Query 025133
Match_columns 257
No_of_seqs 160 out of 1931
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 04:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nij_A Hypothetical protein YJ 99.9 2.2E-25 7.4E-30 195.7 21.7 199 30-246 2-204 (318)
2 3p32_A Probable GTPase RV1496/ 99.8 5.3E-18 1.8E-22 150.8 12.3 187 30-242 77-279 (355)
3 2wsm_A Hydrogenase expression/ 99.7 7.4E-18 2.5E-22 139.2 11.8 179 30-242 28-209 (221)
4 2www_A Methylmalonic aciduria 99.7 1.2E-17 4E-22 148.3 12.1 188 30-241 72-273 (349)
5 3iev_A GTP-binding protein ERA 99.7 4.1E-18 1.4E-22 148.7 5.4 167 30-245 8-180 (308)
6 1wf3_A GTP-binding protein; GT 99.7 7.8E-18 2.7E-22 146.5 7.0 163 30-244 5-170 (301)
7 2p67_A LAO/AO transport system 99.7 6E-17 2.1E-21 143.2 11.2 188 30-241 54-255 (341)
8 4dhe_A Probable GTP-binding pr 99.7 1.7E-17 5.7E-22 137.1 6.1 174 25-243 22-207 (223)
9 1ega_A Protein (GTP-binding pr 99.7 1.8E-16 6.2E-21 137.8 11.0 167 29-245 5-173 (301)
10 3pqc_A Probable GTP-binding pr 99.7 2.2E-16 7.4E-21 127.1 8.3 166 25-241 16-188 (195)
11 1yrb_A ATP(GTP)binding protein 99.6 2.2E-16 7.4E-21 133.8 6.4 209 30-242 12-252 (262)
12 1svi_A GTP-binding protein YSX 99.6 1.6E-15 5.5E-20 122.3 10.3 168 24-241 15-189 (195)
13 2hf9_A Probable hydrogenase ni 99.6 9E-16 3.1E-20 127.1 8.3 180 30-241 36-218 (226)
14 3iby_A Ferrous iron transport 99.6 1.1E-15 3.8E-20 129.9 5.6 157 32-244 1-164 (256)
15 2qm8_A GTPase/ATPase; G protei 99.6 1.7E-14 5.6E-19 127.3 12.2 206 12-242 30-256 (337)
16 3i8s_A Ferrous iron transport 99.5 4.5E-15 1.5E-19 127.3 6.4 159 32-245 3-167 (274)
17 3gee_A MNME, tRNA modification 99.5 9.8E-15 3.4E-19 134.3 5.6 158 34-242 235-393 (476)
18 2qpt_A EH domain-containing pr 99.5 3.7E-14 1.3E-18 132.7 9.4 154 30-203 63-235 (550)
19 3k53_A Ferrous iron transport 99.5 3.4E-14 1.2E-18 121.4 6.5 155 32-242 3-161 (271)
20 4dcu_A GTP-binding protein ENG 99.5 6.5E-15 2.2E-19 135.0 2.0 166 24-243 15-181 (456)
21 1mky_A Probable GTP-binding pr 99.5 2.5E-14 8.6E-19 130.5 4.9 158 32-242 1-161 (439)
22 3a1s_A Iron(II) transport prot 99.5 2.8E-14 9.5E-19 121.3 4.7 154 32-241 5-161 (258)
23 4dcu_A GTP-binding protein ENG 99.5 2.2E-14 7.5E-19 131.5 4.3 164 31-242 194-364 (456)
24 3geh_A MNME, tRNA modification 99.4 1.5E-14 5.1E-19 132.6 2.4 152 34-242 226-379 (462)
25 2hjg_A GTP-binding protein ENG 99.4 6.4E-15 2.2E-19 134.3 -0.4 160 32-245 3-163 (436)
26 1mky_A Probable GTP-binding pr 99.4 6E-14 2.1E-18 127.9 5.0 164 31-242 179-350 (439)
27 1xzp_A Probable tRNA modificat 99.4 2E-14 6.8E-19 132.4 1.5 154 33-242 244-400 (482)
28 3b1v_A Ferrous iron uptake tra 99.4 9.1E-14 3.1E-18 119.1 5.2 154 32-242 3-159 (272)
29 2dyk_A GTP-binding protein; GT 99.4 5.1E-14 1.8E-18 109.6 2.6 152 32-241 1-156 (161)
30 2hjg_A GTP-binding protein ENG 99.4 4.4E-14 1.5E-18 128.7 2.3 163 31-241 174-343 (436)
31 4bas_A ADP-ribosylation factor 99.4 8.9E-13 3E-17 106.3 9.6 157 28-242 13-184 (199)
32 1pui_A ENGB, probable GTP-bind 99.4 3.7E-13 1.3E-17 109.8 7.4 180 11-242 3-194 (210)
33 2qtf_A Protein HFLX, GTP-bindi 99.4 6.8E-13 2.3E-17 118.1 9.3 167 29-242 176-349 (364)
34 1lnz_A SPO0B-associated GTP-bi 99.4 3.7E-14 1.3E-18 125.2 0.6 160 32-245 158-328 (342)
35 2gj8_A MNME, tRNA modification 99.4 5.5E-14 1.9E-18 111.8 1.1 154 33-243 5-162 (172)
36 3dm5_A SRP54, signal recogniti 99.4 8.3E-12 2.8E-16 113.2 14.8 148 31-201 99-254 (443)
37 2nzj_A GTP-binding protein REM 99.4 4.2E-12 1.4E-16 100.0 11.1 153 32-241 4-163 (175)
38 2qu8_A Putative nucleolar GTP- 99.4 2.6E-12 8.8E-17 106.6 9.9 162 30-242 27-200 (228)
39 2fg5_A RAB-22B, RAS-related pr 99.4 7.2E-13 2.5E-17 106.8 6.0 112 121-248 72-187 (192)
40 3lxw_A GTPase IMAP family memb 99.3 7.4E-13 2.5E-17 111.7 5.8 161 32-242 21-203 (247)
41 2wji_A Ferrous iron transport 99.3 4.1E-13 1.4E-17 105.7 3.8 154 32-241 3-159 (165)
42 2aka_B Dynamin-1; fusion prote 99.3 4E-13 1.4E-17 115.8 3.9 112 120-241 124-247 (299)
43 1zj6_A ADP-ribosylation factor 99.3 2.3E-12 7.9E-17 103.2 8.0 156 31-248 15-179 (187)
44 2bov_A RAla, RAS-related prote 99.3 1.9E-11 6.6E-16 98.9 13.3 158 28-242 10-172 (206)
45 1jwy_B Dynamin A GTPase domain 99.3 9.1E-14 3.1E-18 120.8 -0.9 27 29-55 21-47 (315)
46 3q72_A GTP-binding protein RAD 99.3 9.8E-12 3.4E-16 97.1 10.7 150 34-241 4-158 (166)
47 2wjg_A FEOB, ferrous iron tran 99.3 2.2E-12 7.6E-17 103.1 7.1 158 31-243 6-165 (188)
48 2h57_A ADP-ribosylation factor 99.3 3.3E-12 1.1E-16 102.6 8.1 153 31-241 20-181 (190)
49 1ky3_A GTP-binding protein YPT 99.3 3.4E-11 1.2E-15 95.2 13.7 107 121-241 58-172 (182)
50 1f6b_A SAR1; gtpases, N-termin 99.3 9.5E-12 3.3E-16 101.0 10.5 150 32-241 25-193 (198)
51 1c1y_A RAS-related protein RAP 99.3 5.7E-12 1.9E-16 98.3 8.8 106 121-241 51-161 (167)
52 2xtp_A GTPase IMAP family memb 99.3 4.4E-13 1.5E-17 113.5 2.5 165 30-242 20-203 (260)
53 2il1_A RAB12; G-protein, GDP, 99.3 4.3E-12 1.5E-16 102.3 8.3 106 121-241 75-184 (192)
54 1u8z_A RAS-related protein RAL 99.3 4.6E-12 1.6E-16 98.7 8.1 105 121-241 52-161 (168)
55 2a9k_A RAS-related protein RAL 99.3 7E-12 2.4E-16 99.6 9.2 154 31-241 17-175 (187)
56 1wms_A RAB-9, RAB9, RAS-relate 99.3 2.8E-11 9.4E-16 95.5 12.5 105 121-241 56-168 (177)
57 2lkc_A Translation initiation 99.3 7.2E-12 2.5E-16 99.0 8.6 151 31-241 7-165 (178)
58 2efe_B Small GTP-binding prote 99.3 1.5E-11 5.3E-16 97.3 10.3 111 121-247 61-175 (181)
59 1ek0_A Protein (GTP-binding pr 99.3 2.6E-12 8.8E-17 100.5 5.6 109 121-243 52-165 (170)
60 3tw8_B RAS-related protein RAB 99.3 2.1E-11 7E-16 96.4 10.8 152 31-241 8-165 (181)
61 1z08_A RAS-related protein RAB 99.3 3.3E-11 1.1E-15 94.3 11.8 105 121-241 55-163 (170)
62 1wb1_A Translation elongation 99.3 2.5E-12 8.4E-17 118.6 6.1 162 28-242 15-184 (482)
63 2h17_A ADP-ribosylation factor 99.3 1.1E-11 3.7E-16 98.8 9.1 149 31-241 20-177 (181)
64 1ksh_A ARF-like protein 2; sma 99.3 6.9E-12 2.4E-16 100.1 7.9 152 31-242 17-175 (186)
65 3sjy_A Translation initiation 99.3 4.9E-12 1.7E-16 114.1 7.8 109 121-242 75-187 (403)
66 1zbd_A Rabphilin-3A; G protein 99.3 1.9E-11 6.4E-16 99.0 10.3 106 121-242 57-166 (203)
67 2ce2_X GTPase HRAS; signaling 99.3 4E-11 1.4E-15 93.0 11.8 105 121-241 51-159 (166)
68 1wxq_A GTP-binding protein; st 99.3 7E-12 2.4E-16 112.8 8.3 49 185-239 213-262 (397)
69 2g6b_A RAS-related protein RAB 99.3 2E-11 6.7E-16 96.6 10.0 106 121-242 60-169 (180)
70 2fh5_B SR-beta, signal recogni 99.3 1.7E-11 5.9E-16 100.2 9.9 134 31-216 6-145 (214)
71 1z0f_A RAB14, member RAS oncog 99.3 1E-11 3.5E-16 97.9 8.2 155 31-241 14-172 (179)
72 1m2o_B GTP-binding protein SAR 99.3 1.9E-11 6.5E-16 98.5 9.8 149 33-241 24-186 (190)
73 2gf9_A RAS-related protein RAB 99.3 1.5E-11 5.2E-16 98.5 9.2 105 121-241 71-179 (189)
74 2erx_A GTP-binding protein DI- 99.3 6E-12 2.1E-16 98.5 6.6 107 121-243 51-163 (172)
75 1z0j_A RAB-22, RAS-related pro 99.3 6.8E-12 2.3E-16 98.2 6.9 105 121-241 55-163 (170)
76 2e87_A Hypothetical protein PH 99.3 7.6E-12 2.6E-16 111.0 8.0 160 30-242 165-331 (357)
77 1vg8_A RAS-related protein RAB 99.3 6.8E-11 2.3E-15 95.8 13.0 106 121-242 57-170 (207)
78 3j2k_7 ERF3, eukaryotic polype 99.3 1.4E-11 4.9E-16 112.2 9.9 112 120-239 94-217 (439)
79 3t5d_A Septin-7; GTP-binding p 99.3 3.4E-12 1.2E-16 109.2 5.3 82 151-240 114-197 (274)
80 1r2q_A RAS-related protein RAB 99.3 6.3E-12 2.2E-16 98.2 6.4 107 121-243 55-165 (170)
81 3t1o_A Gliding protein MGLA; G 99.3 7.5E-11 2.6E-15 94.4 13.0 108 121-241 74-186 (198)
82 3q85_A GTP-binding protein REM 99.3 2.1E-11 7.2E-16 95.4 9.4 106 121-241 51-161 (169)
83 3clv_A RAB5 protein, putative; 99.3 4E-11 1.4E-15 96.3 11.2 104 121-241 93-198 (208)
84 3reg_A RHO-like small GTPase; 99.3 1.3E-11 4.3E-16 99.4 8.2 111 121-242 71-183 (194)
85 1g16_A RAS-related protein SEC 99.3 3.1E-11 1.1E-15 94.4 10.2 105 121-242 52-160 (170)
86 1r8s_A ADP-ribosylation factor 99.3 3.8E-11 1.3E-15 93.5 10.6 108 120-242 43-157 (164)
87 1upt_A ARL1, ADP-ribosylation 99.3 1E-11 3.6E-16 97.3 7.4 148 32-241 7-163 (171)
88 1zd9_A ADP-ribosylation factor 99.3 9.8E-12 3.3E-16 99.8 7.3 153 32-243 22-181 (188)
89 2oil_A CATX-8, RAS-related pro 99.2 9.3E-12 3.2E-16 100.0 7.1 102 121-241 74-182 (193)
90 1moz_A ARL1, ADP-ribosylation 99.2 2.4E-11 8.2E-16 96.5 9.5 147 31-241 17-174 (183)
91 3qq5_A Small GTP-binding prote 99.2 4E-13 1.4E-17 121.7 -1.1 161 30-244 32-193 (423)
92 3tkl_A RAS-related protein RAB 99.2 1.7E-11 5.9E-16 98.4 8.6 106 121-242 65-174 (196)
93 1kao_A RAP2A; GTP-binding prot 99.2 6.4E-12 2.2E-16 97.8 5.7 106 121-241 51-160 (167)
94 2fn4_A P23, RAS-related protei 99.2 3.6E-11 1.2E-15 94.9 10.1 156 31-242 8-167 (181)
95 1z2a_A RAS-related protein RAB 99.2 2E-11 6.9E-16 95.2 8.6 105 121-241 54-161 (168)
96 2y8e_A RAB-protein 6, GH09086P 99.2 4.1E-11 1.4E-15 94.4 10.2 106 121-242 63-172 (179)
97 3bc1_A RAS-related protein RAB 99.2 9.4E-11 3.2E-15 93.5 12.5 106 121-242 70-180 (195)
98 2iwr_A Centaurin gamma 1; ANK 99.2 3.2E-11 1.1E-15 95.4 9.3 103 121-241 54-163 (178)
99 1fzq_A ADP-ribosylation factor 99.2 6.8E-11 2.3E-15 94.4 11.2 152 31-242 15-173 (181)
100 2p5s_A RAS and EF-hand domain 99.2 3.5E-11 1.2E-15 97.4 9.6 105 121-241 77-191 (199)
101 3con_A GTPase NRAS; structural 99.2 9.3E-11 3.2E-15 93.8 11.9 104 121-241 69-177 (190)
102 2gf0_A GTP-binding protein DI- 99.2 2.8E-11 9.6E-16 97.4 8.8 105 121-242 56-166 (199)
103 4dsu_A GTPase KRAS, isoform 2B 99.2 1.2E-11 4.3E-16 98.4 6.4 105 121-242 52-161 (189)
104 3t5g_A GTP-binding protein RHE 99.2 1.8E-11 6.2E-16 97.1 7.0 157 31-243 5-165 (181)
105 2hup_A RAS-related protein RAB 99.2 9.6E-11 3.3E-15 95.1 11.5 107 121-242 78-188 (201)
106 3lxx_A GTPase IMAP family memb 99.2 1.9E-11 6.4E-16 102.2 7.4 171 27-241 24-208 (239)
107 2a5j_A RAS-related protein RAB 99.2 4.4E-11 1.5E-15 96.1 9.2 105 121-241 70-178 (191)
108 2hxs_A RAB-26, RAS-related pro 99.2 7.8E-11 2.7E-15 92.9 10.4 108 121-244 56-170 (178)
109 3ihw_A Centg3; RAS, centaurin, 99.2 6.4E-11 2.2E-15 94.9 10.0 103 121-241 67-174 (184)
110 2b6h_A ADP-ribosylation factor 99.2 4.2E-11 1.4E-15 96.6 9.0 152 31-242 28-186 (192)
111 3oes_A GTPase rhebl1; small GT 99.2 5.8E-11 2E-15 96.2 9.9 156 30-242 22-182 (201)
112 3kkq_A RAS-related protein M-R 99.2 4E-11 1.4E-15 95.3 8.7 103 123-241 68-176 (183)
113 4djt_A GTP-binding nuclear pro 99.2 1.1E-11 3.9E-16 101.5 5.6 106 121-242 61-170 (218)
114 2cxx_A Probable GTP-binding pr 99.2 4.1E-11 1.4E-15 95.6 8.6 115 122-242 45-179 (190)
115 1mh1_A RAC1; GTP-binding, GTPa 99.2 5.7E-12 1.9E-16 100.2 3.5 114 121-246 53-179 (186)
116 4a9a_A Ribosome-interacting GT 99.2 7.9E-12 2.7E-16 111.4 4.7 123 28-199 68-195 (376)
117 1x3s_A RAS-related protein RAB 99.2 1.3E-11 4.6E-16 98.9 5.6 103 121-243 64-174 (195)
118 3dz8_A RAS-related protein RAB 99.2 7.1E-11 2.4E-15 94.8 9.8 106 120-241 71-180 (191)
119 3izq_1 HBS1P, elongation facto 99.2 1.9E-11 6.6E-16 115.6 7.4 110 120-237 244-362 (611)
120 4gzl_A RAS-related C3 botulinu 99.2 9.8E-12 3.3E-16 101.3 4.6 109 121-241 78-199 (204)
121 3cbq_A GTP-binding protein REM 99.2 2E-10 6.7E-15 93.0 12.2 104 121-242 72-183 (195)
122 2yc2_C IFT27, small RAB-relate 99.2 1.5E-11 5.3E-16 99.5 5.6 105 121-241 73-186 (208)
123 2bcg_Y Protein YP2, GTP-bindin 99.2 9.8E-11 3.4E-15 95.0 10.4 106 121-242 57-166 (206)
124 2ged_A SR-beta, signal recogni 99.2 5E-11 1.7E-15 95.6 8.5 133 30-215 46-185 (193)
125 3mca_A HBS1, elongation factor 99.2 2.3E-12 8E-17 121.5 0.3 108 120-235 254-371 (592)
126 2atx_A Small GTP binding prote 99.2 8E-11 2.7E-15 94.6 9.3 110 121-241 66-187 (194)
127 2bme_A RAB4A, RAS-related prot 99.2 1.4E-10 4.7E-15 92.3 10.5 106 121-242 59-168 (186)
128 2o52_A RAS-related protein RAB 99.2 8.5E-11 2.9E-15 95.3 9.5 106 121-242 74-183 (200)
129 2x2e_A Dynamin-1; nitration, h 99.2 3.1E-12 1E-16 113.4 0.9 27 29-55 28-54 (353)
130 2fv8_A H6, RHO-related GTP-bin 99.2 4.5E-11 1.5E-15 97.4 7.7 110 121-242 73-195 (207)
131 3p26_A Elongation factor 1 alp 99.2 2.7E-11 9.3E-16 111.7 6.7 112 119-238 109-229 (483)
132 1z06_A RAS-related protein RAB 99.2 9.2E-12 3.1E-16 99.8 3.0 107 121-243 69-184 (189)
133 3bwd_D RAC-like GTP-binding pr 99.2 7.3E-11 2.5E-15 93.4 8.2 109 121-241 56-175 (182)
134 2fu5_C RAS-related protein RAB 99.2 7.7E-11 2.6E-15 93.6 8.3 106 121-242 57-166 (183)
135 2q3h_A RAS homolog gene family 99.2 1.9E-10 6.6E-15 92.8 10.7 109 121-241 68-189 (201)
136 2x77_A ADP-ribosylation factor 99.2 1.6E-10 5.4E-15 92.4 10.1 149 32-242 22-179 (189)
137 2j1l_A RHO-related GTP-binding 99.2 1.6E-10 5.5E-15 94.7 10.3 110 121-242 82-204 (214)
138 3gj0_A GTP-binding nuclear pro 99.2 9.7E-12 3.3E-16 102.3 2.9 154 31-242 14-170 (221)
139 3lvq_E ARF-GAP with SH3 domain 99.2 6.3E-11 2.1E-15 109.4 8.6 152 33-244 323-481 (497)
140 2f7s_A C25KG, RAS-related prot 99.1 8.3E-11 2.8E-15 96.3 8.2 104 120-242 83-194 (217)
141 2elf_A Protein translation elo 99.1 2.4E-11 8.3E-16 108.3 5.3 151 27-242 16-175 (370)
142 3cpj_B GTP-binding protein YPT 99.1 6.2E-11 2.1E-15 97.8 7.2 105 121-241 62-170 (223)
143 3zvr_A Dynamin-1; hydrolase, D 99.1 1.5E-11 5.1E-16 118.2 3.9 111 120-242 149-273 (772)
144 2gco_A H9, RHO-related GTP-bin 99.1 7.3E-11 2.5E-15 95.7 7.5 109 121-241 73-194 (201)
145 1f60_A Elongation factor EEF1A 99.1 3.7E-11 1.3E-15 110.1 6.3 112 120-239 84-204 (458)
146 2j37_W Signal recognition part 99.1 2.2E-10 7.5E-15 105.7 11.4 153 30-202 99-256 (504)
147 2ew1_A RAS-related protein RAB 99.1 1.6E-10 5.3E-15 94.2 9.3 155 32-242 26-184 (201)
148 3o47_A ADP-ribosylation factor 99.1 7.3E-11 2.5E-15 103.6 7.5 148 33-242 166-322 (329)
149 3cph_A RAS-related protein SEC 99.1 2E-10 6.9E-15 93.4 9.6 155 31-242 19-177 (213)
150 1zun_B Sulfate adenylate trans 99.1 5.1E-11 1.7E-15 108.4 6.6 107 120-239 103-216 (434)
151 3r7w_A Gtpase1, GTP-binding pr 99.1 4.4E-11 1.5E-15 104.0 5.6 159 34-240 5-174 (307)
152 1s0u_A EIF-2-gamma, translatio 99.1 1.9E-10 6.5E-15 103.8 9.7 107 121-242 81-193 (408)
153 1udx_A The GTP-binding protein 99.1 2.2E-11 7.4E-16 110.1 3.3 160 33-242 158-320 (416)
154 1kk1_A EIF2gamma; initiation o 99.1 5.3E-11 1.8E-15 107.5 5.8 109 121-242 83-195 (410)
155 2atv_A RERG, RAS-like estrogen 99.1 5E-11 1.7E-15 96.1 4.9 104 121-241 76-185 (196)
156 3kl4_A SRP54, signal recogniti 99.1 1.1E-09 3.7E-14 99.2 14.0 150 31-201 96-253 (433)
157 2qag_C Septin-7; cell cycle, c 99.1 1E-10 3.5E-15 105.7 7.0 43 11-54 11-53 (418)
158 2j69_A Bacterial dynamin-like 99.1 1.6E-11 5.6E-16 117.8 1.6 72 121-201 174-245 (695)
159 1nrj_B SR-beta, signal recogni 99.1 2.9E-10 1E-14 93.0 8.9 119 30-203 10-137 (218)
160 1jny_A EF-1-alpha, elongation 99.1 3.1E-10 1.1E-14 103.3 9.7 112 119-238 82-204 (435)
161 3c5c_A RAS-like protein 12; GD 99.1 3.9E-10 1.3E-14 90.4 9.1 104 121-241 69-180 (187)
162 3izy_P Translation initiation 99.1 6.3E-12 2.1E-16 116.9 -1.7 157 31-241 3-162 (537)
163 2j0v_A RAC-like GTP-binding pr 99.1 1.2E-10 4.1E-15 94.9 6.0 110 121-242 57-175 (212)
164 3tr5_A RF-3, peptide chain rel 99.1 2.2E-10 7.7E-15 106.5 8.3 70 120-202 81-150 (528)
165 2c78_A Elongation factor TU-A; 99.1 3.9E-11 1.3E-15 108.2 2.6 101 120-233 74-180 (405)
166 1h65_A Chloroplast outer envel 99.1 5.8E-10 2E-14 95.0 9.6 24 31-54 38-61 (270)
167 2qag_A Septin-2, protein NEDD5 99.1 4.9E-11 1.7E-15 106.1 2.9 43 11-54 17-59 (361)
168 3th5_A RAS-related C3 botulinu 98.6 1.8E-11 6.1E-16 99.4 0.0 110 121-242 78-200 (204)
169 2v3c_C SRP54, signal recogniti 99.0 2.6E-10 8.8E-15 103.6 7.5 145 31-201 98-253 (432)
170 1m7b_A RND3/RHOE small GTP-bin 99.0 3.2E-10 1.1E-14 90.4 6.7 109 121-241 55-177 (184)
171 3dpu_A RAB family protein; roc 99.0 3.1E-10 1.1E-14 105.8 7.6 105 120-243 97-204 (535)
172 2g3y_A GTP-binding protein GEM 99.0 1.3E-09 4.5E-14 89.6 10.4 107 121-242 87-198 (211)
173 1r5b_A Eukaryotic peptide chai 99.0 1.9E-10 6.5E-15 105.6 5.2 112 120-239 120-244 (467)
174 3q3j_B RHO-related GTP-binding 99.0 4E-10 1.4E-14 92.4 6.7 110 121-242 75-198 (214)
175 1zo1_I IF2, translation initia 99.0 4.9E-11 1.7E-15 110.0 1.2 156 31-242 3-162 (501)
176 1gwn_A RHO-related GTP-binding 99.0 4.4E-10 1.5E-14 91.7 6.6 109 121-241 76-198 (205)
177 3llu_A RAS-related GTP-binding 99.0 8.2E-10 2.8E-14 89.1 8.1 110 120-241 68-191 (196)
178 1g7s_A Translation initiation 99.0 4.6E-10 1.6E-14 105.7 7.6 109 121-242 70-213 (594)
179 1d2e_A Elongation factor TU (E 99.0 1.9E-10 6.5E-15 103.5 4.5 109 120-241 65-189 (397)
180 2xex_A Elongation factor G; GT 99.0 1.6E-09 5.4E-14 104.0 10.0 70 120-202 74-143 (693)
181 2h5e_A Peptide chain release f 99.0 6.1E-10 2.1E-14 103.6 6.3 110 120-243 81-191 (529)
182 3t34_A Dynamin-related protein 99.0 6.1E-10 2.1E-14 98.8 5.9 43 13-55 10-57 (360)
183 1j8m_F SRP54, signal recogniti 99.0 1E-08 3.5E-13 88.6 13.4 163 15-200 78-253 (297)
184 3def_A T7I23.11 protein; chlor 98.9 8.8E-10 3E-14 93.4 6.6 24 31-54 35-58 (262)
185 4dkx_A RAS-related protein RAB 98.9 1.1E-08 3.9E-13 84.3 13.0 105 121-241 62-170 (216)
186 2ywe_A GTP-binding protein LEP 98.9 1.6E-09 5.3E-14 102.0 8.6 104 121-242 73-179 (600)
187 2qnr_A Septin-2, protein NEDD5 98.9 1.5E-09 5.3E-14 94.0 7.6 39 15-54 2-40 (301)
188 2wkq_A NPH1-1, RAS-related C3 98.9 6.9E-10 2.4E-14 96.4 5.3 109 121-241 203-324 (332)
189 3l0i_B RAS-related protein RAB 98.9 9.6E-11 3.3E-15 94.7 -0.3 109 121-245 82-194 (199)
190 2zej_A Dardarin, leucine-rich 98.9 2.8E-10 9.5E-15 90.9 2.2 112 120-242 55-173 (184)
191 2cjw_A GTP-binding protein GEM 98.9 3.3E-09 1.1E-13 85.5 8.0 106 122-242 57-167 (192)
192 1xjc_A MOBB protein homolog; s 98.9 3.3E-09 1.1E-13 84.2 7.5 95 31-131 3-107 (169)
193 3cb4_D GTP-binding protein LEP 98.9 2E-09 6.8E-14 101.4 6.9 104 121-242 71-177 (599)
194 1dar_A EF-G, elongation factor 98.9 7.1E-09 2.4E-13 99.4 10.6 135 30-202 10-145 (691)
195 2ffh_A Protein (FFH); SRP54, s 98.9 1.7E-08 5.8E-13 91.3 11.9 166 15-201 80-252 (425)
196 3ec1_A YQEH GTPase; atnos1, at 98.8 3.2E-10 1.1E-14 101.0 0.1 134 34-215 164-303 (369)
197 3avx_A Elongation factor TS, e 98.8 6.5E-09 2.2E-13 103.3 7.1 110 120-242 358-481 (1289)
198 3h2y_A GTPase family protein; 98.8 9E-10 3.1E-14 98.1 0.3 123 34-203 162-290 (368)
199 2xxa_A Signal recognition part 98.8 5E-08 1.7E-12 88.5 11.8 148 31-201 99-255 (433)
200 2f9l_A RAB11B, member RAS onco 98.7 2.4E-08 8.3E-13 80.5 7.6 104 122-241 55-162 (199)
201 3c5h_A Glucocorticoid receptor 98.7 1.1E-08 3.7E-13 86.3 5.4 81 152-241 162-249 (255)
202 1zu4_A FTSY; GTPase, signal re 98.7 1.2E-07 4E-12 82.8 10.4 155 31-200 104-268 (320)
203 1oix_A RAS-related protein RAB 98.7 2.2E-07 7.5E-12 74.5 11.4 103 123-241 80-186 (191)
204 1vma_A Cell division protein F 98.7 2.9E-07 1E-11 79.7 12.9 181 31-237 103-291 (306)
205 2dy1_A Elongation factor G; tr 98.7 3.6E-08 1.2E-12 94.2 7.6 67 120-199 73-139 (665)
206 3e70_C DPA, signal recognition 98.7 2E-07 6.7E-12 81.6 11.7 151 31-200 128-282 (328)
207 2rdo_7 EF-G, elongation factor 98.6 9.1E-08 3.1E-12 91.9 10.2 82 120-215 81-162 (704)
208 2px0_A Flagellar biosynthesis 98.6 1.7E-07 5.7E-12 81.0 10.5 146 31-201 104-254 (296)
209 1ls1_A Signal recognition part 98.6 2E-07 6.7E-12 80.4 10.9 167 13-200 78-251 (295)
210 3sop_A Neuronal-specific septi 98.6 5.7E-08 1.9E-12 82.8 6.3 61 151-217 110-171 (270)
211 1jal_A YCHF protein; nucleotid 98.5 7.2E-08 2.5E-12 85.4 6.0 103 34-164 4-108 (363)
212 2yhs_A FTSY, cell division pro 98.5 3.4E-07 1.2E-11 83.9 10.4 151 33-200 294-452 (503)
213 2qag_B Septin-6, protein NEDD5 98.5 9.5E-08 3.2E-12 86.2 6.7 42 11-54 16-64 (427)
214 1np6_A Molybdopterin-guanine d 98.5 2.6E-08 8.9E-13 79.4 2.3 40 31-70 5-46 (174)
215 1n0u_A EF-2, elongation factor 98.4 5.1E-08 1.8E-12 95.4 2.1 68 120-200 97-164 (842)
216 2ohf_A Protein OLA1, GTP-bindi 98.4 2.3E-07 7.8E-12 83.0 6.1 104 33-164 23-128 (396)
217 1tq4_A IIGP1, interferon-induc 98.4 2.3E-07 8E-12 83.5 5.5 23 32-54 69-91 (413)
218 3vqt_A RF-3, peptide chain rel 98.3 1.2E-06 3.9E-11 81.9 9.0 83 118-215 97-180 (548)
219 3j25_A Tetracycline resistance 98.3 2.7E-07 9.2E-12 87.7 3.4 72 118-202 64-135 (638)
220 1rj9_A FTSY, signal recognitio 98.3 8.2E-06 2.8E-10 70.5 12.0 152 31-200 101-261 (304)
221 4dzz_A Plasmid partitioning pr 98.3 1.3E-05 4.4E-10 64.4 12.4 148 33-218 2-157 (206)
222 1puj_A YLQF, conserved hypothe 98.2 9.2E-07 3.2E-11 75.7 4.6 34 33-70 121-154 (282)
223 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1.3E-07 4.5E-12 84.6 -1.3 23 32-54 20-42 (392)
224 2dby_A GTP-binding protein; GD 98.2 3.5E-07 1.2E-11 81.3 1.4 21 34-54 3-23 (368)
225 3szr_A Interferon-induced GTP- 98.2 1.4E-06 4.6E-11 82.4 4.9 48 8-55 7-68 (608)
226 4fn5_A EF-G 1, elongation fact 98.1 2.1E-06 7.1E-11 82.6 6.0 70 120-202 84-153 (709)
227 3end_A Light-independent proto 98.1 2E-05 6.8E-10 67.8 11.0 41 30-70 39-81 (307)
228 3r7w_B Gtpase2, GTP-binding pr 98.1 1.7E-05 5.8E-10 69.1 10.2 106 121-241 46-168 (331)
229 2ihy_A ABC transporter, ATP-bi 98.0 1.8E-06 6.1E-11 73.8 3.1 48 8-55 18-70 (279)
230 3cwq_A Para family chromosome 98.0 0.00013 4.5E-09 59.2 14.1 139 35-217 4-147 (209)
231 2pcj_A ABC transporter, lipopr 98.0 2.6E-06 8.8E-11 70.4 3.2 45 11-55 4-53 (224)
232 3b9q_A Chloroplast SRP recepto 98.0 8.5E-05 2.9E-09 64.1 13.0 182 32-237 100-288 (302)
233 1f5n_A Interferon-induced guan 98.0 3.9E-06 1.3E-10 78.8 4.8 26 29-54 35-60 (592)
234 1ji0_A ABC transporter; ATP bi 98.0 2.9E-06 9.8E-11 70.9 3.3 46 10-55 5-55 (240)
235 3bfv_A CAPA1, CAPB2, membrane 98.0 3.3E-05 1.1E-09 65.6 9.9 39 31-69 81-122 (271)
236 4g1u_C Hemin import ATP-bindin 98.0 3.7E-06 1.3E-10 71.4 3.9 45 10-54 10-59 (266)
237 1g6h_A High-affinity branched- 98.0 3E-06 1E-10 71.5 3.2 45 11-55 7-56 (257)
238 1b0u_A Histidine permease; ABC 98.0 2.6E-06 9E-11 72.1 2.8 45 11-55 6-55 (262)
239 2og2_A Putative signal recogni 97.9 5.2E-05 1.8E-09 67.0 10.6 181 32-237 157-345 (359)
240 2zu0_C Probable ATP-dependent 97.9 3.9E-06 1.3E-10 71.2 3.0 44 11-54 20-68 (267)
241 3gfo_A Cobalt import ATP-bindi 97.9 5.1E-06 1.8E-10 70.8 3.6 45 10-54 6-56 (275)
242 3cio_A ETK, tyrosine-protein k 97.9 9E-05 3.1E-09 63.8 11.5 39 31-69 103-144 (299)
243 2olj_A Amino acid ABC transpor 97.9 3.8E-06 1.3E-10 71.2 2.6 45 11-55 24-73 (263)
244 3kjh_A CO dehydrogenase/acetyl 97.9 8.6E-05 3E-09 61.2 10.7 35 35-69 3-39 (254)
245 2d2e_A SUFC protein; ABC-ATPas 97.9 5.4E-06 1.9E-10 69.6 3.4 44 11-54 3-51 (250)
246 1vpl_A ABC transporter, ATP-bi 97.9 4.3E-06 1.5E-10 70.6 2.7 45 11-55 15-64 (256)
247 3cnl_A YLQF, putative uncharac 97.9 6.9E-06 2.4E-10 69.5 3.8 22 33-54 100-121 (262)
248 1mv5_A LMRA, multidrug resista 97.9 6.8E-06 2.3E-10 68.7 3.3 44 12-55 2-51 (243)
249 2cbz_A Multidrug resistance-as 97.8 7.5E-06 2.6E-10 68.2 3.3 45 11-55 3-54 (237)
250 1sgw_A Putative ABC transporte 97.8 6.1E-06 2.1E-10 67.8 2.6 44 11-55 10-58 (214)
251 1z47_A CYSA, putative ABC-tran 97.8 9.8E-06 3.4E-10 71.5 4.1 47 8-54 11-63 (355)
252 3la6_A Tyrosine-protein kinase 97.8 0.00014 4.9E-09 62.1 11.4 152 31-200 91-268 (286)
253 3fvq_A Fe(3+) IONS import ATP- 97.8 7.4E-06 2.5E-10 72.4 3.2 45 11-55 4-53 (359)
254 2nq2_C Hypothetical ABC transp 97.8 8.3E-06 2.8E-10 68.6 3.2 45 11-55 4-54 (253)
255 2ixe_A Antigen peptide transpo 97.8 1.1E-05 3.6E-10 68.7 3.8 46 10-55 15-68 (271)
256 3ea0_A ATPase, para family; al 97.8 0.00045 1.5E-08 56.8 13.7 38 32-69 4-45 (245)
257 2pze_A Cystic fibrosis transme 97.8 1.2E-05 4E-10 66.7 3.7 45 11-55 6-57 (229)
258 3gd7_A Fusion complex of cysti 97.8 1.5E-05 5.2E-10 71.2 4.6 48 7-54 15-69 (390)
259 2yz2_A Putative ABC transporte 97.8 8.7E-06 3E-10 69.0 2.8 45 11-55 2-56 (266)
260 2ff7_A Alpha-hemolysin translo 97.8 1E-05 3.5E-10 67.8 3.0 45 11-55 7-58 (247)
261 2ph1_A Nucleotide-binding prot 97.8 0.00039 1.3E-08 58.3 12.7 37 34-70 21-59 (262)
262 3rlf_A Maltose/maltodextrin im 97.8 1.1E-05 3.8E-10 71.7 3.0 44 11-54 3-51 (381)
263 3tif_A Uncharacterized ABC tra 97.7 8.7E-06 3E-10 67.7 2.1 44 11-54 1-53 (235)
264 1wcv_1 SOJ, segregation protei 97.7 0.00024 8.2E-09 59.3 10.9 39 31-69 5-46 (257)
265 2ghi_A Transport protein; mult 97.7 1.6E-05 5.6E-10 67.1 3.5 46 10-55 16-69 (260)
266 3tui_C Methionine import ATP-b 97.7 1.3E-05 4.4E-10 70.9 2.9 48 7-54 20-76 (366)
267 2it1_A 362AA long hypothetical 97.7 1.6E-05 5.5E-10 70.3 3.3 45 11-55 3-52 (362)
268 1hyq_A MIND, cell division inh 97.7 0.00032 1.1E-08 58.6 11.2 36 34-69 5-42 (263)
269 1g29_1 MALK, maltose transport 97.7 1.7E-05 5.7E-10 70.5 3.3 45 11-55 3-52 (372)
270 2yyz_A Sugar ABC transporter, 97.7 1.5E-05 5.2E-10 70.4 3.0 44 11-54 3-51 (359)
271 3k9g_A PF-32 protein; ssgcid, 97.7 0.00077 2.6E-08 56.4 13.0 43 28-70 23-67 (267)
272 3nh6_A ATP-binding cassette SU 97.6 2E-05 6.9E-10 68.1 3.0 45 10-54 52-102 (306)
273 1v43_A Sugar-binding transport 97.6 2E-05 6.7E-10 70.0 3.0 44 11-54 11-59 (372)
274 3d31_A Sulfate/molybdate ABC t 97.6 1.8E-05 6.1E-10 69.7 2.6 43 12-55 2-49 (348)
275 1g3q_A MIND ATPase, cell divis 97.6 0.00082 2.8E-08 55.0 12.4 37 33-69 3-42 (237)
276 1oxx_K GLCV, glucose, ABC tran 97.6 1.6E-05 5.5E-10 70.1 1.6 44 11-54 3-53 (353)
277 2pjz_A Hypothetical protein ST 97.6 2.3E-05 7.7E-10 66.4 2.1 44 11-54 1-52 (263)
278 2onk_A Molybdate/tungstate ABC 97.5 3.1E-05 1.1E-09 64.6 2.6 42 12-55 2-47 (240)
279 3q5d_A Atlastin-1; G protein, 97.5 3.6E-05 1.2E-09 69.9 2.9 27 28-54 63-89 (447)
280 2afh_E Nitrogenase iron protei 97.5 0.00084 2.9E-08 56.9 10.8 39 32-70 2-42 (289)
281 3q9l_A Septum site-determining 97.5 0.001 3.5E-08 55.1 11.2 37 33-69 3-42 (260)
282 1cp2_A CP2, nitrogenase iron p 97.5 0.00094 3.2E-08 55.8 10.9 38 33-70 2-41 (269)
283 1htw_A HI0065; nucleotide-bind 97.4 1.5E-05 5E-10 62.3 -0.5 43 12-54 8-55 (158)
284 2xj4_A MIPZ; replication, cell 97.4 0.002 7E-08 54.6 12.1 36 33-68 5-43 (286)
285 2qi9_C Vitamin B12 import ATP- 97.3 0.00011 3.7E-09 61.6 3.4 41 11-55 4-49 (249)
286 2oze_A ORF delta'; para, walke 97.3 0.0014 4.6E-08 55.8 10.4 38 33-70 35-77 (298)
287 3b5x_A Lipid A export ATP-bind 97.3 0.00017 5.9E-09 67.6 5.1 45 10-54 340-391 (582)
288 2iw3_A Elongation factor 3A; a 97.3 0.00016 5.4E-09 71.4 4.4 47 8-54 432-483 (986)
289 1kgd_A CASK, peripheral plasma 97.2 0.00018 6.2E-09 56.8 3.2 23 33-55 6-28 (180)
290 1zp6_A Hypothetical protein AT 97.2 0.00023 8E-09 56.3 3.4 23 33-55 10-32 (191)
291 3b60_A Lipid A export ATP-bind 97.1 0.00029 1E-08 66.1 4.4 46 10-55 340-392 (582)
292 3qf4_B Uncharacterized ABC tra 97.1 0.00038 1.3E-08 65.5 5.1 45 11-55 354-404 (598)
293 3ney_A 55 kDa erythrocyte memb 97.1 0.00026 8.8E-09 57.2 3.4 29 28-56 15-43 (197)
294 3tr0_A Guanylate kinase, GMP k 97.1 0.00024 8.4E-09 56.8 3.2 23 33-55 8-30 (205)
295 3kb2_A SPBC2 prophage-derived 97.1 0.00027 9.1E-09 54.8 3.1 22 33-54 2-23 (173)
296 3kta_A Chromosome segregation 97.1 0.0004 1.4E-08 54.6 4.1 41 12-53 7-47 (182)
297 3lw7_A Adenylate kinase relate 97.1 0.00026 9E-09 54.7 3.0 20 33-52 2-21 (179)
298 3ozx_A RNAse L inhibitor; ATP 97.1 0.00023 7.8E-09 66.2 2.9 39 15-54 3-47 (538)
299 3a00_A Guanylate kinase, GMP k 97.1 0.00023 7.7E-09 56.6 2.5 22 34-55 3-24 (186)
300 3qf4_A ABC transporter, ATP-bi 97.1 0.00027 9.1E-09 66.5 3.3 45 11-55 341-392 (587)
301 3t61_A Gluconokinase; PSI-biol 97.1 0.00025 8.5E-09 56.9 2.7 23 32-54 18-40 (202)
302 3qxc_A Dethiobiotin synthetase 97.0 0.011 3.7E-07 49.2 12.7 40 26-65 15-57 (242)
303 1byi_A Dethiobiotin synthase; 97.0 0.04 1.4E-06 44.3 15.9 33 33-65 2-37 (224)
304 1ye8_A Protein THEP1, hypothet 97.0 0.00035 1.2E-08 55.4 3.2 21 34-54 2-22 (178)
305 2v9p_A Replication protein E1; 97.0 4.9E-05 1.7E-09 65.7 -2.0 42 12-54 102-148 (305)
306 4a82_A Cystic fibrosis transme 97.0 0.0003 1E-08 65.9 3.2 45 11-55 339-390 (578)
307 1lvg_A Guanylate kinase, GMP k 97.0 0.00028 9.5E-09 56.8 2.6 22 33-54 5-26 (198)
308 2bbs_A Cystic fibrosis transme 97.0 0.0003 1E-08 60.2 2.9 43 11-55 40-87 (290)
309 2b8t_A Thymidine kinase; deoxy 97.0 0.0013 4.6E-08 54.0 6.7 39 31-69 11-51 (223)
310 2f1r_A Molybdopterin-guanine d 97.0 0.00029 9.9E-09 55.6 2.5 37 32-68 2-40 (171)
311 1znw_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 56.2 3.2 22 34-55 22-43 (207)
312 1kag_A SKI, shikimate kinase I 97.0 0.00033 1.1E-08 54.5 2.6 22 33-54 5-26 (173)
313 2bdt_A BH3686; alpha-beta prot 97.0 0.00042 1.4E-08 54.9 3.2 22 33-54 3-24 (189)
314 3tau_A Guanylate kinase, GMP k 97.0 0.00041 1.4E-08 56.1 3.2 25 32-56 8-32 (208)
315 3c8u_A Fructokinase; YP_612366 97.0 0.00038 1.3E-08 56.2 2.9 37 31-67 21-59 (208)
316 1s96_A Guanylate kinase, GMP k 96.9 0.00042 1.4E-08 56.8 3.2 24 32-55 16-39 (219)
317 4gp7_A Metallophosphoesterase; 96.9 0.00043 1.5E-08 54.3 3.0 21 33-53 10-30 (171)
318 1nks_A Adenylate kinase; therm 96.9 0.00049 1.7E-08 54.2 3.4 32 33-64 2-35 (194)
319 1qhx_A CPT, protein (chloramph 96.9 0.00047 1.6E-08 53.9 3.2 23 33-55 4-26 (178)
320 3hr8_A Protein RECA; alpha and 96.9 0.0041 1.4E-07 54.7 9.4 89 34-134 63-153 (356)
321 1ex7_A Guanylate kinase; subst 96.9 0.00045 1.5E-08 55.2 2.9 23 35-57 4-26 (186)
322 1yqt_A RNAse L inhibitor; ATP- 96.9 0.00046 1.6E-08 64.2 3.3 47 9-55 18-70 (538)
323 2yl4_A ATP-binding cassette SU 96.9 0.00033 1.1E-08 65.9 2.4 44 12-55 342-393 (595)
324 3nwj_A ATSK2; P loop, shikimat 96.9 0.00016 5.5E-09 60.6 0.2 44 11-54 17-70 (250)
325 2iw3_A Elongation factor 3A; a 96.9 0.00036 1.2E-08 68.9 2.6 46 10-55 670-722 (986)
326 2ehv_A Hypothetical protein PH 96.9 0.00053 1.8E-08 56.4 3.2 34 34-67 32-68 (251)
327 2qt1_A Nicotinamide riboside k 96.9 0.00096 3.3E-08 53.6 4.6 34 32-67 21-54 (207)
328 1ly1_A Polynucleotide kinase; 96.9 0.00062 2.1E-08 53.1 3.4 22 33-54 3-24 (181)
329 3asz_A Uridine kinase; cytidin 96.9 0.0006 2.1E-08 54.9 3.3 35 33-68 7-41 (211)
330 2qor_A Guanylate kinase; phosp 96.8 0.00051 1.8E-08 55.2 2.9 26 31-56 11-36 (204)
331 4eun_A Thermoresistant glucoki 96.8 0.00059 2E-08 54.7 3.2 23 32-54 29-51 (200)
332 2jeo_A Uridine-cytidine kinase 96.8 0.00057 1.9E-08 56.7 3.2 21 34-54 27-47 (245)
333 2j41_A Guanylate kinase; GMP, 96.8 0.0006 2.1E-08 54.5 3.2 23 33-55 7-29 (207)
334 2obl_A ESCN; ATPase, hydrolase 96.8 0.0002 7E-09 62.9 0.3 46 9-55 43-94 (347)
335 1z6g_A Guanylate kinase; struc 96.8 0.00048 1.7E-08 56.2 2.6 24 34-57 25-48 (218)
336 1knq_A Gluconate kinase; ALFA/ 96.8 0.00079 2.7E-08 52.5 3.6 23 32-54 8-30 (175)
337 3bk7_A ABC transporter ATP-bin 96.8 0.00058 2E-08 64.4 3.0 41 15-55 95-140 (607)
338 2rhm_A Putative kinase; P-loop 96.8 0.00091 3.1E-08 52.8 3.8 23 32-54 5-27 (193)
339 3iqw_A Tail-anchored protein t 96.7 0.0039 1.3E-07 54.4 7.9 41 30-70 14-56 (334)
340 1jjv_A Dephospho-COA kinase; P 96.7 0.00086 2.9E-08 53.8 3.4 22 33-54 3-24 (206)
341 2if2_A Dephospho-COA kinase; a 96.7 0.00085 2.9E-08 53.7 3.3 22 33-54 2-23 (204)
342 2yvu_A Probable adenylyl-sulfa 96.7 0.00097 3.3E-08 52.6 3.6 35 31-65 12-48 (186)
343 2zr9_A Protein RECA, recombina 96.7 0.0039 1.3E-07 54.7 7.8 88 34-133 63-152 (349)
344 3uie_A Adenylyl-sulfate kinase 96.7 0.00099 3.4E-08 53.4 3.6 24 31-54 24-47 (200)
345 2bbw_A Adenylate kinase 4, AK4 96.7 0.00084 2.9E-08 55.6 3.2 23 32-54 27-49 (246)
346 1ukz_A Uridylate kinase; trans 96.7 0.0012 4.1E-08 52.7 4.0 28 28-55 11-38 (203)
347 2cvh_A DNA repair and recombin 96.7 0.0011 3.8E-08 53.3 3.8 34 34-68 22-55 (220)
348 3lnc_A Guanylate kinase, GMP k 96.7 0.00055 1.9E-08 56.2 1.9 23 33-55 28-51 (231)
349 2eyu_A Twitching motility prot 96.7 0.00086 2.9E-08 56.5 3.1 23 33-55 26-48 (261)
350 1xp8_A RECA protein, recombina 96.7 0.0059 2E-07 53.9 8.7 85 34-133 76-165 (366)
351 1kht_A Adenylate kinase; phosp 96.7 0.001 3.4E-08 52.4 3.2 23 33-55 4-26 (192)
352 3tqc_A Pantothenate kinase; bi 96.7 0.0013 4.6E-08 57.0 4.2 36 32-67 92-131 (321)
353 3vaa_A Shikimate kinase, SK; s 96.6 0.001 3.5E-08 53.2 3.2 23 32-54 25-47 (199)
354 3iij_A Coilin-interacting nucl 96.6 0.00097 3.3E-08 52.3 2.9 24 31-54 10-33 (180)
355 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.001 3.5E-08 55.7 3.2 25 31-55 3-27 (260)
356 4a74_A DNA repair and recombin 96.6 0.0011 3.8E-08 53.7 3.3 21 34-54 27-47 (231)
357 3trf_A Shikimate kinase, SK; a 96.6 0.0011 3.7E-08 52.2 3.1 23 32-54 5-27 (185)
358 3b85_A Phosphate starvation-in 96.6 0.00087 3E-08 54.5 2.6 35 20-54 9-44 (208)
359 3bk7_A ABC transporter ATP-bin 96.6 0.0017 5.9E-08 61.1 5.0 60 8-68 354-426 (607)
360 1cke_A CK, MSSA, protein (cyti 96.6 0.0011 3.7E-08 53.9 3.2 22 33-54 6-27 (227)
361 3cm0_A Adenylate kinase; ATP-b 96.6 0.0014 4.6E-08 51.5 3.6 22 33-54 5-26 (186)
362 1rz3_A Hypothetical protein rb 96.6 0.0015 5E-08 52.4 3.8 37 31-67 21-59 (201)
363 1gvn_B Zeta; postsegregational 96.6 0.0018 6.1E-08 55.2 4.4 25 31-55 32-56 (287)
364 2dpy_A FLII, flagellum-specifi 96.6 0.00037 1.3E-08 63.1 0.1 46 9-55 129-180 (438)
365 2c95_A Adenylate kinase 1; tra 96.6 0.0013 4.4E-08 52.0 3.3 24 31-54 8-31 (196)
366 1cr0_A DNA primase/helicase; R 96.6 0.0021 7.1E-08 54.7 4.8 35 34-68 37-74 (296)
367 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0012 4.3E-08 53.4 3.2 35 34-68 25-61 (235)
368 2ze6_A Isopentenyl transferase 96.5 0.0013 4.4E-08 55.0 3.3 23 33-55 2-24 (253)
369 1qf9_A UMP/CMP kinase, protein 96.5 0.0017 5.9E-08 51.0 3.9 23 32-54 6-28 (194)
370 1y63_A LMAJ004144AAA protein; 96.5 0.0014 4.7E-08 51.8 3.3 24 31-54 9-32 (184)
371 1u94_A RECA protein, recombina 96.5 0.0073 2.5E-07 53.1 8.3 89 34-134 65-155 (356)
372 4f4c_A Multidrug resistance pr 96.5 0.001 3.5E-08 68.1 3.1 44 11-54 1076-1127(1321)
373 3ozx_A RNAse L inhibitor; ATP 96.5 0.0016 5.6E-08 60.4 4.2 48 8-55 266-317 (538)
374 3j16_B RLI1P; ribosome recycli 96.5 0.0012 4.1E-08 62.2 3.3 41 15-55 81-126 (608)
375 2iyv_A Shikimate kinase, SK; t 96.5 0.001 3.4E-08 52.3 2.3 22 33-54 3-24 (184)
376 1e6c_A Shikimate kinase; phosp 96.5 0.0011 3.6E-08 51.5 2.4 23 32-54 2-24 (173)
377 1p9r_A General secretion pathw 96.5 0.0022 7.5E-08 57.7 4.8 54 13-66 145-203 (418)
378 2plr_A DTMP kinase, probable t 96.5 0.0015 5E-08 52.3 3.2 23 33-55 5-27 (213)
379 2i3b_A HCR-ntpase, human cance 96.5 0.0011 3.8E-08 53.0 2.5 21 34-54 3-23 (189)
380 3aez_A Pantothenate kinase; tr 96.5 0.0014 4.6E-08 56.7 3.2 37 32-68 90-130 (312)
381 1via_A Shikimate kinase; struc 96.5 0.0012 4.1E-08 51.6 2.6 23 32-54 4-26 (175)
382 2v54_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 51.9 3.4 28 33-60 5-32 (204)
383 2bwj_A Adenylate kinase 5; pho 96.5 0.0014 4.8E-08 51.9 3.0 23 32-54 12-34 (199)
384 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0015 5.1E-08 60.7 3.5 60 8-68 284-356 (538)
385 2jaq_A Deoxyguanosine kinase; 96.5 0.0014 4.9E-08 52.0 3.0 22 34-55 2-23 (205)
386 2rcn_A Probable GTPase ENGC; Y 96.5 0.0014 4.8E-08 57.7 3.2 22 34-55 217-238 (358)
387 2x8a_A Nuclear valosin-contain 96.5 0.0069 2.4E-07 51.1 7.4 21 35-55 47-67 (274)
388 2wwf_A Thymidilate kinase, put 96.5 0.0017 5.8E-08 52.0 3.4 24 32-55 10-33 (212)
389 1tev_A UMP-CMP kinase; ploop, 96.4 0.0017 5.9E-08 51.1 3.3 22 33-54 4-25 (196)
390 3fkq_A NTRC-like two-domain pr 96.4 0.025 8.4E-07 49.8 11.1 40 28-67 139-181 (373)
391 2yv5_A YJEQ protein; hydrolase 96.4 0.0015 5.2E-08 56.1 3.2 22 33-55 166-187 (302)
392 2vli_A Antibiotic resistance p 96.4 0.0011 3.7E-08 51.9 2.0 24 32-55 5-28 (183)
393 1gtv_A TMK, thymidylate kinase 96.4 0.0011 3.7E-08 53.3 2.0 32 34-65 2-35 (214)
394 2oap_1 GSPE-2, type II secreti 96.4 0.0029 1E-07 58.4 5.1 32 34-65 262-294 (511)
395 3jvv_A Twitching mobility prot 96.4 0.0016 5.5E-08 57.3 3.2 23 33-55 124-146 (356)
396 3ec2_A DNA replication protein 96.4 0.0014 4.9E-08 51.3 2.6 23 32-54 38-60 (180)
397 1nn5_A Similar to deoxythymidy 96.4 0.0021 7E-08 51.6 3.5 24 32-55 9-32 (215)
398 1uf9_A TT1252 protein; P-loop, 96.4 0.0021 7.3E-08 51.0 3.5 25 31-55 7-31 (203)
399 2cdn_A Adenylate kinase; phosp 96.4 0.0021 7.3E-08 51.2 3.5 22 33-54 21-42 (201)
400 2z0h_A DTMP kinase, thymidylat 96.4 0.0018 6.1E-08 51.2 3.0 35 34-69 2-38 (197)
401 1zd8_A GTP:AMP phosphotransfer 96.4 0.002 6.8E-08 52.6 3.3 24 32-55 7-30 (227)
402 2kjq_A DNAA-related protein; s 96.4 0.0026 8.8E-08 48.7 3.7 25 31-55 35-59 (149)
403 3fwy_A Light-independent proto 96.4 0.018 6E-07 49.7 9.4 39 31-69 47-87 (314)
404 1sq5_A Pantothenate kinase; P- 96.3 0.002 6.7E-08 55.5 3.3 35 33-67 81-119 (308)
405 2dr3_A UPF0273 protein PH0284; 96.3 0.0027 9.4E-08 51.9 4.1 36 34-69 25-62 (247)
406 2pbr_A DTMP kinase, thymidylat 96.3 0.0019 6.5E-08 50.8 3.0 22 34-55 2-23 (195)
407 3cnl_A YLQF, putative uncharac 96.3 0.0004 1.4E-08 58.6 -1.1 79 149-242 18-96 (262)
408 3pg5_A Uncharacterized protein 96.3 0.011 3.7E-07 51.9 8.2 38 33-70 2-42 (361)
409 3umf_A Adenylate kinase; rossm 96.3 0.0023 7.9E-08 52.3 3.5 24 31-54 28-51 (217)
410 4f4c_A Multidrug resistance pr 96.3 0.0025 8.5E-08 65.3 4.5 45 11-55 415-467 (1321)
411 1uj2_A Uridine-cytidine kinase 96.3 0.002 6.8E-08 53.6 3.2 24 31-54 21-44 (252)
412 2gza_A Type IV secretion syste 96.3 0.0031 1.1E-07 55.5 4.6 22 34-55 177-198 (361)
413 4e22_A Cytidylate kinase; P-lo 96.3 0.002 6.8E-08 53.7 3.1 23 32-54 27-49 (252)
414 2yv5_A YJEQ protein; hydrolase 96.3 0.0024 8.2E-08 54.8 3.6 87 149-241 76-163 (302)
415 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0034 1.2E-07 54.6 4.6 22 34-55 173-194 (330)
416 3fb4_A Adenylate kinase; psych 96.3 0.0021 7.2E-08 51.8 3.0 21 34-54 2-22 (216)
417 3g5u_A MCG1178, multidrug resi 96.3 0.0025 8.5E-08 65.1 4.2 45 11-55 387-439 (1284)
418 1zuh_A Shikimate kinase; alpha 96.3 0.0022 7.4E-08 49.6 2.9 25 30-54 5-29 (168)
419 3g5u_A MCG1178, multidrug resi 96.3 0.0044 1.5E-07 63.3 5.8 45 11-55 1030-1082(1284)
420 1puj_A YLQF, conserved hypothe 96.3 0.0023 7.9E-08 54.4 3.3 80 148-241 19-100 (282)
421 1zak_A Adenylate kinase; ATP:A 96.3 0.002 6.8E-08 52.3 2.7 23 32-54 5-27 (222)
422 2pez_A Bifunctional 3'-phospho 96.3 0.0023 7.8E-08 50.1 3.0 22 33-54 6-27 (179)
423 3h4m_A Proteasome-activating n 96.2 0.0093 3.2E-07 50.0 7.0 22 34-55 53-74 (285)
424 1u0l_A Probable GTPase ENGC; p 96.2 0.0053 1.8E-07 52.6 5.5 82 150-241 82-167 (301)
425 1aky_A Adenylate kinase; ATP:A 96.2 0.0024 8.4E-08 51.7 3.2 23 32-54 4-26 (220)
426 3be4_A Adenylate kinase; malar 96.2 0.0027 9.1E-08 51.5 3.4 23 32-54 5-27 (217)
427 1t9h_A YLOQ, probable GTPase E 96.2 0.0011 3.8E-08 57.2 1.1 22 33-54 174-195 (307)
428 1vht_A Dephospho-COA kinase; s 96.2 0.0028 9.5E-08 51.3 3.3 22 33-54 5-26 (218)
429 3dl0_A Adenylate kinase; phosp 96.2 0.0026 8.9E-08 51.3 3.2 22 34-55 2-23 (216)
430 2pt5_A Shikimate kinase, SK; a 96.2 0.0025 8.6E-08 49.1 2.9 21 34-54 2-22 (168)
431 2ewv_A Twitching motility prot 96.2 0.0024 8.2E-08 56.5 3.1 23 33-55 137-159 (372)
432 1c9k_A COBU, adenosylcobinamid 96.2 0.013 4.4E-07 46.5 7.0 30 35-66 2-31 (180)
433 1iy2_A ATP-dependent metallopr 96.2 0.00056 1.9E-08 57.8 -1.0 40 15-55 53-96 (278)
434 1u0l_A Probable GTPase ENGC; p 96.2 0.0025 8.5E-08 54.7 3.0 22 33-54 170-191 (301)
435 1odf_A YGR205W, hypothetical 3 96.2 0.0033 1.1E-07 53.7 3.7 26 30-55 29-54 (290)
436 3tlx_A Adenylate kinase 2; str 96.2 0.0033 1.1E-07 52.1 3.6 24 31-54 28-51 (243)
437 1w1w_A Structural maintenance 96.1 0.0032 1.1E-07 56.6 3.7 42 11-54 6-48 (430)
438 3ake_A Cytidylate kinase; CMP 96.1 0.003 1E-07 50.3 3.1 22 33-54 3-24 (208)
439 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0034 1.2E-07 48.0 3.2 39 12-53 6-44 (149)
440 3exa_A TRNA delta(2)-isopenten 96.1 0.0053 1.8E-07 53.0 4.6 33 32-67 3-35 (322)
441 2orw_A Thymidine kinase; TMTK, 96.1 0.0044 1.5E-07 49.2 3.9 35 33-67 4-40 (184)
442 1n0w_A DNA repair protein RAD5 96.1 0.0063 2.1E-07 49.6 4.9 35 34-68 26-68 (243)
443 2p5t_B PEZT; postsegregational 96.1 0.0028 9.7E-08 52.7 2.8 25 31-55 31-55 (253)
444 2vp4_A Deoxynucleoside kinase; 96.1 0.0034 1.2E-07 51.4 3.2 26 30-55 18-43 (230)
445 1a7j_A Phosphoribulokinase; tr 96.0 0.0015 5.2E-08 55.8 1.1 36 32-67 5-42 (290)
446 2grj_A Dephospho-COA kinase; T 96.0 0.004 1.4E-07 49.8 3.5 25 30-54 10-34 (192)
447 3h2y_A GTPase family protein; 96.0 0.0072 2.5E-07 53.3 5.4 80 152-241 69-154 (368)
448 4b4t_J 26S protease regulatory 96.0 0.01 3.5E-07 52.9 6.3 22 34-55 184-205 (405)
449 2dhr_A FTSH; AAA+ protein, hex 96.0 0.0075 2.6E-07 55.4 5.6 42 14-55 43-87 (499)
450 2f6r_A COA synthase, bifunctio 96.0 0.0038 1.3E-07 52.9 3.4 24 31-54 74-97 (281)
451 2xb4_A Adenylate kinase; ATP-b 96.0 0.0039 1.3E-07 50.8 3.2 21 34-54 2-22 (223)
452 3d3q_A TRNA delta(2)-isopenten 96.0 0.0048 1.6E-07 53.9 3.9 32 33-67 8-39 (340)
453 3sr0_A Adenylate kinase; phosp 96.0 0.0038 1.3E-07 50.6 3.0 21 34-54 2-22 (206)
454 1m7g_A Adenylylsulfate kinase; 96.0 0.0041 1.4E-07 50.1 3.2 24 31-54 24-47 (211)
455 1e4v_A Adenylate kinase; trans 96.0 0.0043 1.5E-07 50.1 3.3 21 34-54 2-22 (214)
456 2w58_A DNAI, primosome compone 95.9 0.0061 2.1E-07 48.5 4.1 33 33-65 55-89 (202)
457 4edh_A DTMP kinase, thymidylat 95.9 0.0073 2.5E-07 49.1 4.6 38 32-70 6-45 (213)
458 3zvl_A Bifunctional polynucleo 95.9 0.005 1.7E-07 55.3 3.9 26 29-54 255-280 (416)
459 3b9p_A CG5977-PA, isoform A; A 95.9 0.017 5.9E-07 48.7 7.1 23 33-55 55-77 (297)
460 1t9h_A YLOQ, probable GTPase E 95.9 0.0037 1.3E-07 53.8 2.7 88 149-240 83-170 (307)
461 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.019 6.4E-07 47.4 7.0 23 33-55 40-62 (262)
462 1tf7_A KAIC; homohexamer, hexa 95.9 0.0026 8.8E-08 58.8 1.8 45 8-52 9-59 (525)
463 3bos_A Putative DNA replicatio 95.8 0.0055 1.9E-07 49.6 3.6 35 32-66 52-88 (242)
464 3a8t_A Adenylate isopentenyltr 95.8 0.009 3.1E-07 52.1 5.1 32 33-67 41-72 (339)
465 1ltq_A Polynucleotide kinase; 95.8 0.0051 1.7E-07 52.2 3.4 22 33-54 3-24 (301)
466 3lv8_A DTMP kinase, thymidylat 95.8 0.0059 2E-07 50.6 3.5 39 32-70 27-67 (236)
467 3ez9_A Para; DNA binding, wing 95.8 0.012 4.2E-07 52.2 5.9 40 31-70 110-158 (403)
468 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.0049 1.7E-07 54.3 3.2 23 31-53 22-44 (365)
469 1ixz_A ATP-dependent metallopr 95.8 0.0048 1.6E-07 51.1 2.9 41 14-55 28-72 (254)
470 1in4_A RUVB, holliday junction 95.8 0.0038 1.3E-07 54.2 2.4 23 33-55 52-74 (334)
471 1ak2_A Adenylate kinase isoenz 95.8 0.0055 1.9E-07 50.2 3.2 23 32-54 16-38 (233)
472 3foz_A TRNA delta(2)-isopenten 95.7 0.0083 2.9E-07 51.7 4.4 33 32-67 10-42 (316)
473 4b4t_K 26S protease regulatory 95.7 0.016 5.4E-07 52.2 6.4 21 35-55 209-229 (428)
474 4b4t_L 26S protease subunit RP 95.7 0.016 5.5E-07 52.3 6.4 22 34-55 217-238 (437)
475 4eaq_A DTMP kinase, thymidylat 95.7 0.0065 2.2E-07 49.9 3.6 38 31-69 25-63 (229)
476 1jbk_A CLPB protein; beta barr 95.7 0.0055 1.9E-07 47.5 2.9 24 32-55 43-66 (195)
477 3ld9_A DTMP kinase, thymidylat 95.7 0.0044 1.5E-07 50.9 2.4 43 28-70 17-62 (223)
478 4b4t_M 26S protease regulatory 95.7 0.013 4.6E-07 52.8 5.7 22 34-55 217-238 (434)
479 2o8b_B DNA mismatch repair pro 95.7 0.007 2.4E-07 60.3 4.2 42 11-52 750-809 (1022)
480 3r20_A Cytidylate kinase; stru 95.6 0.0063 2.1E-07 50.3 3.2 22 33-54 10-31 (233)
481 2npi_A Protein CLP1; CLP1-PCF1 95.6 0.0049 1.7E-07 56.1 2.7 44 11-55 118-161 (460)
482 4ehx_A Tetraacyldisaccharide 4 95.6 0.17 5.8E-06 43.6 12.3 150 29-200 33-192 (315)
483 3ec1_A YQEH GTPase; atnos1, at 95.6 0.011 3.8E-07 52.1 4.9 79 152-241 71-156 (369)
484 1e69_A Chromosome segregation 95.6 0.0057 2E-07 52.8 3.0 40 12-53 6-45 (322)
485 1lw7_A Transcriptional regulat 95.6 0.0056 1.9E-07 53.8 2.9 23 33-55 171-193 (365)
486 4b4t_I 26S protease regulatory 95.6 0.019 6.5E-07 51.6 6.2 22 34-55 218-239 (437)
487 1nlf_A Regulatory protein REPA 95.6 0.0073 2.5E-07 50.9 3.3 35 34-68 32-78 (279)
488 2qmh_A HPR kinase/phosphorylas 95.6 0.013 4.5E-07 47.2 4.6 31 33-67 35-65 (205)
489 3crm_A TRNA delta(2)-isopenten 95.6 0.0088 3E-07 51.8 3.9 32 33-67 6-37 (323)
490 3io5_A Recombination and repai 95.5 0.024 8.2E-07 49.0 6.3 36 34-69 30-69 (333)
491 3bh0_A DNAB-like replicative h 95.5 0.014 4.6E-07 50.3 4.8 36 34-69 70-107 (315)
492 3qks_A DNA double-strand break 95.5 0.0077 2.6E-07 48.5 3.0 24 30-53 21-44 (203)
493 1tue_A Replication protein E1; 95.5 0.0056 1.9E-07 49.6 2.1 22 34-55 60-81 (212)
494 4tmk_A Protein (thymidylate ki 95.4 0.0099 3.4E-07 48.3 3.6 38 33-70 4-43 (213)
495 3pfi_A Holliday junction ATP-d 95.4 0.037 1.3E-06 47.5 7.4 23 33-55 56-78 (338)
496 1qhl_A Protein (cell division 95.4 0.00064 2.2E-08 56.1 -3.7 42 10-54 8-49 (227)
497 4b3f_X DNA-binding protein smu 95.4 0.0091 3.1E-07 56.6 3.7 35 32-66 205-241 (646)
498 1njg_A DNA polymerase III subu 95.4 0.0084 2.9E-07 48.1 2.9 22 33-54 46-67 (250)
499 1lv7_A FTSH; alpha/beta domain 95.3 0.0084 2.9E-07 49.7 2.9 22 34-55 47-68 (257)
500 3euj_A Chromosome partition pr 95.3 0.0086 2.9E-07 54.8 3.2 22 33-54 30-51 (483)
No 1
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.94 E-value=2.2e-25 Score=195.75 Aligned_cols=199 Identities=35% Similarity=0.617 Sum_probs=158.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.++|+++|+||+|||||||+|.|+...++++++++.+++|. +.+|...+... .....++.+||+||+.+.++..
