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.65 E-value=4.5e-05 Score=64.64 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=37.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++++|++|+|||||++.|...
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999876666666554 7999999999999999999853
No 457
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=4e-05 Score=64.84 Aligned_cols=44 Identities=27% Similarity=0.447 Sum_probs=35.6
Q ss_pred EEEccccccccC-cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|++ +..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999976 5666665543 7999999999999999999853
No 458
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.64 E-value=4.1e-05 Score=63.77 Aligned_cols=44 Identities=25% Similarity=0.506 Sum_probs=34.9
Q ss_pred EEEccccccccCc--ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|++. ..+.+.+.- +++++|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999652 355554432 7999999999999999999853
No 459
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.64 E-value=4.4e-05 Score=63.70 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=35.2
Q ss_pred EEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|++ +..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889998876 5566665443 7999999999999999999853
No 460
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=5.4e-05 Score=64.93 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=38.6
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3468899999999876666666544 799999999999999999985
No 461
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=4.7e-05 Score=64.92 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=37.3
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 468899999999876666655443 799999999999999999973
No 462
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=3.8e-05 Score=62.11 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=34.3
Q ss_pred EEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 578888888776666555443 799999999999999999985
No 463
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.64 E-value=4.6e-05 Score=64.56 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=36.8
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|+..
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999876666665544 7999999999999999999853
No 464
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.64 E-value=3.8e-05 Score=65.05 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=35.2
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999876666655443 799999999999999999985
No 465
>PRK04296 thymidine kinase; Provisional
Probab=97.63 E-value=0.00078 Score=55.15 Aligned_cols=113 Identities=17% Similarity=0.271 Sum_probs=59.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
-+++++|++|+||||++..++.+ ..++++.++...+.+..+ ...+.+. .+... .+.......++...
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~--lg~~~--------~~~~~~~~~~~~~~ 71 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSR--IGLSR--------EAIPVSSDTDIFEL 71 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecC--CCCcc--------cceEeCChHHHHHH
Confidence 37899999999999999888764 457788877542221111 1111111 01101 11112223344444
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~ 163 (257)
+.+ ...++++|+||-.++....++.+.+. .+ ......++++-.|..
T Consensus 72 ~~~---~~~~~dvviIDEaq~l~~~~v~~l~~---~l-~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 72 IEE---EGEKIDCVLIDEAQFLDKEQVVQLAE---VL-DDLGIPVICYGLDTD 117 (190)
T ss_pred HHh---hCCCCCEEEEEccccCCHHHHHHHHH---HH-HHcCCeEEEEecCcc
Confidence 443 24578999999998765544443221 11 123345566655543
No 466
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=5.9e-05 Score=64.33 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=37.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 58899999999877666655443 799999999999999999985
No 467
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.63 E-value=7.1e-05 Score=65.34 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=0.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
+++++|++|+|||||+|.|+... ....+-++...+.....+......
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~-~~~~g~v~~~~~~g~~tT~~~~~~-------------------------------- 209 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDL-DLATGEISEKLGRGRHTTTHRELF-------------------------------- 209 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchh-hccccceeccCCCCCcccceEEEE--------------------------------
Q ss_pred HHHhcCCCCEEEEecCCCCCc
Q 025133 114 LVQRKERLDHILLETTGLANP 134 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~ 134 (257)
.-.....++||||+.+.
T Consensus 210 ----~~~~~~~liDtPG~~~~ 226 (287)
T cd01854 210 ----PLPGGGLLIDTPGFREF 226 (287)
T ss_pred ----EcCCCCEEEECCCCCcc
No 468
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=6.7e-05 Score=65.42 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=39.9
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+.+++++++++.|+++..+.+.++- +++|+|++|||||||++.|...
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45578999999999887667666543 7999999999999999999853
No 469
>PHA02518 ParA-like protein; Provisional
Probab=97.63 E-value=0.0016 Score=53.70 Aligned_cols=107 Identities=12% Similarity=0.180 Sum_probs=60.8
Q ss_pred EEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 34 VTVITG-FLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 34 vv~i~G-~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
++.|.+ .-|+||||+.-.|... ..|+++.++..|+..... . -......+. . .+. +......+...
