Query 025134
Match_columns 257
No_of_seqs 205 out of 801
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:23:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ss6_A P47, NSFL1 cofactor P47 100.0 1.9E-37 6.4E-42 242.0 9.5 92 65-156 8-100 (102)
2 1s3s_G P47 protein; AAA ATPase 100.0 1.3E-33 4.3E-38 228.8 5.9 124 133-257 2-126 (127)
3 1vaz_A NSFL1 cofactor P47; bet 100.0 9.6E-30 3.3E-34 192.7 6.1 70 65-134 18-88 (88)
4 2dzk_A UBX domain-containing p 99.8 4E-20 1.4E-24 145.7 10.9 78 179-257 9-89 (109)
5 3qx1_A FAS-associated factor 1 99.8 1.3E-19 4.6E-24 136.0 10.0 75 179-255 3-80 (84)
6 1wj4_A KIAA0794 protein; UBX d 99.8 4.4E-19 1.5E-23 142.8 13.2 83 173-257 33-119 (124)
7 2cr5_A Reproduction 8; UBX dom 99.8 1.9E-18 6.6E-23 135.9 8.8 72 181-254 21-94 (109)
8 2kzr_A Ubiquitin thioesterase 98.9 2.7E-09 9.3E-14 79.5 5.7 70 185-255 2-74 (86)
9 2pjh_A Protein NPL4, nuclear p 97.7 3.3E-05 1.1E-09 56.9 4.0 68 184-253 5-75 (80)
10 2dzi_A Ubiquitin-like protein 97.5 0.00086 3E-08 47.9 9.1 68 182-253 6-74 (81)
11 1wju_A NEDD8 ultimate buster-1 97.4 0.00081 2.8E-08 51.7 9.2 70 181-254 13-87 (100)
12 3mtn_B UBA80, ubcep1, ubiquiti 97.4 0.00086 2.9E-08 48.2 8.9 68 183-254 3-71 (85)
13 3a9j_A Ubiquitin; protein comp 97.4 0.00064 2.2E-08 47.7 7.8 65 185-253 2-67 (76)
14 1ndd_A NEDD8, protein (ubiquit 97.4 0.00084 2.9E-08 47.1 8.1 65 185-253 2-67 (76)
15 1wia_A Hypothetical ubiquitin- 97.3 0.00094 3.2E-08 49.7 8.4 68 181-254 5-73 (95)
16 1wh3_A 59 kDa 2'-5'-oligoadeny 97.2 0.0028 9.5E-08 46.0 9.8 68 182-253 6-74 (87)
17 1yx5_B Ubiquitin; proteasome, 97.2 0.0015 5.2E-08 48.9 8.5 65 185-253 2-67 (98)
18 3dbh_I NEDD8; cell cycle, acti 97.2 0.002 7E-08 46.7 9.0 70 181-254 10-80 (88)
19 3v6c_B Ubiquitin; structural g 97.2 0.0026 8.9E-08 46.9 9.6 71 180-254 14-85 (91)
20 3phx_B Ubiquitin-like protein 97.2 0.0021 7.1E-08 45.9 8.6 68 182-253 3-71 (79)
21 3n3k_B Ubiquitin; hydrolase, p 97.1 0.0014 4.8E-08 47.2 6.9 68 183-254 3-71 (85)
22 2kan_A Uncharacterized protein 97.1 0.0044 1.5E-07 46.4 9.8 70 180-253 12-82 (94)
23 1wy8_A NP95-like ring finger p 97.1 0.0056 1.9E-07 44.6 10.0 68 182-253 6-76 (89)
24 4dwf_A HLA-B-associated transc 97.1 0.0036 1.2E-07 45.8 8.9 69 182-254 4-72 (90)
25 2bwf_A Ubiquitin-like protein 97.0 0.0029 1E-07 44.6 7.7 66 184-254 5-71 (77)
26 2wyq_A HHR23A, UV excision rep 97.0 0.005 1.7E-07 44.3 9.1 68 183-254 5-76 (85)
27 4hcn_B Polyubiquitin, ubiquiti 97.0 0.0036 1.2E-07 47.0 8.4 69 182-254 21-90 (98)
28 2hj8_A Interferon-induced 17 k 97.0 0.0038 1.3E-07 45.8 8.3 67 183-253 4-71 (88)
29 2uyz_B Small ubiquitin-related 97.0 0.0038 1.3E-07 44.5 8.0 67 183-253 3-70 (79)
30 3k9o_B Ubiquitin, UBB+1; E2-25 96.9 0.0032 1.1E-07 46.6 7.9 67 184-254 2-69 (96)
31 4fbj_B NEDD8; effector-HOST ta 96.9 0.0039 1.3E-07 45.8 8.1 66 185-254 2-68 (88)
32 1uel_A HHR23B, UV excision rep 96.9 0.0065 2.2E-07 45.2 9.2 65 185-253 2-70 (95)
33 4eew_A Large proline-rich prot 96.9 0.0059 2E-07 44.4 8.7 70 181-254 15-84 (88)
34 1wx8_A Riken cDNA 4931431F19; 96.9 0.0064 2.2E-07 45.1 8.9 68 181-253 15-83 (96)
35 1v5o_A 1700011N24RIK protein; 96.9 0.0077 2.6E-07 45.5 9.5 69 183-254 7-80 (102)
36 1v2y_A 3300001G02RIK protein; 96.9 0.0025 8.4E-08 49.3 6.7 68 183-253 7-90 (105)
37 1j8c_A Ubiquitin-like protein 96.8 0.021 7.2E-07 45.0 12.3 67 182-253 31-98 (125)
38 2ojr_A Ubiquitin; lanthide-bin 96.8 0.0054 1.8E-07 47.1 8.6 68 182-253 34-102 (111)
39 2faz_A Ubiquitin-like containi 96.8 0.0047 1.6E-07 43.8 7.6 67 183-253 2-71 (78)
40 1ttn_A DC-UBP, dendritic cell- 96.8 0.0078 2.7E-07 45.8 9.2 69 182-254 22-91 (106)
41 3plu_A Ubiquitin-like modifier 96.8 0.0048 1.7E-07 46.7 7.8 72 178-253 16-88 (93)
42 1sif_A Ubiquitin; hydrophobic 96.8 0.0043 1.5E-07 45.6 7.4 66 184-253 10-76 (88)
43 1wx7_A Ubiquilin 3; ubiquitin- 96.7 0.013 4.5E-07 44.4 10.0 67 182-253 16-83 (106)
44 1wxv_A BAG-family molecular ch 96.7 0.019 6.6E-07 42.2 10.3 69 182-254 6-80 (92)
45 2kk8_A Uncharacterized protein 96.7 0.0068 2.3E-07 44.4 7.6 67 183-253 10-78 (84)
46 1wyw_B Ubiquitin-like protein 96.7 0.0071 2.4E-07 45.3 7.9 68 182-253 20-88 (97)
47 2kc2_A Talin-1, F1; FERM, adhe 96.6 0.0061 2.1E-07 48.8 7.7 72 184-256 12-120 (128)
48 3m62_B UV excision repair prot 96.6 0.007 2.4E-07 46.2 7.4 67 184-254 2-69 (106)
49 1yqb_A Ubiquilin 3; structural 96.6 0.012 4.1E-07 44.5 8.6 68 181-253 20-88 (100)
50 3vdz_A Ubiquitin-40S ribosomal 96.5 0.0094 3.2E-07 45.8 8.0 67 183-253 35-102 (111)
51 1uh6_A Ubiquitin-like 5; beta- 96.5 0.012 4E-07 45.1 8.4 70 180-253 25-95 (100)
52 2klc_A Ubiquilin-1; ubiquitin- 96.5 0.013 4.6E-07 44.2 8.5 67 182-253 24-91 (101)
53 1wgh_A Ubiquitin-like 3, HCG-1 96.5 0.032 1.1E-06 43.7 10.6 65 181-249 14-86 (116)
54 1we6_A Splicing factor, putati 96.4 0.018 6.3E-07 44.0 8.9 69 182-254 26-99 (111)
55 3u30_A Ubiquitin, linear DI-ub 96.4 0.012 4.1E-07 48.3 8.4 70 180-253 17-87 (172)
56 1wgd_A Homocysteine-responsive 96.4 0.028 9.6E-07 41.4 9.7 68 182-253 6-80 (93)
57 2l7r_A Ubiquitin-like protein 96.3 0.016 5.5E-07 43.0 7.7 65 183-253 19-84 (93)
58 1we7_A SF3A1 protein; structur 96.3 0.023 7.8E-07 43.8 8.7 69 181-253 23-102 (115)
59 1v86_A DNA segment, CHR 7, way 96.2 0.015 5.1E-07 43.4 7.4 68 181-254 15-83 (95)
60 2kdi_A Ubiquitin, vacuolar pro 96.2 0.016 5.6E-07 44.8 7.7 67 183-253 9-76 (114)
61 4a20_A Ubiquitin-like protein 96.2 0.029 1E-06 42.5 8.7 70 181-254 17-91 (98)
62 1v5t_A 8430435I17RIK protein; 96.2 0.023 8E-07 41.8 8.0 70 182-254 6-78 (90)
63 1wgg_A Ubiquitin carboxyl-term 96.1 0.018 6E-07 43.2 7.1 67 182-254 6-74 (96)
64 2kdb_A Homocysteine-responsive 96.1 0.034 1.2E-06 42.2 8.6 69 180-252 20-94 (99)
65 1x1m_A Ubiquitin-like protein 96.1 0.036 1.2E-06 42.2 8.8 68 182-253 11-94 (107)
66 2gow_A HCG-1 protein, ubiquiti 96.0 0.034 1.2E-06 44.0 8.8 64 182-249 16-87 (125)
67 1wjn_A Tubulin-folding protein 96.0 0.038 1.3E-06 41.2 8.5 74 182-255 8-89 (97)
68 3b08_A Polyubiquitin-C, ubiqui 96.0 0.025 8.5E-07 44.7 7.8 65 185-253 2-67 (152)
69 1se9_A Ubiquitin family; ubiqu 95.9 0.033 1.1E-06 44.3 8.4 65 182-250 15-87 (126)
70 3rt3_B Ubiquitin-like protein 95.9 0.027 9.2E-07 45.3 8.0 67 184-253 3-71 (159)
71 2lxa_A Ubiquitin-like protein 95.9 0.026 8.7E-07 41.8 7.1 67 184-255 2-74 (87)
72 2kjr_A CG11242; UBL, ubiquitin 95.8 0.053 1.8E-06 40.7 8.7 72 181-253 13-90 (95)
73 3q3f_A Ribonuclease/ubiquitin 95.8 0.034 1.2E-06 47.1 8.3 68 183-254 105-173 (189)
74 2kd0_A LRR repeats and ubiquit 95.8 0.035 1.2E-06 40.5 7.4 67 183-254 12-79 (85)
75 1wf9_A NPL4 family protein; be 95.7 0.027 9.3E-07 43.0 6.9 70 184-254 8-90 (107)
76 3b1l_X E3 ubiquitin-protein li 94.7 0.0017 5.9E-08 45.8 0.0 65 185-253 2-67 (76)
77 3b08_A Polyubiquitin-C, ubiqui 95.6 0.04 1.4E-06 43.4 7.7 69 182-254 75-144 (152)
78 2dzj_A Synaptic glycoprotein S 95.6 0.041 1.4E-06 40.7 7.1 71 184-256 11-86 (88)
79 3rt3_B Ubiquitin-like protein 95.5 0.061 2.1E-06 43.2 8.6 68 182-253 80-148 (159)
80 2daf_A FLJ35834 protein; hypot 95.4 0.11 3.6E-06 41.0 9.3 70 180-253 12-82 (118)
81 3l0w_B Monoubiquitinated proli 95.4 0.063 2.2E-06 44.3 8.4 65 185-253 2-67 (169)
82 3m63_B Ubiquitin domain-contai 95.3 0.019 6.6E-07 43.4 4.8 66 184-254 29-95 (101)
83 3u30_A Ubiquitin, linear DI-ub 94.6 0.13 4.4E-06 42.0 8.1 69 182-254 95-164 (172)
84 3ai5_A Yeast enhanced green fl 94.5 0.13 4.5E-06 46.7 8.6 70 180-253 230-300 (307)
85 2dzm_A FAS-associated factor 1 94.0 0.3 1E-05 37.0 8.5 67 184-254 10-77 (100)
86 1oqy_A HHR23A, UV excision rep 93.9 0.12 4.2E-06 48.0 7.2 68 182-253 6-77 (368)
87 3u5e_m 60S ribosomal protein L 93.6 0.012 4.3E-07 46.2 0.0 65 185-253 2-67 (128)
88 2al3_A TUG long isoform; TUG U 93.5 0.3 1E-05 36.6 7.5 65 185-253 11-76 (90)
89 2kj6_A Tubulin folding cofacto 93.4 0.64 2.2E-05 34.8 9.3 74 180-253 11-90 (97)
90 2io0_B Small ubiquitin-related 93.2 0.54 1.8E-05 34.9 8.6 65 182-250 4-68 (91)
91 1wm3_A Ubiquitin-like protein 93.1 0.48 1.6E-05 33.2 7.7 66 184-253 2-68 (72)
92 3u5c_f 40S ribosomal protein S 93.0 0.018 6.2E-07 47.1 0.0 65 185-253 2-67 (152)
93 2io1_B Small ubiquitin-related 92.8 0.38 1.3E-05 35.9 7.2 65 182-250 6-70 (94)
94 1v6e_A Cytoskeleton-associated 92.5 0.52 1.8E-05 34.7 7.7 70 184-254 8-83 (95)
95 3a4r_A Nfatc2-interacting prot 92.5 1.1 3.6E-05 32.1 9.0 65 182-250 6-71 (79)
96 2d07_B Ubiquitin-like protein 92.4 0.65 2.2E-05 34.4 8.1 65 182-250 16-80 (93)
97 1wz0_A Ubiquitin-like protein 92.3 0.73 2.5E-05 35.1 8.4 65 182-250 23-87 (104)
98 2daj_A KIAA0977 protein, COBL- 92.3 0.64 2.2E-05 34.6 7.6 69 181-250 8-76 (91)
