BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025135
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HS6|A Chain A, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HS6|B Chain B, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HSA|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|2HSA|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|3HGS|A Chain A, Crystal Structure Of Tomato Opr3 In Complex With Phb
pdb|3HGS|B Chain B, Crystal Structure Of Tomato Opr3 In Complex With Phb
Length = 402
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 187/257 (72%), Positives = 224/257 (87%), Gaps = 1/257 (0%)
Query: 1 MPDGSYATYPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI 60
MPDG++ YP P+A+ T EI +V++ YR++ALNAI+AGFDGIEIHGAHGYLIDQFLKDGI
Sbjct: 147 MPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGI 206
Query: 61 NDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVI 120
NDRTDEYGGS+ NRC+F+ Q+V+ V+ AIGADRVGVR+SPAIDHLDA DS+PL LGLAV+
Sbjct: 207 NDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVV 266
Query: 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG 180
+ LNK+Q+ G+KL YLHVTQPRY AYGQTE+GR G+E+EEA+L+RT R +YQGTFICSG
Sbjct: 267 ERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSG 326
Query: 181 GFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTD 240
G+TRELGI+A+A+ ADLV+YGRLFISNPDLV+R KLNAPLNKY RKTFYT DP+VGYTD
Sbjct: 327 GYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKTFYTQDPVVGYTD 386
Query: 241 YPFLSKANKGQATLSRL 257
YPFL + N LSRL
Sbjct: 387 YPFL-QGNGSNGPLSRL 402
>pdb|2HS8|A Chain A, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
pdb|2HS8|B Chain B, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
Length = 402
Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust.
Identities = 186/257 (72%), Positives = 224/257 (87%), Gaps = 1/257 (0%)
Query: 1 MPDGSYATYPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI 60
MPDG++ YP P+A+ T EI +V++ YR++ALNAI+AGFDGIEIHGAHGYLIDQFLKDGI
Sbjct: 147 MPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGI 206
Query: 61 NDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVI 120
NDRTDEYGGS+ NRC+F+ Q+V+ V+ AIGADRVGVR+SPAIDHLDA DS+PL LGLAV+
Sbjct: 207 NDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVV 266
Query: 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG 180
+ LNK+Q+ G+KL YLHVTQPRY AYGQTE+GR G+E+EEA+L+RT R +YQGTFICSG
Sbjct: 267 ERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSG 326
Query: 181 GFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTD 240
G+TRELGI+A+A+ ADLV+YGRLFISNPDLV+R KLNAPLNK+ RKTFYT DP+VGYTD
Sbjct: 327 GYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKFNRKTFYTQDPVVGYTD 386
Query: 241 YPFLSKANKGQATLSRL 257
YPFL + N LSRL
Sbjct: 387 YPFL-QGNGSNGPLSRL 402
>pdb|3HGO|A Chain A, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
pdb|3HGO|B Chain B, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
Length = 402
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/257 (72%), Positives = 224/257 (87%), Gaps = 1/257 (0%)
Query: 1 MPDGSYATYPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI 60
MPDG++ YP P+A+ T EI +V++ YR++ALNAI+AGFDGIEIHGAHGYLIDQFLKDGI
Sbjct: 147 MPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGI 206
Query: 61 NDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVI 120
NDRTDEYGGS+ NRC+F+ Q+V+ V+ AIGADRVGVR+SPAID+LDA DS+PL LGLAV+
Sbjct: 207 NDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDYLDAMDSNPLSLGLAVV 266
Query: 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG 180
+ LNK+Q+ G+KL YLHVTQPRY AYGQTE+GR G+E+EEA+L+RT R +YQGTFICSG
Sbjct: 267 ERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSG 326
Query: 181 GFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTD 240
G+TRELGI+A+A+ ADLV+YGRLFISNPDLV+R KLNAPLNKY RKTFYT DP+VGYTD
Sbjct: 327 GYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKTFYTQDPVVGYTD 386
Query: 241 YPFLSKANKGQATLSRL 257
YPFL + N LSRL
Sbjct: 387 YPFL-QGNGSNGPLSRL 402
>pdb|1Q45|A Chain A, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|1Q45|B Chain B, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|2G5W|A Chain A, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2G5W|B Chain B, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2Q3O|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
pdb|2Q3O|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
Length = 391
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 175/245 (71%), Positives = 209/245 (85%)
Query: 1 MPDGSYATYPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI 60
+PDGS+ YP P+AL+ SEIP V++ Y +ALNAI+AGFDGIEIHGAHGYLIDQFLKDGI
