Query 025135
Match_columns 257
No_of_seqs 234 out of 1279
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02411 12-oxophytodienoate r 100.0 2.6E-63 5.6E-68 460.6 28.0 243 9-257 149-391 (391)
2 PRK10605 N-ethylmaleimide redu 100.0 2.4E-60 5.2E-65 437.0 25.8 219 9-244 143-362 (362)
3 COG1902 NemA NADH:flavin oxido 100.0 2E-58 4.3E-63 422.1 25.4 225 9-245 133-359 (363)
4 cd02933 OYE_like_FMN Old yello 100.0 1.4E-55 3.1E-60 402.1 24.7 203 9-226 136-338 (338)
5 PF00724 Oxidored_FMN: NADH:fl 100.0 2.5E-55 5.3E-60 401.5 16.3 202 11-221 135-340 (341)
6 cd04747 OYE_like_5_FMN Old yel 100.0 4.4E-54 9.6E-59 394.3 23.9 204 10-227 129-355 (361)
7 cd02931 ER_like_FMN Enoate red 100.0 1.4E-53 3.1E-58 394.9 24.9 205 10-220 135-353 (382)
8 cd02929 TMADH_HD_FMN Trimethyl 100.0 1.6E-53 3.4E-58 393.1 24.6 201 9-219 134-336 (370)
9 cd04733 OYE_like_2_FMN Old yel 100.0 2.7E-53 5.8E-58 387.7 24.0 201 9-218 133-338 (338)
10 PRK13523 NADPH dehydrogenase N 100.0 2.2E-53 4.7E-58 387.3 22.2 198 9-221 126-324 (337)
11 cd04734 OYE_like_3_FMN Old yel 100.0 1.5E-52 3.2E-57 383.2 25.3 204 9-220 125-333 (343)
12 cd04735 OYE_like_4_FMN Old yel 100.0 5.5E-52 1.2E-56 381.0 21.2 197 9-221 128-332 (353)
13 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 5.1E-51 1.1E-55 374.7 23.8 202 9-220 121-324 (353)
14 cd02803 OYE_like_FMN_family Ol 100.0 2.5E-49 5.5E-54 359.6 24.0 201 9-218 125-327 (327)
15 cd02932 OYE_YqiM_FMN Old yello 100.0 2.1E-49 4.5E-54 361.9 23.3 196 9-217 138-335 (336)
16 PRK08255 salicylyl-CoA 5-hydro 100.0 9E-48 1.9E-52 383.8 24.6 201 9-222 535-737 (765)
17 KOG0134 NADH:flavin oxidoreduc 100.0 2.5E-47 5.5E-52 345.6 17.3 231 9-247 157-393 (400)
18 cd02801 DUS_like_FMN Dihydrour 100.0 6.7E-31 1.4E-35 227.3 15.4 163 24-218 66-229 (231)
19 PRK10550 tRNA-dihydrouridine s 100.0 2.2E-28 4.8E-33 220.9 18.5 169 22-220 72-242 (312)
20 TIGR00737 nifR3_yhdG putative 100.0 4.5E-28 9.7E-33 219.9 17.6 162 24-217 74-237 (319)
21 PRK11815 tRNA-dihydrouridine s 100.0 6.4E-28 1.4E-32 219.9 18.1 171 24-217 76-248 (333)
22 TIGR00742 yjbN tRNA dihydrouri 99.9 1.8E-25 3.8E-30 202.4 19.2 171 24-217 66-238 (318)
23 cd04740 DHOD_1B_like Dihydroor 99.9 1.3E-23 2.8E-28 188.7 18.5 164 24-219 101-277 (296)
24 PRK10415 tRNA-dihydrouridine s 99.9 8.7E-24 1.9E-28 191.9 17.2 162 24-217 76-239 (321)
25 COG0042 tRNA-dihydrouridine sy 99.9 8.6E-23 1.9E-27 185.2 15.6 162 24-215 78-241 (323)
26 PRK07259 dihydroorotate dehydr 99.9 2.4E-22 5.2E-27 180.9 16.9 163 24-219 103-280 (301)
27 TIGR01037 pyrD_sub1_fam dihydr 99.9 6.6E-22 1.4E-26 178.0 18.3 164 24-219 102-280 (300)
28 PF01207 Dus: Dihydrouridine s 99.9 3.7E-23 8E-28 186.9 9.3 166 23-219 64-233 (309)
29 cd02810 DHOD_DHPD_FMN Dihydroo 99.9 1.1E-20 2.5E-25 168.9 17.7 164 24-218 110-289 (289)
30 KOG2335 tRNA-dihydrouridine sy 99.9 5.2E-21 1.1E-25 171.6 14.1 159 24-214 85-245 (358)
31 cd02911 arch_FMN Archeal FMN-b 99.8 3.9E-19 8.5E-24 154.6 14.6 148 24-216 84-232 (233)
32 TIGR00736 nifR3_rel_arch TIM-b 99.8 1.7E-18 3.7E-23 149.8 15.6 146 24-208 79-226 (231)
33 cd02940 DHPD_FMN Dihydropyrimi 99.8 4.3E-18 9.3E-23 153.3 17.0 166 24-218 112-298 (299)
34 PRK05286 dihydroorotate dehydr 99.8 1.7E-18 3.7E-23 158.7 14.2 165 22-219 154-336 (344)
35 cd04739 DHOD_like Dihydroorota 99.8 1.5E-17 3.3E-22 151.4 17.6 163 24-219 111-284 (325)
36 cd04738 DHOD_2_like Dihydrooro 99.8 1.6E-17 3.5E-22 151.3 16.9 167 19-218 142-326 (327)
37 PRK07565 dihydroorotate dehydr 99.8 5.4E-17 1.2E-21 148.3 18.2 163 24-219 113-286 (334)
38 PRK08318 dihydropyrimidine deh 99.7 1.7E-16 3.6E-21 149.2 15.6 166 24-219 112-300 (420)
39 cd04741 DHOD_1A_like Dihydroor 99.7 9E-16 2E-20 137.9 18.4 165 24-219 102-290 (294)
40 TIGR01036 pyrD_sub2 dihydrooro 99.6 1.1E-13 2.4E-18 126.4 16.8 164 23-218 152-334 (335)
41 PLN02495 oxidoreductase, actin 99.6 1.6E-13 3.4E-18 127.1 17.6 167 23-219 125-317 (385)
42 COG0167 PyrD Dihydroorotate de 99.5 2.5E-13 5.4E-18 121.9 15.6 163 24-219 108-288 (310)
43 PF01180 DHO_dh: Dihydroorotat 99.5 2.8E-13 6.1E-18 121.7 13.8 166 21-218 108-290 (295)
44 PRK02506 dihydroorotate dehydr 99.5 1.3E-12 2.7E-17 118.4 16.7 165 24-219 104-288 (310)
45 cd03316 MR_like Mandelate race 99.5 1.5E-12 3.1E-17 119.8 15.0 130 23-202 139-270 (357)
46 PLN02826 dihydroorotate dehydr 99.4 1.1E-11 2.4E-16 115.7 18.8 167 21-219 200-388 (409)
47 KOG2333 Uncharacterized conser 99.3 1.6E-11 3.5E-16 113.8 14.0 168 24-222 331-505 (614)
48 cd02809 alpha_hydroxyacid_oxid 99.3 9.9E-11 2.1E-15 105.5 16.6 132 25-209 129-263 (299)
49 cd04722 TIM_phosphate_binding 99.3 2.1E-10 4.5E-15 95.1 14.6 123 31-203 77-200 (200)
50 TIGR02151 IPP_isom_2 isopenten 99.2 3.2E-10 6.8E-15 103.7 15.9 150 35-218 138-304 (333)
51 PRK05437 isopentenyl pyrophosp 99.0 6.3E-09 1.4E-13 95.9 15.2 150 35-218 145-315 (352)
52 cd03319 L-Ala-DL-Glu_epimerase 98.9 2.6E-08 5.6E-13 90.3 15.2 125 24-205 135-261 (316)
53 cd02811 IDI-2_FMN Isopentenyl- 98.9 3E-08 6.6E-13 90.5 15.4 143 32-208 134-290 (326)
54 cd03329 MR_like_4 Mandelate ra 98.9 3.9E-08 8.5E-13 91.1 15.6 123 25-201 145-270 (368)
55 cd03315 MLE_like Muconate lact 98.9 7.5E-08 1.6E-12 85.1 15.7 122 25-202 87-210 (265)
56 PRK14024 phosphoribosyl isomer 98.8 1E-07 2.2E-12 83.4 12.8 123 70-215 106-235 (241)
57 PRK05458 guanosine 5'-monophos 98.8 4.8E-07 1E-11 82.3 16.8 132 29-207 100-235 (326)
58 cd04731 HisF The cyclase subun 98.8 8.2E-08 1.8E-12 83.8 11.1 151 16-208 59-229 (243)
59 PRK13585 1-(5-phosphoribosyl)- 98.8 2.3E-07 4.9E-12 80.9 13.8 141 29-216 89-236 (241)
60 TIGR03572 WbuZ glycosyl amidat 98.7 4.1E-07 8.9E-12 78.9 13.0 75 116-205 155-230 (232)
61 PRK01130 N-acetylmannosamine-6 98.7 6.3E-07 1.4E-11 77.2 14.1 135 29-215 79-214 (221)
62 cd04731 HisF The cyclase subun 98.7 1.3E-07 2.9E-12 82.5 9.8 88 115-218 28-116 (243)
63 cd04732 HisA HisA. Phosphorib 98.7 6.3E-07 1.4E-11 77.6 13.9 83 116-214 148-231 (234)
64 cd03328 MR_like_3 Mandelate ra 98.7 7E-07 1.5E-11 82.3 14.8 121 25-201 140-264 (352)
65 cd03327 MR_like_2 Mandelate ra 98.6 9.8E-07 2.1E-11 81.0 15.2 128 25-201 122-251 (341)
66 PRK00748 1-(5-phosphoribosyl)- 98.6 4.2E-07 9.2E-12 78.6 12.1 78 116-208 148-226 (233)
67 COG4948 L-alanine-DL-glutamate 98.6 6.5E-07 1.4E-11 83.0 14.0 123 24-201 144-268 (372)
68 PRK01033 imidazole glycerol ph 98.6 3.9E-07 8.5E-12 80.5 11.4 86 116-216 154-240 (258)
69 cd03326 MR_like_1 Mandelate ra 98.6 1.4E-06 3E-11 81.4 15.1 122 25-201 162-289 (385)
70 cd03321 mandelate_racemase Man 98.6 7.9E-07 1.7E-11 82.0 12.8 123 24-201 142-266 (355)
71 cd04732 HisA HisA. Phosphorib 98.6 3.6E-07 7.8E-12 79.1 10.0 88 115-218 30-118 (234)
72 PRK04180 pyridoxal biosynthesi 98.6 4E-07 8.6E-12 80.7 10.2 146 28-210 27-242 (293)
73 TIGR00007 phosphoribosylformim 98.6 1.1E-06 2.4E-11 76.0 12.6 77 116-208 147-224 (230)
74 cd04737 LOX_like_FMN L-Lactate 98.6 6.1E-06 1.3E-10 76.0 17.9 102 77-209 208-312 (351)
75 TIGR00735 hisF imidazoleglycer 98.5 2.4E-06 5.3E-11 75.3 14.3 79 114-207 155-234 (254)
76 PRK02083 imidazole glycerol ph 98.5 6.1E-07 1.3E-11 78.9 10.4 87 116-218 32-119 (253)
77 cd04729 NanE N-acetylmannosami 98.5 1.6E-06 3.4E-11 74.6 12.6 133 29-212 83-216 (219)
78 cd03324 rTSbeta_L-fuconate_deh 98.5 3E-06 6.5E-11 79.8 14.9 121 25-201 198-323 (415)
79 PRK15072 bifunctional D-altron 98.5 4.5E-06 9.7E-11 78.4 16.0 145 25-201 129-286 (404)
80 cd00381 IMPDH IMPDH: The catal 98.5 6.3E-06 1.4E-10 75.2 16.3 136 26-212 94-236 (325)
81 KOG2334 tRNA-dihydrouridine sy 98.5 8.1E-07 1.8E-11 81.8 10.2 143 38-213 106-253 (477)
82 cd00945 Aldolase_Class_I Class 98.5 8.3E-06 1.8E-10 68.0 15.4 134 24-202 64-201 (201)
83 cd02808 GltS_FMN Glutamate syn 98.5 6.1E-06 1.3E-10 77.2 15.9 111 76-207 199-319 (392)
84 TIGR01304 IMP_DH_rel_2 IMP deh 98.5 1.8E-06 3.9E-11 79.9 12.0 117 28-205 102-219 (369)
85 TIGR00735 hisF imidazoleglycer 98.5 1.4E-06 3E-11 76.8 10.7 87 116-218 32-119 (254)
86 TIGR01306 GMP_reduct_2 guanosi 98.5 1.1E-05 2.3E-10 73.3 16.3 126 33-207 101-232 (321)