99 2k8h_A Small ubiquitin protein 91.5 1 3.5E-05 34.6 8.5 65 182-250 25-89 (110)
100 2fnj_B Transcription elongatio 90.9 0.58 2E-05 36.6 6.5 60 186-249 3-63 (118)
101 2eke_C Ubiquitin-like protein 89.9 2 6.9E-05 32.8 8.7 64 182-250 30-93 (106)
102 3shq_A UBLCP1; phosphatase, hy 89.0 0.68 2.3E-05 42.0 6.4 70 182-254 4-75 (320)
103 1t0y_A Tubulin folding cofacto 88.8 1.7 5.9E-05 33.5 7.8 72 183-254 6-82 (122)
104 3kyd_D Small ubiquitin-related 87.4 2.4 8.1E-05 33.0 7.7 66 181-250 38-103 (115)
105 4b6w_A Tubulin-specific chaper 85.2 1.8 6.2E-05 31.5 5.7 69 184-253 3-78 (86)
106 4dbg_A Ranbp-type and C3HC4-ty 84.9 2.7 9.1E-05 32.1 6.7 64 182-249 21-88 (105)
107 2jxx_A Nfatc2-interacting prot 82.4 13 0.00043 27.8 9.5 68 180-251 22-90 (97)
108 4ajy_B Transcription elongatio 81.2 2.6 9E-05 32.9 5.4 59 188-250 5-64 (118)
109 2xzm_9 RPS31E; ribosome, trans 77.0 0.49 1.7E-05 40.0 0.0 56 185-244 2-57 (189)
110 3pge_A SUMO-modified prolifera 76.6 9.8 0.00034 32.2 8.0 65 181-250 27-91 (200)
111 3jyu_A Ubiquitin carboxyl-term 76.0 9.4 0.00032 32.6 7.9 59 196-254 154-216 (231)
112 3tix_A Ubiquitin-like protein 74.7 9.9 0.00034 32.4 7.4 64 182-250 56-119 (207)
113 4a3p_A Ubiquitin carboxyl-term 69.8 8.7 0.0003 32.5 6.2 59 196-254 142-204 (217)
114 3ivf_A Talin-1; FERM domain, c 63.6 17 0.00057 32.8 7.1 68 184-253 4-79 (371)
115 3ivf_A Talin-1; FERM domain, c 62.6 20 0.00069 32.2 7.5 67 181-248 83-156 (371)
116 2bps_A YUKD protein; ubiquitin 56.6 39 0.0013 24.3 6.7 69 185-255 6-79 (81)
117 3qij_A Protein 4.1; cytoskelet 55.7 14 0.00048 32.4 5.0 64 182-246 16-82 (296)
118 4dxa_B KREV interaction trappe 50.0 14 0.00047 32.8 4.0 52 180-233 2-55 (322)
119 1wgr_A Growth factor receptor- 47.5 47 0.0016 24.9 6.1 60 184-244 10-74 (100)
120 4atu_I Neuronal migration prot 39.9 15 0.00053 33.9 2.7 47 67-118 62-122 (373)
121 3pvl_A Myosin VIIA isoform 1; 38.8 57 0.002 32.1 6.8 47 182-228 262-309 (655)
122 3au4_A Myosin-X; protein-prote 37.3 44 0.0015 31.8 5.6 47 182-228 215-263 (555)
123 1h4r_A Merlin; FERM, neurofibr 35.1 43 0.0015 29.2 4.9 63 182-247 21-86 (314)
124 1ef1_A Moesin; membrane, FERM 33.4 45 0.0016 28.6 4.6 63 184-248 2-67 (294)
125 2v1y_A Phosphatidylinositol-4, 27.7 2E+02 0.0068 21.7 7.7 72 181-252 17-98 (108)
126 2al6_A Focal adhesion kinase 1 26.0 45 0.0015 30.1 3.4 45 184-228 8-57 (375)
127 2dnf_A Doublecortin domain-con 24.8 49 0.0017 24.9 2.9 41 68-108 12-56 (108)
128 1wxm_A A-RAF proto-oncogene se 22.5 1.6E+02 0.0053 21.5 5.1 39 179-217 3-41 (86)
129 3onh_A Ubiquitin-activating en 22.1 1.5E+02 0.0052 23.2 5.2 57 195-253 7-73 (127)
130 2kmm_A Guanosine-3',5'-BIS(dip 21.9 1.1E+02 0.0038 20.2 4.1 27 185-213 2-28 (73)
131 1wgk_A Riken cDNA 2900073H19 p 21.7 1.7E+02 0.0058 22.0 5.4 37 182-218 10-57 (114)
132 2c7h_A RBBP6, retinoblastoma-b 20.9 2.5E+02 0.0084 20.4 6.5 70 183-256 6-79 (86)
No 1
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=100.00 E-value=1.9e-37 Score=242.04 Aligned_cols=92 Identities=32% Similarity=0.612 Sum_probs=86.4
Q ss_pred CCCCceEEEEEeccceeecCCCCccCCChhhHHHHHHHhcCCCCCcccCCCCCCceEEEEec-ccccCCCCCCCCccccc
Q 025134 65 QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIR-RDVKCPEPEKHHVPFQG 143 (257)
Q Consensus 65 ~~~~~~~~l~lw~nGF~VddGp~R~y~dP~n~~FL~~I~~G~~P~EL~~~~~~~~V~v~l~~-r~e~y~~p~~~~~~F~G 143 (257)
.++.+.|+||||+|||+|||||||+|+||+|++||++|++|+||.||+.++++++|+|+|++ ++|+|++|++++++|+|
T Consensus 8 ~~~~~~~~ltlw~nGFtVdDGplR~ydDP~N~~FL~~I~~G~~P~EL~~~~~~~~V~v~v~d~~~e~y~~p~~~~~~F~G 87 (102)
T 1ss6_A 8 SSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTG 87 (102)
T ss_dssp CCSCEEEEEEEESSEEEETTSCEEETTCTTTHHHHHHHHHTCCCHHHHTTSCSSCEEEEEEEEETTCCCSSSSSSTTSCS
T ss_pred CCCCceEEEEEecCceEecCCCcccCCCHhHHHHHHHHHhCCCCHHHhcccCCCeEEEEeeeccCccccCCCCcccCCcc
Confidence 34678999999999999999999999999999999999999999999999999999999995 59999999888999999
Q ss_pred cccccccCCCCCC
Q 025134 144 VGRTLGSSSTAAS 156 (257)
Q Consensus 144 ~G~~LGs~~p~~~ 156 (257)
+||+||+++|...
T Consensus 88 ~G~~LGs~~p~~~ 100 (102)
T 1ss6_A 88 EGQKLGSTAPQVL 100 (102)
T ss_dssp SSSSGGGCCSSSS
T ss_pred cCeECCCCCCCCc
Confidence 9999999988764
No 2
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.98 E-value=1.3e-33 Score=228.83 Aligned_cols=124 Identities=37% Similarity=0.637 Sum_probs=95.6
Q ss_pred CCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHH
Q 025134 133 EPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSF 212 (257)
Q Consensus 133 ~p~~~~~~F~G~G~~LGs~~p~~~~~~~~~~~~~~~~~~~~~~~vd~s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~f 212 (257)
+||+++++|+|+||+|||++|...+.++++..+.+++.+...+.+|+++++|+|||||+||+|++.+|+.+|||+|||+|
T Consensus 2 ~p~~~~~~F~G~G~~Lgs~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~f 81 (127)
T 1s3s_G 2 KPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLF 81 (127)
T ss_dssp --------CCSCCCCCCSSCCCCCCCSCTTHHHHHHHHHHHHSCCCTTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHH
T ss_pred CCCCCCCCceecCeECCCCCCCCCCCCCCccccccccccCCCccccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHH
Confidence 46667899999999999998876422111110111111223477899999999999999999999999999999999999
Q ss_pred HHhhCCCC-CcCeEEEecCCCCcccCCccCcHhhhCCCCeeEEeeC
Q 025134 213 IDASRPGT-ARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQKF 257 (257)
Q Consensus 213 i~~~~p~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL~navivqk~ 257 (257)
|..++++. ..+|.|++ +||+|.|+|+++||+||||.|++|||||
T Consensus 82 V~~~~~~~~~~~f~L~t-~fPrk~l~d~~~TL~eagL~psavl~k~ 126 (127)
T 1s3s_G 82 IVDARPAMAATSFVLMT-TFPNKELADENQTLKEANLLNAVIVQRL 126 (127)
T ss_dssp HHHHCSGGGTSCEEEEE-TTTTEECCSTTCBHHHHTCSSCEEEEEE
T ss_pred HHHhCcCCCCCCeEEec-CCCCCCCCCCCCcHHHCCCcCceEEEEe
Confidence 99987754 67899999 9999999998999999999999999998
No 3
>1vaz_A NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-beta, novel fold, lipid binding protein; NMR {Rattus norvegicus} SCOP: d.245.1.1
Probab=99.96 E-value=9.6e-30 Score=192.70 Aligned_cols=70 Identities=33% Similarity=0.644 Sum_probs=65.5
Q ss_pred CCCCceEEEEEeccceeecCCCCccCCChhhHHHHHHHhcCCCCCcccCCCCCCceEEEEec-ccccCCCC
Q 025134 65 QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIR-RDVKCPEP 134 (257)
Q Consensus 65 ~~~~~~~~l~lw~nGF~VddGp~R~y~dP~n~~FL~~I~~G~~P~EL~~~~~~~~V~v~l~~-r~e~y~~p 134 (257)
.++++.++||||+|||+|||||||+|+||+|++||++|++|+||.||++++++++|+|+|++ ++|+|++|
T Consensus 18 ~~~~v~~~LtlW~nGFtVdDGpLR~ydDP~N~~FL~~I~~G~~P~EL~~~~~~~~V~v~l~d~r~E~Y~~P 88 (88)
T 1vaz_A 18 SGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKP 88 (88)
T ss_dssp CSSCCEEEEEEETTEEECTTSCEEETTSSTHHHHHHHHHHTCCSSHHHHTTSSSCCEEEEEECTTTSSCCC
T ss_pred CCCCceEEEEEecCceEecCCCCcCCCCHhHHHHHHHHHcCCCCHHHHcccCCCceEEEeEECCCCccCCc
Confidence 34668999999999999999999999999999999999999999999999999999999995 59999875
No 4
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.82 E-value=4e-20 Score=145.69 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=69.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccC--CccCcHhhhCCCC-eeEEe
Q 025134 179 ENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLA--DRTQTIEQAGLAN-SVVIQ 255 (257)
Q Consensus 179 ~s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~--d~s~TL~eagL~n-avivq 255 (257)
...++|+||||||||+|++.+|+.+|||++||+||..+......+|.|++ +||+|.|+ |.++||+||||.| ++|++
T Consensus 9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t-~fPrk~l~~~d~~~TL~elgL~psa~L~v 87 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLAT-MFPRREFTREDYKRRLLDLELAPSASVVL 87 (109)
T ss_dssp CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEEC-SSSCCBCCTTTTTSBTGGGTCSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEc-CCCCcCCcccccCCCHHHCCCCCceEEEE
Confidence 35678999999999999999999999999999999987533357899999 99999998 6789999999998 77777
Q ss_pred eC
Q 025134 256 KF 257 (257)
Q Consensus 256 k~ 257 (257)
+|
T Consensus 88 ~~ 89 (109)
T 2dzk_A 88 LP 89 (109)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 5
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.80 E-value=1.3e-19 Score=135.98 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=66.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccC--CccCcHhhhCCCC-eeEEe
Q 025134 179 ENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLA--DRTQTIEQAGLAN-SVVIQ 255 (257)
Q Consensus 179 ~s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~--d~s~TL~eagL~n-avivq 255 (257)
+++|+|+||||||||+|++.+|+.+|||++||+||.... ....+|.|++ +||+|.|+ |.++||+||||.| ++|+.