Sbjct: 142 LPDGSHVKYPKPRALEASEIPRVVEDYCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGI 201
Query: 61 NDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVI 120
NDRTD+YGGSI NRCRFL Q+V V+ AIGA +VGVR+SPAIDHLDATDSDPL LGLAV+
Sbjct: 202 NDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLSLGLAVV 261
Query: 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG 180
LNKLQ G+KL YLHVTQPRY AYGQTESGR G+++EEA+L+++ R +Y GTF+ SG
Sbjct: 262 GMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSG 321
Query: 181 GFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTD 240
GF +ELG+QA+ + ADLV+YGRLFI+NPDLV RFK++ LNKY RKTFYT DP+VGYTD
Sbjct: 322 GFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFYTQDPVVGYTD 381
Query: 241 YPFLS 245
YPFL+
Sbjct: 382 YPFLA 386
>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICP|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICQ|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICQ|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICS|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|1ICS|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|3HGR|A Chain A, Crystal Structure Of Tomato Opr1 In Complex With Phb
pdb|3HGR|B Chain B, Crystal Structure Of Tomato Opr1 In Complex With Phb
Length = 376
Score = 273 bits (697), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 16/239 (6%)
Query: 7 ATYPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDE 66
A + P+ L T EIP++++++R AA NAI+AGFDG+EIHGAHGYLIDQF+KD +NDR+D+
Sbjct: 149 AHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDK 208
Query: 67 YGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKL 126
YGGS+ENRCRF +++V V IG+DRVG+R+SP + +A D++P LGL +++ LNK
Sbjct: 209 YGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKY 268
Query: 127 QIDQGAKLTYLHVTQPRY-TAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRE 185
L Y HV +PR TA+ + E + L R++Y+GTFI +GG+ RE
Sbjct: 269 D------LAYCHVVEPRMKTAWEKIEC---------TESLVPMRKAYKGTFIVAGGYDRE 313
Query: 186 LGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
G +AL ED ADLVAYGRLFISNPDL RF+LNAPLNKY R TFYT DPIVGYTDYPFL
Sbjct: 314 DGNRALIEDRADLVAYGRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFL 372
>pdb|1VJI|A Chain A, Gene Product Of At1g76680 From Arabidopsis Thaliana
pdb|2Q3R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g76680 From Arabidopsis Thaliana
Length = 372
Score = 248 bits (634), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 14/238 (5%)
Query: 7 ATYPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDE 66
A + P+ L EIP +++ +R AA NA++AGFDG+EIHGA+GYLIDQF+KD +NDRTDE
Sbjct: 145 ALFTPPRRLGIEEIPGIVNDFRLAARNAMEAGFDGVEIHGANGYLIDQFMKDTVNDRTDE 204
Query: 67 YGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKL 126
YGGS++NRC+F +++V V IG DRVG+R+SP D++++ D++P LGL + + LNK
Sbjct: 205 YGGSLQNRCKFPLEIVDAVAKEIGPDRVGIRLSPFADYMESGDTNPGALGLYMAESLNKY 264
Query: 127 QIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTREL 186
I Y HV + R G+ + L R++++GTFI +GGFTRE
Sbjct: 265 GI------LYCHVIEARMKTMGEVHAC--------PHTLMPMRKAFKGTFISAGGFTRED 310
Query: 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
G +A+++ DLVAYGR F++NPDL RF+++APLNKY R TFYT DP+VGYTDYPFL
Sbjct: 311 GNEAVSKGRTDLVAYGRWFLANPDLPKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFL 368
>pdb|3GKA|A Chain A, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
pdb|3GKA|B Chain B, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
Length = 361
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 136/239 (56%), Gaps = 23/239 (9%)
Query: 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYG 68
Y P+AL+ EIP V+ +R+ A NA AGFDG+E+HGA+GYL+DQFL+D N RTD YG
Sbjct: 145 YVTPRALELDEIPGVVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYG 204
Query: 69 GSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQI 128
GSIENR R L+++V I A RVGV ++P D DSDP V + L + +I
Sbjct: 205 GSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRI 264
Query: 129 DQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGI 188
+L + ++G G+ QL + ++ G FI + FT +
Sbjct: 265 ------AFLFARE----SFGGDAIGQ--------QL----KAAFGGPFIVNENFTLDSAQ 302
Query: 189 QALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSKA 247
AL AD VA+G+LFI+NPDL RFKLNAPLN+ TFY VGYTDYP L A
Sbjct: 303 AALDAGQADAVAWGKLFIANPDLPRRFKLNAPLNEPNAATFYAQGE-VGYTDYPALESA 360
>pdb|2GOU|A Chain A, Structure Of Wild Type, Oxidized Sye1, An Oye Homologue
From S. Oneidensis
pdb|2GQ8|A Chain A, Structure Of Sye1, An Oye Homologue From S. Ondeidensis,
In Complex With P-Hydroxyacetophenone
pdb|2GQ9|A Chain A, Structure Of Sye1, An Oye Homologue From S. Oneidensis, In
Complex With P-Hydroxybenzaldehyde
pdb|2GQA|A Chain A, Structure Of Nadh-Reduced Sye1, An Oye Homologue From S.
