BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025134
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S3S|G Chain G, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|H Chain H, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|I Chain I, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 127
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%)
Query: 133 EPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLAD 192
+P+ F G G+ LGS++ + + + +S ++++E P+T++QIRLAD
Sbjct: 2 KPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLAD 61
Query: 193 GTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSV 252
G RL+ FN H ISDI FI +RP A + M FP K LAD QT+++A L N+V
Sbjct: 62 GGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV 121
Query: 253 VIQKF 257
++Q+
Sbjct: 122 IVQRL 126
>pdb|1I42|A Chain A, Nmr Structure Of The Ubx Domain From P47
pdb|1JRU|A Chain A, Nmr Structure Of The Ubx Domain From P47 (Energy Minimised
Average)
Length = 89
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%)
Query: 171 SSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMG 230
+S ++++E P+T++QIRLADG RL+ FN H ISDI FI +RP A + M
Sbjct: 2 ASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTT 61
Query: 231 FPPKVLADRTQTIEQAGLANSVVIQKF 257
FP K LAD QT+++A L N+V++Q+
Sbjct: 62 FPNKELADENQTLKEANLLNAVIVQRL 88
>pdb|1SS6|A Chain A, Solution Structure Of Sep Domain From Human P47
Length = 102
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 70 VHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRR 127
VH ++ W +GF++++G LR DP NA FLESI++ E P EL V++++ R
Sbjct: 12 VHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHR 71
Query: 128 DVKCPEPEKHHVPFQGVGRTLGSSS 152
D +P+ F G G+ LGS++
Sbjct: 72 DEDFVKPKGAFKAFTGEGQKLGSTA 96
>pdb|1VAZ|A Chain A, Solution Structures Of The P47 Sep Domain
Length = 88
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 70 VHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKEL 111
VH ++ W GF++++G LR DP NA FLESI++ E P EL
Sbjct: 22 VHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAEL 64
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 71 HNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEP 113
+ + W + P +++ PE +F+E K+ ECP E P
Sbjct: 525 YGVTMW-EALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPP 566
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 76 WANGFTVNDG------PLRRLDDPENASFLESIKKSECPKELEP 113
W+ G T+ + P +++ PE +F+E K+ ECP E P
Sbjct: 197 WSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPP 240
>pdb|2OFP|A Chain A, Crystal Structure Of Escherichia Coli Ketopantoate
Reductase In A Ternary Complex With Nadp+ And Pantoate
pdb|2OFP|B Chain B, Crystal Structure Of Escherichia Coli Ketopantoate
Reductase In A Ternary Complex With Nadp+ And Pantoate
Length = 320
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 55 SGETVPSAPQQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKE 110
+ E + S Q + H + + NGF + + PEN E +K+ E E
Sbjct: 255 TAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESEYE 310
>pdb|1YJQ|A Chain A, Crystal Structure Of Ketopantoate Reductase In Complex
With Nadp+
pdb|1YON|A Chain A, Escherichia Coli Ketopantoate Reductase In Complex With 2-
Monophosphoadenosine-5'-Diphosphate
Length = 303
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 55 SGETVPSAPQQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKE 110
+ E + S Q + H + + NGF + + PEN E +K+ E E
Sbjct: 238 TAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESEYE 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,774,529
Number of Sequences: 62578
Number of extensions: 305022
Number of successful extensions: 488
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 11
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)