T Consensus 3 ~~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~-~~~~~f~L~t-~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 3 HMEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG-FPWDEYKLLS-TFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp -CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTT-CCTTTEEEEC-SSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcC-CCCCCeEEEe-CCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 368999999999999999999999999999999999853 3468999999 99999997 7789999999997 55543
No 6
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.80 E-value=4.4e-19 Score=142.81 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=72.6
Q ss_pred CCcccCCCCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCccc--CCccCcHhhhCCCC
Q 025134 173 EGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVL--ADRTQTIEQAGLAN 250 (257)
Q Consensus 173 ~~~~vd~s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l--~d~s~TL~eagL~n 250 (257)
..+.+|++.++|+||||||||+|++++|+.+|||++||+||... .....+|.|++ +||+|.| +|.++||+||||.|
T Consensus 33 ~~~~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t-~fPrk~l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 33 VVEGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLT-NFPRRKLSHLDYDITLQEAGLCP 110 (124)
T ss_dssp CCCCCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEEC-SSSCCEETSSCSSSCTTTTTCCS
T ss_pred cccccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEec-CCCCcCCccCCCCCCHHHCCCCC
Confidence 34678999999999999999999999999999999999999886 22357899999 9999999 57799999999998
Q ss_pred --eeEEeeC
Q 025134 251 --SVVIQKF 257 (257)
Q Consensus 251 --avivqk~ 257 (257)
+++||++
T Consensus 111 sa~Liv~~~ 119 (124)
T 1wj4_A 111 QETVFVQES 119 (124)
T ss_dssp SBCCEEEEC
T ss_pred ceEEEEEEc
Confidence 6666653
No 7
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.75 E-value=1.9e-18 Score=135.94 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=64.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccC-CccCcHhhhCCCC-eeEE
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLA-DRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~-d~s~TL~eagL~n-aviv 254 (257)
.++|+||||||||+|+++||+.+|||++||+||.+.. ....+|.|++ +||+|.|+ |.++||+||||.| ++|+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~-~~~~~f~L~t-~fPrk~l~~d~~~TL~e~gL~p~a~L~ 94 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YHKSLYRLST-SFPRRALEVEGGSSLEDIGITVDTVLN 94 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CCTTTEEEEC-SSSCCBCCCCSSCBHHHHTCSSCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcC-CCCCCeEEEe-CCCCcCCCCCCCCCHHHcCCCCCeEEE
Confidence 6799999999999999999999999999999999753 3357899999 99999998 7899999999998 4443
No 8
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.86 E-value=2.7e-09 Score=79.52 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=57.3
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccC--CccCcHhhhCCCC-eeEEe
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLA--DRTQTIEQAGLAN-SVVIQ 255 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~--d~s~TL~eagL~n-avivq 255 (257)
+|+||+.+|+.++..|+.++||+||+.+|.....-....+.|+. +||+|.|+ |++.||+++||.+ ++|+.
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~-~~p~k~l~l~~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILV-GYPPECLDLSDRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE-SSCCCCCCCCCSSCBTTTSSCCTTCEEEC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEe-CCCCcccccCCCCCCHHHcCCCCCCEEEE
Confidence 68999999977543399999999999999987543346788998 99999986 4689999999996 55553
No 9
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.67 E-value=3.3e-05 Score=56.86 Aligned_cols=68 Identities=4% Similarity=0.102 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCC-cccC-CccCcHhhhCCCC-eeE
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPP-KVLA-DRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~-k~l~-d~s~TL~eagL~n-avi 253 (257)
..||||.++|... +.+..+.|+++|++.|....+.....|.|.. +||+ +.|. +.++||+++||.+ ..|
T Consensus 5 m~lRvrs~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~-~~~p~~~l~~~~~~~l~~lgl~hGd~l 75 (80)
T 2pjh_A 5 IIIRVQSPDGVKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYI-NRNKTGEITASSSKSLHLLKIKHGDLL 75 (80)
T ss_dssp CCCEEECSSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCC-SCCGGGGSSSCCCCTTTTTCCCTTCCE
T ss_pred EEEEEECCCCCEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEe-cCCCCCcccCCCCCCHHHcCCCCCCEE
Confidence 4689999999653 3488999999999999987654456788887 9998 6774 4688999999986 444
No 10
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.45 E-value=0.00086 Score=47.86 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
...+|.||..+|+.+.+.+..++||++|.+.|.....-......|+. ..+.|.| +.||.+.|+.+ ++|
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~L~d-~~tL~~~~i~~g~~i 74 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF---KGKALAD-GKRLSDYSIGPNSKL 74 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEECCT-TSBGGGGTCCSSBCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCeECCC-CCcHHHcCCCCCCEE
Confidence 45788999999998899999999999999999886432344566654 6888876 68999999986 544
No 11
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.44 E-value=0.00081 Score=51.66 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=56.1
Q ss_pred CCceEEEEEcCC----CCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 181 LPSTSVQIRLAD----GTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 181 ~p~t~iqIRl~d----G~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
...++|+||+++ |+.+.+.+..++||.+|..-|.....-......|+. --|.|.| +.||++.||.+ ++|+
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~---~GKiL~D-~~TL~~y~I~~gsti~ 87 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVI---NKKQLQL-GKTLEEQGVAHNVKAM 87 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE---TTEECCT-TSBHHHHTCCSSEEEE
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEe---CCeECCC-CCcHHHcCCCCCCEEE
Confidence 467899999999 778999999999999999999886432244566664 5889977 58999999995 5543
No 12
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.43 E-value=0.00086 Score=48.24 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
...|.||..+|+.+.+.+..++||.+|.+.|.....-......|+ |..+.|.| +.||.+.++.+ ++|.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~---~~g~~L~d-~~tL~~~~i~~~~~l~ 71 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKWSTLF 71 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBTGGGTCCTTCEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCCHHHcCCCCCCEEE
Confidence 467899999999999999999999999999988543233456665 46788987 58999999995 5553
No 13
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.41 E-value=0.00064 Score=47.71 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=52.0
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.|.||..+|+.+...++.++||++|.+.|.....-......|+. ..+.|.| +.||++.|+.+ ++|
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d-~~tL~~~~i~~g~~i 67 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQRESTL 67 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-TCBTGGGTCCTTCEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCeECCC-CCcHHHcCCCCCCEE
Confidence 58899999998999999999999999999875422234556654 6788877 68999999996 544
No 14
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.38 E-value=0.00084 Score=47.07 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=51.8
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.|.||..+|+.+.+.+..++||++|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d-~~tL~~~~i~~g~~i 67 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMND-EKTAADYKILGGSVL 67 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 6889999999999999999999999999987542223455665 46788876 58999999996 544
No 15
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.34 E-value=0.00094 Score=49.73 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=55.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
.....|.||..+|+.+.+.+..++||.+|...|.... .....|+. -.+.|.|++.||.+.|+.+ ++|.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~---~Gk~L~D~~~tL~~y~i~~g~~i~ 73 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY---QGRLLQDPARTLSSLNITNNCVIH 73 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE---TTEECCCSSCBTTTTTCCTTEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE---CCEEccCCcCCHHHcCCCCCCEEE
Confidence 4567899999999999999999999999999998754 34566654 6789998779999999986 5553
No 16
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.24 E-value=0.0028 Score=45.99 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
+...|.||..+|+.+.+.+..++||.+|...|.....-......|+. -.+.|+| +.||.+.++.+ ++|
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~L~d-~~tL~~~~i~~g~~i 74 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF---QGQVLQD-WLGLGIYGIQDSDTL 74 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE---TTEECCS-SSBHHHHTCCTTEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE---CCEEccC-CCCHHHCCCCCCCEE
Confidence 46788999999998999999999999999999886432345566654 5788876 58999999986 554
No 17
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.23 E-value=0.0015 Score=48.85 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=52.4
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
+|.||..+|+.+.+.+..+.||++|...|.....-......|+. -.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~---~Gk~L~D-~~tL~~~gi~~g~~i 67 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTL 67 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE---TTEECCT-TSBTGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-CCCHHHcCCCCCCEE
Confidence 68899999998999999999999999999886432234566654 6788877 68999999996 554
No 18
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=97.23 E-value=0.002 Score=46.67 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=54.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
.....|.||..+|+.+.+.+..++||.+|...|.....-......|+. -.+.|+| +.||.+.|+.+ ++|.
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~L~d-~~tL~~~~i~~~~~i~ 80 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMND-EKTAADYKILGGSVLH 80 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCT-TSBGGGGTCCTTCEEE
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCeECCC-CCcHHHcCCCCCCEEE
Confidence 345789999999999999999999999999999875422234455654 5578877 68999999995 5554
No 19
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=97.22 E-value=0.0026 Score=46.91 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=55.1
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 180 NLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 180 s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
......|.||..+|+.+.+.+..++||.+|...|.....-......|+. -.+.|.| +.||.+.|+.+ ++|.
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-~~tL~~~gi~~g~~i~ 85 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTLH 85 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-TCBTGGGTCCTTCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE---CCeECCC-cCcHHHCCCCCCCEEE
Confidence 3456789999999999999999999999999999885422234456654 4678877 58999999996 5543
No 20
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=97.20 E-value=0.0021 Score=45.90 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
+...|.||..+|+.+.+.+..++||.+|...|.....-......|+. -.+.|+| +.||.+.|+.+ ++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~L~d-~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLED-QLPLGEYGLKPLSTV 71 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-TSBGGGGTCCTTCEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE---CCEECCC-CCcHHHCCCCCCCEE
Confidence 45789999999999999999999999999999875322234456654 5688887 68999999996 554
No 21
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.10 E-value=0.0014 Score=47.16 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
...|.||..+|+.+.+.+..++||.+|.+.|.....-......|+. -.+.|+| +.||.+.++.+ ++|.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~---~g~~L~d-~~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIHNHSALY 71 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TBEECCT-TCBTTTTTCCTTCEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCeECCC-CCCHHHCCCCCCCEEE
Confidence 3578999999999999999999999999999885422234566654 5688877 57999999995 5543
No 22
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.09 E-value=0.0044 Score=46.35 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=54.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 180 NLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 180 s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
+.....|.||..+| ...+.+..++||++|...|.....-......|+ |..+.|.|++.||.+.|+.+ ++|
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D~~~tL~~ygI~~gstl 82 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY---YSGIELADDYRNLNEYGITEFSEI 82 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE---ETTEEECCTTSBHHHHTCCTTEEE
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE---ECCEECCCCcccHHHCCCCCCCEE
Confidence 34567899999888 778899999999999999988642224455665 46789988559999999986 544
No 23
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.07 E-value=0.0056 Score=44.61 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=53.2
Q ss_pred CceEEEEEcCCC-CEEEE-EeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADG-TRLIA-HFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG-~rlv~-~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
....|.||..+| +.+.+ .+..++||.+|...|.....-......|+. -.+.|.| +.||.+.|+.+ ++|
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~gk~L~d-~~tL~~~~i~~g~~i 76 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY---RGKQLEN-GYTLFDYDVGLNDII 76 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE---TTEECCS-SSBHHHHTCCTTCEE
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCeECCC-CCCHHHCCCCCCCEE
Confidence 457889999999 67888 599999999999999886432345566654 5788876 68999999986 544
No 24
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=97.05 E-value=0.0036 Score=45.80 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCCeeEE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVI 254 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~naviv 254 (257)
+...|.||..+|+.+.+.+..++||.+|...|.....-......|+. =.+.|.| +.||.+.|+-+++|.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~L~d-~~tL~~~~i~g~~i~ 72 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRVLQD-DKKLQEYNVGGKVIH 72 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-TSBGGGGTCTTEEEE
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCeECCC-CCCHHHcCCCCcEEE
Confidence 45689999999999999999999999999999875422234456654 5688877 689999999445553
No 25
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=97.00 E-value=0.0029 Score=44.57 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
.+|.||. +|+...+.+..++||++|...|.....-......|+ |..+.|.| +.||++.|+.+ ++|.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i~ 71 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI---YSGKILKD-DQTVESYHIQDGHSVH 71 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE---ECCeEcCC-CCCHHHcCCCCCCEEE
Confidence 5677888 898889999999999999999987542223455665 46788877 48999999985 5553
No 26
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=97.00 E-value=0.005 Score=44.34 Aligned_cols=68 Identities=13% Similarity=0.257 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhC--CC-CCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASR--PG-TARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~--p~-~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
...|.||..+|+.+.+.+..++||++|...|.... .. ......|+. -.+.|+| +.||.+.|+.+ ++|.
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~---~Gk~L~D-~~tL~~~~i~~g~~i~ 76 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKILSD-DVPIRDYRIDEKNFVV 76 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE---TTEECCT-TSBGGGGCCCTTSEEE
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE---CCEECcC-CCCHHHcCCCCCCEEE
Confidence 46789999999999999999999999999998851 22 234556654 5788876 58999999985 5553
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0036 Score=46.96 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
....|.||..+|+.+.+.+..++||.+|...|.....-......|+. -.+.|+| +.||.+.|+.+ ++|.