Oneidensis
Length = 365
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 135/231 (58%), Gaps = 17/231 (7%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+A+ ++I +VI YRQAALNA++AGFDGIE+H A+GYLI+QF+ N+R+DEYGGS+
Sbjct: 148 PRAMTKADIAQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSL 207
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQG 131
ENR RFL ++V ++ AIGA+RVGVR++P D+DP+ A LNK +I
Sbjct: 208 ENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRI--- 264
Query: 132 AKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQAL 191
YLH+ + + D R R +YQG I +G + E QA+
Sbjct: 265 ---VYLHIAEVDWD----------DAPDTPVSFKRALREAYQGVLIYAGRYNAEKAEQAI 311
Query: 192 AEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYP 242
+ AD++ +GR FI+NPDL R + PL ++V T + G TDYP
Sbjct: 312 NDGLADMIGFGRPFIANPDLPERLRHGYPLAEHVPATLFGGGE-KGLTDYP 361
>pdb|2R14|A Chain A, Structure Of Morphinone Reductase In Complex With
Tetrahydronad
Length = 377
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 135/248 (54%), Gaps = 18/248 (7%)
Query: 3 DGSYATYPN--PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI 60
DG+ +P P+AL+T EIP +++ YRQAA A +AGFD +E+H A+ L +QFL G
Sbjct: 142 DGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGT 201
Query: 61 NDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVI 120
N RTD+YGGSIENR RF +++V V G +RVG+R++P ++ TD +P + +
Sbjct: 202 NRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLA 261
Query: 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG 180
L++ L YLH +P + G R+ ++G I G
Sbjct: 262 GELDR------RGLAYLHFNEPDWIG---------GDITYPEGFREQMRQRFKGGLIYCG 306
Query: 181 GFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTD 240
+ L ++ AD VA+GR FI+NPDL RF+L A LN+ TFY VGYTD
Sbjct: 307 NYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFYGGAE-VGYTD 365
Query: 241 YPFLSKAN 248
YPFL +
Sbjct: 366 YPFLDNGH 373
>pdb|3GX9|A Chain A, Structure Of Morphinone Reductase N189a Mutant In Complex
With Tetrahydronad
Length = 377
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 134/248 (54%), Gaps = 18/248 (7%)
Query: 3 DGSYATYPN--PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI 60
DG+ +P P+AL+T EIP +++ YRQAA A +AGFD +E+H A L +QFL G
Sbjct: 142 DGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKRAGFDMVEVHAAAACLPNQFLATGT 201
Query: 61 NDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVI 120
N RTD+YGGSIENR RF +++V V G +RVG+R++P ++ TD +P + +
Sbjct: 202 NRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLA 261
Query: 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG 180
L++ L YLH +P + G R+ ++G I G
Sbjct: 262 GELDR------RGLAYLHFNEPDWIG---------GDITYPEGFREQMRQRFKGGLIYCG 306
Query: 181 GFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTD 240
+ L ++ AD VA+GR FI+NPDL RF+L A LN+ TFY VGYTD
Sbjct: 307 NYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFYGGAE-VGYTD 365
Query: 241 YPFLSKAN 248
YPFL +
Sbjct: 366 YPFLDNGH 373
>pdb|1GWJ|A Chain A, Morphinone Reductase
Length = 377
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 18/248 (7%)
Query: 3 DGSYATYPN--PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI 60
DG+ +P P+AL+T IP +++ YRQAA A +AGFD +E+H A+ L +QFL G
Sbjct: 142 DGTAGLHPTSTPRALETDGIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGT 201
Query: 61 NDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVI 120
N RTD+YGGSIENR RF +++V V G +RVG+R++P ++ TD +P + +
Sbjct: 202 NRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLA 261
Query: 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG 180
L++ L YLH +P + G R+ ++G I G
Sbjct: 262 GELDR------RGLAYLHFNEPDWIG---------GDITYPEGFREQMRQRFKGGLIYCG 306
Query: 181 GFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTD 240
+ L ++ AD VA+GR FI+NPDL RF+L A LN+ TFY VGYTD
Sbjct: 307 NYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFYGGAE-VGYTD 365
Query: 241 YPFLSKAN 248
YPFL +
Sbjct: 366 YPFLDNGH 373
>pdb|4AB4|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AB4|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
Length = 362
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 130/239 (54%), Gaps = 23/239 (9%)
Query: 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYG 68
YP P+AL+T EI ++++ YR A NA AGFDG+EIHGA+GYL+DQFL+ N RTD YG
Sbjct: 137 YPTPRALETEEINDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYG 196
Query: 69 GSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQI 128
GS+ENR R L+++ I GA RVGV ++P D D D+D V + L K I
Sbjct: 197 GSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGI 256
Query: 129 DQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGI 188
+ + E+ +D L+ + ++ G +I + F +
Sbjct: 257 --------------AFICSREREA-----DDSIGPLI---KEAFGGPYIVNERFDKASAN 294
Query: 189 QALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSKA 247
ALA AD VA+G FI+NPDL R +APLN+ +TFY P VGY DYP L A
Sbjct: 295 AALASGKADAVAFGVPFIANPDLPARLAADAPLNEAHPETFYGKGP-VGYIDYPRLKLA 352
>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone
Dismutation
Length = 400
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 11 NPQ-ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 69
NPQ +L EI + I +Y QAA N+I AG DG+EIH A+GYL++QFL N RTDEYGG
Sbjct: 157 NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGG 216
Query: 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSP--AIDHLDATDSDPLGLGLAVIQGLNKLQ 127
SIENR RF +++V ++ AIG ++VG+R+SP + + + A + G + +
Sbjct: 217 SIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKR 276
Query: 128 IDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT-REL 186
G +L ++H+ +PR T TE + W+ G I +G F
Sbjct: 277 AKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWK----GPVIRAGNFALHPE 332
Query: 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSK 246
++ +D L+ YGR FISNPDLV R + PLNKY R TFY GY DYP +
Sbjct: 333 VVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYPTYEE 391
Query: 247 ANK 249
A K
Sbjct: 392 ALK 394
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 131/234 (55%), Gaps = 19/234 (8%)
Query: 13 QALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIE 72
+AL+ EIP ++D Y +AA +A++AGFDG++IH A+GYLID+F++D N R DEYGG++E
Sbjct: 140 RALRLDEIPRLLDDYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVE 199
Query: 73 NRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGA 132
NR R L + VI IG +R VR+SP + DS P + + + L+ L I
Sbjct: 200 NRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDI---- 255