87 cd02922 FCB2_FMN Flavocytochro 98.5 2.4E-05 5.3E-10 71.9 18.7 152 28-210 134-308 (344)
88 cd03322 rpsA The starvation se 98.4 5.2E-06 1.1E-10 76.8 14.3 115 25-202 128-244 (361)
89 cd04730 NPD_like 2-Nitropropan 98.4 9.8E-06 2.1E-10 70.1 14.7 80 119-211 114-194 (236)
90 PRK14017 galactonate dehydrata 98.4 1.2E-05 2.7E-10 74.9 15.8 131 25-202 126-258 (382)
91 TIGR02708 L_lactate_ox L-lacta 98.4 9.2E-06 2E-10 75.1 14.6 100 77-207 215-317 (367)
92 TIGR03151 enACPred_II putative 98.4 1.7E-05 3.7E-10 71.9 15.3 76 118-208 120-196 (307)
93 TIGR01302 IMP_dehydrog inosine 98.4 1.9E-05 4.1E-10 75.2 16.2 145 28-221 226-377 (450)
94 cd03325 D-galactonate_dehydrat 98.3 1.5E-05 3.2E-10 73.5 14.7 129 27-202 127-257 (352)
95 PRK13125 trpA tryptophan synth 98.3 4E-05 8.7E-10 67.2 16.3 162 24-207 17-219 (244)
96 PRK15440 L-rhamnonate dehydrat 98.3 1.5E-05 3.4E-10 74.5 14.4 119 34-201 168-290 (394)
97 PRK07695 transcriptional regul 98.3 3.1E-05 6.7E-10 65.7 15.1 105 82-215 86-190 (201)
98 PRK02714 O-succinylbenzoate sy 98.3 2.5E-05 5.5E-10 71.1 15.5 122 25-201 120-246 (320)
99 TIGR01163 rpe ribulose-phospha 98.3 5.2E-05 1.1E-09 64.3 16.0 53 163-216 150-207 (210)
100 TIGR02534 mucon_cyclo muconate 98.3 2.1E-05 4.5E-10 72.9 14.6 113 35-201 154-267 (368)
101 PTZ00314 inosine-5'-monophosph 98.3 2.4E-05 5.2E-10 75.3 15.3 136 28-213 243-384 (495)
102 cd03318 MLE Muconate Lactonizi 98.3 2.7E-05 5.7E-10 72.1 14.7 118 29-201 148-268 (365)
103 cd03320 OSBS o-Succinylbenzoat 98.3 2.3E-05 4.9E-10 69.4 13.4 118 28-202 87-206 (263)
104 PRK06843 inosine 5-monophospha 98.2 5.3E-05 1.1E-09 70.9 16.0 139 26-212 153-295 (404)
105 TIGR01769 GGGP geranylgeranylg 98.2 0.00011 2.4E-09 62.8 16.3 40 162-202 165-205 (205)
106 cd03323 D-glucarate_dehydratas 98.2 3.3E-05 7.2E-10 72.4 14.2 118 26-201 171-290 (395)
107 PRK02083 imidazole glycerol ph 98.2 3.1E-05 6.8E-10 68.1 13.1 78 116-208 155-233 (253)
108 PLN02535 glycolate oxidase 98.2 4.6E-05 1E-09 70.4 14.5 103 77-210 210-315 (364)
109 TIGR03572 WbuZ glycosyl amidat 98.2 1.4E-05 3.1E-10 69.2 9.8 88 115-218 31-119 (232)
110 cd03317 NAAAR N-acylamino acid 98.2 9.2E-05 2E-09 68.2 15.6 118 25-201 139-257 (354)
111 PLN02274 inosine-5'-monophosph 98.1 9E-05 2E-09 71.5 15.9 148 28-224 250-404 (505)
112 cd00429 RPE Ribulose-5-phospha 98.1 0.00025 5.5E-09 60.0 16.8 54 162-216 150-208 (211)
113 PF04131 NanE: Putative N-acet 98.1 0.00014 3E-09 61.0 14.4 127 31-214 57-184 (192)
114 PRK00748 1-(5-phosphoribosyl)- 98.1 2.1E-05 4.6E-10 68.0 10.0 87 116-218 32-119 (233)
115 PRK08649 inosine 5-monophospha 98.1 2E-05 4.3E-10 73.1 10.0 101 75-205 117-218 (368)
116 TIGR03247 glucar-dehydr glucar 98.1 9.3E-05 2E-09 70.3 14.5 119 26-201 183-308 (441)
117 TIGR01303 IMP_DH_rel_1 IMP deh 98.1 8.2E-05 1.8E-09 71.3 13.7 147 14-210 213-365 (475)
118 cd04727 pdxS PdxS is a subunit 98.1 0.00024 5.1E-09 63.1 15.5 150 10-210 47-235 (283)
119 cd04728 ThiG Thiazole synthase 98.1 0.00028 6E-09 61.5 15.6 137 25-214 76-218 (248)
120 PRK00507 deoxyribose-phosphate 98.1 0.00014 3E-09 63.0 13.8 132 28-205 77-211 (221)
121 TIGR01927 menC_gamma/gm+ o-suc 98.0 0.00017 3.6E-09 65.4 14.6 111 36-202 122-236 (307)
122 PF00478 IMPDH: IMP dehydrogen 98.0 9.2E-05 2E-09 68.1 12.5 134 28-209 110-247 (352)
123 PRK06512 thiamine-phosphate py 98.0 0.00069 1.5E-08 58.6 17.2 105 82-215 100-205 (221)
124 KOG1436 Dihydroorotate dehydro 98.0 0.00015 3.3E-09 64.9 12.9 169 13-218 188-377 (398)
125 TIGR01928 menC_lowGC/arch o-su 98.0 0.00027 5.9E-09 64.4 15.2 118 25-201 134-252 (324)
126 PLN02334 ribulose-phosphate 3- 98.0 0.00032 7E-09 60.8 14.6 53 162-215 162-215 (229)
127 PRK13585 1-(5-phosphoribosyl)- 98.0 5.2E-05 1.1E-09 66.0 9.7 87 116-218 34-121 (241)
128 PRK07807 inosine 5-monophospha 98.0 0.00021 4.5E-09 68.6 14.5 148 14-213 215-370 (479)
129 COG0352 ThiE Thiamine monophos 98.0 0.00034 7.4E-09 60.0 14.2 106 82-216 94-200 (211)
130 PRK05096 guanosine 5'-monophos 98.0 0.00032 7E-09 63.8 14.5 139 25-213 108-253 (346)
131 PRK07107 inosine 5-monophospha 97.9 0.00021 4.5E-09 69.0 14.0 134 26-209 242-388 (502)
132 cd04724 Tryptophan_synthase_al 97.9 0.00084 1.8E-08 58.8 16.7 165 25-206 14-219 (242)
133 PRK00208 thiG thiazole synthas 97.9 0.00068 1.5E-08 59.1 15.7 136 25-213 76-217 (250)
134 PRK02901 O-succinylbenzoate sy 97.9 0.00051 1.1E-08 62.8 15.8 112 37-202 101-214 (327)
135 TIGR03128 RuMP_HxlA 3-hexulose 97.9 0.0004 8.6E-09 58.9 14.1 127 30-212 68-196 (206)
136 PF01070 FMN_dh: FMN-dependent 97.9 0.00017 3.6E-09 66.8 12.5 101 76-207 211-314 (356)
137 PRK14024 phosphoribosyl isomer 97.9 7.9E-05 1.7E-09 65.2 9.9 85 117-218 35-120 (241)
138 cd04726 KGPDC_HPS 3-Keto-L-gul 97.9 0.00072 1.6E-08 57.0 15.5 130 31-216 70-200 (202)
139 COG0107 HisF Imidazoleglycerol 97.9 8.9E-05 1.9E-09 63.7 9.7 85 117-217 33-118 (256)
140 PRK07028 bifunctional hexulose 97.9 0.00033 7.2E-09 66.3 14.6 127 30-212 73-200 (430)
141 PRK13587 1-(5-phosphoribosyl)- 97.9 0.00011 2.3E-09 64.1 9.8 86 117-218 34-121 (234)
142 PLN02979 glycolate oxidase 97.9 0.00079 1.7E-08 62.1 15.6 99 78-207 211-312 (366)
143 TIGR01949 AroFGH_arch predicte 97.8 0.00078 1.7E-08 59.5 14.9 139 27-214 92-239 (258)
144 PF04481 DUF561: Protein of un 97.8 0.00027 5.9E-09 60.2 11.2 140 33-206 76-218 (242)
145 PRK05581 ribulose-phosphate 3- 97.8 0.00062 1.4E-08 58.2 13.8 53 163-216 155-212 (220)
146 cd00564 TMP_TenI Thiamine mono 97.8 0.0034 7.3E-08 52.1 17.7 54 162-216 139-192 (196)
147 PF02581 TMP-TENI: Thiamine mo 97.8 0.0014 3E-08 54.7 15.2 132 13-204 34-179 (180)
148 PRK03512 thiamine-phosphate py 97.8 0.0029 6.4E-08 54.3 17.5 84 121-216 116-200 (211)
149 TIGR02129 hisA_euk phosphoribo 97.8 0.00016 3.5E-09 63.5 9.7 80 117-218 41-124 (253)
150 cd00405 PRAI Phosphoribosylant 97.8 0.0006 1.3E-08 57.9 13.0 144 10-211 30-190 (203)
151 cd04736 MDH_FMN Mandelate dehy 97.8 0.00036 7.7E-09 64.5 12.3 100 76-206 222-322 (361)
152 PF00977 His_biosynth: Histidi 97.8 9.2E-05 2E-09 64.3 8.0 86 117-218 32-118 (229)
153 cd00958 DhnA Class I fructose- 97.8 0.001 2.2E-08 57.6 14.6 78 114-215 143-227 (235)
154 cd00331 IGPS Indole-3-glycerol 97.8 0.0016 3.5E-08 55.8 15.5 79 120-216 134-215 (217)
155 TIGR00262 trpA tryptophan synt 97.8 0.0025 5.3E-08 56.4 17.0 47 160-207 185-232 (256)
156 COG0106 HisA Phosphoribosylfor 97.8 0.00016 3.4E-09 62.9 9.1 87 117-219 34-121 (241)
157 PF01645 Glu_synthase: Conserv 97.8 0.00026 5.6E-09 65.5 11.0 109 76-206 188-307 (368)
158 PRK06806 fructose-bisphosphate 97.8 0.0018 3.9E-08 58.0 16.2 122 70-209 109-237 (281)
159 PLN02591 tryptophan synthase 97.8 0.0075 1.6E-07 53.2 19.7 162 25-207 16-223 (250)
160 PRK01033 imidazole glycerol ph 97.8 0.00021 4.6E-09 63.1 10.0 86 116-217 32-118 (258)
161 PRK13111 trpA tryptophan synth 97.7 0.003 6.4E-08 55.9 17.0 161 25-206 26-232 (258)
162 TIGR00126 deoC deoxyribose-pho 97.7 0.00088 1.9E-08 57.5 13.2 130 29-204 74-206 (211)
163 PRK13587 1-(5-phosphoribosyl)- 97.7 0.00097 2.1E-08 58.2 13.7 76 116-207 150-226 (234)
164 CHL00200 trpA tryptophan synth 97.7 0.0037 8E-08 55.5 17.5 161 25-206 29-235 (263)
165 cd00308 enolase_like Enolase-s 97.7 0.00037 7.9E-09 60.3 10.9 92 79-201 81-174 (229)
166 cd02812 PcrB_like PcrB_like pr 97.7 0.00038 8.2E-09 60.1 10.8 85 111-216 132-218 (219)
167 PRK08883 ribulose-phosphate 3- 97.7 0.0019 4E-08 55.9 14.8 125 35-214 78-207 (220)
168 COG0269 SgbH 3-hexulose-6-phos 97.7 0.001 2.2E-08 56.8 12.6 128 29-212 71-202 (217)
169 PRK14114 1-(5-phosphoribosyl)- 97.7 0.00032 7E-09 61.4 9.9 84 117-217 33-117 (241)
170 TIGR01768 GGGP-family geranylg 97.7 0.0004 8.8E-09 60.0 9.9 54 162-216 167-222 (223)
171 cd00959 DeoC 2-deoxyribose-5-p 97.7 0.0019 4.2E-08 54.9 14.0 127 28-200 72-201 (203)
172 TIGR00693 thiE thiamine-phosph 97.6 0.006 1.3E-07 51.2 16.6 53 162-215 140-193 (196)
173 PLN02446 (5-phosphoribosyl)-5- 97.6 0.00047 1E-08 60.9 9.6 82 116-217 45-130 (262)