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~-i~idg~~l~~~-----~~~~~el~~gCicc~~~~~~~~ 75 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDR-----ATQIKTLTNGCICCSRSNELED 75 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCS-CCEEEEEECTT-----SCEEEEETTSCEEECTTSCHHH
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcc-cCccHHHHhCC-----CCCEEEECCCceEEcccHHHHH
Confidence 36899999999999999999999987778999999999998 88887666431 1256788999999999999999
Q ss_pred HHHHHH--HhcC--CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 110 ALEQLV--QRKE--RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 110 ~l~~~~--~~~~--~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
.+..++ .+.. .++++++|+.|+.+|..+...+...........++.++.++|+..+...... +.....|+
T Consensus 76 ~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~------ls~g~~Q~ 149 (318)
T 1nij_A 76 ALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQV 149 (318)
T ss_dssp HHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHH------CHHHHHHH
T ss_pred HHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhh------chHHHHHH
Confidence 888875 1233 3599999999999988765443112233445678899999999987765442 24456889
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~~ 246 (257)
..++++++||.|++++. +.+.+.++.+++.+.++.++.+..+++.+++...+..+
T Consensus 150 ~~ad~ill~k~dl~de~------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~~~~~~~~ 204 (318)
T 1nij_A 150 GYADRILLTKTDVAGEA------EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLE 204 (318)
T ss_dssp HTCSEEEEECTTTCSCT------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCTTSCC
T ss_pred HhCCEEEEECcccCCHH------HHHHHHHHHhCCCCeEEEecccCCCHHHHhCCCCCChh
Confidence 99999999999999542 66777888889999999999999999999988766543
No 2
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.75 E-value=5.3e-18 Score=150.78 Aligned_cols=187 Identities=20% Similarity=0.181 Sum_probs=118.1
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhh------hc--CCCCceeeeeeecCCCce
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMI------NE--GEGGALVEEWVELANGCI 99 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~------~~--~~~~~~~~~~~~l~~gci 99 (257)
.+.++++|+|++|+|||||+++|... ..|++++++..|++... .....+ .. ...+. ......++|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~-~~g~~l~d~~~~~~~~~~~~~---~i~~~~~~~~ 152 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR-TGGSILGDKTRMARLAVHPNA---YIRPSPTSGT 152 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------CHHHHTCTTE---EEECCC--CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc-ccchhccchhhHHhhccCCCe---eEEECCCCcc
Confidence 35679999999999999999999764 56899999999988632 111111 00 01112 3345677888
Q ss_pred eeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh
Q 025133 100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (257)
Q Consensus 100 cc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (257)
||.........+. .+. ..+++++||||||+....... ...+|.+++|+|+...... .. +.
T Consensus 153 ~~~~~~~t~d~i~-~~~-~~~~~~iiiDTpGi~~~~~~~-----------~~~aD~vl~V~d~~~~~~~-~~------l~ 212 (355)
T 3p32_A 153 LGGVTRATRETVV-LLE-AAGFDVILIETVGVGQSEVAV-----------ANMVDTFVLLTLARTGDQL-QG------IK 212 (355)
T ss_dssp HHHHHHHHHHHHH-HHH-HTTCCEEEEEECSCSSHHHHH-----------HTTCSEEEEEEESSTTCTT-TT------CC
T ss_pred ccchhHHHHHHHH-HHh-hCCCCEEEEeCCCCCcHHHHH-----------HHhCCEEEEEECCCCCccH-HH------HH
Confidence 8776666666663 332 567999999999987654322 1347899999998754322 11 00
Q ss_pred HHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCC-----CCEEE-EeecCCcChhhhhcCcc
Q 025133 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS-----LAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 180 ~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~-----~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
....+.|+++|+||+|+.+........+.+...+...++ ..+++ +|++++.|++++++.+.
T Consensus 213 --~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~ 279 (355)
T 3p32_A 213 --KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVE 279 (355)
T ss_dssp --TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHH
T ss_pred --HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHH
Confidence 012456999999999998654322233455555544432 34555 89999999999987763
No 3
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.75 E-value=7.4e-18 Score=139.25 Aligned_cols=179 Identities=17% Similarity=0.274 Sum_probs=122.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.+.++++++|++|+|||||+++|+.. ....+++++.++++. ..|...+... +. ....+..||+||.....+.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 100 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KADYERVRRF--GI---KAEAISTGKECHLDAHMIY 100 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHHHHHHHTT--TC---EEEECCCTTCSSCCHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chhHHHHHhC--CC---cEEEecCCceeecccHHHH
Confidence 46789999999999999999999864 334689999999985 3444433321 11 3456778888875544444
Q ss_pred HHHHHHHHhcCCCCEEEEecCCC-CCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 109 QALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+. ...+++++++||+|. ..|..+ . ...+.+++|+|+..+..... ....+...
T Consensus 101 ~~~~----~~~~~d~iiidt~G~~~~~~~~------~------~~~~~~i~vvd~~~~~~~~~---------~~~~~~~~ 155 (221)
T 2wsm_A 101 HRLK----KFSDCDLLLIENVGNLICPVDF------D------LGENYRVVMVSVTEGDDVVE---------KHPEIFRV 155 (221)
T ss_dssp TTGG----GGTTCSEEEEEEEEBSSGGGGC------C------CSCSEEEEEEEGGGCTTHHH---------HCHHHHHT
T ss_pred HHHH----hcCCCCEEEEeCCCCCCCCchh------c------cccCcEEEEEeCCCcchhhh---------hhhhhhhc
Confidence 3333 245789999999995 333211 0 12356899999987532211 12245678
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|+||+|+.+..+ ...+.+...++..++.++++ +|++++.++++++..+.
T Consensus 156 ~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~ 209 (221)
T 2wsm_A 156 ADLIVINKVALAEAVG--ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLR 209 (221)
T ss_dssp CSEEEEECGGGHHHHT--CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred CCEEEEecccCCcchh--hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence 9999999999975421 12577777788888877877 78999999999887663
No 4
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=148.26 Aligned_cols=188 Identities=18% Similarity=0.119 Sum_probs=102.7
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc------CCCCceeeeeeecCCCceee
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE------GEGGALVEEWVELANGCICC 101 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~------~~~~~~~~~~~~l~~gcicc 101 (257)
...++++|+|+||||||||+|+|+.. ..+.+++++..++++ ...++.++.. -... ........+.+|.||
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~-~~~~g~~l~d~~rm~~~~~~-~~~~v~~~~~~~~lg 149 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS-CTSGGSLLGDKTRMTELSRD-MNAYIRPSPTRGTLG 149 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------CCSTTC-TTEEEECC-------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC-CCcCcchhchHHHHHHhcCC-CCEEEEecCCccccc
Confidence 45789999999999999999999864 346899999999986 3332222211 0000 001223456688887
Q ss_pred ccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHH
Q 025133 102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (257)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (257)
.+..+....+..+ ...+++++|+||||+..+.... ...+|.+++|+|+...... .. +.
T Consensus 150 g~tr~~~~~~~~~--~~~~~~~iliDT~Gi~~~~~~l-----------~~~~d~vl~V~d~~~~~~~-~~------i~-- 207 (349)
T 2www_A 150 GVTRTTNEAILLC--EGAGYDIILIETVGVGQSEFAV-----------ADMVDMFVLLLPPAGGDEL-QG------IK-- 207 (349)
T ss_dssp --CTTHHHHHHHH--HHTTCSEEEEECCCC--CHHHH-----------HTTCSEEEEEECCC------------------
T ss_pred cchHHHHHHHHhh--ccCCCCEEEEECCCcchhhhhH-----------HhhCCEEEEEEcCCcchhH-HH------hH--
Confidence 5444454444322 1467899999999987553221 1246899999999864321 10 00
Q ss_pred HHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCC-----CCEEE-EeecCCcChhhhhcCc
Q 025133 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS-----LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 182 ~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~-----~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...++.++++|+||+|+.+..........+...++..++ ..+++ +|+.++.|+++|++.+
T Consensus 208 ~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I 273 (349)
T 2www_A 208 RGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKM 273 (349)
T ss_dssp ---CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHH
Confidence 012456899999999997542211123334443433333 34555 7999999999988766
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.71 E-value=4.1e-18 Score=148.70 Aligned_cols=167 Identities=23% Similarity=0.288 Sum_probs=104.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+.+.++++|.+|+|||||+|+|+ +.++++++..++++..... ....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~----g~~~~i~s~~~~tT~~~~~-------------~~~~---------------- 54 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLL----GTKVSIISPKAGTTRMRVL-------------GVKN---------------- 54 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEE-------------EEEE----------------
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh----CCCccccCCCCCceeeEEE-------------EEEe----------------
Confidence 456689999999999999999999 5566666777765221100 0000
Q ss_pred HHHHHHHhcC-CCCEEEEecCCCCCcH--HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 110 ALEQLVQRKE-RLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 110 ~l~~~~~~~~-~~~~ilIDt~G~~~~~--~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
.. +.+++|+||||+.++. ......+..........+|.+++|+|+.......+... +...+.+..
T Consensus 55 --------~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~----~~~~l~~~~ 122 (308)
T 3iev_A 55 --------IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEI----YQNFIKPLN 122 (308)
T ss_dssp --------ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHH----HHHHTGGGC
T ss_pred --------cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHH----HHHHHHhcC
Confidence 22 5678999999987754 21111111112223456899999999986533222110 122333345
Q ss_pred hcCEEEEeCCCCC-CcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 187 FADVVILNKVDLV-SPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 187 ~~~vivlNK~D~~-~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
.|.++|+||+|+. +.+. +......+.+.. +..+++ +|++++.|+++++..+...+
T Consensus 123 ~pvilV~NK~Dl~~~~~~----~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 123 KPVIVVINKIDKIGPAKN----VLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp CCEEEEEECGGGSSSGGG----GHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCEEEEEECccCCCCHHH----HHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 6889999999998 4433 344444454444 556666 79999999999888764433
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.71 E-value=7.8e-18 Score=146.48 Aligned_cols=163 Identities=21% Similarity=0.214 Sum_probs=102.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+.+.++++|.+|+|||||+|+|+ +.++++++..++++.. .+ .....
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~----g~~~~ivs~~~~tTr~----~i---------~~i~~---------------- 51 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLL----GVKVAPISPRPQTTRK----RL---------RGILT---------------- 51 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCS----CE---------EEEEE----------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHh----CCceeeecCCCCceeE----EE---------EEEEE----------------
Confidence 566789999999999999999999 5555566666664211 00 00000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hh
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AF 187 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~ 187 (257)
..+.+++|+||||+.++.......+..........+|.+++|+|+.......+.. +...+.+. ..
T Consensus 52 --------~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~-----i~~~l~~~~~~~ 118 (301)
T 1wf3_A 52 --------EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDEL-----VARALKPLVGKV 118 (301)
T ss_dssp --------ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHH-----HHHHHGGGTTTS
T ss_pred --------eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHH-----HHHHHHhhcCCC
Confidence 2346789999999987644332221122223345789999999998643322211 12233333 56
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
|.++|+||+|+.+..+ .+...++.+.+..+++ +|+.++.+++++++.+...
T Consensus 119 p~ilV~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 119 PILLVGNKLDAAKYPE------EAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 170 (301)
T ss_dssp CEEEEEECGGGCSSHH------HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred CEEEEEECcccCCchH------HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 7899999999986532 0233344445556666 7888888998888776443
No 7
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.70 E-value=6e-17 Score=143.23 Aligned_cols=188 Identities=17% Similarity=0.150 Sum_probs=110.7
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchh-
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS- 106 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~- 106 (257)
.+.++++++|++|+|||||++.|+.. ..+.+++++..++++ ...+...+... ...+......++|+||.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~-~~~~~~il~d~---~~~~~~~~~~~~~i~~~~~~~~ 129 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS-PVTGGSILGDK---TRMNDLARAEAAFIRPVPSSGH 129 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-------------------CTTTTCTTEEEEEECC---
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc-CCCCcceeccc---chHHhhccCCCceeecCccccc
Confidence 45678999999999999999999753 347899999999986 22222222110 001111223577888754221
Q ss_pred ----HHHHHHHHHH-hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHH
Q 025133 107 ----LVQALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (257)
Q Consensus 107 ----~~~~l~~~~~-~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (257)
....+..+.. ...+++++||||||+.++..... ..+|.+++|+|+..... .. . +..
T Consensus 130 l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~-----------~~aD~vl~Vvd~~~~~~-~~----~--l~~- 190 (341)
T 2p67_A 130 LGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVA-----------RMVDCFISLQIAGGGDD-LQ----G--IKK- 190 (341)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHH-----------TTCSEEEEEECC-------C----C--CCH-
T ss_pred cchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHHHH-----------HhCCEEEEEEeCCccHH-HH----H--HHH-
Confidence 1112222211 14578999999999987654321 34789999999975432 11 1 111
Q ss_pred HHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCC-----CCEEE-EeecCCcChhhhhcCc
Q 025133 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS-----LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 182 ~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~-----~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.+.|.++|+||+|+.+.......++.+...++..++ ..+++ +|++++.|++++++.+
T Consensus 191 -~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l 255 (341)
T 2p67_A 191 -GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAI 255 (341)
T ss_dssp -HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHH
T ss_pred -hhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHH
Confidence 33567999999999998653221222344444444443 34555 7899999999988766
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.69 E-value=1.7e-17 Score=137.09 Aligned_cols=174 Identities=19% Similarity=0.178 Sum_probs=104.9
Q ss_pred ccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccc
Q 025133 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK 104 (257)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~ 104 (257)
......+.+.++++|.+|+|||||+|+|+... .++.+...+|.+.... ...+.
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~---~~~~~~~~~~~t~~~~---------------~~~~~--------- 74 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQK---RLAFASKTPGRTQHIN---------------YFSVG--------- 74 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCS---SSSCTTCCCCSCCCEE---------------EEEES---------
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---cceeecCCCCcccceE---------------EEEec---------
Confidence 34455567889999999999999999998531 1222333333211100 00000
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCc------HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 105 HSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~------~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
...+..+.|+||||+..+ ......+ ....+.....++.+++|+|+.......+.. +
T Consensus 75 ------------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~ 136 (223)
T 4dhe_A 75 ------------PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL-LSSYLQTRPQLCGMILMMDARRPLTELDRR-----M 136 (223)
T ss_dssp ------------CTTSCSEEEEECCCCCSSCCCSTHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----H
T ss_pred ------------CCCCCcEEEEcCCCCCcccCChhhHHHHHHH-HHHHHhcCcCcCEEEEEEeCCCCCCHHHHH-----H
Confidence 022467899999997654 1111111 112233344578899999998643322211 2
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh-----CCCCEEE-EeecCCcChhhhhcCccC
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI-----NSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~-----~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
...+.+...+.++|+||+|+.+..+.....+.+.+.+... ....+++ +|++++.|+++++..+..
T Consensus 137 ~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 207 (223)
T 4dhe_A 137 IEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIES 207 (223)
T ss_dssp HHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence 2333444568899999999998654333455555666654 3555666 899999999999887743
No 9
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.67 E-value=1.8e-16 Score=137.81 Aligned_cols=167 Identities=18% Similarity=0.177 Sum_probs=103.8
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+.+.++|+|.+|+|||||+|+|+ +.++++++..++++. .... ....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~----g~~~~i~s~~~~tTr----~~~~---------gi~~--------------- 52 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLL----GQKISITSRKAQTTR----HRIV---------GIHT--------------- 52 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHH----TCSEEECCCCSSCCS----SCEE---------EEEE---------------
T ss_pred cccCCEEEEECCCCCCHHHHHHHHH----CCCccccCCCCCcce----eeEE---------EEEE---------------
Confidence 3567789999999999999999999 667777666666421 1000 0000
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+.++.|+||||+. .+.......+..........+|.+++|+|+.. ....+.. +...+.+...
T Consensus 53 ---------~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~-----i~~~l~~~~~ 117 (301)
T 1ega_A 53 ---------EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEM-----VLNKLREGKA 117 (301)
T ss_dssp ---------ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHH-----HHHHHHSSSS
T ss_pred ---------ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHH-----HHHHHHhcCC
Confidence 234568899999987 44433322222333445667899999999976 3322211 2222233357
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
|.++++||+|+.+.. ..+......+.+..+...++ +|++.+.+++++++.+....
T Consensus 118 P~ilvlNK~D~~~~~---~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 118 PVILAVNKVDNVQEK---ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CEEEEEESTTTCCCH---HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred CEEEEEECcccCccH---HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 889999999998721 11223333343333444444 78999999998888775443
No 10
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.65 E-value=2.2e-16 Score=127.08 Aligned_cols=166 Identities=19% Similarity=0.235 Sum_probs=98.9
Q ss_pred ccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccc
Q 025133 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK 104 (257)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~ 104 (257)
...+....+-++++|.+|+|||||+|+|+.. +.......+|.+.... ..
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~t~~~~---------------~~------------ 64 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNR----KIAFVSKTPGKTRSIN---------------FY------------ 64 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS----CCSCCCSSCCCCCCEE---------------EE------------
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcC----ccccccCCCCCccCeE---------------EE------------
Confidence 3445556778999999999999999999953 2122222222200000 00
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCc------HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 105 HSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~------~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
..+..+.++||||+... ......+ ....+.....++.+++|+|+.......... +
T Consensus 65 -------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-----~ 125 (195)
T 3pqc_A 65 -------------LVNSKYYFVDLPGYGYAKVSKKERMLWKRL-VEDYFKNRWSLQMVFLLVDGRIPPQDSDLM-----M 125 (195)
T ss_dssp -------------EETTTEEEEECCCBSSSCCCHHHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----H
T ss_pred -------------EECCcEEEEECCCCccccCChhhHHHHHHH-HHHHHhcCcCceEEEEEecCCCCCCHHHHH-----H
Confidence 12345889999996532 1111111 122233345678999999987543222111 2
Q ss_pred hHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...+.....|.++|+||+|+.+.++.....+.+...+...+. .+++ .|++++.|+++++..+
T Consensus 126 ~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l 188 (195)
T 3pqc_A 126 VEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE-YTIIPTSSVTGEGISELLDLI 188 (195)
T ss_dssp HHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC-SCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC-CceEEEecCCCCCHHHHHHHH
Confidence 234445567899999999999776543344455555544333 3444 7999999999988765
No 11
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.63 E-value=2.2e-16 Score=133.81 Aligned_cols=209 Identities=18% Similarity=0.119 Sum_probs=111.8
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeee---eecCCCceeecc--
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW---VELANGCICCTV-- 103 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~---~~l~~gcicc~~-- 103 (257)
.+.++++++|++|+||||++++|+.. ..+++++++..|++... .+...-.........+.. ....+||+||..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKE-LPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSC-CSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccc-cCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 45689999999999999999999742 26889999999998421 100000000000000000 112356666642
Q ss_pred chhHHHHHHHHHHh-cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 104 KHSLVQALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 104 ~~~~~~~l~~~~~~-~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
.......+.+.+.. ..+++++||||||..++....... ......... +.+++++|+.......+............
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~--~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFG--VRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHH--HHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhH--HHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 11112222222221 235899999999987553321100 000011234 78999999876544333211000001122
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCc---c---hHHHHHHH------------------HHHhCCCCEEE-EeecCCcChhhh
Q 025133 183 HQIAFADVVILNKVDLVSPERSG---D---SLDELEKE------------------IHEINSLAHVI-RSVRCQVDLSEV 237 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~---~---~l~~~~~~------------------l~~~~~~a~i~-~s~~~~~~~~~l 237 (257)
.+...|.++|+||+|+.+..+.. + ..+.+... ++..++..+++ +|++++.+++++
T Consensus 168 ~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l 247 (262)
T 1yrb_A 168 LRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL 247 (262)
T ss_dssp HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred cccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence 44567899999999998753210 0 01111111 23445553444 899999999999
Q ss_pred hcCcc
Q 025133 238 LNCRA 242 (257)
Q Consensus 238 ~~~~~ 242 (257)
+..+.
T Consensus 248 ~~~i~ 252 (262)
T 1yrb_A 248 ETLAY 252 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 12
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.62 E-value=1.6e-15 Score=122.31 Aligned_cols=168 Identities=13% Similarity=0.171 Sum_probs=94.5
Q ss_pred cccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeecc
Q 025133 24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV 103 (257)
Q Consensus 24 ~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~ 103 (257)
....+..+.+.++++|.+|+|||||+|+|+... ........+|.+.... ..
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~t~~~~---------------~~----------- 65 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRK---NLARTSSKPGKTQTLN---------------FY----------- 65 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC----------------CCEE---------------EE-----------
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCC---CccccCCCCCceeeEE---------------EE-----------
Confidence 334555677889999999999999999999521 1233333333211100 00
Q ss_pred chhHHHHHHHHHHhcCCCCEEEEecCCCCCc------HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCC
Q 025133 104 KHSLVQALEQLVQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177 (257)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~------~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~ 177 (257)
..+..+.++||||+..+ ......+ ....+.....++.+++|+|+.......+..
T Consensus 66 --------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~----- 125 (195)
T 1svi_A 66 --------------IINDELHFVDVPGYGFAKVSKSEREAWGRM-IETYITTREELKAVVQIVDLRHAPSNDDVQ----- 125 (195)
T ss_dssp --------------EETTTEEEEECCCBCCCSSCHHHHHHHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----
T ss_pred --------------EECCcEEEEECCCCCccccCHHHHHHHHHH-HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-----
Confidence 01235889999997653 1111111 112223334568999999998643322210
Q ss_pred hhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 178 ~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+...+.+...|.++|+||+|+.+..+.....+++.+.+.. .+..+++ .|++++.|+++++..+
T Consensus 126 ~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 189 (195)
T 1svi_A 126 MYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI-DPEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp HHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC-CTTSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcc-cCCCceEEEEccCCCCHHHHHHHH
Confidence 1223344556889999999999875432222333333321 3345666 7899999999988754
No 13
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.61 E-value=9e-16 Score=127.08 Aligned_cols=180 Identities=24% Similarity=0.346 Sum_probs=118.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.+.+.++|+|++|+|||||+++|+.. ....+++++.++++. ..|...+... +. ....+.+||.||....++.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~--~~---~~~~~~~~~~~~l~~~~~~ 108 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA--KFDAERMEKH--GA---KVVPLNTGKECHLDAHLVG 108 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT--HHHHHHHHTT--TC---EEEEEECTTCSSCCHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC--CccHHHHHhc--CC---cEEEecCCceEeccHHHHH
Confidence 35788999999999999999999874 334688999999874 3444444331 11 3345667888776555554
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 109 QALEQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+..+. ..+++++++|++|.. .+.. + . ...+..+.|+|+........ .+ ..++..
T Consensus 109 ~~~~~l~--~~~~d~~~id~~g~i~~~~s----~------~--~~~~~~~~v~~~~~~~~~~~------~~---~~~~~~ 165 (226)
T 2hf9_A 109 HALEDLN--LDEIDLLFIENVGNLICPAD----F------D--LGTHKRIVVISTTEGDDTIE------KH---PGIMKT 165 (226)
T ss_dssp HHHTTSC--GGGCSEEEEECCSCSSGGGG----C------C--CSCSEEEEEEEGGGCTTTTT------TC---HHHHTT
T ss_pred HHHHHHh--cCCCCEEEEeCCCCccCcch----h------h--hccCcEEEEEecCcchhhHh------hh---hhHhhc
Confidence 4433221 346799999999943 2211 1 1 01234567888654322111 12 234678
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+++|+||+|+.+..+ ...+.+...++..++.++++ .|++++.++++++..+
T Consensus 166 ~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 218 (226)
T 2hf9_A 166 ADLIVINKIDLADAVG--ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFI 218 (226)
T ss_dssp CSEEEEECGGGHHHHT--CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred CCEEEEeccccCchhH--HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHH
Confidence 9999999999976421 12567777788777777877 6889999999988754
No 14
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.58 E-value=1.1e-15 Score=129.86 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=97.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+|.++++|.+|+|||||+|+|+. .+ ..+.+.+|.+...... ...
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g----~~-~~v~~~pg~Tv~~~~~-------------~~~------------------ 44 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTN----AN-QRVGNWPGVTVEKKTG-------------EFL------------------ 44 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHT----TS-EEEEECTTSSSEEEEE-------------EEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHC----CC-CCccCCCCceEEEEEE-------------EEE------------------
Confidence 46799999999999999999994 33 3455666642211100 011
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH------HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP------LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~------~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
..+..+.|+||||...... ..+.+. ...+ ....+|.+++|+|++....... +...+..+
T Consensus 45 ------~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~-~~~~-~~~~~d~vi~VvDas~~~~~~~-------l~~~l~~~ 109 (256)
T 3iby_A 45 ------LGEHLIEITDLPGVYSLVANAEGISQDEQIA-AQSV-IDLEYDCIINVIDACHLERHLY-------LTSQLFEL 109 (256)
T ss_dssp ------ETTEEEEEEECCCCSSCC------CHHHHHH-HHHH-HHSCCSEEEEEEEGGGHHHHHH-------HHHHHTTS
T ss_pred ------ECCeEEEEEeCCCcccccccccCCCHHHHHH-HHHH-hhCCCCEEEEEeeCCCchhHHH-------HHHHHHHc
Confidence 1234678999999765432 111111 1111 1246899999999998533221 12233344
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
..|.++|+||+|+..........+.+...+ . .+++ +|++++.|+++++..+...
T Consensus 110 ~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l----g-~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 110 GKPVVVALNMMDIAEHRGISIDTEKLESLL----G-CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CSCEEEEEECHHHHHHTTCEECHHHHHHHH----C-SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCCEEEEEEChhcCCcCCcHHHHHHHHHHc----C-CCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999987655444445544433 2 3454 8999999999998877443
No 15
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.57 E-value=1.7e-14 Score=127.34 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=118.2
Q ss_pred EEEccccccccCcccCC-----CcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccccc------chhh
Q 025133 12 VRIDETTHEFSNSHEND-----DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV------ERAM 78 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-----~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~------d~~~ 78 (257)
++++++.+.|+....+. -.+..+++|+|++|||||||+|.|+.. ..+.+++++..++++ ... .+..
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~-~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS-TRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG-GSSCCCSSCCGGG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc-cccccchHHHhhh
Confidence 45677777776543322 224568999999999999999999853 236789999988764 211 1111
Q ss_pred hhcCCCCceeeeeeecCCCceeeccchhHHHHHHHHH-HhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEE
Q 025133 79 INEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV-QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSII 157 (257)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~~~-~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi 157 (257)
+.. +.-....-+...+.||++.+......+.+. ....+++++||||||+.++..... ..+|.++
T Consensus 109 i~~----v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~-----------~~~d~vl 173 (337)
T 2qm8_A 109 MAR----LAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA-----------DLTDFFL 173 (337)
T ss_dssp STT----GGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH-----------TTSSEEE
T ss_pred hee----eccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHH-----------hhCCEEE
Confidence 110 000000011112235665554444444331 124689999999999987743321 2468899
Q ss_pred EEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCC-cchHHHHHHHHHHhCC-----CCEEE-EeecC
Q 025133 158 TVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERS-GDSLDELEKEIHEINS-----LAHVI-RSVRC 230 (257)
Q Consensus 158 ~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~-~~~l~~~~~~l~~~~~-----~a~i~-~s~~~ 230 (257)
+|+|+..... .... .. ...+.++++++||+|+....+. ....+.+...+...+| ..+++ +|+..
T Consensus 174 ~v~d~~~~~~-~~~i------~~--~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~ 244 (337)
T 2qm8_A 174 VLMLPGAGDE-LQGI------KK--GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLH 244 (337)
T ss_dssp EEECSCC-------C------CT--THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTT
T ss_pred EEEcCCCccc-HHHH------HH--HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCC
Confidence 9999864422 1100 00 1235689999999998653211 0112333333333342 34554 89999
Q ss_pred CcChhhhhcCcc
Q 025133 231 QVDLSEVLNCRA 242 (257)
Q Consensus 231 ~~~~~~l~~~~~ 242 (257)
+.++++|++.+.
T Consensus 245 g~gi~~L~~~I~ 256 (337)
T 2qm8_A 245 GKGLDSLWSRIE 256 (337)
T ss_dssp TBSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999887663
No 16
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.54 E-value=4.5e-15 Score=127.27 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=99.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|.+|+|||||+|+|+. .+ ..+.+.+|.+..... ....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g----~~-~~v~~~~g~t~~~~~-------------~~~~------------------ 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTG----SR-QRVGNWAGVTVERKE-------------GQFS------------------ 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT----TC-EEEEECTTSSSEEEE-------------EEEE------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhC----CC-cccCCCCCeeEEEEE-------------EEEE------------------
Confidence 35689999999999999999994 33 456667774221110 0111
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH------HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP------LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~------~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
..+..+.|+||||...... ..+.+. ..+......|.+++|+|+.+...... +...+...
T Consensus 47 ------~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~--~~~~~~~~~d~ii~VvD~~~~~~~~~-------~~~~l~~~ 111 (274)
T 3i8s_A 47 ------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA--CHYILSGDADLLINVVDASNLERNLY-------LTLQLLEL 111 (274)
T ss_dssp ------CSSCEEEEEECCCCSCSCC----CCHHHHHH--HHHHHHTCCSEEEEEEEGGGHHHHHH-------HHHHHHHH
T ss_pred ------eCCCceEEEECcCCCccccccccCCHHHHHH--HHHHhhcCCCEEEEEecCCChHHHHH-------HHHHHHhc
Confidence 1235678999999765431 111110 11111246899999999998543322 22334556
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~ 245 (257)
..|.++|+||+|+.+........+.+.+.+ ....+.+|++++.|+++++..+....
T Consensus 112 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l----g~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 112 GIPCIVALNMLDIAEKQNIRIEIDALSARL----GCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp TCCEEEEEECHHHHHHTTEEECHHHHHHHH----TSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEECccchhhhhHHHHHHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 789999999999986554333344444433 22234489999999999988775443
No 17
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.50 E-value=9.8e-15 Score=134.26 Aligned_cols=158 Identities=19% Similarity=0.117 Sum_probs=78.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|+|||||+|+|+ +.+.+++...+|++.+... ....
T Consensus 235 kV~ivG~~nvGKSSLln~L~----~~~~a~vs~~~gtT~d~~~-------------~~i~-------------------- 277 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLL----GQERAIVSHMPGTTRDYIE-------------ECFI-------------------- 277 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC----------------------C-------------EEEE--------------------
T ss_pred EEEEECCCCCCHHHHHHHHh----CCCCcccCCCCCceEEEEE-------------EEEE--------------------
Confidence 38999999999999999998 4445667777765221110 1111
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVI 192 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~viv 192 (257)
..+..+.|+||||+.++....+.+.+.........+|.+++|+|++........ . .....+.++ ..|.++|
T Consensus 278 ----~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~---~~~~~l~~l~~~piIvV 349 (476)
T 3gee_A 278 ----HDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDEL-T---EIRELKAAHPAAKFLTV 349 (476)
T ss_dssp ----ETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGH-H---HHHHHHHHCTTSEEEEE
T ss_pred ----ECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhh-H---HHHHHHHhcCCCCEEEE
Confidence 123458899999998766555544434445566789999999999865432100 0 011222222 4578999
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
+||+|+.+... ... ..+.+.+...-+.+|++++.|+++++..+.
T Consensus 350 ~NK~Dl~~~~~----~~~--~~l~~~~~~~~i~vSAktg~GI~eL~~~i~ 393 (476)
T 3gee_A 350 ANKLDRAANAD----ALI--RAIADGTGTEVIGISALNGDGIDTLKQHMG 393 (476)
T ss_dssp EECTTSCTTTH----HHH--HHHHHHHTSCEEECBTTTTBSHHHHHHHHT
T ss_pred EECcCCCCccc----hhH--HHHHhcCCCceEEEEECCCCCHHHHHHHHH
Confidence 99999987643 111 223332112234489999999999988774
No 18
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.50 E-value=3.7e-14 Score=132.67 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=84.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCC-----------CCeEEEEecCCCcccccchhhhhcCCCCceeee----eeec
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKH-----------GKRIAVILNEFGEEIGVERAMINEGEGGALVEE----WVEL 94 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~-----------~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~----~~~l 94 (257)
...|.++|+|++|+|||||+|+|+.... ....++..++.+. +..+..++... ...... -..+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~-i~~g~~l~~~~--~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEG-TVPGNALVVDP--EKPFRKLNPFGNTF 139 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSE-EECCC--------------------CC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCccc-ccCCceeeecC--cccHHHHhhhcccc
Confidence 4678999999999999999999996421 0113344444332 21221111110 000000 0123
Q ss_pred CCCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHH--HHHhccc-ccccccceeeeeEEEEEeccch-HHHHh
Q 025133 95 ANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAP--LASVLWL-DDQLESAVRLDSIITVVDAKNL-LFQID 170 (257)
Q Consensus 95 ~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~-~~~~~~~~~~~~vi~vvDa~~~-~~~~~ 170 (257)
.++|+||+.+.++.. +++||||||+..+.. ..+.+.. .........+|.+++|+|+... .....
T Consensus 140 ~~~~~~~~~~~~ll~------------~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~ 207 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLE------------SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF 207 (550)
T ss_dssp CTTEEEEECCCHHHH------------HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH
T ss_pred cccceEEeccccccC------------CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH
Confidence 489999999877653 267999999886322 1110000 0011123467999999999763 11111
Q ss_pred hhccCCChhHHHHHHhhcCEEEEeCCCCCCcCC
Q 025133 171 KYRHLSSYPEAIHQIAFADVVILNKVDLVSPER 203 (257)
Q Consensus 171 ~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~ 203 (257)
.. +...+.+...+.++|+||+|+++.++
T Consensus 208 ~~-----~l~~l~~~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 208 SE-----AIGALRGHEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp HH-----HHHHTTTCGGGEEEEEECGGGSCHHH
T ss_pred HH-----HHHHHHhcCCCEEEEEECCCccCHHH
Confidence 00 12223344567899999999998654
No 19
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.48 E-value=3.4e-14 Score=121.45 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=93.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|.+|+|||||+|+|+. ... .+.+.+|.+...... ...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g----~~~-~~~~~~~~t~~~~~~-------------~~~------------------ 46 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG----LRQ-HVGNWPGVTVEKKEG-------------IME------------------ 46 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT----TCE-EEEECTTSSCEEEEE-------------EEE------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhC----CCc-ccCCCCCeEEEeeEE-------------EEE------------------
Confidence 46789999999999999999994 333 445555532211100 001
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh-hc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~-~~ 188 (257)
..+..+.++||||...... ..+.+ ...+-....+|.+++|+|+......... ...+.... .|
T Consensus 47 ------~~~~~~~l~DtpG~~~~~~~~~~~~~--~~~~~~~~~~d~vi~v~D~~~~~~~~~~-------~~~~~~~~~~p 111 (271)
T 3k53_A 47 ------YREKEFLVVDLPGIYSLTAHSIDELI--ARNFILDGNADVIVDIVDSTCLMRNLFL-------TLELFEMEVKN 111 (271)
T ss_dssp ------ETTEEEEEEECCCCSCCCSSCHHHHH--HHHHHHTTCCSEEEEEEEGGGHHHHHHH-------HHHHHHTTCCS
T ss_pred ------ECCceEEEEeCCCccccccCCHHHHH--HHHhhhccCCcEEEEEecCCcchhhHHH-------HHHHHhcCCCC
Confidence 1234578999999765322 11101 0011112357999999999986433221 12223344 78
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++|+||+|+.+..........+.+.+ + .+++ +|+..+.|+++++..+.
T Consensus 112 ~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g--~~~~~~Sa~~g~gi~~l~~~i~ 161 (271)
T 3k53_A 112 IILVLNKFDLLKKKGAKIDIKKMRKEL---G--VPVIPTNAKKGEGVEELKRMIA 161 (271)
T ss_dssp EEEEEECHHHHHHHTCCCCHHHHHHHH---S--SCEEECBGGGTBTHHHHHHHHH
T ss_pred EEEEEEChhcCcccccHHHHHHHHHHc---C--CcEEEEEeCCCCCHHHHHHHHH
Confidence 899999999876544333344444433 2 3344 79999999998887763
No 20
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.48 E-value=6.5e-15 Score=134.97 Aligned_cols=166 Identities=19% Similarity=0.172 Sum_probs=84.3
Q ss_pred cccCCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeecc
Q 025133 24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV 103 (257)
Q Consensus 24 ~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~ 103 (257)
-+...+.+.|.++++|.+|+|||||+|+|+ +.+.+++...+|.+.. .... ..
T Consensus 15 ~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~----~~~~~~v~~~~g~t~~----~~~~-----------~~--------- 66 (456)
T 4dcu_A 15 VPRGSHMGKPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGVTRD----RIYS-----------SA--------- 66 (456)
T ss_dssp --------CCEEEEECSSSSSHHHHHHHHE----EEEEC---------------CEEE-----------EC---------
T ss_pred CCChhhcCCCEEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCccee----EEEE-----------EE---------
Confidence 344456678999999999999999999998 5566666666664211 1100 00
Q ss_pred chhHHHHHHHHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 104 KHSLVQALEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
...+..+.++||||+..... +.+.+. .........+|.+++|+|+.......+.. +...+
T Consensus 67 -------------~~~~~~~~liDT~G~~~~~~~~~~~~~-~~~~~~~~~ad~il~VvD~~~~~~~~d~~-----l~~~l 127 (456)
T 4dcu_A 67 -------------EWLNYDFNLIDTGGIDIGDEPFLAQIR-QQAEIAMDEADVIIFMVNGREGVTAADEE-----VAKIL 127 (456)
T ss_dssp -------------TTCSSCCEEECCCC------CCHHHHH-HHHHHHHHHCSEEEEEEESSSCSCHHHHH-----HHHHH
T ss_pred -------------EECCceEEEEECCCCCCcchHHHHHHH-HHHHhhHhhCCEEEEEEeCCCCCChHHHH-----HHHHH
Confidence 02345688999999763211 111110 11112234689999999998754443321 23334
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
.+...+.++|+||+|+....+ .... ...+.-...+.+|+..+.+++++++....
T Consensus 128 ~~~~~pvilV~NK~D~~~~~~------~~~e-~~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 128 YRTKKPVVLAVNKLDNTEMRA------NIYD-FYSLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp TTCCSCEEEEEECC---------------CC-SGGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred HHcCCCEEEEEECccchhhhh------hHHH-HHHcCCCceEEeecccccchHHHHHHHHh
Confidence 444678899999999875431 1111 11223334556899999999988877643
No 21
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.46 E-value=2.5e-14 Score=130.47 Aligned_cols=158 Identities=19% Similarity=0.242 Sum_probs=86.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+|.++++|.+|+|||||+|+|+ +.+.+++...+|.+. |. .. ....
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~----~~~~~~v~~~~g~T~--d~--~~---------~~~~------------------ 45 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLV----KKKKAIVEDEEGVTR--DP--VQ---------DTVE------------------ 45 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHH----C----------------CC--SE---------EEEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh----CCCCceecCCCCCcc--ce--ee---------EEEE------------------
Confidence 4789999999999999999999 556677777777521 11 10 0111
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcH-H-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPA-P-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~-~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.++||||+.... . +.+.+. .........+|.+++|+|+.......+.. +...+.....+.
T Consensus 46 ------~~~~~~~l~DT~G~~~~~~~~~~~~~~-~~~~~~~~~ad~il~V~D~~~~~~~~d~~-----i~~~l~~~~~p~ 113 (439)
T 1mky_A 46 ------WYGKTFKLVDTCGVFDNPQDIISQKMK-EVTLNMIREADLVLFVVDGKRGITKEDES-----LADFLRKSTVDT 113 (439)
T ss_dssp ------ETTEEEEEEECTTTTSSGGGCCCHHHH-HHHHHHHTTCSEEEEEEETTTCCCHHHHH-----HHHHHHHHTCCE
T ss_pred ------ECCeEEEEEECCCccccccchHHHHHH-HHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCE
Confidence 123457899999976421 0 100000 11112345689999999997644333221 233344456788
Q ss_pred EEEEeCCCCCCcCCCcchHHHH-HHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 190 VVILNKVDLVSPERSGDSLDEL-EKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~-~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
++|+||+|+.... .... .. +.++.-...+.+|+.++.|++++++.+.
T Consensus 114 ilv~NK~D~~~~~-----~~~~~~~-~~~lg~~~~~~iSA~~g~gv~~L~~~i~ 161 (439)
T 1mky_A 114 ILVANKAENLREF-----EREVKPE-LYSLGFGEPIPVSAEHNINLDTMLETII 161 (439)
T ss_dssp EEEEESCCSHHHH-----HHHTHHH-HGGGSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred EEEEeCCCCcccc-----HHHHHHH-HHhcCCCCEEEEeccCCCCHHHHHHHHH
Confidence 9999999976420 1112 22 2233322345589999999999887763
No 22
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.46 E-value=2.8e-14 Score=121.33 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=92.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|.+|+|||||+|+|+. .+.. +.+.+|.+...... ...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g----~~~~-~~~~pg~tv~~~~~-------------~~~------------------ 48 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG----TKQY-VANWPGVTVEKKEG-------------VFT------------------ 48 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT----TCEE-EEECTTSCCEEEEE-------------EEE------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHC----CCCc-ccCCCCceEEEEEE-------------EEE------------------
Confidence 45689999999999999999994 3322 45556642211100 000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.|+||||...... ..+.+. ...+ .....+.+++|+|+.+...... +...+.....|.
T Consensus 49 ------~~~~~~~l~DtpG~~~~~~~~~~e~v~-~~~~-~~~~~d~ii~V~D~t~~~~~~~-------~~~~l~~~~~pv 113 (258)
T 3a1s_A 49 ------YKGYTINLIDLPGTYSLGYSSIDEKIA-RDYL-LKGDADLVILVADSVNPEQSLY-------LLLEILEMEKKV 113 (258)
T ss_dssp ------ETTEEEEEEECCCCSSCCSSSHHHHHH-HHHH-HHSCCSEEEEEEETTSCHHHHH-------HHHHHHTTTCCE
T ss_pred ------ECCeEEEEEECCCcCccCCCCHHHHHH-HHHH-hhcCCCEEEEEeCCCchhhHHH-------HHHHHHhcCCCE
Confidence 1235688999999764321 111110 0111 1135799999999997644322 122223346788
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|+||+|+............+...+ + .+++ +|++++.|+++++..+
T Consensus 114 ilv~NK~Dl~~~~~i~~~~~~l~~~l---g--~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 114 ILAMTAIDEAKKTGMKIDRYELQKHL---G--IPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp EEEEECHHHHHHTTCCBCHHHHHHHH---C--SCEEECCTTTCTTHHHHHHHH
T ss_pred EEEEECcCCCCccchHHHHHHHHHHc---C--CCEEEEEeeCCcCHHHHHHHH
Confidence 99999999876544333334443333 2 3455 7999999999988766
No 23
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.46 E-value=2.2e-14 Score=131.46 Aligned_cols=164 Identities=19% Similarity=0.263 Sum_probs=98.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..+-++++|.+|+|||||+|+|+. .+...+...+|++...-.. ...
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~----~~~~~~~~~~gtt~~~~~~-------------~~~----------------- 239 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLG----EERVIVSNVAGTTRDAVDT-------------SFT----------------- 239 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT----STTEEECC------CTTSE-------------EEE-----------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhC----CCccccCCCCCeEEEEEEE-------------EEE-----------------
Confidence 456789999999999999999994 3335666666642211100 011
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHH---HHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPL---ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~---~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+..+.|+||||+...... .+.+.....+.....++++++|+|+.......+.. +...+...+.
T Consensus 240 -------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~-----~~~~~~~~~~ 307 (456)
T 4dcu_A 240 -------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----IAGYAHEAGK 307 (456)
T ss_dssp -------ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTC
T ss_pred -------ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHH-----HHHHHHHcCC
Confidence 12345789999997543211 00000011122345679999999998754333221 2333344567
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.++|+||+|+.+..+ ...+++.+.+++.. ++++++ +|++++.++++++..+.
T Consensus 308 ~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 364 (456)
T 4dcu_A 308 AVVIVVNKWDAVDKDE--STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAII 364 (456)
T ss_dssp EEEEEEECGGGSCCCS--SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred CEEEEEEChhcCCCch--HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHH
Confidence 8899999999987554 23455556565543 245555 89999999999887653
No 24
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.45 E-value=1.5e-14 Score=132.58 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=82.7
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|+|||||+|+|+. .+.+++...+|++. ..... ...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~----~~~a~v~~~~gtT~----d~~~~---------~i~-------------------- 268 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQ----SDRAIVTDLPGTTR----DVVES---------QLV-------------------- 268 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHH----HHBSCCSCCTTCCH----HHHHH---------EEE--------------------
T ss_pred EEEEEcCCCCCHHHHHHHHhC----CCcccccCCCCeeE----EEEEE---------EEE--------------------
Confidence 389999999999999999984 22334444455311 11110 001
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCEEE
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVI 192 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~viv 192 (257)
..+..+.|+||||+.++....+.+...........+|.+++|+|+........ ...+.++ ..+.++|
T Consensus 269 ----~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~--------~~i~~~l~~~piivV 336 (462)
T 3geh_A 269 ----VGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD--------QEIYEQVKHRPLILV 336 (462)
T ss_dssp ----ETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH--------HHHHHHHTTSCEEEE
T ss_pred ----ECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH--------HHHHHhccCCcEEEE
Confidence 22456789999999776665555444445556677899999999986433221 1122333 2578899
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+||+|+.+.... . .++.+....+++ +|++++.|+++++..+.
T Consensus 337 ~NK~Dl~~~~~~----~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 337 MNKIDLVEKQLI----T----SLEYPENITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp EECTTSSCGGGS----T----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred EECCCCCcchhh----H----HHHHhccCCcEEEEECCCCCCHHHHHHHHH
Confidence 999999876432 1 111122233444 89999999998887763
No 25
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.44 E-value=6.4e-15 Score=134.30 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=83.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
.|.++++|.+|+|||||+|+|+ +.+.+++...+|.+. ..... ...
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~T~----d~~~~---------~~~------------------ 47 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGVTR----DRIYS---------SAE------------------ 47 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHE----EEECC---------------CEEE---------ECT------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCCcc----ceEEE---------EEE------------------
Confidence 4789999999999999999998 445566666666421 11100 000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 112 EQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
..+..+.++||+|+.... .+.+.+. .........+|.+++|+|+.......+.. +...+.....|.+
T Consensus 48 ------~~~~~~~l~DT~G~~~~~~~~~~~~~-~~~~~~~~~ad~il~vvD~~~~~~~~d~~-----~~~~l~~~~~pvi 115 (436)
T 2hjg_A 48 ------WLNYDFNLIDTGGIDIGDEPFLAQIR-QQAEIAMDEADVIIFMVNGREGVTAADEE-----VAKILYRTKKPVV 115 (436)
T ss_dssp ------TCSSCCEEEC---------CHHHHHH-HHHHHHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHTTCCSCEE
T ss_pred ------ECCceEEEEECCCCCCcchhHHHHHH-HHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEE
Confidence 234568899999976321 1111111 11122345689999999998754433321 2233334456889
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccCCC
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~~~ 245 (257)
+|+||+|+...... .. . +.++.-...+.+|+.++.|++++++.+....