Query: 133 KLTYLHVTQPRYTAYGQTESGRPGT--EDEEAQLLRTWRRSYQGTFICSGGFTRELGIQA 190
+L G E GT + ++ +L R+ ++ + + +T E A
Sbjct: 256 --AFL----------GMREGAVDGTFGKTDQPKLSPEIRKVFKPPLVLNQDYTFETAQAA 303
Query: 191 LAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
L AD +++GR FI NPDL RF APL K V +T+YT P GYTDYP L
Sbjct: 304 LDSGVADAISFGRPFIGNPDLPRRFFEKAPLTKDVIETWYTQTP-KGYTDYPLL 356
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 11 NPQ-ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 69
NPQ +L EI + I +Y QAA N+I AG DG+EI+ AHGYL++QFL N RTDEYGG
Sbjct: 156 NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEINSAHGYLLNQFLDPHSNTRTDEYGG 215
Query: 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSP--AIDHLDATDSDPLGLGLAVIQGLNKLQ 127
SIENR RF +++V ++ AIG ++VG+R+SP + + + A + G + +
Sbjct: 216 SIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKR 275
Query: 128 IDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT-REL 186
G +L ++H+ +PR T TE + W+ G I +G F
Sbjct: 276 AKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWK----GPVIRAGNFALHPE 331
Query: 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSK 246
++ +D L+ YGR FISNPDLV R + PLNKY R TFY GY DYP +
Sbjct: 332 VVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYPTYEE 390
Query: 247 ANK 249
A K
Sbjct: 391 ALK 393
>pdb|3TXZ|A Chain A, Oye1-W116q Complexed With R-Carvone
Length = 400
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 11 NPQ-ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 69
NPQ +L EI + I +Y QAA N+I AG DG+EIH A+GYL++QFL N RTDEYGG
Sbjct: 157 NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGG 216
Query: 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSP--AIDHLDATDSDPLGLGLAVIQGLNKLQ 127
SIENR RF +++V ++ AIG ++VG+R+SP + + + A + G + +
Sbjct: 217 SIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKR 276
Query: 128 IDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT-REL 186
G +L ++H+ +PR T TE + W+ G I +G F
Sbjct: 277 AKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWK----GPVIRAGNFALHPE 332
Query: 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSK 246
++ +D L+ YGR FISNPDLV R + PLNKY R TFY GY DYP +
Sbjct: 333 VVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYPTYEE 391
Query: 247 ANK 249
A K
Sbjct: 392 ALK 394
>pdb|4GE8|A Chain A, Oye1-W116i Complexed With (S)-Carvone
Length = 400
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 11 NPQ-ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 69
NPQ +L EI + I +Y QAA N+I AG DG+EIH A+GYL++QFL N RTDEYGG
Sbjct: 157 NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGG 216
Query: 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSP--AIDHLDATDSDPLGLGLAVIQGLNKLQ 127
SIENR RF +++V ++ AIG ++VG+R+SP + + + A + G + +
Sbjct: 217 SIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKR 276
Query: 128 IDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT-REL 186
G +L ++H+ +PR T TE + W+ G I +G F
Sbjct: 277 AKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWK----GPVIRAGNFALHPE 332
Query: 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSK 246
++ +D L+ YGR FISNPDLV R + PLNKY R TFY GY DYP +
Sbjct: 333 VVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYPTYEE 391
Query: 247 ANK 249
A K
Sbjct: 392 ALK 394
>pdb|1OYA|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYB|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYC|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|3TX9|A Chain A, Oye1 Complexed With 2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 400
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 11 NPQ-ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 69
NPQ +L EI + I +Y QAA N+I AG DG+EIH A+GYL++QFL N RTDEYGG
Sbjct: 157 NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGG 216
Query: 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSP--AIDHLDATDSDPLGLGLAVIQGLNKLQ 127
SIENR RF +++V ++ AIG ++VG+R+SP + + + A + G + +
Sbjct: 217 SIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKR 276
Query: 128 IDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT-REL 186
G +L ++H+ +PR T TE + W+ G I +G F
Sbjct: 277 AKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWK----GPVIRAGNFALHPE 332
Query: 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSK 246
++ +D L+ YGR FISNPDLV R + PLNKY R TFY GY DYP +
Sbjct: 333 VVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYPTYEE 391
Query: 247 ANK 249
A K
Sbjct: 392 ALK 394
>pdb|3RND|A Chain A, W116i-Oye1 Complexed With
2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 399
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 11 NPQ-ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 69
NPQ +L EI + I +Y QAA N+I AG DG+EIH A+GYL++QFL N RTDEYGG
Sbjct: 156 NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGG 215
Query: 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSP--AIDHLDATDSDPLGLGLAVIQGLNKLQ 127
SIENR RF +++V ++ AIG ++VG+R+SP + + + A + G + +
Sbjct: 216 SIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKR 275
Query: 128 IDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT-REL 186
G +L ++H+ +PR T TE + W+ G I +G F
Sbjct: 276 AKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWK----GPVIRAGNFALHPE 331
Query: 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSK 246
++ +D L+ YGR FISNPDLV R + PLNKY R TFY GY DYP +
Sbjct: 332 VVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYPTYEE 390
Query: 247 ANK 249
A K
Sbjct: 391 ALK 393
>pdb|4GWE|A Chain A, W116l-Oye1 Complexed With (R)-Carvone
pdb|4GXM|A Chain A, Oye1-W116l In Complex With Aromatic Product Of R-Carvone
Dismutation
Length = 400
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 11 NPQ-ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 69
NPQ +L EI + I +Y QAA N+I AG DG+EIH A+GYL++QFL N RTDEYGG
Sbjct: 157 NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGG 216
Query: 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSP--AIDHLDATDSDPLGLGLAVIQGLNKLQ 127
SIENR RF +++V ++ AIG ++VG+R+SP + + + A + G + +
Sbjct: 217 SIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKR 276
Query: 128 IDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT-REL 186
G +L ++H+ +PR T TE + W+ G I +G F
Sbjct: 277 AKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWK----GPVIRAGNFALHPE 332
Query: 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSK 246