174 PRK05567 inosine 5'-monophosph 97.6 0.0019 4.2E-08 62.1 14.6 133 28-209 230-367 (486)
175 TIGR00007 phosphoribosylformim 97.6 0.00059 1.3E-08 58.9 10.1 86 117-218 31-117 (230)
176 PRK07315 fructose-bisphosphate 97.6 0.0054 1.2E-07 55.3 16.5 140 31-208 92-238 (293)
177 TIGR01304 IMP_DH_rel_2 IMP deh 97.6 0.0021 4.6E-08 59.6 14.1 34 174-208 256-290 (369)
178 TIGR01305 GMP_reduct_1 guanosi 97.6 0.004 8.7E-08 56.7 15.4 128 30-208 111-247 (343)
179 PRK04128 1-(5-phosphoribosyl)- 97.5 0.00056 1.2E-08 59.4 9.4 56 160-217 60-116 (228)
180 PRK07226 fructose-bisphosphate 97.5 0.0025 5.4E-08 56.6 13.7 141 25-213 93-242 (267)
181 COG0107 HisF Imidazoleglycerol 97.5 0.0018 4E-08 55.8 12.1 139 29-209 87-236 (256)
182 CHL00162 thiG thiamin biosynth 97.5 0.0041 8.9E-08 54.4 14.4 132 26-211 85-227 (267)
183 COG0036 Rpe Pentose-5-phosphat 97.5 0.0048 1E-07 53.0 14.5 137 17-217 70-212 (220)
184 PTZ00170 D-ribulose-5-phosphat 97.5 0.0048 1E-07 53.6 14.6 130 30-214 80-213 (228)
185 cd03332 LMO_FMN L-Lactate 2-mo 97.5 0.0016 3.6E-08 60.6 12.1 99 77-206 240-341 (383)
186 PRK14114 1-(5-phosphoribosyl)- 97.5 0.0028 6E-08 55.6 12.9 78 116-208 146-229 (241)
187 TIGR01859 fruc_bis_ald_ fructo 97.5 0.014 3.1E-07 52.3 17.5 119 70-206 109-234 (282)
188 PRK13586 1-(5-phosphoribosyl)- 97.5 0.00098 2.1E-08 58.1 9.8 85 117-218 33-118 (232)
189 PRK08649 inosine 5-monophospha 97.5 0.0031 6.7E-08 58.6 13.5 39 173-212 256-295 (368)
190 COG0106 HisA Phosphoribosylfor 97.4 0.0022 4.8E-08 55.8 11.6 113 80-208 112-227 (241)
191 TIGR00343 pyridoxal 5'-phospha 97.4 0.0046 1E-07 55.0 13.7 49 162-211 186-239 (287)
192 PRK12290 thiE thiamine-phospha 97.4 0.011 2.4E-07 55.8 17.0 81 122-214 315-404 (437)
193 PRK00278 trpC indole-3-glycero 97.4 0.0059 1.3E-07 54.1 14.5 127 30-216 125-254 (260)
194 PF03437 BtpA: BtpA family; I 97.4 0.0025 5.5E-08 56.2 12.0 171 19-210 23-235 (254)
195 TIGR01919 hisA-trpF 1-(5-phosp 97.4 0.0013 2.9E-08 57.6 10.2 83 118-217 35-118 (243)
196 PLN02446 (5-phosphoribosyl)-5- 97.4 0.0029 6.2E-08 56.0 12.0 139 29-205 95-241 (262)
197 PF03060 NMO: Nitronate monoox 97.4 0.0059 1.3E-07 55.9 14.3 118 30-208 105-225 (330)
198 PRK11197 lldD L-lactate dehydr 97.4 0.0025 5.5E-08 59.3 11.8 97 80-207 235-334 (381)
199 COG1646 Predicted phosphate-bi 97.4 0.0037 8.1E-08 54.0 11.9 42 175-217 193-235 (240)
200 PF00977 His_biosynth: Histidi 97.4 0.0018 3.8E-08 56.3 10.1 111 81-207 111-225 (229)
201 PRK04169 geranylgeranylglycery 97.4 0.0016 3.5E-08 56.7 9.7 55 161-216 171-228 (232)
202 TIGR01919 hisA-trpF 1-(5-phosp 97.3 0.0053 1.2E-07 53.8 12.9 80 115-209 150-232 (243)
203 PLN02493 probable peroxisomal 97.3 0.0033 7.1E-08 58.3 12.0 97 79-206 213-312 (367)
204 PRK06801 hypothetical protein; 97.3 0.024 5.2E-07 50.9 17.2 139 31-207 90-238 (286)
205 cd00452 KDPG_aldolase KDPG and 97.3 0.0045 9.8E-08 52.1 11.9 121 16-206 42-175 (190)
206 PRK13307 bifunctional formalde 97.3 0.012 2.5E-07 55.2 15.6 124 31-212 243-368 (391)
207 PLN02617 imidazole glycerol ph 97.3 0.004 8.6E-08 60.6 12.6 78 115-207 439-517 (538)
208 PF01791 DeoC: DeoC/LacD famil 97.3 0.012 2.7E-07 51.0 14.4 141 28-206 79-234 (236)
209 PRK15129 L-Ala-D/L-Glu epimera 97.3 0.01 2.2E-07 54.1 14.4 72 25-138 131-202 (321)
210 PF00290 Trp_syntA: Tryptophan 97.2 0.046 1E-06 48.4 17.6 162 24-206 23-230 (259)
211 PLN02898 HMP-P kinase/thiamin- 97.2 0.017 3.6E-07 55.9 16.0 82 121-215 404-488 (502)
212 cd00945 Aldolase_Class_I Class 97.2 0.024 5.2E-07 46.9 15.0 142 25-218 13-168 (201)
213 PRK02615 thiamine-phosphate py 97.2 0.0074 1.6E-07 55.6 12.7 78 122-212 255-332 (347)
214 PRK08745 ribulose-phosphate 3- 97.2 0.027 5.8E-07 48.8 15.5 122 35-213 82-210 (223)
215 PRK08005 epimerase; Validated 97.2 0.027 5.9E-07 48.3 15.3 126 33-215 76-204 (210)
216 COG0274 DeoC Deoxyribose-phosp 97.2 0.0078 1.7E-07 51.8 11.8 133 28-205 80-215 (228)
217 cd04723 HisA_HisF Phosphoribos 97.2 0.0024 5.2E-08 55.6 8.9 85 117-219 38-123 (233)
218 PRK09140 2-dehydro-3-deoxy-6-p 97.2 0.053 1.1E-06 46.4 16.9 46 162-208 138-185 (206)
219 PF05690 ThiG: Thiazole biosyn 97.1 0.042 9E-07 47.7 15.3 137 24-214 75-218 (247)
220 TIGR02129 hisA_euk phosphoribo 97.1 0.012 2.7E-07 51.8 12.3 152 16-207 64-237 (253)
221 PRK08999 hypothetical protein; 97.0 0.02 4.3E-07 51.7 13.6 72 121-205 240-311 (312)
222 cd00377 ICL_PEPM Members of th 97.0 0.035 7.6E-07 48.6 14.5 139 25-206 84-230 (243)
223 cd04723 HisA_HisF Phosphoribos 97.0 0.026 5.6E-07 49.1 13.5 46 162-208 178-224 (233)
224 PRK00043 thiE thiamine-phospha 97.0 0.0062 1.4E-07 51.5 9.5 52 162-214 148-200 (212)
225 COG5016 Pyruvate/oxaloacetate 97.0 0.02 4.4E-07 53.2 13.2 128 21-202 97-231 (472)
226 cd00408 DHDPS-like Dihydrodipi 96.9 0.055 1.2E-06 48.0 15.5 150 14-217 14-171 (281)
227 PRK09517 multifunctional thiam 96.9 0.029 6.3E-07 56.9 15.2 73 134-212 129-204 (755)
228 PF01884 PcrB: PcrB family; I 96.9 0.0051 1.1E-07 53.4 8.4 47 164-211 173-220 (230)
229 COG1304 idi Isopentenyl diphos 96.9 0.014 3E-07 54.1 11.7 46 161-207 259-307 (360)
230 PRK04302 triosephosphate isome 96.9 0.065 1.4E-06 46.2 15.3 53 163-216 162-216 (223)
231 TIGR01060 eno phosphopyruvate 96.9 0.019 4E-07 54.5 12.7 109 71-201 212-335 (425)
232 cd01568 QPRTase_NadC Quinolina 96.9 0.031 6.8E-07 49.7 13.4 113 60-209 144-262 (269)
233 COG0159 TrpA Tryptophan syntha 96.9 0.2 4.4E-06 44.4 18.2 161 25-206 31-237 (265)
234 PLN02617 imidazole glycerol ph 96.8 0.0091 2E-07 58.1 10.4 90 116-218 269-382 (538)
235 TIGR00734 hisAF_rel hisA/hisF 96.8 0.0073 1.6E-07 52.2 8.8 81 117-216 39-122 (221)
236 PRK05105 O-succinylbenzoate sy 96.8 0.039 8.4E-07 50.3 14.0 106 37-201 127-236 (322)
237 PRK08185 hypothetical protein; 96.8 0.06 1.3E-06 48.3 14.8 120 70-205 103-231 (283)
238 cd01572 QPRTase Quinolinate ph 96.8 0.023 5E-07 50.6 12.1 106 60-206 145-258 (268)
239 PLN02980 2-oxoglutarate decarb 96.8 0.026 5.6E-07 62.0 14.7 119 25-199 1092-1216(1655)
240 cd03314 MAL Methylaspartate am 96.8 0.031 6.8E-07 52.0 13.2 105 76-201 177-290 (369)
241 PRK14057 epimerase; Provisiona 96.8 0.093 2E-06 46.3 15.2 125 35-215 95-234 (254)
242 PRK05283 deoxyribose-phosphate 96.7 0.028 6.1E-07 49.6 11.9 124 28-194 86-217 (257)
243 PRK06552 keto-hydroxyglutarate 96.7 0.15 3.2E-06 43.9 16.0 44 163-207 144-188 (213)
244 PRK08091 ribulose-phosphate 3- 96.7 0.14 3E-06 44.5 15.8 125 34-214 87-219 (228)
245 COG2022 ThiG Uncharacterized e 96.7 0.1 2.2E-06 45.2 14.6 137 24-214 82-225 (262)
246 TIGR00078 nadC nicotinate-nucl 96.7 0.029 6.3E-07 49.8 11.9 106 60-206 141-254 (265)
247 TIGR01502 B_methylAsp_ase meth 96.7 0.069 1.5E-06 50.4 14.8 137 24-202 179-327 (408)
248 PRK11840 bifunctional sulfur c 96.7 0.13 2.8E-06 46.9 15.7 134 25-212 150-288 (326)
249 PRK08072 nicotinate-nucleotide 96.7 0.056 1.2E-06 48.4 13.3 105 61-206 152-264 (277)
250 TIGR01740 pyrF orotidine 5'-ph 96.6 0.08 1.7E-06 45.3 13.5 139 18-215 59-209 (213)
251 PF01188 MR_MLE: Mandelate rac 96.6 0.02 4.4E-07 39.7 8.1 65 81-178 1-66 (67)
252 cd00950 DHDPS Dihydrodipicolin 96.6 0.13 2.7E-06 45.9 15.2 129 27-199 23-159 (284)
253 PRK07565 dihydroorotate dehydr 96.5 0.14 3.1E-06 46.8 15.7 108 75-201 86-196 (334)
254 COG3010 NanE Putative N-acetyl 96.5 0.098 2.1E-06 44.6 13.1 74 123-211 143-217 (229)
255 TIGR00674 dapA dihydrodipicoli 96.5 0.1 2.2E-06 46.6 13.9 130 14-194 15-152 (285)
256 PRK07709 fructose-bisphosphate 96.5 0.14 3.1E-06 45.9 14.7 136 32-205 94-236 (285)
257 PRK03170 dihydrodipicolinate s 96.4 0.18 3.8E-06 45.2 15.3 126 27-196 24-157 (292)
258 COG2070 Dioxygenases related t 96.4 0.0088 1.9E-07 54.9 6.9 46 161-207 171-218 (336)
259 PRK13586 1-(5-phosphoribosyl)- 96.4 0.04 8.7E-07 48.0 10.6 110 80-207 110-223 (232)
260 TIGR00734 hisAF_rel hisA/hisF 96.4 0.024 5.3E-07 49.0 9.1 46 161-207 172-218 (221)
261 PF00218 IGPS: Indole-3-glycer 96.4 0.11 2.4E-06 45.9 13.3 50 166-216 200-252 (254)
262 TIGR01858 tag_bisphos_ald clas 96.4 0.23 5E-06 44.5 15.5 138 31-206 88-234 (282)