T Consensus 116 lv~NK~D~~~~~~~---~~---~-~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 116 LAVNKLDNTEMRAN---IY---D-FYSLGFGEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp EEEECCCC-----C---CC---S-SGGGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred EEEECccCccchhh---HH---H-HHHcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence 99999998764321 01 1 1122222345689999999999988764443
No 26
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.43 E-value=6e-14 Score=127.95 Aligned_cols=164 Identities=23% Similarity=0.232 Sum_probs=93.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|++|+|||||+|.|+. ...+++.+.+|++...... ...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g----~~~~~v~~~~gtT~d~~~~-------------~i~----------------- 224 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILN----KERALVSPIPGTTRDPVDD-------------EVF----------------- 224 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHT----STTEEECCCC------CCE-------------EEE-----------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhC----CcccccCCCCCCcCCceEE-------------EEE-----------------
Confidence 346799999999999999999994 4445677777752211100 011
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHH----HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLA----SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~----~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
..+.++.++||+|+....... +.+.....+......+.+++|+|+.......+.. +...+....
T Consensus 225 -------~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~-----i~~~l~~~~ 292 (439)
T 1mky_A 225 -------IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQR-----MAGLMERRG 292 (439)
T ss_dssp -------ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTT
T ss_pred -------ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcC
Confidence 122357799999985433222 1111011122334578999999997643322211 223344556
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+.++|+||+|+.+..+ ...+++...+... ..+++++ +|++++.++++++..+.
T Consensus 293 ~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 293 RASVVVFNKWDLVVHRE--KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp CEEEEEEECGGGSTTGG--GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred CCEEEEEECccCCCchh--hHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 78899999999986542 1234444444322 1344555 89999999999987664
No 27
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.43 E-value=2e-14 Score=132.36 Aligned_cols=154 Identities=25% Similarity=0.288 Sum_probs=93.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|.+|+|||||+|+|+.. +.+++...+|++.+... ....+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~----~~a~vs~~~gTT~d~~~-------------~~i~~------------------ 288 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE----DRAIVTDIPGTTRDVIS-------------EEIVI------------------ 288 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH----TBCCCCCSSCCSSCSCC-------------EEEEE------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCC----CCCccCCCCCeeeeeEE-------------EEEec------------------
Confidence 46899999999999999999953 33455666665221111 11111
Q ss_pred HHHHhcCCCCEEEEecCCCC-CcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCE
Q 025133 113 QLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADV 190 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~v 190 (257)
.+..+.|+||||+. ++....+.+.....+.....+|.+++|+|+.......+. .....+ ..|.+
T Consensus 289 ------~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~--------~il~~l~~~pii 354 (482)
T 1xzp_A 289 ------RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR--------KILERIKNKRYL 354 (482)
T ss_dssp ------TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH--------HHHHHHTTSSEE
T ss_pred ------CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH--------HHHHHhcCCCEE
Confidence 23458899999987 554322222112223344578999999998764322111 111222 45779
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCE-EEEeecCCcChhhhhcCcc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAH-VIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~-i~~s~~~~~~~~~l~~~~~ 242 (257)
+|+||+|+.+... .+++...+ ....+ +.+|++++.|+++++..+.
T Consensus 355 vV~NK~DL~~~~~----~~~~~~~~---~~~~~~i~iSAktg~Gi~eL~~~l~ 400 (482)
T 1xzp_A 355 VVINKVDVVEKIN----EEEIKNKL---GTDRHMVKISALKGEGLEKLEESIY 400 (482)
T ss_dssp EEEEECSSCCCCC----HHHHHHHH---TCSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred EEEECcccccccC----HHHHHHHh---cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 9999999976422 34444432 22223 4489999999999987763
No 28
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.42 E-value=9.1e-14 Score=119.06 Aligned_cols=154 Identities=22% Similarity=0.251 Sum_probs=90.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|.+|+|||||+|+|.... ..+.+-+|.+..... ..+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-----~~v~~~pg~tv~~~~---------------~~~~---------------- 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-----QRVGNWPGVTVERKS---------------GLVK---------------- 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-----CCCCSSSCCCCSCEE---------------EECT----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-----CcccCCCCCcEEEEE---------------EEEe----------------
Confidence 3568999999999999999999531 123344453111000 0000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
. +..+.++||||...... ..+.+. ...+. ....|.+++|+|+++...... +...+.....|.
T Consensus 47 ------~-~~~l~l~DtpG~~~~~~~~~~e~v~-~~~~~-~~~~d~vi~V~D~t~~e~~~~-------~~~~l~~~~~p~ 110 (272)
T 3b1v_A 47 ------K-NKDLEIQDLPGIYSMSPYSPEAKVA-RDYLL-SQRADSILNVVDATNLERNLY-------LTTQLIETGIPV 110 (272)
T ss_dssp ------T-CTTEEEEECCCCSCSSCSSHHHHHH-HHHHH-TTCCSEEEEEEEGGGHHHHHH-------HHHHHHHTCSCE
T ss_pred ------c-CCeEEEEECCCcCccCCCChHHHHH-HHHHh-cCCCCEEEEEecCCchHhHHH-------HHHHHHhcCCCE
Confidence 1 35688999999765321 111110 11111 135789999999987543211 122223346788
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
++|+||+|+............+...+ + .+++ +|++++.|+++++..+.
T Consensus 111 ilv~NK~Dl~~~~~~~~~~~~l~~~l---g--~~vi~~SA~~g~gi~el~~~i~ 159 (272)
T 3b1v_A 111 TIALNMIDVLDGQGKKINVDKLSYHL---G--VPVVATSALKQTGVDQVVKKAA 159 (272)
T ss_dssp EEEEECHHHHHHTTCCCCHHHHHHHH---T--SCEEECBTTTTBSHHHHHHHHH
T ss_pred EEEEEChhhCCcCCcHHHHHHHHHHc---C--CCEEEEEccCCCCHHHHHHHHH
Confidence 99999999875433322334444333 2 3444 79999999999988763
No 29
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.41 E-value=5.1e-14 Score=109.57 Aligned_cols=152 Identities=24% Similarity=0.224 Sum_probs=84.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
+|-++++|.+|+|||||+++|... +.......++.+.... .....
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~~~~~~-------------~~~~~------------------ 45 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLK-------------EGVVE------------------ 45 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHC----CC-----------CCE-------------EEEEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC----CeeeccCCCCceecce-------------EEEEE------------------
Confidence 467899999999999999999853 2122222222211000 00001
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 112 EQLVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+..+.++||||..... .+.... .......+.+++|+|+.......... +...+.+...
T Consensus 46 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~ 109 (161)
T 2dyk_A 46 ------TDRGRFLLVDTGGLWSGDKWEKKIQEKV-----DRALEDAEVVLFAVDGRAELTQADYE-----VAEYLRRKGK 109 (161)
T ss_dssp ------ETTEEEEEEECGGGCSSSSCCHHHHHHH-----HHHTTTCSEEEEEEESSSCCCHHHHH-----HHHHHHHHTC
T ss_pred ------eCCceEEEEECCCCCCccchHHHHHHHH-----HHHHHhCCEEEEEEECCCcccHhHHH-----HHHHHHhcCC
Confidence 122357899999977521 111110 11223578999999998743222211 2233444567
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
|.++|+||+|+.+..+. .. +.. +.+-..-+..|++++.|+++++..+
T Consensus 110 p~ilv~nK~Dl~~~~~~---~~---~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 110 PVILVATKVDDPKHELY---LG---PLY-GLGFGDPIPTSSEHARGLEELLEAI 156 (161)
T ss_dssp CEEEEEECCCSGGGGGG---CG---GGG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred CEEEEEECcccccchHh---HH---HHH-hCCCCCeEEEecccCCChHHHHHHH
Confidence 88999999999875321 11 112 2222122448999999999988754
No 30
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.40 E-value=4.4e-14 Score=128.73 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=92.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|.+|+|||||+|+|+. .....+...+|++.+.-. ....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~----~~~~~~~~~~gtT~d~~~-------------~~~~----------------- 219 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG----EERVIVSNVAGTTRDAVD-------------TSFT----------------- 219 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT----STTEEEC---------CC-------------EEEE-----------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC----CCceeecCCCCceeeeeE-------------EEEE-----------------
Confidence 446789999999999999999994 333555666664221100 0011
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHH---HhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~---~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
..+..+.|+||||+....... +.+.....+.....++.+++|+|+.......+.. +...+.....
T Consensus 220 -------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-----~~~~~~~~~~ 287 (436)
T 2hjg_A 220 -------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----IAGYAHEAGK 287 (436)
T ss_dssp -------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTC
T ss_pred -------ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-----HHHHHHHcCC
Confidence 122347899999975432110 0000001112334578999999998754332211 2223333456
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++|+||+|+.+..+. ..+++.+.+.+.. .+++++ +|++++.++++++...
T Consensus 288 ~iiiv~NK~Dl~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i 343 (436)
T 2hjg_A 288 AVVIVVNKWDAVDKDES--TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 343 (436)
T ss_dssp EEEEEEECGGGSCCCTT--HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred cEEEEEECccCCCcchH--HHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHH
Confidence 78999999999876542 2233444343321 345555 8999999999987655
No 31
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.40 E-value=8.9e-13 Score=106.29 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=88.9
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.....+-++|+|.+|+|||||+++|+.. +.......+. .+.....+ .
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~----~~~~~~~~~t--~~~~~~~~-------------~-------------- 59 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPA----QSSSKHITAT--VGYNVETF-------------E-------------- 59 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCC----C----CCCCC--SSEEEEEE-------------E--------------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcC----CCcccccccc--cceeEEEE-------------E--------------
Confidence 4456678999999999999999999842 2221111111 11111000 0
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH--H
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I 185 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--l 185 (257)
..+..+.|+||||.......... ....++.+++|+|+........... . +...... +
T Consensus 60 ----------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~D~~~~~s~~~~~~-~--~~~~~~~~~~ 118 (199)
T 4bas_A 60 ----------KGRVAFTVFDMGGAKKFRGLWET--------YYDNIDAVIFVVDSSDHLRLCVVKS-E--IQAMLKHEDI 118 (199)
T ss_dssp ----------ETTEEEEEEEECCSGGGGGGGGG--------GCTTCSEEEEEEETTCGGGHHHHHH-H--HHHHHTSHHH
T ss_pred ----------eCCEEEEEEECCCCHhHHHHHHH--------HHhcCCEEEEEEECCcHHHHHHHHH-H--HHHHHhChhh
Confidence 22456889999997544332221 1235789999999986532111000 0 1111111 1
Q ss_pred --------hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHH----hCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 186 --------AFADVVILNKVDLVSPERSGDSLDELEKEIHE----INSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 186 --------~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~----~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..+.++|+||+|+.+... ..++...+.. ......++ +|++++.++++++..+.
T Consensus 119 ~~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (199)
T 4bas_A 119 RRELPGGGRVPFLFFANKMDAAGAKT----AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQ 184 (199)
T ss_dssp HSBCTTSCBCCEEEEEECTTSTTCCC----HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred hhcccccCCCCEEEEEECcCCCCCCC----HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHH
Confidence 557889999999987744 3334333321 11334555 79999999999887664
No 32
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.40 E-value=3.7e-13 Score=109.78 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=91.7
Q ss_pred EEEEccccccccCcccCCCc---ceeEEEEEecCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCc
Q 025133 11 AVRIDETTHEFSNSHENDDV---SVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGA 86 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~---~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~-v~ii~~~~g~~~~~d~~~~~~~~~~~ 86 (257)
+++++++++.|+. ..+.+. +...++++|++|||||||+|.|+. .. .+.+...+|.+...
T Consensus 3 ~l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g----~~~~~~~~~~~G~~~~~------------ 65 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTN----QKSLARTSKTPGRTQLI------------ 65 (210)
T ss_dssp --------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCC----C-------------CCE------------
T ss_pred chhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhC----CCccccccCCCccceee------------
Confidence 4788999999874 333332 334799999999999999999984 22 23333444431100
Q ss_pred eeeeeeecCCCceeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcH-------HHHHhcccccccccceeeeeEEEE
Q 025133 87 LVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA-------PLASVLWLDDQLESAVRLDSIITV 159 (257)
Q Consensus 87 ~~~~~~~l~~gcicc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~-------~~~~~~~~~~~~~~~~~~~~vi~v 159 (257)
....+ +..+.++||||..... .+...+ ...+.....++.++++
T Consensus 66 ---~~~~~-------------------------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v 115 (210)
T 1pui_A 66 ---NLFEV-------------------------ADGKRLVDLPGYGYAEVPEEMKRKWQRAL--GEYLEKRQSLQGLVVL 115 (210)
T ss_dssp ---EEEEE-------------------------ETTEEEEECCCCC------CCHHHHHHHH--HHHHHHCTTEEEEEEE
T ss_pred ---EEEEe-------------------------cCCEEEEECcCCcccccCHHHHHHHHHHH--HHHHHhhhcccEEEEE
Confidence 00000 1146799999975421 111110 1112222346788999
Q ss_pred EeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhh
Q 025133 160 VDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 160 vDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~ 238 (257)
+|+.......+.. +...+.....+.+++.||+|+.+..+....++.+...+.+.......+ +|+..+.++++++
T Consensus 116 ~d~~~~~~~~~~~-----~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~ 190 (210)
T 1pui_A 116 MDIRHPLKDLDQQ-----MIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLR 190 (210)
T ss_dssp EETTSCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHH
T ss_pred EECCCCCchhHHH-----HHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHH
Confidence 9987543221110 122334445677888999999876432122445555555443333333 6889999999888
Q ss_pred cCcc
Q 025133 239 NCRA 242 (257)
Q Consensus 239 ~~~~ 242 (257)
..+.
T Consensus 191 ~~l~ 194 (210)
T 1pui_A 191 QKLD 194 (210)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 33
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.40 E-value=6.8e-13 Score=118.13 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=90.1
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
+..+++++++|++|+|||||+|.|+.. . ..+.+.++.+.+.... ...+
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~----~-~~~~~~~~~T~d~~~~-------------~i~~-------------- 223 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGL----T-QKVDTKLFTTMSPKRY-------------AIPI-------------- 223 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC----------------CCSCEE-------------EEEE--------------
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCC----C-ccccCCcccccCCEEE-------------EEEE--------------
Confidence 346788999999999999999999942 2 2333444432211111 1111
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCC--cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-
Q 025133 109 QALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI- 185 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~--~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql- 185 (257)
.+..+.++||+|+.. |....+.+ ...+.....+|.+++|+|++.......... ..+...+.++
T Consensus 224 ----------~g~~v~l~DT~G~i~~lp~~lve~f--~~tl~~~~~aD~il~VvD~s~~~~~~~~~~--~~~~~~L~~l~ 289 (364)
T 2qtf_A 224 ----------NNRKIMLVDTVGFIRGIPPQIVDAF--FVTLSEAKYSDALILVIDSTFSENLLIETL--QSSFEILREIG 289 (364)
T ss_dssp ----------TTEEEEEEECCCBCSSCCGGGHHHH--HHHHHGGGGSSEEEEEEETTSCHHHHHHHH--HHHHHHHHHHT
T ss_pred ----------CCEEEEEEeCCCchhcCCHHHHHHH--HHHHHHHHhCCEEEEEEECCCCcchHHHHH--HHHHHHHHHhC
Confidence 123467999999643 44333332 122334566899999999876431111000 0012233343
Q ss_pred --hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh-CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 186 --AFADVVILNKVDLVSPERSGDSLDELEKEIHEI-NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 186 --~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~-~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..+.++|.||+|+.+... ....+.+....+.+ .+..+++ +|+.++.++++++..+.
T Consensus 290 ~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 290 VSGKPILVTLNKIDKINGDL-YKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIY 349 (364)
T ss_dssp CCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCchH-HHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHH
Confidence 346788999999987531 01122232233444 3333444 79999999999987663
No 34
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.39 E-value=3.7e-14 Score=125.20 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=90.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
++-|+++|++|||||||+|+|.... . .+.+.+.++...... ...+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~----~-~i~~~~ftTl~p~~g-------------~v~~----------------- 202 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK----P-KIADYHFTTLVPNLG-------------MVET----------------- 202 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC----C-EESSTTSSCCCCCEE-------------EEEC-----------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC----C-ccccCCccccCceEE-------------EEEe-----------------
Confidence 3468999999999999999998532 1 123333331211100 0111
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccch-----HHHHhhhccCCChhHHHHH--
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-----LFQIDKYRHLSSYPEAIHQ-- 184 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~-----~~~~~~~~~~~~~~~~~~q-- 184 (257)
.....++|+||||+.+.......+. ...+++..+++.+++|+|++.. ...+.. +...+.+
T Consensus 203 ------~~~~~~~l~DtPG~i~~a~~~~~l~-~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~------~~~eL~~~~ 269 (342)
T 1lnz_A 203 ------DDGRSFVMADLPGLIEGAHQGVGLG-HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLT------INQELSEYN 269 (342)
T ss_dssp ------SSSCEEEEEEHHHHHHHTTCTTTTH-HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHH------HHHHHHHSC
T ss_pred ------CCCceEEEecCCCCcccccccchhH-HHHHHHHHhccEEEEEEECCcccccChHHHHHH------HHHHHHHhh
Confidence 1125688999999643211000000 1123445568999999999652 222111 1112222
Q ss_pred ---HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 185 ---IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 185 ---l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
...|.++|+||+|+.+.. +.+....+.+....+++ +|+.++.++++++..+....
T Consensus 270 ~~l~~~p~ilV~NK~Dl~~~~------e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 270 LRLTERPQIIVANKMDMPEAA------ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp SSTTTSCBCBEEECTTSTTHH------HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred hhhcCCCEEEEEECccCCCCH------HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 246789999999998653 22333333333223444 89999999999988774433
No 35
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.38 E-value=5.5e-14 Score=111.79 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=85.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|.+|+|||||+|+|... ....+...++.+.+.. .....+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~----~~~~~~~~~~~t~~~~-------------~~~~~~------------------ 49 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR----EAAIVTDIAGTTRDVL-------------REHIHI------------------ 49 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS----CCSCCCSSTTCCCSCE-------------EEEEEE------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCC----CcceeeCCCCceecee-------------eEEEEE------------------
Confidence 35889999999999999999853 2222333444311110 011111
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~ 189 (257)
.+..+.++||||+.......+.+.....+.....++.+++|+|+......... .+...+.+. ..|.
T Consensus 50 ------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-----~~~~~~~~~~~~~~p~ 118 (172)
T 2gj8_A 50 ------DGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-----EIWPEFIARLPAKLPI 118 (172)
T ss_dssp ------TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHH-----HHCHHHHHHSCTTCCE
T ss_pred ------CCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-----HHHHHHHHhcccCCCE
Confidence 12346799999986543222211111112234567899999999754321110 011122222 3567
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
++|+||+|+.+.... . . .. ...+++ +|++++.++++++..+..
T Consensus 119 ilv~NK~Dl~~~~~~-~--~-------~~-~~~~~~~~SA~~g~gv~~l~~~l~~ 162 (172)
T 2gj8_A 119 TVVRNKADITGETLG-M--S-------EV-NGHALIRLSARTGEGVDVLRNHLKQ 162 (172)
T ss_dssp EEEEECHHHHCCCCE-E--E-------EE-TTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred EEEEECccCCcchhh-h--h-------hc-cCCceEEEeCCCCCCHHHHHHHHHH
Confidence 899999998653210 0 0 01 223455 799999999999887643
No 36
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.37 E-value=8.3e-12 Score=113.24 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=86.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|++|+||||++.+|... ..|++++++..|+.. .+....+... ...++.+ ..+....+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R-~aa~eqL~~~~~~~gvpv----------~~~~~~~dp 167 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR-PGAYHQLRQLLDRYHIEV----------FGNPQEKDA 167 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS-THHHHHHHHHHGGGTCEE----------ECCTTCCCH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc-hhHHHHHHHHHHhcCCcE----------EecCCCCCH
Confidence 4568999999999999999999763 568999999998764 2211111110 0001100 111111122
Q ss_pred H----HHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 108 V----QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 108 ~----~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
. ..+.... ..++|++||||+|... .......+. .+......+.+++|+|+........ ....+
T Consensus 168 ~~i~~~al~~a~--~~~~DvVIIDTaGrl~~d~~lm~el~---~i~~~~~pd~vlLVvDA~~gq~a~~-------~a~~f 235 (443)
T 3dm5_A 168 IKLAKEGVDYFK--SKGVDIIIVDTAGRHKEDKALIEEMK---QISNVIHPHEVILVIDGTIGQQAYN-------QALAF 235 (443)
T ss_dssp HHHHHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGHHH-------HHHHH
T ss_pred HHHHHHHHHHHH--hCCCCEEEEECCCcccchHHHHHHHH---HHHHhhcCceEEEEEeCCCchhHHH-------HHHHH
Confidence 2 2222221 3569999999999654 333333221 1223345688999999987644322 12223
Q ss_pred HHHhhcCEEEEeCCCCCCc
Q 025133 183 HQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~ 201 (257)
.+.-....+|+||+|....
T Consensus 236 ~~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 236 KEATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp HHSCTTEEEEEECCSSCSS
T ss_pred HhhCCCeEEEEECCCCccc
Confidence 3222356789999998765
No 37
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.37 E-value=4.2e-12 Score=99.98 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=81.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+++|... +.......+|. +.. .....+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~----~~~~~~~~~~~----~~~-----------~~~~~~~---------------- 48 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK----QERDLHEQLGE----DVY-----------ERTLTVD---------------- 48 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC---------CCCSSS----SEE-----------EEEEEET----------------
T ss_pred EEEEEEECCCCccHHHHHHHHhcC----CCccccCcccc----cee-----------EEEEEEC----------------
Confidence 346899999999999999999842 22222222232 100 0011111
Q ss_pred HHHHHhcCCCCEEEEecCCCCCc--HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----H
Q 025133 112 EQLVQRKERLDHILLETTGLANP--APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----I 185 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~--~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l 185 (257)
.....+.++||||.... ..+.... ....+.+++|+|......... .. .+...+.+ -
T Consensus 49 ------~~~~~~~~~D~~g~~~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~-~~---~~~~~l~~~~~~~ 110 (175)
T 2nzj_A 49 ------GEDTTLVVVDTWEAEKLDKSWSQESC--------LQGGSAYVIVYSIADRGSFES-AS---ELRIQLRRTHQAD 110 (175)
T ss_dssp ------TEEEEEEEECCC-------CHHHHHT--------TTSCSEEEEEEETTCHHHHHH-HH---HHHHHHHHCC---
T ss_pred ------CEEEEEEEEecCCCCccchhhhHHhh--------cccCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhhccC
Confidence 11235789999997642 1111111 123688999999986443211 10 01111222 1
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..|.++|+||+|+.+..+. ..+....+....+ .+++ .|++++.|+++++..+
T Consensus 111 ~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l 163 (175)
T 2nzj_A 111 HVPIILVGNKADLARCREV--SVEEGRACAVVFD--CKFIETSATLQHNVAELFEGV 163 (175)
T ss_dssp -CCEEEEEECTTCTTTCCS--CHHHHHHHHHHHT--SEEEECBTTTTBSHHHHHHHH
T ss_pred CCCEEEEEEChhhcccccc--CHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHH
Confidence 4577899999999875443 1233444443333 3555 7999999999988765
No 38
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.36 E-value=2.6e-12 Score=106.58 Aligned_cols=162 Identities=13% Similarity=0.079 Sum_probs=87.6
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+.+-++|+|.+|+|||||+|+|+. .+.. ....++.+.... .. ...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~----~~~~-~~~~~~~t~~~~------------~~-~~~---------------- 72 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR----ANVD-VQSYSFTTKNLY------------VG-HFD---------------- 72 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT----TCEE-EECC-----CEE------------EE-EEE----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC----CCCc-cCCCCCcceeee------------ee-eee----------------
Confidence 3456899999999999999999984 3333 222222211100 00 000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHH----HHHhcccccccccceeeeeEEEEEeccchHHHH-hhhccCCChhHHHHH
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLFQI-DKYRHLSSYPEAIHQ 184 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~----~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~-~~~~~~~~~~~~~~q 184 (257)
..+..+.|+||||..+... ..+...... + ....+.+++|+|+....... .. ....+.+
T Consensus 73 --------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~--~~~~d~~i~v~d~~~~~s~~~~~------~~~~~~~ 135 (228)
T 2qu8_A 73 --------HKLNKYQIIDTPGLLDRAFENRNTIEMTTITA-L--AHINGVILFIIDISEQCGLTIKE------QINLFYS 135 (228)
T ss_dssp --------ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH-H--HTSSEEEEEEEETTCTTSSCHHH------HHHHHHH
T ss_pred --------cCCCeEEEEECCCCcCcccchhhhHHHHHHHH-h--hccccEEEEEEecccccCcchHH------HHHHHHH
Confidence 1234578999999853210 000000000 1 22357899999997642210 00 0112222
Q ss_pred H-----hhcCEEEEeCCCCCCcCCCcchH-HHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 185 I-----AFADVVILNKVDLVSPERSGDSL-DELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 185 l-----~~~~vivlNK~D~~~~~~~~~~l-~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+ ..|.++|+||+|+.+..+..... +.+....+..++..+++ +|++++.|+++++..+.
T Consensus 136 l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 200 (228)
T 2qu8_A 136 IKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITAC 200 (228)
T ss_dssp HHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHH
Confidence 2 45778999999998765542222 23334334333334565 79999999999887653
No 39
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=7.2e-13 Score=106.82 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||.......... ....++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~iilV~d~~~~~s~~~~~----~~~~~i~~~~~~~~piiiv~NK~D 139 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPM--------YYRGSAAAVIVYDITKQDSFYTLK----KWVKELKEHGPENIVMAIAGNKCD 139 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHH--------HHTTCSEEEEEEETTCTHHHHHHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEcCCCchhhHhhhHH--------hhccCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhCCCCCcEEEEEECcc
Confidence 45789999996543322211 123468999999998654321110 012222222 456789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCCC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATVN 248 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~ 248 (257)
+.+..+. ..+.+.+..+..+ .+++ +|++++.++++++..+.......
T Consensus 140 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 140 LSDIREV--PLKDAKEYAESIG--AIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp GGGGCCS--CHHHHHHHHHTTT--CEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred ccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 9754332 2455666555543 4555 79999999999998875544443
No 40
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.34 E-value=7.4e-13 Score=111.72 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=86.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCC-CcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF-GEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~-g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
..-++++|.+|+|||||+|+|+.. +..+....+ |.+.... .....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~----~~~~~~~~~~~~T~~~~-------------~~~~~----------------- 66 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ----RRFFSRLGATSVTRACT-------------TGSRR----------------- 66 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS----CCC---------CCSCE-------------EEEEE-----------------
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC----CCccccCCCCCccccEE-------------EEEEE-----------------
Confidence 346899999999999999999953 222222211 1100000 00000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHH-Hhcccccc----cccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQ----LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~-~~~~~~~~----~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
..+..+.|+||||+.++.... +.+. ... ......++.+++|+|+.++...... +...+.++
T Consensus 67 -------~~~~~i~liDTPG~~~~~~~~~~~~~-~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~------~~~~l~~~ 132 (247)
T 3lxw_A 67 -------WDKCHVEVVDTPDIFSSQVSKTDPGC-EERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ------AVRQVRDM 132 (247)
T ss_dssp -------ETTEEEEEEECCSCSSTTHHHHSTTS-HHHHHHHHHHTTCCSEEEEEEETTBCCHHHHH------HHHHHHHH
T ss_pred -------ECCcEEEEEECCCCCCCCCCcHHHHH-HHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHH------HHHHHHHH
Confidence 224568899999987654433 2111 111 1122578999999999864322111 12233332
Q ss_pred ------hhcCEEEEeCCCCCCcCCCcchH-----HHHHHHHHHhCCCCEEEEeecC-----CcChhhhhcCcc
Q 025133 186 ------AFADVVILNKVDLVSPERSGDSL-----DELEKEIHEINSLAHVIRSVRC-----QVDLSEVLNCRA 242 (257)
Q Consensus 186 ------~~~~vivlNK~D~~~~~~~~~~l-----~~~~~~l~~~~~~a~i~~s~~~-----~~~~~~l~~~~~ 242 (257)
..+.+++.||+|+.+.. ....+ ..+...++.......++ +... +.++.+|+..+.
T Consensus 133 ~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~g~~~~~~-~~~~~~~~~~~~v~~Ll~~i~ 203 (247)
T 3lxw_A 133 FGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAECGGRVCAF-DNRATGREQEAQVEQLLGMVE 203 (247)
T ss_dssp HCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEEC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred hChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHcCCeEEEE-eCCCCccccHHHHHHHHHHHH
Confidence 56788999999997642 11112 23555566554433223 2221 467888877663
No 41
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.34 E-value=4.1e-13 Score=105.73 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=83.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
...++++|++|+|||||+++|..... .....++.+. +.. . ....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-----~~~~~~~~t~--~~~----------~-~~~~------------------ 46 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-----YIGNWPGVTV--EKK----------E-GEFE------------------ 46 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-----SCC-----CC--CCC----------E-EEEE------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-----eccCCCCcce--eee----------E-EEEE------------------
Confidence 35689999999999999999985311 0111122101 100 0 0000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 112 EQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.++||||...... ..+.+. ...+ .....+.+++|+|+........ +...+.+...|.
T Consensus 47 ------~~~~~l~i~Dt~G~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~v~D~~~~~~~~~-------~~~~~~~~~~p~ 111 (165)
T 2wji_A 47 ------YNGEKFKVVDLPGVYSLTANSIDEIIA-RDYI-INEKPDLVVNIVDATALERNLY-------LTLQLMEMGANL 111 (165)
T ss_dssp ------ETTEEEEEEECCCCSCSSSSSHHHHHH-HHHH-HHHCCSEEEEEEETTCHHHHHH-------HHHHHHHTTCCE
T ss_pred ------ECCcEEEEEECCCcccCCCcchhHHHH-HHHH-hcCCCCEEEEEecCCchhHhHH-------HHHHHHhcCCCE
Confidence 1123577999999764321 111110 0111 1124689999999987543211 112223345678
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|.||+|+..........+.+.. ..+ .+++ .|++++.|+++++..+
T Consensus 112 ilv~nK~Dl~~~~~~~~~~~~~~~---~~~--~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 112 LLALNKMDLAKSLGIEIDVDKLEK---ILG--VKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp EEEEECHHHHHHTTCCCCHHHHHH---HHT--SCEEECBGGGTBSHHHHHHHH
T ss_pred EEEEEchHhccccChhhHHHHHHH---HhC--CCEEEEEcCCCCCHHHHHHHH
Confidence 999999998754332122233322 222 3444 8999999999988764
No 42
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.34 E-value=4e-13 Score=115.76 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCEEEEecCCCCC------cHH---HHHhcccccccccceeee-eEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 120 RLDHILLETTGLAN------PAP---LASVLWLDDQLESAVRLD-SIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 120 ~~~~ilIDt~G~~~------~~~---~~~~~~~~~~~~~~~~~~-~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..++.|+||||+.. +.. ....+. ...+. ..+ .+++|+|+.......+.. .+...+.....+.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~il~v~d~~~~~~~~~~~----~~~~~~~~~~~~~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVT---KENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRT 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHH-HHHHT---STTEEEEEEEESSSCGGGCHHH----HHHHHHCTTCSSE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHH-HHHHc---CCCeEEEEEecCCcchhhhHHH----HHHHHhCCCCCeE
Confidence 37899999999864 221 111111 11111 233 455899997643321110 0111222224577
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|+||+|+.+.... ..+.+...+.... ++.+++ .|++++.++++++..+
T Consensus 196 i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l 247 (299)
T 2aka_B 196 IGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAAL 247 (299)
T ss_dssp EEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHH
T ss_pred EEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHH
Confidence 999999999876431 1122211111111 233444 7999999998887663
No 43
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=2.3e-12 Score=103.19 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=87.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.. .. .-. .+. .+.+.. ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~---~~-~~~--~~t--~~~~~~-------------~~~----------------- 56 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN---EV-VHT--SPT--IGSNVE-------------EIV----------------- 56 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT---SC-EEE--ECC--SCSSCE-------------EEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC---CC-CcC--cCC--CccceE-------------EEE-----------------
Confidence 4467899999999999999999952 11 111 111 111100 000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHHHH---H
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQ---I 185 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~q---l 185 (257)
..+..+.++||||.......... ....++.+++|+|+..... ..... +...... -
T Consensus 57 -------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~~~~-----~~~~~~~~~~~ 116 (187)
T 1zj6_A 57 -------INNTRFLMWDIGGQESLRSSWNT--------YYTNTEFVIVVVDSTDRERISVTREE-----LYKMLAHEDLR 116 (187)
T ss_dssp -------ETTEEEEEEECCC----CGGGHH--------HHTTCCEEEEEEETTCTTTHHHHHHH-----HHHHHTSGGGT
T ss_pred -------ECCEEEEEEECCCCHhHHHHHHH--------HhcCCCEEEEEEeCCCHHHHHHHHHH-----HHHHHhchhhC
Confidence 12345789999997543222111 1234789999999986421 11111 1111111 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCccCCCCCC
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRAYDATVN 248 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~~ 248 (257)
..+.++|+||+|+.+... .+++...+... .....++ .|++++.|+++++..+.......
T Consensus 117 ~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 117 KAGLLIFANKQDVKECMT----VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TCEEEEEEECTTSTTCCC----HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred CCeEEEEEECCCCcCCCC----HHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 456789999999987533 34555554331 1223555 78999999999988775444433
No 44
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.33 E-value=1.9e-11 Score=98.87 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=92.5
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
...+..-++|+|.+|+|||||+++|+.... .....++ .+ ........+.
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~------------~~~~~~~~~~------------ 58 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEF------VEDYEPT-KA------------DSYRKKVVLD------------ 58 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCC------CTTCCTT-CC------------EEEEEEEEET------------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCC------CCCCCCc-cc------------eEEEEEEEEC------------
Confidence 344566799999999999999999985310 1111111 10 0000011111
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-- 185 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-- 185 (257)
.....+.|+||||..........+ ....+.+++|+|+.......... .+...+.+.
T Consensus 59 ----------~~~~~~~l~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~ 116 (206)
T 2bov_A 59 ----------GEEVQIDILDTAGQEDYAAIRDNY--------FRSGEGFLCVFSITEMESFAATA----DFREQILRVKE 116 (206)
T ss_dssp ----------TEEEEEEEEECCCTTCCHHHHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHTT
T ss_pred ----------CEEEEEEEEcCCChhhhHHHHHHH--------HhhCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcC
Confidence 112457899999977665544322 12468999999998754321110 011112221
Q ss_pred --hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 186 --AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 186 --~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..|.++|+||+|+.+..+. ..+.+..+.+..+ .+++ +|++++.|+++++..+.
T Consensus 117 ~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~ 172 (206)
T 2bov_A 117 DENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWN--VNYVETSAKTRANVDKVFFDLM 172 (206)
T ss_dssp CSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHH
T ss_pred CCCCCEEEEEeccCccccccc--cHHHHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 3467899999999875432 2455566665544 3555 89999999999887653
No 45
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.33 E-value=9.1e-14 Score=120.84 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.6
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
....|.++|+|.+|+|||||+|+|+..
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 567899999999999999999999954
No 46
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.32 E-value=9.8e-12 Score=97.08 Aligned_cols=150 Identities=14% Similarity=0.082 Sum_probs=77.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|+|||||+++|.. .+.......+|.+. + ....+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~----~~~~~~~~~~~~~~--~--------------~~~~~~------------------ 45 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG----VEDGPEAEAAGHTY--D--------------RSIVVD------------------ 45 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC----C----------CEE--E--------------EEEEET------------------
T ss_pred EEEEECCCCCCHHHHHHHHcC----ccccCCCCccccce--E--------------EEEEEC------------------
Confidence 478999999999999999984 23222222333211 0 001111
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcC
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFAD 189 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~ 189 (257)
.....+.++||||.......... .....+.+++|+|......... ... +...+.+ -..|.
T Consensus 46 ----~~~~~~~i~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~p~ 109 (166)
T 3q72_A 46 ----GEEASLMVYDIWEQDGGRWLPGH--------CMAMGDAYVIVYSVTDKGSFEK-ASE---LRVQLRRARQTDDVPI 109 (166)
T ss_dssp ----TEEEEEEEEECC-----------------------CCEEEEEEETTCHHHHHH-HHH---HHHHHHHCC---CCCE
T ss_pred ----CEEEEEEEEECCCCccchhhhhh--------hhhhCCEEEEEEECCCHHHHHH-HHH---HHHHHHHhcCCCCCCE
Confidence 12345779999997654333221 1245688999999986543211 100 1111111 13467
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|.||+|+.+..+. ..+.........+ ++++ .|++++.|+++++..+
T Consensus 110 ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 110 ILVGNKSDLVRSREV--SVDEGRACAVVFD--CKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEEEECTTCCSSCCS--CHHHHHHHHHHTT--CEEEECBGGGTBSHHHHHHHH
T ss_pred EEEEecccccccccc--CHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHHHH
Confidence 899999999876543 2233333333332 4666 7999999999988654
No 47
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=2.2e-12 Score=103.08 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=89.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+...++++|.+|+|||||+++|+.. + ......++.+..... ....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~----~-~~~~~~~~~t~~~~~-------------~~~~----------------- 50 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE----N-VYIGNWPGVTVEKKE-------------GEFE----------------- 50 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT----C-EEEEECTTSCCEEEE-------------EEEE-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC----C-ccccCCCCeeccceE-------------EEEE-----------------
Confidence 4567999999999999999999842 2 233344443111100 0011
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHH--HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+..+.++||||...... ..+.+. ...+ .....+.+++|+|+..+..... +...+.....|
T Consensus 51 -------~~~~~~~l~Dt~G~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~v~d~~~~~~~~~-------~~~~~~~~~~p 114 (188)
T 2wjg_A 51 -------YNGEKFKVVDLPGVYSLTANSIDEIIA-RDYI-INEKPDLVVNIVDATALERNLY-------LTLQLMEMGAN 114 (188)
T ss_dssp -------ETTEEEEEEECCCCSCCSSSSHHHHHH-HHHH-HHHCCSEEEEEEEGGGHHHHHH-------HHHHHHTTTCC
T ss_pred -------eCCcEEEEEECCCcCccccccHHHHHH-HHHH-hccCCCEEEEEecchhHHHHHH-------HHHHHHhcCCC
Confidence 1234577999999765421 011010 0111 1123688999999987543211 11222233467
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCccC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~~ 243 (257)
.++|.||+|+............+.+. .+ ..-+.+|++.+.++++++..+..
T Consensus 115 iilv~nK~Dl~~~~~~~~~~~~~~~~---~~-~~~~~~Sa~~~~~v~~l~~~i~~ 165 (188)
T 2wjg_A 115 LLLALNKMDLAKSLGIEIDVDKLEKI---LG-VKVVPLSAAKKMGIEELKKAISI 165 (188)
T ss_dssp EEEEEECHHHHHHTTCCCCHHHHHHH---HT-SCEEECBGGGTBSHHHHHHHHHH
T ss_pred EEEEEEhhhccccccchHHHHHHHHH---hC-CCeEEEEecCCCCHHHHHHHHHH
Confidence 88999999987654332223333332 22 22344789999999998877643
No 48
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.32 E-value=3.3e-12 Score=102.55 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=88.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.... .. .....+.+.. . ....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~--~~~~~t~~~~------------~-~~~~----------------- 63 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNA----QS--QNILPTIGFS------------I-EKFK----------------- 63 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGG----CC--SSCCCCSSEE------------E-EEEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC----CC--CCcCCcccee------------E-EEEE-----------------
Confidence 445689999999999999999985310 00 0011101111 0 0111
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-----H
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-----I 185 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-----l 185 (257)
..+..+.|+||||......... .....++.+++|+|+........... . +...... -
T Consensus 64 -------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~ 125 (190)
T 2h57_A 64 -------SSSLSFTVFDMSGQGRYRNLWE--------HYYKEGQAIIFVIDSSDRLRMVVAKE-E--LDTLLNHPDIKHR 125 (190)
T ss_dssp -------CSSCEEEEEEECCSTTTGGGGG--------GGGGGCSEEEEEEETTCHHHHHHHHH-H--HHHHHHSTTTTTS
T ss_pred -------ECCEEEEEEECCCCHHHHHHHH--------HHHhcCCEEEEEEECCCHHHHHHHHH-H--HHHHHhChhhccC
Confidence 1235688999999765433221 11245789999999987532211100 0 1111111 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHH--HhC-CCCEEE-EeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIH--EIN-SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~--~~~-~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..+.++|+||+|+.+... .+++...+. .+. ....++ .|++++.|+++++..+
T Consensus 126 ~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 126 RIPILFFANKMDLRDAVT----SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp CCCEEEEEECTTSTTCCC----HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCeEEEEEeCcCcccCCC----HHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHH
Confidence 456789999999987543 455555553 221 234555 7899999999988765
No 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.31 E-value=3.4e-11 Score=95.16 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=58.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-------HhhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------l~~~~vivl 193 (257)
..+.++||||......... .....++.+++|+|+.......... .+...+.+ ...|.++|+
T Consensus 58 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~p~ilv~ 125 (182)
T 1ky3_A 58 ATMQVWDTAGQERFQSLGV--------AFYRGADCCVLVYDVTNASSFENIK----SWRDEFLVHANVNSPETFPFVILG 125 (182)
T ss_dssp EEEEEECCC------------------CCSTTCCEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSCTTTCCEEEEE
T ss_pred EEEEEEECCCChHhhhhhH--------HHhhcCCEEEEEEECCChHHHHHHH----HHHHHHHHHhcccCcCCCcEEEEE
Confidence 4578999999544332221 1123578999999998754321110 01111111 234679999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
||+|+...... ...+......+... ..+++ .|++++.|+++++..+
T Consensus 126 nK~Dl~~~~~~-v~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l 172 (182)
T 1ky3_A 126 NKIDAEESKKI-VSEKSAQELAKSLG-DIPLFLTSAKNAINVDTAFEEI 172 (182)
T ss_dssp ECTTSCGGGCC-SCHHHHHHHHHHTT-SCCEEEEBTTTTBSHHHHHHHH
T ss_pred ECCcccccccc-CCHHHHHHHHHhcC-CCeEEEEecCCCCCHHHHHHHH
Confidence 99999654321 12344444444333 33444 8999999999988765
No 50
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.31 E-value=9.5e-12 Score=100.96 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=83.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+++|.. .+......- .+.+.. ...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~----~~~~~~~~t----~~~~~~-------------~~~------------------ 65 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD----DRLGQHVPT----LHPTSE-------------ELT------------------ 65 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC----C------CC----CCCSCE-------------EEE------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhc----CCCCccCCC----CCceeE-------------EEE------------------
Confidence 34689999999999999999984 222211111 111100 011
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~ 188 (257)
..+..+.++||||......... . ....++.+++|+|+........... . +..... ....|
T Consensus 66 ------~~~~~l~i~Dt~G~~~~~~~~~-----~---~~~~~d~~i~v~D~~~~~s~~~~~~-~--~~~~~~~~~~~~~p 128 (198)
T 1f6b_A 66 ------IAGMTFTTFDLGGHIQARRVWK-----N---YLPAINGIVFLVDCADHERLLESKE-E--LDSLMTDETIANVP 128 (198)
T ss_dssp ------ETTEEEEEEEECC----CCGGG-----G---GGGGCSEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTSC
T ss_pred ------ECCEEEEEEECCCcHhhHHHHH-----H---HHhcCCEEEEEEECCCHHHHHHHHH-H--HHHHHhCcccCCCc
Confidence 1224577999999653322111 1 1235789999999986532111000 0 111111 12457
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---------------CCCEEE-EeecCCcChhhhhcCc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEIN---------------SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---------------~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.++|.||+|+.... ..+++.+.+.... ...+++ .|++++.|+++++..+
T Consensus 129 iilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 193 (198)
T 1f6b_A 129 ILILGNKIDRPEAI----SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 193 (198)
T ss_dssp EEEEEECTTSTTCC----CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred EEEEEECCCccccC----CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHH
Confidence 78999999997632 2456666554321 233555 7999999999988765
No 51
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.31 E-value=5.7e-12 Score=98.32 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||||........... ....+.+++|+|+.......... .+...+.+. ..|.++|+||+
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAMRDLY--------MKNGQGFALVYSITAQSTFNDLQ----DLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHH--------HHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEEECCChHHHHHHHHHH--------hccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhCcCCCcEEEEEECc
Confidence 457899999976554443322 12368999999998654321110 011122222 35678999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+..+. ..+......+.. +..+++ .|++++.|+++++..+
T Consensus 119 Dl~~~~~~--~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 119 DLEDERVV--GKEQGQNLARQW-CNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp TCGGGCCS--CHHHHHHHHHHT-TSCEEEECBTTTTBSHHHHHHHH
T ss_pred cccccccC--CHHHHHHHHHHc-cCCcEEEecCCCCCCHHHHHHHH
Confidence 99865432 234455544443 345666 7999999999988754
No 52
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.31 E-value=4.4e-13 Score=113.52 Aligned_cols=165 Identities=16% Similarity=0.106 Sum_probs=87.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+...++|+|.+|+|||||+|+|+.. +.......++. ++... ......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~----~~~~~~~~~~~---~t~~~---------~~~~~~---------------- 67 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK----QAFESKLGSQT---LTKTC---------SKSQGS---------------- 67 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS----CCSCCCTTSCC---CCCSC---------EEEEEE----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC----CCcccCCCCCc---eeeee---------EEEEEE----------------
Confidence 34567999999999999999999943 21111111210 00000 000000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
..+.++.|+||||+.+.. .+.+.+. .........++.+++|+|+.++...... +...+.+.
T Consensus 68 --------~~~~~i~iiDTpG~~~~~~~~~~~~~~i~-~~~~~~~~~~d~il~V~d~~~~~~~~~~------~~~~l~~~ 132 (260)
T 2xtp_A 68 --------WGNREIVIIDTPDMFSWKDHCEALYKEVQ-RCYLLSAPGPHVLLLVTQLGRYTSQDQQ------AAQRVKEI 132 (260)
T ss_dssp --------ETTEEEEEEECCGGGGSSCCCHHHHHHHH-HHHHHHTTCCSEEEEEEETTCCCHHHHH------HHHHHHHH
T ss_pred --------eCCCEEEEEECcCCCCCCCCHHHHHHHHH-HHHHhcCCCCcEEEEEEeCCCCCHHHHH------HHHHHHHH
Confidence 224568899999976532 1111110 0111123467999999999863222111 12223333
Q ss_pred -----hhcCEEEEe-CCCCCCcCCCcchH-----HHHHHHHHHhCCC----CEEEEeecCCcChhhhhcCcc
Q 025133 186 -----AFADVVILN-KVDLVSPERSGDSL-----DELEKEIHEINSL----AHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 186 -----~~~~vivlN-K~D~~~~~~~~~~l-----~~~~~~l~~~~~~----a~i~~s~~~~~~~~~l~~~~~ 242 (257)
..+.++++| |+|+.+.. ....+ ..+...++.+... ..+.+|+..+.++++++..+.
T Consensus 133 ~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~ 203 (260)
T 2xtp_A 133 FGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIE 203 (260)
T ss_dssp HCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHH
Confidence 457788888 99998542 11101 1133344444322 123468888889988877653
No 53
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.31 E-value=4.3e-12 Score=102.29 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||........... ...++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~iilV~D~~~~~s~~~~~----~~~~~i~~~~~~~~piilV~NK~D 142 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAY--------YRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAELLLVGNKLD 142 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHH--------HHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHHHHHHHHH--------hcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECcc
Confidence 457899999976544433221 23478999999998754332110 012223332 346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+.. ....++ .|++++.|+++++..+
T Consensus 143 l~~~~~v--~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l 184 (192)
T 2il1_A 143 CETDREI--TRQQGEKFAQQI-TGMRFCEASAKDNFNVDEIFLKL 184 (192)
T ss_dssp GGGGCCS--CHHHHHHHHHTS-TTCEEEECBTTTTBSHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHhc-CCCeEEEEeCCCCCCHHHHHHHH
Confidence 9765432 234444444433 334555 7999999999988754
No 54
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.31 E-value=4.6e-12 Score=98.71 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=63.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-H---hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-I---AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-l---~~~~vivlNK~ 196 (257)
..+.++||||........... ....+.+++|+|+.......... .+...+.+ . ..|.++|+||+
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~ 119 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNY--------FRSGEGFLCVFSITEMESFAATA----DFREQILRVKEDENVPFLLVGNKS 119 (168)
T ss_dssp EEEEEEECCC---CHHHHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHCCTTSCEEEEEECG
T ss_pred EEEEEEECCCcchhHHHHHHH--------hhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEECc
Confidence 457899999976655444322 22468999999998654321110 01111212 1 35779999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+..+. ..++.....+..+ .+++ .|++++.|+++++..+
T Consensus 120 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 120 DLEDKRQV--SVEEAKNRADQWN--VNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp GGGGGCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTHHHHHHHH
T ss_pred cccccCcc--CHHHHHHHHHHcC--CeEEEeCCCCCCCHHHHHHHH
Confidence 99865432 2455556555544 3555 7899999999888754
No 55
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.31 E-value=7e-12 Score=99.63 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=90.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+... .......+ .+ ........+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~------~~~~~~~t-~~------------~~~~~~~~~~--------------- 62 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE------FVEDYEPT-KA------------DSYRKKVVLD--------------- 62 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC------CCCSCCTT-CC------------EEEEEEEEET---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC------CCCcCCCc-cc------------eEEEEEEEEC---------------
Confidence 44568999999999999999998531 01111111 00 0000011110
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HHH---h
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQI---A 186 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~ql---~ 186 (257)
.....+.|+||||..........+ ....+.+++|+|+.......... .+...+ ... .
T Consensus 63 -------~~~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~ 123 (187)
T 2a9k_A 63 -------GEEVQIDILDTAGQEDYAAIRDNY--------FRSGEGFLCVFSITEMESFAATA----DFREQILRVKEDEN 123 (187)
T ss_dssp -------TEEEEEEEEECCCTTCCHHHHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHCCTT
T ss_pred -------CEEEEEEEEECCCCcccHHHHHHH--------hccCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCC
Confidence 112457899999977655544322 12468999999998654321110 011111 221 3
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.|.++|+||+|+.+..+. ..+++....+..+ .+++ +|++++.++++++..+
T Consensus 124 ~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 124 VPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWN--VNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp CCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHH
T ss_pred CCEEEEEECccccccCcc--CHHHHHHHHHHcC--CeEEEeCCCCCCCHHHHHHHH
Confidence 567899999999865432 2455666665543 3555 7899999999888765
No 56
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.30 E-value=2.8e-11 Score=95.49 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=63.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-------HhhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------l~~~~vivl 193 (257)
..+.++||||........... ....+.+++|+|+.......... .+...+.+ ...|.++|+
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~p~i~v~ 123 (177)
T 1wms_A 56 VTMQIWDTAGQERFRSLRTPF--------YRGSDCCLLTFSVDDSQSFQNLS----NWKKEFIYYADVKEPESFPFVILG 123 (177)
T ss_dssp EEEEEEECCCCGGGHHHHGGG--------GTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred EEEEEEeCCCchhhhhhHHHH--------HhcCCEEEEEEECcCHHHHHHHH----HHHHHHHHHccccccCCCcEEEEE
Confidence 357899999976554443221 23468999999998754321110 01111211 234678999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
||+|+..... ..+.+....+... ..+++ .|++++.|+++++..+
T Consensus 124 nK~Dl~~~~~---~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 124 NKIDISERQV---STEEAQAWCRDNG-DYPYFETSAKDATNVAAAFEEA 168 (177)
T ss_dssp ECTTCSSCSS---CHHHHHHHHHHTT-CCCEEECCTTTCTTHHHHHHHH
T ss_pred ECCccccccc---CHHHHHHHHHhcC-CceEEEEeCCCCCCHHHHHHHH
Confidence 9999984332 2455555555333 33455 7999999999888765
No 57
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.29 E-value=7.2e-12 Score=98.99 Aligned_cols=151 Identities=21% Similarity=0.159 Sum_probs=85.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+.+.++++|.+|+|||||+++|+..... ....++. ..+... ....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-----~~~~~~~--~~~~~~-----------~~~~----------------- 51 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT-----EQEAGGI--TQHIGA-----------YQVT----------------- 51 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS-----CSSCCSS--STTCCC-----------CEEE-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc-----cCCCCce--eEeeeE-----------EEEE-----------------
Confidence 4667999999999999999999853110 0011111 000000 0000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
..+..+.++||||....... .......++.+++|+|+.......... ..........|.+
T Consensus 52 -------~~~~~~~l~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~~~~~~~-----~l~~~~~~~~p~i 111 (178)
T 2lkc_A 52 -------VNDKKITFLDTPGHEAFTTM--------RARGAQVTDIVILVVAADDGVMPQTVE-----AINHAKAANVPII 111 (178)
T ss_dssp -------ETTEEEEESCCCSSSSSSCS--------CCSSCCCCCEEEEEEETTCCCCHHHHH-----HHHHHGGGSCCEE
T ss_pred -------eCCceEEEEECCCCHHHHHH--------HHHHHhhCCEEEEEEECCCCCcHHHHH-----HHHHHHhCCCCEE
Confidence 12345679999996543211 112335678999999987632111100 1112222345789
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHhCC-------CCEEE-EeecCCcChhhhhcCc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEINS-------LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~~~-------~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+|+||+|+.+.. ...+...++.... ..+++ .|++++.|+++++..+
T Consensus 112 lv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 112 VAINKMDKPEAN-----PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp EEEETTTSSCSC-----HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred EEEECccCCcCC-----HHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHH
Confidence 999999998743 2344444433221 13555 7899999999888765
No 58
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.29 E-value=1.5e-11 Score=97.31 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=66.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||.......... ....++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 61 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~p~i~v~nK~D 128 (181)
T 2efe_B 61 VKFEIWDTAGQERYHSLAPM--------YYRGAAAAIIVFDVTNQASFERAK----KWVQELQAQGNPNMVMALAGNKSD 128 (181)
T ss_dssp EEEEEEECCCSGGGGGGTHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCChhhhhhhHH--------HhccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECCc
Confidence 45789999996433222111 123468999999998654321110 012222222 345788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCCC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDATV 247 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~~ 247 (257)
+.+..+. ..+.+....+..+ .+++ .|++++.++++++..+......
T Consensus 129 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 129 LLDARKV--TAEDAQTYAQENG--LFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CTTTCCS--CHHHHHHHHHHTT--CEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred ccccccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9865432 2345555554432 4555 7999999999999887554443
No 59
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.29 E-value=2.6e-12 Score=100.47 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||.......... ....++.+++|+|+.......... . +...+.+. ..+.++|+||+|
T Consensus 52 ~~~~~~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~-~---~~~~~~~~~~~~~piilv~nK~D 119 (170)
T 1ek0_A 52 VKFEIWDTAGQERFASLAPX--------YYRNAQAALVVYDVTKPQSFIKAR-H---WVKELHEQASKDIIIALVGNKID 119 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHH--------HHTTCSEEEEEEETTCHHHHHHHH-H---HHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEECCCChhhhhhhhh--------hhccCcEEEEEEecCChHHHHHHH-H---HHHHHHHhcCCCCcEEEEEECCC
Confidence 45789999996543322221 123468999999998754321110 0 11112111 345678999999
Q ss_pred CCCcCCCc-chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 198 LVSPERSG-DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~-~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+.+..... -..+......+..+ .+++ .|++++.++++++..+..
T Consensus 120 l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 120 XLQEGGERKVAREEGEKLAEEKG--LLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp GGGSSCCCCSCHHHHHHHHHHHT--CEEEECCTTTCTTHHHHHHHHHT
T ss_pred ccccccccCCCHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHH
Confidence 98653211 11233333333332 3555 789999999999877643
No 60
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.28 E-value=2.1e-11 Score=96.37 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=85.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|.+|+|||||+++|+.. +.. ....++. +.+.. .....+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~----~~~-~~~~~~~--~~~~~-----------~~~~~~~--------------- 54 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN----TFS-GSYITTI--GVDFK-----------IRTVEIN--------------- 54 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC----C----CCTTTB--SEEEE-----------EEEEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC----CCC-CccCCCc--eeEEE-----------EEEEEEC---------------
Confidence 4567899999999999999999842 111 1112221 11100 0011111
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----- 185 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----- 185 (257)
.....+.++||||........ ......++.+++|+|+......... ...+.++
T Consensus 55 -------~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~-------~~~~~~~~~~~~ 112 (181)
T 3tw8_B 55 -------GEKVKLQIWDTAGQERFRTIT--------STYYRGTHGVIVVYDVTSAESFVNV-------KRWLHEINQNCD 112 (181)
T ss_dssp -------TEEEEEEEEEETTGGGCSSCC--------GGGGTTCSEEEEEEETTCHHHHHHH-------HHHHHHHHHHCT
T ss_pred -------CEEEEEEEEcCCCchhhhhhH--------HHHhccCCEEEEEEECCCHHHHHHH-------HHHHHHHHHhCC
Confidence 112457899999943221111 1123456899999999875432221 1122222
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..|.++|+||+|+.+.... ............+ .+++ +|++++.|+++++..+
T Consensus 113 ~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 113 DVCRILVGNKNDDPERKVV--ETEDAYKFAGQMG--IQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp TSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CCEEECBTTTTBSHHHHHHHH
T ss_pred CCCEEEEEECCCCchhccc--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHH
Confidence 2456899999998865432 2234444444443 2444 7999999999988765
No 61
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.28 E-value=3.3e-11 Score=94.31 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.++||||......... . ....++.+++|+|+......... . .+...+.+ -..|.++|+||+|
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~-----~---~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~piilv~nK~D 122 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGP-----I---YYRDSNGAILVYDITDEDSFQKV-K---NWVKELRKMLGNEICLCIVGNKID 122 (170)
T ss_dssp EEEEEEECCCC-------C-----C---SSTTCSEEEEEEETTCHHHHHHH-H---HHHHHHHHHHGGGSEEEEEEECGG
T ss_pred EEEEEEECCCcHhhhhhHH-----H---HhccCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCeEEEEEECcc
Confidence 3577899999654332221 1 12357899999999875432111 0 01112222 2346689999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++.+. ..+......+..+ .+++ .|++++.|+++++..+
T Consensus 123 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 123 LEKERHV--SIQEAESYAESVG--AKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT--CEEEEEBTTTTBSHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHH
Confidence 9875432 2345555555543 4555 8999999999988765
No 62
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.28 E-value=2.5e-12 Score=118.61 Aligned_cols=162 Identities=18% Similarity=0.126 Sum_probs=93.2
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEE-----ecCCCcccccchhhhhcCCCCceeeeeeecCCCceeec
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVI-----LNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT 102 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii-----~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (257)
...+...++++|..|+|||||+++|+.... .+++ ..+.|.+++.... ...