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-~~tL~~~~i~~g~~i~ 90 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTLH 90 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-TCBSGGGTCCTTEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEECCC-CCcHHHCCCCCCCEEE
Confidence 35789999999999999999999999999999885432234556654 6688876 68999999996 5543
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.96 E-value=0.0038 Score=45.81 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
...|.||..+|+.+.+.+..++||++|...|.....-......|+ |-.+.|+| +.||.+.|+.+ ++|
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~~I~~g~~i 71 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLED-QLPLGEYGLKPLSTV 71 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE---SSSSCCCT-TSBHHHHHCSTTCEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 467889999999999999999999999999988643234455555 46788876 68999999986 554
No 29
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.95 E-value=0.0038 Score=44.52 Aligned_cols=67 Identities=10% Similarity=0.199 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
...|.||..+|+.+.+++..++||++|.+.|.....-......|. |-.+.|.| +.||++.++.+ ++|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~---~~G~~L~d-~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEEEDVI 70 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCHHHHTCCTTEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE---ECCEEeCC-CCCHHHcCCCCCCEE
Confidence 357889999999999999999999999999987542223455554 57899987 48999999996 554
No 30
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.95 E-value=0.0032 Score=46.56 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
..|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~---~~G~~L~d-~~tL~~~~i~~~~~i~ 69 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTLH 69 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE---ECCEECCC-CCcHHHcCCCCCCEEE
Confidence 46899999999999999999999999999988542223445565 46788876 57999999985 5543
No 31
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=96.93 E-value=0.0039 Score=45.84 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=52.1
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
.|.||..+|+.+.+.+..++||.+|...|.....-......|+. -.+.|+| +.||.+.|+.+ ++|.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-~~tL~~~~i~~g~~l~ 68 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMND-EKTAADYKILGGSVLH 68 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-TSBTTTTTCCTTCEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE---CCeECCC-CCcHHHcCCCCCCEEE
Confidence 58899999999999999999999999999875422234456654 5688877 68999999996 5543
No 32
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.89 E-value=0.0065 Score=45.25 Aligned_cols=65 Identities=12% Similarity=0.256 Sum_probs=51.7
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhC--CC-CCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASR--PG-TARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~--p~-~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
+|.||..+|+.+.+.+..++||++|...|.... .. ......|+. -.+.|+| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~---~Gk~L~D-~~tL~~ygI~~g~~i 70 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY---AGKILND-DTALKEYKIDEKNFV 70 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEECCT-TSBGGGGTCCSSSEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE---CCEECCC-cCcHHHCCCCCCCEE
Confidence 688999999999999999999999999998862 12 234566654 5788876 58999999986 554
No 33
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.88 E-value=0.0059 Score=44.44 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCCeeEE
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVI 254 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~naviv 254 (257)
.....|.||..+|+...+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.|+-+++|.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~g~~i~ 84 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI---YQGRVLQD-DKKLQEYNVGGKVIH 84 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCTTEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCEECCC-CCcHHHcCCCCcEEE
Confidence 34578999999999999999999999999999987532223345555 45688887 689999999445553
No 34
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.87 E-value=0.0064 Score=45.12 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=52.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
....+|.||.. |+.+.+.+..++||.+|.+.|.....-......|+. -.+.|+| +.||.+.|+.+ ++|
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-~~tL~~~gi~~g~~i 83 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF---TGKILRD-QDILSQRGILDGSTV 83 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE---TTEECCT-TSCHHHHTCCTTEEE
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEECCC-cCCHHHCCCCCCCEE
Confidence 34577888888 888999999999999999999886422234455543 5788876 58999999986 444
No 35
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.87 E-value=0.0077 Score=45.53 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=52.9
Q ss_pred ceEEEEEcCCC----CEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 183 STSVQIRLADG----TRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 183 ~t~iqIRl~dG----~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
...|.||..+| +.+.+.+..++||++|...|.....-......|+. -.+.|.|+..||.+.|+.+ ++|+
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~gk~L~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY---MEQLLTDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE---TTEEECCSSSBHHHHTCCTTEEEE
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE---CCEECCCCcccHHHCCCCCCCEEE
Confidence 36688888755 57789999999999999999886432334556664 4588988778999999985 5554
No 36
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.86 E-value=0.0025 Score=49.27 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCC---C------------cCeEEEecCCCCcccCCccCcHhhhC
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT---A------------RNYQLQMMGFPPKVLADRTQTIEQAG 247 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~---~------------~~f~L~t~~fP~k~l~d~s~TL~eag 247 (257)
..+|.|+..+|+.+.+.+..++||.||..-|.....-. . ..|.|+ |..+.|.|++.||++.|
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li---~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT---SAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE---SSSCEECCSSSBHHHHT
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE---eCCcCccCCcCCHHHcC
Confidence 47899999999999999999999999999998753110 0 246775 58899988889999999
Q ss_pred CCC-eeE
Q 025134 248 LAN-SVV 253 (257)
Q Consensus 248 L~n-avi 253 (257)
+.+ ++|
T Consensus 84 I~~g~~l 90 (105)
T 1v2y_A 84 IRNRDEV 90 (105)
T ss_dssp CCSSEEE
T ss_pred CCCCCEE
Confidence 996 544
No 37
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.84 E-value=0.021 Score=44.98 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
...+|.||.. |+.+.+.+..++||.+|...|.....-......|+. -.+.|+| +.||.+.|+.+ ++|
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-~~tL~dygI~~gstI 98 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF---AGKILKD-QDTLIQHGIHDGLTV 98 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE---TTEEEST-TSCGGGTTCSSSEEE
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE---CCEEcCC-CCCHHHcCCCCCCEE
Confidence 4578888888 888999999999999999999885422234556654 5788876 58999999986 444
No 38
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=96.84 E-value=0.0054 Score=47.13 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
....|.||..+|+.+.+.+..++||.+|...|.....-......|+. -.+.|.| +.||.+.|+.+ ++|
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-~~tL~~~gI~~gs~I 102 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTL 102 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEECCS-SCBTTTTTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE---CCEECCC-CCcHHHcCCCCCCEE
Confidence 46789999999999999999999999999999885422345566664 5788876 68999999985 544
No 39
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.82 E-value=0.0047 Score=43.79 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCCEE-EEE-eCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 183 STSVQIRLADGTRL-IAH-FNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 183 ~t~iqIRl~dG~rl-v~~-fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
...|.||..+|+.+ .+. +..++||++|..-|.....-......|+. -.+.|+| +.||.+.|+.+ ++|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~---~g~~L~d-~~tL~~~~i~~g~~i 71 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY---RGKQMED-GHTLFDYEVRLNDTI 71 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-TCBTTTTTCCTTCEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-CCCHHHcCCCCCCEE
Confidence 35789999999885 788 99999999999999885422234556654 5788876 58999999985 554
No 40
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.81 E-value=0.0078 Score=45.84 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
....|.||..+|+.+.+.+..++||++|...|.....-......|+. -.+.|.| +.||.+.|+.+ ++|.
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-~~tL~~ygI~~g~ti~ 91 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF---SGRPLTD-KMKFEELKIPKDYVVQ 91 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE---TTEECCT-TSHHHHCCCSSSCEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE---CCEECCC-CCcHHHcCCCCCCEEE
Confidence 45788999999998999999999999999999875422244566664 5688876 68999999985 5543
No 41
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.81 E-value=0.0048 Score=46.72 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=54.7
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 178 DENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 178 d~s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
....+...|-|+...|+.+.+.+++++||++|.+-|+....-....-.|. |=.+.|.| ..||++.++.+ ++|
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLi---f~Gk~LkD-~~TL~dY~I~dgstL 88 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQ---KGGSVLKD-HISLEDYEVHDQTNL 88 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEE---eCCEEccC-cCCHHHcCCCCCCEE
Confidence 34567889999999999999999999999999999987532123445565 46688888 58999999996 444
No 42
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.81 E-value=0.0043 Score=45.60 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
..|.||..+|+.+.+.+..++||++|.+-|.....-......|+. -.+.|.| +.||++.|+.+ ++|
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-~~tL~~~gi~~g~~i 76 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTL 76 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-TSBSGGGTCCTTCEE
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-CCcHHHcCCCCCCEE
Confidence 568899999999999999999999999999875422234566654 5788877 68999999986 544
No 43
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.75 E-value=0.013 Score=44.45 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
...+|.||..+|+ ..+.+..++||.+|+..|.....-......|+. -.+.|.| +.||.+.|+.+ ++|
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-~~tL~~~gi~~g~~i 83 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKILKD-PDSLAQCGVRDGLTV 83 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE---TTEECCT-TSCHHHHTCCTTEEE
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-cCcHHHcCCCCCCEE
Confidence 4578889988885 688999999999999999875422244566664 5688876 68999999986 444
No 44
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.68 E-value=0.019 Score=42.16 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCC-----CCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLH-----HTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s-----~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
...+|.|+. .|+...+.+..+ .||.+|...|.....-....-.|+. -.+.|.|++.||.+.|+.+ +.|+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~---~Gk~L~D~~~~L~~~~i~~g~~i~ 80 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF---KGKSLKEMETPLSALGIQDGCRVM 80 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEEECCSSSBHHHHTCCSSEEEE
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE---CCeecCCCcccHHHCCCCCCCEEE
Confidence 357788887 477888899985 9999999999886432345566664 5788998889999999986 5443
No 45
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=96.67 E-value=0.0068 Score=44.37 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcc-cCCccCcHhhhCCCC-eeE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKV-LADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~-l~d~s~TL~eagL~n-avi 253 (257)
-.+|.||..+|+...+.+..++||++|..-|.....-......|+ |-.+. |+| +.||++.|+.+ ++|
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~lL~D-~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI---VDGIVILRE-DLTVEQCQIVPTSDI 78 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCCS-SSBHHHHTCCTTSCE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE---ECCEEecCC-cCCHHHcCCCCCCEE
Confidence 468999999999999999999999999999988643223455665 46788 766 68999999986 544
No 46
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.67 E-value=0.0071 Score=45.31 Aligned_cols=68 Identities=10% Similarity=0.194 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
....|.||..+|+.+.+++..++||++|...|.....-......|+ |-.+.|.| +.||++.++.+ ++|
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLi---f~Gk~L~d-~~tl~dy~i~~g~~I 88 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEEEDVI 88 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCHHHHTCCTTCEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE---ECCeEcCC-CCCHHHCCCCCCCEE
Confidence 4578889999999999999999999999999987542223455565 47889987 58999999985 544
No 47
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.65 E-value=0.0061 Score=48.76 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCC-CcCeEEEecCCCCc---------------------------c
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPPK---------------------------V 235 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~-~~~f~L~t~~fP~k---------------------------~ 235 (257)
-.|+|||+||+...++.+.+.||..+-..|...-.-. ...|.|.. ..|.. .
T Consensus 12 r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 12 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR-ELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEE-ECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred ccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccc-cccccccccCchhhccccccccchhHHHHHHHH
Confidence 3699999999999999999999999999998854222 35688886 54422 1
Q ss_pred --------cCCccCcHhhhCCC-CeeEEee
Q 025134 236 --------LADRTQTIEQAGLA-NSVVIQK 256 (257)
Q Consensus 236 --------l~d~s~TL~eagL~-navivqk 256 (257)
.-|.+.||.|-|+. +.+|+.|
T Consensus 91 L~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 91 LHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred hcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 12558999999999 4777765
No 48
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.007 Score=46.20 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
..|.||..+|+.+.+.+..++||.+|...|.....-......|+. -.+.|.| +.||.+.|+.+ ++|.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-~~tL~~~~i~~g~~i~ 69 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY---SGKVLQD-SKTVSECGLKDGDQVV 69 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE---TTEECCT-TSBTTTTTCCTTCEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCEECCC-cCCHHHcCCCCCCEEE
Confidence 468899999999999999999999999999885422234456654 5788887 68999999995 5553
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.56 E-value=0.012 Score=44.46 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.....|.||..+|+ ..+.+..++||.+|.+.|.....-......|+. -.+.|+| +.||.+.|+.+ ++|
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-~~tL~~ygI~~gstI 88 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKILKD-PDSLAQCGVRDGLTV 88 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-TSBHHHHTCCTTCEE
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-cCcHHHCCCCCCCEE
Confidence 45678999999885 688999999999999999875422234555654 5788876 58999999986 444
No 50
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=96.55 E-value=0.0094 Score=45.84 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
...|.||..+|+.+.+++..++||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~gI~~gs~I 102 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 102 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTTTTTCCTTCEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 578899999999999999999999999999988542223455665 46788887 57999999995 554
No 51
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.54 E-value=0.012 Score=45.11 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=55.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 180 NLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 180 s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
..+...|-|+...|+.+.+.+..++||++|.+-|.....-....-.|+ |..|.|.| +.||.+.|+.+ ++|
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi---~~Gk~L~D-~~TL~dygI~~gstl 95 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK---KWYTIFKD-HVSLGDYEIHDGMNL 95 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCS-SCBHHHHTCCTTEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 345688999999999999999999999999999988632123344554 56899977 69999999996 554
No 52
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=96.50 E-value=0.013 Score=44.22 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
....|.||.. |+.+.+.+..++||++|...|.....-......|+. -.+.|+| +.||.+.|+.+ ++|
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-~~tL~~~gI~~g~~I 91 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF---AGKILKD-QDTLSQHGIHDGLTV 91 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE---TTEEECT-TCCTGGGTCCTTCEE
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-cCcHHHcCCCCCCEE
Confidence 4578889988 888899999999999999999875422234555654 5788876 58999999986 444
No 53
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.45 E-value=0.032 Score=43.69 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCC--------CcCeEEEecCCCCcccCCccCcHhhhCCC
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT--------ARNYQLQMMGFPPKVLADRTQTIEQAGLA 249 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~--------~~~f~L~t~~fP~k~l~d~s~TL~eagL~ 249 (257)
.....|.||+.+|....+.+..++||.+|.+.|....|.. .....|+ |=-|.|+| +.||.+.++.