263 COG0329 DapA Dihydrodipicolina 96.4 0.13 2.8E-06 46.5 14.0 145 25-216 25-177 (299)
264 PRK09195 gatY tagatose-bisphos 96.4 0.27 5.8E-06 44.2 15.8 138 31-206 90-236 (284)
265 PRK07998 gatY putative fructos 96.3 0.37 8E-06 43.3 16.5 138 30-206 89-233 (283)
266 PRK12738 kbaY tagatose-bisphos 96.3 0.36 7.9E-06 43.4 16.1 138 30-205 89-235 (286)
267 PRK05742 nicotinate-nucleotide 96.2 0.12 2.5E-06 46.3 12.8 109 60-209 153-268 (277)
268 TIGR00259 thylakoid_BtpA membr 96.2 0.045 9.7E-07 48.4 10.0 138 29-207 93-232 (257)
269 cd00003 PNPsynthase Pyridoxine 96.2 0.089 1.9E-06 45.6 11.5 41 171-211 180-220 (234)
270 PRK07428 nicotinate-nucleotide 96.1 0.084 1.8E-06 47.5 11.4 113 60-209 159-278 (288)
271 cd03313 enolase Enolase: Enola 96.1 0.063 1.4E-06 50.6 11.1 102 78-201 212-334 (408)
272 PRK13813 orotidine 5'-phosphat 96.1 0.25 5.5E-06 42.0 14.0 128 32-214 74-204 (215)
273 PRK08610 fructose-bisphosphate 96.1 0.49 1.1E-05 42.6 16.1 135 32-204 94-235 (286)
274 PF00701 DHDPS: Dihydrodipicol 96.1 0.15 3.2E-06 45.6 12.8 125 25-193 22-154 (289)
275 PRK12737 gatY tagatose-bisphos 96.1 0.27 5.8E-06 44.2 14.2 137 32-206 91-236 (284)
276 PRK00077 eno enolase; Provisio 96.0 0.071 1.5E-06 50.6 11.0 102 78-201 215-334 (425)
277 PRK12330 oxaloacetate decarbox 96.0 0.36 7.7E-06 46.7 15.6 126 23-201 98-231 (499)
278 PRK04147 N-acetylneuraminate l 96.0 0.34 7.4E-06 43.5 14.7 128 14-192 20-156 (293)
279 TIGR00559 pdxJ pyridoxine 5'-p 96.0 0.15 3.3E-06 44.3 11.7 41 171-211 180-221 (237)
280 PRK12857 fructose-1,6-bisphosp 95.9 0.66 1.4E-05 41.7 16.1 137 31-205 90-235 (284)
281 PRK09722 allulose-6-phosphate 95.9 0.56 1.2E-05 40.8 15.2 122 34-211 78-208 (229)
282 PRK07455 keto-hydroxyglutarate 95.9 0.044 9.4E-07 46.1 8.1 45 162-207 140-185 (187)
283 cd00954 NAL N-Acetylneuraminic 95.9 0.56 1.2E-05 41.9 15.8 122 27-192 23-154 (288)
284 cd01573 modD_like ModD; Quinol 95.9 0.12 2.6E-06 46.1 11.3 91 79-206 171-262 (272)
285 TIGR02320 PEP_mutase phosphoen 95.9 0.47 1E-05 42.6 15.1 145 26-206 93-244 (285)
286 PRK05848 nicotinate-nucleotide 95.9 0.15 3.2E-06 45.6 11.7 111 60-207 145-262 (273)
287 TIGR01182 eda Entner-Doudoroff 95.8 0.07 1.5E-06 45.6 9.1 81 112-217 18-99 (204)
288 TIGR00167 cbbA ketose-bisphosp 95.8 0.68 1.5E-05 41.7 15.8 119 70-205 112-239 (288)
289 PF01116 F_bP_aldolase: Fructo 95.8 0.81 1.8E-05 41.2 16.3 141 30-206 88-239 (287)
290 PRK13306 ulaD 3-keto-L-gulonat 95.8 0.24 5.2E-06 42.6 12.4 45 165-210 153-199 (216)
291 TIGR02317 prpB methylisocitrat 95.8 0.5 1.1E-05 42.5 14.8 138 27-206 90-233 (285)
292 TIGR01182 eda Entner-Doudoroff 95.8 0.53 1.1E-05 40.2 14.3 46 163-209 137-183 (204)
293 PRK06015 keto-hydroxyglutarate 95.8 0.075 1.6E-06 45.3 9.0 81 112-217 14-95 (201)
294 PF03740 PdxJ: Pyridoxal phosp 95.8 0.045 9.8E-07 47.7 7.7 41 171-211 183-223 (239)
295 cd00951 KDGDH 5-dehydro-4-deox 95.8 0.32 6.9E-06 43.6 13.6 128 14-192 17-148 (289)
296 PRK03620 5-dehydro-4-deoxygluc 95.7 0.36 7.8E-06 43.6 13.8 126 14-191 24-154 (303)
297 PRK00230 orotidine 5'-phosphat 95.7 0.24 5.2E-06 43.0 12.2 47 166-213 160-218 (230)
298 cd00952 CHBPH_aldolase Trans-o 95.7 0.38 8.1E-06 43.6 13.9 127 14-191 25-160 (309)
299 COG0434 SgcQ Predicted TIM-bar 95.7 0.65 1.4E-05 40.5 14.3 47 158-206 190-236 (263)
300 TIGR02313 HpaI-NOT-DapA 2,4-di 95.7 0.5 1.1E-05 42.5 14.5 129 14-192 17-153 (294)
301 PRK12858 tagatose 1,6-diphosph 95.7 0.66 1.4E-05 42.8 15.3 154 31-209 112-283 (340)
302 TIGR00222 panB 3-methyl-2-oxob 95.7 0.2 4.4E-06 44.4 11.5 78 113-219 159-236 (263)
303 cd06556 ICL_KPHMT Members of t 95.7 1.2 2.5E-05 39.1 16.2 146 29-220 23-191 (240)
304 PRK09197 fructose-bisphosphate 95.6 1.2 2.6E-05 41.1 16.8 156 17-205 107-282 (350)
305 TIGR03249 KdgD 5-dehydro-4-deo 95.6 0.57 1.2E-05 42.1 14.6 127 14-192 22-153 (296)
306 PLN02424 ketopantoate hydroxym 95.6 0.21 4.6E-06 45.6 11.5 45 113-181 181-225 (332)
307 PRK05718 keto-hydroxyglutarate 95.6 0.22 4.8E-06 42.8 11.2 81 112-217 25-106 (212)
308 KOG2550 IMP dehydrogenase/GMP 95.6 0.096 2.1E-06 48.9 9.3 133 32-212 257-393 (503)
309 PF01081 Aldolase: KDPG and KH 95.6 0.074 1.6E-06 45.2 8.1 81 112-217 18-99 (196)
310 PF01729 QRPTase_C: Quinolinat 95.6 0.26 5.7E-06 40.8 11.2 110 61-207 44-160 (169)
311 cd00947 TBP_aldolase_IIB Tagat 95.5 1.1 2.3E-05 40.1 15.9 138 32-206 86-230 (276)
312 PRK04128 1-(5-phosphoribosyl)- 95.5 0.29 6.3E-06 42.4 12.0 36 172-208 181-217 (228)
313 TIGR00683 nanA N-acetylneurami 95.5 1.1 2.4E-05 40.2 16.0 124 26-193 22-155 (290)
314 PRK11750 gltB glutamate syntha 95.5 0.059 1.3E-06 57.7 8.6 108 78-206 983-1100(1485)
315 cd04739 DHOD_like Dihydroorota 95.5 1.3 2.9E-05 40.4 16.6 90 93-201 101-194 (325)
316 TIGR00343 pyridoxal 5'-phospha 95.4 0.18 4E-06 45.0 10.4 120 28-202 20-141 (287)
317 PRK05835 fructose-bisphosphate 95.4 1 2.2E-05 40.9 15.3 140 30-205 89-258 (307)
318 cd00331 IGPS Indole-3-glycerol 95.4 0.074 1.6E-06 45.4 7.7 82 114-215 31-113 (217)
319 COG0800 Eda 2-keto-3-deoxy-6-p 95.4 0.12 2.6E-06 44.2 8.7 84 112-220 23-108 (211)
320 cd04725 OMP_decarboxylase_like 95.4 0.44 9.5E-06 40.9 12.4 141 18-215 59-213 (216)
321 PRK05718 keto-hydroxyglutarate 95.3 1 2.2E-05 38.8 14.5 47 163-211 144-191 (212)
322 PRK05265 pyridoxine 5'-phospha 95.3 0.23 5.1E-06 43.2 10.4 41 171-211 182-222 (239)
323 COG0135 TrpF Phosphoribosylant 95.2 0.4 8.7E-06 41.1 11.5 141 11-209 34-190 (208)
324 cd06556 ICL_KPHMT Members of t 95.2 0.4 8.7E-06 42.0 11.8 134 25-217 89-230 (240)
325 TIGR02319 CPEP_Pphonmut carbox 95.2 0.87 1.9E-05 41.1 14.2 136 28-206 95-237 (294)
326 PRK01222 N-(5'-phosphoribosyl) 95.2 0.79 1.7E-05 39.2 13.3 36 172-207 153-188 (210)
327 PRK12581 oxaloacetate decarbox 95.1 0.99 2.1E-05 43.4 15.0 135 22-211 105-251 (468)
328 PRK06552 keto-hydroxyglutarate 95.1 0.19 4E-06 43.3 9.2 84 112-220 23-111 (213)
329 PRK12331 oxaloacetate decarbox 95.0 0.86 1.9E-05 43.6 14.4 131 32-211 103-242 (448)
330 PLN02417 dihydrodipicolinate s 95.0 0.87 1.9E-05 40.6 13.6 126 14-192 18-151 (280)
331 cd04740 DHOD_1B_like Dihydroor 95.0 1.3 2.9E-05 39.5 14.9 90 93-201 91-185 (296)
332 PRK06559 nicotinate-nucleotide 94.9 0.53 1.2E-05 42.3 12.0 108 60-206 160-273 (290)
333 COG0284 PyrF Orotidine-5'-phos 94.9 0.96 2.1E-05 39.6 13.3 28 18-48 72-99 (240)
334 KOG3111 D-ribulose-5-phosphate 94.9 0.63 1.4E-05 39.4 11.4 130 15-208 71-203 (224)
335 cd00946 FBP_aldolase_IIA Class 94.9 2.8 6.1E-05 38.7 16.8 152 20-205 105-278 (345)
336 PRK06543 nicotinate-nucleotide 94.9 0.47 1E-05 42.5 11.4 111 60-209 152-272 (281)
337 PRK14042 pyruvate carboxylase 94.8 1 2.2E-05 44.6 14.6 135 22-211 96-242 (596)
338 TIGR01305 GMP_reduct_1 guanosi 94.8 0.49 1.1E-05 43.4 11.5 69 117-202 109-178 (343)
339 cd02810 DHOD_DHPD_FMN Dihydroo 94.8 2 4.3E-05 38.2 15.4 91 93-202 100-196 (289)
340 COG0069 GltB Glutamate synthas 94.7 0.47 1E-05 45.5 11.7 143 37-206 233-407 (485)
341 PRK08227 autoinducer 2 aldolas 94.7 2.3 5E-05 37.8 15.3 127 31-210 100-234 (264)
342 PRK11320 prpB 2-methylisocitra 94.7 1.6 3.4E-05 39.4 14.4 137 28-206 96-238 (292)
343 PLN02460 indole-3-glycerol-pho 94.6 1.3 2.8E-05 40.7 13.8 40 176-216 291-331 (338)
344 PF03102 NeuB: NeuB family; I 94.6 0.42 9.2E-06 41.9 10.3 141 32-212 3-156 (241)
345 PRK09140 2-dehydro-3-deoxy-6-p 94.6 0.29 6.2E-06 41.9 9.0 81 112-217 20-102 (206)
346 PF00478 IMPDH: IMP dehydrogen 94.5 0.38 8.2E-06 44.5 10.3 66 117-202 110-177 (352)
347 TIGR03569 NeuB_NnaB N-acetylne 94.5 0.75 1.6E-05 42.2 12.1 126 33-197 24-161 (329)
348 TIGR03586 PseI pseudaminic aci 94.5 1.3 2.8E-05 40.6 13.6 131 31-200 23-166 (327)
349 cd04742 NPD_FabD 2-Nitropropan 94.5 0.28 6.1E-06 46.4 9.5 43 173-216 219-267 (418)
350 TIGR02814 pfaD_fam PfaD family 94.5 0.25 5.5E-06 47.0 9.2 43 173-216 224-272 (444)
351 cd04727 pdxS PdxS is a subunit 94.5 0.46 1E-05 42.4 10.3 121 28-202 18-139 (283)
352 TIGR02319 CPEP_Pphonmut carbox 94.4 3.6 7.9E-05 37.1 16.2 160 28-219 26-200 (294)