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~---~~~~d~~~~e~~~GiTi~~~~~-------------~~~--------- 69 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIAS---TSAHDKLPESQKRGITIDIGFS-------------AFK--------- 69 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------CCC-------------EEE---------
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCc---ccccccccccccCccEEecceE-------------EEE---------
Confidence 334556799999999999999999985320 0111 1111211100000 000
Q ss_pred cchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
..+..+.|+||||..+ +... .......+|.+++|+|+.......... ....+
T Consensus 70 ---------------~~~~~i~iiDtPGh~~---~~~~-----~~~~~~~aD~~ilVvda~~g~~~qt~e-----~l~~~ 121 (482)
T 1wb1_A 70 ---------------LENYRITLVDAPGHAD---LIRA-----VVSAADIIDLALIVVDAKEGPKTQTGE-----HMLIL 121 (482)
T ss_dssp ---------------ETTEEEEECCCSSHHH---HHHH-----HHHHTTSCCEEEEEEETTTCSCHHHHH-----HHHHH
T ss_pred ---------------ECCEEEEEEECCChHH---HHHH-----HHHHHhhCCEEEEEEecCCCccHHHHH-----HHHHH
Confidence 1234688999999632 2211 112234579999999998643221111 12344
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh--CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI--NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~--~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+++.+.++++||+|+.+++......+++...++.. .+..+++ .|++++.|+++|++.+.
T Consensus 122 ~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~ 184 (482)
T 1wb1_A 122 DHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLII 184 (482)
T ss_dssp HHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHH
T ss_pred HHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHH
Confidence 556778899999999997543323345555656543 1234555 79999999998887653
No 63
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.28 E-value=1.1e-11 Score=98.79 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=85.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.. +......-.|. ... ...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~----~~~~~~~t~~~----~~~-------------~~~----------------- 61 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN----EVVHTSPTIGS----NVE-------------EIV----------------- 61 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT----SCEEEECCSSS----SCE-------------EEE-----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC----CCCccCCcCce----eeE-------------EEE-----------------
Confidence 4456899999999999999999953 22222222221 100 001
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHH---H
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQ---I 185 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~q---l 185 (257)
..+..+.++||||......... .....++.+++|+|+...... .... +...... .
T Consensus 62 -------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~D~~~~~s~~~~~~~-----~~~~~~~~~~~ 121 (181)
T 2h17_A 62 -------INNTRFLMWDIGGQESLRSSWN--------TYYTNTEFVIVVVDSTDRERISVTREE-----LYKMLAHEDLR 121 (181)
T ss_dssp -------ETTEEEEEEEESSSGGGTCGGG--------GGGTTCCEEEEEEETTCTTTHHHHHHH-----HHHHHTCGGGT
T ss_pred -------ECCEEEEEEECCCCHhHHHHHH--------HHhccCCEEEEEEECCCHHHHHHHHHH-----HHHHHhChhhC
Confidence 1234578999999754322211 112357899999999864221 1110 1111111 2
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
..+.++|+||+|+.+... .+++...+... .....++ .|++++.|+++++..+
T Consensus 122 ~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 122 KAGLLIFANKQDVKECMT----VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCeEEEEEECCCcccCCC----HHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 346788999999987533 34444444221 1222455 7899999999988654
No 64
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.28 E-value=6.9e-12 Score=100.12 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=86.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.. + ......+.+... ....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~----~----~~~~~~t~~~~~-------------~~~~----------------- 58 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE----D----VDTISPTLGFNI-------------KTLE----------------- 58 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC----C----CSSCCCCSSEEE-------------EEEE-----------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC----C----CCcccccCccce-------------EEEE-----------------
Confidence 3456899999999999999999842 1 111111011110 0001
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~ 187 (257)
..+..+.++||||........ . .....++.+++|+|+........... . +...... ...
T Consensus 59 -------~~~~~~~~~Dt~G~~~~~~~~-----~---~~~~~~d~ii~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~ 120 (186)
T 1ksh_A 59 -------HRGFKLNIWDVGGQKSLRSYW-----R---NYFESTDGLIWVVDSADRQRMQDCQR-E--LQSLLVEERLAGA 120 (186)
T ss_dssp -------ETTEEEEEEEECCSHHHHTTG-----G---GGCTTCSEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTC
T ss_pred -------ECCEEEEEEECCCCHhHHHHH-----H---HHhcCCCEEEEEEECcCHHHHHHHHH-H--HHHHHhChhcCCC
Confidence 123457899999974322111 1 12345789999999986432111000 0 1111111 235
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|+||+|+.+... .+++...+... ....+++ .|++++.++++++..+.
T Consensus 121 piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 121 TLLIFANKQDLPGALS----CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp EEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cEEEEEeCccCCCCCC----HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 6789999999987643 34454444321 2233555 78999999998887653
No 65
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.28 E-value=4.9e-12 Score=114.06 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=67.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHHhh-cCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~ 198 (257)
..+.|+||||......... .....+|.+++|+|+.... ...... ....+.++.. +.++++||+|+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~--------~~~~~~D~~ilVvda~~~~~~~qt~~-----~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATML--------SGAALMDGAILVVAANEPFPQPQTRE-----HFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHH--------HHHTTCSEEEEEEETTSCSSCHHHHH-----HHHHHHHHTCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHH--------HHHhhCCEEEEEEECCCCCCcHHHHH-----HHHHHHHcCCCCEEEEEECccc
Confidence 4688999999543322221 1234579999999998753 111110 1223344444 56889999999
Q ss_pred CCcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+.++.....+++.+.++... ...+++ .|++++.++++|++.+.
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 142 VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIE 187 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHH
Confidence 987543233444555444332 234555 79999999999988774
No 66
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.27 E-value=1.9e-11 Score=99.02 Aligned_cols=106 Identities=11% Similarity=0.118 Sum_probs=64.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||.......... ....++.+++|+|+...... .... .+...+... ..+.++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~piilv~nK~D 124 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTA--------YYRGAMGFILMYDITNEESF-NAVQ---DWSTQIKTYSWDNAQVLLVGNKCD 124 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHT--------TGGGCSEEEEEEETTCHHHH-HHHH---HHHHHHHHHSCSSCEEEEEEECTT
T ss_pred EEEEEEECCCchhhcchHHH--------hhcCCCEEEEEEECcCHHHH-HHHH---HHHHHHHHhcCCCCCEEEEEECcc
Confidence 45789999998655443322 12357899999999865432 1110 011222221 346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+....+.+..+ .+++ .|++++.++++++..+.
T Consensus 125 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 125 MEDERVV--SSERGRQLADHLG--FEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp CTTSCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHHHHHHH
T ss_pred cCccccc--CHHHHHHHHHHCC--CeEEEEECCCCCCHHHHHHHHH
Confidence 9875432 2344444444443 3555 78999999988877653
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.27 E-value=4e-11 Score=92.96 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||||........... ....+.+++|+|+.......... .+...+.+. ..|.++|+||+
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~p~iiv~nK~ 118 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQY--------MRTGEGFLCVFAINNTKSFEDIH----QYREQIKRVKDSDDVPMVLVGNKS 118 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEEECCCchhhhHHHHHh--------hccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEEch
Confidence 457899999976654443321 12468899999998654321110 011222222 35779999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
|+.+.... .+...+..+..+ ..-+..|++.+.++++++..+
T Consensus 119 Dl~~~~~~---~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 119 DLAARTVE---SRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp TCSCCCSC---HHHHHHHHHHHT-CCEEEECTTTCTTHHHHHHHH
T ss_pred hhhhcccC---HHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHH
Confidence 99874332 344444444443 223348999999999888755
No 68
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=7e-12 Score=112.82 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=33.3
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhc
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~ 239 (257)
...|.++|+||+|+... ..+..+.+.+... .++++ +|+..+.++.+++.
T Consensus 213 ~~kP~i~v~NK~D~~~~----~~l~~l~~~~~~~--~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 213 VNKPMVIAANKADAASD----EQIKRLVREEEKR--GYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HHSCEEEEEECGGGSCH----HHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCSS
T ss_pred cCCCEEEEEeCccccch----HHHHHHHHHHhhc--CCcEEEEeccchhhHHHHHh
Confidence 35799999999998732 2355555544432 34554 89999989987765
No 69
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=2e-11 Score=96.63 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.++||||......... .....++.+++|+|+........ .. .+...+.+ ...|.++|+||+|
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~piilv~nK~D 127 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTH--------AYYRDAHALLLLYDVTNKASFDN-IQ---AWLTEIHEYAQHDVALMLLGNKVD 127 (180)
T ss_dssp EEEEEEECCCC----------------CCGGGCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCEEEEEEECCS
T ss_pred EEEEEEeCCCcHHHHHHHH--------HHccCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhCCCCCcEEEEEECcc
Confidence 4578999999654333221 12345789999999987543211 10 01122222 2346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+......+..+ .+++ .|++++.++++++..+.
T Consensus 128 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 128 SAHERVV--KREDGEKLAKEYG--LPFMETSAKTGLNVDLAFTAIA 169 (180)
T ss_dssp TTSCCCS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred cCccccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 9875432 2334444444443 2444 79999999999887653
No 70
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.27 E-value=1.7e-11 Score=100.15 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=71.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.... ....+. ...+. . ...+.+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~------~~~~~~--~~~~~------------~-~~~~~~-------------- 50 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY------RDTQTS--ITDSS------------A-IYKVNN-------------- 50 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC------CCBCCC--CSCEE------------E-EEECSS--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc------ccccCC--cceee------------E-EEEecC--------------
Confidence 345789999999999999999985310 000111 00000 0 011110
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHH-HHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-----
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----- 184 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----- 184 (257)
..+..+.++||||...... +...+ ...++.+++|+|+............. +...+..
T Consensus 51 -------~~~~~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~ 113 (214)
T 2fh5_B 51 -------NRGNSLTLIDLPGHESLRFQLLDRF--------KSSARAVVFVVDSAAFQREVKDVAEF--LYQVLIDSMALK 113 (214)
T ss_dssp -------TTCCEEEEEECCCCHHHHHHHHHHH--------GGGEEEEEEEEETTTHHHHHHHHHHH--HHHHHHHHHTST
T ss_pred -------CCccEEEEEECCCChhHHHHHHHHH--------HhhCCEEEEEEECCCcCHHHHHHHHH--HHHHHhhhhhcc
Confidence 1135688999999764433 22211 23478999999998743322211000 1111111
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHH
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIH 216 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~ 216 (257)
...|.++|.||+|+.+........+.+.+.+.
T Consensus 114 ~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 114 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp TCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 13467899999999877553333344444443
No 71
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.27 E-value=1e-11 Score=97.92 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=88.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|.+|+|||||+++|+.... ......+ .+.+.. . ....+.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~~~----------~-~~~~~~--------------- 60 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF------MADCPHT-IGVEFG----------T-RIIEVS--------------- 60 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC------CSSCTTS-CCCCEE----------E-EEEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC------CCCCCCc-cceEEE----------E-EEEEEC---------------
Confidence 455689999999999999999985311 0000110 111100 0 001110
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~ 187 (257)
.....+.|+||||........... ...++.+++|+|+......... . .+...+.+ ...
T Consensus 61 -------~~~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~ 121 (179)
T 1z0f_A 61 -------GQKIKLQIWDTAGQERFRAVTRSY--------YRGAAGALMVYDITRRSTYNHL-S---SWLTDARNLTNPNT 121 (179)
T ss_dssp -------TEEEEEEEEECTTGGGTCHHHHHH--------HHTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTC
T ss_pred -------CeEEEEEEEECCCChHhhhhHHHH--------hccCCEEEEEEeCcCHHHHHHH-H---HHHHHHHHhcCCCC
Confidence 112457899999965433332211 2346899999999876432111 0 01112222 234
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.++|+||+|+.+..+. ..+++.+..+..+ .+++ .|++++.++++++..+
T Consensus 122 piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 122 VIILIGNKADLEAQRDV--TYEEAKQFAEENG--LLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp EEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHH
T ss_pred cEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 56899999999765432 2455556555543 4555 7999999999888654
No 72
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.27 E-value=1.9e-11 Score=98.47 Aligned_cols=149 Identities=19% Similarity=0.152 Sum_probs=85.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++++|.+|+|||||+++|..... . ....+.+.+. ....
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~----~----~~~~t~~~~~-------------~~~~------------------- 63 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRL----A----TLQPTWHPTS-------------EELA------------------- 63 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCC----C----CCCCCCSCEE-------------EEEE-------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----C----ccccCCCCCe-------------EEEE-------------------
Confidence 4689999999999999999985311 1 1111011110 0011
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH---HHhhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---ql~~~~ 189 (257)
..+..+.++||||......... .. ...++.+++|+|+........... . +..... ....|.
T Consensus 64 -----~~~~~~~i~Dt~G~~~~~~~~~-----~~---~~~~d~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~pi 127 (190)
T 1m2o_B 64 -----IGNIKFTTFDLGGHIQARRLWK-----DY---FPEVNGIVFLVDAADPERFDEARV-E--LDALFNIAELKDVPF 127 (190)
T ss_dssp -----ETTEEEEEEECCCSGGGTTSGG-----GG---CTTCCEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTCCE
T ss_pred -----ECCEEEEEEECCCCHHHHHHHH-----HH---HhcCCEEEEEEECCChHHHHHHHH-H--HHHHHcchhhcCCCE
Confidence 1224577999999754322211 11 235789999999986532111000 0 111111 123577
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhC----------CCCEEE-EeecCCcChhhhhcCc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEIN----------SLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~----------~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
++|.||+|+.+... .+++.+.++... ...+++ .|++++.|+++++..+
T Consensus 128 ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 186 (190)
T 1m2o_B 128 VILGNKIDAPNAVS----EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186 (190)
T ss_dssp EEEEECTTSTTCCC----HHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred EEEEECCCCcCCCC----HHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHH
Confidence 88999999986322 455555544321 233455 7999999999988754
No 73
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.27 E-value=1.5e-11 Score=98.54 Aligned_cols=105 Identities=10% Similarity=0.125 Sum_probs=63.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||......... .....++.+++|+|+........ .. .+...+.+. ..+.++|+||+|
T Consensus 71 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~piilv~nK~D 138 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTITT--------AYYRGAMGFLLMYDIANQESFAA-VQ---DWATQIKTYSWDNAQVILVGNKCD 138 (189)
T ss_dssp EEEEEEECCSCCSSCCSGG--------GGGTTCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCcHHHhhhHH--------HhccCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCCEEEEEECcc
Confidence 4578999999654322111 12235789999999976543211 10 012222222 356789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+..+ .+++ .|++.+.|+++++..+
T Consensus 139 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 139 LEDERVV--PAEDGRRLADDLG--FEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHH
T ss_pred cccccCC--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHH
Confidence 9865432 2344455555443 3555 7999999999988765
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=6e-12 Score=98.52 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
..+.++||||........... ....+.+++|+|+........ .. .+...+.+. ..|.++|+||
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~-~~---~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVYSITSRQSLEE-LK---PIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEEECCSCSSCHHHHHHH--------HHHCSEEEEEEETTCHHHHHT-TH---HHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEEECCCchhhHHHHHHh--------cccCCEEEEEEECcCHHHHHH-HH---HHHHHHHHHhCCCCCCCEEEEEEc
Confidence 457899999987655443321 123689999999986543211 10 011222222 3577899999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+|+.+..+.. ........+..+ .+++ .|++++.|+++++..+..
T Consensus 119 ~Dl~~~~~v~--~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 163 (172)
T 2erx_A 119 CDESPSREVQ--SSEAEALARTWK--CAFMETSAKLNHNVKELFQELLN 163 (172)
T ss_dssp GGGGGGCCSC--HHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccccccC--HHHHHHHHHHhC--CeEEEecCCCCcCHHHHHHHHHH
Confidence 9998754431 223333333332 3555 799999999999887643
No 75
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.26 E-value=6.8e-12 Score=98.16 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=61.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||.......... .....+.+++|+|+.......... .+...+.+. ..+.++|.||+|
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~l~~~~~~~~~iilv~nK~D 122 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPM--------YYRGSAAAIIVYDITKEETFSTLK----NWVRELRQHGPPSIVVAIAGNKCD 122 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTSEEEEEEECTT
T ss_pred EEEEEEcCCCchhhhcccHh--------hCcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhCCCCCcEEEEEECCc
Confidence 45789999997543222211 123468999999998754322110 012222332 234567779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+..+ .+++ .|++++.++++++..+
T Consensus 123 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 123 LTDVREV--MERDAKDYADSIH--AIFVETSAKNAININELFIEI 163 (170)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHHHHHHHH
Confidence 9875442 1233444444433 4555 7999999999988765
No 76
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.26 E-value=7.6e-12 Score=111.02 Aligned_cols=160 Identities=20% Similarity=0.196 Sum_probs=89.1
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+.++++|++|+|||||+|+|+.. . ..+...++.+.+.. .. ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~----~-~~~~~~~~~t~~~~------------~~-~~~---------------- 210 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA----K-PEIASYPFTTRGIN------------VG-QFE---------------- 210 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS----C-CEEECCTTCSSCEE------------EE-EEE----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC----C-CccCCCCCeeecee------------EE-EEE----------------
Confidence 45678999999999999999999853 2 12233333211111 00 000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHH----HHHhcccccccccceeeeeEEEEEeccchHH-HHhhhccCCChhHHHHH
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLF-QIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~----~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~-~~~~~~~~~~~~~~~~q 184 (257)
..+..+.++||||..+... ..+.. .........+.+++|+|++.... ...... .+...+.+
T Consensus 211 --------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~~~~~~~~ad~illV~D~s~~~~~~~~~~~---~~~~~i~~ 276 (357)
T 2e87_A 211 --------DGYFRYQIIDTPGLLDRPISERNEIEKQ---AILALRYLGNLIIYIFDPSEHCGFPLEEQI---HLFEEVHG 276 (357)
T ss_dssp --------ETTEEEEEEECTTTSSSCSTTSCHHHHH---HHHGGGGTCSEEEEEECTTCTTSSCHHHHH---HHHHHHHH
T ss_pred --------ecCceEEEEeCCCccccchhhhhHHHHH---HHHHHHhcCCEEEEEEeCCccccCCHHHHH---HHHHHHHH
Confidence 1234578999999754311 00000 00011124688999999875321 000000 01111222
Q ss_pred -H-hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 185 -I-AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 185 -l-~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
. ..+.++|+||+|+....+ ++.....++..+. .-+.+|++++.|+++++..+.
T Consensus 277 ~~~~~piilV~NK~Dl~~~~~----~~~~~~~~~~~~~-~~~~iSA~~g~gi~~l~~~i~ 331 (357)
T 2e87_A 277 EFKDLPFLVVINKIDVADEEN----IKRLEKFVKEKGL-NPIKISALKGTGIDLVKEEII 331 (357)
T ss_dssp HTTTSCEEEEECCTTTCCHHH----HHHHHHHHHHTTC-CCEECBTTTTBTHHHHHHHHH
T ss_pred hcCCCCEEEEEECcccCChHH----HHHHHHHHHhcCC-CeEEEeCCCCcCHHHHHHHHH
Confidence 2 567889999999987532 3445555544332 224489999999999987664
No 77
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.26 E-value=6.8e-11 Score=95.80 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChh-HHHHH------HhhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQ------IAFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~q------l~~~~vivl 193 (257)
..+.|+||||........ ......++.+++|+|+.......... .+. ..... ...|.++|+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~piilv~ 124 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLG--------VAFYRGADCCVLVFDVTAPNTFKTLD----SWRDEFLIQASPRDPENFPFVVLG 124 (207)
T ss_dssp EEEEEEEECSSGGGSCSC--------CGGGTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCCSSGGGSCEEEEE
T ss_pred EEEEEEeCCCcHHHHHhH--------HHHHhCCcEEEEEEECCCHHHHHHHH----HHHHHHHHhcccccCCCCcEEEEE
Confidence 457899999954321111 11223578999999998654321110 011 11111 244779999
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
||+|+..... ..+....+.+.. ...+++ +|++++.|+++++..+.
T Consensus 125 nK~Dl~~~~~---~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (207)
T 1vg8_A 125 NKIDLENRQV---ATKRAQAWCYSK-NNIPYFETSAKEAINVEQAFQTIA 170 (207)
T ss_dssp ECTTSSCCCS---CHHHHHHHHHHT-TSCCEEECBTTTTBSHHHHHHHHH
T ss_pred ECCCCccccc---CHHHHHHHHHhc-CCceEEEEeCCCCCCHHHHHHHHH
Confidence 9999985432 234444444433 334455 79999999998887663
No 78
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.26 E-value=1.4e-11 Score=112.22 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=63.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhh--hccCCChhHHHHHHhhc-CEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~ql~~~-~vivlNK~ 196 (257)
+..+.|+||||..+..... ......+|.+++|+|+......... ..+..........++.+ .++++||+
T Consensus 94 ~~~~~iiDTPGh~~f~~~~--------~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNM--------IGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKM 165 (439)
T ss_pred CeEEEEEECCChHHHHHHH--------HhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecC
Confidence 4578999999964332221 1234468999999999875421000 00000012233445666 67899999
Q ss_pred CCCCcCC----CcchHHHHHHHHHHhCC----CCEEE-EeecCCcChhhhhc
Q 025133 197 DLVSPER----SGDSLDELEKEIHEINS----LAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 197 D~~~~~~----~~~~l~~~~~~l~~~~~----~a~i~-~s~~~~~~~~~l~~ 239 (257)
|+.+.+. ..+..+++...++++.- ..+++ +|++++.|+.++.+
T Consensus 166 Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 166 DDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9975321 11223344444444331 34555 89999999988654
No 79
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.26 E-value=3.4e-12 Score=109.17 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=38.5
Q ss_pred eeeeeEEEEEeccc-hHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-Eee
Q 025133 151 VRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSV 228 (257)
Q Consensus 151 ~~~~~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~ 228 (257)
.+++.+++++|+.. .....+.. +...+.. ..|.++|+||+|+++.++.....+.+.+.+... ..+++ .|+
T Consensus 114 ~r~~~~l~~i~~~~~~~~~~d~~-----~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~--~i~v~~~sa 185 (274)
T 3t5d_A 114 NRVQCCLYFIAPSGHGLKPLDIE-----FMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH--KIKIYEFPE 185 (274)
T ss_dssp CCCCEEEEEECSCCSSCCHHHHH-----HHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHT--TCCCCCC--
T ss_pred CceeEEEEEecCCCCCCCHHHHH-----HHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHc--CCeEEcCCC
Confidence 45678888887664 22222211 1122222 568899999999987655322333444444432 23344 677
Q ss_pred cCCcChhhhhcC
Q 025133 229 RCQVDLSEVLNC 240 (257)
Q Consensus 229 ~~~~~~~~l~~~ 240 (257)
..+.++++++..
T Consensus 186 ~~~~~~~~l~~~ 197 (274)
T 3t5d_A 186 TDDEEENKLVKK 197 (274)
T ss_dssp ---------CHH
T ss_pred CCChhHHHHHHH
Confidence 777777665443
No 80
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.26 E-value=6.3e-12 Score=98.23 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=62.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||.......... ....++.+++|+|+.......... .+...+.+. ..+.++|.||+|
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~iilv~nK~D 122 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPM--------YYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHhhhhhHH--------hccCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCcEEEEEECcc
Confidence 45789999996543322211 123468999999998654321110 011122222 234566779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+.++.+. ..++.....+.. ..+++ .|++++.++++++..+..
T Consensus 123 l~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 123 LANKRAV--DFQEAQSYADDN--SLLFMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp GGGGCCS--CHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHH
T ss_pred Ccccccc--CHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9765432 234444544443 24555 799999999999877643
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.26 E-value=7.5e-11 Score=94.43 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=65.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
..+.++||||........... ...++.+++|+|+........... ...+...+.++ ..|.++|.||
T Consensus 74 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~D~~~~~~~~~~~s-~~~l~~~l~~~~~~~~~~piilv~NK 144 (198)
T 3t1o_A 74 TRFHLYTVPGQVFYNASRKLI--------LRGVDGIVFVADSAPNRLRANAES-MRNMRENLAEYGLTLDDVPIVIQVNK 144 (198)
T ss_dssp EEEEEEECCSCCSCSHHHHHH--------TTTCCEEEEEEECCGGGHHHHHHH-HHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred eEEEEEeCCChHHHHHHHHHH--------HhcCCEEEEEEECCcchhhHhHHH-HHHHHHHHHhhccccCCCCEEEEEEc
Confidence 457899999976554443322 234689999999984322111000 00011222332 4577889999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
+|+.+... .+++.+.++..+-..-+..|++++.|+++++..+
T Consensus 145 ~Dl~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 145 RDLPDALP----VEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEV 186 (198)
T ss_dssp TTSTTCCC----HHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHH
T ss_pred hhcccccC----HHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHH
Confidence 99987633 5666666655432123347999999999988765
No 82
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.26 E-value=2.1e-11 Score=95.45 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=59.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.++||||........... . ....+.+++|+|+........ .. .+...+.+. ..|.++|.||+
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~----~---~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDH----C---LQTGDAFLIVFSVTDRRSFSK-VP---ETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEECCCCC--------CH----H---HHHCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEECCCccccchhhhhh----h---hccCCEEEEEEECCChHHHHH-HH---HHHHHHHhcccCCCCCEEEEeeCc
Confidence 457799999986543322110 1 123689999999987433211 10 011111111 35778999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+..+. ..+......+..+ ++++ .|++++.++++++...
T Consensus 120 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 120 DLARSREV--SLEEGRHLAGTLS--CKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp TCGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHHHHHHH
T ss_pred chhhcccC--CHHHHHHHHHHcC--CcEEEecCccCCCHHHHHHHH
Confidence 99865432 2344444444443 3555 7999999999988654
No 83
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.26 E-value=4e-11 Score=96.30 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HHHhhcCEEEEeCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQIAFADVVILNKVDLV 199 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~ql~~~~vivlNK~D~~ 199 (257)
..+.|+||||.......... ....++.+++|+|+.......... .+...+ .....+.++|+||+| .
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~D~~~~~s~~~~~----~~~~~i~~~~~~piilv~NK~D-~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPL--------YYRGATCAIVVFDISNSNTLDRAK----TWVNQLKISSNYIIILVANKID-K 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHH--------HHTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCCEEEEEEECTT-C
T ss_pred eEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHHHHHH----HHHHHHHhhCCCcEEEEEECCC-c
Confidence 57889999995433222211 123468999999998764322110 011111 112357799999999 3
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...+ ...+++..+++..+ .+++ .|++.+.++++++..+
T Consensus 160 ~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l 198 (208)
T 3clv_A 160 NKFQ--VDILEVQKYAQDNN--LLFIQTSAKTGTNIKNIFYML 198 (208)
T ss_dssp C-CC--SCHHHHHHHHHHTT--CEEEEECTTTCTTHHHHHHHH
T ss_pred cccc--CCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHH
Confidence 3222 23566667666643 3555 8999999999988765
No 84
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.26 E-value=1.3e-11 Score=99.44 Aligned_cols=111 Identities=17% Similarity=0.124 Sum_probs=67.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... .....++.+++|+|+........... .+...+.+. ..|.++|.||+|+
T Consensus 71 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 71 FILHLWDTAGQEEYDRLRP--------LSYADSDVVLLCFAVNNRTSFDNIST---KWEPEIKHYIDTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTSEEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHHhH--------hhccCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 3467999999543221111 11235789999999987644322100 122223322 3577899999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.+........+......+..+-..-+..|++++.|+++++..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 183 (194)
T 3reg_A 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183 (194)
T ss_dssp CCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHH
T ss_pred ccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHH
Confidence 86433223355666666665433234489999999999887663
No 85
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.25 E-value=3.1e-11 Score=94.35 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||........ .......+.+++|+|+........ .. .+...+.+. ..|.++|+||+|
T Consensus 52 ~~~~l~D~~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~piilv~nK~D 119 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTIT--------TAYYRGAMGIILVYDITDERTFTN-IK---QWFKTVNEHANDEAQLLLVGNKSD 119 (170)
T ss_dssp EEEEEECCTTGGGTSCCC--------HHHHTTEEEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCChhhhhhH--------HHHhccCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCcEEEEEECcc
Confidence 357899999953221111 111235789999999986543211 10 012222222 346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+..... ..+......+..+ .+++ .|++++.++++++..+.
T Consensus 120 l~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 120 METRVV---TADQGEALAKELG--IPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp CTTCCS---CHHHHHHHHHHHT--CCEEECBTTTTBSHHHHHHHHH
T ss_pred CCcCcc---CHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHH
Confidence 954332 2344444444443 2444 79999999999887653
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.25 E-value=3.8e-11 Score=93.50 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=62.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~ 196 (257)
+..+.++||||........... ...++.+++|+|+........... . +...... -..|.++|+||+
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~piilv~nK~ 111 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRERVNEARE-E--LMRMLAEDELRDAVLLVFANKQ 111 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHH--------TTTCSEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTCEEEEEEECT
T ss_pred CEEEEEEEcCCChhhHHHHHHH--------hccCCEEEEEEECCCHHHHHHHHH-H--HHHHHhchhhcCCeEEEEEECc
Confidence 3568899999986554433221 235789999999986532111000 0 1111111 135678999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+... ...+...+... ....+++ .|++++.|+++++..+.
T Consensus 112 Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 112 DLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp TSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CCcCCCC----HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHH
Confidence 9987543 34444433221 1223455 78999999999887653
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.25 E-value=1e-11 Score=97.29 Aligned_cols=148 Identities=20% Similarity=0.140 Sum_probs=85.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+++|...... ...+. .+.... ...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~t--~~~~~~-------------~~~------------------ 47 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV------TTIPT--IGFNVE-------------TVT------------------ 47 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC------CCCCC--SSEEEE-------------EEE------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC------CcCCc--CccceE-------------EEE------------------
Confidence 356899999999999999999853110 11111 111100 001
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHHHH---Hh
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQ---IA 186 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~q---l~ 186 (257)
..+..+.++||||......... .....++.+++|+|+..... ..... +...... ..
T Consensus 48 ------~~~~~~~~~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~~~-----~~~~~~~~~~~~ 108 (171)
T 1upt_A 48 ------YKNLKFQVWDLGGLTSIRPYWR--------CYYSNTDAVIYVVDSCDRDRIGISKSE-----LVAMLEEEELRK 108 (171)
T ss_dssp ------ETTEEEEEEEECCCGGGGGGGG--------GGCTTCSEEEEEEETTCCTTHHHHHHH-----HHHHHTCGGGTT
T ss_pred ------ECCEEEEEEECCCChhhhHHHH--------HHhccCCEEEEEEECCCHHHHHHHHHH-----HHHHHhchhhCC
Confidence 1134578999999754322211 11235789999999986421 11110 1111111 24
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.|.++|+||+|+.+... ..++...+... ....+++ .|++++.++++++..+
T Consensus 109 ~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 109 AILVVFANKQDMEQAMT----SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp CEEEEEEECTTSTTCCC----HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CEEEEEEECCCCcCCCC----HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHH
Confidence 56789999999987643 34444444221 1223455 7899999999888765
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.25 E-value=9.8e-12 Score=99.77 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=85.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++|+|.+|+|||||+++|+..... .....+.+.+.. .+
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~---------------~~----------------- 62 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFN-------EDMIPTVGFNMR---------------KI----------------- 62 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-------CSCCCCCSEEEE---------------EE-----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCC-------CccCCCCceeEE---------------EE-----------------
Confidence 346899999999999999999853110 000100111100 00
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~ 188 (257)
...+..+.|+||||.......... ....++.+++|+|+........... . +...... ...+
T Consensus 63 -----~~~~~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~D~~~~~s~~~~~~-~--~~~~~~~~~~~~~p 126 (188)
T 1zd9_A 63 -----TKGNVTIKLWDIGGQPRFRSMWER--------YCRGVSAIVYMVDAADQEKIEASKN-E--LHNLLDKPQLQGIP 126 (188)
T ss_dssp -----EETTEEEEEEEECCSHHHHTTHHH--------HHTTCSEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTCC
T ss_pred -----EeCCEEEEEEECCCCHhHHHHHHH--------HHccCCEEEEEEECCCHHHHHHHHH-H--HHHHHhCcccCCCC
Confidence 022456789999996432222211 1234789999999976432111000 0 1111111 2456
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCccC
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
.++|+||+|+.+..+ ..++...+... ....+++ +|++++.|+++++..+..
T Consensus 127 iilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 181 (188)
T 1zd9_A 127 VLVLGNKRDLPGALD----EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181 (188)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred EEEEEECCCCccCCC----HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHH
Confidence 789999999987543 23343333221 1233455 789999999999877643
No 89
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.25 E-value=9.3e-12 Score=100.05 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlN 194 (257)
..+.|+||||........... ...++.+++|+|+........ ....+..+ ..+.++|+|
T Consensus 74 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~vi~v~D~~~~~s~~~-------~~~~l~~i~~~~~~~~piilv~n 138 (193)
T 2oil_A 74 VKAQIWDTAGLERYRAITSAY--------YRGAVGALLVFDLTKHQTYAV-------VERWLKELYDHAEATIVVMLVGN 138 (193)
T ss_dssp EEEEEEEESCCCTTCTTHHHH--------HTTCCEEEEEEETTCHHHHHT-------HHHHHHHHHTTSCTTCEEEEEEE
T ss_pred EEEEEEeCCCchhhhhhhHHH--------hccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhcCCCCeEEEEEE
Confidence 457799999976543322211 234688999999987543211 11122222 346788999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+|+.+..+. ..+....+.+.. ...++ .|++++.++++++..+
T Consensus 139 K~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 139 KSDLSQAREV--PTEEARMFAENN--GLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp CGGGGGGCCS--CHHHHHHHHHHT--TCEEEEECTTTCTTHHHHHHHH
T ss_pred CCCccccccc--CHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 9999865432 234455544443 34555 8999999999888765
No 90
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.25 E-value=2.4e-11 Score=96.47 Aligned_cols=147 Identities=19% Similarity=0.155 Sum_probs=82.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+. .+....... .+.... ...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~----~~~~~~~~t----~~~~~~-------------~~~----------------- 58 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI----GEVVTTKPT----IGFNVE-------------TLS----------------- 58 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC----SEEEEECSS----TTCCEE-------------EEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhc----CCcCccCCc----CccceE-------------EEE-----------------
Confidence 345689999999999999999983 333211111 111100 001
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH------
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------ 184 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------ 184 (257)
..+..+.++||||......... .....++.+++|+|+........ ....+.+
T Consensus 59 -------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~~~~~~~ 116 (183)
T 1moz_A 59 -------YKNLKLNVWDLGGQTSIRPYWR--------CYYADTAAVIFVVDSTDKDRMST-------ASKELHLMLQEEE 116 (183)
T ss_dssp -------ETTEEEEEEEEC----CCTTGG--------GTTTTEEEEEEEEETTCTTTHHH-------HHHHHHHHTTSST
T ss_pred -------ECCEEEEEEECCCCHhHHHHHH--------HHhccCCEEEEEEECCCHHHHHH-------HHHHHHHHHcChh
Confidence 1134577999999754322211 12335789999999875422111 0111111
Q ss_pred -HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 185 -IAFADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 185 -l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...|.++|+||+|+.+... ..++...+... ....+++ .|++++.|+++++..+
T Consensus 117 ~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (183)
T 1moz_A 117 LQDAALLVFANKQDQPGALS----ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174 (183)
T ss_dssp TSSCEEEEEEECTTSTTCCC----HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred hCCCeEEEEEECCCCCCCCC----HHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 2346789999999987533 34454444321 1223455 8999999999988765
No 91
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.25 E-value=4e-13 Score=121.71 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=88.5
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+-++|+|..|+|||||+|+|+ +.+.+.....+|.+..... ...++.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~----~~~~~~~~~~~gtT~d~~~-------------~~~~~~-------------- 80 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALV----GQNVSIVSDYAGTTTDPVY-------------KSMELH-------------- 80 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSC----C-------------CCCCE-------------EEEEET--------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH----cCCCCccCCCCCeeeeeEE-------------EEEEEC--------------
Confidence 345679999999999999999998 4444455555554221110 011111
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
....+.|+||||..+....... ..+........+|.+++|+|+...... .. +...+.+...+.
T Consensus 81 ---------~~~~l~liDTpG~~d~~~l~~~-~~~~~~~~l~~aD~vllVvD~~~~~~~-~~------~l~~l~~~~~pi 143 (423)
T 3qq5_A 81 ---------PIGPVTLVDTPGLDDVGELGRL-RVEKARRVFYRADCGILVTDSAPTPYE-DD------VVNLFKEMEIPF 143 (423)
T ss_dssp ---------TTEEEEEEECSSTTCCCTTCCC-CHHHHHHHHTSCSEEEEECSSSCCHHH-HH------HHHHHHHTTCCE
T ss_pred ---------CCCeEEEEECcCCCcccchhHH-HHHHHHHHHhcCCEEEEEEeCCChHHH-HH------HHHHHHhcCCCE
Confidence 1125789999998654322100 001111223458999999999332221 11 233445557788
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
++|+||+|+.+.... +..+.+.+... .+++ +|++++.++++++..+...
T Consensus 144 IvV~NK~Dl~~~~~~-----~~~~~l~~~~g-~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 144 VVVVNKIDVLGEKAE-----ELKGLYESRYE-AKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp EEECCCCTTTTCCCT-----HHHHHSSCCTT-CCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred EEEEeCcCCCCccHH-----HHHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHh
Confidence 999999999887642 22222322222 3444 8999999999888876433
No 92
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.25 E-value=1.7e-11 Score=98.39 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=63.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||.......... .....+.+++|+|+......... . .+...+.+. ..+.++|+||+|
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~p~ilv~nK~D 132 (196)
T 3tkl_A 65 IKLQIWDTAGQERFRTITSS--------YYRGAHGIIVVYDVTDQESFNNV-K---QWLQEIDRYASENVNKLLVGNKCD 132 (196)
T ss_dssp EEEEEEEECCSGGGCTTHHH--------HHTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCcHhhhhhHHH--------HHhhCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCCEEEEEECcc
Confidence 45779999995433222221 12346899999999875432111 0 012222232 456789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+.... .........+..+ .+++ .|++++.++++++..+.
T Consensus 133 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 133 LTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp CTTTCCS--CHHHHHHHHHHTT--CCEEEECTTTCTTHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHH
Confidence 9876543 2234444444433 3455 89999999998877653
No 93
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.24 E-value=6.4e-12 Score=97.79 Aligned_cols=106 Identities=19% Similarity=0.108 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||........... ....+.+++|+|+........... . +....... ..|.++|+||+|
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~-~--~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLY--------IKNGQGFILVYSLVNQQSFQDIKP-M--RDQIIRVKRYEKVPVILVGNKVD 119 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHH--------HHHCSEEEEEEETTCHHHHHHHHH-H--HHHHHHHTTTSCCCEEEEEECGG
T ss_pred EEEEEEECCCchhhHHHHHHH--------hccCCEEEEEEeCCCHHHHHHHHH-H--HHHHHHhcCCCCCCEEEEEECCc
Confidence 347799999977655544322 224588999999987543211100 0 11112221 357789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+..+ .+++ .|++++.|+++++..+
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 120 LESEREV--SSSEGRALAEEWG--CPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp GGGGCCS--CHHHHHHHHHHHT--SCEEEECTTCHHHHHHHHHHH
T ss_pred ccccccC--CHHHHHHHHHHhC--CCEEEecCCCCcCHHHHHHHH
Confidence 9765442 1233444444432 2344 8999999999888754
No 94
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.24 E-value=3.6e-11 Score=94.93 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=87.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.... ......+ .+.+ ......+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~t-~~~~------------~~~~~~~~--------------- 53 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF------VSDYDPT-IEDS------------YTKICSVD--------------- 53 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC------CSSCCTT-CCEE------------EEEEEEET---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC------ccccCCC-cCce------------EEEEEEEC---------------
Confidence 456789999999999999999986310 0111111 1100 00011110
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~ 187 (257)
.....+.|+||||..........+ ....+.+++|+|+.......... .. +....... ..
T Consensus 54 -------~~~~~~~~~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~-~~--~~~~~~~~~~~~~ 115 (181)
T 2fn4_A 54 -------GIPARLDILDTAGQEEFGAMREQY--------MRAGHGFLLVFAINDRQSFNEVG-KL--FTQILRVKDRDDF 115 (181)
T ss_dssp -------TEEEEEEEEECCCTTTTSCCHHHH--------HHHCSEEEEEEETTCHHHHHHHH-HH--HHHHHHHHTSSCC
T ss_pred -------CEEEEEEEEECCCchhhHHHHHHH--------HhhCCEEEEEEeCCCHHHHHHHH-HH--HHHHHHhcCCCCC
Confidence 112457799999965433222211 12468899999998754321110 00 11111222 34
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.++|+||+|+.+..+. ..+....+.... ...++ +|++++.|+++++..+.
T Consensus 116 piilv~nK~Dl~~~~~v--~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~ 167 (181)
T 2fn4_A 116 PVVLVGNKADLESQRQV--PRSEASAFGASH--HVAYFEASAKLRLNVDEAFEQLV 167 (181)
T ss_dssp CEEEEEECGGGGGGCCS--CHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHH
T ss_pred CEEEEEECccccccccc--CHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHH
Confidence 67899999999875442 123333333332 34565 79999999999887663
No 95
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.24 E-value=2e-11 Score=95.22 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=62.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-H-hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-I-AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-l-~~~~vivlNK~D~ 198 (257)
..+.++||||......... .....++.+++|+|+........ .. .+...+.+ . ..|.++|+||+|+
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~piilv~nK~Dl 121 (168)
T 1z2a_A 54 VRLMLWDTAGQEEFDAITK--------AYYRGAQACVLVFSTTDRESFEA-IS---SWREKVVAEVGDIPTALVQNKIDL 121 (168)
T ss_dssp EEEEEECCTTGGGTTCCCH--------HHHTTCCEEEEEEETTCHHHHHT-HH---HHHHHHHHHHCSCCEEEEEECGGG
T ss_pred EEEEEEcCCCcHhHHHHHH--------HHhcCCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhCCCCCEEEEEECccc
Confidence 4578999999543211111 11235789999999987543211 10 01111111 1 4578899999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+. ..+......+..+ .+++ .|++.+.++++++..+
T Consensus 122 ~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 122 LDDSCI--KNEEAEGLAKRLK--LRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp GGGCSS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHHHHHH
T ss_pred Cccccc--CHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHH
Confidence 865432 2344555555443 3555 7899999999887654
No 96
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.24 E-value=4.1e-11 Score=94.45 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.++||||.......... .....+.+++|+|+........ .. .+...+.+. ..+.++|+||+|
T Consensus 63 ~~~~~~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~piilv~nK~D 130 (179)
T 2y8e_A 63 VRLQLWDTAGQERFRSLIPS--------YIRDSTVAVVVYDITNTNSFHQ-TS---KWIDDVRTERGSDVIIMLVGNKTD 130 (179)
T ss_dssp EEEEEEEECCSGGGGGGSHH--------HHHTCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHHTTSSEEEEEEECGG
T ss_pred EEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCcEEEEEECCc
Confidence 35789999996543322211 1234789999999986433211 10 011122222 345688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. .........+..+ .+++ .|++.+.++++++..+.
T Consensus 131 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 131 LSDKRQV--STEEGERKAKELN--VMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp GGGGCCS--CHHHHHHHHHHHT--CEEEEEBTTTTBSHHHHHHHHH
T ss_pred ccccCcC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 9865442 2344444455443 3555 89999999999887664
No 97
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.24 E-value=9.4e-11 Score=93.51 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
..+.|+||||........... ...++.+++|+|+.......... .+...+.+ ...|.++|+||+
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK~ 137 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAF--------FRDAMGFLLLFDLTNEQSFLNVR----NWISQLQMHAYSENPDIVLCGNKS 137 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHT--------TTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSSSSSCCEEEEEECT
T ss_pred EEEEEEeCCCcHHHHHHHHHH--------HcCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEECc
Confidence 467899999986544433221 23578999999998754432210 01111222 234678999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+..+. ..+.+....+..+ .+++ .|++.+.++++++..+.
T Consensus 138 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~ 180 (195)
T 3bc1_A 138 DLEDQRAV--KEEEARELAEKYG--IPYFETSAANGTNISHAIEMLL 180 (195)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred cccccccc--CHHHHHHHHHHcC--CCEEEEECCCCCCHHHHHHHHH
Confidence 99764432 2344555554443 2444 78999999998887653
No 98
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.23 E-value=3.2e-11 Score=95.44 Aligned_cols=103 Identities=7% Similarity=-0.005 Sum_probs=61.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlN 194 (257)
..+.++||+|...+.. ...++.+++|+|+.......... .+...+..+ ..|.++|.|
T Consensus 54 ~~l~i~Dt~G~~~~~~-------------~~~~d~~ilv~D~~~~~s~~~~~----~~~~~i~~~~~~~~~~~piilv~n 116 (178)
T 2iwr_A 54 HLVLIREEAGAPDAKF-------------SGWADAVIFVFSLEDENSFQAVS----RLHGQLSSLRGEGRGGLALALVGT 116 (178)
T ss_dssp EEEEEEECSSSCCHHH-------------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHCSSSCCCEEEEEEE
T ss_pred EEEEEEECCCCchhHH-------------HHhCCEEEEEEECcCHHHHHHHH----HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 3467899999765211 12368999999998654321110 011123333 246788999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+|+.+..+..-..+....+.+... ..+++ .|++++.++++++..+
T Consensus 117 K~Dl~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l 163 (178)
T 2iwr_A 117 QDRISASSPRVVGDARARALXADMK-RCSYYETXATYGLNVDRVFQEV 163 (178)
T ss_dssp CTTCBTTBCCCSCHHHHHHHHHHHS-SEEEEEEBTTTTBTHHHHHHHH
T ss_pred CccccccccCcCCHHHHHHHHHhhc-CCeEEEEeccccCCHHHHHHHH
Confidence 9999542222123455555555443 33555 8999999999988765
No 99
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.23 E-value=6.8e-11 Score=94.38 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=86.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|.+|+|||||+++|... .........|. ... ...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~----~~~~~~~t~g~----~~~-------------~~~----------------- 56 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE----DISHITPTQGF----NIK-------------SVQ----------------- 56 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS----CCEEEEEETTE----EEE-------------EEE-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC----CCCcccCcCCe----EEE-------------EEE-----------------
Confidence 3467899999999999999999842 22222222221 100 001
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~ 187 (257)
..+..+.++||||........... ....+.+++|+|+........... . +...+.. -..
T Consensus 57 -------~~~~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~-~--~~~~~~~~~~~~~ 118 (181)
T 1fzq_A 57 -------SQGFKLNVWDIGGQRKIRPYWRSY--------FENTDILIYVIDSADRKRFEETGQ-E--LTELLEEEKLSCV 118 (181)
T ss_dssp -------ETTEEEEEEECSSCGGGHHHHHHH--------HTTCSEEEEEEETTCGGGHHHHHH-H--HHHHTTCGGGTTC
T ss_pred -------ECCEEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECcCHHHHHHHHH-H--HHHHHhChhhcCC
Confidence 113457799999976544332211 124789999999986432111000 0 1111111 235
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|.||+|+.+... .+++...+... ....+++ +|++++.|+++++..+.
T Consensus 119 piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 119 PVLIFANKQDLLTAAP----ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp CEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CEEEEEECcCcccCCC----HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 7788999999987643 34444433211 1223455 79999999999887663
No 100
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.23 E-value=3.5e-11 Score=97.36 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=62.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||........... ...++.+++|+|+.......... .+...+.+. ..|.++|+||+|
T Consensus 77 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~iilv~d~~~~~s~~~~~----~~~~~i~~~~~~~~piilv~NK~D 144 (199)
T 2p5s_A 77 TVLQLWDTAGQERFRSIAKSY--------FRKADGVLLLYDVTCEKSFLNIR----EWVDMIEDAAHETVPIMLVGNKAD 144 (199)
T ss_dssp EEEEEEECTTCTTCHHHHHHH--------HHHCSEEEEEEETTCHHHHHTHH----HHHHHHHHHC---CCEEEEEECGG
T ss_pred EEEEEEECCCCcchhhhHHHH--------HhhCCEEEEEEECCChHHHHHHH----HHHHHHHHhcCCCCCEEEEEECcc
Confidence 457799999976654443221 23468999999998654322110 012222222 457889999999
Q ss_pred CCCc------CCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSP------ERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~------~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+. .+. ..+......+..+ ++++ +|++.+.|+++++..+
T Consensus 145 l~~~~~~~~~~~v--~~~~~~~~~~~~~--~~~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 145 IRDTAATEGQKCV--PGHFGEKLAMTYG--ALFCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp GHHHHHHTTCCCC--CHHHHHHHHHHHT--CEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccccccccc--CHHHHHHHHHHcC--CeEEEeeCCCCCCHHHHHHHH
Confidence 9731 111 1233344444432 3555 7899999999888765
No 101
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.23 E-value=9.3e-11 Score=93.79 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.|+||||.......... .....+.+++|+|+.......... .+...+.+. ..+.++|+||+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~p~ilv~nK~ 136 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQ--------YMRTGEGFLCVFAINNSKSFADIN----LYREQIKRVKDSDDVPMVLVGNKC 136 (190)
T ss_dssp EEEEEEECCC-------------------CTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEEECCChHHHHHHHHH--------hhCcCCEEEEEEECcCHHHHHHHH----HHHHHHHHHhCCCCCeEEEEEECC
Confidence 45789999996543332221 123468899999998654321110 012222222 35778999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+... ..+.+.+..+..+ .+++ .|++++.++++++..+
T Consensus 137 Dl~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 137 DLPTRTV---DTKQAHELAKSYG--IPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp TCSCCCS---CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHH
T ss_pred cCCcccC---CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHH
Confidence 9987432 2455555555544 2444 7899999999888765
No 102
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=2.8e-11 Score=97.38 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhcCEEEEeC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~~vivlNK 195 (257)
..+.|+||||........... ....+.+++|+|+........ .. .+...+.++ ..|.++|+||
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVFSVTSKQSLEE-LG---PIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHH--------HHHCSEEEEEEETTCHHHHHT-TH---HHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEEeCCChHHhHHHHHHh--------hccCCEEEEEEECcCHHHHHH-HH---HHHHHHHHHhcCCCCCCEEEEEEC
Confidence 457899999976654443321 123689999999986443211 10 011222222 3477999999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+|+...+. ..+......+..+ .+++ +|++++.|+++++..+.
T Consensus 124 ~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 166 (199)
T 2gf0_A 124 CDETQREV---DTREAQAVAQEWK--CAFMETSAKMNYNVKELFQELL 166 (199)
T ss_dssp TTCSSCSS---CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHH
T ss_pred ccCCcccc---CHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHH
Confidence 99986432 1344444444433 3455 79999999998887763
No 103
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.22 E-value=1.2e-11 Score=98.43 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..+.|+||||........... ....+.+++|+|+.......... .+...+.+. ..|.++|+||+
T Consensus 52 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~i~v~nK~ 119 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAMRDQY--------MRTGEGFLCVFAINNTKSFEDIH----HYREQIKRVKDSEDVPMVLVGNKC 119 (189)
T ss_dssp EEEEEEECCCC---CTTHHHH--------HHHCSEEEEEEETTCHHHHHHHH----HHHHHHHHHTTCSCCCEEEEEECT
T ss_pred EEEEEEECCCcHHHHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEECc
Confidence 346689999965433322211 12368899999998654321110 011222221 34678999999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+.... .+......+..+ .+++ +|++++.|+++++..+.
T Consensus 120 Dl~~~~~~---~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 120 DLPSRTVD---TKQAQDLARSYG--IPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp TSSSCSSC---HHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred cCcccccC---HHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 99865432 344444444443 2344 79999999999887653
No 104
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.21 E-value=1.8e-11 Score=97.12 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=87.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.... ......+ .+.+ ......+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~------------~~~~~~~~--------------- 50 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF------VDSYDPT-IENT------------FTKLITVN--------------- 50 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC------CSCCCTT-CCEE------------EEEEEEET---------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC------CCCCCCC-cccc------------EEEEEEEC---------------
Confidence 456789999999999999999985210 0111111 1100 00111111
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~ 187 (257)
.....+.++||||......... .....++.+++|+|+.......... .. +...... ...
T Consensus 51 -------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~-~~--~~~~~~~~~~~~~ 112 (181)
T 3t5g_A 51 -------GQEYHLQLVDTAGQDEYSIFPQ--------TYSIDINGYILVYSVTSIKSFEVIK-VI--HGKLLDMVGKVQI 112 (181)
T ss_dssp -------TEEEEEEEEECCCCCTTCCCCG--------GGTTTCSEEEEEEETTCHHHHHHHH-HH--HHHHHHHC----C
T ss_pred -------CEEEEEEEEeCCCchhhhHHHH--------HHHhcCCEEEEEEECCCHHHHHHHH-HH--HHHHHHhcCCCCC
Confidence 1124567999999654321111 1123478999999998644321110 00 1111111 245
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
|.++|+||+|+....+. ..+......+..+ ++++ .|++++.++++++..+..
T Consensus 113 p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 113 PIMLVGNKKDLHMERVI--SYEEGKALAESWN--AAFLESSAKENQTAVDVFRRIIL 165 (181)
T ss_dssp CEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEEECccchhccee--cHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHHHHHH
Confidence 77899999999765432 2345555555443 4555 789999999988877643
No 105
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.21 E-value=9.6e-11 Score=95.14 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=65.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||........... ...++.+++|+|+...... .... .+...+.+. ..+.++|.||+|
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~iilv~D~~~~~s~-~~~~---~~~~~i~~~~~~~~piilv~NK~D 145 (201)
T 2hup_A 78 VKLQIWDTAGQERFRTITQSY--------YRSANGAILAYDITKRSSF-LSVP---HWIEDVRKYAGSNIVQLLIGNKSD 145 (201)
T ss_dssp EEEEEECCTTCGGGHHHHHHH--------HTTCSEEEEEEETTBHHHH-HTHH---HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCcHhHHHHHHHH--------HhhCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCCEEEEEECCc
Confidence 457899999976544433221 2246899999999865432 1110 011122221 246688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+++.+..+..+ ...++ +|++++.++++++..+.
T Consensus 146 l~~~~~v--~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l~ 188 (201)
T 2hup_A 146 LSELREV--SLAEAQSLAEHYD-ILCAIETSAKDSSNVEEAFLRVA 188 (201)
T ss_dssp CGGGCCS--CHHHHHHHHHHTT-CSEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC-CCEEEEEeCCCCCCHHHHHHHHH
Confidence 9864332 2455555555443 22555 78999999999887653
No 106
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.21 E-value=1.9e-11 Score=102.17 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=80.0
Q ss_pred CCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 27 NDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 27 ~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
....+.+.++++|.+|+|||||+|+|+.... .....++. +++... ......
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~-----~~~~~~~~--~~t~~~---------~~~~~~------------- 74 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKV-----FHSGTAAK--SITKKC---------EKRSSS------------- 74 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCC-----SCC---------CCSC---------EEEEEE-------------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCc-----CccCCCCC--ceeeeE---------EEEEEE-------------
Confidence 3445567899999999999999999995311 01111110 000000 000000
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcH----HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~----~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
..+..+.|+||||+.+.. ...+.+. .........++.+++|+|+.++.......- ..+...+
T Consensus 75 -----------~~~~~i~liDTpG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l--~~~~~~~ 140 (239)
T 3lxx_A 75 -----------WKETELVVVDTPGIFDTEVPNAETSKEII-RCILLTSPGPHALLLVVPLGRYTEEEHKAT--EKILKMF 140 (239)
T ss_dssp -----------ETTEEEEEEECCSCC-----CHHHHHHHH-HHHHHTTTCCSEEEEEEETTCCSSHHHHHH--HHHHHHH
T ss_pred -----------eCCceEEEEECCCccCCCCCHHHHHHHHH-HHHHhcCCCCcEEEEEeeCCCCCHHHHHHH--HHHHHHh
Confidence 123467899999987542 1111111 111112235799999999875433211100 0011111
Q ss_pred -HHHhhcCEEEEeCCCCCCcCCCcchH----HHHHHHHHHhCCCCEEEEeec-----CCcChhhhhcCc
Q 025133 183 -HQIAFADVVILNKVDLVSPERSGDSL----DELEKEIHEINSLAHVIRSVR-----CQVDLSEVLNCR 241 (257)
Q Consensus 183 -~ql~~~~vivlNK~D~~~~~~~~~~l----~~~~~~l~~~~~~a~i~~s~~-----~~~~~~~l~~~~ 241 (257)
.....+.++|+||+|+.........+ +.+...+++...... +.+.. ...++.+|+..+
T Consensus 141 ~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~v~~ll~~i 208 (239)
T 3lxx_A 141 GERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYC-ALNNKATGAEQEAQRAQLLGLI 208 (239)
T ss_dssp HHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEE-ECCTTCCHHHHHHHHHHHHHHH
T ss_pred hhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEE-EEECCCCccccHHHHHHHHHHH
Confidence 12334789999999998765432222 245566666654432 23222 124666666554
No 107
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.21 E-value=4.4e-11 Score=96.09 Aligned_cols=105 Identities=17% Similarity=0.085 Sum_probs=61.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||......... .....++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 70 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~----~~l~~i~~~~~~~~piilv~nK~D 137 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSITR--------SYYRGAAGALLVYDITRRETFNHLT----SWLEDARQHSSSNMVIMLIGNKSD 137 (191)
T ss_dssp EEEEEECCTTGGGTSCCCH--------HHHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCchhhhhhHH--------HHhccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECcc
Confidence 4578999999542211110 1123478999999998754321110 011222222 346688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+......+..+ ..++ .|++++.++++++..+
T Consensus 138 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 138 LESRRDV--KREEGEAFAREHG--LIFMETSAKTACNVEEAFINT 178 (191)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHH
T ss_pred cCCcccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 9765432 2344445444443 3555 8999999999988765
No 108
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.21 E-value=7.8e-11 Score=92.95 Aligned_cols=108 Identities=10% Similarity=0.044 Sum_probs=63.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhc-CEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFA-DVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~-~vivlN 194 (257)
..+.++||||........... ...++.+++|+|+........ .. .+...+.+. ..+ .++|.|
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~i~~~~~~~~~~~~iilv~n 123 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKY--------IYGAQGVLLVYDITNYQSFEN-LE---DWYTVVKKVSEESETQPLVALVGN 123 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHH--------HTTCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred EEEEEEECCCCccccchhhHH--------HhhCCEEEEEEECCCHHHHHH-HH---HHHHHHHHHhcccCCCCeEEEEEE
Confidence 457899999965443322211 234789999999987544211 10 011222221 234 477899
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
|+|+.+..+. ..+......+..+ .+++ .|++++.|+++++..+...
T Consensus 124 K~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 124 KIDLEHMRTI--KPEKHLRFCQENG--FSSHFVSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp CGGGGGGCSS--CHHHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred cccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999764332 1344444444443 3455 8999999999988776433
No 109
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.21 E-value=6.4e-11 Score=94.92 Aligned_cols=103 Identities=9% Similarity=0.071 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
..+.++||+|..... + ....+.+++|+|+........... +...+.+ ...+.++|.||+
T Consensus 67 ~~l~i~Dt~G~~~~~-~------------~~~~~~~i~v~d~~~~~s~~~~~~----~~~~i~~~~~~~~~piilv~nK~ 129 (184)
T 3ihw_A 67 YLLLIRDEGGPPELQ-F------------AAWVDAVVFVFSLEDEISFQTVYN----YFLRLCSFRNASEVPMVLVGTQD 129 (184)
T ss_dssp EEEEEEECSSSCCHH-H------------HHHCSEEEEEEETTCHHHHHHHHH----HHHHHHTTSCGGGSCEEEEEECT
T ss_pred EEEEEEECCCChhhh-e------------ecCCCEEEEEEECcCHHHHHHHHH----HHHHHHHhcCCCCCCEEEEEECc
Confidence 346689999986543 1 113689999999987543222100 1112222 234678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+....+..-..+....+.+..+ ...++ .|++++.++++++...