++ +D L+ YGR FISNPDLV R + PLNKY R TFY GY DYP +
Sbjct: 333 VVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYPTYEE 391
Query: 247 ANK 249
A K
Sbjct: 392 ALK 394
>pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Complexed With Para-Hydroxy Benzaldehyde
Length = 399
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 11 NPQ-ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 69
NPQ +L EI + I +Y QAA N+I AG DG+EIH A+GYL++QFL N RTDEYGG
Sbjct: 156 NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGG 215
Query: 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSP--AIDHLDATDSDPLGLGLAVIQGLNKLQ 127
SIENR RF +++V ++ AIG ++VG+R+SP + + + A + G + +
Sbjct: 216 SIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKR 275
Query: 128 IDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT-REL 186
G +L ++H+ +PR T TE + W+ G I +G F
Sbjct: 276 AKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWK----GPVIRAGNFALHPE 331
Query: 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSK 246
++ +D L+ YGR FISNPDLV R + PLNKY R TFY GY DYP +
Sbjct: 332 VVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYPTYEE 390
Query: 247 ANK 249
A K
Sbjct: 391 ALK 393
>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n
Length = 399
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 11 NPQ-ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 69
NPQ +L EI + I +Y QAA N+I AG DG+EI+ A+GYL++QFL N RTDEYGG
Sbjct: 156 NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEINSANGYLLNQFLDPHSNTRTDEYGG 215
Query: 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSP--AIDHLDATDSDPLGLGLAVIQGLNKLQ 127
SIENR RF +++V ++ AIG ++VG+R+SP + + + A + G + +
Sbjct: 216 SIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKR 275
Query: 128 IDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT-REL 186
G +L ++H+ +PR T TE + W+ G I +G F
Sbjct: 276 AKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWK----GPVIRAGNFALHPE 331
Query: 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSK 246
++ +D L+ YGR FISNPDLV R + PLNKY R TFY GY DYP +
Sbjct: 332 VVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYPTYEE 390
Query: 247 ANK 249
A K
Sbjct: 391 ALK 393
>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y
Mutant And Complexed With Picric Acid
Length = 364
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H AHGYL+ QFL N RTD+YGGS+
Sbjct: 148 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV 207
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 208 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 265
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 266 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 310
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN ++FY GYTDYP L
Sbjct: 311 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYPSL 364
>pdb|3P67|A Chain A, T26s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 373
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H AHGYL+ QFL N RTD+YGGS+
Sbjct: 149 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV 208
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 209 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 266
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 267 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 311
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN ++FY GYTDYP L
Sbjct: 312 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYPSL 365
>pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexes
pdb|1H60|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Progesterone
pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Prednisone
pdb|1H62|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With 1,4-Androstadien-3,17-Dione
pdb|1H63|A Chain A, Structure Of The Reduced Pentaerythritol Tetranitrate
Reductase
pdb|1GVO|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4 Dinitrophenol
pdb|1GVQ|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Cyclohexanone
pdb|1GVR|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4,6 Trinitrotoluene
pdb|1GVS|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Picric Acid
pdb|1H51|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase And
Complexes
pdb|1VYR|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase
Complexed With Picric Acid
pdb|2ABA|A Chain A, Structure Of Reduced Petn Reductase In Complex With
Progesterone
pdb|3F03|K Chain K, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1-Nitrocyclohexene
pdb|3KFT|A Chain A, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
pdb|3KFT|B Chain B, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
Length = 364
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H AHGYL+ QFL N RTD+YGGS+
Sbjct: 148 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV 207
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 208 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 265
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 266 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 310
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN ++FY GYTDYP L
Sbjct: 311 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYPSL 364
>pdb|1VYP|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102f
Mutant And Complexed With Picric Acid
Length = 364
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H AHGYL+ QFL N RTD+YGGS+
Sbjct: 148 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV 207
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 208 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 265
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 266 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 310
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN ++FY GYTDYP L
Sbjct: 311 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYPSL 364
>pdb|3P7Y|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure With Bound
(E)-1-(2'-Hydroxyphenyl)-2-Nitroethene
pdb|3P80|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing Bound
(E)-1-(3'-Hydroxyphenyl)-2-Nitroethene
pdb|3P81|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing A Bound
(E)-1-(4'-Hydroxyphenyl)-2-Nitroethene Molecule
Length = 365
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H AHGYL+ QFL N RTD+YGGS+
Sbjct: 149 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV 208
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 209 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 266