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI---y~GK~LeD-~~TL~~y~I~ 86 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI---YQGRFLHG-NVTLGALKLP 86 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE---ETTEEECS-SCBTTTTTCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE---ECCcCCCC-CCcHHHcCCC
Confidence 3457889999999999999999999999999999843221 2345555 46788987 5899999985
No 54
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.42 E-value=0.018 Score=44.03 Aligned_cols=69 Identities=10% Similarity=0.173 Sum_probs=53.6
Q ss_pred CceEEEEEcC---CCCEEEEEeCC-CCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 182 PSTSVQIRLA---DGTRLIAHFNL-HHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 182 p~t~iqIRl~---dG~rlv~~fn~-s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
+...|.||.+ +|+.+.+.+.. ++||.+|..-|.....-....-.|+. -.+.|+| +.||.+.|+.+ ++|.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~L~D-~~tL~~y~I~~g~~l~ 99 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG---KAGFLKD-NMSLAHYNVGAGEILT 99 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC---SSSBCCT-TSBTTTTTCSSSCEEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEECCC-CCcHHHCCCCCCCEEE
Confidence 4578999998 89889999997 99999999999886422234556654 5677777 68999999996 5543
No 55
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.41 E-value=0.012 Score=48.27 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=54.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 180 NLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 180 s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
+.+...|.||..+|+.+.+.+..++||.+|...|.....-......|+. -.+.|+| +.||.+.||.+ ++|
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~---~g~~L~d-~~tL~~~~i~~~~~l 87 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTL 87 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-TCBTGGGTCCTTCEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCccccc-cCCHhHcCCccccee
Confidence 4456889999999999999999999999999999885422234456654 5688877 68999999995 444
No 56
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.41 E-value=0.028 Score=41.42 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCC--EEEEEeCCCCCHHHHHHHHHhhCCC--CCcCeEEEecCCCCcccCCccCcHhhh--CCCC-eeE
Q 025134 182 PSTSVQIRLADGT--RLIAHFNLHHTISDIHSFIDASRPG--TARNYQLQMMGFPPKVLADRTQTIEQA--GLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~--rlv~~fn~s~TI~dl~~fi~~~~p~--~~~~f~L~t~~fP~k~l~d~s~TL~ea--gL~n-avi 253 (257)
...+|.||..+|+ .+.+.+..++||.+|.+.|....+. ......|+. -.+.|.| +.||.+. ++.+ ++|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~---~Gk~L~D-~~tL~~~~~~i~~~~~i 80 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY---SGKLLLD-HQCLRDLLPKQEKRHVL 80 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEECCS-SSCHHHHSCSSSCSEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE---CCEECcC-cCCHHHHhcCCCCCCEE
Confidence 3478999999998 5666677999999999999987532 245566764 5889987 4899999 9986 444
No 57
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=96.28 E-value=0.016 Score=42.98 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
...|.||. |+.+.+.+..++||.+|...|.....-......|+. -.+.|+| +.||++.|+.+ ++|
T Consensus 19 ~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-~~tL~~y~I~~gstI 84 (93)
T 2l7r_A 19 SMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL---AGAPLED-EATLGQCGVEALTTL 84 (93)
T ss_dssp -CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE---TTEECCT-TSBHHHHTCCSSCEE
T ss_pred cEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE---CCEECCC-CCcHHHCCCCCCCEE
Confidence 35667776 888899999999999999999885422234566654 5788876 68999999986 544
No 58
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=96.25 E-value=0.023 Score=43.80 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=53.2
Q ss_pred CCceEEEEEcCC----------CCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 181 LPSTSVQIRLAD----------GTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 181 ~p~t~iqIRl~d----------G~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
....+|.|++++ |+.+.+.+..++||.+|...|.....-......|+. -.+.|.| +.||.+.++.+
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~L~D-~~tL~~y~i~~ 98 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY---EGIFIKD-SNSLAYYNMAS 98 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE---TTEEECT-TSBHHHHTCCS
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE---CCEECCC-CCCHHHCCCCC
Confidence 346889999985 667889999999999999999886422244566654 5788876 58999999986
Q ss_pred -eeE
Q 025134 251 -SVV 253 (257)
Q Consensus 251 -avi 253 (257)
++|
T Consensus 99 g~~i 102 (115)
T 1we7_A 99 GAVI 102 (115)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 444
No 59
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.24 E-value=0.015 Score=43.45 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=49.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
....+|.|++ .|+.+.+.+..++||.+|.+-|.....-....-.|+ |..+.| |+. ||.+.+|.+ +.|+
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~---~~Gk~L-dd~-tL~~~~i~~g~~i~ 83 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM---YKGLVP-EDK-TLREIKVTSGAKIM 83 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB---SSSBCC-SSS-BHHHHCCCTTEEEE
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCeeC-CcC-cHHHCCCCCCCEEE
Confidence 3457788885 677888999999999999999988542222333443 678888 444 999999986 5543
No 60
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.016 Score=44.76 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.-.|.|+..+|+.+.+.+..++||.+|..-|.....-......|+. -.+.|.| +.||.+.|+.+ ++|
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-~~tL~~ygI~~gstI 76 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW---AGKQLED-GRTLSDYNIQRESTL 76 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-TCBTTTTTCCSSCEE
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCEECCC-CCcHHHCCCCCCCEE
Confidence 4578999999999999999999999999999885422234556654 5788876 68999999986 544
No 61
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=96.17 E-value=0.029 Score=42.47 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=51.9
Q ss_pred CCceEEEEEcCCCCEEEE--EeCCCCCHHHHHHHHHhhCCCC-CcCeEEEecCCCCcccCCccCcHhhhCC-C-CeeEE
Q 025134 181 LPSTSVQIRLADGTRLIA--HFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPPKVLADRTQTIEQAGL-A-NSVVI 254 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~--~fn~s~TI~dl~~fi~~~~p~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL-~-naviv 254 (257)
.+...|.||..+|+.+.+ .+..++||++|.+.|.....+. ...-.|+. -.+.|.| +.||.+.++ . +++|+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~L~D-~~tL~dy~I~~~g~ti~ 91 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKVLHD-NLFLSDLKVTPANSTIT 91 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE---TTEEECT-TCBGGGSCCBTTBCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE---CCEECcC-cCCHHHcCcCCCCCEEE
Confidence 456789999999987655 6679999999999994433332 34556654 5788987 589999999 6 45554
No 62
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=96.17 E-value=0.023 Score=41.82 Aligned_cols=70 Identities=10% Similarity=0.136 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCEEEE-EeCCCCCHHHHHHHHHhhCCCCCcCeEEEecC-CCCcccCCccCcHhhhCCCC-eeEE
Q 025134 182 PSTSVQIRLADGTRLIA-HFNLHHTISDIHSFIDASRPGTARNYQLQMMG-FPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~-~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~-fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
...+|.|+. .|+.+.+ .+..++||.+|..-|.....-....-.|+. . |-.+.|.| +.||.+.||.+ +.|+
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~-~k~~Gk~L~D-~~~L~~~~i~~g~~l~ 78 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLG-LKVKGKPAEN-DVKLGALKLKPNTKIM 78 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEES-CEETTEECCT-TSBHHHHTCCTTEEEE
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEe-eccCCcCcCC-CCCHHHcCCCCCCEEE
Confidence 346788886 6777788 889999999999999886433345566763 3 45678876 58999999985 5554
No 63
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.10 E-value=0.018 Score=43.24 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 182 PSTSVQIRLADGTRL-IAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 182 p~t~iqIRl~dG~rl-v~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
...+|.||. .|+.+ .+.+..++||.+|..-|.....-....-.|+ |..+.|.|+ ||.+.||.+ +.|+
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi---~~Gk~L~D~--tL~~~~I~~g~~i~ 74 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKGGTLKDD--DWGNIKMKNGMTVL 74 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE---ETTEECCSS--CCCSCCCCSSCEEE
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCcCCCCC--CHHHCCCCCCCEEE
Confidence 456778885 67777 5899999999999999988642223444554 578899885 999999985 5554
No 64
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=96.06 E-value=0.034 Score=42.16 Aligned_cols=69 Identities=10% Similarity=0.180 Sum_probs=52.1
Q ss_pred CCCceEEEEEcCCCC--EEEEEeCCCCCHHHHHHHHHhhCCCC--CcCeEEEecCCCCcccCCccCcHhhh--CCCCee
Q 025134 180 NLPSTSVQIRLADGT--RLIAHFNLHHTISDIHSFIDASRPGT--ARNYQLQMMGFPPKVLADRTQTIEQA--GLANSV 252 (257)
Q Consensus 180 s~p~t~iqIRl~dG~--rlv~~fn~s~TI~dl~~fi~~~~p~~--~~~f~L~t~~fP~k~l~d~s~TL~ea--gL~nav 252 (257)
+.....|.||.++|+ .+.+.+..++||.+|.+-|....++. .....|+. -.|.|.| +.||.+. ++.+..
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy---~Gk~L~D-~~tL~~y~~~I~~~~ 94 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY---SGRLLPD-HLQLKDILRKQDEYH 94 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE---TTEEECT-TSBTHHHHTTTCSEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE---CCEECCC-CCCHHHHhcCCCCCC
Confidence 345688999999998 46778899999999999999754332 24566664 5788986 5899999 998743
No 65
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.06 E-value=0.036 Score=42.18 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=51.9
Q ss_pred CceEEEEEcCCC---CEEEEEeCC---------CCCHHHHHHHHHhhCCC--CCcC-eEEEecCCCCcccCCccCcHhhh
Q 025134 182 PSTSVQIRLADG---TRLIAHFNL---------HHTISDIHSFIDASRPG--TARN-YQLQMMGFPPKVLADRTQTIEQA 246 (257)
Q Consensus 182 p~t~iqIRl~dG---~rlv~~fn~---------s~TI~dl~~fi~~~~p~--~~~~-f~L~t~~fP~k~l~d~s~TL~ea 246 (257)
...+|.||..+| ....+.|.. ++||.+|...|....+. .... ..|+ |-.+.|.| +.||.+.
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi---~~Gk~L~D-~~tL~~y 86 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLI---YCGRKLKD-DQTLDFY 86 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEE---ETTEECCT-TCBHHHH
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEE---ECCeECCC-CCcHHHc
Confidence 346789999999 778888665 59999999999987632 2345 5665 46788976 5899999
Q ss_pred CCCC-eeE
Q 025134 247 GLAN-SVV 253 (257)
Q Consensus 247 gL~n-avi 253 (257)
|+.+ ++|
T Consensus 87 ~i~~g~~i 94 (107)
T 1x1m_A 87 GIQPGSTV 94 (107)
T ss_dssp TCCTTCEE
T ss_pred CCCCCCEE
Confidence 9986 444
No 66
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=96.01 E-value=0.034 Score=44.03 Aligned_cols=64 Identities=17% Similarity=0.218 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCC--------CcCeEEEecCCCCcccCCccCcHhhhCCC
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT--------ARNYQLQMMGFPPKVLADRTQTIEQAGLA 249 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~--------~~~f~L~t~~fP~k~l~d~s~TL~eagL~ 249 (257)
....|.||+.+|+...+.+..++||++|.+.|....|.. .....|+ |=.|.|+| +.||.+.++.
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI---y~GK~LeD-~~TL~~y~I~ 87 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI---YQGRFLHG-NVTLGALKLP 87 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE---SSSSEEES-SCBTGGGCCC
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE---ECCcCCCC-CCcHHHcCCC
Confidence 357899999999999999999999999999998754321 1234454 57788887 5899999997
No 67
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.97 E-value=0.038 Score=41.17 Aligned_cols=74 Identities=11% Similarity=0.167 Sum_probs=54.1
Q ss_pred CceEEEEEcC---CCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEec--CCCCc--ccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLA---DGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMM--GFPPK--VLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~---dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~--~fP~k--~l~d~s~TL~eagL~n-avi 253 (257)
...+|.|+.+ +|..+..+|..+.||++|...|.....-......|... .+|.. .|+|++.||..-|+.+ ..|
T Consensus 8 ~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred ccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 4567888864 67789999999999999999998865333445566542 15533 3678899999999996 455
Q ss_pred Ee
Q 025134 254 IQ 255 (257)
Q Consensus 254 vq 255 (257)
..
T Consensus 88 ~V 89 (97)
T 1wjn_A 88 LV 89 (97)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.95 E-value=0.025 Score=44.69 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=51.2
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.|.||..+|+.+.+.+..++||++|...|.....-......|+. ..+.|+| +.||.+.|+.+ ++|
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~---~g~~L~d-~~tL~~~~i~~~~~l 67 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTL 67 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-TSBTGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE---CCeECcC-cccHHHhccCCCCee
Confidence 58899999999999999999999999999875422234456654 5788876 68999999986 444
No 69
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.93 E-value=0.033 Score=44.29 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHhhCCCC--C-----cCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 182 PSTSVQIRLADGTRL-IAHFNLHHTISDIHSFIDASRPGT--A-----RNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 182 p~t~iqIRl~dG~rl-v~~fn~s~TI~dl~~fi~~~~p~~--~-----~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
....|.||+.+|+.+ .+.|..++||.+|.+-|....|.. . ..-.|+ |-.|.|+| +.||.+.++..
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI---y~GK~LeD-~~TLsdy~I~~ 87 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI---SAGKVLEN-SKTVKDYRSPV 87 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE---ETTEECCT-TSBGGGGSCCT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE---ECCeECcC-CCcHHHcCCCc
Confidence 568899999999988 699999999999999998765432 1 223444 46788887 58999999985
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=95.91 E-value=0.027 Score=45.33 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCC-CCcccCCccCcHhhhCCCC-eeE
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGF-PPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~f-P~k~l~d~s~TL~eagL~n-avi 253 (257)
..|.||..+|+.+.+.+..++||.+|..-|.....-....-.|+. | ..+.|.| +.||.+.|+.+ ++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~--~~~g~~L~d-~~tL~~y~i~~~~~l 71 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAV--HPSGVALQD-RVPLASQGLGPGSTV 71 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEE--ETTCCBCCT-TSCGGGGTCCTTCEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE--cCCCCCCCC-CCCHHHcCCCCCCEE
Confidence 468899899999999999999999999999885422233455552 6 5788865 68999999995 444
No 71
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.026 Score=41.85 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCEEEEE--eCCCCCHHHHHHHH-HhhCCCC-CcCeEEEecCCCCcccCCccCcHhhhCC--CCeeEEe
Q 025134 184 TSVQIRLADGTRLIAH--FNLHHTISDIHSFI-DASRPGT-ARNYQLQMMGFPPKVLADRTQTIEQAGL--ANSVVIQ 255 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~--fn~s~TI~dl~~fi-~~~~p~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL--~navivq 255 (257)
..|-||..+|+.+.+. +..++||.+|.+.| .. ..+. .....|+. -.|.|.| +.||.+.++ .+++|..