T Consensus 130 Dl~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~gv~~lf~~l 174 (184)
T 3ihw_A 130 AISAANPRVIDDSRARKLSTDLK-RCTYYETCATYGLNVERVFQDV 174 (184)
T ss_dssp TCBTTBCCCSCHHHHHHHHHHTT-TCEEEEEBTTTTBTHHHHHHHH
T ss_pred ccccccccccCHHHHHHHHHHcC-CCeEEEecCCCCCCHHHHHHHH
Confidence 99643332233455566555543 34555 8999999999988765
No 110
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.21 E-value=4.2e-11 Score=96.55 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=82.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+..-++++|.+|+|||||+++|+.. +.. ...+. .+... ....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~----~~~--~~~~t--~~~~~-------------~~~~----------------- 69 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG----EIV--TTIPT--IGFNV-------------ETVE----------------- 69 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS----CCE--EEEEE--TTEEE-------------EEEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC----Ccc--ccCCc--CceeE-------------EEEE-----------------
Confidence 3456899999999999999999842 111 11111 11110 0000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---Hhh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~ 187 (257)
..+..+.++||||.......... ....++.+++|+|+........... . +...... -..
T Consensus 70 -------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~~-~--l~~~~~~~~~~~~ 131 (192)
T 2b6h_A 70 -------YKNICFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRERVQESAD-E--LQKMLQEDELRDA 131 (192)
T ss_dssp -------ETTEEEEEEECC-----CTTHHH--------HHHTCCEEEEEEETTCGGGHHHHHH-H--HHHHHTCGGGTTC
T ss_pred -------ECCEEEEEEECCCCHhHHHHHHH--------HhccCCEEEEEEECCCHHHHHHHHH-H--HHHHhcccccCCC
Confidence 12355789999997543222111 1235789999999986532111000 0 1111111 135
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|+||+|+.+... ..++...+... ....+++ .|++++.|+++++..+.
T Consensus 132 piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 132 VLLVFANKQDMPNAMP----VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLS 186 (192)
T ss_dssp EEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred eEEEEEECCCCCCCCC----HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHH
Confidence 6789999999977543 34444443321 1223455 78999999999887653
No 111
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.21 E-value=5.8e-11 Score=96.21 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=86.8
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+..-++|+|.+|+|||||+++|+..... .....+ .+.+ ......+.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~------------~~~~~~~~-------------- 68 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS------EGYDPT-VENT------------YSKIVTLG-------------- 68 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC------SCCCCC-SEEE------------EEEEEC----------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC------CCCCCc-cceE------------EEEEEEEC--------------
Confidence 34456899999999999999999863110 000010 1000 00000000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----H
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----I 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l 185 (257)
.....+.|+||||......... ......+.+++|+|+.......... .+...+.+ .
T Consensus 69 --------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~ 128 (201)
T 3oes_A 69 --------KDEFHLHLVDTAGQDEYSILPY--------SFIIGVHGYVLVYSVTSLHSFQVIE----SLYQKLHEGHGKT 128 (201)
T ss_dssp ----------CEEEEEEEECCCCTTCCCCG--------GGTTTCCEEEEEEETTCHHHHHHHH----HHHHHHHC-----
T ss_pred --------CEEEEEEEEECCCccchHHHHH--------HHHhcCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhcCCC
Confidence 1235578999999654322111 1223578999999998654321110 01111111 1
Q ss_pred hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
..|.++|+||+|+.+..+. .........+..+ ++++ +|++.+.++++++..+.
T Consensus 129 ~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~ 182 (201)
T 3oes_A 129 RVPVVLVGNKADLSPEREV--QAVEGKKLAESWG--ATFMESSARENQLTQGIFTKVI 182 (201)
T ss_dssp CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEECccCcccccc--CHHHHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 3477999999999865543 2233444444443 3565 78999999998887763
No 112
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.21 E-value=4e-11 Score=95.26 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=60.9
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HH---HhhcCEEEEeCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ---IAFADVVILNKVDL 198 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q---l~~~~vivlNK~D~ 198 (257)
+.++||||.......... .....+.+++|+|+........ .. .+...+ .. ...|.++|+||+|+
T Consensus 68 l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQ--------YMRTGDGFLIVYSVTDKASFEH-VD---RFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp EEEEECCSCGGGCSSHHH--------HHHHCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred EEEEECCCchhhHHHHHH--------HHhcCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 557999996432222111 1234789999999987543211 10 011111 11 22467889999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-Eeec-CCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVR-CQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~-~~~~~~~l~~~~ 241 (257)
.+..+. ..+......+..+ .+++ .|++ ++.++++++..+
T Consensus 136 ~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~~v~~l~~~l 176 (183)
T 3kkq_A 136 MHLRKV--TRDQGKEMATKYN--IPYIETSAKDPPLNVDKTFHDL 176 (183)
T ss_dssp STTCCS--CHHHHHHHHHHHT--CCEEEEBCSSSCBSHHHHHHHH
T ss_pred hhccCc--CHHHHHHHHHHhC--CeEEEeccCCCCCCHHHHHHHH
Confidence 874432 2345555555554 3455 8999 899999988654
No 113
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.20 E-value=1.1e-11 Score=101.53 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=59.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||......... .....++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~piilv~nK~D 128 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKD--------VYYIGASGAILFFDVTSRITCQNLA----RWVKEFQAVVGNEAPIVVCANKID 128 (218)
T ss_dssp EEEEEEEECSGGGTSCCCH--------HHHTTCSEEEEEEETTCHHHHHTHH----HHHHHHHHHHCSSSCEEEEEECTT
T ss_pred EEEEEEecCCchhhchHHH--------HHhhcCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECCC
Confidence 4578999999543211111 1123478999999998765432211 011222222 357789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+......+. ...+++ +|++++.|+++++..+.
T Consensus 129 l~~~~~~--~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~~l~~~l~ 170 (218)
T 4djt_A 129 IKNRQKI--SKKLVMEVLKG--KNYEYFEISAKTAHNFGLPFLHLA 170 (218)
T ss_dssp CC----C--CHHHHHHHTTT--CCCEEEEEBTTTTBTTTHHHHHHH
T ss_pred Ccccccc--CHHHHHHHHHH--cCCcEEEEecCCCCCHHHHHHHHH
Confidence 9875432 12223333222 234555 89999999998877653
No 114
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.20 E-value=4.1e-11 Score=95.58 Aligned_cols=115 Identities=16% Similarity=0.193 Sum_probs=62.5
Q ss_pred CEEEEecCCCCCcH-------HHHHhccccccccc-ceeeeeEEEEEeccchHHHHhhhccC--CC----hhHHHHHHhh
Q 025133 122 DHILLETTGLANPA-------PLASVLWLDDQLES-AVRLDSIITVVDAKNLLFQIDKYRHL--SS----YPEAIHQIAF 187 (257)
Q Consensus 122 ~~ilIDt~G~~~~~-------~~~~~~~~~~~~~~-~~~~~~vi~vvDa~~~~~~~~~~~~~--~~----~~~~~~ql~~ 187 (257)
.+.++||||+.... .....+. ...+.. ...++.+++|+|+..+.......... .. +.........
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEI-VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 123 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHH-HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHH-HHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCC
Confidence 47799999964321 1111110 112222 44567899999998765432221100 00 1111223356
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC-CC----CEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN-SL----AHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~-~~----a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|+||+|+.... .+......+..+ +. ..++ .|++++.|+++++..+.
T Consensus 124 piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 124 PTIVAVNKLDKIKNV-----QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp CEEEEEECGGGCSCH-----HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred ceEEEeehHhccCcH-----HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence 789999999998753 122333333333 21 1244 79999999999887654
No 115
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.20 E-value=5.7e-12 Score=100.18 Aligned_cols=114 Identities=13% Similarity=0.038 Sum_probs=65.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRP--------LSYPQTDVSLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL 121 (186)
T ss_dssp EEEEEECCCCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTSCEEEEEECHHH
T ss_pred EEEEEEECCCCHhHHHHHH--------HhccCCcEEEEEEECCChhhHHHHHH---HHHHHHHHhCCCCCEEEEeEcccc
Confidence 4567999999754322111 11235789999999987543222100 022233333 5678899999999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCCC
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDAT 246 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~~ 246 (257)
.+.... .-..+....+.+..+ ..+++ .|++++.|+++++..+.....
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cccchhhhhhcccccccCCHHHHHHHHHhcC-CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 764210 011233334444333 22555 799999999999887644433
No 116
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.20 E-value=7.9e-12 Score=111.38 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=76.3
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+.+.+.|+++|+||+|||||+|+|++. + +.+.+.|++|...... ...
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~----~-~~v~~~pftT~~~~~g-------------~~~-------------- 115 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGT----E-SEAAEYEFTTLVTVPG-------------VIR-------------- 115 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSB----C-CCGGGTCSSCCCEEEE-------------EEE--------------
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCC----C-CcccCCCCceeeeeeE-------------EEE--------------
Confidence 4456678999999999999999999953 3 3345556653321111 111
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--- 184 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--- 184 (257)
..+..+.|+||||+.+.....+.+. ...+.....+|.+++|+|+.......+.. ...+..
T Consensus 116 ----------~~~~~i~l~D~pGl~~~a~~~~~~g-~~~l~~i~~ad~il~vvD~~~p~~~~~~i------~~EL~~~~~ 178 (376)
T 4a9a_A 116 ----------YKGAKIQMLDLPGIIDGAKDGRGRG-KQVIAVARTCNLLFIILDVNKPLHHKQII------EKELEGVGI 178 (376)
T ss_dssp ----------ETTEEEEEEECGGGCCC-----CHH-HHHHHHHHHCSEEEEEEETTSHHHHHHHH------HHHHHHTTE
T ss_pred ----------eCCcEEEEEeCCCccCCchhhhHHH-HHHHHHHHhcCccccccccCccHHHHHHH------HHHHHHhhH
Confidence 2345688999999876543332221 33455667899999999998765443321 111111
Q ss_pred --HhhcCEEEEeCCCCC
Q 025133 185 --IAFADVVILNKVDLV 199 (257)
Q Consensus 185 --l~~~~vivlNK~D~~ 199 (257)
.+.+-.+++||+|.-
T Consensus 179 ~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 179 RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EETCCCCCEEEEECSSS
T ss_pred hhccCChhhhhhHhhhh
Confidence 234678999999964
No 117
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=1.3e-11 Score=98.87 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=62.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-------hhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-------~~~~vivl 193 (257)
..+.|+||||.......... ....++.+++|+|+........ +...+.++ ..+.++|+
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~p~ilv~ 128 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPS--------YYRGAQGVILVYDVTRRDTFVK-------LDNWLNELETYCTRNDIVNMLVG 128 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHH--------HHTTCCEEEEEEETTCHHHHHT-------HHHHHHHHTTCCSCSCCEEEEEE
T ss_pred EEEEEEeCCCchhhhhhhHH--------HhccCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhcCcCCCcEEEEE
Confidence 45789999996433222111 1234789999999987543211 11122222 23568899
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
||+|+..... ..+......+..+ ..++ +|++++.++++++..+..
T Consensus 129 nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 174 (195)
T 1x3s_A 129 NKIDKENREV---DRNEGLKFARKHS--MLFIEASAKTCDGVQCAFEELVE 174 (195)
T ss_dssp ECTTSSSCCS---CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHHHH
T ss_pred ECCcCccccc---CHHHHHHHHHHcC--CEEEEecCCCCCCHHHHHHHHHH
Confidence 9999954332 2344555555433 4555 789999999888877643
No 118
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=7.1e-11 Score=94.84 Aligned_cols=106 Identities=10% Similarity=0.112 Sum_probs=63.1
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~ 196 (257)
...+.|+||||........... ...++.+++|+|+...... .... .+...+.+. ..+.++|+||+
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~piilv~nK~ 138 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAY--------YRGAMGFILMYDITNEESF-NAVQ---DWATQIKTYSWDNAQVILVGNKC 138 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHH--------HTTCCEEEEEEETTCHHHH-HTHH---HHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEEeCCChHHHHHHHHHH--------HccCCEEEEEEECcCHHHH-HHHH---HHHHHHHHhcCCCCCEEEEEECC
Confidence 3457899999954333332211 2346899999999864332 1110 022222221 34678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
|+.+.... ..+......+..+ .+++ .|++++.++++++..+
T Consensus 139 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 139 DMEEERVV--PTEKGQLLAEQLG--FDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHH
T ss_pred CCcccccc--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHH
Confidence 99765432 2344444444443 3555 7999999999988765
No 119
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.9e-11 Score=115.60 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=62.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHh--hhccCCChhHHHHHHhhc-CEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--KYRHLSSYPEAIHQIAFA-DVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~--~~~~~~~~~~~~~ql~~~-~vivlNK~ 196 (257)
+..+.|+||||........ ......+|.+++|+|+........ ...+..........++.+ .++|+||+
T Consensus 244 ~~~~~iiDTPG~e~f~~~~--------~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKi 315 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNA--------IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 315 (611)
T ss_dssp SCEEEEEECCSSSCHHHHH--------TTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECT
T ss_pred CceEEEEECCCCcccHHHH--------HHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecc
Confidence 4678999999986532222 223456899999999987521100 000000011222334434 67789999
Q ss_pred CCCCcCC--CcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhhh
Q 025133 197 DLVSPER--SGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSEV 237 (257)
Q Consensus 197 D~~~~~~--~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~l 237 (257)
|+.+..+ ..+..+.+...++.+.- ..+++ +|++++.|+.++
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9987322 11123344444444432 35666 799999998766
No 120
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.19 E-value=9.8e-12 Score=101.30 Aligned_cols=109 Identities=15% Similarity=0.069 Sum_probs=64.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 78 VNLGLWDTAGLEDYDRLRP--------LSYPQTDVFLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSCCEEEEEECHHH
T ss_pred EEEEEEECCCchhhHHHHH--------HHhccCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEechhh
Confidence 3466999999743322111 12335799999999987654322110 122333333 4678999999999
Q ss_pred CCcCCCc----------chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSG----------DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~----------~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+.. ...+......+..+ ..+++ +|++++.|+++++..+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l 199 (204)
T 4gzl_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-AVKYLECSALTQRGLKTVFDEA 199 (204)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHH
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHhcC-CcEEEEeeCCCCCCHHHHHHHH
Confidence 8653210 11233444444433 33455 7999999999988754
No 121
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.19 E-value=2e-10 Score=92.97 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-------hhcCEEEE
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL 193 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-------~~~~vivl 193 (257)
..+.+.||+|........... . ....+.+++|+|+........ +...+.++ ..|.++|.
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~~----~---~~~~d~~ilv~d~~~~~s~~~-------~~~~~~~i~~~~~~~~~piilv~ 137 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRDH----C---LQTGDAFLIVFSVTDRRSFSK-------VPETLLRLRAGRPHHDLPVILVG 137 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHHH----H---HHHCSEEEEEEETTCHHHHHT-------HHHHHHHHHHHSTTSCCCEEEEE
T ss_pred EEEEEEecCCCccchhhhHHH----h---hccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhcCCCCCCEEEEe
Confidence 456788999986543322111 1 124689999999986443211 11122222 34678899
Q ss_pred eCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
||+|+.+..+. ..++...+.+..+ .+++ .|++.+.++++++..+.
T Consensus 138 nK~Dl~~~~~v--~~~~~~~~a~~~~--~~~~e~Sa~~~~~v~~lf~~l~ 183 (195)
T 3cbq_A 138 NKSDLARSREV--SLEEGRHLAGTLS--CKHIETSAALHHNTRELFEGAV 183 (195)
T ss_dssp ECTTCTTTCCS--CHHHHHHHHHHTT--CEEEEEBTTTTBSHHHHHHHHH
T ss_pred echhccccCCc--CHHHHHHHHHHhC--CEEEEEcCCCCCCHHHHHHHHH
Confidence 99999865432 2344444444433 3555 89999999999887663
No 122
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.19 E-value=1.5e-11 Score=99.51 Aligned_cols=105 Identities=17% Similarity=0.081 Sum_probs=54.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH------HhhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------IAFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------l~~~~vivlN 194 (257)
..+.|+||||......... .....++.+++|+|+.......... .+...+.. ...|.++|+|
T Consensus 73 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~~~piilv~n 140 (208)
T 2yc2_C 73 VELFLLDTAGSDLYKEQIS--------QYWNGVYYAILVFDVSSMESFESCK----AWFELLKSARPDRERPLRAVLVAN 140 (208)
T ss_dssp EEEEEEETTTTHHHHHHHS--------TTCCCCCEEEEEEETTCHHHHHHHH----HHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred EEEEEEECCCcHHHHHHHH--------HHHhhCcEEEEEEECCCHHHHHHHH----HHHHHHHHhhcccccCCcEEEEEE
Confidence 4578999999854333221 1234578999999998754321110 01222222 1346789999
Q ss_pred CCCCCC-cCCCcchHHHHHHHHHHhCCCCEEE-EeecC-CcChhhhhcCc
Q 025133 195 KVDLVS-PERSGDSLDELEKEIHEINSLAHVI-RSVRC-QVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~-~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~-~~~~~~l~~~~ 241 (257)
|+|+.+ ..+. ..+....+.+..+ .+++ .|+++ +.++++++..+
T Consensus 141 K~Dl~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~gi~~l~~~i 186 (208)
T 2yc2_C 141 KTDLPPQRHQV--RLDMAQDWATTNT--LDFFDVSANPPGKDADAPFLSI 186 (208)
T ss_dssp CC-------CC--CHHHHHHHHHHTT--CEEEECCC-------CHHHHHH
T ss_pred CcccchhhccC--CHHHHHHHHHHcC--CEEEEeccCCCCcCHHHHHHHH
Confidence 999987 4332 2355556565544 4555 78999 99999888765
No 123
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.19 E-value=9.8e-11 Score=95.05 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||........ ......++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~vilv~d~~~~~s~~~~~----~~~~~i~~~~~~~~piilv~nK~D 124 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRTIT--------SSYYRGSHGIIIVYDVTDQESFNGVK----MWLQEIDRYATSTVLKLLVGNKCD 124 (206)
T ss_dssp EEEEEECCTTTTTTTCCC--------GGGGTTCSEEEEEEETTCHHHHHHHH----HHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCChHHHHHHH--------HHhccCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCCEEEEEECCC
Confidence 457899999965432211 11223568999999998754322110 011222222 245688999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+....+.+..+ .+++ +|++++.++++++..+.
T Consensus 125 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 125 LKDKRVV--EYDVAKEFADANK--MPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp CTTTCCS--CHHHHHHHHHHTT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred Ccccccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 9875432 2344444444433 3455 79999999998887653
No 124
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.19 E-value=5e-11 Score=95.60 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=70.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
...+.++++|.+|+|||||+++|...... ..+....++. ..+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~--~~~~~~~~~~--~~~---------------------------------- 87 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR--PTVVSQEPLS--AAD---------------------------------- 87 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------C----------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC--cccccCCCce--eee----------------------------------
Confidence 34568999999999999999999863211 1111122221 000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc-chHHHHhhhccCCChhHHHHHH---
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAIHQI--- 185 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~-~~~~~~~~~~~~~~~~~~~~ql--- 185 (257)
.....+.++||||............ ......++.+++|+|+. .... +...... +.......
T Consensus 88 --------~~~~~~~l~Dt~G~~~~~~~~~~~~----~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~--~~~~~~~~~~~ 152 (193)
T 2ged_A 88 --------YDGSGVTLVDFPGHVKLRYKLSDYL----KTRAKFVKGLIFMVDSTVDPKK-LTTTAEF--LVDILSITESS 152 (193)
T ss_dssp --------CCCTTCSEEEETTCCBSSCCHHHHH----HHHGGGEEEEEEEEETTCCHHH-HHHHHHH--HHHHHHHHHHH
T ss_pred --------ecCCeEEEEECCCCchHHHHHHHHH----HhhcccCCEEEEEEECCCCchh-HHHHHHH--HHHHHhhhhhc
Confidence 1235577999999754322211110 01123478999999998 3222 2211000 11122111
Q ss_pred ---hhcCEEEEeCCCCCCcCCCcchHHHHHHHH
Q 025133 186 ---AFADVVILNKVDLVSPERSGDSLDELEKEI 215 (257)
Q Consensus 186 ---~~~~vivlNK~D~~~~~~~~~~l~~~~~~l 215 (257)
..|.++|+||+|+.+.....+..+.+.+.+
T Consensus 153 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l 185 (193)
T 2ged_A 153 CENGIDILIACNKSELFTARPPSKIKDALESEI 185 (193)
T ss_dssp STTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEchHhcCCCCHHHHHHHHHHHH
Confidence 456789999999998765333333333333
No 125
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.18 E-value=2.3e-12 Score=121.49 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=50.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhh--hccCCChhHHHHHHhhc-CEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK--YRHLSSYPEAIHQIAFA-DVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~--~~~~~~~~~~~~ql~~~-~vivlNK~ 196 (257)
+..+.|+||||..+. ..........+|.+|+|+|+......... ..+.........+++.+ .++|+||+
T Consensus 254 ~~~i~iiDTPGh~~f--------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKi 325 (592)
T 3mca_A 254 KKIYEIGDAPGHRDF--------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL 325 (592)
T ss_dssp -----CCEEESSSEE--------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECG
T ss_pred CeEEEEEECCChHHH--------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecc
Confidence 456889999997632 12223445678999999999863200000 00000012233445555 56689999
Q ss_pred CCCCcCC--CcchHHHHHHHH-HHhCC---CCEEE-EeecCCcChh
Q 025133 197 DLVSPER--SGDSLDELEKEI-HEINS---LAHVI-RSVRCQVDLS 235 (257)
Q Consensus 197 D~~~~~~--~~~~l~~~~~~l-~~~~~---~a~i~-~s~~~~~~~~ 235 (257)
|+.+..+ .......+...+ +...- ..+++ +|++++.|+.
T Consensus 326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 9986321 111223333333 22221 23455 8999999887
No 126
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=8e-11 Score=94.58 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=64.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 66 ~~~~i~D~~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRP--------LSYPMTDVFLICFSVVNPASFQNVKE---EWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp EEEEEECCCCSSSSTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECTTS
T ss_pred EEEEEEECCCCcchhHHHH--------HhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 4577999999765432221 11235789999999987543211100 122233333 4577899999999
Q ss_pred CCcCC----------CcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCc
Q 025133 199 VSPER----------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~----------~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~ 241 (257)
.+..+ ..-..++...+.+..+-..-+..|++++.|+++++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred cccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 86421 01123444555554432222347999999999988754
No 127
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.18 E-value=1.4e-10 Score=92.29 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D 197 (257)
..+.|+||||.......... ....++.+++|+|+........ .. .+...+.+ -..|.++|+||+|
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~-~~---~~~~~~~~~~~~~~piilv~nK~D 126 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRS--------YYRGAAGALLVYDITSRETYNA-LT---NWLTDARMLASQNIVIILCGNKKD 126 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHT--------TSTTCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHHHHHHHH--------HHhcCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhcCCCCcEEEEEECcc
Confidence 35779999997655443321 1235789999999987543211 10 01111222 2346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ...+.....+..+ .+++ .|++++.++++++..+.
T Consensus 127 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 127 LDADREV--TFLEASRFAQENE--LMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CEEEEecCCCCCCHHHHHHHHH
Confidence 9764432 2344444444432 4555 78999999998887653
No 128
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.18 E-value=8.5e-11 Score=95.29 Aligned_cols=106 Identities=12% Similarity=0.036 Sum_probs=61.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||...... + .......++.+++|+|+......... . .+...+.+. ..+.++|+||+|
T Consensus 74 ~~l~l~Dt~G~~~~~~----~----~~~~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~piilv~nK~D 141 (200)
T 2o52_A 74 VKLQIWDTAGQERFRS----V----TRSYYRGAAGALLVYDITSRETYNSL-A---AWLTDARTLASPNIVVILCGNKKD 141 (200)
T ss_dssp EEEEEECCTTHHHHSC----C----CHHHHTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHTCTTCEEEEEEECGG
T ss_pred eEEEEEcCCCcHhHHH----H----HHHHhccCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhcCCCCcEEEEEECCC
Confidence 4578999999421100 0 01112357899999999875432111 0 011112221 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ...+.....+..+ ..++ +|++++.|+++++..+.
T Consensus 142 l~~~~~v--~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 142 LDPEREV--TFLEASRFAQENE--LMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT--CEEEEECTTTCTTHHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 9764432 2344444444432 4555 89999999999887653
No 129
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.18 E-value=3.1e-12 Score=113.42 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
....|.++|+|.+|+|||||+|+|+..
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 456799999999999999999999853
No 130
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=4.5e-11 Score=97.39 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 141 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSVDSPDSLENIPE---KWVPEVKHFCPNVPIILVANKKDL 141 (207)
T ss_dssp EEEEEEECTTCTTCTTTGG--------GGCTTCCEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHHHH--------hhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEchhh
Confidence 4578999999654332211 11235789999999986543211100 122233333 5678999999999
Q ss_pred CCcCCCc----------chHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSG----------DSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~----------~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+..... -..+......+..+. ..++ .|++++.|+++++..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~el~~~l~ 195 (207)
T 2fv8_A 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQA-YDYLECSAKTKEGVREVFETAT 195 (207)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECCTTTCTTHHHHHHHHH
T ss_pred hccccchhhhhhcccCCCCHHHHHHHHHhcCC-CEEEEeeCCCCCCHHHHHHHHH
Confidence 8652100 012223333333322 2455 79999999999887663
No 131
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.16 E-value=2.7e-11 Score=111.68 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=60.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHh--hhccCCChhHHHHHHhhc-CEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--KYRHLSSYPEAIHQIAFA-DVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~--~~~~~~~~~~~~~ql~~~-~vivlNK 195 (257)
.+..+.|+||||..+...... .....+|.+++|+|+........ ..............+..+ .++|+||
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~--------~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK 180 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAI--------MGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHH--------HHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCceEEEEECCCcHHHHHHHH--------HhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence 356789999999865433221 12335799999999987521100 000000012223344433 6778999
Q ss_pred CCCCCcCC--CcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhhhh
Q 025133 196 VDLVSPER--SGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 196 ~D~~~~~~--~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~l~ 238 (257)
+|+.+..+ ..+..+.+...++.+.- ..+++ +|++++.|++++.
T Consensus 181 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 181 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred cCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 99987322 11123334444444332 34555 7999999987653
No 132
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.16 E-value=9.2e-12 Score=99.84 Aligned_cols=107 Identities=16% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HH---HhhcCEEEEeC
Q 025133 121 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ---IAFADVVILNK 195 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q---l~~~~vivlNK 195 (257)
..+.|+||||..... ..... ....++.+++|+|+.......... .+...+ .. ...+.++|+||
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~----~~~~~i~~~~~~~~~piilv~nK 136 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQH--------YYRNVHAVVFVYDMTNMASFHSLP----AWIEECKQHLLANDIPRILVGNK 136 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHH--------HHTTCCEEEEEEETTCHHHHHTHH----HHHHHHHHHCCCSCCCEEEEEEC
T ss_pred EEEEEEECCCchhhhhhhhHH--------HhcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEEC
Confidence 457899999954221 11111 123578999999998754321110 011111 21 13467889999
Q ss_pred CCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCC---cChhhhhcCccC
Q 025133 196 VDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQ---VDLSEVLNCRAY 243 (257)
Q Consensus 196 ~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~---~~~~~l~~~~~~ 243 (257)
+|+.+..+. ..+....+.+.. . ..++ .|++.+ .++.+++..+..
T Consensus 137 ~Dl~~~~~v--~~~~~~~~~~~~-~-~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 137 CDLRSAIQV--PTDLAQKFADTH-S-MPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp TTCGGGCCS--CHHHHHHHHHHT-T-CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred cccccccee--CHHHHHHHHHHc-C-CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 999765432 123344433333 2 3444 788888 899888876543
No 133
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.16 E-value=7.3e-11 Score=93.44 Aligned_cols=109 Identities=16% Similarity=0.084 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRP--------LSYRGADVFILAFSLISKASYENVSK---KWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp --CEEECCCC-CTTTTTGG--------GGGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEECCCChhhhhhHH--------hhccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEechhh
Confidence 4466999999654322211 11234789999999986543221100 122223332 4577899999999
Q ss_pred CCcCCC--------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERS--------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~--------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+..+. .-..++.....+..+ ..+++ .|++++.|+++++..+
T Consensus 125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 125 RDDKQFFIDHPGAVPITTVQGEELKKLIG-APAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp HTCHHHHHHC--CCCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHH
T ss_pred hcCcccccccccCCCCCHHHHHHHHHHcC-CCEEEEEECCCCCCHHHHHHHH
Confidence 765320 001234444444443 22455 7999999999988765
No 134
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.16 E-value=7.7e-11 Score=93.62 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=54.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||........ . .....++.+++|+|+...... .... .+...+.+. ..|.++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~-----~---~~~~~~d~~i~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~piilv~nK~D 124 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTIT-----T---AYYRGAMGIMLVYDITNEKSF-DNIR---NWIRNIEEHASADVEKMILGNKCD 124 (183)
T ss_dssp EEEEEEEC---------C-----C---TTTTTCSEEEEEEETTCHHHH-HHHH---HHHHHHHHHSCTTCEEEEEEEC--
T ss_pred EEEEEEcCCCChhhhhhH-----H---HHHhcCCEEEEEEECcCHHHH-HHHH---HHHHHHHHhcCCCCCEEEEEECcc
Confidence 457899999965432221 1 122357899999999875432 1110 011222222 346789999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.+..+. ..+....+.+..+ .+++ .|++++.++++++..+.
T Consensus 125 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 125 VNDKRQV--SKERGEKLALDYG--IKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp CCSCCCS--CHHHHHHHHHHHT--CEEEECCC---CCHHHHHHHHH
T ss_pred CCccCcC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 9865432 2344555555543 3555 78999999999887653
No 135
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.16 E-value=1.9e-10 Score=92.84 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... .....++.+++|+|+........... .+...+.+. ..|.++|.||+|+
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFDKLRP--------LCYTNTDIFLLCFSVVSPSSFQNVSE---KWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp EEEEEEECCCSTTCSSSGG--------GGGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSSCEEEEEECGGG
T ss_pred EEEEEEECCCCHHHHHHhH--------hhcCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEECHhh
Confidence 3466999999754322211 11235789999999986544322100 122222222 4577889999999
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.. ......+......+..+ ...++ .|++++.++++++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l 189 (201)
T 2q3h_A 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIK-AASYIECSALTQKNLKEVFDAA 189 (201)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHH
T ss_pred hhchhhhhhhcccccccCCHHHHHHHHHhcC-CcEEEEEecCCCCCHHHHHHHH
Confidence 7631 11112344444444443 22455 7999999999988765
No 136
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.16 E-value=1.6e-10 Score=92.45 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=85.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+++|... +.. ...+. .+.... ...
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~----~~~--~~~~t--~~~~~~-------------~~~------------------ 62 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG----DVV--TTVPT--VGVNLE-------------TLQ------------------ 62 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS----CCE--EECSS--TTCCEE-------------EEE------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC----CCC--CcCCC--CceEEE-------------EEE------------------
Confidence 456899999999999999999742 111 11221 111100 000
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHH---Hh
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQ---IA 186 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~q---l~ 186 (257)
..+..+.++||||........ . .....++.+++|+|+...... .... +...... -.
T Consensus 63 ------~~~~~~~~~Dt~G~~~~~~~~-----~---~~~~~~d~ii~v~d~~~~~s~~~~~~~-----~~~~~~~~~~~~ 123 (189)
T 2x77_A 63 ------YKNISFEVWDLGGQTGVRPYW-----R---CYFSDTDAVIYVVDSTDRDRMGVAKHE-----LYALLDEDELRK 123 (189)
T ss_dssp ------ETTEEEEEEEECCSSSSCCCC-----S---SSSTTCCEEEEEEETTCCTTHHHHHHH-----HHHHHTCSTTTT
T ss_pred ------ECCEEEEEEECCCCHhHHHHH-----H---HHhhcCCEEEEEEeCCCHHHHHHHHHH-----HHHHHhhhhcCC
Confidence 123557899999975432211 1 122367999999999864211 1110 1111111 14
Q ss_pred hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 187 ~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.|.++|+||+|+.+... ..++...+... ....+++ .|++++.++++++..+.
T Consensus 124 ~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (189)
T 2x77_A 124 SLLLIFANKQDLPDAAS----EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179 (189)
T ss_dssp CEEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CeEEEEEECCCCcCCCC----HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHH
Confidence 56789999999987643 34444443311 1222455 78999999999887654
No 137
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.16 E-value=1.6e-10 Score=94.72 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=57.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||.......... ....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 82 ~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRLRPL--------FYPDASVLLLCFDVTSPNSFDNIFN---RWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEC-----------------------CEEEEEEEEETTCHHHHHHHHH---THHHHHHHHCSSCCEEEEEECGGG
T ss_pred EEEEEEECCCchhhhHHHHH--------HhccCCEEEEEEECcCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 35779999996543332211 1236789999999986543221100 122222222 3577889999999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
...... .-..++.....+..+ ...++ .|++++.++++++..+.
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~el~~~l~ 204 (214)
T 2j1l_A 151 RKDKSLVNKLRRNGLEPVTYHRGQEMARSVG-AVAYLECSARLHDNVHAVFQEAA 204 (214)
T ss_dssp GSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-CSEEEECBTTTTBSHHHHHHHHH
T ss_pred hccchhhhhhcccccCcccHHHHHHHHHhcC-CCEEEEecCCCCCCHHHHHHHHH
Confidence 875311 011233344444433 22555 78999999999887653
No 138
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.16 E-value=9.7e-12 Score=102.34 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=84.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++++|.+|+|||||+++++.. ..........|. +.... ...+.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~---~~~~~~~~t~~~----~~~~~-----------~~~~~--------------- 60 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTG---EFEKKYVATLGV----EVHPL-----------VFHTN--------------- 60 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHH---HHTCEEETTTTE----EEEEE-----------EEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCccce----eEEEE-----------EEEEC---------------
Confidence 3446899999999999999996631 111122233332 11000 00000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhc
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFA 188 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~ 188 (257)
.....+.|+||||......... .....++.+++|+|+.......... .+...+.+. ..+
T Consensus 61 -------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~p 121 (221)
T 3gj0_A 61 -------RGPIKFNVWDTAGQEKFGGLRD--------GYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRVCENIP 121 (221)
T ss_dssp -------TEEEEEEEEEECSGGGTSCCCH--------HHHTTCCEEEEEEETTCHHHHHTHH----HHHHHHHHHSTTCC
T ss_pred -------CEEEEEEEEeCCChHHHhHHHH--------HHHhcCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCC
Confidence 1234578999999532211111 1122578999999998754432210 011112221 457
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++|+||+|+.+.... .......+..+ ..++ +|++++.|+++++..+.
T Consensus 122 ~ilv~nK~Dl~~~~~~----~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 122 IVLCGNKVDIKDRKVK----AKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp EEEEEECTTSSSCSSC----GGGCCHHHHHT--CEEEECBGGGTBTTTHHHHHHH
T ss_pred EEEEEECCcccccccc----HHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 8899999999865432 12222233322 3455 79999999998877653
No 139
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.15 E-value=6.3e-11 Score=109.43 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=87.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++++|.+|+|||||+++|+... .....+ +++.+... ..
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~------~~~~~~--T~~~~~~~-------------~~------------------- 362 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ------SVTTIP--TVGFNVET-------------VT------------------- 362 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS------CCCCCC--CSSEEEEE-------------EE-------------------
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC------CCCcCC--ccceeEEE-------------EE-------------------
Confidence 357899999999999999998632 011111 12211111 11
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~ 189 (257)
..+..+.|+||+|........ .......|.+|+|+|+........... .+...+.. -..|.
T Consensus 363 -----~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~ad~~i~V~D~~~~~s~~~~~~---~~~~~~~~~~~~~~p~ 426 (497)
T 3lvq_E 363 -----YKNVKFNVWDVGGQDKIRPLW--------RHYYTGTQGLIFVVDCADRDRIDEARQ---ELHRIINDREMRDAII 426 (497)
T ss_dssp -----SSSCEEEEEEECCCGGGSGGG--------GGGGTTCCEEEEEEETTCGGGHHHHHH---HHHHHHTSGGGTTCEE
T ss_pred -----eCCEEEEEEECCCcHHHHHHH--------HHHhccCCEEEEEEECcchhHHHHHHH---HHHHHhhhhhcCCCcE
Confidence 124568899999954332221 112345799999999986432111000 01111111 13577
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHh---CCCCEEE-EeecCCcChhhhhcCccCC
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCRAYD 244 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~~~~ 244 (257)
++|+||+|+.+... ..++...+... ....+++ +|++++.|++++++.+...
T Consensus 427 ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 481 (497)
T 3lvq_E 427 LIFANKQDLPDAMK----PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 481 (497)
T ss_dssp EEEEECCSSSSCCC----HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred EEEEECCCCCcCCC----HHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999987543 34444443321 1223455 7999999999999877443
No 140
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.15 E-value=8.3e-11 Score=96.26 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=63.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH-------HhhcCEEE
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-------IAFADVVI 192 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-------l~~~~viv 192 (257)
...+.|+||||.......... ....++.+++|+|+........ +...+.+ -..+.++|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~iilV~D~~~~~s~~~-------~~~~l~~i~~~~~~~~~piilV 147 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTA--------FFRDAMGFLLMFDLTSQQSFLN-------VRNWMSQLQANAYCENPDIVLI 147 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHH--------HHTTCCEEEEEEETTCHHHHHH-------HHHHHHTCCCCCTTTCCEEEEE
T ss_pred eEEEEEEECCCcHhHHhHHHH--------HhcCCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhcCcCCCCEEEE
Confidence 356889999995432222211 1235689999999986543211 1112222 23467889
Q ss_pred EeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 193 lNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+||+|+.+..+. ..+....+.+..+ .+++ +|++++.++++++..+.
T Consensus 148 ~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 148 GNKADLPDQREV--NERQARELADKYG--IPYFETSAATGQNVEKAVETLL 194 (217)
T ss_dssp EECTTCGGGCCS--CHHHHHHHHHHTT--CCEEEEBTTTTBTHHHHHHHHH
T ss_pred EECCcccccccc--CHHHHHHHHHHCC--CcEEEEECCCCCCHHHHHHHHH
Confidence 999999765432 2344455454443 3444 89999999998887664
No 141
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.15 E-value=2.4e-11 Score=108.32 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=86.8
Q ss_pred CCCcceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchh
Q 025133 27 NDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 27 ~~~~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
+....++.+++.|.+|+|||||+++|+.. + ++-+.+. . .+
T Consensus 16 ~~~~~m~~i~iiG~~d~GKSTL~~~L~~~------g-iTi~~~~--------~-------------~~------------ 55 (370)
T 2elf_A 16 PRGSHMANVAIIGTEKSGRTSLAANLGKK------G-TSSDITM--------Y-------------NN------------ 55 (370)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHTTSEE------E-EESSSEE--------E-------------EE------------
T ss_pred cccccCCEEEEECCCCCCHHHHHHHHHhC------C-EEEEeeE--------E-------------EE------------
Confidence 34444558999999999999999999721 1 1111110 0 00
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
...+..+.|+||||..+...... .....+|.+++|+| .......... ......+++
T Consensus 56 ----------~~~~~~i~iiDtPGh~~f~~~~~--------~~~~~aD~ailVvd-~~g~~~qt~e-----~~~~~~~~~ 111 (370)
T 2elf_A 56 ----------DKEGRNMVFVDAHSYPKTLKSLI--------TALNISDIAVLCIP-PQGLDAHTGE-----CIIALDLLG 111 (370)
T ss_dssp ----------CSSSSEEEEEECTTTTTCHHHHH--------HHHHTCSEEEEEEC-TTCCCHHHHH-----HHHHHHHTT
T ss_pred ----------ecCCeEEEEEECCChHHHHHHHH--------HHHHHCCEEEEEEc-CCCCcHHHHH-----HHHHHHHcC
Confidence 02235588999999876532221 12245799999999 5432211110 122344556
Q ss_pred hcC-EEEEe-CCCCCCcCCCcchHHHHHHHHHHhC-CCCEEE---EeecC---CcChhhhhcCcc
Q 025133 187 FAD-VVILN-KVDLVSPERSGDSLDELEKEIHEIN-SLAHVI---RSVRC---QVDLSEVLNCRA 242 (257)
Q Consensus 187 ~~~-vivlN-K~D~~~~~~~~~~l~~~~~~l~~~~-~~a~i~---~s~~~---~~~~~~l~~~~~ 242 (257)
.+. ++++| |+|+ +++...+..+++...++... ...+++ .|+++ +.|+++|++.+.
T Consensus 112 i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~ 175 (370)
T 2elf_A 112 FKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARIN 175 (370)
T ss_dssp CCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred CCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence 677 88999 9999 54321112244444444332 234554 68888 999988887653
No 142
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.14 E-value=6.2e-11 Score=97.78 Aligned_cols=105 Identities=13% Similarity=0.040 Sum_probs=60.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||......... .....++.+++|+|+.......... .+...+.+. ..+.++|+||+|
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~vilV~D~~~~~s~~~~~----~~l~~i~~~~~~~~piilv~nK~D 129 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAITS--------AYYRGAVGALIVYDISKSSSYENCN----HWLSELRENADDNVAVGLIGNKSD 129 (223)
T ss_dssp EEEEEECCTTTTTTTCCCG--------GGTTTCCEEEEEEC-CCHHHHHHHH----HHHHHHHHHCC--CEEEEEECCGG
T ss_pred EEEEEEECCCccchhhhHH--------HHhccCCEEEEEEeCCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECcc
Confidence 4578999999654322111 1123578899999998754322110 012222222 456788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..+....+.+..+ .+++ +|++++.++++++..+
T Consensus 130 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 130 LAHLRAV--PTEESKTFAQENQ--LLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp GGGGCCS--CHHHHHHHHHHTT--CEEEECCCC-CCCHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 9865432 2344445444433 4555 7899999999888665
No 143
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.14 E-value=1.5e-11 Score=118.18 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=64.7
Q ss_pred CCCEEEEecCCCCC------cH---HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 120 RLDHILLETTGLAN------PA---PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 120 ~~~~ilIDt~G~~~------~~---~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
.++++||||||+.. |. .....+. ...+. ...|.+++|+|+.......+.. .+...+.....+.+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv-~~yi~--~~aDlIL~VVDAs~~~~~~d~l----~ll~~L~~~g~pvI 221 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVT--KENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRTI 221 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHH-HHHHT--STTEEEEEEEETTSCSSSCHHH----HHHHHHCTTCSSEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHH-HHHHh--cCCcEEEEEEcCCCCcchhHHH----HHHHHHHhcCCCEE
Confidence 45799999999876 32 1121111 12222 4578999999998643322210 01222233346889
Q ss_pred EEEeCCCCCCcCCCcchHHHHHHHHHHh----CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 191 VILNKVDLVSPERSGDSLDELEKEIHEI----NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 191 ivlNK~D~~~~~~~~~~l~~~~~~l~~~----~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+|+||+|+++.... ...+.. .+. .++++++ +|+..+.++++|++.+.
T Consensus 222 lVlNKiDlv~~~~~---~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~ 273 (772)
T 3zvr_A 222 GVITKLDLMDEGTD---ARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 273 (772)
T ss_dssp EEEECTTSSCTTCC---SHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred EEEeCcccCCcchh---hHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHH
Confidence 99999999976542 111111 111 1334454 79999999988887764
No 144
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.14 E-value=7.3e-11 Score=95.70 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... ......+.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 141 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSIDSPDSLENIPE---KWTPEVKHFCPNVPIILVGNKKDL 141 (201)
T ss_dssp EEEEEECCCCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEECCCchhHHHHHH--------HhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEecHHh
Confidence 4578999999643221111 11235789999999986543221100 123333333 5678999999999
Q ss_pred CCcCCC----------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERS----------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~----------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+.... .-..++.....+..+ ...++ .|++++.|+++++..+
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~i 194 (201)
T 2gco_A 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRIS-AFGYLECSAKTKEGVREVFEMA 194 (201)
T ss_dssp TTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHH
T ss_pred hcCccchhhhcccccCcCCHHHHHHHHHhCC-CcEEEEeeCCCCCCHHHHHHHH
Confidence 875210 011233334444433 22455 7999999999988654
No 145
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.14 E-value=3.7e-11 Score=110.07 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=64.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHHHhhc-CEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFA-DVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~ql~~~-~vivlNK~ 196 (257)
+..+.|+||||..+..... ......+|.+++|+|+...... +....+.........+++.+ .++++||+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~--------~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~ 155 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNM--------ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKM 155 (458)
T ss_dssp SEEEEEEECCCCTTHHHHH--------HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECG
T ss_pred CceEEEEECCCcHHHHHHH--------HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcc
Confidence 4568999999965433222 1234468999999999875422 00000000012223444555 57789999
Q ss_pred CCCCc--CCCcchHHHHHHHHHHhCC---CCEEE-EeecCCcChhhhhc
Q 025133 197 DLVSP--ERSGDSLDELEKEIHEINS---LAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 197 D~~~~--~~~~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~~~~l~~ 239 (257)
|+.+. +......+++...++...- ..+++ .|++++.++.++..
T Consensus 156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~ 204 (458)
T 1f60_A 156 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT 204 (458)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc
Confidence 99842 2111233455555555542 24555 79999999876654
No 146
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.14 E-value=2.2e-10 Score=105.74 Aligned_cols=153 Identities=17% Similarity=0.191 Sum_probs=82.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
.+..+++|+|++|+||||++++|+.. ..|++++++..|+......+.........++.+ .....+ .-..++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~~~~~----~dp~~i 171 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF---YGSYTE----MDPVII 171 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EECCCC----SCHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE---EccCCC----CCHHHH
Confidence 45668999999999999999999853 348899999998754111110000000000100 000000 001111
Q ss_pred -HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 108 -VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 108 -~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
...+..+ ...+++++||||||.... ..+.+.+. . .......+.+++|+|+........ ....+...
T Consensus 172 ~~~al~~~--~~~~~DvvIIDTpG~~~~~~~l~~el~--~-~~~~i~pd~vllVvDa~~g~~~~~-------~a~~~~~~ 239 (504)
T 2j37_W 172 ASEGVEKF--KNENFEIIIVDTSGRHKQEDSLFEEML--Q-VANAIQPDNIVYVMDASIGQACEA-------QAKAFKDK 239 (504)
T ss_dssp HHHHHHHH--HHTTCCEEEEEECCCCTTCHHHHHHHH--H-HHHHHCCSEEEEEEETTCCTTHHH-------HHHHHHHH
T ss_pred HHHHHHHH--HHCCCcEEEEeCCCCcccchhHHHHHH--H-HHhhhcCceEEEEEeccccccHHH-------HHHHHHhh
Confidence 1223322 136799999999997754 23332221 1 111235788999999987543221 11222221
Q ss_pred hhc-CEEEEeCCCCCCcC
Q 025133 186 AFA-DVVILNKVDLVSPE 202 (257)
Q Consensus 186 ~~~-~vivlNK~D~~~~~ 202 (257)
.+ ..+|+||+|.....
T Consensus 240 -~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 240 -VDVASVIVTKLDGHAKG 256 (504)
T ss_dssp -HCCCCEEEECTTSCCCC
T ss_pred -cCceEEEEeCCccccch
Confidence 45 68999999988543
No 147
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.14 E-value=1.6e-10 Score=94.18 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=87.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
..-++++|.+|+|||||+++|+.... ....+.+.+.+.. .....+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~-------~~~~~~t~~~~~~-----------~~~~~~~---------------- 71 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF-------PPGQGATIGVDFM-----------IKTVEIN---------------- 71 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-------CTTCCCCCSEEEE-----------EEEEEET----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-------CCCCCCccceeEE-----------EEEEEEC----------------
Confidence 34689999999999999999985311 0111111111100 0001110
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhc
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFA 188 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~ 188 (257)
.....+.|+||||.......... ....++.+++|+|+........ .. .+...+.+. ..+
T Consensus 72 ------~~~~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~D~~~~~s~~~-~~---~~~~~i~~~~~~~~p 133 (201)
T 2ew1_A 72 ------GEKVKLQIWDTAGQERFRSITQS--------YYRSANALILTYDITCEESFRC-LP---EWLREIEQYASNKVI 133 (201)
T ss_dssp ------TEEEEEEEEEECCSGGGHHHHGG--------GSTTCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHSCTTCE
T ss_pred ------CEEEEEEEEECCCcHHHHHHHHH--------HHhcCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCC
Confidence 11245789999997544333321 1235789999999986543211 10 012222222 345
Q ss_pred CEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.++|.||+|+.+..+. ..+......+..+ .+++ +|++++.|+++++..+.
T Consensus 134 iilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 134 TVLVGNKIDLAERREV--SQQRAEEFSEAQD--MYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp EEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEEECCCCcccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 6889999999865432 1233444444333 3444 79999999999887653
No 148
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.13 E-value=7.3e-11 Score=103.59 Aligned_cols=148 Identities=18% Similarity=0.149 Sum_probs=82.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.-++|+|.+|+|||||+++|+.. ++ ....+ +.+.+...+ .
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~----~~--~~~~p--T~~~~~~~~-------------~------------------- 205 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLG----EI--VTTIP--TIGFNVETV-------------E------------------- 205 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSS----CC--EEEEE--ETTEEEEEE-------------E-------------------
T ss_pred ceEEEECCCCccHHHHHHHHhCC----CC--CCccc--ccceEEEEE-------------e-------------------
Confidence 36899999999999999999852 11 11111 111111000 0
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHH--HHhhhccCCChhHHHHHH---hh
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQI---AF 187 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~ql---~~ 187 (257)
..+..+.|+||||......+... .....+.+++|+|+..... ..... +...+... ..
T Consensus 206 -----~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~vilV~D~~~~~s~~~~~~~-----~~~~~~~~~~~~~ 267 (329)
T 3o47_A 206 -----YKNISFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRERVNEAREE-----LMRMLAEDELRDA 267 (329)
T ss_dssp -----ETTEEEEEEECC-----CCSHHH--------HHTTEEEEEEEEETTCSSSHHHHHHH-----HHHHHTCGGGTTC
T ss_pred -----cCcEEEEEEECCCCHhHHHHHHH--------HhccCCEEEEEEECCchHHHHHHHHH-----HHHHHhhhccCCC
Confidence 12356789999994332211111 1234789999999964321 11110 11111111 34
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|.++|+||+|+.+... .+++...+.... ...+++ +|++++.|+++++..+.
T Consensus 268 piilV~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 268 VLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp EEEEEEECTTSTTCCC----HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred eEEEEEECccCCcccC----HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 6788999999987654 355555443321 223455 79999999999987653
No 149
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.13 E-value=2e-10 Score=93.39 Aligned_cols=155 Identities=18% Similarity=0.170 Sum_probs=84.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
...-++|+|.+|+|||||+++|+..... ....+. .+.+.. .....+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~--~~~~~~-----------~~~~~~~--------------- 65 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-----PSFITT--IGIDFK-----------IKTVDIN--------------- 65 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-----CSSSCC--CSCCEE-----------EEEEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-----cccCCc--ccceEE-----------EEEEEEC---------------
Confidence 3457899999999999999999853110 001111 111100 0011110
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hh
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~ 187 (257)
.....+.|+||||........ ......++.+++|+|+...... .... .+...+.+. ..
T Consensus 66 -------~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~-~~~~---~~~~~i~~~~~~~~ 126 (213)
T 3cph_A 66 -------GKKVKLQLWDTAGQERFRTIT--------TAYYRGAMGIILVYDVTDERTF-TNIK---QWFKTVNEHANDEA 126 (213)
T ss_dssp -------TEEEEEEEECCTTGGGGTCCC--------HHHHTTCSEEEEEEETTCHHHH-HTHH---HHHHHHHHHTTTCS
T ss_pred -------CEEEEEEEEeCCCcHHHHHHH--------HHHhccCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCC
Confidence 112457899999954321111 1112357899999999865432 1110 012222222 34
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+.++|+||+|+..... ..+......+..+ .+++ +|++.+.++++++..+.
T Consensus 127 piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 127 QLLLVGNKSDMETRVV---TADQGEALAKELG--IPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp EEEEEEECTTCSSCCS---CHHHHHHHHHHHT--CCEEECBTTTTBSSHHHHHHHH
T ss_pred CEEEEEECCCCccccc---CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 6789999999954322 2344444444443 2444 79999999998887653
No 150
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.13 E-value=5.1e-11 Score=108.41 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=63.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~ 198 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... ......+++.+ .++|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~--------~~~~~aD~~ilVvDa~~g~~~qt~~-----~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMA--------TGASTCDLAIILVDARYGVQTQTRR-----HSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHH--------HHHTTCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChHHHHHHHH--------HHHhhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEEcCcC
Confidence 45688999999654332221 1234579999999998753221110 12233444544 5778999999
Q ss_pred CCcCC--CcchHHHHHHHHHHhC---CCCEEE-EeecCCcChhhhhc
Q 025133 199 VSPER--SGDSLDELEKEIHEIN---SLAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 199 ~~~~~--~~~~l~~~~~~l~~~~---~~a~i~-~s~~~~~~~~~l~~ 239 (257)
.+.++ .....+++..+++.++ +..+++ +|++++.|+++++.
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 87421 1112344555555554 224555 78999998877543
No 151
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.12 E-value=4.4e-11 Score=103.97 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=82.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
-++++|.+|+|||||+++|+... .......++.+.+.+.. ...+
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~----~~~~~~~~~~Ti~~~~~-------------~~~~------------------- 48 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNY----SAFDTRRLGATIDVEHS-------------HLRF------------------- 48 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCC----CTGGGGGCCCCCSEEEE-------------EEEE-------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCccccCcCCccceEEE-------------EEEe-------------------
Confidence 47899999999999999998531 11122233432222211 0111
Q ss_pred HHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-----hhc
Q 025133 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFA 188 (257)
Q Consensus 114 ~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-----~~~ 188 (257)
.++..+.++||||.... .+..............+.+++|+|+.......+.. .+...+.++ ..|
T Consensus 49 ----~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~----~~~~~l~~l~~~~~~~p 117 (307)
T 3r7w_A 49 ----LGNMTLNLWDCGGQDVF---MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE----IFAKALKQLRKYSPDAK 117 (307)
T ss_dssp ----TTTEEEEEEEECCSHHH---HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHH----HHHHHHHHHHHHCTTCE
T ss_pred ----CCceEEEEEECCCcHHH---hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHH----HHHHHHHHHHHhCCCCe
Confidence 12345789999996432 11000000001123578999999998653221110 011222232 457
Q ss_pred CEEEEeCCCCCCcCCCc----chHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcC
Q 025133 189 DVVILNKVDLVSPERSG----DSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNC 240 (257)
Q Consensus 189 ~vivlNK~D~~~~~~~~----~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~ 240 (257)
.++|+||+|+.+.++.. ...+.+.+..+..+ |..+++ .|++. .++.+.+..
T Consensus 118 iilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~ 174 (307)
T 3r7w_A 118 IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQ 174 (307)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHH
T ss_pred EEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHH
Confidence 88899999998743321 11234444444433 235666 56666 555554443
No 152
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.11 E-value=1.9e-10 Score=103.78 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=62.9
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH---HHHhhhccCCChhHHHHHHhh-cCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL---FQIDKYRHLSSYPEAIHQIAF-ADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~---~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~ 196 (257)
..+.|+||||.. .+... .......+|.+++|+|+.... +.... ...+..++. +.++++||+
T Consensus 81 ~~i~iiDtPGh~---~f~~~-----~~~~~~~~D~~ilVvda~~g~~~~qt~e~-------l~~~~~l~~~~iivv~NK~ 145 (408)
T 1s0u_A 81 RRVSFVDSPGHE---TLMAT-----MLSGASLMDGAILVIAANEPCPQPQTKEH-------LMALEILGIDKIIIVQNKI 145 (408)
T ss_dssp EEEEEEECSSHH---HHHHH-----HHTTCSCCSEEEEEEETTSCSSCHHHHHH-------HHHHHHTTCCCEEEEEECT
T ss_pred cEEEEEECCCHH---HHHHH-----HHHhHhhCCEEEEEEECCCCCCCchhHHH-------HHHHHHcCCCeEEEEEEcc
Confidence 458899999943 22221 123345689999999998532 11111 122334443 467899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhC-CCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEIN-SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~-~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+.+.++.....+++.+.++... ...+++ .|++++.++++|++.+.
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 146 DLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp TSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99986654345667777766532 234555 79999999999888764
No 153
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.11 E-value=2.2e-11 Score=110.05 Aligned_cols=160 Identities=21% Similarity=0.198 Sum_probs=89.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
+.++++|++|||||||++.|....+ .+...+.++...... ...+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-----~i~~~~ftTl~p~~G-------------~V~~------------------ 201 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-----KIAPYPFTTLSPNLG-------------VVEV------------------ 201 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-----EECCCTTCSSCCEEE-------------EEEC------------------
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-----cccCcccceecceee-------------EEEe------------------
Confidence 3589999999999999999985422 223333221111000 0010
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc-chHHHHhhhccCCChhHHH--HHHhhcC
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAI--HQIAFAD 189 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~-~~~~~~~~~~~~~~~~~~~--~ql~~~~ 189 (257)
.....+.+.||||+.+.......+. ...+.+..+++.+++++|.. .....+.... .....+ .....|.
T Consensus 202 -----~~~~~~~l~DtpGli~~a~~~~~L~-~~fl~~~era~~lL~vvDls~~~~~~ls~g~---~el~~la~aL~~~P~ 272 (416)
T 1udx_A 202 -----SEEERFTLADIPGIIEGASEGKGLG-LEFLRHIARTRVLLYVLDAADEPLKTLETLR---KEVGAYDPALLRRPS 272 (416)
T ss_dssp -----SSSCEEEEEECCCCCCCGGGSCCSC-HHHHHHHTSSSEEEEEEETTSCHHHHHHHHH---HHHHHHCHHHHHSCE
T ss_pred -----cCcceEEEEeccccccchhhhhhhh-HHHHHHHHHHHhhhEEeCCccCCHHHHHHHH---HHHHHHhHHhhcCCE
Confidence 1124578999999865321110010 01122344678999999996 2222211110 000111 1235789
Q ss_pred EEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhhhcCcc
Q 025133 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 190 vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
++++||+|+... + .+..+.+.++..+ ..-+++|+.++.++++++..+.