353 COG1954 GlpP Glycerol-3-phosph 94.4 0.61 1.3E-05 38.6 10.1 57 120-200 114-171 (181)
354 cd00429 RPE Ribulose-5-phospha 94.4 0.92 2E-05 38.0 11.7 74 26-141 13-88 (211)
355 PRK14040 oxaloacetate decarbox 94.3 2 4.3E-05 42.6 15.5 128 33-212 105-244 (593)
356 PRK11320 prpB 2-methylisocitra 94.3 3.2 7E-05 37.4 15.5 159 28-218 27-200 (292)
357 COG0413 PanB Ketopantoate hydr 94.3 0.91 2E-05 40.0 11.5 77 113-218 160-236 (268)
358 cd00452 KDPG_aldolase KDPG and 94.2 0.57 1.2E-05 39.2 10.1 81 112-217 14-95 (190)
359 PRK05096 guanosine 5'-monophos 94.2 0.59 1.3E-05 42.9 10.7 38 161-199 138-176 (346)
360 cd02809 alpha_hydroxyacid_oxid 94.2 0.8 1.7E-05 41.2 11.7 84 92-201 116-199 (299)
361 PRK14041 oxaloacetate decarbox 94.2 1.6 3.5E-05 42.0 14.1 138 22-211 95-241 (467)
362 cd00377 ICL_PEPM Members of th 94.2 3.6 7.8E-05 36.0 16.8 161 29-219 20-195 (243)
363 cd00953 KDG_aldolase KDG (2-ke 94.1 4 8.6E-05 36.4 16.1 120 27-193 22-148 (279)
364 TIGR02317 prpB methylisocitrat 94.1 4.2 9.1E-05 36.6 16.7 159 28-219 23-196 (285)
365 cd07948 DRE_TIM_HCS Saccharomy 94.0 1.6 3.4E-05 38.7 12.9 134 30-200 76-214 (262)
366 PRK07107 inosine 5-monophospha 94.0 0.28 6.2E-06 47.5 8.7 69 114-201 241-311 (502)
367 PF00834 Ribul_P_3_epim: Ribul 94.0 0.1 2.2E-06 44.5 5.0 117 34-207 76-199 (201)
368 PF07745 Glyco_hydro_53: Glyco 94.0 5 0.00011 36.9 16.8 135 13-179 97-235 (332)
369 PRK09196 fructose-1,6-bisphosp 93.9 1.7 3.6E-05 40.2 13.1 149 31-205 91-280 (347)
370 PRK09282 pyruvate carboxylase 93.9 1.7 3.6E-05 43.1 14.0 134 31-213 102-244 (592)
371 PRK12331 oxaloacetate decarbox 93.9 4.1 8.9E-05 39.0 16.1 95 12-141 20-117 (448)
372 PLN00191 enolase 93.8 1.8 4E-05 41.5 13.7 69 112-202 296-367 (457)
373 TIGR01521 FruBisAldo_II_B fruc 93.8 3.6 7.8E-05 38.0 15.0 149 31-205 89-278 (347)
374 PLN02495 oxidoreductase, actin 93.8 1.3 2.8E-05 41.5 12.4 111 77-205 100-217 (385)
375 PRK09016 quinolinate phosphori 93.8 0.98 2.1E-05 40.8 11.2 111 60-209 172-287 (296)
376 PRK13399 fructose-1,6-bisphosp 93.8 4.4 9.6E-05 37.4 15.6 147 31-203 91-278 (347)
377 cd04726 KGPDC_HPS 3-Keto-L-gul 93.8 3.1 6.7E-05 34.7 13.7 91 77-202 39-133 (202)
378 cd00381 IMPDH IMPDH: The catal 93.7 0.49 1.1E-05 43.3 9.4 66 116-201 95-162 (325)
379 PRK13957 indole-3-glycerol-pho 93.7 4.5 9.9E-05 35.6 15.8 50 165-216 192-244 (247)
380 PRK06978 nicotinate-nucleotide 93.7 1 2.2E-05 40.7 11.1 112 60-210 169-285 (294)
381 PRK05581 ribulose-phosphate 3- 93.7 1.4 3E-05 37.4 11.6 74 26-141 17-92 (220)
382 cd04743 NPD_PKS 2-Nitropropane 93.7 0.44 9.6E-06 43.5 8.9 39 173-211 165-211 (320)
383 cd06557 KPHMT-like Ketopantoat 93.7 0.84 1.8E-05 40.4 10.4 78 113-219 157-234 (254)
384 cd00311 TIM Triosephosphate is 93.7 0.21 4.6E-06 43.8 6.6 43 173-216 199-241 (242)
385 PRK00311 panB 3-methyl-2-oxobu 93.7 0.89 1.9E-05 40.4 10.6 78 113-219 160-237 (264)
386 PRK06015 keto-hydroxyglutarate 93.7 4 8.6E-05 34.8 14.7 47 163-211 133-180 (201)
387 PRK12999 pyruvate carboxylase; 93.7 3.1 6.7E-05 44.5 16.2 143 23-211 628-779 (1146)
388 PRK13802 bifunctional indole-3 93.7 2 4.4E-05 43.3 14.2 51 165-216 201-254 (695)
389 PF00682 HMGL-like: HMGL-like 93.6 2.4 5.3E-05 36.4 13.1 140 28-204 70-215 (237)
390 TIGR03128 RuMP_HxlA 3-hexulose 93.6 3.1 6.7E-05 34.9 13.5 98 75-205 36-136 (206)
391 PLN02274 inosine-5'-monophosph 93.5 0.26 5.7E-06 47.8 7.6 69 115-202 248-317 (505)
392 PRK07259 dihydroorotate dehydr 93.5 5.3 0.00012 35.8 15.7 143 32-201 30-188 (301)
393 PRK06106 nicotinate-nucleotide 93.5 1.8 4E-05 38.8 12.3 108 60-206 157-270 (281)
394 PRK07114 keto-hydroxyglutarate 93.4 0.57 1.2E-05 40.6 8.7 81 112-217 25-110 (222)
395 PRK08385 nicotinate-nucleotide 93.4 1.4 3E-05 39.5 11.4 109 61-206 148-263 (278)
396 TIGR02321 Pphn_pyruv_hyd phosp 93.4 5.9 0.00013 35.7 16.8 163 28-220 25-203 (290)
397 PRK07084 fructose-bisphosphate 93.3 4.3 9.3E-05 37.1 14.4 121 70-203 120-269 (321)
398 PF13714 PEP_mutase: Phosphoen 93.2 5.5 0.00012 34.8 14.8 154 28-217 19-188 (238)
399 PRK13958 N-(5'-phosphoribosyl) 93.2 4.1 8.8E-05 34.8 13.6 38 11-48 33-85 (207)
400 PLN02746 hydroxymethylglutaryl 93.1 7.1 0.00015 36.1 15.9 142 29-200 125-271 (347)
401 PRK14041 oxaloacetate decarbox 93.1 6.1 0.00013 38.1 15.9 95 12-141 19-116 (467)
402 TIGR01306 GMP_reduct_2 guanosi 92.9 1.9 4.2E-05 39.4 11.8 41 161-202 124-165 (321)
403 COG2513 PrpB PEP phosphonomuta 92.9 5.7 0.00012 35.7 14.4 160 28-220 28-202 (289)
404 PRK05286 dihydroorotate dehydr 92.9 7.5 0.00016 35.7 15.9 154 28-203 72-246 (344)
405 PRK06852 aldolase; Validated 92.9 5.9 0.00013 36.0 14.7 81 112-210 186-273 (304)
406 PRK14567 triosephosphate isome 92.8 0.38 8.3E-06 42.5 6.9 43 173-216 202-244 (253)
407 PRK06096 molybdenum transport 92.8 2.2 4.8E-05 38.3 11.9 111 60-207 150-269 (284)
408 TIGR01108 oadA oxaloacetate de 92.8 3.8 8.3E-05 40.5 14.5 131 32-211 98-237 (582)
409 PRK11858 aksA trans-homoaconit 92.8 3.3 7.1E-05 38.7 13.4 133 31-199 81-217 (378)
410 TIGR01334 modD putative molybd 92.7 1.3 2.9E-05 39.6 10.3 95 78-209 175-270 (277)
411 PLN02424 ketopantoate hydroxym 92.7 7.9 0.00017 35.5 16.4 106 12-141 19-135 (332)
412 PRK08318 dihydropyrimidine deh 92.7 9 0.00019 36.1 16.6 83 112-200 111-198 (420)
413 PRK00311 panB 3-methyl-2-oxobu 92.7 6.6 0.00014 34.9 14.6 147 28-220 25-196 (264)
414 cd08210 RLP_RrRLP Ribulose bis 92.7 2.3 5E-05 39.6 12.2 84 11-127 134-218 (364)
415 PTZ00314 inosine-5'-monophosph 92.6 0.85 1.8E-05 44.2 9.5 67 116-202 242-310 (495)
416 cd08205 RuBisCO_IV_RLP Ribulos 92.5 1.8 4E-05 40.2 11.3 78 24-127 145-223 (367)
417 COG2896 MoaA Molybdenum cofact 92.5 1.3 2.9E-05 40.4 10.1 91 1-141 29-119 (322)
418 PF04131 NanE: Putative N-acet 92.5 2.2 4.7E-05 36.0 10.5 114 28-202 2-119 (192)
419 TIGR02660 nifV_homocitr homoci 92.5 3.2 7E-05 38.5 12.9 133 31-200 78-215 (365)
420 PF04309 G3P_antiterm: Glycero 92.4 0.18 3.8E-06 42.1 4.0 64 119-206 109-173 (175)
421 PF01081 Aldolase: KDPG and KH 92.4 1.4 3.1E-05 37.4 9.6 46 163-209 137-183 (196)
422 cd07938 DRE_TIM_HMGL 3-hydroxy 92.4 5.1 0.00011 35.6 13.6 141 29-200 77-223 (274)
423 TIGR01520 FruBisAldo_II_A fruc 92.1 5.4 0.00012 37.0 13.7 122 70-205 147-290 (357)
424 PRK02412 aroD 3-dehydroquinate 92.1 7.8 0.00017 34.0 16.3 145 26-211 29-181 (253)
425 PRK07896 nicotinate-nucleotide 92.1 2.5 5.5E-05 38.0 11.3 111 60-207 163-279 (289)
426 PRK06843 inosine 5-monophospha 92.1 1 2.2E-05 42.5 9.1 67 116-202 154-222 (404)
427 PRK07807 inosine 5-monophospha 92.1 0.94 2E-05 43.7 9.0 70 115-203 227-297 (479)
428 cd02922 FCB2_FMN Flavocytochro 91.9 3.1 6.8E-05 38.4 12.0 40 162-202 202-241 (344)
429 cd07939 DRE_TIM_NifV Streptomy 91.9 4.8 0.0001 35.3 12.8 133 30-199 74-211 (259)
430 TIGR01302 IMP_dehydrog inosine 91.9 0.89 1.9E-05 43.5 8.7 69 115-202 224-293 (450)
431 cd07945 DRE_TIM_CMS Leptospira 91.8 4.7 0.0001 36.1 12.7 137 30-200 79-221 (280)
432 PF01487 DHquinase_I: Type I 3 91.8 1.5 3.3E-05 37.5 9.3 139 27-211 12-159 (224)
433 cd06557 KPHMT-like Ketopantoat 91.8 8.8 0.00019 33.9 15.1 147 28-220 22-193 (254)
434 PF09370 TIM-br_sig_trns: TIM- 91.7 3.1 6.7E-05 36.9 11.1 143 29-206 26-181 (268)
435 cd03174 DRE_TIM_metallolyase D 91.7 4.3 9.2E-05 35.3 12.3 140 28-202 77-222 (265)
436 PRK05437 isopentenyl pyrophosp 91.7 2.4 5.3E-05 39.2 11.1 108 78-202 107-217 (352)
437 PRK05692 hydroxymethylglutaryl 91.6 7.1 0.00015 35.0 13.8 138 29-199 83-228 (287)
438 cd04722 TIM_phosphate_binding 91.4 5.5 0.00012 32.1 11.9 133 25-206 12-147 (200)
439 COG0191 Fba Fructose/tagatose 91.0 6.5 0.00014 35.3 12.5 131 30-196 90-229 (286)
440 cd03332 LMO_FMN L-Lactate 2-mo 91.0 4.7 0.0001 37.8 12.2 41 161-202 241-281 (383)
441 PLN02535 glycolate oxidase 90.9 4.9 0.00011 37.4 12.3 41 161-202 211-251 (364)
442 PF02548 Pantoate_transf: Keto 90.9 2.7 6E-05 37.2 10.0 102 24-180 93-204 (261)
443 TIGR02090 LEU1_arch isopropylm 90.9 5.8 0.00013 36.8 12.8 134 29-199 75-213 (363)
444 cd02940 DHPD_FMN Dihydropyrimi 90.8 12 0.00025 33.7 16.3 84 112-201 111-199 (299)