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~-~~gip~~~QrLi~---~Gk~L~D-~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISE-EKASHISEIKLLL---KGKVLHD-NLFLSDLKVTPANSTITV 74 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHT-TSCSSSTTEEEEE---TTEECCT-TCBHHHHCCCGGGCEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHH-hcCCChHHEEEEE---CCEECcC-cCCHHHcCCCCCCCEEEE
Confidence 4688999999987776 55999999999999 55 3332 45566664 6789987 589999999 3577654
No 72
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=95.80 E-value=0.053 Score=40.70 Aligned_cols=72 Identities=7% Similarity=0.064 Sum_probs=53.4
Q ss_pred CCceEEEEEcCCCC--EEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCc---ccCCccCcHhhhCCCC-eeE
Q 025134 181 LPSTSVQIRLADGT--RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPK---VLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 181 ~p~t~iqIRl~dG~--rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k---~l~d~s~TL~eagL~n-avi 253 (257)
....+|.|+...++ .+.+++..++||++|..-|.....-....-.|+. ..+.+ .|.+++.||.+.|+.+ ++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~-~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQV-FKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEE-EETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEE-ecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 45678888887775 6899999999999999999885422244556665 43444 5656689999999986 554
No 73
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=95.79 E-value=0.034 Score=47.11 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
...|.||..+|+.+.+.+..++||.+|..-|.....-......|+ |-.+.|+| +.||.+.++.+ ++|.
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi---~~Gk~L~D-~~tL~dygI~~gstI~ 173 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTLH 173 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE---ETTEECCT-TCBGGGGTCCTTCEEE
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE---ECCEECCC-CCCHHHCCCCCCCEEE
Confidence 368899999999999999999999999999987542223445565 46788987 68999999985 5553
No 74
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.78 E-value=0.035 Score=40.47 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 183 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 183 ~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
+..+.+. .+|+.+.+.+..+.||++|...|.....-......|+. -.+.|+| +.||.+.|+.+ ++|.
T Consensus 12 ~~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-~~tL~~~gi~~g~~l~ 79 (85)
T 2kd0_A 12 TIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF---KGKVLVE-TSTLKQSDVGSGAKLM 79 (85)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE---TTEECCT-TCBTTTTTCCTTEEEE
T ss_pred cEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCeECCC-cCCHHHCCCCCCCEEE
Confidence 3444444 47888889999999999999999875422234556653 5788876 58999999986 5553
No 75
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.74 E-value=0.027 Score=42.97 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=48.7
Q ss_pred eEEEEEcCCCCEEEEEeC-CCCCHHHHHHHHHhhCCCCCcCeEEEecCC------CCc--cc---CCccCcHhhhCCCC-
Q 025134 184 TSVQIRLADGTRLIAHFN-LHHTISDIHSFIDASRPGTARNYQLQMMGF------PPK--VL---ADRTQTIEQAGLAN- 250 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn-~s~TI~dl~~fi~~~~p~~~~~f~L~t~~f------P~k--~l---~d~s~TL~eagL~n- 250 (257)
..|+||..+|+. .+.+. .++||.+|.+-|.....-......|...+. |+. .| .+++.||.+.||.+
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 579999999965 56788 999999999999876543333444432122 111 44 46689999999996
Q ss_pred eeEE
Q 025134 251 SVVI 254 (257)
Q Consensus 251 aviv 254 (257)
++|.
T Consensus 87 ~~L~ 90 (107)
T 1wf9_A 87 SMVY 90 (107)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 5554
No 76
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.71 E-value=0.0017 Score=45.83 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=49.1
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.|.||..+|+.+.+.+..++||++|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i 67 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI---FAGKELPN-HLTVQNCDLEQQSIV 67 (76)
Confidence 4778889998888999999999999999987532122334443 56788876 58999999986 443
No 77
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.59 E-value=0.04 Score=43.44 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
+...|.|+..+|+.+.+.+..++||.+|..-|.....-......|+. ..+.|+| +.||++.|+.+ ++|.
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~---~g~~L~d-~~tL~~~~i~~~~~i~ 144 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTLH 144 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-TSBTGGGTCCTTCEEE
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE---CCEECCC-CCCHHHcCCCCCCEEE
Confidence 34678899999999999999999999999999875422234566654 6788876 68999999985 5543
No 78
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.58 E-value=0.041 Score=40.66 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCEE--EE-EeCCCCCHHHHHHHHHhhCCC-CCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEEee
Q 025134 184 TSVQIRLADGTRL--IA-HFNLHHTISDIHSFIDASRPG-TARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVIQK 256 (257)
Q Consensus 184 t~iqIRl~dG~rl--v~-~fn~s~TI~dl~~fi~~~~p~-~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avivqk 256 (257)
..|-|+...|+.. .+ .+..++||.+|.+-|....+. ....-.|.. .+=.+.|.| +.||++.|+.+ ++|+.|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~-~~~Gk~L~D-~~tL~~y~i~~~stl~~K 86 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRL-DPKGKSLKD-EDVLQKLPVGTTATLYFR 86 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEES-STTSCCCCT-TCBTTTSSCCSEEEEEEC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEe-cCCCcCcCC-CCCHHHcCCCCCCEEEEE
Confidence 5677888888764 36 889999999999999885333 233345554 444678876 68999999996 666654
No 79
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=95.50 E-value=0.061 Score=43.18 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
+...|.||..+|+.+.+.+..++||++|..-|.....-......|+. -.+.|.| +.||.+.|+.+ ++|
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d-~~tL~~y~i~~g~~l 148 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLED-QLPLGEYGLKPLSTV 148 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-TSBGGGGTCCTTCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE---CCeecCC-CCCHHHcCCCCCCEE
Confidence 45788999999999999999999999999999875322235567764 5688887 68999999996 554
No 80
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.43 E-value=0.11 Score=40.95 Aligned_cols=70 Identities=13% Similarity=0.245 Sum_probs=53.2
Q ss_pred CCCceEEEEE-cCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCCeeE
Q 025134 180 NLPSTSVQIR-LADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVV 253 (257)
Q Consensus 180 s~p~t~iqIR-l~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~navi 253 (257)
.++..+|.|. .++|.+++..|..+.||++|.+.++....-....-.| -|-.|.|.| +.||++.|+.+.-.
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrL---Iy~GKiLKD-~eTL~~~gIk~g~T 82 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQI---RYSGKILKN-NETLVQHGVKPQEI 82 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEE---EETTEEECS-SCCHHHHSCCSSCE
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEE---EECCeEcCC-cchHHHcCCCCCCE
Confidence 4456778887 6788899999999999999999998753222333444 457999987 57999999986433
No 81
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=95.39 E-value=0.063 Score=44.34 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=51.9
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.|.||..+|+.+.+.+..++||.+|...|.....-......|+. -.+.|+| +.||.+.|+.+ ++|
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-~~tL~~y~I~~gstI 67 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTL 67 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEECCT-TSBGGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCccccC-cCcHHHcCCCCCCEE
Confidence 58899999999999999999999999999875432234556664 5678877 68999999996 544
No 82
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.019 Score=43.40 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=49.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
.+|.||. +|+.+.+.+..++||++|.+.|.....-......|+. -.+.|+| +.||.+.|+.+ ++|.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-~~tL~~~gI~~g~tI~ 95 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKILKD-DQTVESYHIQDGHSVH 95 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE---TTEECCT-TSBTTTTTCCTTEEEE
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEECCC-cCcHHHCCCCCCCEEE
Confidence 4677876 8888888999999999999999875422233445554 5688877 68999999996 5543
No 83
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=94.58 E-value=0.13 Score=41.99 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
+...|.||..+|+.+.+++..++||.+|..-|.....-......|+. -.+.|+| +.||.+.++.+ ++|.
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~D-~~tL~~y~i~~g~tl~ 164 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTLH 164 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCT-TSBSGGGTCCTTCEEE
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE---CCccCCC-CCcHHHhCCCCCCEEE
Confidence 45678899999999999999999999999999885422245566764 5788876 68999999996 5553
No 84
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=94.48 E-value=0.13 Score=46.65 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=55.1
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 180 NLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 180 s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
......|.||..+|+.+.+.+..++||++|.+-|.....-....-.|+. ..+.|+| +.||.+.|+.+ ++|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~---~Gk~L~D-~~TLsdygI~~gstL 300 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-GRTLSDYNIQKESTL 300 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-TSBTGGGTCCTTCEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe---CCeecCC-CCCHHHcCCCCCCEE
Confidence 3456789999999999999999999999999999875422234556654 5788876 68999999985 544
No 85
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.03 E-value=0.3 Score=36.99 Aligned_cols=67 Identities=9% Similarity=0.184 Sum_probs=47.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeEE
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
..+.+++ .|+.+.+.+..++||++|..-|.....-....-.|+ .||...|.| +.||.+.+|.+ ++|+
T Consensus 10 ~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi--~~~~gkL~D-~~tLs~~~I~~gstL~ 77 (100)
T 2dzm_A 10 LDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLK--GWKTGDVED-STVLKSLHLPKNNSLY 77 (100)
T ss_dssp EEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE--CCSSSCCCT-TSBHHHHCCCSEEEEE
T ss_pred EEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEE--ccCCCCCCC-cCCHHHcCCCCCCEEE
Confidence 4566666 677788899999999999999987532222222343 567666765 68999999996 5554
No 86
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=93.86 E-value=0.12 Score=47.98 Aligned_cols=68 Identities=13% Similarity=0.259 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhC--CCC-CcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASR--PGT-ARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~--p~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
...+|.||..+|+.+.+.+..++||.+|...|.... ... .....|+ |-.|.|.| +.||.+.||.+ ++|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi---y~GK~L~D-~~tL~dygI~~gstI 77 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI---YAGKILSD-DVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE---SSSSEECS-SSBTTTTCCCTTSCE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE---ECCeecCC-cCCHHHcCCCCCCEE
Confidence 356799999999999999999999999999998842 111 2344554 57899987 58999999995 444
No 87
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=93.61 E-value=0.012 Score=46.24 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.|.|+..+|+.+.+.+..++||++|..-|.....-......|+ |-.+.|+| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~~I~~gsti 67 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (128)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE---ECCEECCC-CCchhhhccCCCCEE
Confidence 4678889999999999999999999999977431112333443 57788876 68999999985 444
No 88
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.53 E-value=0.3 Score=36.61 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=53.3
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.|-|..++|.|...+...+.|+.+|.+-..+.-.-....|.|.. -+|.| |.++.+.=+||-| |.+
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh---~~k~l-DLSlpfRlsgLpnnAkL 76 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF---QRTVL-DLSLQWRFANLPNNAKL 76 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE---TTEEE-SSSCBHHHHCCCSSCEE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe---CCEec-cccceeEecCCCCCCEE
Confidence 68899999999999999999999998777665433467899987 46767 7789999999996 544
No 89
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=93.37 E-value=0.64 Score=34.84 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=52.1
Q ss_pred CCCceEEEEEcCCCC--EEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCc---ccCCccCcHhhhCCCC-eeE
Q 025134 180 NLPSTSVQIRLADGT--RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPK---VLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 180 s~p~t~iqIRl~dG~--rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k---~l~d~s~TL~eagL~n-avi 253 (257)
.....+|.|.....+ .+.++|..++||++|..-|.....-....-.|+..+=..+ .|.+++.||.+.++.+ ++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 456678888876664 6899999999999999999885422234556654121123 3556689999999986 554
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=93.23 E-value=0.54 Score=34.87 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
...+|.|+..+|+.+.+++..++++..|.+..+....-....+.|+ |--+.|.+ +.|.++++|-+
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 68 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 68 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 3467888888999999999999999999988877543234556655 46788876 48999999985
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=93.08 E-value=0.48 Score=33.22 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.+|.|+..+|+.+.+++..+++++.|.+..+....-....+.|+ |-.+.|.+ +.|.+++++-+ .+|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMEDEDTI 68 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEE---ETTEECCT-TCCTTTTTCCTTEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEE---ECCEEcCC-CCCHHHcCCCCCCEE
Confidence 46888889999999999999999999988776432223556655 46778876 48999999986 444
No 92
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=92.97 E-value=0.018 Score=47.12 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC-eeE
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.|.||..+|+.+.+.+..++||++|...|.....-......| -|-.+.|+| +.||.+.||.+ ++|
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrL---i~~Gk~L~D-~~tL~dygI~~gstL 67 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL---IFAGKQLED-GRTLSDYNIQKESTL 67 (152)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEE---EECCEEccc-cCcHHHcCCCCCCEE
Confidence 477889999988999999999999999997743211223334 357788877 58999999985 444
No 93
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.80 E-value=0.38 Score=35.87 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
...+|.|+-.+|+.+.+++..++++..|.+.++....-....+.|+ |--+.|.+ +.|+++++|-+
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 70 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 70 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 3467788888999999999999999999988876543223455554 56888876 48999999985
No 94
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.55 E-value=0.52 Score=34.72 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=49.1
Q ss_pred eEEEEEcCCCC-EEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCC-CCcc---cCCccCcHhhhCCCC-eeEE
Q 025134 184 TSVQIRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGF-PPKV---LADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 184 t~iqIRl~dG~-rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~f-P~k~---l~d~s~TL~eagL~n-aviv 254 (257)
.+|.|+..... ...+++..++||++|..-|.....-....-.|.. .- +.+. |.+++.||.+.|+.+ ++|.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~-~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~ 83 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL-YGADDKFYSKLDQEDALLGSYPVDDGCRIH 83 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE-ECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE-eCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence 66777766553 5889999999999999999886422234455554 33 2343 555679999999986 5543
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=92.47 E-value=1.1 Score=32.12 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 182 PSTSVQIRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 182 p~t~iqIRl~dG~-rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
...+|.|+..+|+ .+.+++..++++..|.+..+....-....+.|+ |=.+.|.+ +.|.++++|-+
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~~l~med 71 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFF---FDGTKLSG-KELPADLGLES 71 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEE---ETTEECCS-CCCHHHHTCCT
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 3467888889996 899999999999999988876532223445554 46777876 58999999985
No 96
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=92.43 E-value=0.65 Score=34.39 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
...+|.|+..+|+.+.+++..++++..|.+.++....-....+.|+ |=.+.|.+ +.|.++++|-+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~dl~med 80 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 80 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4567888888999999999999999999988876543233445554 56888876 48999999985
No 97
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.33 E-value=0.73 Score=35.06 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
...+|.|+-.+|+.+.+++..++++..|.+.++....-....+.|+ |--+.|.+ +.|.++++|-+
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 87 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 87 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE---SSSSBCCT-TSCTTTTTCCT
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4577888888999999999999999999988776542223445554 56778876 48999999985
No 98
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.30 E-value=0.64 Score=34.56 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
+-+.+++|-++--+..+.|.+..-++++|.-.|.....-....|.|.- ..=..+--|.+.+|.|.||..