T Consensus 273 ILVlNKlDl~~~-~---~~~~l~~~l~~~g-~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 273 LVALNKVDLLEE-E---AVKALADALAREG-LAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp EEEEECCTTSCH-H---HHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEECCChhhH-H---HHHHHHHHHHhcC-CeEEEEECCCccCHHHHHHHHH
Confidence 999999999875 2 3455555554322 2335589999999998887763
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.11 E-value=5.3e-11 Score=107.50 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=65.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHHhh-cCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~ 198 (257)
..+.|+||||..+ +... .+.....+|.+++|+|+.... ...... ....+..++. +.++++||+|+
T Consensus 83 ~~i~iiDtPGh~~---f~~~-----~~~~~~~~D~~ilVvda~~g~~~~qt~e-----~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEA---LMTT-----MLAGASLMDGAILVIAANEPCPRPQTRE-----HLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHH---HHHH-----HHHCGGGCSEEEEEEETTSCSSCHHHHH-----HHHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHH---HHHH-----HHhhhhhCCEEEEEEECCCCCCChhHHH-----HHHHHHHcCCCcEEEEEECccC
Confidence 4588999999532 2221 122344679999999998642 111110 1123344454 45678999999
Q ss_pred CCcCCCcchHHHHHHHHHHh-CCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGDSLDELEKEIHEI-NSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~-~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+.++....++++.++++.. ....+++ .|++++.++++|++.+.
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 195 (410)
T 1kk1_A 150 VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE 195 (410)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 98643222345555555432 1234555 79999999999988764
No 155
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.11 E-value=5e-11 Score=96.12 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=62.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH----HhhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~ 196 (257)
..+.|+||||... ....... ....+.+++|+|+........ .. .+...+.+ ...|.++|+||+
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~--------~~~~d~iilv~D~~~~~s~~~-~~---~~~~~i~~~~~~~~~piilv~NK~ 142 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGH--------MRWGEGFVLVYDITDRGSFEE-VL---PLKNILDEIKKPKNVTLILVGNKA 142 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHH--------HHHCSEEEEEEETTCHHHHHT-HH---HHHHHHHHHHTTSCCCEEEEEECG
T ss_pred EEEEEEECCCCCc-ccchhhh--------hccCCEEEEEEECcCHHHHHH-HH---HHHHHHHHhhCCCCCcEEEEEECc
Confidence 4577999999876 2222211 224689999999986543211 10 01112222 134678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCc-ChhhhhcCc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQV-DLSEVLNCR 241 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~-~~~~l~~~~ 241 (257)
|+.+..+. ..+......+..+ .+++ .|++.+. ++++++..+
T Consensus 143 Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~~gi~~l~~~l 185 (196)
T 2atv_A 143 DLDHSRQV--STEEGEKLATELA--CAFYECSACTGEGNITEIFYEL 185 (196)
T ss_dssp GGGGGCCS--CHHHHHHHHHHHT--SEEEECCTTTCTTCHHHHHHHH
T ss_pred cccccccc--CHHHHHHHHHHhC--CeEEEECCCcCCcCHHHHHHHH
Confidence 99875332 2344444444443 4555 7899999 999988765
No 156
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.10 E-value=1.1e-09 Score=99.24 Aligned_cols=150 Identities=19% Similarity=0.240 Sum_probs=83.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|++||||||++.+|... ..|+++.++..|... .+....+... ...++.+ .... ...+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r-~~a~eqL~~~~~~~gv~~---~~~~-------~~~dp 164 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR-PAAYDQLLQLGNQIGVQV---YGEP-------NNQNP 164 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC-HHHHHHHHHHHHTTTCCE---ECCT-------TCSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc-hhHHHHHHHHHHhcCCce---eecc-------ccCCH
Confidence 4568999999999999999999753 458899999988654 2111111100 0011100 0000 01111
Q ss_pred HHHHHHHHHh--cCCCCEEEEecCCCCC---cHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 108 VQALEQLVQR--KERLDHILLETTGLAN---PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 108 ~~~l~~~~~~--~~~~~~ilIDt~G~~~---~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
.......+.. ..++|++||||||... ...+...+. .+......+.+++|+|+........ ....+
T Consensus 165 ~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~---~i~~~~~pd~vlLVlDa~~gq~a~~-------~a~~f 234 (433)
T 3kl4_A 165 IEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMK---EMYDVLKPDDVILVIDASIGQKAYD-------LASRF 234 (433)
T ss_dssp HHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGGHH-------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHH---HHHHhhCCcceEEEEeCccchHHHH-------HHHHH
Confidence 1111112211 3479999999999533 222332221 1122234578999999987643322 12233
Q ss_pred HHHhhcCEEEEeCCCCCCc
Q 025133 183 HQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~ 201 (257)
...-....+|+||+|....
T Consensus 235 ~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 235 HQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp HHHCSSEEEEEECGGGCSC
T ss_pred hcccCCcEEEEeccccccc
Confidence 3333567899999998754
No 157
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.10 E-value=1e-10 Score=105.71 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=34.5
Q ss_pred EEEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++++.+.|+.+..+.+..+.+ +|+|++|+|||||+|.|+.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I-~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL-MVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE-EEECCTTSSHHHHHHHHTT
T ss_pred cEEEEecceeECCEEEecCCCEEE-EEECCCCCcHHHHHHHHhC
Confidence 588999999999888888777776 9999999999999999985
No 158
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.09 E-value=1.6e-11 Score=117.75 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=42.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
.++.||||||+........ ........+|.+++|+|+.......+... +...+.....+.++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~-----~~~~~i~~aD~vL~Vvda~~~~s~~e~~~----l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNE-----LSLGYVNNCHAILFVMRASQPCTLGERRY----LENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHH-----HHTHHHHSSSEEEEEEETTSTTCHHHHHH----HHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHH-----HHHHHHHhCCEEEEEEeCCCccchhHHHH----HHHHHHhhCCCEEEEEECccccc
Confidence 4689999999765332111 11122345799999999976433211100 11111222456789999999976
Q ss_pred c
Q 025133 201 P 201 (257)
Q Consensus 201 ~ 201 (257)
.
T Consensus 245 ~ 245 (695)
T 2j69_A 245 E 245 (695)
T ss_dssp G
T ss_pred c
Confidence 5
No 159
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.09 E-value=2.9e-10 Score=93.02 Aligned_cols=119 Identities=15% Similarity=0.153 Sum_probs=67.3
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
.+.+-++++|++|+|||||+++|+...... .+....++. ..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~--~~~~~~~~~--~~~---------------------------------- 51 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPLS--AAD---------------------------------- 51 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCC--BCCCSSCEE--ETT----------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC--eeeecCceE--EEE----------------------------------
Confidence 456789999999999999999998632110 000111110 000
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEecc-ch--HHHHhhhccCCChhHHHHH--
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK-NL--LFQIDKYRHLSSYPEAIHQ-- 184 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~-~~--~~~~~~~~~~~~~~~~~~q-- 184 (257)
.....+.++||||..........+.. .....++.+++|+|+. .. ....... +...+..
T Consensus 52 --------~~~~~~~l~Dt~G~~~~~~~~~~~~~----~~~~~~~~~i~v~D~~~~~~~~~~~~~~-----~~~~~~~~~ 114 (218)
T 1nrj_B 52 --------YDGSGVTLVDFPGHVKLRYKLSDYLK----TRAKFVKGLIFMVDSTVDPKKLTTTAEF-----LVDILSITE 114 (218)
T ss_dssp --------GGGSSCEEEECCCCGGGTHHHHHHHH----HHGGGEEEEEEEEETTSCTTCCHHHHHH-----HHHHHHHHH
T ss_pred --------eeCceEEEEECCCcHHHHHHHHHHHH----hccccCCEEEEEEECCCChHHHHHHHHH-----HHHHHhccc
Confidence 02356889999998655443322210 1112368899999998 21 1111110 1122221
Q ss_pred ----HhhcCEEEEeCCCCCCcCC
Q 025133 185 ----IAFADVVILNKVDLVSPER 203 (257)
Q Consensus 185 ----l~~~~vivlNK~D~~~~~~ 203 (257)
-..|.++|+||+|+.+...
T Consensus 115 ~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 115 SSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp HHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccccCCCCEEEEEEchHhcccCC
Confidence 1356788999999988755
No 160
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.08 E-value=3.1e-10 Score=103.25 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=64.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHh--hhccCCChhHHHHHHhhc-CEEEEeC
Q 025133 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--KYRHLSSYPEAIHQIAFA-DVVILNK 195 (257)
Q Consensus 119 ~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~--~~~~~~~~~~~~~ql~~~-~vivlNK 195 (257)
.+..+.|+||||..+...... .....+|.+++|+|+........ ...+.........+++.+ .++++||
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~--------~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK 153 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMI--------TGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 153 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHH--------HTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred CCeEEEEEECCCcHHHHHHHH--------hhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence 356799999999876543322 12346799999999987421100 000000011222344544 6788999
Q ss_pred CCCCCcCC----CcchHHHHHHHHHHhC--C-CCEEE-EeecCCcChhhhh
Q 025133 196 VDLVSPER----SGDSLDELEKEIHEIN--S-LAHVI-RSVRCQVDLSEVL 238 (257)
Q Consensus 196 ~D~~~~~~----~~~~l~~~~~~l~~~~--~-~a~i~-~s~~~~~~~~~l~ 238 (257)
+|+.+... .....+++...++... + ..+++ +|++++.++.++.
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 99987321 1123455666666544 2 24565 7899988887543
No 161
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.08 E-value=3.9e-10 Score=90.39 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=59.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH------hhcCEEEEe
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql------~~~~vivlN 194 (257)
..+.|+||+|......+.. . ....+.+++|+|......... .. .+...+.+. ..+.++|.|
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~------~---~~~~~~~ilv~d~~~~~s~~~-~~---~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 69 VHLRVMDTADLDTPRNCER------Y---LNWAHAFLVVYSVDSRQSFDS-SS---SYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp EEEEEEECCC---CCCTHH------H---HTTCSEEEEEEETTCHHHHHH-HH---HHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEEEEECCCCCcchhHHH------H---HhhCCEEEEEEECCCHHHHHH-HH---HHHHHHHHHhhccCCCCCEEEEEE
Confidence 4567999999654322211 1 123688999999986433211 10 011222221 456788999
Q ss_pred CCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-Eee-cCCcChhhhhcCc
Q 025133 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVI-RSV-RCQVDLSEVLNCR 241 (257)
Q Consensus 195 K~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~-~~~~~~~~l~~~~ 241 (257)
|+|+.+..+. ..++..++.+..+ ..++ +|+ +++.++++++..+
T Consensus 136 K~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 136 KLDMAQYRQV--TKAEGVALAGRFG--CLFFEVSACLDFEHVQHVFHEA 180 (187)
T ss_dssp CGGGGGGCSS--CHHHHHHHHHHHT--CEEEECCSSSCSHHHHHHHHHH
T ss_pred CcchhhcCcc--CHHHHHHHHHHcC--CcEEEEeecCccccHHHHHHHH
Confidence 9999764432 2344555555554 3566 678 7888999888654
No 162
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.08 E-value=6.3e-12 Score=116.88 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=86.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~ 110 (257)
+.|.+++.|.+|+|||||+++|.... +. ....+|.+..+.... ..+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~----~~-~~~~~giT~~i~~~~-------------v~~---------------- 48 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ----VA-AMEAGGITQHIGAFL-------------VSL---------------- 48 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH----HH-HSSSCCBCCCTTSCC-------------BCS----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----cc-cccCCceeEEEeEEE-------------EEe----------------
Confidence 46889999999999999999998421 00 001122111110000 000
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCE
Q 025133 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (257)
Q Consensus 111 l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~v 190 (257)
..+..+.|+||||....... ........|.+++|+|+.......... ..........|.+
T Consensus 49 -------~~g~~i~~iDTPGhe~f~~~--------~~~~~~~aD~vILVVDa~dg~~~qt~e-----~l~~~~~~~vPiI 108 (537)
T 3izy_P 49 -------PSGEKITFLDTPGHAAFSAM--------RARGTQVTDIVILVVAADDGVMKQTVE-----SIQHAKDAHVPIV 108 (537)
T ss_dssp -------SCSSCCBCEECSSSCCTTTS--------BBSSSBSBSSCEEECBSSSCCCHHHHH-----HHHHHHTTTCCEE
T ss_pred -------CCCCEEEEEECCChHHHHHH--------HHHHHccCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCcEE
Confidence 11235779999995432211 112345589999999998744332211 1222334456788
Q ss_pred EEEeCCCCCCcCC--CcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 191 VILNKVDLVSPER--SGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 191 ivlNK~D~~~~~~--~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+++||+|+.+... ....+..............+++ +|++++.|+++++..+
T Consensus 109 VViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 109 LAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp ECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred EEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 8999999975432 1111111110011111233555 7999999999988765
No 163
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.08 E-value=1.2e-10 Score=94.95 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=64.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......+... ....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPL--------SYRGADIFVLAFSLISKASYENVLK---KWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp EEEEEECCCCCCCCCC--CG--------GGTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEECCCcHHHHHHHHh--------hccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEeCHHh
Confidence 45779999997544322211 1235789999999986543222100 122233332 4577899999998
Q ss_pred CCcCCC------cchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERS------GDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~------~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+..+. .-..+......+..+- .+++ .|++++.|+++++..+.
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 126 RDDKGYLADHTNVITSTQGEELRKQIGA-AAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp HTCHHHHHTCSSCCCHHHHHHHHHHHTC-SEEEECCTTTCTTHHHHHHHHH
T ss_pred hhCccccccccCCCCHHHHHHHHHHcCC-ceEEEccCCCCCCHHHHHHHHH
Confidence 764310 0013444444444432 2455 79999999998887663
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.07 E-value=2.2e-10 Score=106.51 Aligned_cols=70 Identities=20% Similarity=0.094 Sum_probs=45.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... +.........|.++++||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~--------~~l~~aD~allVvDa~~g~~~~t~~-----~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTY--------RTLTAVDSALMVIDAAKGVEPRTIK-----LMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHH--------HGGGGCSEEEEEEETTTCSCHHHHH-----HHHHHHTTTCCEEEEEECTTSC
T ss_pred CEEEEEEECCCchhHHHHHH--------HHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEeCCCCc
Confidence 46688999999876443322 1233579999999998754332211 1223344456889999999997
Q ss_pred CcC
Q 025133 200 SPE 202 (257)
Q Consensus 200 ~~~ 202 (257)
...
T Consensus 148 ~~~ 150 (528)
T 3tr5_A 148 TRP 150 (528)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.06 E-value=3.9e-11 Score=108.19 Aligned_cols=101 Identities=20% Similarity=0.139 Sum_probs=59.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc-CEEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~-~vivlNK~D~ 198 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... ....+.+...+ .++++||+|+
T Consensus 74 ~~~~~iiDtpG~~~f~~~~~--------~~~~~aD~~ilVvda~~g~~~qt~~-----~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 74 KRHYSHVDCPGHADYIKNMI--------TGAAQMDGAILVVSAADGPMPQTRE-----HILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp SCEEEEEECCCSGGGHHHHH--------HHHTTCSSEEEEEETTTCCCHHHHH-----HHHHHHHTTCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHHHHHH--------HHHHHCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEEECccc
Confidence 46789999999765432221 1233579999999998653221110 22334455667 4678999999
Q ss_pred CCcCCC-cchHHHHHHHHHHhCC---CCEEE-EeecCCcC
Q 025133 199 VSPERS-GDSLDELEKEIHEINS---LAHVI-RSVRCQVD 233 (257)
Q Consensus 199 ~~~~~~-~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~ 233 (257)
.+..+. ....+++...++.... ..+++ .|++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 141 VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 853211 1122345566665542 24555 78888765
No 166
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.05 E-value=5.8e-10 Score=94.96 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
....++++|.+|+|||||+|+|+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999995
No 167
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.05 E-value=4.9e-11 Score=106.05 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=30.7
Q ss_pred EEEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
-+.+.++...++.+....+..+. ++|+|.+|+|||||+|.|+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~-I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFT-LMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEEC-EEECCCTTSCHHHHHHHHTT
T ss_pred eEEeccchHHhCCeeecCCCCEE-EEEEcCCCCCHHHHHHHHhC
Confidence 36778888888776654444433 58899999999999999874
No 168
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.63 E-value=1.8e-11 Score=99.42 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=60.5
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||.......... ....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~s~~~~~~---~~~~~l~~~~~~~piilv~NK~Dl 146 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPL--------SYPQTDVFLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL 146 (204)
Confidence 44669999996543322211 1345789999999876432211100 112222222 5678999999999
Q ss_pred CCcCCCcc----------hHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 199 VSPERSGD----------SLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~~~----------~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.+...... ..+......+..+ ..+++ +|++++.|+++++..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-AVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 86432100 1112222222221 11344 79999999999887763
No 169
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.05 E-value=2.6e-10 Score=103.59 Aligned_cols=145 Identities=18% Similarity=0.196 Sum_probs=82.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccch--
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKH-- 105 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~-- 105 (257)
...+++|+|++|+||||++++|... ..|++++++..|+......+ .+-.. ...++.+ .... + +.++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~-qL~~~~~~~gv~v---~~~~-~----~~~dp~ 168 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE-QLKQLAEKIHVPI---YGDE-T----RTKSPV 168 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGG-SSHHHHHHSSCCE---ECCS-S----SCCSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHH-HHHHhhhccCcce---EecC-C----CCCCHH
Confidence 3458999999999999999999763 34789999999876411111 11000 0000100 0000 0 1111
Q ss_pred hH-HHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHH
Q 025133 106 SL-VQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (257)
Q Consensus 106 ~~-~~~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (257)
.+ ...+. ...+++++||||||..... .+...+. .+......+.+++|+|+........ ...
T Consensus 169 ~i~~~~l~----~~~~~D~vIIDT~G~~~~~~~l~~~l~---~i~~~~~~d~vllVvda~~g~~~~~----------~~~ 231 (432)
T 2v3c_C 169 DIVKEGME----KFKKADVLIIDTAGRHKEEKGLLEEMK---QIKEITNPDEIILVIDGTIGQQAGI----------QAK 231 (432)
T ss_dssp TTHHHHHH----TTSSCSEEEEECCCSCSSHHHHHHHHH---HTTSSSCCSEEEEEEEGGGGGGHHH----------HHH
T ss_pred HHHHHHHH----HhhCCCEEEEcCCCCccccHHHHHHHH---HHHHHhcCcceeEEeeccccHHHHH----------HHH
Confidence 11 22222 2367899999999977543 2333221 1233446889999999987643211 222
Q ss_pred HHh--h-c-CEEEEeCCCCCCc
Q 025133 184 QIA--F-A-DVVILNKVDLVSP 201 (257)
Q Consensus 184 ql~--~-~-~vivlNK~D~~~~ 201 (257)
.+. . + ..+|+||+|....
T Consensus 232 ~~~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 232 AFKEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp HHHTTSCSCEEEEEECSSSCST
T ss_pred HHhhcccCCeEEEEeCCCCccc
Confidence 232 2 4 6889999998643
No 170
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.03 E-value=3.2e-10 Score=90.44 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.++||||......... ......+.+++|+|+........... .+...+.+. ..|.++|.||+|+
T Consensus 55 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl 123 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNVRP--------LSYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL 123 (184)
T ss_dssp EEEEEEEECCSGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEECCCChhhhhhHH--------hhcCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEEEcchh
Confidence 4578999999643322111 11235789999999986543221100 122222222 3567889999999
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-Eeec-CCcChhhhhcCc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVR-CQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~-~~~~~~~l~~~~ 241 (257)
.+.. ...-..++...+.+..+ ..+++ .|++ ++.++++++..+
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~gi~~l~~~i 177 (184)
T 1m7b_A 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVA 177 (184)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEEEECBTTTBHHHHHHHHHHH
T ss_pred hcchhhHhhhhhcccCCCCHHHHHHHHHHcC-CcEEEEeeecCCCcCHHHHHHHH
Confidence 7531 01112344555555544 23555 6887 578899887654
No 171
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.03 E-value=3.1e-10 Score=105.83 Aligned_cols=105 Identities=10% Similarity=0.077 Sum_probs=60.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh--hcCEEEEeCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVD 197 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~--~~~vivlNK~D 197 (257)
...+.++||||..........+ ....+.+++|+|++..... .. +...+.+.. .|.++|.||+|
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~--------l~~~d~ii~V~D~s~~~~~-~~------~~~~l~~~~~~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFF--------MTRSSVYMLLLDSRTDSNK-HY------WLRHIEKYGGKSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHH--------HHSSEEEEEEECGGGGGGH-HH------HHHHHHHHSSSCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHHHHHHHHH--------ccCCcEEEEEEeCCCchhH-HH------HHHHHHHhCCCCCEEEEEECCC
Confidence 4678999999954322211111 1237899999999875221 11 222233332 57899999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
+.+..+. ..+.++......+ .+++ +|++++.|+++++..+..
T Consensus 162 l~~~~~v--~~~~~~~~~~~~~--~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 162 ENPSYNI--EQKKINERFPAIE--NRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp TCTTCCC--CHHHHHHHCGGGT--TCEEECCC-----CTTHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHhcC--CceEEEecCcccCHHHHHHHHHH
Confidence 9875442 2345555554443 2344 899999999988877643
No 172
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.03 E-value=1.3e-09 Score=89.59 Aligned_cols=107 Identities=16% Similarity=0.079 Sum_probs=57.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~ 196 (257)
..++++||+|......... ..+ ....+.+++|+|......... .. .+...+.+. ..|.++|.||+
T Consensus 87 ~~l~~~Dt~g~~~~~~~l~-----~~~--~~~a~~~ilVydvt~~~sf~~-~~---~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 87 ATIILLDMWENKGENEWLH-----DHC--MQVGDAYLIVYSITDRASFEK-AS---ELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEEECCTTTTHHHHHHH-----HCC--CCCCSEEEEEEETTCHHHHHH-HH---HHHHHHHTSGGGTTSCEEEEEECT
T ss_pred eEEEEeecCCCcchhhhHH-----HHH--HhhCCEEEEEEECCCHHHHHH-HH---HHHHHHHHHhCCCCCcEEEEEECh
Confidence 3467899999754222221 111 123567788888765332111 00 011112211 34678899999
Q ss_pred CCCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 197 DLVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
|+....+. ..++...+....+ ++++ +|++++.++++++..+.
T Consensus 156 DL~~~r~v--~~~e~~~~a~~~~--~~~~e~SAk~g~~v~elf~~l~ 198 (211)
T 2g3y_A 156 DLVRCREV--SVSEGRACAVVFD--CKFIETSAAVQHNVKELFEGIV 198 (211)
T ss_dssp TCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHH
T ss_pred HHhcCceE--eHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 99764332 1223233223332 3555 79999999999987653
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.01 E-value=1.9e-10 Score=105.59 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=60.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHH--HhhhccCCChhHHHHHHhhc-CEEEEeCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFA-DVVILNKV 196 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~ql~~~-~vivlNK~ 196 (257)
+..+.|+||||..+.... .......+|.+++|+|+...... +....+.........+++.+ .++++||+
T Consensus 120 ~~~~~iiDtPGh~~f~~~--------~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~ 191 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTN--------MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM 191 (467)
T ss_dssp SEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred CeEEEEEECCCcHHHHHH--------HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECc
Confidence 456889999996543221 12234568999999999876421 00000000011223445556 57789999
Q ss_pred CCCCcC----CCcchHHHHHHHHHHh-CC----CCEEE-EeecCCcChhhhhc
Q 025133 197 DLVSPE----RSGDSLDELEKEIHEI-NS----LAHVI-RSVRCQVDLSEVLN 239 (257)
Q Consensus 197 D~~~~~----~~~~~l~~~~~~l~~~-~~----~a~i~-~s~~~~~~~~~l~~ 239 (257)
|+.+.+ ......+++...++.. .- ..+++ .|++++.++.+++.
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 996532 1112334566666654 21 34555 79999999988764
No 174
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.01 E-value=4e-10 Score=92.43 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=64.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||+|......+.. . ....++.+++|+|+........... .+...+.+. ..|.++|.||+|+
T Consensus 75 ~~l~i~Dt~G~~~~~~~~~-----~---~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl 143 (214)
T 3q3j_B 75 VELSLWDTSGSPYYDNVRP-----L---CYSDSDAVLLCFDISRPETVDSALK---KWRTEILDYCPSTRVLLIGCKTDL 143 (214)
T ss_dssp EEEEEEEECCSGGGTTTGG-----G---GCTTCSEEEEEEETTCTHHHHHHHT---HHHHHHHHHCTTSEEEEEEECGGG
T ss_pred EEEEEEECCCCHhHHHHHH-----H---HcCCCeEEEEEEECcCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 4577999999643322211 1 1234789999999987544322110 122223332 4567889999999
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-EeecCCcC-hhhhhcCcc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVRCQVD-LSEVLNCRA 242 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~-~~~l~~~~~ 242 (257)
.+.. ......+....+.+..+- ..++ +|++++.+ +++++..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~SA~~g~g~v~~lf~~l~ 198 (214)
T 3q3j_B 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGA-EIYLEGSAFTSEKSIHSIFRTAS 198 (214)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC-SEEEECCTTTCHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccCccCHHHHHHHHHHcCC-CEEEEeccCCCcccHHHHHHHHH
Confidence 7530 011224455555555542 2455 78999998 998887663
No 175
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.01 E-value=4.9e-11 Score=110.00 Aligned_cols=156 Identities=22% Similarity=0.237 Sum_probs=86.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC-CCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
+.|.+++.|..|+|||||+++|.... +...+ .|.+..+....+ .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~------v~~~e~~GIT~~i~~~~v-------------~---------------- 47 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK------VASGEAGGITQHIGAYHV-------------E---------------- 47 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH------HSBTTBCCCCCCSSCCCC-------------C----------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC------CccccCCCeeEeEEEEEE-------------E----------------
Confidence 56899999999999999999998520 00011 111000000000 0
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~ 189 (257)
..+..+.|+||||....... .......+|.+++|+|+.......... ..........|.
T Consensus 48 --------~~~~~i~~iDTPGhe~f~~~--------~~~~~~~aD~aILVVda~~g~~~qT~e-----~l~~~~~~~vPi 106 (501)
T 1zo1_I 48 --------TENGMITFLDTPGHAAFTSM--------RARGAQATDIVVLVVAADDGVMPQTIE-----AIQHAKAAQVPV 106 (501)
T ss_dssp --------TTSSCCCEECCCTTTCCTTS--------BCSSSBSCSSEEEEEETTTBSCTTTHH-----HHHHHHHTTCCE
T ss_pred --------ECCEEEEEEECCCcHHHHHH--------HHHHHhhCCEEEEEeecccCccHHHHH-----HHHHHHhcCceE
Confidence 12345779999996443211 123345689999999997643221110 112233445688
Q ss_pred EEEEeCCCCCCcC--CCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 190 VVILNKVDLVSPE--RSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 190 vivlNK~D~~~~~--~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
++++||+|+.+.. +....+.........+....+++ .|++++.|+++++..+.
T Consensus 107 IVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~ 162 (501)
T 1zo1_I 107 VVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL 162 (501)
T ss_dssp EEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTT
T ss_pred EEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhh
Confidence 9999999997532 11010000000001111224565 79999999999988774
No 176
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.01 E-value=4.4e-10 Score=91.72 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=61.2
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... . ....++.+++|+|+........... .+...+.+. ..+.++|.||+|+
T Consensus 76 ~~l~i~Dt~G~~~~~~~~~-----~---~~~~~d~~ilv~D~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 76 IELSLWDTSGSPYYDNVRP-----L---SYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp EEEEEEEECCSGGGTTTGG-----G---GCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEeCCCcHhhhHHHH-----h---hccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEEechhh
Confidence 4578999999643322111 1 1235789999999987543221100 122222222 3467889999999
Q ss_pred CCcC----------CCcchHHHHHHHHHHhCCCCEEE-Eeec-CCcChhhhhcCc
Q 025133 199 VSPE----------RSGDSLDELEKEIHEINSLAHVI-RSVR-CQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~----------~~~~~l~~~~~~l~~~~~~a~i~-~s~~-~~~~~~~l~~~~ 241 (257)
.+.. ...-..++...+.+..+ ...++ .|++ ++.++++++..+
T Consensus 145 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk~~~~gv~~lf~~l 198 (205)
T 1gwn_A 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVA 198 (205)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEEEECCTTTCHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccCCCCHHHHHHHHHHcC-CCEEEEeeeccCCcCHHHHHHHH
Confidence 7531 01112344555555544 23455 6887 578899887654
No 177
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.00 E-value=8.2e-10 Score=89.07 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=59.1
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH-HHHhhhccCCChhHHHHHH-----hhcCEEEE
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQI-----AFADVVIL 193 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~ql-----~~~~vivl 193 (257)
...+.|+||+|.......... .. .....++.+++|+|+.... ..... +...+.++ ..+.++|.
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~--~~---~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~l~~~~~~~~~~piilv~ 136 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFD--YE---MIFRGTGALIYVIDAQDDYMEALTR------LHITVSKAYKVNPDMNFEVFI 136 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCC--HH---HHHHTCSEEEEEEETTSCCHHHHHH------HHHHHHHHHHHCTTCEEEEEE
T ss_pred eeEEEEEECCCCHHHHhhhhh--cc---cccccCCEEEEEEECCCchHHHHHH------HHHHHHHHHhcCCCCcEEEEE
Confidence 366889999996542211100 00 0122478999999998741 11121 12233332 45678899
Q ss_pred eCCCCCCcCCCcchHHHH----HHHHHHh---CCCCEEE-EeecCCcChhhhhcCc
Q 025133 194 NKVDLVSPERSGDSLDEL----EKEIHEI---NSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 194 NK~D~~~~~~~~~~l~~~----~~~l~~~---~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
||+|+.+.+........+ ...+.+. .....++ .|++. .++++++..+
T Consensus 137 nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred eccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 999998753210111111 1222221 2234555 78888 9999887654
No 178
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.00 E-value=4.6e-10 Score=105.74 Aligned_cols=109 Identities=20% Similarity=0.140 Sum_probs=63.8
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
+.+.|+||||........ ......+|.+++|+|+.......... ....+.....|.++++||+|+.+
T Consensus 70 ~~i~liDTPGhe~F~~~~--------~r~~~~aD~aILVvDa~~Gv~~qT~e-----~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLR--------KRGGALADLAILIVDINEGFKPQTQE-----ALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CEEEEECCCTTSCCTTSB--------CSSSBSCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGST
T ss_pred CCEEEEECCCcHHHHHHH--------HHHHhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCeEEEEeccccccc
Confidence 458999999975432211 12234589999999999743222211 12233445668899999999975
Q ss_pred cCCC--------------c-------chHHHHHHHHHHhC-------------CCCEEE-EeecCCcChhhhhcCcc
Q 025133 201 PERS--------------G-------DSLDELEKEIHEIN-------------SLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 201 ~~~~--------------~-------~~l~~~~~~l~~~~-------------~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
.... . +.+.++...+.+.. ...+++ .|++++.|+++|++.+.
T Consensus 137 ~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~ 213 (594)
T 1g7s_A 137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM 213 (594)
T ss_dssp TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHH
Confidence 3110 0 01112233333221 122455 79999999999887763
No 179
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.00 E-value=1.9e-10 Score=103.46 Aligned_cols=109 Identities=20% Similarity=0.186 Sum_probs=64.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+..+.|+||||..+..... ......+|.+++|+|+.......... ....+.+...+. ++++||+|+
T Consensus 65 ~~~~~iiDtpG~~~f~~~~--------~~~~~~aD~~ilVvda~~g~~~qt~e-----~l~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 65 ARHYAHTDCPGHADYVKNM--------ITGTAPLDGCILVVAANDGPMPQTRE-----HLLLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp SCEEEEEECSSHHHHHHHH--------HHTSSCCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHHHHH--------HhhHhhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCeEEEEEECccc
Confidence 4678999999964322211 12234689999999998743221110 122334556675 688999999
Q ss_pred CCcCCC-cchHHHHHHHHHHhCC---CCEEE-EeecCCcC----------hhhhhcCc
Q 025133 199 VSPERS-GDSLDELEKEIHEINS---LAHVI-RSVRCQVD----------LSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~-~~~l~~~~~~l~~~~~---~a~i~-~s~~~~~~----------~~~l~~~~ 241 (257)
.+.++. ....+++.+.++...- ..+++ .|++++.+ +.+|++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l 189 (397)
T 1d2e_A 132 VQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAV 189 (397)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHH
Confidence 863211 1122455666665542 24555 68877543 66777665
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.97 E-value=1.6e-09 Score=103.95 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=45.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... ....+.+...+.++|+||+|+.
T Consensus 74 ~~~i~liDTPG~~df~~~~~--------~~l~~aD~~llVvDa~~g~~~~~~~-----~~~~~~~~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVE--------RSLRVLDGAVTVLDAQSGVEPQTET-----VWRQATTYGVPRIVFVNKMDKL 140 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHH--------HHHHHCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCCEEEEEECTTST
T ss_pred CeeEEEEECcCCcchHHHHH--------HHHHHCCEEEEEECCCCCCcHHHHH-----HHHHHHHcCCCEEEEEECCCcc
Confidence 46789999999876433221 1123479999999998754332211 1223344567889999999998
Q ss_pred CcC
Q 025133 200 SPE 202 (257)
Q Consensus 200 ~~~ 202 (257)
..+
T Consensus 141 ~~~ 143 (693)
T 2xex_A 141 GAN 143 (693)
T ss_dssp TCC
T ss_pred ccc
Confidence 753
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.95 E-value=6.1e-10 Score=103.63 Aligned_cols=110 Identities=16% Similarity=0.085 Sum_probs=62.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+...... .....+|.+++|+|+.......... +.....+...+.++++||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~--------~~l~~aD~~IlVvDa~~g~~~~t~~-----~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTY--------RTLTAVDCCLMVIDAAKGVEDRTRK-----LMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHH--------HGGGGCSEEEEEEETTTCSCHHHHH-----HHHHHTTTTCCEEEEEECTTSC
T ss_pred CeEEEEEECCCChhHHHHHH--------HHHHHCCEEEEEEeCCccchHHHHH-----HHHHHHHcCCCEEEEEcCcCCc
Confidence 46788999999866433222 1223579999999998753322110 1222233456789999999998
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccC
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAY 243 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~ 243 (257)
..+. .+.++.++..+....-...+. .|+.++.|+.+++.....
T Consensus 148 ~~~~-~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~ 191 (529)
T 2h5e_A 148 IRDP-MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETY 191 (529)
T ss_dssp CSCH-HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEE
T ss_pred cccH-HHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHh
Confidence 7542 122334433332110001122 366777788877765533
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.95 E-value=6.1e-10 Score=98.77 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=31.7
Q ss_pred EEccccccccCc---ccCC--CcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 13 RIDETTHEFSNS---HEND--DVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 13 ~~~~~~~~~~~~---~~~~--~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++.+.++.. ..++ ...+|.++|+|.+|||||||+|+|+..
T Consensus 10 ~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 10 KIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp HTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345666666643 2232 358899999999999999999999963
No 183
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.95 E-value=1e-08 Score=88.62 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=87.7
Q ss_pred ccccccccCccc---CCCcceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCcee
Q 025133 15 DETTHEFSNSHE---NDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALV 88 (257)
Q Consensus 15 ~~~~~~~~~~~~---~~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~ 88 (257)
+++.+.|++... ....+..+++++|++|+||||++..|... ..++++.++..|+.. ......+... ...+..+
T Consensus 78 ~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r-~~a~~ql~~~~~~~~v~v 156 (297)
T 1j8m_F 78 DELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR-PAALEQLQQLGQQIGVPV 156 (297)
T ss_dssp HHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS-SHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-HHHHHHHHHHhccCCeEE
Confidence 556666765431 11223458899999999999999999753 348899999988654 1111110000 0001100
Q ss_pred eeeeecCCCceeeccchhHH-HHHHHHHHhcCCCCEEEEecCCCCC--cH-HHHHhcccccccccceeeeeEEEEEeccc
Q 025133 89 EEWVELANGCICCTVKHSLV-QALEQLVQRKERLDHILLETTGLAN--PA-PLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 89 ~~~~~l~~gcicc~~~~~~~-~~l~~~~~~~~~~~~ilIDt~G~~~--~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
..-..+ ..+.++. ..+..+. ..++|++||||||... .. .+...+. .+......+.+++|+|+..
T Consensus 157 ---~~~~~~----~~p~~~~~~~l~~~~--~~~~D~ViIDTpg~~~~~~~~~l~~el~---~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 157 ---YGEPGE----KDVVGIAKRGVEKFL--SEKMEIIIVDTAGRHGYGEEAALLEEMK---NIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp ---ECCTTC----CCHHHHHHHHHHHHH--HTTCSEEEEECCCSCCTTCHHHHHHHHH---HHHHHHCCSEEEEEEEGGG
T ss_pred ---EecCCC----CCHHHHHHHHHHHHH--hCCCCEEEEeCCCCcccccHHHHHHHHH---HHHHHhcCCEEEEEeeCCc
Confidence 000000 0112222 2232221 3679999999999766 32 2322111 1112335788999999976
Q ss_pred hHHHHhhhccCCChhHHHHHHh--hc-CEEEEeCCCCCC
Q 025133 165 LLFQIDKYRHLSSYPEAIHQIA--FA-DVVILNKVDLVS 200 (257)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~ql~--~~-~vivlNK~D~~~ 200 (257)
...... ...++. .+ ..+|+||+|...
T Consensus 225 g~~~~~----------~~~~~~~~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 225 GQKAYD----------LASKFNQASKIGTIIITKMDGTA 253 (297)
T ss_dssp GGGHHH----------HHHHHHHTCTTEEEEEECGGGCT
T ss_pred hHHHHH----------HHHHHHhhCCCCEEEEeCCCCCc
Confidence 432221 122222 34 578999999764
No 184
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.95 E-value=8.8e-10 Score=93.44 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...++++|.+|+|||||+|+|+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999995
No 185
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.95 E-value=1.1e-08 Score=84.29 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=64.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---hcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~---~~~vivlNK~D 197 (257)
..+.|.||+|......+.... ....+.+++|.|.......... . .+...+.+.. .|.++|.||+|
T Consensus 62 v~l~iwDtaGqe~~~~l~~~~--------~~~a~~~ilv~di~~~~Sf~~i-~---~~~~~i~~~~~~~~piilVgNK~D 129 (216)
T 4dkx_A 62 IRLQLWDTAGLERFRSLIPSY--------IRDSAAAVVVYDITNVNSFQQT-T---KWIDDVRTERGSDVIIMLVGNKTD 129 (216)
T ss_dssp EEEEEECCSCTTTCGGGHHHH--------HTTCSEEEEEEETTCHHHHHTH-H---HHHHHHHHHHTTSSEEEEEEECTT
T ss_pred EEEEEEECCCchhhhhHHHHH--------hccccEEEEEeecchhHHHHHH-H---HHHHHHHHhcCCCCeEEEEeeccc
Confidence 346689999976654443322 1246788999998865443221 0 0122222222 34577889999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.+..+. ..++..++.++.+ +..+ .|++++.|+++++..+
T Consensus 130 l~~~r~V--~~~e~~~~a~~~~--~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 130 LADKRQV--SIEEGERKAKELN--VMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp CGGGCCS--CHHHHHHHHHHHT--CEEEEEBTTTTBSHHHHHHHH
T ss_pred hHhcCcc--cHHHHhhHHHHhC--CeeEEEeCCCCcCHHHHHHHH
Confidence 9765442 2445555555554 4555 8999999999988765
No 186
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.94 E-value=1.6e-09 Score=102.05 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=65.3
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
+.+.|+||||..+....... ....+|.+++|+|+.......... ..........+.++++||+|+.+
T Consensus 73 ~~inliDTPGh~dF~~ev~r--------~l~~aD~aILVVDa~~gv~~qt~~-----~~~~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSR--------ALAACEGALLLIDASQGIEAQTVA-----NFWKAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHH--------HHHTCSEEEEEEETTTBCCHHHHH-----HHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCcHhHHHHHHH--------HHHhCCEEEEEEECCCCccHHHHH-----HHHHHHHCCCCEEEEEeccCccc
Confidence 45779999998765433221 123468999999998764322211 11122334567899999999987
Q ss_pred cCCCcchHHHHHHHHHHhCC---CCEEEEeecCCcChhhhhcCcc
Q 025133 201 PERSGDSLDELEKEIHEINS---LAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~~~~---~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.+ ...+...+.+... ...+..|++++.|++++++.+.
T Consensus 140 a~-----~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~ 179 (600)
T 2ywe_A 140 AD-----VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIV 179 (600)
T ss_dssp CC-----HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHH
T ss_pred cC-----HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHH
Confidence 53 2333444444322 1235589999999999988763
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.93 E-value=1.5e-09 Score=93.99 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=20.7
Q ss_pred ccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 15 DETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++|++.|+.+.++.+..+.+ +++|++|+|||||++.|..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp ----------------CEEE-EEEEETTSSHHHHHHHHHC
T ss_pred CCCcceECCEEEEcCCCEEE-EEECCCCCCHHHHHHHHhC
Confidence 47888998888888777776 8999999999999999874
No 188
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.93 E-value=6.9e-10 Score=96.40 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=63.6
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~ 198 (257)
..+.|+||||......... .....++.+++|+|+........... .+...+.+. ..|.++|+||+|+
T Consensus 203 ~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 203 VNLGLWDTAGLEDYDRLRP--------LSYPQTDVFLICFSLVSPASFHHVRA---KWYPEVRHHCPNTPIILVGTKLDL 271 (332)
T ss_dssp EEEEEEEECCCGGGTTTGG--------GGCTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTSCEEEEEECHHH
T ss_pred EEEEEEeCCCchhhhHHHH--------HhccCCCEEEEEEeCCCHHHHHHHHH---HHHHHHHhhCCCCcEEEEEEchhc
Confidence 3456999999654322111 11235789999999987544322100 022233333 5678999999999
Q ss_pred CCcCC----------CcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPER----------SGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~----------~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
.+... .....+....+.+..+. .+++ +|++++.|+++++..+
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECCTTTCTTHHHHHHHH
T ss_pred ccccchhhhccccccccccHHHHHHHHHHcCC-cEEEEecCCCCcCHHHHHHHH
Confidence 76421 01123344444444432 2455 7999999999988765
No 189
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.92 E-value=9.6e-11 Score=94.75 Aligned_cols=109 Identities=12% Similarity=0.138 Sum_probs=55.1
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH---hhcCEEEEeCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql---~~~~vivlNK~D 197 (257)
..+.|+||||....... .......++.+++|+|+......... . .+...+.+. ..+.++|+||+|
T Consensus 82 ~~~~i~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~p~ilv~nK~D 149 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTI--------TSSYYRGAHGIIVVYDVTDQESFNNV-K---QWLQEIDRYASENVNKLLVGNKCD 149 (199)
T ss_dssp EEEEEECCTTCTTCCCC--------SCC--CCCSEEEECC-CCCSHHHHHH-H---HHHHHHHSCC-CCSEEEEC-CCSS
T ss_pred EEEEEEECCCcHhHHHH--------HHHHhhcCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhccCCCCEEEEEECcc
Confidence 45789999995432211 11123457899999999875432111 0 011112111 346788999999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCccCCC
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRAYDA 245 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~~~~ 245 (257)
+.+..+.. .+......+..+ .+++ +|++++.++++++..+....
T Consensus 150 l~~~~~v~--~~~~~~~~~~~~--~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 150 LTTKKVVD--YTTAKEFADSLG--IPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CC--CCCC--SCC-CHHHHTTT--CCBCCCCC---HHHHHHHHHHTTTT
T ss_pred CCccccCC--HHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 98654321 112223333322 3444 79999999999988765443
No 190
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.92 E-value=2.8e-10 Score=90.93 Aligned_cols=112 Identities=9% Similarity=0.078 Sum_probs=54.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHH-HHH-hhcCEEEEeCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQI-AFADVVILNKVD 197 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~ql-~~~~vivlNK~D 197 (257)
...+.+.||+|......+.. .. ....+.+++|+|.+.....++.... +...+ ... ..|.++|.||+|
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~-----~~---~~~~~~~i~v~d~~~~~~s~~~~~~---~~~~~~~~~~~~piilv~nK~D 123 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHP-----HF---MTQRALYLAVYDLSKGQAEVDAMKP---WLFNIKARASSSPVILVGTHLD 123 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSH-----HH---HHHSEEEEEEEEGGGCHHHHHTHHH---HHHHHHHHCTTCEEEEEEECGG
T ss_pred ceEEEEEecCCCHHHHHhhH-----HH---ccCCcEEEEEEeCCcchhHHHHHHH---HHHHHHhhCCCCcEEEEEECCC
Confidence 35677999999542211111 11 1134678889998764322222110 11111 111 345677779999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCC---EEE-EeecCCc-ChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLA---HVI-RSVRCQV-DLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a---~i~-~s~~~~~-~~~~l~~~~~ 242 (257)
+.+..............+.+..... .++ +|++++. ++++|+..+.
T Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~ 173 (184)
T 2zej_A 124 VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII 173 (184)
T ss_dssp GCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHH
Confidence 9764321000111112222112222 244 6888885 8888877653
No 191
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.90 E-value=3.3e-09 Score=85.45 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=55.2
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH----hhcCEEEEeCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql----~~~~vivlNK~D 197 (257)
.++++||+|........ ...+ ....+.+++|+|......... .. .+...+.+. ..|.++|.||+|
T Consensus 57 ~l~~~Dt~~~~~~~~~~-----~~~~--~~~~~~~i~v~dv~~~~s~~~-~~---~~~~~l~~~~~~~~~piilV~NK~D 125 (192)
T 2cjw_A 57 TIILLDMWENKGENEWL-----HDHC--MQVGDAYLIVYSITDRASFEK-AS---ELRIQLRRARQTEDIPIILVGNKSD 125 (192)
T ss_dssp EEEEECCCCC----CTT-----GGGH--HHHCSEEEEEEETTCHHHHHH-HH---HHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred EEEEEEeccCcchhhhH-----HHhh--cccCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhhCCCCCeEEEEEechh
Confidence 46789999965421111 1111 123567888888875332111 00 011122222 346688899999
Q ss_pred CCCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCcc
Q 025133 198 LVSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 198 ~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~~ 242 (257)
+...... ..+....+.... .++++ .|++++.|+++++....
T Consensus 126 l~~~r~v--~~~~~~~~a~~~--~~~~~e~SA~~g~~v~~lf~~l~ 167 (192)
T 2cjw_A 126 LVRXREV--SVSEGRAXAVVF--DXKFIETSAAVQHNVKELFEGIV 167 (192)
T ss_dssp CGGGCCS--CHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHH
T ss_pred hhccccc--cHHHHHHHHHHh--CCceEEeccccCCCHHHHHHHHH
Confidence 9754332 123322222222 24555 79999999999887653
No 192
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.89 E-value=3.3e-09 Score=84.15 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=58.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc------cchhhhhcCCCCceeeeeeecCCCceeec
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG------VERAMINEGEGGALVEEWVELANGCICCT 102 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~------~d~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (257)
++++++|+|++|||||||+.+|+.. ..+.+++++.++++. .. .|..+... .+. .......++|.||.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~-~diD~~~g~D~~r~~~--aGa--~~v~~~s~~~~~~~ 77 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG-GEPARPEGVDSVRHER--AGA--VATAVEGDGLLQLH 77 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------C--SEEEEEETTEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC-cccccCCChhHHHHHh--cCC--CeEEeccCCEEEEE
Confidence 4789999999999999999999875 458899999998874 32 23332222 111 12445568888886
Q ss_pred cc--hhHHHHHHHHHHhcCCCCEEEEecCCC
Q 025133 103 VK--HSLVQALEQLVQRKERLDHILLETTGL 131 (257)
Q Consensus 103 ~~--~~~~~~l~~~~~~~~~~~~ilIDt~G~ 131 (257)
.+ +--...+.+++.+. +.|++|||+.|-
T Consensus 78 ~~~~~~~~~~~~~ll~~~-~~D~vlVEg~~~ 107 (169)
T 1xjc_A 78 LRRPLWRLDDVLALYAPL-RLDLVLVEGYKQ 107 (169)
T ss_dssp ECCSCCCHHHHHHHHGGG-CCSEEEEECCTT
T ss_pred ecccccchHHHHHHHHhc-CCCEEEEeCCCC
Confidence 52 10112334444444 799999998884
No 193
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.88 E-value=2e-09 Score=101.41 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
+.+.|+||||..+....... ....+|.+++|+|+.......... ..........|.++++||+|+.+
T Consensus 71 ~~l~liDTPGh~dF~~ev~~--------~l~~aD~aILVVDa~~gv~~qt~~-----~~~~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSR--------SLAACEGALLVVDAGQGVEAQTLA-----NCYTAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHH--------HHHHCSEEEEEEETTTCCCTHHHH-----HHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCchHHHHHHHH--------HHHHCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEeeeccCccc
Confidence 45779999998665433221 123478999999998653321110 01112234567899999999987
Q ss_pred cCCCcchHHHHHHHHHHhC---CCCEEEEeecCCcChhhhhcCcc
Q 025133 201 PERSGDSLDELEKEIHEIN---SLAHVIRSVRCQVDLSEVLNCRA 242 (257)
Q Consensus 201 ~~~~~~~l~~~~~~l~~~~---~~a~i~~s~~~~~~~~~l~~~~~ 242 (257)
.. ...+...+.+.. +...+..|++++.|++++++.+.
T Consensus 138 a~-----~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~ 177 (599)
T 3cb4_D 138 AD-----PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLV 177 (599)
T ss_dssp CC-----HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHH
T ss_pred cc-----HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHh
Confidence 53 233333333322 22245689999999999988763
No 194
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.87 E-value=7.1e-09 Score=99.41 Aligned_cols=135 Identities=17% Similarity=0.165 Sum_probs=70.7
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHccC-CCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~~-~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
.++..++|+|.+|+|||||+++|+... .-.+.+-+ +.|. ...|...... ..+ ..+...+.++.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v--~~~~-~~~d~~~~E~-~~g------iTi~~~~~~~~------ 73 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGA-ATMDFMEQER-ERG------ITITAAVTTCF------ 73 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC--------------------------------------CCEEEEE------
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCccccee--cCCc-eeccCchhhh-hcc------cccccceEEEE------
Confidence 467789999999999999999998421 00001111 1111 0001000000 000 01111111111
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhc
Q 025133 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~ 188 (257)
..+..+.|+||||..+....... ....+|.+++|+|+.......... ......+...+
T Consensus 74 ---------~~~~~i~liDTPG~~df~~~~~~--------~l~~aD~~ilVvDa~~g~~~~t~~-----~~~~~~~~~~p 131 (691)
T 1dar_A 74 ---------WKDHRINIIDTPGHVDFTIEVER--------SMRVLDGAIVVFDSSQGVEPQSET-----VWRQAEKYKVP 131 (691)
T ss_dssp ---------ETTEEEEEECCCSSTTCHHHHHH--------HHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCC
T ss_pred ---------ECCeEEEEEECcCccchHHHHHH--------HHHHCCEEEEEEECCCCcchhhHH-----HHHHHHHcCCC
Confidence 22467899999998765433321 123479999999998654322211 12223445678
Q ss_pred CEEEEeCCCCCCcC
Q 025133 189 DVVILNKVDLVSPE 202 (257)
Q Consensus 189 ~vivlNK~D~~~~~ 202 (257)
.++++||+|+...+
T Consensus 132 ~ivviNKiD~~~~~ 145 (691)
T 1dar_A 132 RIAFANKMDKTGAD 145 (691)
T ss_dssp EEEEEECTTSTTCC
T ss_pred EEEEEECCCcccCC
Confidence 89999999998654
No 195
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.86 E-value=1.7e-08 Score=91.28 Aligned_cols=166 Identities=19% Similarity=0.234 Sum_probs=88.4
Q ss_pred ccccccccCcccCCCc-ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhh--hhcCCCCceee
Q 025133 15 DETTHEFSNSHENDDV-SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAM--INEGEGGALVE 89 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~~-~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~--~~~~~~~~~~~ 89 (257)
+++++.|++....-+. +..+++++|+.|+||||++..|... ..++++.++..|+.. ......+ .... .++.+
T Consensus 80 ~~L~~~~~~~~~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r-~aa~~qL~~~~~~-~gv~v- 156 (425)
T 2ffh_A 80 EALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAAREQLRLLGEK-VGVPV- 156 (425)
T ss_dssp HHHHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC-HHHHHHHHHHHHH-HTCCE-
T ss_pred HHHHHHhCCCcccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC-chhHHHHHHhccc-CCccE-
Confidence 4567777664311111 4458899999999999999999763 458899999988764 2111111 0000 01100
Q ss_pred eeeecCCCceeeccchhH-HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHH
Q 025133 90 EWVELANGCICCTVKHSL-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLF 167 (257)
Q Consensus 90 ~~~~l~~gcicc~~~~~~-~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~ 167 (257)
.....+ ....++ ...+..+. ..++|++||||||.... ......+. .+......+.+++|+|+.....
T Consensus 157 --~~~~~~----~~p~~i~~~~l~~~~--~~~~DvVIIDTaG~l~~d~~l~~el~---~i~~~~~pd~vlLVvDa~tgq~ 225 (425)
T 2ffh_A 157 --LEVMDG----ESPESIRRRVEEKAR--LEARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTGQE 225 (425)
T ss_dssp --EECCTT----CCHHHHHHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGTTH
T ss_pred --EecCCC----CCHHHHHHHHHHHHH--HCCCCEEEEcCCCcccccHHHHHHHH---HhhhccCCceEEEEEeccchHH
Confidence 000000 011122 22222221 36799999999995543 22332211 1122234678899999986533
Q ss_pred HHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCc
Q 025133 168 QIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSP 201 (257)
Q Consensus 168 ~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~ 201 (257)
.... ...+..--....+|+||.|....
T Consensus 226 av~~-------a~~f~~~l~i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 226 ALSV-------ARAFDEKVGVTGLVLTKLDGDAR 252 (425)
T ss_dssp HHHH-------HHHHHHHTCCCEEEEESGGGCSS
T ss_pred HHHH-------HHHHHhcCCceEEEEeCcCCccc
Confidence 3221 11111111236789999987543
No 196
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.84 E-value=3.2e-10 Score=101.02 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=77.4
Q ss_pred EEEEEecCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~-~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.++++|.+|+|||||+|+|++... ..+.+.+++.+|++..... ..
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~---------------~~------------------- 209 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE---------------IP------------------- 209 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE---------------EE-------------------
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE---------------EE-------------------
Confidence 588999999999999999986310 1133455666665221110 00
Q ss_pred HHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccc---cceeeeeEEEEEeccc--hHHHHhhhccCCChhHHHHHHhh
Q 025133 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLE---SAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~---~~~~~~~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
.+..+.++||||+..+....+.+. ...+. ...+++.+++++|+.+ +...+.... .+...+.
T Consensus 210 ------~~~~~~liDtPG~~~~~~~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~-------~l~~~~~ 275 (369)
T 3ec1_A 210 ------LESGATLYDTPGIINHHQMAHFVD-ARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLD-------YIKGGRR 275 (369)
T ss_dssp ------CSTTCEEEECCSCCCCSSGGGGSC-TTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEE-------EEESSSE
T ss_pred ------eCCCeEEEeCCCcCcHHHHHHHHh-HHHHHHHhcccccCceEEEEcCCceEEECCEEEEE-------EccCCCc
Confidence 112367999999887653332221 11222 2257899999999943 222111111 1112345
Q ss_pred cCEEEEeCCCCCCcCCCcchHHHHHHHH
Q 025133 188 ADVVILNKVDLVSPERSGDSLDELEKEI 215 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~~~~~l~~~~~~l 215 (257)
+.++++||.|.+...+.....+.+.+.+
T Consensus 276 ~~~~v~~k~d~~~~~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 276 SFVCYMANELTVHRTKLEKADSLYANQL 303 (369)
T ss_dssp EEEEEECTTSCEEEEEGGGHHHHHHHHB
T ss_pred eEEEEecCCcccccccHHHHHHHHHHhc
Confidence 7789999999998766444444444443
No 197
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.78 E-value=6.5e-09 Score=103.34 Aligned_cols=110 Identities=17% Similarity=0.119 Sum_probs=65.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcC-EEEEeCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 198 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~-vivlNK~D~ 198 (257)
+..+.|+||||..+..... ......+|.+|+|+|+.......... ....+.+.+.+. ++++||+|+
T Consensus 358 ~~kI~IIDTPGHedF~~~m--------i~gas~AD~aILVVDAtdGv~~QTrE-----hL~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYVKNM--------ITGAAQMDGAILVVAATDGPMPQTRE-----HILLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp SCEEEEEECCCHHHHHHHH--------HHTSCCCSEEEEEEETTTCSCTTHHH-----HHHHHHHHTCSCEEEEEECCTT
T ss_pred CEEEEEEECCChHHHHHHH--------HHHHhhCCEEEEEEcCCccCcHHHHH-----HHHHHHHcCCCeEEEEEeeccc
Confidence 4678999999965332211 12344689999999998753221110 123344556774 678999999
Q ss_pred CCcCCC-cchHHHHHHHHHHhCC---CCEEE-EeecCC--------cChhhhhcCcc
Q 025133 199 VSPERS-GDSLDELEKEIHEINS---LAHVI-RSVRCQ--------VDLSEVLNCRA 242 (257)
Q Consensus 199 ~~~~~~-~~~l~~~~~~l~~~~~---~a~i~-~s~~~~--------~~~~~l~~~~~ 242 (257)
.+..+. ....+++...++.... ..+++ .|++++ .++.+|++.+.
T Consensus 425 v~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~ 481 (1289)
T 3avx_A 425 VDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLD 481 (1289)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHh
Confidence 863221 1122455566665542 34555 788887 35667776553
No 198
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.77 E-value=9e-10 Score=98.08 Aligned_cols=123 Identities=11% Similarity=0.162 Sum_probs=69.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCC--CeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHG--KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~--~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
.++++|.+|+|||||+|+|++...+ .+.+.++..+|++..... ..
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~---------------~~------------------ 208 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID---------------IP------------------ 208 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE---------------EE------------------
T ss_pred eEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE---------------EE------------------
Confidence 5889999999999999999864211 123445666664221100 01
Q ss_pred HHHHHhcCCCCEEEEecCCCCCcHHHHHhcccc--cccccceeeeeEEEEEeccc--hHHHHhhhccCCChhHHHHHHhh
Q 025133 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLD--DQLESAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIHQIAF 187 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~--~~~~~~~~~~~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~ql~~ 187 (257)
-+..+.++||||+..+..+.+.+..+ ..+....+++.+++++|+.. +...+.... .+...+.