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 267 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 311
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN ++FY GYTDYP L
Sbjct: 312 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYPSL 365
>pdb|3P62|A Chain A, Wild-Type Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal 8-Histidine Tag
Length = 373
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H AHGYL+ QFL N RTD+YGGS+
Sbjct: 149 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV 208
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 209 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 266
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 267 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 311
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN ++FY GYTDYP L
Sbjct: 312 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYPSL 365
>pdb|2ABB|A Chain A, Structure Of Petn Reductase Y186f In Complex With Cyanide
Length = 364
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H AHG+L+ QFL N RTD+YGGS+
Sbjct: 148 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGFLLHQFLSPSSNQRTDQYGGSV 207
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 208 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 265
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 266 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 310
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN ++FY GYTDYP L
Sbjct: 311 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYPSL 364
>pdb|3P8I|A Chain A, Y351f Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H AHGYL+ QFL N RTD+YGGS+
Sbjct: 149 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV 208
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 209 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 266
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 267 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 311
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN ++F+ GYTDYP L
Sbjct: 312 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFFGGG-AEGYTDYPSL 365
>pdb|3P8J|A Chain A, Y351s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 128/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H AHGYL+ QFL N RTD+YGGS+
Sbjct: 149 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV 208
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 209 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 266
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 267 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 311
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN R ++ GYTDYP L
Sbjct: 312 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQ-RPESFSGGGAEGYTDYPSL 365
>pdb|3P84|A Chain A, Y351a Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 127/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H AHGYL+ QFL N RTD+YGGS+
Sbjct: 149 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV 208
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 209 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 266
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 267 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 311
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN R + GYTDYP L
Sbjct: 312 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQ-RPESFAGGGAEGYTDYPSL 365
>pdb|3P74|A Chain A, H181n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal His8-Tag
Length = 373
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E++ AHGYL+ QFL N RTD+YGGS+
Sbjct: 149 PRALELDEIPGIVNDFRQAVANAREAGFDLVELNSAHGYLLHQFLSPSSNQRTDQYGGSV 208
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 209 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 266
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 267 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 311
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN ++FY GYTDYP L
Sbjct: 312 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYPSL 365
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+AL+ EIP +++ +RQA NA +AGFD +E+H A+GYL+ QFL N RTD+YGGS+
Sbjct: 149 PRALELDEIPGIVNDFRQAVANAREAGFDLVELHSANGYLLHQFLSPSSNQRTDQYGGSV 208
Query: 72 ENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP--LGLGLAVIQGLNKLQID 129
ENR R ++++V V ADR+G+R+SP I D+ P L +I+ L K I
Sbjct: 209 ENRARLVLEVVDAVCNEWSADRIGIRVSP-IGTFQNVDNGPNEEADALYLIEELAKRGI- 266
Query: 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189
YLH+++ G+P +E + R + G I +G +T E
Sbjct: 267 -----AYLHMSETDLAG------GKPYSE----AFRQKVRERFHGVIIGAGAYTAEKAED 311
Query: 190 ALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244
+ + D VA+GR +I+NPDLV R + A LN ++FY GYTDYP L
Sbjct: 312 LIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYPSL 365
>pdb|4DF2|A Chain A, P. Stipitis Oye2.6 Complexed With P-Chlorophenol
Length = 407
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 22/259 (8%)
Query: 11 NP-QALQTSEIPEVI-DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYG 68
NP +AL T E+ +++ + Y AA A+ AGFD IE+H AHGYL+DQFL+ N RTDEYG
Sbjct: 152 NPVRALTTQEVKDLVYETYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYG 211
Query: 69 GSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID------HLDATDSDPLGLGLAVIQG 122
GSIENR R +++L+ + +GAD++G+R+SP H D PL ++
Sbjct: 212 GSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTV--HPLTTFSYLVHE 269
Query: 123 LNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182
L + + D+G + Y+ V +PR + G + + + + W+ G + +G +
Sbjct: 270 LQQ-RADKGQGIAYISVVEPRVS--GNVDVSEEDQAGDNEFVSKIWK----GVILKAGNY 322
Query: 183 TREL-GIQALAEDGAD---LVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGY 238
+ + + L ED AD LV + R F SNP+LV + + L Y R TFY+ D GY
Sbjct: 323 SYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFYS-DNNYGY 381
Query: 239 TDYPFLSKANKGQATLSRL 257
+ S+ + + R+
Sbjct: 382 NTFSMDSEEVDKELEIKRV 400
>pdb|3TJL|A Chain A, Crystal Structure Of A Novel Oye From The
Xylose-Fermenting Fungus P. Stipitis
pdb|3UPW|A Chain A, Pichia Stipitis Oye2.6 Complexed With Nicotinamide
Length = 407
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 22/259 (8%)
Query: 11 NP-QALQTSEIPEVI-DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYG 68
NP +AL T E+ +++ + Y AA A+ AGFD IE+H AHGYL+DQFL+ N RTDEYG
Sbjct: 152 NPVRALTTQEVKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYG 211