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~-d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLK-DYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEES-CSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEec-CCCCCcccchhcchhhhhhhh
Confidence 357899999998888999999999999999999987755567888887 554444447789999999986
No 99
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=91.52 E-value=1 Score=34.64 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
...+|.|+..+|+.+.+++..++++..|.+.++....-....+.|+ |--+.|.+ +.|.++++|-+
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi---FdG~~L~~-~~Tp~dl~mED 89 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL---FDGTPIDE-TKTPEELGMED 89 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE---SSSCBCCS-SSHHHHHHCSS
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4577888888999999999999999999988776432223445554 57788876 48999999986
No 100
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=90.86 E-value=0.58 Score=36.61 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=44.7
Q ss_pred EEEEcCCCC-EEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCC
Q 025134 186 VQIRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLA 249 (257)
Q Consensus 186 iqIRl~dG~-rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~ 249 (257)
++||.--|+ .+.+.+..++||.+|..-|.....-......|+ |-.|.|+| +.||.+.|+.
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi---~~Gk~LeD-~~TLsdy~I~ 63 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY---KDDQLLDD-GKTLGECGFT 63 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBHHHHTCC
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE---ECCeECCC-CCCHHHcCcc
Confidence 455555565 478899999999999999987532223455665 46788876 6999999999
No 101
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=89.92 E-value=2 Score=32.76 Aligned_cols=64 Identities=5% Similarity=0.108 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
...+|.|+- +|+.+.+++..++++..|.+.++....-....+.|+ |=-+.|.+ +.|.++++|-+
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~---FdG~rl~~-~~Tp~dl~med 93 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL---YDGIRIQA-DQTPEDLDMED 93 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEE---ECCeEcCC-CCCHHHcCCCC
Confidence 456778888 899999999999999999988876442223445554 56778876 48999999985
No 102
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=89.04 E-value=0.68 Score=42.01 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecC-CCCcccCCccCcHhhhCCCC-eeEE
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMG-FPPKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~-fP~k~l~d~s~TL~eagL~n-aviv 254 (257)
...+|.|+. .|+...+.+..++||++|..-|.....-....-.|+. . |..+.|.| +.||.+.||.+ +.|+
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~-~k~~Gk~l~D-~~~L~~~~ik~g~~l~ 75 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN-LKYKGKTAAD-NVKISALELKPNFKLM 75 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETT-CBSSSSBCCT-TSBTTSSCCC--CEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEee-cccCCcccCc-cccHHHcCCCCCCEEE
Confidence 346788886 6888899999999999999999875422233445652 2 67788887 58999999995 5554
No 103
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=88.79 E-value=1.7 Score=33.50 Aligned_cols=72 Identities=10% Similarity=0.189 Sum_probs=49.0
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCc---ccCCccCcHhhhCCCC-eeEE
Q 025134 183 STSVQIRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPK---VLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 183 ~t~iqIRl~dG~-rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k---~l~d~s~TL~eagL~n-aviv 254 (257)
..+|.|+...+. .+.+++..+.||++|..-|.....-....-.|...+=..+ .|.+++.||.+.||.+ ++|.
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence 466777766554 5889999999999999999886422234455554110123 3455689999999986 5553
No 104
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=87.45 E-value=2.4 Score=32.96 Aligned_cols=66 Identities=9% Similarity=0.142 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
....+|+|+-.||..+.+++..+.++..|.+..+....-....+.++ |-.+.|.+ +.|.++++|-+
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFl---FDG~rI~~-~~TP~dL~MED 103 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEE 103 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEE---ECCeECCC-CCCHHHcCCCC
Confidence 35667788888999999999999999999987766432223455554 46778876 58999999986
No 105
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=85.25 E-value=1.8 Score=31.46 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=44.2
Q ss_pred eEEEEEcC-CCCE-EEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecC----CCCcccCCccCcHhhhCCCC-eeE
Q 025134 184 TSVQIRLA-DGTR-LIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMG----FPPKVLADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 184 t~iqIRl~-dG~r-lv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~----fP~k~l~d~s~TL~eagL~n-avi 253 (257)
.+|.|.-. .+.+ ...||..++||++|..-|.....-....-.|.... |..+.++| +.||.+-|+.+ ++|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~i 78 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAN-DKQLGYYQCRDEFVI 78 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCT-TSBGGGGTCCTTCEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCC-CCCHHHCCCCCCCEE
Confidence 34555432 2334 58999999999999999987532223344555311 33344444 69999999996 554
No 106
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=84.91 E-value=2.7 Score=32.10 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=43.6
Q ss_pred CceEEEEEcCC--C--CEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCC
Q 025134 182 PSTSVQIRLAD--G--TRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLA 249 (257)
Q Consensus 182 p~t~iqIRl~d--G--~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~ 249 (257)
...+++|.+.| + ..+.+.+..++||++|.+-|.....-....-.|.. -.+ +.+++.||.+.|+.
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~---ggk-ll~D~~TL~~ygI~ 88 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVI---GQR-LARDQETLHSHGVR 88 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTE-EECTTCBTGGGTCC
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEec---cCe-EccCcCcHHHcCCC
Confidence 35677777766 3 35788999999999999999875321222223443 455 44447999999994
No 107
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=82.38 E-value=13 Score=27.83 Aligned_cols=68 Identities=9% Similarity=0.144 Sum_probs=49.7
Q ss_pred CCCceEEEEEcCCCC-EEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCCe
Q 025134 180 NLPSTSVQIRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANS 251 (257)
Q Consensus 180 s~p~t~iqIRl~dG~-rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~na 251 (257)
.....+|+|+-.||. .+.+++..+.++..|.+..+....-....+.++ |=...|.. +.|.++++|-+.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~---FDG~rI~~-~~TP~dLdMEDg 90 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFF---FDGTKLSG-RELPADLGMESG 90 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEE---ETTEECCS-CSCHHHHTCCTT
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE---ECCEEcCC-CCCHHHcCCCCC
Confidence 345567888889995 789999999999999887766543233455554 45666765 579999999863
No 108
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=81.18 E-value=2.6 Score=32.90 Aligned_cols=59 Identities=10% Similarity=0.224 Sum_probs=42.2
Q ss_pred EEcCCCC-EEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 188 IRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 188 IRl~dG~-rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
||+--++ .+.+.+..++||.+|..-|.....-....-.|+ |=.+.|+| +.||.+.|+.+
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI---~~Gk~LeD-~kTL~dy~I~~ 64 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY---KDDQLLDD-GKTLGECGFTS 64 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTTTTTCCG
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE---eCCeECCC-cCCHHHcCCCc
Confidence 3444455 567789999999999999987432122344555 45688876 79999999986
No 109
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=77.05 E-value=0.49 Score=40.02 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHh
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIE 244 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~ 244 (257)
.|-||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|+| +.||.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLI---f~GK~LeD-~~TLs 57 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLV---NNGFIAPN-TELVT 57 (189)
T ss_dssp ------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEE---ecCeECCC-CCccc
Confidence 4778889999999999999999999999977431112334443 56788887 57887
No 110
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=76.59 E-value=9.8 Score=32.19 Aligned_cols=65 Identities=5% Similarity=0.092 Sum_probs=49.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
..-.+|+|+. +|..+.+++..++++..|.+..+....-....+.++ |-.+.|.+ +.|.+++++-+
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~---FdG~rI~~-~~TP~dL~MEd 91 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL---YDGIRIQA-DQTPEDLDMED 91 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 3456788875 899999999999999999987765432223444444 57888887 58999999986
No 111
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=75.97 E-value=9.4 Score=32.63 Aligned_cols=59 Identities=25% Similarity=0.251 Sum_probs=42.0
Q ss_pred EEEEeCCCCCHHHHHHHHHhhCCCC-CcCeEEEecCCC--CcccCCccCcHhhhCCCC-eeEE
Q 025134 196 LIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFP--PKVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 196 lv~~fn~s~TI~dl~~fi~~~~p~~-~~~f~L~t~~fP--~k~l~d~s~TL~eagL~n-aviv 254 (257)
++.+|...+||.+|.+.+...-.-. ...+.|-.+... ...|.|.+.||+||+|.. .+|+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~il 216 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLV 216 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEE
Confidence 4588999999999999998854222 236777752212 245667889999999995 4444
No 112
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=74.74 E-value=9.9 Score=32.37 Aligned_cols=64 Identities=5% Similarity=0.101 Sum_probs=48.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCCCcCeEEEecCCCCcccCCccCcHhhhCCCC
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 250 (257)
...+|+|+. ||..+.+++..++++..|.+.......-....+.++ |=-+.|.+ +.|.++++|-+
T Consensus 56 e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFL---FDGqRI~~-ddTPeDLdMED 119 (207)
T 3tix_A 56 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFL---YDGIEIQA-DQTPEDLDMED 119 (207)
T ss_dssp CEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEE---ETTEECCS-SCCTTTTTCCT
T ss_pred CcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEE---ECCeecCC-CCCHHHcCCCC
Confidence 456777874 899999999999999999988766543223444444 46777776 68999999986
No 113
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=69.80 E-value=8.7 Score=32.48 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=40.8
Q ss_pred EEEEeCCCCCHHHHHHHHHhhCCCC-CcCeEEEecCCCC--cccCCccCcHhhhCCCC-eeEE
Q 025134 196 LIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPP--KVLADRTQTIEQAGLAN-SVVI 254 (257)
Q Consensus 196 lv~~fn~s~TI~dl~~fi~~~~p~~-~~~f~L~t~~fP~--k~l~d~s~TL~eagL~n-aviv 254 (257)
.+..|...+||.+|.+.+...-.-. ...+.|-.+.... ..|+|.++||+||+|.+ -.|+
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~il 204 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLV 204 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEE
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEE
Confidence 5689999999999999998864222 2356665421122 34567789999999995 4443
No 114
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=63.62 E-value=17 Score=32.83 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCC----CCcCeEEEec-CCCCcc--cCCccCcHhhhCCCC-eeE
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPG----TARNYQLQMM-GFPPKV--LADRTQTIEQAGLAN-SVV 253 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~----~~~~f~L~t~-~fP~k~--l~d~s~TL~eagL~n-avi 253 (257)
.+|+|+++ +.....+|..+.||.|+...|....++ ...+|-|... ..|.+- | +.+.||+..++.+ +.|
T Consensus 4 ~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~~y~~~~~~~l 79 (371)
T 3ivf_A 4 LSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALDYYMLRNGDTM 79 (371)
T ss_dssp EEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGGGGTCCTTCEE
T ss_pred EEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHHHhCCCCCcee
Confidence 57899999 667799999999999999999876654 2568888861 123332 3 4467999999986 444
No 115
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=62.64 E-value=20 Score=32.25 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=47.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCC-CCcCeEEEecCCCC------cccCCccCcHhhhCC
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPG-TARNYQLQMMGFPP------KVLADRTQTIEQAGL 248 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~-~~~~f~L~t~~fP~------k~l~d~s~TL~eagL 248 (257)
.....++|.|+||+....++..+.|+.||.+-|.....- ...-|-|.. .-+. ...-+.+++|.+-+.
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~-~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR-ELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC-CC----------CCCTTSBTGGGTC
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE-EecccccchHHHHHhcCchhHhhCC
Confidence 445789999999999999999999999999999875422 235688876 4432 112245667766554
No 116
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=56.64 E-value=39 Score=24.33 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=51.5
Q ss_pred EEEEEc--CCCCEEEEEeCCCCCHHHHHHHHHhhCCCC--CcC-eEEEecCCCCcccCCccCcHhhhCCCCeeEEe
Q 025134 185 SVQIRL--ADGTRLIAHFNLHHTISDIHSFIDASRPGT--ARN-YQLQMMGFPPKVLADRTQTIEQAGLANSVVIQ 255 (257)
Q Consensus 185 ~iqIRl--~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~--~~~-f~L~t~~fP~k~l~d~s~TL~eagL~navivq 255 (257)
.|-|.| -.|+.+-+|+....||..|.+-|..+-.-. ..+ |.|.. --+...|++ +.+|.+.++.|+-++.
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv-~NK~~~L~~-~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRV-VNKDKVFSG-ECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEE-GGGTEEEET-TSBTGGGTCCTTCEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEE-ecCCEEEcC-CCEEeeCCcCCCCEEE
Confidence 455666 578889999999999999999888754322 234 88887 556666665 5899999999876654
No 117
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=55.67 E-value=14 Score=32.44 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=44.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCC-CcCeEEEecCCCC--cccCCccCcHhhh
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPP--KVLADRTQTIEQA 246 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~-~~~f~L~t~~fP~--k~l~d~s~TL~ea 246 (257)
....++|.|+||+.+...+..+.|+.||.+-|.....-. ..-|-|... =+. ...-|.+.+|.+.