445 PRK13397 3-deoxy-7-phosphohept 90.8 3.4 7.3E-05 36.4 10.5 97 111-220 26-124 (250)
446 PRK07028 bifunctional hexulose 90.8 14 0.00029 35.1 15.5 132 26-217 17-159 (430)
447 PRK11572 copper homeostasis pr 90.8 10 0.00022 33.4 13.4 130 15-201 67-197 (248)
448 cd00405 PRAI Phosphoribosylant 90.7 6 0.00013 33.3 11.8 112 30-203 11-128 (203)
449 TIGR01037 pyrD_sub1_fam dihydr 90.7 12 0.00026 33.5 15.1 91 93-201 92-188 (300)
450 KOG1799 Dihydropyrimidine dehy 90.7 0.41 9E-06 43.9 4.8 158 24-208 217-391 (471)
451 PLN02363 phosphoribosylanthran 90.7 8.2 0.00018 34.1 12.9 37 173-209 199-235 (256)
452 PTZ00081 enolase; Provisional 90.7 3.2 7E-05 39.6 11.1 67 113-201 284-354 (439)
453 PF05853 DUF849: Prokaryotic p 90.7 3.7 7.9E-05 36.6 10.8 59 22-97 23-81 (272)
454 cd07941 DRE_TIM_LeuA3 Desulfob 90.7 8.5 0.00018 34.2 13.2 137 30-200 83-225 (273)
455 cd04737 LOX_like_FMN L-Lactate 90.6 5.8 0.00012 36.8 12.4 40 161-201 209-248 (351)
456 PLN02979 glycolate oxidase 90.6 5.9 0.00013 36.9 12.3 40 162-202 212-251 (366)
457 PTZ00170 D-ribulose-5-phosphat 90.6 2.8 6E-05 36.3 9.8 123 26-200 20-143 (228)
458 PLN02858 fructose-bisphosphate 90.4 11 0.00024 41.2 15.9 138 31-205 1185-1334(1378)
459 PF13714 PEP_mutase: Phosphoen 90.2 12 0.00026 32.7 14.3 135 26-206 86-223 (238)
460 PRK14565 triosephosphate isome 90.2 0.95 2.1E-05 39.6 6.5 53 163-216 178-231 (237)
461 PRK09250 fructose-bisphosphate 90.1 15 0.00033 33.9 14.4 89 113-209 216-325 (348)
462 PRK05458 guanosine 5'-monophos 90.1 2.1 4.5E-05 39.3 8.9 69 117-202 99-168 (326)
463 COG0800 Eda 2-keto-3-deoxy-6-p 90.1 11 0.00025 32.3 13.5 32 174-206 154-185 (211)
464 PF03932 CutC: CutC family; I 90.0 2.6 5.6E-05 36.0 8.8 129 15-199 66-196 (201)
465 PLN02493 probable peroxisomal 89.9 6.6 0.00014 36.6 12.1 41 161-202 212-252 (367)
466 TIGR02708 L_lactate_ox L-lacta 89.7 8 0.00017 36.1 12.5 39 162-201 217-255 (367)
467 TIGR01303 IMP_DH_rel_1 IMP deh 89.7 1.9 4.2E-05 41.5 8.8 66 115-200 225-292 (475)
468 COG1794 RacX Aspartate racemas 89.6 9.6 0.00021 33.1 12.0 66 68-141 8-83 (230)
469 TIGR02127 pyrF_sub2 orotidine 89.4 15 0.00032 32.6 14.5 143 18-212 96-254 (261)
470 PRK12344 putative alpha-isopro 89.4 11 0.00023 36.9 13.8 135 32-199 92-230 (524)
471 PRK05567 inosine 5'-monophosph 89.2 2 4.4E-05 41.4 8.6 68 116-202 229-297 (486)
472 PTZ00333 triosephosphate isome 89.2 1.7 3.6E-05 38.5 7.3 42 173-215 207-248 (255)
473 TIGR01235 pyruv_carbox pyruvat 89.1 19 0.00042 38.6 16.3 140 21-206 624-768 (1143)
474 TIGR03217 4OH_2_O_val_ald 4-hy 89.1 18 0.00039 33.2 17.0 129 29-209 91-231 (333)
475 PLN02716 nicotinate-nucleotide 89.0 8.1 0.00018 35.1 11.7 32 174-206 263-294 (308)
476 PRK13384 delta-aminolevulinic 89.0 14 0.00031 33.6 13.1 171 24-219 60-265 (322)
477 KOG0538 Glycolate oxidase [Ene 88.8 1.9 4.1E-05 39.1 7.3 72 121-207 238-312 (363)
478 PRK00042 tpiA triosephosphate 88.8 1.1 2.3E-05 39.5 5.8 42 174-216 204-245 (250)
479 PRK05198 2-dehydro-3-deoxyphos 88.7 5 0.00011 35.6 9.9 102 111-220 21-126 (264)
480 PRK08195 4-hyroxy-2-oxovalerat 88.4 20 0.00044 32.9 14.8 124 30-204 93-228 (337)
481 PLN03033 2-dehydro-3-deoxyphos 88.2 6.5 0.00014 35.3 10.3 98 111-220 27-132 (290)
482 COG0149 TpiA Triosephosphate i 88.1 16 0.00034 32.3 12.6 44 173-216 202-245 (251)
483 TIGR00977 LeuA_rel 2-isopropyl 88.1 10 0.00022 37.2 12.5 136 32-200 88-228 (526)
484 PRK12399 tagatose 1,6-diphosph 88.1 20 0.00044 32.7 13.6 163 20-209 102-282 (324)
485 PRK12457 2-dehydro-3-deoxyphos 88.0 6.8 0.00015 35.0 10.3 98 111-220 27-132 (281)
486 TIGR01232 lacD tagatose 1,6-di 88.0 18 0.00038 33.1 13.1 45 164-209 229-283 (325)
487 TIGR01108 oadA oxaloacetate de 87.9 26 0.00056 34.8 15.4 94 13-141 16-112 (582)
488 cd01571 NAPRTase_B Nicotinate 87.9 10 0.00022 34.3 11.8 35 174-209 246-280 (302)
489 PRK07114 keto-hydroxyglutarate 87.8 17 0.00038 31.4 12.8 44 163-207 147-193 (222)
490 PRK04161 tagatose 1,6-diphosph 87.7 17 0.00037 33.3 12.9 42 168-209 237-284 (329)
491 cd07940 DRE_TIM_IPMS 2-isoprop 87.6 19 0.00041 31.7 14.5 132 31-199 75-218 (268)
492 cd07937 DRE_TIM_PC_TC_5S Pyruv 87.5 14 0.00031 32.7 12.3 120 32-199 98-221 (275)
493 cd03309 CmuC_like CmuC_like. P 87.5 12 0.00025 34.3 11.9 116 19-183 145-265 (321)
494 PRK02227 hypothetical protein; 87.5 19 0.00041 31.5 15.1 127 29-202 11-151 (238)
495 COG0710 AroD 3-dehydroquinate 87.4 19 0.00041 31.4 13.3 86 25-140 14-99 (231)
496 COG0119 LeuA Isopropylmalate/h 87.3 25 0.00055 33.3 14.4 137 26-199 77-220 (409)
497 PLN02561 triosephosphate isome 87.3 2.2 4.8E-05 37.7 6.9 42 173-216 204-245 (253)
498 PRK07455 keto-hydroxyglutarate 87.2 4.3 9.3E-05 34.0 8.3 70 112-203 22-92 (187)
499 KOG1606 Stationary phase-induc 87.0 1.5 3.2E-05 37.7 5.3 44 173-217 207-253 (296)
500 COG4981 Enoyl reductase domain 87.0 4.9 0.00011 39.2 9.3 112 81-208 113-259 (717)
No 1
>PLN02411 12-oxophytodienoate reductase
Probab=100.00 E-value=2.6e-63 Score=460.60 Aligned_cols=243 Identities=83% Similarity=1.342 Sum_probs=200.2
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
+..|++||.+||+++|++|++||+||++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||++
T Consensus 149 ~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~ 228 (391)
T PLN02411 149 YPKPRALETSEIPEVVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSA 228 (391)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHH
Q 025135 89 IGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTW 168 (257)
Q Consensus 89 vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (257)
||++.|++|||+.+++.+..+.++.++..++++.|++.+...+..+||||++.+.+.......+...........+.+.|
T Consensus 229 vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~i 308 (391)
T PLN02411 229 IGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTL 308 (391)
T ss_pred cCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHH
Confidence 99888999999865544332334567788889988875211111299999997654321110000000111223456789
Q ss_pred HHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCCCCCccccccccCCCCCCcccccCCcccc
Q 025135 169 RRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLSKAN 248 (257)
Q Consensus 169 r~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 248 (257)
|+.+++|||++|+++++.|+++|++|.+|+|+|||++|+||||++|+++|++++++++.+||++++.+||+|||+++
T Consensus 309 k~~v~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~g~~l~~~~~~~~~~~~~~~gy~~~p~~~--- 385 (391)
T PLN02411 309 RRAYQGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKLNAPLNKYIRKTFYTQDPVVGYTDYPFLS--- 385 (391)
T ss_pred HHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhcCCCCCCCChhheeCCCCCCCCCcccccc---
Confidence 99999999999999989999999999999999999999999999999999999999999999754446999999885
Q ss_pred cccccccCC
Q 025135 249 KGQATLSRL 257 (257)
Q Consensus 249 ~~~~~~~~~ 257 (257)
.|.|||
T Consensus 386 ---~~~~~~ 391 (391)
T PLN02411 386 ---QPFSRL 391 (391)
T ss_pred ---cccccC
Confidence 566765
No 2
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=100.00 E-value=2.4e-60 Score=436.96 Aligned_cols=219 Identities=39% Similarity=0.668 Sum_probs=192.2
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
...|++||.+||++||++|++||++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||++
T Consensus 143 ~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~ 222 (362)
T PRK10605 143 TSTPRALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAE 222 (362)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEEccCCCCCCCCCCCcHHH-HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH
Q 025135 89 IGADRVGVRMSPAIDHLDATDSDPLGL-GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 89 vg~~~v~vrls~~~~~~~~~~~~~~~~-~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
+|++.|++|||+.+.++....+.+.++ +.++++.|++.| +|||+++.+.+... .+....+.+.
T Consensus 223 vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~g------iD~i~vs~~~~~~~----------~~~~~~~~~~ 286 (362)