Query: 69 GSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID------HLDATDSDPLGLGLAVIQG 122
GSIENR R +++L+ + +GAD++G+R+SP H D PL ++
Sbjct: 212 GSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTV--HPLTTFSYLVHE 269
Query: 123 LNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182
L + + D+G + Y+ V +PR + G + + + + W+ G + +G +
Sbjct: 270 LQQ-RADKGQGIAYISVVEPRVS--GNVDVSEEDQAGDNEFVSKIWK----GVILKAGNY 322
Query: 183 TREL-GIQALAEDGAD---LVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGY 238
+ + + L ED AD LV + R F SNP+LV + + L Y R TFY+ D GY
Sbjct: 323 SYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFYS-DNNYGY 381
Query: 239 TDYPFLSKANKGQATLSRL 257
+ S+ + + R+
Sbjct: 382 NTFSMDSEEVDKELEIKRV 400
>pdb|3ATY|A Chain A, Crystal Structure Of Tcoye
pdb|3ATY|B Chain B, Crystal Structure Of Tcoye
pdb|3ATZ|A Chain A, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|B Chain B, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|C Chain C, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|D Chain D, Crystal Structure Of Tcoye With Phba
Length = 379
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 129/248 (52%), Gaps = 25/248 (10%)
Query: 4 GSYATYPNPQALQTSEIPE-VIDQYRQAALNAI-QAGFDGIEIHGAHGYLIDQFLKDGIN 61
G TY P+ L E+ + +I + + A NAI +AGFDG+EIHGA+GYL+D F ++ N
Sbjct: 152 GEKETYGVPEELTDDEVRDGIIPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSN 211
Query: 62 DR-TDEYGGS-IENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAV 119
R + Y G+ I+ RC+ + + + V A+G+DRVG+R+SP DS+P L +
Sbjct: 212 KRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHL 271
Query: 120 IQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRR-SYQGTFIC 178
+ + L L YLH R +++ + W R SY G I
Sbjct: 272 CKKIEPLS------LAYLHYL-------------RGDMVNQQIGDVVAWVRGSYSGVKIS 312
Query: 179 SGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGY 238
+ + E Q + E D VA+G FI+NPDLV R + N PLN+ +T+YT VGY
Sbjct: 313 NLRYDFEEADQQIREGKVDAVAFGAKFIANPDLVERAQQNWPLNEPRPETYYTRT-AVGY 371
Query: 239 TDYPFLSK 246
DYP +K
Sbjct: 372 NDYPTYNK 379
>pdb|3KRU|A Chain A, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|B Chain B, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|C Chain C, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|D Chain D, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
Length = 343
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 21/209 (10%)
Query: 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYG 68
Y P+ L EI ++ + +AA A AG+D +EIH AHGYLI +FL N R DEYG
Sbjct: 127 YKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYG 186
Query: 69 GSIENRCRFLMQLVREVIVAIGADR-VGVRMSPAIDHLD-ATDSDPLGLGLAVIQ-GLNK 125
SIENR RFL++++ EV ++ + VR+S A D+++ + D + + +I+ ++
Sbjct: 187 NSIENRARFLIEVIDEVRKNWPENKPIFVRVS-ADDYMEGGINIDMMVEYINMIKDKVDL 245
Query: 126 LQIDQGAKLTYLHVTQPRY-TAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTR 184
+ + G L P Y Y +T R + L+ T+
Sbjct: 246 IDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLIT----------------TQ 289
Query: 185 ELGIQALAEDGADLVAYGRLFISNPDLVL 213
EL + L+ + ADLVA GR + NP VL
Sbjct: 290 ELAEEILSNERADLVALGRELLRNPYWVL 318
>pdb|3KRZ|A Chain A, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|B Chain B, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|C Chain C, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|D Chain D, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
Length = 337
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 21/209 (10%)
Query: 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYG 68
Y P+ L EI ++ + +AA A AG+D +EIH AHGYLI +FL N R DEYG
Sbjct: 127 YKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYG 186
Query: 69 GSIENRCRFLMQLVREVIVAIGADR-VGVRMSPAIDHLD-ATDSDPLGLGLAVIQ-GLNK 125
SIENR RFL++++ EV ++ + VR+S A D+++ + D + + +I+ ++
Sbjct: 187 NSIENRARFLIEVIDEVRKNWPENKPIFVRVS-ADDYMEGGINIDMMVEYINMIKDKVDL 245
Query: 126 LQIDQGAKLTYLHVTQPRY-TAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTR 184
+ + G L P Y Y +T R + L+ T+
Sbjct: 246 IDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLIT----------------TQ 289
Query: 185 ELGIQALAEDGADLVAYGRLFISNPDLVL 213
EL + L+ + ADLVA GR + NP VL
Sbjct: 290 ELAEEILSNERADLVALGRELLRNPYWVL 318
>pdb|1Z41|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z41|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z42|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z42|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z44|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z44|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z48|A Chain A, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
pdb|1Z48|B Chain B, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
Length = 338
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 11 NPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGS 70
P ++ E + +++QAA A +AGFD IEIH AHGYLI +FL N RTDEYGGS
Sbjct: 130 TPVEXSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGS 189
Query: 71 IENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQ 130
ENR RFL +++ EV V P + A+D GL +A G K +Q
Sbjct: 190 PENRYRFLREIIDEV--------KQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWXKEQ 241
Query: 131 GAKL 134
G L
Sbjct: 242 GVDL 245
>pdb|3GR7|A Chain A, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR7|B Chain B, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR8|A Chain A, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
pdb|3GR8|B Chain B, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
Length = 340
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 99/205 (48%), Gaps = 24/205 (11%)
Query: 10 PNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 69
P P+ + ++I E + ++ A A +AGFD IEIH AHGYLI++FL N R DEYGG
Sbjct: 129 PTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGG 188
Query: 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLD---ATDSDPLGLGLAVIQGLNKL 126
S ENR RFL +++ + + + + VR+S + H D A D P + QG++ +
Sbjct: 189 SPENRYRFLGEVI-DAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKE-QGVDLV 246
Query: 127 QIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGT--FICSGGFTR 184
+ GA + R Y PG + A+L+R G I SG
Sbjct: 247 DVSSGA------IVPARMNVY-------PGYQVPFAELIRREADIPTGAVGLITSGWQAE 293
Query: 185 ELGIQALAEDGADLVAYGRLFISNP 209
E+ L ADLV GR + NP
Sbjct: 294 EI----LQNGRADLVFLGRELLRNP 314