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~-~--~~~~~~~~~---~--~i~----~~~~~~~~~~~ 69 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSST-D--WAEAREEGE---P--LIP----VVRMGKSIRAD 69 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChH-H--HHHhcccCC---C--CCc----hhhccHHHHHH
Confidence 455554 4669999999988653 568999999999874211 1 000000000 0 000 00112334444
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 165 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~ 165 (257)
+..+ ...+|+|||||||...+.. .. .....|.++.+++++..
T Consensus 70 l~~~---~~~~d~viiD~p~~~~~~~-~~---------~l~~aD~viip~~ps~~ 111 (211)
T PHA02518 70 LPKV---ASGYDYVVVDGAPQDSELA-RA---------ALRIADMVLIPVQPSPF 111 (211)
T ss_pred HHHH---hccCCEEEEeCCCCccHHH-HH---------HHHHCCEEEEEeCCChh
Confidence 4443 3578999999999654321 11 12346889999998854
No 470
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=5.5e-05 Score=65.95 Aligned_cols=46 Identities=28% Similarity=0.430 Sum_probs=37.3
Q ss_pred cEEEEccccccccCc-----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.++++++.++|.+. ..+.+.+.- +++|.|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468899999999642 366665543 7999999999999999999863
No 471
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=5.7e-05 Score=64.49 Aligned_cols=44 Identities=36% Similarity=0.538 Sum_probs=37.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 47889999999876667666554 799999999999999999985
No 472
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.62 E-value=4.4e-05 Score=64.20 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999876666665543 7999999999999999999853
No 473
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00011 Score=58.17 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=42.9
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHH--ccCCCCeEEEEecCC
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYIL--NGKHGKRIAVILNEF 68 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll--~~~~~~~v~ii~~~~ 68 (257)
|.+.++++.+.|+.+-.+.+.... .+++.||+|+|||||++.|- +-.......|..+++
T Consensus 1 msirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~f 66 (242)
T COG4161 1 MSIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred CceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccc
Confidence 578999999999998777655432 68999999999999999873 222233444444443
No 474
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.62 E-value=4.2e-05 Score=63.44 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=33.5
Q ss_pred EccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 14 IDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 14 ~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++.|++ +..+.+.+.- +++++|++|||||||++.|...
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5678888876 5566655443 7999999999999999999853
No 475
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=6.4e-05 Score=64.13 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=39.0
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++.|+++..+.+.+.- +++|+|++|+|||||++.|...
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 468899999999877777766544 7999999999999999999853
No 476
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.62 E-value=4.4e-05 Score=64.40 Aligned_cols=43 Identities=35% Similarity=0.390 Sum_probs=35.2
Q ss_pred EEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++.+.|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 578899998876666665544 7999999999999999999853
No 477
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.62 E-value=4.5e-05 Score=60.85 Aligned_cols=43 Identities=33% Similarity=0.407 Sum_probs=35.3
Q ss_pred EEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++.|++...+.+...- ++++.|++|+|||||++.|...
T Consensus 2 ~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 578899999876666655443 7999999999999999999853
No 478
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.62 E-value=7e-05 Score=62.89 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=36.7
Q ss_pred EEEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|++. ..+.+.++- +++|+|++|||||||++.|...
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999763 355555443 8999999999999999999853
No 479
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.61 E-value=5.8e-05 Score=64.78 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=38.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999887777666544 7999999999999999999863
No 480
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=7.8e-05 Score=64.36 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=36.9
Q ss_pred cEEEEccccccccCc--ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++++++++.|++. ..+.+.+.- +++|+|++|||||||++.|...
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999763 255554433 7999999999999999999863
No 481
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=5.5e-05 Score=65.98 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=37.4
Q ss_pred cEEEEccccccccC-----cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.+.++++++.|++ +..+.+.+.- +++|.|++|||||||++.|...