T PRK10605 223 WGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRG------IAYLHMSEPDWAGG----------EPYSDAFREK 286 (362)
T ss_pred cCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcC------CCEEEeccccccCC----------ccccHHHHHH
Confidence 998889999998642222222345666 799999999999 99999987533211 1122456678
Q ss_pred HHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCCCCCccccccccCCCCCCcccccCC
Q 025135 168 WRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFL 244 (257)
Q Consensus 168 ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~ 244 (257)
||+.+++||+++|++|++.|+++|++|.||+|+|||++|+||+|++|+++|.++++++..++|.++. .||++||.+
T Consensus 287 ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~ 362 (362)
T PRK10605 287 VRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQRKAELNPQRPESFYGGGA-EGYTDYPTL 362 (362)
T ss_pred HHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHhcCCCCCCCChhhhcCCCC-CCCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999997543 799999954
No 3
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=100.00 E-value=2e-58 Score=422.07 Aligned_cols=225 Identities=40% Similarity=0.641 Sum_probs=188.4
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
..+||+||++||+++|++|++||+||++|||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||++
T Consensus 133 ~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~ 212 (363)
T COG1902 133 RATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREA 212 (363)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH
Q 025135 89 IGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 89 vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
||++ +|++|||+.+.+.+ .+.+.+++.++++.|++.|. +||||++++.......... ........+...
T Consensus 213 vg~~~~vg~Rls~~d~~~~--~g~~~~e~~~la~~L~~~G~-----~d~i~vs~~~~~~~~~~~~---~~~~~~~~~a~~ 282 (363)
T COG1902 213 VGADFPVGVRLSPDDFFDG--GGLTIEEAVELAKALEEAGL-----VDYIHVSEGGYERGGTITV---SGPGYQVEFAAR 282 (363)
T ss_pred hCCCceEEEEECccccCCC--CCCCHHHHHHHHHHHHhcCC-----ccEEEeecccccCCCCccc---cccchhHHHHHH
Confidence 9998 79999998643132 24568899999999999993 5999999876643211110 012344566777
Q ss_pred HHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCCCCCccccccccCCCCCCcccccCCc
Q 025135 168 WRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYPFLS 245 (257)
Q Consensus 168 ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~ 245 (257)
+|+...+|||++|++ +++.|+++|++|.+|+|+|||+||+||+|++|+++|+++ .++..++...-..||++|+...
T Consensus 283 i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~ 359 (363)
T COG1902 283 IKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGREL--EIRPCIYCNQYCLGYTDYPLLK 359 (363)
T ss_pred HHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcCCCc--cccccccccchhhhccccccch
Confidence 999999999999998 899999999999999999999999999999999999986 2223333322347777777653
No 4
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=1.4e-55 Score=402.09 Aligned_cols=203 Identities=56% Similarity=0.892 Sum_probs=181.4
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
+..|++||.+||+++|++|++||++|++|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||++
T Consensus 136 ~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~ 215 (338)
T cd02933 136 YPTPRALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEA 215 (338)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHH
Q 025135 89 IGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTW 168 (257)
Q Consensus 89 vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (257)
+|.++|++|||+.+...+...+.+.+++.++++.|++.| +|+|+++.+.+.... ...+...++.|
T Consensus 216 vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g------~d~i~vs~g~~~~~~---------~~~~~~~~~~i 280 (338)
T cd02933 216 IGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRG------LAYLHLVEPRVAGNP---------EDQPPDFLDFL 280 (338)
T ss_pred hCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcC------CcEEEEecCCCCCcc---------cccchHHHHHH
Confidence 998789999998643332223456788999999999999 999999766443211 23445778889
Q ss_pred HHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCCCCCccc
Q 025135 169 RRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVR 226 (257)
Q Consensus 169 r~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~~~~~~~ 226 (257)
|+.+++||+++|++++++|+++|++|.||+|+|||++++||||++|+++|+++.+|++
T Consensus 281 k~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~g~~~~~~~~ 338 (338)
T cd02933 281 RKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDLVERLKNGAPLNEYDR 338 (338)
T ss_pred HHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999988874
No 5
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=100.00 E-value=2.5e-55 Score=401.50 Aligned_cols=202 Identities=37% Similarity=0.562 Sum_probs=160.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhC
Q 025135 11 NPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIG 90 (257)
Q Consensus 11 ~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg 90 (257)
.|++||.+||++||++|++||++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|
T Consensus 135 ~~~~mt~~eI~~ii~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg 214 (341)
T PF00724_consen 135 PPREMTEEEIEEIIEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVG 214 (341)
T ss_dssp EEEE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeeCCHHHHHHHHHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCC--cCCCCCCCchhHHHHHHH
Q 025135 91 AD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQ--TESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 91 ~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 167 (257)
++ +|++|||+.+.+.++ .+.++..++++.+++.| +++++++...+..... ..............++..
T Consensus 215 ~d~~v~~Rls~~~~~~~g---~~~~e~~~~~~~~~~~~------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 285 (341)
T PF00724_consen 215 PDFPVGVRLSPDDFVEGG---ITLEETIEIAKLLEELG------VDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEA 285 (341)
T ss_dssp GGGEEEEEEETTCSSTTS---HHSHHHHHHHHHHHHHH------HTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHH
T ss_pred CCceEEEEEeeecccCCC---CchHHHHHHHHHHHHHh------hhhccccccccccccccccccccccccchhhhhhhh
Confidence 98 699999987544432 34567788899999998 5555544322211100 000000011233467788
Q ss_pred HHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCCC
Q 025135 168 WRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPL 221 (257)
Q Consensus 168 ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~~ 221 (257)
+|+.+++|||++|++ +++.|+++|++|.||+|+|||++|+||+|++|+++|++.
T Consensus 286 ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~~g~~d 340 (341)
T PF00724_consen 286 IKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAREGRED 340 (341)
T ss_dssp HHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHHHTTGG
T ss_pred hhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHHcCCcc
Confidence 999999999999999 688899999999999999999999999999999999864
No 6
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=4.4e-54 Score=394.29 Aligned_cols=204 Identities=31% Similarity=0.448 Sum_probs=174.9
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHh
Q 025135 10 PNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAI 89 (257)
Q Consensus 10 ~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~v 89 (257)
..|++||.+||+++|++|++||++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++
T Consensus 129 ~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~v 208 (361)
T cd04747 129 PVGREMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAV 208 (361)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-eEEEEEccCCCCCCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH
Q 025135 90 GAD-RVGVRMSPAIDHLDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 90 g~~-~v~vrls~~~~~~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
|++ +|++|||+++..+.. ..+.+.+++.++++.|++.| +|+||++.+.+..+.. ........+.