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P L EI ++ID + + A A +AG+DG+E+ G+ GYLI++FL N R+D++GG
Sbjct: 128 PHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDY 187
Query: 72 ENRCRFLMQLVREVIVAIGAD 92
NR RF +++VR V +G D
Sbjct: 188 RNRMRFAVEVVRAVRERVGND 208
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 13 QALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIE 72
+ + S+I +V Y AA + AGFD + ++GAH YL QFL N RTD+YGGS+E
Sbjct: 137 KEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLE 196
Query: 73 NRCRFLMQLVREVIVAIGAD 92
NR RF ++ + +V A+G+D
Sbjct: 197 NRARFWLETLEKVKHAVGSD 216
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 13 QALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIE 72
+ + S+I +V Y AA + AGFD + ++GAH YL QFL N RTD+YGGS+E
Sbjct: 137 KEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLE 196
Query: 73 NRCRFLMQLVREVIVAIGAD 92
NR RF ++ + +V A+G+D
Sbjct: 197 NRARFWLETLEKVKHAVGSD 216
>pdb|3HF3|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HGJ|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
Length = 349
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYG 68
YP P+ L + + ++ + + A A++AGF IE+H AHGYL+ FL N RTD YG
Sbjct: 136 YPVPEPLDEAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYG 195
Query: 69 GSIENRCRFLMQL---VREVI 86
GS+ENR RF +Q+ VREV+
Sbjct: 196 GSLENRMRFPLQVAQAVREVV 216
>pdb|3L67|A Chain A, Xenobiotic Reductase A - C25s Variant
pdb|3L68|A Chain A, Xenobiotic Reductase A - C25s Variant With Coumarin
Length = 363
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+ + +I V + AA A AGF+ IE+H AHGYL F + N RTD YGGS
Sbjct: 145 PREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSF 204
Query: 72 ENRCRFLMQL---VREV 85
+NR RFL++ VREV
Sbjct: 205 DNRSRFLLETLAAVREV 221
>pdb|3L65|A Chain A, Xenobiotic Reductase A - C25a Mutant
pdb|3L66|A Chain A, Xenobiotic Reductase A - C25a Variant With Coumarin
Length = 363
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+ + +I V + AA A AGF+ IE+H AHGYL F + N RTD YGGS
Sbjct: 145 PREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSF 204
Query: 72 ENRCRFLMQL---VREV 85
+NR RFL++ VREV
Sbjct: 205 DNRSRFLLETLAAVREV 221
>pdb|2H8Z|A Chain A, Xenobiotic Reductase A In Complex With 8-Hydroxycoumarin
pdb|2H90|A Chain A, Xenobiotic Reductase A In Complex With Coumarin
Length = 359
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+ + +I V + AA A AGF+ IE+H AHGYL F + N RTD YGGS
Sbjct: 144 PREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSF 203
Query: 72 ENRCRFLMQL---VREV 85
+NR RFL++ VREV
Sbjct: 204 DNRSRFLLETLAAVREV 220
>pdb|3L5L|A Chain A, Xenobiotic Reductase A - Oxidized
pdb|3L5M|A Chain A, Xenobiotic Reductase A - Coumarin Bound
pdb|3N19|B Chain B, Xena - Reduced
pdb|3N19|D Chain D, Xena - Reduced
Length = 363
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+ + +I V + AA A AGF+ IE+H AHGYL F + N RTD YGGS
Sbjct: 145 PREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSF 204
Query: 72 ENRCRFLMQL---VREV 85
+NR RFL++ VREV
Sbjct: 205 DNRSRFLLETLAAVREV 221
>pdb|2H8X|A Chain A, Xenobiotic Reductase A-Oxidized
Length = 358
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+ + +I V + AA A AGF+ IE+H AHGYL F + N RTD YGGS
Sbjct: 143 PREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSF 202
Query: 72 ENRCRFLMQL---VREV 85
+NR RFL++ VREV
Sbjct: 203 DNRSRFLLETLAAVREV 219
>pdb|3N14|A Chain A, Xena - W358a
Length = 363
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+ + +I V + AA A AGF+ IE+H AHGYL F + N RTD YGGS
Sbjct: 145 PREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSF 204
Query: 72 ENRCRFLMQL---VREV 85
+NR RFL++ VREV
Sbjct: 205 DNRSRFLLETLAAVREV 221
>pdb|3N16|A Chain A, Xena - Y183f
Length = 363
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSI 71
P+ + +I V + AA A AGF+ IE+H AHG+L F + N RTD YGGS
Sbjct: 145 PREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGFLGQSFFSEHSNKRTDAYGGSF 204
Query: 72 ENRCRFLMQL---VREV 85
+NR RFL++ VREV
Sbjct: 205 DNRSRFLLETLAAVREV 221
>pdb|3L5A|A Chain A, Crystal Structure Of A Probable Nadh-Dependent Flavin
Oxidoreductase From Staphylococcus Aureus
Length = 419
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 93/222 (41%), Gaps = 31/222 (13%)
Query: 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG-SIE 72
A +I +I QYR A L AI+AGFDG+EI A LI F N RTD YG S++
Sbjct: 159 AXSHEKINSIIQQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLK 218
Query: 73 NRCRFLMQL---VREVIVAIGADR--VGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKL- 126
NR R +++ V+EVI D +G R +P + T LG I N+L
Sbjct: 219 NRARLCLEVXRAVQEVIDKEAPDNFILGFRATP-----EETRGSDLGY---TIDEFNQLI 270
Query: 127 -QIDQGAKLTYLHVTQPRYTAYGQTES------GRPGTEDEEAQLLRTWRRSYQGTFICS 179
+ + + YL + Y T GRP + L + + I S
Sbjct: 271 DWVXDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHL------AGRIPLIAS 324
Query: 180 GGFTR-ELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP 220
GG E + AL AD V F++ PD V + P
Sbjct: 325 GGINSPESALDALQH--ADXVGXSSPFVTEPDFVHKLAEQRP 364
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 13 QALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYL-IDQFLKDGINDRTDEYGGSI 71
+A+ +I ++ +R A +I+AG+D + ++GAHGY + FL N RTDEYGGS+
Sbjct: 144 RAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSL 203
Query: 72 ENRCRFLMQLVREVI 86
ENR R L +L+ + +
Sbjct: 204 ENRMRLLRELLEDTL 218
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 130 QGAKLTYLHVTQPRYTAYGQTES 152
QGAK+ + +PR+T +G+TE+
Sbjct: 408 QGAKVRLATIDRPRFTQWGETEA 430
>pdb|2O56|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|C Chain C, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|D Chain D, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|E Chain E, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|F Chain F, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|G Chain G, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|H Chain H, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
Length = 407
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 25 DQYRQAALNAIQAGFDGIEIHGA----HGYLIDQFLKDGINDR 63
+QY QAAL A+ G+D I++ HG Q L + D+
Sbjct: 154 EQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDK 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,169,412
Number of Sequences: 62578
Number of extensions: 345889
Number of successful extensions: 883
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 62
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)