T Consensus 209 -------~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d-------~l~~~~~ 274 (368)
T 3h2y_A 209 -------LDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFD-------YVSGGRR 274 (368)
T ss_dssp -------SSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEE-------EEESSSE
T ss_pred -------ecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEE-------EecCCCc
Confidence 11236799999988765332211100 01112356788999999942 222111110 1112345
Q ss_pred cCEEEEeCCCCCCcCC
Q 025133 188 ADVVILNKVDLVSPER 203 (257)
Q Consensus 188 ~~vivlNK~D~~~~~~ 203 (257)
+.++++||+|.+...+
T Consensus 275 ~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 275 AFTCHFSNRLTIHRTK 290 (368)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred eEEEEecCcccccccc
Confidence 7789999999998765
No 199
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.76 E-value=5e-08 Score=88.52 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=81.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEecCCCcccccchhhhh-cCCCCceeeeeeecCCCceeeccchh
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAMIN-EGEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~-~~~v~ii~~~~g~~~~~d~~~~~-~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
+..+++++|..|+||||++.+|... .. |+++.++..|+......+ .+.. ....+.. .+..+. .....+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~-ql~~~~~~~~l~-----v~~~~~--~~dp~~ 170 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIK-QLETLAEQVGVD-----FFPSDV--GQKPVD 170 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHH-HHHHHHHHHTCE-----ECCCCS--SSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHH-HHHhhcccCCee-----EEeCCC--CCCHHH
Confidence 4558889999999999999999763 44 899999999986521111 1100 0000110 011110 001122
Q ss_pred H-HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 107 L-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 107 ~-~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
+ ...+..+. ..++|++||||||.... ......+. .+......+.+++|+|+........ ....
T Consensus 171 i~~~~l~~~~--~~~~D~VIIDTpG~l~~~~~l~~~L~---~~~~~~~p~~vllVvda~~g~~~~~----------~~~~ 235 (433)
T 2xxa_A 171 IVNAALKEAK--LKFYDVLLVDTAGRLHVDEAMMDEIK---QVHASINPVETLFVVDAMTGQDAAN----------TAKA 235 (433)
T ss_dssp HHHHHHHHHH--HTTCSEEEEECCCCCTTCHHHHHHHH---HHHHHSCCSEEEEEEETTBCTTHHH----------HHHH
T ss_pred HHHHHHHHHH--hCCCCEEEEECCCcccccHHHHHHHH---HHHHhhcCcceeEEeecchhHHHHH----------HHHH
Confidence 2 22222221 35799999999996553 23332221 1122335678899999986533211 1122
Q ss_pred Hh--hc-CEEEEeCCCCCCc
Q 025133 185 IA--FA-DVVILNKVDLVSP 201 (257)
Q Consensus 185 l~--~~-~vivlNK~D~~~~ 201 (257)
+. .+ ..+|+||+|....
T Consensus 236 f~~~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 236 FNEALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp HHHHSCCCCEEEECTTSSSC
T ss_pred HhccCCCeEEEEecCCCCcc
Confidence 22 23 4679999998644
No 200
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.72 E-value=2.4e-08 Score=80.49 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=57.7
Q ss_pred CEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCCC
Q 025133 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDL 198 (257)
Q Consensus 122 ~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D~ 198 (257)
.+.+.||+|.......... . ....+.+++|+|......... ... +...+.+ ...+.++++||+|+
T Consensus 55 ~~~i~Dt~g~~~~~~~~~~-----~---~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~i~~v~nK~Dl 122 (199)
T 2f9l_A 55 KAQIWDTAGQERYRRITSA-----Y---YRGAVGALLVYDIAKHLTYEN-VER---WLKELRDHADSNIVIMLVGNKSDL 122 (199)
T ss_dssp EEEEEECSSGGGTTCCCHH-----H---HTTCSEEEEEEETTCHHHHHT-HHH---HHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEECCCchhhhhhhHH-----H---HhcCCEEEEEEECcCHHHHHH-HHH---HHHHHHHhcCCCCeEEEEEECccc
Confidence 4568999995422111110 0 123577899999886544211 100 1111222 13456788999999
Q ss_pred CCcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 199 VSPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 199 ~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
...... ..+........ +...++ .|+..+.++++++..+
T Consensus 123 ~~~~~~--~~~~a~~l~~~--~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 123 RHLRAV--PTDEARAFAEK--NNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp GGGCCS--CHHHHHHHHHH--TTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccCc--CHHHHHHHHHH--cCCeEEEEeCCCCCCHHHHHHHH
Confidence 764332 23344444443 445566 7888888998887655
No 201
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.71 E-value=1.1e-08 Score=86.34 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=48.1
Q ss_pred eeeeEEEEEeccch--HHHHhhhccCCChhHHHHH----HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE
Q 025133 152 RLDSIITVVDAKNL--LFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (257)
Q Consensus 152 ~~~~vi~vvDa~~~--~~~~~~~~~~~~~~~~~~q----l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~ 225 (257)
.++.+++|+|+.+. ... ..... +...+.+ -..|.++|.||+|+.+... ++....+.+.. ....++
T Consensus 162 ~ad~vilV~D~t~~~~~s~-~~~~~---~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----v~~~~~~~~~~-~~~~~~ 232 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF-DDQLK---FVSNLYNQLAKTKKPIVVVLTKCDEGVERY----IRDAHTFALSK-KNLQVV 232 (255)
T ss_dssp ECCEEEEEEECBC----CH-HHHHH---HHHHHHHHHHHTTCCEEEEEECGGGBCHHH----HHHHHHHHHTS-SSCCEE
T ss_pred cCCEEEEEEECCCCchhhH-HHHHH---HHHHHHHHhccCCCCEEEEEEcccccccHH----HHHHHHHHHhc-CCCeEE
Confidence 58999999999764 211 11100 1111211 2457789999999975432 34444444332 234555
Q ss_pred -EeecCCcChhhhhcCc
Q 025133 226 -RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 -~s~~~~~~~~~l~~~~ 241 (257)
+|++++.++++++..+
T Consensus 233 e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 233 ETSARSNVNVDLAFSTL 249 (255)
T ss_dssp ECBTTTTBSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 7999999999988654
No 202
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.66 E-value=1.2e-07 Score=82.83 Aligned_cols=155 Identities=16% Similarity=0.217 Sum_probs=79.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC----CCCceeeeeeecCCCceeeccc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG----EGGALVEEWVELANGCICCTVK 104 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~----~~~~~~~~~~~l~~gcicc~~~ 104 (257)
+..+++|+|++|+||||++..|... ..++++.++..|+.. ......+.... ..+..+ ++.+.......
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r-~~a~~ql~~~~~~~~~~~l~v-----ip~~~~~~~p~ 177 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR-AGATQQLEEWIKTRLNNKVDL-----VKANKLNADPA 177 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC-HHHHHHHHHHHTTTSCTTEEE-----ECCSSTTCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc-hhHHHHHHHHHhccccCCceE-----EeCCCCCCCHH
Confidence 4458999999999999999999753 348899999888653 11100010000 011110 10000000001
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcc-cccccc--cceeeeeEEEEEeccchHHHHhhhccCCChhH
Q 025133 105 HSLVQALEQLVQRKERLDHILLETTGLANPA-PLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (257)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~-~~~~~~--~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (257)
..+...+.... ..++|+|||||||..... ..++.+. +...+. .....+.+++|+|+......+... .
T Consensus 178 ~~~~~~l~~~~--~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~-------~ 248 (320)
T 1zu4_A 178 SVVFDAIKKAK--EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQA-------E 248 (320)
T ss_dssp HHHHHHHHHHH--HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHH-------H
T ss_pred HHHHHHHHHHH--hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHH-------H
Confidence 11223333222 457999999999966532 2222211 001110 012357889999998654332211 1
Q ss_pred HHHHHhhcCEEEEeCCCCCC
Q 025133 181 AIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 181 ~~~ql~~~~vivlNK~D~~~ 200 (257)
.+.+--...-+|+||.|...
T Consensus 249 ~~~~~~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 249 EFSKVADVSGIILTKMDSTS 268 (320)
T ss_dssp HHTTTSCCCEEEEECGGGCS
T ss_pred HHhhcCCCcEEEEeCCCCCC
Confidence 11111113458999999654
No 203
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.66 E-value=2.2e-07 Score=74.49 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=56.1
Q ss_pred EEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH---HhhcCEEEEeCCCCC
Q 025133 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDLV 199 (257)
Q Consensus 123 ~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---l~~~~vivlNK~D~~ 199 (257)
+.+.||+|.......... . ....+.+++|+|....... ..... +...+.+ ...+.++++||+|+.
T Consensus 80 ~~i~Dt~g~~~~~~~~~~-----~---~~~~~~~i~v~d~~~~~s~-~~~~~---~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 80 AQIWDTAGLERYRAITSA-----Y---YRGAVGALLVYDIAKHLTY-ENVER---WLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEEECSCCSSSCCCHH-----H---HTTCCEEEEEEETTCHHHH-HTHHH---HHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEECCCCcchhhhhHH-----H---hhcCCEEEEEEECcCHHHH-HHHHH---HHHHHHHhcCCCCcEEEEEECcccc
Confidence 457899997543211110 0 1124678899998765432 11100 1111122 134568899999997
Q ss_pred CcCCCcchHHHHHHHHHHhCCCCEEE-EeecCCcChhhhhcCc
Q 025133 200 SPERSGDSLDELEKEIHEINSLAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l~~~~~~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+..+. ..+.......+ |...++ .|+..+.++++++..+
T Consensus 148 ~~~~~--~~~~a~~l~~~--~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 148 HLRAV--PTDEARAFAEK--NGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp GGCCS--CHHHHHHHHHH--TTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccc--CHHHHHHHHHH--cCCEEEEEeCCCCCCHHHHHHHH
Confidence 64332 23444444433 445566 6888888998887654
No 204
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.66 E-value=2.9e-07 Score=79.74 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=91.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+..+++++|++|+||||++..|... ..++++.++..|... ......+-.. ...+..+ .....++ .+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r-~~a~eqL~~~~~~~gl~~--~~~~s~~-----~~~~v 174 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-AAAIEQLKIWGERVGATV--ISHSEGA-----DPAAV 174 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-HHHHHHHHHHHHHHTCEE--ECCSTTC-----CHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc-HHHHHHHHHHHHHcCCcE--EecCCcc-----CHHHH
Confidence 4458999999999999999999763 347889888877543 1111110000 0000100 0000110 11111
Q ss_pred -HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcc-ccccccc--ceeeeeEEEEEeccchHHHHhhhccCCChhHHH
Q 025133 108 -VQALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (257)
Q Consensus 108 -~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~~--~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (257)
...+.... ..+++++++||||.... ..+.+.+. +...+.. ....+.+++|+|+......+.. ...+
T Consensus 175 ~~~al~~a~--~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~-------a~~~ 245 (306)
T 1vma_A 175 AFDAVAHAL--ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQ-------AKIF 245 (306)
T ss_dssp HHHHHHHHH--HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHH-------HHHH
T ss_pred HHHHHHHHH--hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHH-------HHHH
Confidence 22333322 45799999999996443 22322221 0111111 1235678899999865443321 1112
Q ss_pred HHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 183 HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 183 ~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
.+.-...-+|+||.|....- ..+.......+ .+|.....++ .+++|
T Consensus 246 ~~~~~i~gvVlTk~D~~~~g------G~~l~~~~~~~--~Pi~~i~~Ge-~~~dl 291 (306)
T 1vma_A 246 KEAVNVTGIILTKLDGTAKG------GITLAIARELG--IPIKFIGVGE-KAEDL 291 (306)
T ss_dssp HHHSCCCEEEEECGGGCSCT------THHHHHHHHHC--CCEEEEECSS-SGGGE
T ss_pred HhcCCCCEEEEeCCCCccch------HHHHHHHHHHC--CCEEEEeCCC-Chhhc
Confidence 22223467899999975432 23334444433 3455444443 35544
No 205
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.65 E-value=3.6e-08 Score=94.20 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=42.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
...+.|+||||..+...... .....++.+++|+|+.......... +.....+.+.+.++++||+|+.
T Consensus 73 ~~~~nliDTpG~~~f~~~~~--------~~l~~ad~~ilVvD~~~g~~~qt~~-----~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDFVGEIR--------GALEAADAALVAVSAEAGVQVGTER-----AWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp TEEEEEEECCCSGGGHHHHH--------HHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEECGGGC
T ss_pred CEEEEEEeCCCccchHHHHH--------HHHhhcCcEEEEEcCCcccchhHHH-----HHHHHHHccCCEEEEecCCchh
Confidence 45678999999765433221 1123478999999987654332211 2223334467889999999997
No 206
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.65 E-value=2e-07 Score=81.62 Aligned_cols=151 Identities=19% Similarity=0.266 Sum_probs=78.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhh-cCCCCceeeeeeecCCCceeeccchhH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMIN-EGEGGALVEEWVELANGCICCTVKHSL 107 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~-~~~~~~~~~~~~~l~~gcicc~~~~~~ 107 (257)
+.-+++++|++||||||+++.|... ..+.++.+...+... ......+.. ....++.+ ..-..+. ......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r-~~a~eql~~~~~~~gv~~---v~q~~~~---~p~~~v 200 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR-AGAIEQLEEHAKRIGVKV---IKHSYGA---DPAAVA 200 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS-TTHHHHHHHHHHHTTCEE---ECCCTTC---CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc-cchHHHHHHHHHHcCceE---EeccccC---CHHHHH
Confidence 3458999999999999999999763 346688888776532 111110000 00001100 0000000 000111
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~ 186 (257)
.+.+... ...+++++++||+|..+. ....+.+. .+......+..++++|+......... ...+.+-.
T Consensus 201 ~e~l~~~--~~~~~d~vliDtaG~~~~~~~l~~eL~---~i~ral~~de~llvLDa~t~~~~~~~-------~~~~~~~~ 268 (328)
T 3e70_C 201 YDAIQHA--KARGIDVVLIDTAGRSETNRNLMDEMK---KIARVTKPNLVIFVGDALAGNAIVEQ-------ARQFNEAV 268 (328)
T ss_dssp HHHHHHH--HHHTCSEEEEEECCSCCTTTCHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHH-------HHHHHHHS
T ss_pred HHHHHHH--HhccchhhHHhhccchhHHHHHHHHHH---HHHHHhcCCCCEEEEecHHHHHHHHH-------HHHHHHhc
Confidence 2222211 134688999999997542 22332221 11222346778999999876543321 12222222
Q ss_pred hcCEEEEeCCCCCC
Q 025133 187 FADVVILNKVDLVS 200 (257)
Q Consensus 187 ~~~vivlNK~D~~~ 200 (257)
....+++||.|...
T Consensus 269 ~it~iilTKlD~~a 282 (328)
T 3e70_C 269 KIDGIILTKLDADA 282 (328)
T ss_dssp CCCEEEEECGGGCS
T ss_pred CCCEEEEeCcCCcc
Confidence 46789999999743
No 207
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.64 E-value=9.1e-08 Score=91.92 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
.+.+.||||||..+....... ....+|.+|+|+|+.......... ......+...+.++++||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~--------~l~~aD~aIlVvDa~~gv~~qt~~-----~~~~~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVER--------SMRVLDGAVMVYCAVGGVQPQSET-----VWRQANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred ceeEEEEeCCCccchHHHHHH--------HHHHCCEEEEEEeCCCCCcHHHHH-----HHHHHHHcCCCEEEEEeCCCcc
Confidence 477999999998764333221 123479999999998764322111 1222334456889999999998
Q ss_pred CcCCCcchHHHHHHHH
Q 025133 200 SPERSGDSLDELEKEI 215 (257)
Q Consensus 200 ~~~~~~~~l~~~~~~l 215 (257)
..+ ..+.+++++..+
T Consensus 148 ~~~-~~~~~~~l~~~l 162 (704)
T 2rdo_7 148 GAN-FLKVVNQIKTRL 162 (704)
T ss_pred ccc-HHHHHHHHHHHh
Confidence 754 223344444443
No 208
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.63 E-value=1.7e-07 Score=80.95 Aligned_cols=146 Identities=20% Similarity=0.188 Sum_probs=80.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCCCcccccchhhhhc-CCCCceeeeeeecCCCceeeccchh
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS 106 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~ 106 (257)
+..+++++|++|+||||++..|... ..|+++.++..|+.. ......+... ...+.... .+....+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r-~~a~eqL~~~~~~~gl~~~----------~~~~~~~ 172 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR-IAAVEQLKTYAELLQAPLE----------VCYTKEE 172 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS-TTHHHHHHHHHTTTTCCCC----------BCSSHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc-chHHHHHHHHHHhcCCCeE----------ecCCHHH
Confidence 3458999999999999999999753 458899999988753 2111111110 00011000 0011223
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH
Q 025133 107 LVQALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (257)
Q Consensus 107 ~~~~l~~~~~~~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql 185 (257)
+...+. ...+++++|+||+|..... ..+..+. ..+. ....+.+++|+|+............ .+..+
T Consensus 173 l~~al~----~~~~~dlvIiDT~G~~~~~~~~~~el~--~~l~-~~~~~~~~lVl~at~~~~~~~~~~~------~~~~l 239 (296)
T 2px0_A 173 FQQAKE----LFSEYDHVFVDTAGRNFKDPQYIDELK--ETIP-FESSIQSFLVLSATAKYEDMKHIVK------RFSSV 239 (296)
T ss_dssp HHHHHH----HGGGSSEEEEECCCCCTTSHHHHHHHH--HHSC-CCTTEEEEEEEETTBCHHHHHHHTT------TTSSS
T ss_pred HHHHHH----HhcCCCEEEEeCCCCChhhHHHHHHHH--HHHh-hcCCCeEEEEEECCCCHHHHHHHHH------HHhcC
Confidence 333333 2357899999999976542 2222211 1111 1124567889998876544332211 11111
Q ss_pred hhcCEEEEeCCCCCCc
Q 025133 186 AFADVVILNKVDLVSP 201 (257)
Q Consensus 186 ~~~~vivlNK~D~~~~ 201 (257)
...-+|+||.|....
T Consensus 240 -~~~giVltk~D~~~~ 254 (296)
T 2px0_A 240 -PVNQYIFTKIDETTS 254 (296)
T ss_dssp -CCCEEEEECTTTCSC
T ss_pred -CCCEEEEeCCCcccc
Confidence 235788999997643
No 209
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.63 E-value=2e-07 Score=80.45 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=85.9
Q ss_pred EEccccccccCcccCCCc-ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhh--hhcCCCCce
Q 025133 13 RIDETTHEFSNSHENDDV-SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAM--INEGEGGAL 87 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~--~~~~~~~~~ 87 (257)
..+++.+.|++.....+. +..+++++|++|+||||++..|... ..+.++.++..++.. ......+ .... .+..
T Consensus 78 ~~~~l~~~~~~~~~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~-~~~~~ql~~~~~~-~~l~ 155 (295)
T 1ls1_A 78 VYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAAREQLRLLGEK-VGVP 155 (295)
T ss_dssp HHHHHHHHTTSSCCCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC-HHHHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHHCCCCceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc-HhHHHHHHHhccc-CCeE
Confidence 346677777654211111 4458899999999999999999763 347899999888754 1111110 0000 0000
Q ss_pred eeeeeecCCCceeeccchhH-HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcccccccccceeeeeEEEEEeccch
Q 025133 88 VEEWVELANGCICCTVKHSL-VQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNL 165 (257)
Q Consensus 88 ~~~~~~l~~gcicc~~~~~~-~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~ 165 (257)
+ +..+. .....++ ...+.... ..++|++||||||.... ......+. .+......+.+++|+|+...
T Consensus 156 ~-----~~~~~--~~~p~~l~~~~l~~~~--~~~~D~viiDtpp~~~~d~~~~~~l~---~~~~~~~~~~~~lv~~~~~~ 223 (295)
T 1ls1_A 156 V-----LEVMD--GESPESIRRRVEEKAR--LEARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTG 223 (295)
T ss_dssp E-----EECCT--TCCHHHHHHHHHHHHH--HHTCCEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGT
T ss_pred E-----EEcCC--CCCHHHHHHHHHHHHH--hCCCCEEEEeCCCCccccHHHHHHHH---HHhhhcCCCEEEEEEeCCCc
Confidence 0 00000 0011122 22333322 25799999999985432 22222111 01111235677899998764
Q ss_pred HHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCC
Q 025133 166 LFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~ 200 (257)
...... ...+..--...-+|+||.|...
T Consensus 224 ~~~~~~-------~~~~~~~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 224 QEALSV-------ARAFDEKVGVTGLVLTKLDGDA 251 (295)
T ss_dssp HHHHHH-------HHHHHHHTCCCEEEEECGGGCS
T ss_pred HHHHHH-------HHHHhhcCCCCEEEEECCCCCc
Confidence 332221 1111111123668999999764
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.59 E-value=5.7e-08 Score=82.82 Aligned_cols=61 Identities=13% Similarity=0.263 Sum_probs=35.8
Q ss_pred eeeeeEEEEEecc-chHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHH
Q 025133 151 VRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHE 217 (257)
Q Consensus 151 ~~~~~vi~vvDa~-~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~ 217 (257)
.++...++++|.. ......+.. +...+.+. .+.++|+||+|.++.++.......+.+.++.
T Consensus 110 aRal~~lllldep~~gL~~lD~~-----~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~ 171 (270)
T 3sop_A 110 TRVHCCLYFISPTGHSLRPLDLE-----FMKHLSKV-VNIIPVIAKADTMTLEEKSEFKQRVRKELEV 171 (270)
T ss_dssp CSCCEEEEEECCCSSSCCHHHHH-----HHHHHHTT-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred heeeeeeEEEecCCCcCCHHHHH-----HHHHHHhc-CcEEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 3456778999965 444443321 12222222 5678899999999887643444445555544
No 211
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.55 E-value=7.2e-08 Score=85.39 Aligned_cols=103 Identities=23% Similarity=0.179 Sum_probs=57.4
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~~ 113 (257)
.++++|.+|+|||||+|+|+.. + +.+.+.|+.+...+... .. ..+.-...|.+
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~----~-~~v~~~p~tTi~p~~g~-------------v~---------~~~~r~~~l~~ 56 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA----G-IEAANYPFCTIEPNTGV-------------VP---------MPDPRLDALAE 56 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT----C-------CCCCCCCCSSE-------------EE---------CCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC----C-CcccCCCCceECceEEE-------------Ee---------cCCcccceeee
Confidence 5789999999999999999953 2 33445555422221100 01 11111222332
Q ss_pred HHH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc
Q 025133 114 LVQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 114 ~~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
... +..+..+.|+||||+.......+.+. ...+.....+|.+++|+|+..
T Consensus 57 ~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~-~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 57 IVKPERILPTTMEFVDIAGLVAGASKGEGLG-NKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHCCSEEECCEEEEEECCSCCTTHHHHGGGT-CCHHHHHHTCSEEEEEEECSC
T ss_pred eecccceeeeEEEEEECCCCcccccccchHH-HHHHHHHHhcCeEEEEEecCC
Confidence 221 01124689999999987654433332 233444567899999999975
No 212
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.54 E-value=3.4e-07 Score=83.90 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=76.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccch-hhh-hcCCCCceeeeeeecCCCceeeccchhHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVER-AMI-NEGEGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~-~~~-~~~~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
-+++|+|++|||||||++.|... ..+.++.+...+.......+. ... .....+. + .-..+. .....+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~v-V----~Q~~~~---~p~~tV~ 365 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPV-I----AQHTGA---DSASVIF 365 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCE-E----CCSTTC---CHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceE-E----ecccCc---CHHHHHH
Confidence 48999999999999999999763 336677776655432000000 000 0000000 0 000000 0011122
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcc-ccccccc--ceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 109 QALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~~--~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
..+.... ..+++++||||+|..+. ..++..+. +....+. ....+.+++++|+......+.. ...+.+
T Consensus 366 e~l~~a~--~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~-------ak~f~~ 436 (503)
T 2yhs_A 366 DAIQAAK--ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ-------AKLFHE 436 (503)
T ss_dssp HHHHHHH--HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH-------HHHHHH
T ss_pred HHHHHHH--hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH-------HHHHHh
Confidence 2222222 35789999999997543 33332221 0000010 0123568889999987655432 112222
Q ss_pred HhhcCEEEEeCCCCCC
Q 025133 185 IAFADVVILNKVDLVS 200 (257)
Q Consensus 185 l~~~~vivlNK~D~~~ 200 (257)
.-.-..+|+||.|...
T Consensus 437 ~~~itgvIlTKLD~ta 452 (503)
T 2yhs_A 437 AVGLTGITLTKLDGTA 452 (503)
T ss_dssp HTCCSEEEEECGGGCS
T ss_pred hcCCCEEEEEcCCCcc
Confidence 2234789999999643
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.54 E-value=9.5e-08 Score=86.24 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=27.5
Q ss_pred EEEEccccccccCcccCCC-------cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDD-------VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-------~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++.+ ++.|++.. +.+ ..++-++|+|++|||||||+|.|+.
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 345556 67776543 322 2233399999999999999999985
No 214
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.53 E-value=2.6e-08 Score=79.41 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=34.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++++++|+|++|||||||+++|+.. ..+.+++++.++++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999875 457889999988764
No 215
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.43 E-value=5.1e-08 Score=95.40 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
+..+.|+||||..+....... ....+|.+|+|+|+.......... ......+.+.+.++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~--------~l~~aD~ailVvDa~~g~~~qt~~-----~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTA--------ALRVTDGALVVVDTIEGVCVQTET-----VLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHH--------HHHTCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHH--------HHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCeEEEEECCCcc
Confidence 456889999998765433221 123479999999998764332211 1112223456789999999987
Q ss_pred C
Q 025133 200 S 200 (257)
Q Consensus 200 ~ 200 (257)
.
T Consensus 164 ~ 164 (842)
T 1n0u_A 164 L 164 (842)
T ss_dssp H
T ss_pred h
Confidence 3
No 216
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.43 E-value=2.3e-07 Score=83.02 Aligned_cols=104 Identities=20% Similarity=0.074 Sum_probs=46.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
..++++|++|+|||||+|+|.. .++ .+.+.|+.+..... |-+.+ .+.-...+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg----~~~-~~~~~p~tTi~p~~--------------------g~v~v--~~~r~~~l~ 75 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTN----SQA-SAENFPFCTIDPNE--------------------SRVPV--PDERFDFLC 75 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC------------------CCSE--------------------EEEEC--CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC----CCc-cccCCCccccCcee--------------------EEEEE--CCccceeec
Confidence 3589999999999999999994 333 44455554222111 10100 111111122
Q ss_pred HHHH--hcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccc
Q 025133 113 QLVQ--RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 164 (257)
Q Consensus 113 ~~~~--~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~ 164 (257)
.... ......+.|+||||+.......+.+. ...+.....+|.+++|+|+..
T Consensus 76 ~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg-~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 76 QYHKPASKIPAFLNVVDIAGLVKGAHNGQGLG-NAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHCCSEEECCEEEEEECCC-----------C-CHHHHHHHTSSSEEEEEEC--
T ss_pred cccCcccccccccEEEECCCcccccchhhHHH-HHHHHHHHhcCeEEEEEecCC
Confidence 2110 01134689999999886543222221 123344567899999999864
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.40 E-value=2.3e-07 Score=83.53 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|+|++|||||||+|.|+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999985
No 218
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.35 E-value=1.2e-06 Score=81.90 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=55.2
Q ss_pred cCCCCEEEEecCCCCCcH-HHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCC
Q 025133 118 KERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKV 196 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~-~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~ 196 (257)
+.++.+-||||||-.+.. +....+ .-+|.+|+||||..+....... +.....+.+.|-++++||+
T Consensus 97 ~~~~~iNlIDTPGHvDF~~Ev~raL---------~~~DgAvlVvda~~GV~~qT~~-----v~~~a~~~~lp~i~fINK~ 162 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSEDTYRVL---------TAVDSALVVIDAAKGVEAQTRK-----LMDVCRMRATPVMTFVNKM 162 (548)
T ss_dssp ETTEEEEEECCCCGGGCSHHHHHHH---------HSCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCCEEEEEECT
T ss_pred ECCEEEEEEeCCCcHHHHHHHHHHH---------HhcCceEEEeecCCCcccccHH-----HHHHHHHhCCceEEEEecc
Confidence 345678899999977653 333322 3479999999999887654432 2334455677899999999
Q ss_pred CCCCcCCCcchHHHHHHHH
Q 025133 197 DLVSPERSGDSLDELEKEI 215 (257)
Q Consensus 197 D~~~~~~~~~~l~~~~~~l 215 (257)
|....+- .+.+++++..+
T Consensus 163 Dr~~ad~-~~~~~~i~~~l 180 (548)
T 3vqt_A 163 DREALHP-LDVMADIEQHL 180 (548)
T ss_dssp TSCCCCH-HHHHHHHHHHH
T ss_pred cchhcch-hHhhhhhhhhc
Confidence 9987642 23344444444
No 219
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.29 E-value=2.7e-07 Score=87.73 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=50.3
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCC
Q 025133 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 197 (257)
Q Consensus 118 ~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D 197 (257)
+.++.+-||||||-.+.....+. ...-+|.+|+||||..+....... ......+.+.|.++++||+|
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~r--------aL~~~DgavlVVDa~~GV~~qT~~-----v~~~a~~~~lp~i~~INKmD 130 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYR--------SLSVLDGAILLISAKDGVQAQTRI-----LFHALRKMGIPTIFFINKID 130 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHH--------HHTTCSEEECCEESSCTTCSHHHH-----HHHHHHHHTCSCEECCEECC
T ss_pred ECCEEEEEEECCCcHHHHHHHHH--------HHHHhCEEEEEEeCCCCCcHHHHH-----HHHHHHHcCCCeEEEEeccc
Confidence 34566789999998776443321 122379999999999876554332 23344566778999999999
Q ss_pred CCCcC
Q 025133 198 LVSPE 202 (257)
Q Consensus 198 ~~~~~ 202 (257)
....+
T Consensus 131 r~~a~ 135 (638)
T 3j25_A 131 QNGID 135 (638)
T ss_dssp SSSCC
T ss_pred cccCC
Confidence 88765
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.27 E-value=8.2e-06 Score=70.54 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=76.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhh--hhcCCCCceeeeeeecCCCceeeccch-
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAM--INEGEGGALVEEWVELANGCICCTVKH- 105 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~l~~gcicc~~~~- 105 (257)
+..+++++|++||||||+++.|... ..+.++.+...+... ......+ .... .++.+ ..-..+. ...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r-~~a~~ql~~~~~~-~~i~~---v~q~~~~----~p~~ 171 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR-AAGGTQLSEWGKR-LSIPV---IQGPEGT----DSAA 171 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS-TTTTHHHHHHHHH-HTCCE---ECCCTTC----CHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC-hhHHHHHHHHHHh-cCceE---EEeCCCC----CHHH
Confidence 3458999999999999999999763 346788877766432 1100000 0000 00000 0000000 000
Q ss_pred hHHHHHHHHHHhcCCCCEEEEecCCCCC-cHHHHHhcc-cccccc--cceeeeeEEEEEeccchHHHHhhhccCCChhHH
Q 025133 106 SLVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (257)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~ilIDt~G~~~-~~~~~~~~~-~~~~~~--~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (257)
.....+.... ..+++++++||+|..+ .......+. ....+. -....+.+++++|+.......+. ...
T Consensus 172 ~v~~~v~~~~--~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~-------~~~ 242 (304)
T 1rj9_A 172 LAYDAVQAMK--ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ-------AKK 242 (304)
T ss_dssp HHHHHHHHHH--HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH-------HHH
T ss_pred HHHHHHHHHH--hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHH-------HHH
Confidence 1112222111 2357899999999654 223322221 000110 01234567889999876554332 112
Q ss_pred HHHHhhcCEEEEeCCCCCC
Q 025133 182 IHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 182 ~~ql~~~~vivlNK~D~~~ 200 (257)
+.+.....++++||.|...
T Consensus 243 ~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 243 FHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHHHCCSEEEEECTTSSC
T ss_pred HHHHcCCcEEEEECCcccc
Confidence 2222345789999998754
No 221
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.26 E-value=1.3e-05 Score=64.42 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=81.6
Q ss_pred eEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHH
Q 025133 33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (257)
Q Consensus 33 ~vv~i~-G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~ 109 (257)
+++.|+ +..|+||||+.-.|... ..|+++.++..|++... . ........+. .... .....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~--~-~~~~~~~~~~---~~~~--------~~~~~l~~ 67 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSL--T-NWSKAGKAAF---DVFT--------AASEKDVY 67 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHH--H-HHHTTSCCSS---EEEE--------CCSHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCH--H-HHHhcCCCCC---cEEe--------cCcHHHHH
Confidence 456665 66889999999998653 46899999999976411 1 1111111111 0111 11244555
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHh---
Q 025133 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--- 186 (257)
Q Consensus 110 ~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~--- 186 (257)
.+..+ ..++|+|+||||+....... .. ...+|.++.++.+......... +...+.+++
T Consensus 68 ~l~~l---~~~yD~viiD~~~~~~~~~~-~~---------l~~ad~viiv~~~~~~~~~~~~------~~~~l~~~~~~~ 128 (206)
T 4dzz_A 68 GIRKD---LADYDFAIVDGAGSLSVITS-AA---------VMVSDLVIIPVTPSPLDFSAAG------SVVTVLEAQAYS 128 (206)
T ss_dssp THHHH---TTTSSEEEEECCSSSSHHHH-HH---------HHHCSEEEEEECSCTTTHHHHH------HHHHHHTTSCGG
T ss_pred HHHHh---cCCCCEEEEECCCCCCHHHH-HH---------HHHCCEEEEEecCCHHHHHHHH------HHHHHHHHHHhC
Confidence 55543 34699999999986643221 11 1235789999988765411111 122222221
Q ss_pred --hcCEEEEeCCCCCCcCCCcchHHHHHHHHHHh
Q 025133 187 --FADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (257)
Q Consensus 187 --~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~ 218 (257)
....+|+||++.-... ...+.+.+++.
T Consensus 129 ~~~~~~vv~N~~~~~~~~-----~~~~~~~l~~~ 157 (206)
T 4dzz_A 129 RKVEARFLITRKIEMATM-----LNVLKESIKDT 157 (206)
T ss_dssp GCCEEEEEECSBCTTEEE-----EHHHHHHHHHH
T ss_pred CCCcEEEEEeccCCCchH-----HHHHHHHHHHc
Confidence 1237899999854321 24455556553
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.21 E-value=9.2e-07 Score=75.74 Aligned_cols=34 Identities=35% Similarity=0.345 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~ 70 (257)
..++++|.||+|||||+|+|+ +.+.+.+.+.+|.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~----~~~~~~~~~~~g~ 154 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLA----KKNIAKTGDRPGI 154 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHH----TSCCC--------
T ss_pred ceEEEEecCCCchHHHHHHHh----cCceeecCCCCCe
Confidence 468999999999999999999 4444555566664
No 223
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.18 E-value=1.3e-07 Score=84.63 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++|+|++|||||||+|.|+.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34799999999999999999995
No 224
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.18 E-value=3.5e-07 Score=81.26 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|++|+|||||+|+|++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999985
No 225
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.15 E-value=1.4e-06 Score=82.44 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCcEEEEccccccccCcc--------------cCCCcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSH--------------ENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++..+.+.++.+.|+.+. ......+|.++|+|++|||||||++.|+..
T Consensus 7 ~~~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 7 SPGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC
Confidence 344677888888776532 123567899999999999999999999853
No 226
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.14 E-value=2.1e-06 Score=82.61 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=48.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCC
Q 025133 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (257)
Q Consensus 120 ~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~ 199 (257)
++.+-||||||-.+.....+ +...-+|.+|.||||..+....... +.....+.+.+-++++||+|..
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~--------~aLr~~DgavlvVDaveGV~~qT~~-----v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVE--------RSLRVLDGAVVVFCGTSGVEPQSET-----VWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHH--------HHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHHHHTCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHH--------HHHHHhCeEEEEEECCCCCchhHHH-----HHHHHHHcCCCeEEEEcccccc
Confidence 45577999999877644332 1122479999999999877654432 2334455677899999999997
Q ss_pred CcC
Q 025133 200 SPE 202 (257)
Q Consensus 200 ~~~ 202 (257)
..+
T Consensus 151 ~a~ 153 (709)
T 4fn5_A 151 GAN 153 (709)
T ss_dssp TCC
T ss_pred Ccc
Confidence 654
No 227
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.11 E-value=2e-05 Score=67.78 Aligned_cols=41 Identities=27% Similarity=0.214 Sum_probs=32.9
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
.+..+++|+|..|+||||+.-.|... ..|+++.++..|++.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 34567888899999999999998653 458999999999753
No 228
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.09 E-value=1.7e-05 Score=69.13 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=53.6
Q ss_pred CCEEEEecCCCCCcHH--H-HHhcccccccccceeeeeEEEEEeccch-HHHHhhhccCCChhHHHHHH-----hhcCEE
Q 025133 121 LDHILLETTGLANPAP--L-ASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQI-----AFADVV 191 (257)
Q Consensus 121 ~~~ilIDt~G~~~~~~--~-~~~~~~~~~~~~~~~~~~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~ql-----~~~~vi 191 (257)
..+.+.||+|...... + ... .+ ..++.+++|+|.... ...... +...+..+ ..+.++
T Consensus 46 v~LqIWDTAGQErf~~~~l~~~~-----yy---r~a~~~IlV~Ditd~~~~~~~~------l~~~l~~~~~~~~~ipill 111 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEPSYDSER-----LF---KSVGALVYVIDSQDEYINAITN------LAMIIEYAYKVNPSINIEV 111 (331)
T ss_dssp SCEEEEECCSCSSSCCCSHHHHH-----HH---TTCSEEEEECCCSSCTTHHHHH------HHHHHHHHHHHCTTCEEEE
T ss_pred EEEEEEECCCchhccchhhhhhh-----hc---cCCCEEEEEEECCchHHHHHHH------HHHHHHHHhhcCCCCcEEE
Confidence 4578999999765421 1 111 11 246789999999863 111111 11122221 234577
Q ss_pred EEeCCCCCCcCCCcchHHHHHHHH-HHhCC------CCEEE-EeecCCcChhhhhcCc
Q 025133 192 ILNKVDLVSPERSGDSLDELEKEI-HEINS------LAHVI-RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 192 vlNK~D~~~~~~~~~~l~~~~~~l-~~~~~------~a~i~-~s~~~~~~~~~l~~~~ 241 (257)
+.||+|+.+++++......+.... +++.. ....+ .|++. .++.+.+..+
T Consensus 112 vgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~i 168 (331)
T 3r7w_B 112 LIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRI 168 (331)
T ss_dssp ECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHH
T ss_pred EEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHH
Confidence 889999987643111112222222 12222 34455 46655 5776665544
No 229
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.05 E-value=1.8e-06 Score=73.84 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=39.9
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45579999999999887777666554 7999999999999999999863
No 230
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=98.04 E-value=0.00013 Score=59.24 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=76.9
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHHH
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l~ 112 (257)
.+..+..|+||||+.-.|... ..| ++.++..|+.... . ..... .+ ++...+ ..+ .+.
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~--~-~~~~~-~~---------l~~~vi----~~~---~l~ 62 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA--T-GWGKR-GS---------LPFKVV----DER---QAA 62 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH--H-HHHHH-SC---------CSSEEE----EGG---GHH
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH--H-HHhcC-CC---------CCccee----CHH---HHH
Confidence 344677899999999999753 558 9999998886411 1 11110 00 000001 111 233
Q ss_pred HHHHhcCCCCEEEEecCCC-CCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCE
Q 025133 113 QLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADV 190 (257)
Q Consensus 113 ~~~~~~~~~~~ilIDt~G~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~v 190 (257)
.+ ...+|+|+||||+. ....... . ...+|.++.++.+....-..-. .+...+.++ .....
T Consensus 63 ~l---~~~yD~viiD~p~~~~~~~~~~-~---------l~~aD~viiv~~~~~~~~~~~~-----~~~~~l~~~~~~~~~ 124 (209)
T 3cwq_A 63 KY---APKYQNIVIDTQARPEDEDLEA-L---------ADGCDLLVIPSTPDALALDALM-----LTIETLQKLGNNRFR 124 (209)
T ss_dssp HH---GGGCSEEEEEEECCCSSSHHHH-H---------HHTSSEEEEEECSSHHHHHHHH-----HHHHHHHHTCSSSEE
T ss_pred Hh---hhcCCEEEEeCCCCcCcHHHHH-H---------HHHCCEEEEEecCCchhHHHHH-----HHHHHHHhccCCCEE
Confidence 32 35689999999997 5443221 1 1235789999988754321110 012233332 23456
Q ss_pred EEEeCCCCCC-cCCCcchHHHHHHHHHH
Q 025133 191 VILNKVDLVS-PERSGDSLDELEKEIHE 217 (257)
Q Consensus 191 ivlNK~D~~~-~~~~~~~l~~~~~~l~~ 217 (257)
+|+|+.+.-. .. ...+.+.+++
T Consensus 125 vv~N~~~~~~~~~-----~~~~~~~l~~ 147 (209)
T 3cwq_A 125 ILLTIIPPYPSKD-----GDEARQLLTT 147 (209)
T ss_dssp EEECSBCCTTSCH-----HHHHHHHHHH
T ss_pred EEEEecCCccchH-----HHHHHHHHHH
Confidence 8899998654 21 3455566665
No 231
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.01 E-value=2.6e-06 Score=70.43 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=38.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++++|++|||||||++.|..-
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999887677666554 7999999999999999999853
No 232
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.01 E-value=8.5e-05 Score=64.05 Aligned_cols=182 Identities=17% Similarity=0.190 Sum_probs=86.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCceeeccchhHH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
..+++++|++||||||+++.|... ..+.++.+...+... ......+.... ..++.+ . ...... ........
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r-~~a~~ql~~~~~~~~i~~---v-~q~~~~-~~~~~~v~ 173 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR-AAASDQLEIWAERTGCEI---V-VAEGDK-AKAATVLS 173 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC-HHHHHHHHHHHHHHTCEE---E-CCC--C-CCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc-hhHHHHHHHHHHhcCceE---E-EecCCc-cCHHHHHH
Confidence 348999999999999999999763 236677777666432 11000000000 000000 0 000000 00000122
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhcc-ccccccc--ceeeeeEEEEEeccchHHHHhhhccCCChhHHHHH
Q 025133 109 QALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~-~~~~~~~--~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (257)
+.+.... ..+.+.+++||.|+.+. ......+. ....+.. ....+.+++|+||....+.... ...+.+
T Consensus 174 e~l~~~~--~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-------~~~~~~ 244 (302)
T 3b9q_A 174 KAVKRGK--EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-------AREFNE 244 (302)
T ss_dssp HHHHHHH--HTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-------HHHHHH
T ss_pred HHHHHHH--HcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-------HHHHHH
Confidence 2222111 23567899999997642 22222221 0001111 1234567899998776654332 112222
Q ss_pred HhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 185 l~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
-....+++++|.|.... ............ .+|..-..++. ++++
T Consensus 245 ~~g~t~iiiThlD~~~~------~g~~l~~~~~~~--~pi~~i~~Ge~-~~dl 288 (302)
T 3b9q_A 245 VVGITGLILTKLDGSAR------GGCVVSVVEELG--IPVKFIGVGEA-VEDL 288 (302)
T ss_dssp HTCCCEEEEECCSSCSC------THHHHHHHHHHC--CCEEEEECSSS-GGGE
T ss_pred hcCCCEEEEeCCCCCCc------cChheehHHHHC--CCEEEEeCCCC-hhhc
Confidence 22357899999886532 244444444443 24554444432 4443
No 233
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.01 E-value=3.9e-06 Score=78.76 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.0
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+..+++|+|+||+|||||+|+|++
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcC
Confidence 34667899999999999999999995
No 234
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.99 E-value=2.9e-06 Score=70.90 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=38.8
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++++|+++..+.+.+.- +++++|++|||||||++.|...
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999887666665543 7999999999999999999853
No 235
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.99 E-value=3.3e-05 Score=65.58 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=31.6
Q ss_pred ceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~-~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+..+++|+|. +|+||||+.-.|... ..|+++.+|..|+.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4568888876 899999999998653 46899999998865
No 236
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.99 E-value=3.7e-06 Score=71.38 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=39.5
Q ss_pred cEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++++++.|+++..+.+.+.- +++++|++|||||||++.|..
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 479999999999998877766554 799999999999999999976
No 237
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.98 E-value=3e-06 Score=71.52 Aligned_cols=45 Identities=38% Similarity=0.474 Sum_probs=38.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++++|++|||||||++.|..-
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999887766655443 7999999999999999999853
No 238
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.98 E-value=2.6e-06 Score=72.08 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=38.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|++...+.+.+.- +++|+|++|||||||++.|..-
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 59999999999887777666554 7999999999999999999853
No 239
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.94 E-value=5.2e-05 Score=66.98 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=86.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-CCCceeeeeeecCCCc-eeeccchhH
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGC-ICCTVKHSL 107 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gc-icc~~~~~~ 107 (257)
.-+++++|++||||||+++.|... ..+.++.+...+... ......+.... ..++.+ . ..... . ......
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r-~~a~eql~~~~~r~~i~~---v-~q~~~~~--~p~~tv 229 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR-AAASDQLEIWAERTGCEI---V-VAEGDKA--KAATVL 229 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC-HHHHHHHHHHHHHHTCEE---E-CCSSSSC--CHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc-cchhHHHHHHHHhcCeEE---E-Eeccccc--ChhhhH
Confidence 348999999999999999999763 236677777666432 11000000000 000000 0 00000 0 000011
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCc-HHHHHhccc-ccccc--cceeeeeEEEEEeccchHHHHhhhccCCChhHHHH
Q 025133 108 VQALEQLVQRKERLDHILLETTGLANP-APLASVLWL-DDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (257)
Q Consensus 108 ~~~l~~~~~~~~~~~~ilIDt~G~~~~-~~~~~~~~~-~~~~~--~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (257)
.+.+.... ..+.+.+++||.|..+. ......+.. ...+. -....+.+++|+|+...++.... ...+.
T Consensus 230 ~e~l~~~~--~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-------~~~~~ 300 (359)
T 2og2_A 230 SKAVKRGK--EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-------AREFN 300 (359)
T ss_dssp HHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-------HHHHH
T ss_pred HHHHHHHH--hCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-------HHHHH
Confidence 22222111 23567899999997653 233222210 00111 01234567999998766654332 11122
Q ss_pred HHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEeecCCcChhhh
Q 025133 184 QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEV 237 (257)
Q Consensus 184 ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~~~~~~~~~l 237 (257)
+-....+++++|.|.... ............ .+|.....++ .+++|
T Consensus 301 ~~~g~t~iiiThlD~~~~------gG~~lsi~~~~~--~pI~~ig~Ge-~~~Dl 345 (359)
T 2og2_A 301 EVVGITGLILTKLDGSAR------GGCVVSVVEELG--IPVKFIGVGE-AVEDL 345 (359)
T ss_dssp HHTCCCEEEEESCTTCSC------THHHHHHHHHHC--CCEEEEECSS-SGGGE
T ss_pred HhcCCeEEEEecCccccc------ccHHHHHHHHhC--CCEEEEeCCC-ChHhc
Confidence 222357899999886533 233334444433 2455444443 24544
No 240
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.93 E-value=3.9e-06 Score=71.21 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=38.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.++- +++|+|++|||||||++.|..
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999877777666553 799999999999999999985
No 241
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.92 E-value=5.1e-06 Score=70.81 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=37.4
Q ss_pred cEEEEccccccccCcc-cCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSH-ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++++|++.. .+.+.++- +++|+|++|||||||++.|..
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3799999999997643 66665443 799999999999999999975
No 242
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.92 E-value=9e-05 Score=63.76 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=31.6
Q ss_pred ceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~-~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
...+++|+|. +|+||||+.-.|... ..|+++.+|..|+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4568888886 799999999998653 45899999998873
No 243
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.91 E-value=3.8e-06 Score=71.17 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=38.5
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|+++.|+++..+.+.+.- +++|+|++|||||||++.|..-
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999887777666553 7999999999999999999853
No 244
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.90 E-value=8.6e-05 Score=61.22 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=29.8
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
++|+|..|+||||+.-.|... ..|+++.++..|++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 455999999999999999753 56899999999885
No 245
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.90 E-value=5.4e-06 Score=69.61 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=37.9
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|+++..+.+.+.- +++++|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999887677665543 799999999999999999985
No 246
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.90 E-value=4.3e-06 Score=70.57 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=38.1
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999887777665543 7999999999999999999853
No 247
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.89 E-value=6.9e-06 Score=69.50 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..++++|.+|+|||||+|+|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 4689999999999999999994
No 248
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.86 E-value=6.8e-06 Score=68.69 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=35.8
Q ss_pred EEEccccccc-cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++.| +++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 7889999999 555566655443 7999999999999999999853
No 249
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.84 E-value=7.5e-06 Score=68.21 Aligned_cols=45 Identities=18% Similarity=0.451 Sum_probs=36.8
Q ss_pred EEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|++ +..+.+.+.. +++|+|++|||||||++.|+..
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999973 4556655543 7999999999999999999763
No 250
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.84 E-value=6.1e-06 Score=67.76 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=37.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++.|++ ..+.+.++- +++++|++|||||||++.|...
T Consensus 10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999987 766666554 6999999999999999999853
No 251
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.84 E-value=9.8e-06 Score=71.49 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCcEEEEccccccc-cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++++++++++| ++...+.+.+.- ++++.|++|||||||++.|..
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45679999999999 776666655443 799999999999999999975
No 252
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.84 E-value=0.00014 Score=62.10 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=77.7
Q ss_pred ceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEecCCCcc-c----ccch-----hhhhcCC--CCcee----eee
Q 025133 31 SVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEFGEE-I----GVER-----AMINEGE--GGALV----EEW 91 (257)
Q Consensus 31 ~~~vv~i~G~-~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~-~----~~d~-----~~~~~~~--~~~~~----~~~ 91 (257)
+..+++|+|. +|+||||+.-.|... ..|+++.+|..|+... . +.+. ..+.... ..... ...
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 3456766665 899999999998653 5689999999987530 1 1110 0011000 00000 011
Q ss_pred eecCCCceeec-----cchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchH
Q 025133 92 VELANGCICCT-----VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 166 (257)
Q Consensus 92 ~~l~~gcicc~-----~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~ 166 (257)
..++.|..... ....+...+..+ ...+|+||||||+.......... ...+|.+++|+.+....
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~~l---~~~yD~VIIDtpp~~~~~da~~l---------~~~aD~vllVv~~~~~~ 238 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVNWA---SKNYDLVLIDTPPILAVTDAAIV---------GRHVGTTLMVARYAVNT 238 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHH---HHHCSEEEEECCCTTTCTHHHHH---------TTTCSEEEEEEETTTSB
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHHHH---HhCCCEEEEcCCCCcchHHHHHH---------HHHCCeEEEEEeCCCCc
Confidence 22222222111 012333333333 23689999999996543222111 12358899999887432
Q ss_pred HH-HhhhccCCChhHHHHHHhh-cCEEEEeCCCCCC
Q 025133 167 FQ-IDKYRHLSSYPEAIHQIAF-ADVVILNKVDLVS 200 (257)
Q Consensus 167 ~~-~~~~~~~~~~~~~~~ql~~-~~vivlNK~D~~~ 200 (257)
.. ... ..+.+.+.+. ..-+|+||++.-.
T Consensus 239 ~~~~~~------~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 239 LKEVET------SLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HHHHHH------HHHHHHHTTCCCCEEEEEEECCCC
T ss_pred HHHHHH------HHHHHHhCCCCEEEEEEcCccccc
Confidence 21 111 1223333332 3468899987554
No 253
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.83 E-value=7.4e-06 Score=72.36 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=39.0
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|+++.|++...+.+.+.- +++++|++|||||||++.|..-
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 68999999999988777766554 7999999999999999999863
No 254
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.82 E-value=8.3e-06 Score=68.65 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=37.9
Q ss_pred EEEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+ ++..+.+.+.- +++++|++|||||||++.|...
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 689999999998 66666665543 7999999999999999999864
No 255
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.81 E-value=1.1e-05 Score=68.68 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=37.7
Q ss_pred cEEEEccccccccC---cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++++++.|++ +..+.+.++- +++|+|++|||||||++.|...
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999976 4566655443 7999999999999999999863
No 256
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.81 E-value=0.00045 Score=56.83 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=29.8
Q ss_pred eeEEEEE-ecCCCcHHHHHHHHHcc--CC-CCeEEEEecCCC
Q 025133 32 VGVTVIT-GFLGAGKSTLVNYILNG--KH-GKRIAVILNEFG 69 (257)
Q Consensus 32 ~~vv~i~-G~~gsGKSTli~~Ll~~--~~-~~~v~ii~~~~g 69 (257)
..++.|+ +..|+||||+.-.|... .. |+++.++..|++
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4555555 56899999999999653 45 999999999976
No 257
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.80 E-value=1.2e-05 Score=66.69 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=36.7
Q ss_pred EEEEcccccccc--CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+ ++..+.+.+.- +++|+|++|||||||++.|+..
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 689999999995 34556555443 7999999999999999999864
No 258
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.79 E-value=1.5e-05 Score=71.19 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=39.1
Q ss_pred CCCcEEEEccccccc--cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.-.+++++++++| ++...+.+.++- +++++|++|||||||++.|..
T Consensus 15 ~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp SSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 344579999999999 555666666544 799999999999999999985
No 259
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.79 E-value=8.7e-06 Score=69.00 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=36.2
Q ss_pred EEEEcccccccc--C---cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFS--N---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~--~---~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++.|+ + +..+.+.+.- +++++|++|||||||++.|..-
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 588999999997 3 3455555443 7999999999999999999753
No 260
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.78 E-value=1e-05 Score=67.82 Aligned_cols=45 Identities=24% Similarity=0.337 Sum_probs=36.3
Q ss_pred EEEEccccccc--cCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~--~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++++++| +++..+.+.+.- +++|+|++|||||||++.|...
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999 345566655443 7999999999999999999853
No 261
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.76 E-value=0.00039 Score=58.26 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=29.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+.+..+..|+||||+.-.|... ..|+++.++..|++.
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3445567889999999998653 458999999999764
No 262
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.75 E-value=1.1e-05 Score=71.73 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=38.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++++++|++...+++.+.- +++++|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 48999999999987777766554 799999999999999999976
No 263
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.75 E-value=8.7e-06 Score=67.73 Aligned_cols=44 Identities=27% Similarity=0.387 Sum_probs=35.0
Q ss_pred EEEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++++.|++. ..+.+.+.- +++|+|++|||||||++.|..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 37889999999753 245555443 799999999999999999985
No 264
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.74 E-value=0.00024 Score=59.35 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=30.6
Q ss_pred ceeEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~-G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+.+++.|+ +..|+||||+.-.|... ..|+++.++..|+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 34567665 56799999999998653 45899999999875
No 265
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.72 E-value=1.6e-05 Score=67.10 Aligned_cols=46 Identities=13% Similarity=0.328 Sum_probs=37.0
Q ss_pred cEEEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++++++.|++. ..+.+.+.- +++|+|++|||||||++.|...
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999863 355554443 7999999999999999999853
No 266
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.72 E-value=1.3e-05 Score=70.95 Aligned_cols=48 Identities=27% Similarity=0.404 Sum_probs=36.7
Q ss_pred CCCcEEEEccccccccCc----ccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 7 DPPLAVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
....+++++++++.|++. ..+.+.++- +++|+|++|||||||++.|..
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 344579999999999753 245555443 799999999999999999976
No 267
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.70 E-value=1.6e-05 Score=70.33 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=37.7
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++|++...+.+.+.- ++++.|++|||||||++.|..-
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 48899999999887666655443 7999999999999999999763
No 268
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.70 E-value=0.00032 Score=58.58 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=28.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+.+..+..|+||||+.-.|... ..|+++.++..|++
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3445677899999999999653 45899999999874
No 269
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.70 E-value=1.7e-05 Score=70.50 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=37.9
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++++|++...+.+.+.- ++++.|++|||||||++.|..-
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 58899999999887666655543 7999999999999999999863
No 270
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.70 E-value=1.5e-05 Score=70.41 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=37.3
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|++...+.+.+.- ++++.|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 48899999999887666655443 799999999999999999976
No 271
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.66 E-value=0.00077 Score=56.41 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=30.9
Q ss_pred CCcceeEEEE-EecCCCcHHHHHHHHHcc-CCCCeEEEEecCCCc
Q 025133 28 DDVSVGVTVI-TGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE 70 (257)
Q Consensus 28 ~~~~~~vv~i-~G~~gsGKSTli~~Ll~~-~~~~~v~ii~~~~g~ 70 (257)
.+.+.++++| .+..|+||||+.-.|... ..|+++.++..|++.
T Consensus 23 ~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 23 DNKKPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQA 67 (267)
T ss_dssp ---CCEEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEEECTTC
T ss_pred CCCCCeEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 3445566655 567889999999988542 268999999999764
No 272
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.65 E-value=2e-05 Score=68.12 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=36.9
Q ss_pred cEEEEccccccccC-cccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
-.+++++++++|++ +..+.+.++- +++|+|++|||||||++.|+.
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 35999999999964 4556655443 799999999999999999976
No 273
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.65 E-value=2e-05 Score=70.02 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=37.4
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|++...+.+.+.- ++++.|++|||||||++.|..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 48999999999887666655443 799999999999999999975
No 274
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.64 E-value=1.8e-05 Score=69.67 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=36.4
Q ss_pred EEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++|++. .+.+.+.- +++++|++|||||||++.|..-
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 7889999999876 66655543 7999999999999999999863
No 275
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.63 E-value=0.00082 Score=54.99 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=28.8
Q ss_pred eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 33 ~vv~i-~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+++.| .+..|+||||+.-.|... ..|+++.++..|++
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 45555 456899999999999653 45899999999874
No 276
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.59 E-value=1.6e-05 Score=70.10 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=37.0
Q ss_pred EEEEccccccccCcc--cCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSH--ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|++.. .+.+.+.- +++++|++|||||||++.|..
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 488999999998866 66555443 799999999999999999976
No 277
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.57 E-value=2.3e-05 Score=66.36 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=35.2
Q ss_pred EEEEccccccccC----cccCCCccee----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSN----SHENDDVSVG----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++++++|++ +..+.+.+.- +++++|++|||||||++.|..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 3688999999976 4555544333 799999999999999999985
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.54 E-value=3.1e-05 Score=64.59 Aligned_cols=42 Identities=24% Similarity=0.231 Sum_probs=33.5
Q ss_pred EEEccccccccCcccCCCcce----eEEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNSHENDDVSV----GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~----~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++|++ .+.+.+. -+++++|++|||||||++.|..-
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999975 2444433 47999999999999999999863
No 279
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.52 E-value=3.6e-05 Score=69.88 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=24.4
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++.+|.|+|++++|||||+|.|+.
T Consensus 63 ~~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 63 RDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TTSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHhh
Confidence 456788999999999999999999985
No 280
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.48 E-value=0.00084 Score=56.94 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=32.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+++++|+|..|+||||+.-.|... ..|+++.++..|++.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 467777899999999999999653 458999999999763
No 281
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.48 E-value=0.001 Score=55.11 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=29.0
Q ss_pred eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 33 ~vv~i-~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
++++| .+..|+||||+.-.|... ..|+++.++..|++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG 42 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 45555 556889999999998653 45899999999983
No 282
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.47 E-value=0.00094 Score=55.83 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=31.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
+++.|+|..|+||||+.-.|... ..|+++.++..|++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 56777899999999999998653 568999999999763
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.45 E-value=1.5e-05 Score=62.28 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=32.8
Q ss_pred EEEccccccccCcccCCC-----cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-----~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...++++.|+....+.. .+-.++++.|++|||||||++.|..