T Consensus 1 ~~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 1 MSIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred CEEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999974 2456666554 7999999999999999999863
No 482
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=6.9e-05 Score=63.85 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=38.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.+.. +++|+|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNR 51 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999877777766554 799999999999999999985
No 483
>PRK10908 cell division protein FtsE; Provisional
Probab=97.61 E-value=5.4e-05 Score=63.36 Aligned_cols=44 Identities=27% Similarity=0.478 Sum_probs=35.4
Q ss_pred EEEccccccc-cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.| +++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999998 555556555443 7999999999999999999853
No 484
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.61 E-value=4.5e-05 Score=62.72 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578888888877766665543 7999999999999999999863
No 485
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=5.8e-05 Score=64.79 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=39.7
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-++.++++.++|+++..+.+.++- +++|+|++|||||||++.|...
T Consensus 9 ~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 9 DVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred hheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999988877776554 7999999999999999999853
No 486
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=6e-05 Score=63.72 Aligned_cols=44 Identities=23% Similarity=0.426 Sum_probs=37.8
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 58899999999876666666554 799999999999999999985
No 487
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=6e-05 Score=64.25 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=36.9
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 57899999999876666655443 799999999999999999984
No 488
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.60 E-value=4.1e-05 Score=68.75 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=38.0
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++++|++...+.+.+.- ++++.|++|||||||++.|...
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 368899999999886666554433 7999999999999999999863
No 489
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=6.5e-05 Score=65.20 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=36.6
Q ss_pred cEEEEccccccccCc-----ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
|.++++++++.|++. ..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 458899999999752 355555443 7999999999999999999863
No 490
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=8e-05 Score=65.54 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=40.0
Q ss_pred CCCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+.++.++++.+.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~G 93 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR 93 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 344578999999999887777665554 799999999999999999985
No 491
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=6.9e-05 Score=63.93 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=37.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++++++.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999876666665443 799999999999999999985
No 492
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.60 E-value=6.4e-05 Score=64.31 Aligned_cols=45 Identities=33% Similarity=0.444 Sum_probs=38.1
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 68899999999877666665544 6999999999999999999863
No 493
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=4.8e-05 Score=68.29 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=38.1
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|++...+.+.+.. ++++.|++|||||||++.|...
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 68899999999887666655443 7999999999999999999863
No 494
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.60 E-value=4.4e-05 Score=63.46 Aligned_cols=41 Identities=37% Similarity=0.480 Sum_probs=33.4
Q ss_pred EccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 14 IDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++.|+++..+.+.+.- +++++|++|||||||++.|..
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 57888888776666655443 799999999999999999985
No 495
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.60 E-value=5.5e-05 Score=64.32 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=37.4
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 36889999999877666665544 7999999999999999999853
No 496
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.59 E-value=6.2e-05 Score=64.84 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=41.0
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.-++.++++.+.|+++..+.+.+.- +++|.|++|||||||++.|...
T Consensus 4 ~~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 4 SVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred cccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56688999999999887777766554 7999999999999999999864
No 497
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.59 E-value=8.1e-05 Score=63.69 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=36.9
Q ss_pred CcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
|..++++++++.| ++..+.+.+.- +++|+|++|||||||++.|..
T Consensus 2 ~~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 2 PQQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred CcEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3478999999999 44566655543 799999999999999999985
No 498
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=97.59 E-value=0.0015 Score=53.84 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=30.0
Q ss_pred eeEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 32 VGVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 32 ~~vv~i~-G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
.+++.|+ +..|+||||+...|... ..|+++.++..|+..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 5566666 55799999999998763 568899999888643
No 499
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.58 E-value=4.8e-05 Score=59.45 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=33.6
Q ss_pred EEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++.|++...+.+.++- +++|+|++|+|||||++.|..
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 577888888775555554443 799999999999999999985
No 500
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.58 E-value=6.4e-05 Score=62.01 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=35.9
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.|+++..+.+.+.- +++|+|++|+|||||++.|...
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999877666665443 7999999999999999999853
Done!