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIW-DNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEE-EETTEEEECCTTSBHHHH
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEE-cCCCccchhccchhHHHh
Confidence 346789999999999999999999999999998854221 345777652 121 1223445666654
No 118
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=50.00 E-value=14 Score=32.78 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=36.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCC--CCCHHHHHHHHHhhCCCCCcCeEEEecCCCC
Q 025134 180 NLPSTSVQIRLADGTRLIAHFNL--HHTISDIHSFIDASRPGTARNYQLQMMGFPP 233 (257)
Q Consensus 180 s~p~t~iqIRl~dG~rlv~~fn~--s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~ 233 (257)
+.|..+|.|-|+||+...+.|.. +.|+++|.+-+. .......-|-|.. .-|.
T Consensus 2 ~~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~lg-L~~~~~~~FaL~~-~~~~ 55 (322)
T 4dxa_B 2 SPEFEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMR-LSQETQQYFTIWI-CSEN 55 (322)
T ss_dssp ---CCEEEEECTTSCEEEEECTTGGGCCHHHHHTTSS-CCTTGGGGEEEEE-ECSS
T ss_pred CCCceEEEEEEECCcEEEEEEcCCCCCcHHHHHHHhC-cCccccCeeEEEE-ECCc
Confidence 46888999999999999999999 999999955432 1111234688887 4454
No 119
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=47.52 E-value=47 Score=24.88 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=46.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhC-CCCCcCeEEEecCCCC----cccCCccCcHh
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASR-PGTARNYQLQMMGFPP----KVLADRTQTIE 244 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~-p~~~~~f~L~t~~fP~----k~l~d~s~TL~ 244 (257)
--|+|=+.||+...+.+..++|.+||-+.+.... ......|.|+- ..|- |.|+|...-++
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE-~~P~L~~ER~~EDHE~vve 74 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVE-CHPHLALERGLEDHESVVE 74 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEE-EETTTTEEEEECSSSCHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEE-ecCCCCcEEeccCchhHHH
Confidence 3578888999999999999999999999987643 22367899997 7885 55667654443
No 120
>4atu_I Neuronal migration protein doublecortin; hydrolase, microtubule-associated protein; HET: GDP GTP; 8.30A {Homo sapiens} PDB: 1uf0_A
Probab=39.87 E-value=15 Score=33.88 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=32.5
Q ss_pred CCceEEEEEeccc--------eeecCCCCccCCChhhHHHHHHHhcC-----CCCCcccCCC-CCC
Q 025134 67 EPIVHNIVFWANG--------FTVNDGPLRRLDDPENASFLESIKKS-----ECPKELEPAD-KRS 118 (257)
Q Consensus 67 ~~~~~~l~lw~nG--------F~VddGp~R~y~dP~n~~FL~~I~~G-----~~P~EL~~~~-~~~ 118 (257)
++.-..|+||||| |.|+-.-|+.|+ .||++|.+. .+|.-....| |++
T Consensus 62 ~~kAKrV~fyrNGD~~f~G~~~~V~~~r~~tfd-----~lL~~lT~~Ls~~v~LP~GVR~i~tp~G 122 (373)
T 4atu_I 62 EKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFD-----ALLADLTRSLSDNINLPQGVRYIYTIDG 122 (373)
T ss_dssp --CCEEEEEEESSCSSCCCEEEEECTTTCSSHH-----HHHHHHHHHSCCSSSCTTSCSEEEETTS
T ss_pred CccceEEEEEeCCCCCCCCeEEEECCcccCCHH-----HHHHHHHHHhhccCCCCceeEEEEcCCC
Confidence 4556899999999 788887777765 899987643 3455555556 444
No 121
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=38.79 E-value=57 Score=32.10 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=39.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCC-CCcCeEEEe
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPG-TARNYQLQM 228 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~-~~~~f~L~t 228 (257)
....++|.|+||+...+.+..+.|+.||.+.|.....- ...-|.|..
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 35678999999999999999999999999999886532 245688876
No 122
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=37.35 E-value=44 Score=31.81 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCCC--CcCeEEEe
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT--ARNYQLQM 228 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~~--~~~f~L~t 228 (257)
....++|.|+||+...+.+..+.|++||.+-|.....-. ..-|-|..
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 347789999999999999999999999999998864222 24588875
No 123
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=35.14 E-value=43 Score=29.16 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=44.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCC-CCcCeEEEecCCCCccc--CCccCcHhhhC
Q 025134 182 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPG-TARNYQLQMMGFPPKVL--ADRTQTIEQAG 247 (257)
Q Consensus 182 p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~-~~~~f~L~t~~fP~k~l--~d~s~TL~eag 247 (257)
....++|.|+|| .+...+..+.|++||.+-|.....- ...-|-|.. . ..... -|.+.+|.+.+
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~-~-~~~~~~wL~~~~~i~~q~ 86 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQY-T-IKDTVAWLKMDKKVLDHD 86 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEE-E-ETTEEEECCTTSBGGGSS
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEE-E-eCCcCeeCCCccCHHHcC
Confidence 356789999999 6789999999999999998875322 134588876 3 22221 25556777654
No 124
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=33.39 E-value=45 Score=28.63 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=43.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhCCC-CCcCeEEEecCCCCcc--cCCccCcHhhhCC
Q 025134 184 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPG-TARNYQLQMMGFPPKV--LADRTQTIEQAGL 248 (257)
Q Consensus 184 t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~p~-~~~~f~L~t~~fP~k~--l~d~s~TL~eagL 248 (257)
..|+|.|+|| .+.+.+..+.|++||.+-|.....- ...-|-|.. .-+... .-|.+.+|.+.+.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~-~~~~~~~~wLd~~~~l~~q~~ 67 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQY-QDTKGFSTWLKLNKKVTAQDV 67 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEE-EBTTSCEEECCSSSBGGGSCB
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEE-ECCCCceeecccccCHHhhcc
Confidence 4689999999 4679999999999999999875322 134588875 223322 2255667776543
No 125
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=27.71 E-value=2e+02 Score=21.74 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=51.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhC---CC-----CCcCeEEEec-C-CCCcccCCccCcHhhhCCCC
Q 025134 181 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASR---PG-----TARNYQLQMM-G-FPPKVLADRTQTIEQAGLAN 250 (257)
Q Consensus 181 ~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~---p~-----~~~~f~L~t~-~-fP~k~l~d~s~TL~eagL~n 250 (257)
...+.|-+=||+|--+.++++.+.||.+|..-|-... |- ...+|.+..+ . .=.-+|.|+++-|-|..+.-
T Consensus 17 ~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf~ 96 (108)
T 2v1y_A 17 PPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLFQ 96 (108)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBSS
T ss_pred CCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEeccccc
Confidence 3567888999999999999999999999987654431 11 1345666554 3 23345779999999988874
Q ss_pred ee
Q 025134 251 SV 252 (257)
Q Consensus 251 av 252 (257)
.+
T Consensus 97 pi 98 (108)
T 2v1y_A 97 PF 98 (108)
T ss_dssp SE
T ss_pred eE
Confidence 33
No 126
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=26.03 E-value=45 Score=30.14 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=36.3
Q ss_pred eEEEEEcCCCC----EEEEEeCCCCCHHHHHHHHHhhCCCC-CcCeEEEe
Q 025134 184 TSVQIRLADGT----RLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQM 228 (257)
Q Consensus 184 t~iqIRl~dG~----rlv~~fn~s~TI~dl~~fi~~~~p~~-~~~f~L~t 228 (257)
..++|.|+||+ ...+++..+.|++||.+-|.....-. ..-|-|..
T Consensus 8 ~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~ 57 (375)
T 2al6_A 8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRL 57 (375)
T ss_dssp EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEE
T ss_pred ceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEE
Confidence 45789999998 89999999999999999998864322 34588875
No 127
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=24.76 E-value=49 Score=24.90 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=23.6
Q ss_pred CceEEEEEeccceeecCCCCccC---CChhhHHHHHHHhcCC-CC
Q 025134 68 PIVHNIVFWANGFTVNDGPLRRL---DDPENASFLESIKKSE-CP 108 (257)
Q Consensus 68 ~~~~~l~lw~nGF~VddGp~R~y---~dP~n~~FL~~I~~G~-~P 108 (257)
...+.|+|||||=....|--... .-+.-.+||++|.+-- +|
T Consensus 12 ~~pk~I~v~rNGD~~~~g~~v~i~~~~~~sfe~lL~~lT~~v~l~ 56 (108)
T 2dnf_A 12 QEPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLR 56 (108)
T ss_dssp CCCEEEEECBTTCSSSCCEEEEECHHHHTCHHHHHHHHHHHCCCT
T ss_pred CcceEEEEEeCCCCCCCCEEEEECCccccCHHHHHHHHHHhhCCC
Confidence 44679999999944332211111 1124578898888753 44
No 128
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.52 E-value=1.6e+02 Score=21.53 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=32.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHhhC
Q 025134 179 ENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASR 217 (257)
Q Consensus 179 ~s~p~t~iqIRl~dG~rlv~~fn~s~TI~dl~~fi~~~~ 217 (257)
+++....|++=|||++|-++....-.|+.|-..=+...|
T Consensus 3 ~~k~~~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R 41 (86)
T 1wxm_A 3 SGSSGGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVR 41 (86)
T ss_dssp CCCCSSEEEEECSSSCEEEEECCSSCBSHHHHHHHHHTT
T ss_pred cccccceEEEECCCCCeEEEEecCCcCHHHHHHHHHHHc
Confidence 345566899999999999999999999998777666655
No 129
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=22.08 E-value=1.5e+02 Score=23.15 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=37.1
Q ss_pred EEEEEeCC----CCCHHHHHHHHHhhCCCCCcCeEEEecCCCCccc-----CC-ccCcHhhhCCCCeeE
Q 025134 195 RLIAHFNL----HHTISDIHSFIDASRPGTARNYQLQMMGFPPKVL-----AD-RTQTIEQAGLANSVV 253 (257)
Q Consensus 195 rlv~~fn~----s~TI~dl~~fi~~~~p~~~~~f~L~t~~fP~k~l-----~d-~s~TL~eagL~navi 253 (257)
|-+++++. ..|+++|.+.|.... ++...|.+.- .-=.|.| +| ...||.++|+.+..+
T Consensus 7 Rgvl~v~~~dl~~~TL~dLV~~l~~~~-gy~~eiSV~~-~~~~rLLyD~DfDDnl~k~L~dLgv~~gsf 73 (127)
T 3onh_A 7 RGVIKLSSDCLNKMKLSDFVVLIREKY-SYPQDISLLD-ASNQRLLFDYDFEDLNDRTLSEINLGNGSI 73 (127)
T ss_dssp EEEEEECHHHHHHCBHHHHHHHHHHHH-TCCSSEEEEE-TTTTEEEEETTBCTTTTSBTTTTTCCTTCE
T ss_pred EEEEEeCcccccccCHHHHHHHHHHhc-CCCCcEEEEe-cCCCCeEeCCCccccccCcHHHcCcCCCcE
Confidence 55667763 479999999986542 4556788772 1123343 22 368999999997433
No 130
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=21.90 E-value=1.1e+02 Score=20.20 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=22.0
Q ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHH
Q 025134 185 SVQIRLADGTRLIAHFNLHHTISDIHSFI 213 (257)
Q Consensus 185 ~iqIRl~dG~rlv~~fn~s~TI~dl~~fi 213 (257)
.|.|.++||+. ..|....|+.||..-+
T Consensus 2 ~i~i~~p~g~~--~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 2 EVMVFTPKGEI--KRLPQGATALDFAYSL 28 (73)
T ss_dssp CEEEECTTCCE--EEECTTCBHHHHHHHH
T ss_pred eEEEEcCCCCE--EEcCCCCcHHHHHHHH
Confidence 47899999974 5677889999998776
No 131
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=21.66 E-value=1.7e+02 Score=22.00 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=26.0
Q ss_pred CceEEEEEcCCC-------C-EEEEEeCC---CCCHHHHHHHHHhhCC
Q 025134 182 PSTSVQIRLADG-------T-RLIAHFNL---HHTISDIHSFIDASRP 218 (257)
Q Consensus 182 p~t~iqIRl~dG-------~-rlv~~fn~---s~TI~dl~~fi~~~~p 218 (257)
++.+|+||++.+ + ++.+.+.. ..||++|.+++....+
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~ 57 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL 57 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence 557899998765 2 34455552 2699999999987653
No 132
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=20.87 E-value=2.5e+02 Score=20.39 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=43.3
Q ss_pred ceEEEEEcCCCCE-EEEEeCC-CCCHHHHHHHHHhhCCCCCcCeEEEec-CCCCcccCCccCcHhhhCCCC-eeEEee
Q 025134 183 STSVQIRLADGTR-LIAHFNL-HHTISDIHSFIDASRPGTARNYQLQMM-GFPPKVLADRTQTIEQAGLAN-SVVIQK 256 (257)
Q Consensus 183 ~t~iqIRl~dG~r-lv~~fn~-s~TI~dl~~fi~~~~p~~~~~f~L~t~-~fP~k~l~d~s~TL~eagL~n-avivqk 256 (257)
...|..|+-+... -.+.|+- .-+|.||...|..........|.|... +=-..++.|++.-|- .| +|||.|
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~lIp----rnssViVrR 79 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNALIP----KNSSVIVRR 79 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTCEEE----TTCCEEEEE
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCceEEe----cCCEEEEEe
Confidence 3567777776654 3667774 468999999998765444567888863 223345666543321 24 555655
Done!