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 334677888876555444 3334899999999999999999985
No 284
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.39 E-value=0.002 Score=54.60 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=28.8
Q ss_pred eEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 33 ~vv~i~-G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
.+++|+ +..|+||||+.-.|... ..|+++.++..|+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 356554 66899999999999653 4589999999998
No 285
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.33 E-value=0.00011 Score=61.64 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=32.7
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++++++. ..+.+.+.- +++++|++|||||||++.|...
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 6888999887 345544443 7999999999999999999853
No 286
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.33 E-value=0.0014 Score=55.81 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.0
Q ss_pred eEEEEEe---cCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 33 GVTVITG---FLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G---~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++++|++ ..|+||||+.-.|... ..|+++.++..|+..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3555554 8999999999998653 468999999998764
No 287
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.33 E-value=0.00017 Score=67.64 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=37.5
Q ss_pred cEEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
-.++++|++++|++ +..+.+.+.. +++++|++|||||||++.|++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999975 4566665543 799999999999999999986
No 288
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.28 E-value=0.00016 Score=71.41 Aligned_cols=47 Identities=23% Similarity=0.133 Sum_probs=38.1
Q ss_pred CCcEEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.-..+...++++.|+++..+.+.++- +++++|++|||||||++.|..
T Consensus 432 ~~~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 432 EGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp SSCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34456666999999987777666554 799999999999999999983
No 289
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.20 E-value=0.00018 Score=56.83 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++|||||||++.|+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999999864
No 290
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.15 E-value=0.00023 Score=56.29 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|++||||||+++.|...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999864
No 291
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.13 E-value=0.00029 Score=66.06 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=37.3
Q ss_pred cEEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-.++++|++++|++ +..+.+.+.- +++++|++|||||||++.|.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 35899999999974 4556555443 7999999999999999999863
No 292
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.13 E-value=0.00038 Score=65.54 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=37.4
Q ss_pred EEEEccccccccC-cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++++|++ +..+.+.+.. +++++|++|||||||++.|++.
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999975 4466666543 7999999999999999999863
No 293
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.13 E-value=0.00026 Score=57.20 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=23.7
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHccC
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNGK 56 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~~ 56 (257)
...+-.+++|+||+|||||||++.|+...
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34455689999999999999999998753
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.11 E-value=0.00024 Score=56.79 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|++||||||+++.|...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 48999999999999999999864
No 295
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.09 E-value=0.00027 Score=54.76 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++||||||+.+.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
No 296
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.08 E-value=0.0004 Score=54.62 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=28.1
Q ss_pred EEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHH
Q 025133 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
+.++|+ +.|++....-.....+++|+|++||||||++.+|.
T Consensus 7 l~i~nf-~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 7 LELKGF-KSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEESB-GGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHH
T ss_pred EEEeCe-EeecCccEEEecCCCcEEEECCCCCCHHHHHHHHH
Confidence 455665 34432233233444589999999999999999995
No 297
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.08 E-value=0.00026 Score=54.67 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=19.0
Q ss_pred eEEEEEecCCCcHHHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYI 52 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~L 52 (257)
++++++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 298
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.07 E-value=0.00023 Score=66.19 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=30.8
Q ss_pred ccccccccCcccCCC--ccee----EEEEEecCCCcHHHHHHHHHc
Q 025133 15 DETTHEFSNSHENDD--VSVG----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~--~~~~----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.+|+|+. ..++- .++| +++++|++|||||||++.|..
T Consensus 3 ~~~~~~~~~-~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 3 GEVIHRYKV-NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCEEEESST-TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCceecCC-CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899998 33443 3333 899999999999999999985
No 299
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.06 E-value=0.00023 Score=56.56 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|++||||||+++.|+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999853
No 300
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.06 E-value=0.00027 Score=66.45 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=36.6
Q ss_pred EEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++++|.+ +..+.+.+.. +++++|++|||||||++.|++.
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999954 4456655443 7999999999999999999863
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.05 E-value=0.00025 Score=56.88 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++|+|++||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 302
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=97.05 E-value=0.011 Score=49.17 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=29.9
Q ss_pred cCCCcceeEEEEEec-CCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 26 ENDDVSVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 26 ~~~~~~~~vv~i~G~-~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
...+.+.+.++|+|. +|+|||++.-.|+.. +.|.+++...
T Consensus 15 ~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 15 ENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp ----CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 344556788999998 999999999988764 5588888875
No 303
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=97.03 E-value=0.04 Score=44.32 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=24.7
Q ss_pred eEEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 33 GVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 33 ~vv~i~G-~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
++++|+| ..|+||||+.-.|... ..|+++.++.
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 3556666 5899999999999753 4588988863
No 304
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.02 E-value=0.00035 Score=55.41 Aligned_cols=21 Identities=48% Similarity=0.651 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|++|||||||++.|+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 305
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.01 E-value=4.9e-05 Score=65.65 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=32.7
Q ss_pred EEEccccccccCcccCCCc--ce---eEEEEEecCCCcHHHHHHHHHc
Q 025133 12 VRIDETTHEFSNSHENDDV--SV---GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~--~~---~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++++.+.|+ ...+.+. .+ .+++|+|++|||||||++.|+.
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 67789999887 3444333 22 2899999999999999999985
No 306
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.01 E-value=0.0003 Score=65.93 Aligned_cols=45 Identities=27% Similarity=0.481 Sum_probs=36.6
Q ss_pred EEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++++|++ +..+.+.+.. .++++|++|||||||++.|++.
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 5899999999975 3455555443 7999999999999999999863
No 307
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.01 E-value=0.00028 Score=56.76 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..++|+|++|||||||++.|+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999985
No 308
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.00 E-value=0.0003 Score=60.22 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=25.4
Q ss_pred EEEEccccccccCcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++++. .+..+.+.+.- +++|+|++|||||||++.|...
T Consensus 40 ~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 40 SLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5788999875 23455554443 7999999999999999999763
No 309
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.00 E-value=0.0013 Score=54.00 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=31.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+-.+++++|++|+||||++-.++.+ ..+.++.++....+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d 51 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID 51 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC
Confidence 3468999999999999988887653 45788888876654
No 310
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.99 E-value=0.00029 Score=55.56 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=27.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
+++++|+|++|||||||++.|+.. ..+.+.+.+..+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 578999999999999999999864 2355567666553
No 311
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.98 E-value=0.00038 Score=56.22 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++|+|++|||||||++.|...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 8999999999999999999753
No 312
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.97 E-value=0.00033 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+.+.|..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.96 E-value=0.00042 Score=54.88 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999985
No 314
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.95 E-value=0.00041 Score=56.11 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGK 56 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~ 56 (257)
..+++|+||+||||||+++.|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998753
No 315
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.95 E-value=0.00038 Score=56.22 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=27.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC--CCCeEEEEecC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNE 67 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~--~~~~v~ii~~~ 67 (257)
+..+++|+|++|||||||++.|.... .|...+.+..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 34589999999999999999997531 13456777654
No 316
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.95 E-value=0.00042 Score=56.83 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-.+++|+||+|||||||++.|+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 348999999999999999999864
No 317
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.94 E-value=0.00043 Score=54.27 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.1
Q ss_pred eEEEEEecCCCcHHHHHHHHH
Q 025133 33 GVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll 53 (257)
.+++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 489999999999999999865
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.93 E-value=0.00049 Score=54.23 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=25.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEE
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI 64 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii 64 (257)
++++|.|++||||||+.+.|.+. ..+..+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 57999999999999999999764 234445555
No 319
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.92 E-value=0.00047 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|++||||||+.+.|.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 320
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.92 E-value=0.0041 Score=54.71 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=51.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
++.|.|++|+|||||+..++.. ..+.++.++..+..... .-...+........+ .+.....++...+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~-~ra~rlgv~~~~l~i----------~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP-VYAKNLGVDLKSLLI----------SQPDHGEQALEIV 131 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH-HHHHHHTCCGGGCEE----------ECCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch-HHHHHcCCchhhhhh----------hhccCHHHHHHHH
Confidence 8999999999999999999764 34677888877643210 000001000000000 0112233455555
Q ss_pred HHHHHhcCCCCEEEEecCCCCCc
Q 025133 112 EQLVQRKERLDHILLETTGLANP 134 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~ 134 (257)
..++. ...+++++||......+
T Consensus 132 ~~l~~-~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 132 DELVR-SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHH-TSCCSEEEEECTTTCCC
T ss_pred HHHhh-hcCCCeEEehHhhhhcC
Confidence 55543 46799999998775544
No 321
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.90 E-value=0.00045 Score=55.24 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHccCC
Q 025133 35 TVITGFLGAGKSTLVNYILNGKH 57 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~ 57 (257)
++|+||+|||||||+++|+...+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987644
No 322
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.90 E-value=0.00046 Score=64.18 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=32.6
Q ss_pred CcEEEE-ccccccccCcc-cCCCcc-e---eEEEEEecCCCcHHHHHHHHHcc
Q 025133 9 PLAVRI-DETTHEFSNSH-ENDDVS-V---GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~-~~~~~~-~---~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++..++ ++++++|++.. .+.+.+ + -+++++|++|||||||++.|...
T Consensus 18 ~~~~~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 18 SHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp ------CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCChhHhcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445666 68999998753 454443 2 28999999999999999999863
No 323
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.90 E-value=0.00033 Score=65.91 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=35.9
Q ss_pred EEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 12 VRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 12 ~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++|++++|+++ ..+.+.+.. +++++|++|||||||++.|.+.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999753 355555443 7999999999999999999863
No 324
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.89 E-value=0.00016 Score=60.61 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=23.8
Q ss_pred EEEEccc-cccc-cCcccCCCc-----c---eeEEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDET-THEF-SNSHENDDV-----S---VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~-~~~~-~~~~~~~~~-----~---~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++++ ++.| ++...+.+. . -..++++|++||||||+.+.|..
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5888999 9998 554444332 2 45899999999999999999974
No 325
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.88 E-value=0.00036 Score=68.94 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=37.4
Q ss_pred cEEEEccccccccC--cccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 10 LAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|+++.|++ +..+.+.+.- +++|+|++|||||||++.|...
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999975 3455555443 7999999999999999999864
No 326
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.87 E-value=0.00053 Score=56.41 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=26.0
Q ss_pred EEEEEecCCCcHHHHHHHHH--cc-CCCCeEEEEecC
Q 025133 34 VTVITGFLGAGKSTLVNYIL--NG-KHGKRIAVILNE 67 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll--~~-~~~~~v~ii~~~ 67 (257)
+++++|++|||||||++.|+ .. .++....++..+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 89999999999999999987 32 335555555544
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.86 E-value=0.00096 Score=53.59 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=26.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
..+++|+|++||||||+++.|....+ .+.++..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCC
Confidence 34899999999999999999985311 46677655
No 328
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.86 E-value=0.00062 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999985
No 329
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.85 E-value=0.0006 Score=54.89 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=26.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~ 68 (257)
.+++|+|++|||||||++.|.... +.+++++..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~-~~~i~~v~~d~ 41 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL-GERVALLPMDH 41 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-GGGEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecCc
Confidence 479999999999999999997521 01377777653
No 330
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.84 E-value=0.00051 Score=55.24 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGK 56 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~ 56 (257)
+..+++|+|++||||||+++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44578999999999999999998653
No 331
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.84 E-value=0.00059 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+++.|..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999974
No 332
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.84 E-value=0.00057 Score=56.70 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++|+|++||||||+++.|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999965
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.83 E-value=0.0006 Score=54.47 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++||||||+++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999865
No 334
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.82 E-value=0.0002 Score=62.88 Aligned_cols=46 Identities=28% Similarity=0.285 Sum_probs=36.5
Q ss_pred CcEEEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+-.++.+++++.|. +..+++.. ++ +++|+|++|+|||||++.|++.
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34577889999997 44555555 44 7999999999999999999874
No 335
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.82 E-value=0.00048 Score=56.23 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHccCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKH 57 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~ 57 (257)
+++|+|++|||||||++.|+...+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 789999999999999999986433
No 336
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.81 E-value=0.00079 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+++.|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
No 337
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.78 E-value=0.00058 Score=64.40 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=32.5
Q ss_pred ccccccccCcc-cCCCcc-e---eEEEEEecCCCcHHHHHHHHHcc
Q 025133 15 DETTHEFSNSH-ENDDVS-V---GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 15 ~~~~~~~~~~~-~~~~~~-~---~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++|++.. .+.+.+ + -+++++|++|||||||++.|...
T Consensus 95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 88999998753 444443 2 28999999999999999999863
No 338
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.78 E-value=0.00091 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 339
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.75 E-value=0.0039 Score=54.35 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=34.0
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHc--cCCCCeEEEEecCCCc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGE 70 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~--~~~~~~v~ii~~~~g~ 70 (257)
....+++++|..|+||||+.-.|.. +..|+++.++..|+..
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 3456889999999999999999865 3569999999999653
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.73 E-value=0.00086 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 341
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.73 E-value=0.00085 Score=53.68 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999999985
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.00097 Score=52.62 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=26.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
+..++++.|++||||||+++.|... ..+.++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 4468999999999999999999753 2344554543
No 343
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.72 E-value=0.0039 Score=54.67 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=50.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
++.|.|++|+|||||+..++.. ..+.++.++..+... +...... -+...+..... ......++...+
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~----~~~~a~~--lG~~~~~l~i~-----~~~~~e~~l~~~ 131 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL----DPEYAKK--LGVDTDSLLVS-----QPDTGEQALEIA 131 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHH--TTCCGGGCEEE-----CCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc----CHHHHHH--cCCCHHHeEEe-----cCCCHHHHHHHH
Confidence 8999999999999999998753 447788888877432 1111110 00000000000 011223344444
Q ss_pred HHHHHhcCCCCEEEEecCCCCC
Q 025133 112 EQLVQRKERLDHILLETTGLAN 133 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~ 133 (257)
..+.. ..++++++||.+....
T Consensus 132 ~~l~~-~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 132 DMLVR-SGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHT-TTCCSEEEEECGGGCC
T ss_pred HHHHh-cCCCCEEEEcChHhhc
Confidence 44442 4579999999988554
No 344
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.72 E-value=0.00099 Score=53.37 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+..+++|+|++||||||+.+.|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
No 345
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.70 E-value=0.00084 Score=55.60 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++|.|++||||||+++.|.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.70 E-value=0.0012 Score=52.71 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
...+..+++|+|++||||||+.+.|.+.
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3445678999999999999999999853
No 347
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.70 E-value=0.0011 Score=53.33 Aligned_cols=34 Identities=29% Similarity=0.258 Sum_probs=29.6
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~~ 68 (257)
+++++|++|+|||||+..++. ..+.++.++..+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence 899999999999999999987 4577888888765
No 348
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.69 E-value=0.00055 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=15.9
Q ss_pred eEEEEEecCCCcHHHHHHHHH-cc
Q 025133 33 GVTVITGFLGAGKSTLVNYIL-NG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll-~~ 55 (257)
.+++|+|++||||||+++.|. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 389999999999999999998 64
No 349
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.68 E-value=0.00086 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++|||||||++.|+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 48999999999999999999863
No 350
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.68 E-value=0.0059 Score=53.89 Aligned_cols=85 Identities=24% Similarity=0.253 Sum_probs=51.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc-CC--CCceeeeeeecCCCceeeccchhHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GE--GGALVEEWVELANGCICCTVKHSLV 108 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~-~~--~~~~~~~~~~l~~gcicc~~~~~~~ 108 (257)
++.|.|++|+|||||+..++.. ..+.+++++..+... +...... +. ....+ .......++.
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~----~~~~a~~~g~d~~~l~i----------~~~~~~e~~l 141 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL----DPVYARALGVNTDELLV----------SQPDNGEQAL 141 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHTTCCGGGCEE----------ECCSSHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh----hHHHHHHcCCCHHHcee----------ecCCcHHHHH
Confidence 7899999999999999998753 347789999987542 1111110 00 00100 0011234455
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCC
Q 025133 109 QALEQLVQRKERLDHILLETTGLAN 133 (257)
Q Consensus 109 ~~l~~~~~~~~~~~~ilIDt~G~~~ 133 (257)
..+..+.. ..++++|+||..+...
T Consensus 142 ~~l~~l~~-~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 142 EIMELLVR-SGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHT-TTCCSEEEEECTTTCC
T ss_pred HHHHHHHh-cCCCCEEEEeChHHhc
Confidence 55555543 4679999999998554
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.65 E-value=0.001 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.65 E-value=0.0013 Score=56.99 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=27.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc-C---CCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG-K---HGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~-~---~~~~v~ii~~~ 67 (257)
.-+++|+|++|||||||++.|... . .+.++.++..|
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 348999999999999999998653 1 24567777765
No 353
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=0.001 Score=53.22 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 354
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.63 E-value=0.00097 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+.++++|++||||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
No 355
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.62 E-value=0.001 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++++++|++||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999753
No 356
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.62 E-value=0.0011 Score=53.73 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++|+|++|||||||++.|+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999975
No 357
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.62 E-value=0.0011 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 358
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.62 E-value=0.00087 Score=54.50 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=25.6
Q ss_pred cccCcccCCCcce-eEEEEEecCCCcHHHHHHHHHc
Q 025133 20 EFSNSHENDDVSV-GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 20 ~~~~~~~~~~~~~-~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.|+++..+++... .+++++|++|||||||++.|..
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444444444433 3899999999999999999974
No 359
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.61 E-value=0.0017 Score=61.15 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=42.1
Q ss_pred CCcEEEEccccccccCcccCCCc-----ceeEEEEEecCCCcHHHHHHHHHcc-CC-------CCeEEEEecCC
Q 025133 8 PPLAVRIDETTHEFSNSHENDDV-----SVGVTVITGFLGAGKSTLVNYILNG-KH-------GKRIAVILNEF 68 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~vv~i~G~~gsGKSTli~~Ll~~-~~-------~~~v~ii~~~~ 68 (257)
.+.+++++++++.|++.. +... +--+++|+|++|||||||++.|... .+ ..+++++..++
T Consensus 354 ~~~~l~~~~l~~~~~~~~-l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~ 426 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYI 426 (607)
T ss_dssp CCEEEEECCEEEECSSCE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSC
T ss_pred CceEEEEeceEEEecceE-EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCc
Confidence 356799999999987632 2221 1238999999999999999999863 11 23566665553
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.61 E-value=0.0011 Score=53.88 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 361
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.59 E-value=0.0014 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+.+.|.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 362
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.59 E-value=0.0015 Score=52.45 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=26.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
+..+++|+|++||||||+++.|... ..+.++.++..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3458999999999999999999753 124455555433
No 363
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.57 E-value=0.0018 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+..+++++|++||||||+.+.|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 364
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.57 E-value=0.00037 Score=63.15 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=36.4
Q ss_pred CcEEEEcccccccc-CcccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+-.++++++++.|. +..++++. .+ +++|+|++|+|||||++.|.+.
T Consensus 129 ~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34577899999997 44555555 44 7999999999999999999864
No 365
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.57 E-value=0.0013 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++++|+|++||||||+.+.|.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
No 366
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.57 E-value=0.0021 Score=54.69 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=28.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~---~~~~~v~ii~~~~ 68 (257)
+++|+|++|+|||||++.|+.. ..|.++.++..+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 8999999999999999999753 3366788887664
No 367
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.55 E-value=0.0012 Score=53.36 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~ 68 (257)
+++++|++|||||||++.++.. ..+.++.++..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 8999999999999999999753 2356777777664
No 368
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.55 E-value=0.0013 Score=54.97 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++|+|++||||||+.+.|...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57999999999999999999753
No 369
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.55 E-value=0.0017 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 370
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.55 E-value=0.0014 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+.++++|++||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 371
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.54 E-value=0.0073 Score=53.10 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=51.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCceeeeeeecCCCceeeccchhHHHHH
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~~~~~l 111 (257)
++.|.|++|+|||||+..++.. ..+.+++++..+... +......- +...+...... ......+...+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~----~~~~a~~~--g~~~~~l~i~~-----~~~~e~~~~~~ 133 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPIYARKL--GVDIDNLLCSQ-----PDTGEQALEIC 133 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHHHHHHT--TCCGGGCEEEC-----CSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc----cHHHHHHc--CCChhheeeeC-----CCCHHHHHHHH
Confidence 8999999999999999998753 347788888876432 11111110 00000000000 11123444444
Q ss_pred HHHHHhcCCCCEEEEecCCCCCc
Q 025133 112 EQLVQRKERLDHILLETTGLANP 134 (257)
Q Consensus 112 ~~~~~~~~~~~~ilIDt~G~~~~ 134 (257)
..+.. ..++++|+||..+...+
T Consensus 134 ~~l~~-~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 134 DALAR-SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHH-HTCCSEEEEECGGGCCC
T ss_pred HHHHh-ccCCCEEEEcCHHHhcc
Confidence 44443 46799999999996554
No 372
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.54 E-value=0.001 Score=68.12 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=36.6
Q ss_pred EEEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++|+.++|.++ +++++.+.. .++|+|++|||||||++.|++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 59999999999654 355665544 699999999999999999986
No 373
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.0016 Score=60.43 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=35.8
Q ss_pred CCcEEEEccccccccCccc-CCCcce---eEEEEEecCCCcHHHHHHHHHcc
Q 025133 8 PPLAVRIDETTHEFSNSHE-NDDVSV---GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~~~~---~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+..++++++++.|++... ..+..+ -+++|+|++|||||||++.|...
T Consensus 266 ~~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CCEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred ccceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999998877332 112222 38999999999999999999763
No 374
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0012 Score=62.19 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=29.2
Q ss_pred ccccccccCccc-CCCcc----eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 15 DETTHEFSNSHE-NDDVS----VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~----~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++|+|++... +.... --+++++|++|||||||++.|...
T Consensus 81 ~~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 456778876432 22211 228999999999999999999863
No 375
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.52 E-value=0.001 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 376
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.51 E-value=0.0011 Score=51.49 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|+|++||||||+.+.|..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 377
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.51 E-value=0.0022 Score=57.68 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=34.1
Q ss_pred EEccccccccCcccCCC---cceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEec
Q 025133 13 RIDETTHEFSNSHENDD---VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN 66 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~---~~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~ 66 (257)
.++++.+.++....+.+ .+-.+++|+|++|||||||++.|+.. ....++.++..
T Consensus 145 ~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp CGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred CHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 34555555443322221 23458999999999999999999864 22345555543
No 378
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.49 E-value=0.0015 Score=52.27 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|.|++||||||+.+.|.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 379
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.49 E-value=0.0011 Score=53.01 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++++|++|||||||++.|+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999999975
No 380
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.49 E-value=0.0014 Score=56.74 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=28.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEecCC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEF 68 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~---~~~-~~v~ii~~~~ 68 (257)
.-+++|+|++|||||||++.|... ..| .+++++..++
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 348999999999999999999753 223 5688887664
No 381
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.49 E-value=0.0012 Score=51.55 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++.++|+|++||||||+.+.|..
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999975
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.48 E-value=0.0016 Score=51.86 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCe
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKR 60 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~ 60 (257)
.+++|+|++||||||+.+.|.+.-.|.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~ 32 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANT 32 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCc
Confidence 4799999999999999999987532333
No 383
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.48 E-value=0.0014 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++++|++||||||+.+.|.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 384
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.48 E-value=0.0015 Score=60.73 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=42.4
Q ss_pred CCcEEEEccccccccCcccCCCc-----ceeEEEEEecCCCcHHHHHHHHHcc-CC-------CCeEEEEecCC
Q 025133 8 PPLAVRIDETTHEFSNSHENDDV-----SVGVTVITGFLGAGKSTLVNYILNG-KH-------GKRIAVILNEF 68 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~vv~i~G~~gsGKSTli~~Ll~~-~~-------~~~v~ii~~~~ 68 (257)
.+..++++++++.|++.. +... +--+++|+|++|||||||++.|... .+ ..+++++..++
T Consensus 284 ~~~~l~~~~l~~~~~~~~-l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~ 356 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGSFR-LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYI 356 (538)
T ss_dssp CCEEEEECCEEEEETTEE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSC
T ss_pred CCeEEEEeeEEEEECCEE-EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCC
Confidence 356799999999887632 2221 2238999999999999999999864 21 23566666554
No 385
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.47 E-value=0.0014 Score=52.03 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++|.|++||||||+.+.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999753
No 386
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.47 E-value=0.0014 Score=57.72 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++|+|++|+|||||+|.|+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 8999999999999999999953
No 387
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.46 E-value=0.0069 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 025133 35 TVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++.|++|+|||||++.|...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999864
No 388
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.45 E-value=0.0017 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++|+|++||||||+.+.|.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999763
No 389
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.45 E-value=0.0017 Score=51.08 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 390
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.44 E-value=0.025 Score=49.83 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCcceeEEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 28 DDVSVGVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 28 ~~~~~~vv~i~G-~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
.+.+..+++|+| ..|+||||+.-.|... ..|+++.++..|
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 344566776664 8999999999988653 348899999987
No 391
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.44 E-value=0.0015 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++++|++|||||||+|.|+ .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 389999999999999999998 5
No 392
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.42 E-value=0.0011 Score=51.91 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=17.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++++|++||||||+.+.|.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999753
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.42 E-value=0.0011 Score=53.31 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=24.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
+++|.|++||||||+++.|... ..+.++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 6899999999999999999764 2244444443
No 394
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.42 E-value=0.0029 Score=58.37 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=24.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEe
Q 025133 34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVIL 65 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~-~~~~~v~ii~ 65 (257)
.++|+|++|||||||++.|+.. .+..++..+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 5899999999999999999875 3444444443
No 395
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.41 E-value=0.0016 Score=57.35 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++|||||||++.|+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999763
No 396
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.40 E-value=0.0014 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...+++.|++|+|||||++.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999975
No 397
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.38 E-value=0.0021 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.345 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++|+|++||||||+.+.|.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999763
No 398
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.38 E-value=0.0021 Score=51.02 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+..+++|+|++||||||+.+.|.+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3458999999999999999999864
No 399
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.38 E-value=0.0021 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++||||||+.+.|..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999975
No 400
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.37 E-value=0.0018 Score=51.22 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=24.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+++++|++||||||+++.|.+. ..|..+ +...+++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v-~~~~~~~ 38 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKV-ILKREPG 38 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-E-EEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE-EEeeCCC
Confidence 5899999999999999999764 224444 3344444
No 401
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.36 E-value=0.002 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++|.|++||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 402
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.36 E-value=0.0026 Score=48.74 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.-..+++.|++|+|||||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4558899999999999999999763
No 403
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.36 E-value=0.018 Score=49.72 Aligned_cols=39 Identities=28% Similarity=0.221 Sum_probs=33.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+..+++|+|.=|+||||+.-.|... ..|+|+.++-.|++
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4569999999999999999988653 56999999999974
No 404
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.35 E-value=0.002 Score=55.46 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=26.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc-C---CCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG-K---HGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~-~---~~~~v~ii~~~ 67 (257)
-+++|+|++|||||||++.|... . .+.++.++..+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 48999999999999999999763 2 23456665543
No 405
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.35 E-value=0.0027 Score=51.89 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=28.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+++|.|++|+|||||+..++.. .++.++.++..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 8999999999999998887642 34778888887643
No 406
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.34 E-value=0.0019 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|++||||||+.+.|.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 407
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.34 E-value=0.0004 Score=58.56 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=51.9
Q ss_pred cceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEee
Q 025133 149 SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 228 (257)
Q Consensus 149 ~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~ 228 (257)
...++|.++.|+|+.......... +. .+ ..+.++|+||+|+++.+. .+.+.+.+++.+ .++++|+
T Consensus 18 ~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll---~k~~iivlNK~DL~~~~~----~~~~~~~~~~~g--~~v~iSa 82 (262)
T 3cnl_A 18 LLRLVNTVVEVRDARAPFATSAYG-----VD-FS---RKETIILLNKVDIADEKT----TKKWVEFFKKQG--KRVITTH 82 (262)
T ss_dssp HHTTCSEEEEEEETTSTTTTSCTT-----SC-CT---TSEEEEEEECGGGSCHHH----HHHHHHHHHHTT--CCEEECC
T ss_pred HHhhCCEEEEEeeCCCCCcCcChH-----HH-hc---CCCcEEEEECccCCCHHH----HHHHHHHHHHcC--CeEEEEC
Confidence 445789999999998654332111 11 11 678899999999997532 445555555432 2237888
Q ss_pred cCCcChhhhhcCcc
Q 025133 229 RCQVDLSEVLNCRA 242 (257)
Q Consensus 229 ~~~~~~~~l~~~~~ 242 (257)
.++.++++|+....
T Consensus 83 ~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 83 KGEPRKVLLKKLSF 96 (262)
T ss_dssp TTSCHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHH
Confidence 88888888876553
No 408
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.34 E-value=0.011 Score=51.93 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=29.6
Q ss_pred eEEEE-EecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 33 GVTVI-TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i-~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
++++| .+..|+||||+.-.|... ..|+++.+|..|+..
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~ 42 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQC 42 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence 44444 477899999999998642 469999999999763
No 409
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.34 E-value=0.0023 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++++|.|+|||||+|....|.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 410
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.34 E-value=0.0025 Score=65.29 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=36.5
Q ss_pred EEEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|+.++|.++ ..+.+.+.. .++|+|++|||||||++.|++.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 58999999999753 345555443 7999999999999999999874
No 411
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.33 E-value=0.002 Score=53.57 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+..+++|+|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999975
No 412
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.33 E-value=0.0031 Score=55.53 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++|+|++|||||||++.|+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999975
No 413
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.32 E-value=0.002 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+++|+|++||||||+++.|.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999973
No 414
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.31 E-value=0.0024 Score=54.83 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=52.3
Q ss_pred cceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-Ee
Q 025133 149 SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI-RS 227 (257)
Q Consensus 149 ~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~-~s 227 (257)
....+|.+++|+|+........... .+...+.....+.++|+||+|+.++.+. ...+.+....++.+ .+++ +|
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~---~~l~~~~~~~~~~ilV~NK~DL~~~~~v-~~~~~~~~~~~~~g--~~~~~~S 149 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLD---NMLVVYEYFKVEPVIVFNKIDLLNEEEK-KELERWISIYRDAG--YDVLKVS 149 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHH---HHHHHHHHTTCEEEEEECCGGGCCHHHH-HHHHHHHHHHHHTT--CEEEECC
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHH---HHHHHHHhCCCCEEEEEEcccCCCcccc-HHHHHHHHHHHHCC--CeEEEEE
Confidence 3568899999999985321111100 0222233345677999999999875310 01344444444443 3455 79
Q ss_pred ecCCcChhhhhcCc
Q 025133 228 VRCQVDLSEVLNCR 241 (257)
Q Consensus 228 ~~~~~~~~~l~~~~ 241 (257)
++++.|+++|+...
T Consensus 150 A~~g~gi~~L~~~l 163 (302)
T 2yv5_A 150 AKTGEGIDELVDYL 163 (302)
T ss_dssp TTTCTTHHHHHHHT
T ss_pred CCCCCCHHHHHhhc
Confidence 99999999888665
No 415
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.30 E-value=0.0034 Score=54.57 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++|+|++|||||||++.|+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
No 416
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.28 E-value=0.0021 Score=51.81 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 417
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.28 E-value=0.0025 Score=65.11 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=36.8
Q ss_pred EEEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++|++++|+++ ..+.+.+.. .++++|++|||||||++.|++.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999753 355655443 7999999999999999999863
No 418
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.27 E-value=0.0022 Score=49.63 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.+-+++++|++||||||+.+.|..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999975
No 419
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.26 E-value=0.0044 Score=63.33 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=37.4
Q ss_pred EEEEccccccccCc---ccCCCccee-----EEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++++++.++|+++ ..+++.+.- +++|+|++|||||||++.|.+.
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999764 356666554 7999999999999999999863
No 420
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.26 E-value=0.0023 Score=54.43 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=50.4
Q ss_pred ccceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHH--hhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE
Q 025133 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (257)
Q Consensus 148 ~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql--~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~ 225 (257)
....++|.++.|+|+........ + .+.++ ..+.++|+||+|+++.+. .+.+.+++++.+. ..+.
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~--------~-~l~~~l~~kp~ilVlNK~DL~~~~~----~~~~~~~~~~~g~-~~i~ 84 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRN--------P-MIEDILKNKPRIMLLNKADKADAAV----TQQWKEHFENQGI-RSLS 84 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSC--------H-HHHHHCSSSCEEEEEECGGGSCHHH----HHHHHHHHHTTTC-CEEE
T ss_pred HHHhhCCEEEEEEeCCCCCccCC--------H-HHHHHHCCCCEEEEEECcccCCHHH----HHHHHHHHHhcCC-cEEE
Confidence 34567899999999986433211 1 22222 467899999999997532 3444454543222 2345
Q ss_pred EeecCCcChhhhhcCc
Q 025133 226 RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 ~s~~~~~~~~~l~~~~ 241 (257)
+|+..+.++++++...
T Consensus 85 iSA~~~~gi~~L~~~i 100 (282)
T 1puj_A 85 INSVNGQGLNQIVPAS 100 (282)
T ss_dssp CCTTTCTTGGGHHHHH
T ss_pred EECCCcccHHHHHHHH
Confidence 7888888988876543
No 421
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.25 E-value=0.002 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999975
No 422
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.25 E-value=0.0023 Score=50.08 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999975
No 423
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.25 E-value=0.0093 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.|++|+|||++++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999864
No 424
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.24 E-value=0.0053 Score=52.56 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=50.5
Q ss_pred ceeeeeEEEEEeccchH---HHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEE-
Q 025133 150 AVRLDSIITVVDAKNLL---FQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI- 225 (257)
Q Consensus 150 ~~~~~~vi~vvDa~~~~---~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~- 225 (257)
...+|.+++|+|+.... ..++. +...+.+...+.++|+||+|+.+..+ .++...+.+..+....++
T Consensus 82 ~~~ad~vilV~D~~~~~~s~~~l~~------~l~~~~~~~~piilv~NK~DL~~~~~----v~~~~~~~~~~~~~~~~~~ 151 (301)
T 1u0l_A 82 VANVDQVILVVTVKMPETSTYIIDK------FLVLAEKNELETVMVINKMDLYDEDD----LRKVRELEEIYSGLYPIVK 151 (301)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHH------HHHHHHHTTCEEEEEECCGGGCCHHH----HHHHHHHHHHHTTTSCEEE
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHH------HHHHHHHCCCCEEEEEeHHHcCCchh----HHHHHHHHHHHhhhCcEEE
Confidence 45789999999998532 11121 12222233457789999999986532 233444444443213454
Q ss_pred EeecCCcChhhhhcCc
Q 025133 226 RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 ~s~~~~~~~~~l~~~~ 241 (257)
+|++++.++++++...
T Consensus 152 ~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 152 TSAKTGMGIEELKEYL 167 (301)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred EECCCCcCHHHHHHHh
Confidence 7999999999887654
No 425
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.24 E-value=0.0024 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++|.|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 426
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.24 E-value=0.0027 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999975
No 427
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.23 E-value=0.0011 Score=57.16 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++|+|||||+|.|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4899999999999999999984
No 428
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.20 E-value=0.0028 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 429
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.20 E-value=0.0026 Score=51.31 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.++|+|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 430
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.20 E-value=0.0025 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 431
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.20 E-value=0.0024 Score=56.51 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+++|+|++||||||+++.|+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999999864
No 432
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.19 E-value=0.013 Score=46.45 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=24.4
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEec
Q 025133 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILN 66 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~ 66 (257)
++|+|.++||||||...|... +.++.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~--~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD--APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS--CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc--CCCeEEEec
Confidence 789999999999999999865 555555554
No 433
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.18 E-value=0.00056 Score=57.75 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=27.2
Q ss_pred ccccccccCcccCCCc----ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 15 DETTHEFSNSHENDDV----SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~~----~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++.+.|+....+.+. ..+ +++.|++|+|||||++.|...
T Consensus 53 ~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 53 KEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 4555555554333222 222 899999999999999999864
No 434
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.17 E-value=0.0025 Score=54.66 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++.|++|||||||+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 3899999999999999999985
No 435
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.16 E-value=0.0033 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.163 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+..+++|+|++|||||||++.|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998653
No 436
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.16 E-value=0.0033 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...++|+|++||||||+.+.|.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 437
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.13 E-value=0.0032 Score=56.63 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=31.1
Q ss_pred EEEEccccccccCcccCCCcc-eeEEEEEecCCCcHHHHHHHHHc
Q 025133 11 AVRIDETTHEFSNSHENDDVS-VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+.++|+ +.|++...+. .. ..+++|+|++||||||+++++..
T Consensus 6 ~l~~~~~-~~~~~~~~~~-~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 6 GLELSNF-KSYRGVTKVG-FGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEEESC-SSCCSEEEEE-CTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCE-EEECCceeEE-ecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4677888 6776533222 32 45899999999999999999853
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.11 E-value=0.003 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
++++|+|++||||||+.+.|..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999975
No 439
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.09 E-value=0.0034 Score=48.02 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=26.9
Q ss_pred EEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHH
Q 025133 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
+.++|+. .|.+.. -....++.+|+|+.||||||++.+|.
T Consensus 6 l~i~nf~-~~~~~~--i~f~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 6 VTVKNFR-SHSDTV--VEFKEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEESBT-TBSSEE--EECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCcc-cCcceE--EEcCCCeEEEECCCCCCHHHHHHHHH
Confidence 4555553 333321 12445699999999999999999984
No 440
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.09 E-value=0.0053 Score=53.03 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=26.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
.++++|+||+|||||||...|....+ ..+|+.|
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~D 35 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGD 35 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc---cceeecC
Confidence 46899999999999999999987532 3556654
No 441
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.08 E-value=0.0044 Score=49.16 Aligned_cols=35 Identities=31% Similarity=0.309 Sum_probs=27.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
.+++++|++|+||||++-.++.+ ..++++.++...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 47899999999999998766543 347788777655
No 442
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.07 E-value=0.0063 Score=49.62 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=27.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--C------CCCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--K------HGKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~------~~~~v~ii~~~~ 68 (257)
+++|+|++|+|||||+..|+.. . .+..+..+..+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 8999999999999999999862 2 255677777664
No 443
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.06 E-value=0.0028 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+..+++++|++||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999764
No 444
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.06 E-value=0.0034 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.4
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.+-.+++|.|+.||||||+++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34458999999999999999999865
No 445
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.05 E-value=0.0015 Score=55.80 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=24.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~ 67 (257)
.++++|+|++||||||+.+.|... ..+.++.++..|
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 468999999999999999999753 123446666644
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.04 E-value=0.004 Score=49.82 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCcHHHHHHHHHc
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+...+++++|++||||||+.+.|.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999974
No 447
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.04 E-value=0.0072 Score=53.32 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=47.7
Q ss_pred eeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHH----HHHhCC-CCEEE-
Q 025133 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKE----IHEINS-LAHVI- 225 (257)
Q Consensus 152 ~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~----l~~~~~-~a~i~- 225 (257)
..+.+++|+|+......+.. .+...+. ..+.++|+||+|+.+.+.. .+.+.++ .++.+- ..+++
T Consensus 69 ~~~~il~VvD~~d~~~~~~~-----~l~~~~~--~~p~ilV~NK~DL~~~~~~---~~~~~~~l~~~~~~~g~~~~~v~~ 138 (368)
T 3h2y_A 69 SDALVVKIVDIFDFNGSWLP-----GLHRFVG--NNKVLLVGNKADLIPKSVK---HDKVKHWMRYSAKQLGLKPEDVFL 138 (368)
T ss_dssp SCCEEEEEEETTSHHHHCCT-----THHHHSS--SSCEEEEEECGGGSCTTSC---HHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred cCcEEEEEEECCCCcccHHH-----HHHHHhC--CCcEEEEEEChhcCCcccC---HHHHHHHHHHHHHHcCCCcccEEE
Confidence 34689999999875432111 0111111 4577899999999875431 2333333 333221 12444
Q ss_pred EeecCCcChhhhhcCc
Q 025133 226 RSVRCQVDLSEVLNCR 241 (257)
Q Consensus 226 ~s~~~~~~~~~l~~~~ 241 (257)
+|++++.++++++..+
T Consensus 139 iSA~~g~gi~~L~~~l 154 (368)
T 3h2y_A 139 ISAAKGQGIAELADAI 154 (368)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred EeCCCCcCHHHHHhhh
Confidence 7999999999888765
No 448
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.01 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
=+++.||||+|||++++++..+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 3899999999999999999864
No 449
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.01 E-value=0.0075 Score=55.42 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=29.0
Q ss_pred EccccccccCcccCCCcce--e-EEEEEecCCCcHHHHHHHHHcc
Q 025133 14 IDETTHEFSNSHENDDVSV--G-VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~--~-vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++...+.++..+.+.+. | =+++.|++|+|||||++.+...
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4455555555544443322 2 2899999999999999999864
No 450
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.01 E-value=0.0038 Score=52.91 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+..+++|+|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999973
No 451
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.97 E-value=0.0039 Score=50.82 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 452
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.97 E-value=0.0048 Score=53.87 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=25.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
++++|+|++|||||||...|.... ...+++.|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l---~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF---NGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT---TEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc---CCceeccc
Confidence 589999999999999999998643 24566655
No 453
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.96 E-value=0.0038 Score=50.57 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+++|.|+|||||+|....|.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 454
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.95 E-value=0.0041 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHc
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+..++++.|++||||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
No 455
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.95 E-value=0.0043 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 025133 34 VTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 456
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.94 E-value=0.0061 Score=48.50 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=24.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL 65 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~ 65 (257)
..+++.|++|+|||+|++.+... ..+.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56889999999999999999764 3344554443
No 457
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.93 E-value=0.0073 Score=49.13 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=28.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
..+++|.|++||||||+++.|.+. ..+.++ +...+|+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~~ 45 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPGG 45 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSCS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCC
Confidence 457899999999999999999764 345565 45556653
No 458
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.91 E-value=0.005 Score=55.25 Aligned_cols=26 Identities=42% Similarity=0.520 Sum_probs=22.2
Q ss_pred CcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 29 ~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.....+++++|++||||||+.+.|..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33455899999999999999999975
No 459
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.91 E-value=0.017 Score=48.71 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
.-+++.|++|+||||+++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 460
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.88 E-value=0.0037 Score=53.85 Aligned_cols=88 Identities=14% Similarity=0.265 Sum_probs=50.1
Q ss_pred cceeeeeEEEEEeccchHHHHhhhccCCChhHHHHHHhhcCEEEEeCCCCCCcCCCcchHHHHHHHHHHhCCCCEEEEee
Q 025133 149 SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 228 (257)
Q Consensus 149 ~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql~~~~vivlNK~D~~~~~~~~~~l~~~~~~l~~~~~~a~i~~s~ 228 (257)
...++|.++.|+|+.......+... .+.........+.++|+||+|+.++.+..+.++.+.+..+... ...+.+|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~---r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g-~~v~~~sa 158 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLD---RFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-YDVYLTSS 158 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHH---HHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-CCEEECCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHH---HHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-CeEEEEec
Confidence 4678999999999984332222110 0111122234567999999999976320001344444444433 22344677
Q ss_pred cCCcChhhhhcC
Q 025133 229 RCQVDLSEVLNC 240 (257)
Q Consensus 229 ~~~~~~~~l~~~ 240 (257)
..+.++++|+..
T Consensus 159 ~~~~g~~~L~~~ 170 (307)
T 1t9h_A 159 KDQDSLADIIPH 170 (307)
T ss_dssp HHHTTCTTTGGG
T ss_pred CCCCCHHHHHhh
Confidence 877787776654
No 461
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.86 E-value=0.019 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+-+++.|++|+|||++++.+..+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999764
No 462
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.85 E-value=0.0026 Score=58.83 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=29.8
Q ss_pred CCcEEEEccccccccCcccCCCcce---e---EEEEEecCCCcHHHHHHHH
Q 025133 8 PPLAVRIDETTHEFSNSHENDDVSV---G---VTVITGFLGAGKSTLVNYI 52 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~---vv~i~G~~gsGKSTli~~L 52 (257)
+..+++.+++.+...+...+++... + +++|.|++|||||||++.+
T Consensus 9 ~~~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 9 PNNNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp -----CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3445666667655555556554433 3 8999999999999999995
No 463
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.85 E-value=0.0055 Score=49.59 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=26.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEec
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN 66 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~ 66 (257)
.+.++|.|++|+||||+++.+... ..+.++..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 457899999999999999999764 22455555543
No 464
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.85 E-value=0.009 Score=52.07 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=25.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
++++|+||+|||||||...|.++. ..-+|+.|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~D 72 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF---PLEVINSD 72 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS---CEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC---CCcEEccc
Confidence 589999999999999999999743 33566655
No 465
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.82 E-value=0.0051 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.++++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999985
No 466
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.80 E-value=0.0059 Score=50.57 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=29.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
..+++|.|++||||||+++.|.+. ..+.++++...+|+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG 67 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence 358999999999999999999764 345564566667654
No 467
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.78 E-value=0.012 Score=52.25 Aligned_cols=40 Identities=25% Similarity=0.131 Sum_probs=22.2
Q ss_pred ceeEE-EEEecCCCcHHHHHHHHHcc--------CCCCeEEEEecCCCc
Q 025133 31 SVGVT-VITGFLGAGKSTLVNYILNG--------KHGKRIAVILNEFGE 70 (257)
Q Consensus 31 ~~~vv-~i~G~~gsGKSTli~~Ll~~--------~~~~~v~ii~~~~g~ 70 (257)
+..++ ++.|..|+||||+.-.|... ..|+++.++..|+..
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~ 158 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA 158 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 34455 55588999999998888542 358999999999753
No 468
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.77 E-value=0.0049 Score=54.31 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHH
Q 025133 31 SVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
..++++|+|++||||||+++++.
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34588999999999999999985
No 469
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.77 E-value=0.0048 Score=51.08 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=27.8
Q ss_pred EccccccccCcccCCCc----ceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 14 IDETTHEFSNSHENDDV----SVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~----~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
++++.+.|.....+.+. ... +++.|++|+|||||++.+...
T Consensus 28 l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 28 LKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 45555556554333222 122 899999999999999999864
No 470
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.76 E-value=0.0038 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999999753
No 471
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.75 E-value=0.0055 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
...++|.|++||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.75 E-value=0.0083 Score=51.68 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=26.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
.++++|+||+|||||||...|....+ .-+++.|
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP---VELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC---EEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC---CcEEecc
Confidence 46899999999999999999987432 3466654
No 473
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.016 Score=52.23 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHcc
Q 025133 35 TVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 35 v~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++.||||+|||++++++..+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 474
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.016 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
=+++.||||+|||++++++..+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
No 475
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.73 E-value=0.0065 Score=49.88 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=27.3
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEecCCC
Q 025133 31 SVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFG 69 (257)
Q Consensus 31 ~~~vv~i~G~~gsGKSTli~~Ll~~~~-~~~v~ii~~~~g 69 (257)
+..+++|.|++||||||+++.|.+... +..+ +...+++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~-~~~~~p~ 63 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDV-IMTREPG 63 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCE-EEECTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCc-eeecCCC
Confidence 345799999999999999999986411 4444 3445554
No 476
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.71 E-value=0.0055 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
...++++|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999753
No 477
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.71 E-value=0.0044 Score=50.86 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCcceeEEEEEecCCCcHHHHHHHHHcc--C-CCCeEEEEecCCCc
Q 025133 28 DDVSVGVTVITGFLGAGKSTLVNYILNG--K-HGKRIAVILNEFGE 70 (257)
Q Consensus 28 ~~~~~~vv~i~G~~gsGKSTli~~Ll~~--~-~~~~v~ii~~~~g~ 70 (257)
.+.+..+++|.|+.||||||+++.|.+. . .|.++..+..+||.
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 3445568999999999999999999764 2 45566665667764
No 478
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.013 Score=52.77 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
=+++.||||+|||++++++..+
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 479
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.69 E-value=0.007 Score=60.34 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=28.0
Q ss_pred EEEEcc-----ccccc-cCcccCCCcc------------eeEEEEEecCCCcHHHHHHHH
Q 025133 11 AVRIDE-----TTHEF-SNSHENDDVS------------VGVTVITGFLGAGKSTLVNYI 52 (257)
Q Consensus 11 ~~~~~~-----~~~~~-~~~~~~~~~~------------~~vv~i~G~~gsGKSTli~~L 52 (257)
.+++++ +.+.| ++..+..+.. -.+++|+||+|+|||||++.+
T Consensus 750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH
Confidence 588888 87777 4444443332 258999999999999999998
No 480
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.65 E-value=0.0063 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|.|++||||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 481
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.0049 Score=56.08 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=33.4
Q ss_pred EEEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHcc
Q 025133 11 AVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+++++|+.++|++-+ +.-..-++++|+|++|||||||++.|+..
T Consensus 118 mi~~~nl~~~y~~vs-l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 118 MKYIYNLHFMLEKIR-MSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHHHHHHHHHHHH-HHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred hhhhhhhhehhhcCc-eEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 467889998886311 11124568999999999999999999864
No 482
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=95.64 E-value=0.17 Score=43.55 Aligned_cols=150 Identities=16% Similarity=0.214 Sum_probs=75.9
Q ss_pred CcceeEEEEEe--cCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCC-----Cceeeeeeec---CCCc
Q 025133 29 DVSVGVTVITG--FLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEG-----GALVEEWVEL---ANGC 98 (257)
Q Consensus 29 ~~~~~vv~i~G--~~gsGKSTli~~Ll~~~~~~~v~ii~~~~g~~~~~d~~~~~~~~~-----~~~~~~~~~l---~~gc 98 (257)
+.++||+.|.- -=|+|||-++-.|.+.-+++++++++.-+|....-. ..+....+ ...-++-..+ ..+|
T Consensus 33 ~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~~~ilsRGYg~~~~~~-~~v~~~~~~~~~~~~~GDEp~lla~~~~~~ 111 (315)
T 4ehx_A 33 KLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSKGT-LIVSEYGNLKVSWEEAGDEPYLMAKLLPHV 111 (315)
T ss_dssp CCSSCEEEEEESBSSCCSHHHHHHHHHHHTTTSCEEEEECCCSCSSCSE-EEEEETTEECSCHHHHCHHHHHHHHHCTTS
T ss_pred cCCCCEEEECCEEeCCCChHHHHHHHHHHHhhcCceEEeecccccccCc-eEEeecccccCCcccccCHHHHHHHhCCCc
Confidence 45677776644 368999999999987655778999998877522100 00100000 0000000001 1122
Q ss_pred eeeccchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHhcccccccccceeeeeEEEEEeccchHHHHhhhccCCCh
Q 025133 99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (257)
Q Consensus 99 icc~~~~~~~~~l~~~~~~~~~~~~ilIDt~G~~~~~~~~~~~~~~~~~~~~~~~~~vi~vvDa~~~~~~~~~~~~~~~~ 178 (257)
..+--++... ....++ ...++|+|+.| -|+-+. . ..-|.-|.|+|...+ .+..-+...+
T Consensus 112 ~v~v~~~R~~-~~~~~~-~~~~~dviIlD-DGfQh~-----------~----l~rDl~Ivv~d~~~g---ng~lLPaGpL 170 (315)
T 4ehx_A 112 SVVASEDRYK-GGLLAL-EKLSPEVFILD-DGFQHR-----------K----LHRDLNILLLKKKDL---KDRLLPAGNL 170 (315)
T ss_dssp EEEEESSHHH-HHHHHH-HHHCCSEEEEE-TCTTCT-----------T----BCCSEEEEEEEHHHH---TCCBTTTSSB
T ss_pred eEEEecchHH-HHHHHh-hccCCcEEEec-Cccccc-----------c----ccccceEEEeeeecc---CCeecccccc
Confidence 2211122221 122222 24568888887 232211 1 223555677885432 1222222333
Q ss_pred hHHHHHHhhcCEEEEeCCCCCC
Q 025133 179 PEAIHQIAFADVVILNKVDLVS 200 (257)
Q Consensus 179 ~~~~~ql~~~~vivlNK~D~~~ 200 (257)
.+....++.+|++++|+.+...
T Consensus 171 REp~~~l~raD~iii~~~~~~~ 192 (315)
T 4ehx_A 171 REPLKEIRRADALVLTYQEVEP 192 (315)
T ss_dssp SSCGGGGGGCSEEEEECTTTSC
T ss_pred cCChhHhhhccEEEEecCCcch
Confidence 4555778999999999977543
No 483
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.63 E-value=0.011 Score=52.12 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=48.7
Q ss_pred eeeeEEEEEeccchHHHHhhhccCCChhHHHHHH-hhcCEEEEeCCCCCCcCCCcchHHHHHHH----HHHhCCC-CEE-
Q 025133 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFADVVILNKVDLVSPERSGDSLDELEKE----IHEINSL-AHV- 224 (257)
Q Consensus 152 ~~~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ql-~~~~vivlNK~D~~~~~~~~~~l~~~~~~----l~~~~~~-a~i- 224 (257)
..+.+++|+|+..+..... .+....+ ..+.++|+||+|+++.+.. .+.+.++ +++..-. ..+
T Consensus 71 ~~~lil~VvD~~d~~~s~~--------~~l~~~l~~~piilV~NK~DLl~~~~~---~~~~~~~l~~~~~~~g~~~~~v~ 139 (369)
T 3ec1_A 71 SKALVVNIVDIFDFNGSFI--------PGLPRFAADNPILLVGNKADLLPRSVK---YPKLLRWMRRMAEELGLCPVDVC 139 (369)
T ss_dssp HCCEEEEEEETTCSGGGCC--------SSHHHHCTTSCEEEEEECGGGSCTTCC---HHHHHHHHHHHHHTTTCCCSEEE
T ss_pred cCcEEEEEEECCCCCCchh--------hHHHHHhCCCCEEEEEEChhcCCCccC---HHHHHHHHHHHHHHcCCCcccEE
Confidence 4579999999987653211 1111112 4577889999999876431 2333333 3333221 244
Q ss_pred EEeecCCcChhhhhcCc
Q 025133 225 IRSVRCQVDLSEVLNCR 241 (257)
Q Consensus 225 ~~s~~~~~~~~~l~~~~ 241 (257)
.+|++++.++++++..+
T Consensus 140 ~iSA~~g~gi~~L~~~I 156 (369)
T 3ec1_A 140 LVSAAKGIGMAKVMEAI 156 (369)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 48999999999888765
No 484
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.63 E-value=0.0057 Score=52.80 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=28.6
Q ss_pred EEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHH
Q 025133 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
+.++|. +.|++...+ ....++.+|+|++||||||++.+|.
T Consensus 6 L~i~nf-r~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 6 LYLKGF-KSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEESB-TTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHH
T ss_pred EEEeCc-eeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHH
Confidence 566773 456442222 2344599999999999999999996
No 485
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.61 E-value=0.0056 Score=53.80 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
..++|+|++|||||||++.|...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999853
No 486
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.019 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
=+++.||||+|||++++++..+
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 4899999999999999999864
No 487
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.57 E-value=0.0073 Score=50.87 Aligned_cols=35 Identities=23% Similarity=0.127 Sum_probs=26.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc-CC-----------CCeEEEEecCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG-KH-----------GKRIAVILNEF 68 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~-~~-----------~~~v~ii~~~~ 68 (257)
+++|+|++|+|||||+..++.. .. +.+++++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 8999999999999999998742 12 34666766554
No 488
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.56 E-value=0.013 Score=47.21 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=24.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
..++|+|++|+|||||...|..+ +. .+++.|
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~--g~--~iIsdD 65 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR--GH--RLIADD 65 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT--TC--EEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHh--CC--eEEecc
Confidence 46899999999999999999864 22 455554
No 489
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.56 E-value=0.0088 Score=51.82 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=24.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEecC
Q 025133 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~~~~~~v~ii~~~ 67 (257)
++++|+|++||||||+...|.... ...+++.|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l---~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL---PCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCcEEecc
Confidence 489999999999999999998642 23455543
No 490
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.49 E-value=0.024 Score=49.02 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=28.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--C--CCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--K--HGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~--~~~~v~ii~~~~g 69 (257)
++.|.|++|+|||||+-.++.+ . .+.+++.+..+-.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 7899999999999998887653 2 3678888887644
No 491
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.48 E-value=0.014 Score=50.33 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=30.4
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 025133 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g 69 (257)
+++|+|+||+|||||+..++.. .++.++++++.+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 8999999999999999998743 45688999998854
No 492
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.47 E-value=0.0077 Score=48.46 Aligned_cols=24 Identities=42% Similarity=0.690 Sum_probs=21.2
Q ss_pred cceeEEEEEecCCCcHHHHHHHHH
Q 025133 30 VSVGVTVITGFLGAGKSTLVNYIL 53 (257)
Q Consensus 30 ~~~~vv~i~G~~gsGKSTli~~Ll 53 (257)
+..++.+|+|+.||||||++.+|.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHH
Confidence 445799999999999999999984
No 493
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.46 E-value=0.0056 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.||||+||||++.+|++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 494
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.42 E-value=0.0099 Score=48.34 Aligned_cols=38 Identities=37% Similarity=0.445 Sum_probs=28.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~~~g~ 70 (257)
.+++|.|+.||||||.++.|... ..+.+..+...+||.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence 57899999999999999999764 335423466677764
No 495
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.41 E-value=0.037 Score=47.53 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 025133 33 GVTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
+.++++|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999999764
No 496
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.40 E-value=0.00064 Score=56.10 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=30.4
Q ss_pred cEEEEccccccccCcccCCCcceeEEEEEecCCCcHHHHHHHHHc
Q 025133 10 LAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
..+.++++...++. . -.+...+++|+|++|||||||++.|..
T Consensus 8 ~~l~l~~~~~~~~~-~--~~~~~~~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 8 RSLTLINWNGFFAR-T--FDLDELVTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp EEEEEEEETTEEEE-E--ECHHHHHHHHHSCCSHHHHHHHHHHHH
T ss_pred eEEEEEeeecccCC-E--EEEcCcEEEEECCCCCCHHHHHHHHhc
Confidence 35777888766544 1 122225789999999999999999974
No 497
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.39 E-value=0.0091 Score=56.56 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=28.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEec
Q 025133 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN 66 (257)
Q Consensus 32 ~~vv~i~G~~gsGKSTli~~Ll~~--~~~~~v~ii~~ 66 (257)
-|+.+|.||||+|||+++-.++.+ .++.++.+++.
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 468999999999999988887653 45778877774
No 498
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.36 E-value=0.0084 Score=48.14 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
+.++|.|++|+||||+++.+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999975
No 499
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.34 E-value=0.0084 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 025133 34 VTVITGFLGAGKSTLVNYILNG 55 (257)
Q Consensus 34 vv~i~G~~gsGKSTli~~Ll~~ 55 (257)
-+++.|++|+||||+++.+...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3889999999999999999764
No 500
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.33 E-value=0.0086 Score=54.76 Aligned_cols=22 Identities=41% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 025133 33 GVTVITGFLGAGKSTLVNYILN 54 (257)
Q Consensus 33 ~vv~i~G~~gsGKSTli~~Ll~ 54 (257)
.+++|+|++|||||||++.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999964
Done!