T Consensus 209 G~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~g------vd~i~vs~g~~~~~~~--------~~~~~~~~~~ 274 (361)
T cd04747 209 GPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAG------VDIFHCSTRRFWEPEF--------EGSELNLAGW 274 (361)
T ss_pred CCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcC------CCEEEecCCCccCCCc--------CccchhHHHH
Confidence 988 899999975321111 12356788999999999999 9999998754322210 1112345677
Q ss_pred HHHHhCCcEEEeCCC-------------------CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCC--CCCccc
Q 025135 168 WRRSYQGTFICSGGF-------------------TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP--LNKYVR 226 (257)
Q Consensus 168 ir~~~~~pvi~~G~i-------------------t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~--~~~~~~ 226 (257)
+|+.+++||+++|++ |+++++++|++|.||+|++||++|+||||++|+++|+. ++++|+
T Consensus 275 ~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~g~~~~Ir~~~~ 354 (361)
T cd04747 275 TKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVREGRLDELIPFSR 354 (361)
T ss_pred HHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHcCCcccccCCCH
Confidence 899999999999997 78999999999999999999999999999999999975 555554
Q ss_pred c
Q 025135 227 K 227 (257)
Q Consensus 227 ~ 227 (257)
.
T Consensus 355 ~ 355 (361)
T cd04747 355 A 355 (361)
T ss_pred H
Confidence 3
No 7
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.4e-53 Score=394.85 Aligned_cols=205 Identities=30% Similarity=0.453 Sum_probs=175.4
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccc-cchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 10 PNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAH-GYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 10 ~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~-GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
..|++||.+||+++|++|++||++|++|||||||||+|| ||||+|||||.+|+|||+||||+|||+||++|||++||++
T Consensus 135 ~~p~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~ 214 (382)
T cd02931 135 ITCRELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKAR 214 (382)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hCCC-eEEEEEccCCCCCC-----------CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCC
Q 025135 89 IGAD-RVGVRMSPAIDHLD-----------ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPG 156 (257)
Q Consensus 89 vg~~-~v~vrls~~~~~~~-----------~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~ 156 (257)
+|++ +|++||++.+...+ ...+.+.+++.++++.|++.| +|||+++.+.+.......+....
T Consensus 215 ~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~g------vD~l~vs~g~~~~~~~~~~~~~~ 288 (382)
T cd02931 215 CGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAG------YDALDVDAGSYDAWYWNHPPMYQ 288 (382)
T ss_pred cCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhC------CCEEEeCCCCCcccccccCCccC
Confidence 9987 89999997431111 012346788999999999999 99999997764322111111111
Q ss_pred CchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCC
Q 025135 157 TEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP 220 (257)
Q Consensus 157 ~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~ 220 (257)
....+..+++.+|+.+++||+++|++ ++++++++|++|.||+|+|||++++||||++|+++|+.
T Consensus 289 ~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~ 353 (382)
T cd02931 289 KKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRRGRF 353 (382)
T ss_pred CcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHcCCc
Confidence 22344567788999999999999999 89999999999999999999999999999999999974
No 8
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=100.00 E-value=1.6e-53 Score=393.12 Aligned_cols=201 Identities=27% Similarity=0.370 Sum_probs=171.8
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
...|++||.+||+++|++|++||++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||++
T Consensus 134 ~~~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~ 213 (370)
T cd02929 134 PVQAREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDA 213 (370)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH
Q 025135 89 IGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 89 vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
+|++ +|++||++.+.+.++ +..+.+++.++++.|++. +|+++++.+.+....... .......+...++.
T Consensus 214 vg~~~~v~vRls~~~~~~~~-g~~~~~e~~~~~~~l~~~-------~D~i~vs~g~~~~~~~~~--~~~~~~~~~~~~~~ 283 (370)
T cd02929 214 VGDDCAVATRFSVDELIGPG-GIESEGEGVEFVEMLDEL-------PDLWDVNVGDWANDGEDS--RFYPEGHQEPYIKF 283 (370)
T ss_pred cCCCceEEEEecHHHhcCCC-CCCCHHHHHHHHHHHHhh-------CCEEEecCCCcccccccc--ccCCccccHHHHHH
Confidence 9987 899999986433322 124678889999999875 688888765433211100 11112234567788
Q ss_pred HHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 168 WRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 168 ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
+|+.+++|||++|++ ++++++++|++|.+|+|++||++|+||||++|+++|+
T Consensus 284 ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~ 336 (370)
T cd02929 284 VKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIREGR 336 (370)
T ss_pred HHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHHcCC
Confidence 999999999999999 8999999999999999999999999999999999996
No 9
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2.7e-53 Score=387.75 Aligned_cols=201 Identities=32% Similarity=0.529 Sum_probs=173.3
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
+..|++||.+||++++++|++||++|++|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||++
T Consensus 133 ~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~a 212 (338)
T cd04733 133 FGKPRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAA 212 (338)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCc---CCCCCCCchhHHHH
Q 025135 89 IGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQT---ESGRPGTEDEEAQL 164 (257)
Q Consensus 89 vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~---~~~~~~~~~~~~~~ 164 (257)
+|++ +|++|+|+. ++... +.+.+++.++++.|++.| +|||+++.+.+...... ..........+...
T Consensus 213 vG~d~~v~vris~~-~~~~~--g~~~eea~~ia~~Le~~G------vd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (338)
T cd04733 213 VGPGFPVGIKLNSA-DFQRG--GFTEEDALEVVEALEEAG------VDLVELSGGTYESPAMAGAKKESTIAREAYFLEF 283 (338)
T ss_pred cCCCCeEEEEEcHH-HcCCC--CCCHHHHHHHHHHHHHcC------CCEEEecCCCCCCccccccccCCccccchhhHHH
Confidence 9987 899999974 33222 245788999999999999 99999987655432211 00000112234566
Q ss_pred HHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcC
Q 025135 165 LRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 165 ~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g 218 (257)
.+.||+.+++||+++|++ ++++++++|++|.||+|+|||++|+||+|++|+++|
T Consensus 284 ~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~~g 338 (338)
T cd04733 284 AEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLLAG 338 (338)
T ss_pred HHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHhcC
Confidence 778999999999999999 899999999999999999999999999999999986
No 10
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=2.2e-53 Score=387.30 Aligned_cols=198 Identities=27% Similarity=0.326 Sum_probs=173.0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
...|++||.+||+++|++|++||++|++|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||++
T Consensus 126 ~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~ 205 (337)
T PRK13523 126 SKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEV 205 (337)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHH
Q 025135 89 IGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTW 168 (257)
Q Consensus 89 vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (257)
+ +.+|++|||+.+ +... +.+.+++.++++.|++.| +|||+++.+.+..... ......+..+++.+
T Consensus 206 ~-~~~v~vRis~~d-~~~~--G~~~~e~~~i~~~l~~~g------vD~i~vs~g~~~~~~~-----~~~~~~~~~~~~~i 270 (337)
T PRK13523 206 W-DGPLFVRISASD-YHPG--GLTVQDYVQYAKWMKEQG------VDLIDVSSGAVVPARI-----DVYPGYQVPFAEHI 270 (337)
T ss_pred c-CCCeEEEecccc-cCCC--CCCHHHHHHHHHHHHHcC------CCEEEeCCCCCCCCCC-----CCCccccHHHHHHH
Confidence 9 458999999853 3222 346788999999999999 9999999875432110 00122245677889
Q ss_pred HHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCCC
Q 025135 169 RRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPL 221 (257)
Q Consensus 169 r~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~~ 221 (257)
|+.+++||+++|++ |+++|+++|++|.||+|+|||++++||||++|++++..-
T Consensus 271 k~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~~~ 324 (337)
T PRK13523 271 REHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKELGF 324 (337)
T ss_pred HhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHcCC
Confidence 99999999999999 899999999999999999999999999999999988653
No 11
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=1.5e-52 Score=383.25 Aligned_cols=204 Identities=31% Similarity=0.451 Sum_probs=175.5
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
...|++||.+||++++++|++||++|++|||||||||+||||||+|||||.+|+|||+||||++||+||++|||++||++
T Consensus 125 ~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~ 204 (343)
T cd04734 125 RAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAA 204 (343)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC---CCcCCCCCCCchhHHHH
Q 025135 89 IGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY---GQTESGRPGTEDEEAQL 164 (257)
Q Consensus 89 vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~---~~~~~~~~~~~~~~~~~ 164 (257)
+|++ +|++||++.+...+ +.+.+++.++++.|+++|. +|+|+++.+++... .......+.....++..
T Consensus 205 vg~~~~v~iRl~~~~~~~~---G~~~~e~~~~~~~l~~~G~-----vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (343)
T cd04734 205 VGPDFIVGIRISGDEDTEG---GLSPDEALEIAARLAAEGL-----IDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPL 276 (343)
T ss_pred cCCCCeEEEEeehhhccCC---CCCHHHHHHHHHHHHhcCC-----CCEEEeCCCCCCcccccccccCCCCCCcchhHHH
Confidence 9987 79999997543322 2457888999999999973 79999987665432 10010111123344677
Q ss_pred HHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCC
Q 025135 165 LRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP 220 (257)
Q Consensus 165 ~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~ 220 (257)
++.+|+.+++||+++|++ |+++++++|++|.||+|++||++++||||++|+++|+.
T Consensus 277 ~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g~~ 333 (343)
T cd04734 277 AARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREGRE 333 (343)
T ss_pred HHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcCCc
Confidence 788999999999999999 99999999999999999999999999999999999985
No 12
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=5.5e-52 Score=380.96 Aligned_cols=197 Identities=36% Similarity=0.559 Sum_probs=170.4
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
+..|++||.+||+++|++|++||++|++|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||++
T Consensus 128 ~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~ 207 (353)
T cd04735 128 AHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEV 207 (353)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hC----CC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHH
Q 025135 89 IG----AD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQ 163 (257)
Q Consensus 89 vg----~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (257)
+| ++ +|++|+|+.+...+ +.+.+++.++++.|++.| +|||+++.+.+...... .......
T Consensus 208 vg~~~~~~~~v~~R~s~~~~~~~---g~~~ee~~~i~~~L~~~G------vD~I~Vs~g~~~~~~~~------~~~~~~~ 272 (353)
T cd04735 208 IDKHADKDFILGYRFSPEEPEEP---GIRMEDTLALVDKLADKG------LDYLHISLWDFDRKSRR------GRDDNQT 272 (353)
T ss_pred hccccCCCceEEEEECcccccCC---CCCHHHHHHHHHHHHHcC------CCEEEeccCcccccccc------CCcchHH
Confidence 98 55 79999997533232 245788899999999999 99999987655432110 0111234
Q ss_pred HHHHHHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCCC
Q 025135 164 LLRTWRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPL 221 (257)
Q Consensus 164 ~~~~ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~~ 221 (257)
..+.+++.+ ++|||++|++ |+++++++|++| ||+|++||++++||||++|+++|++.
T Consensus 273 ~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~g-aD~V~~gR~liadPdl~~k~~~G~~~ 332 (353)
T cd04735 273 IMELVKERIAGRLPLIAVGSINTPDDALEALETG-ADLVAIGRGLLVDPDWVEKIKEGRED 332 (353)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CChHHHhHHHHhCccHHHHHHcCChh
Confidence 556688877 7899999999 899999999996 99999999999999999999999764
No 13
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=100.00 E-value=5.1e-51 Score=374.69 Aligned_cols=202 Identities=32% Similarity=0.440 Sum_probs=173.2
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
...|++||++||++++++|++||++|++|||||||||+||||||+|||||.+|+|||+||||++||+||++|||++||++
T Consensus 121 ~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~ 200 (353)
T cd02930 121 PFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAA 200 (353)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH
Q 025135 89 IGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 89 vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
+|++ +|++||+.. ++... +.+.+++.++++.|+++| +|||+++........... ....+...+....+.
T Consensus 201 vG~d~~v~iRi~~~-D~~~~--g~~~~e~~~i~~~Le~~G------~d~i~vs~g~~e~~~~~~-~~~~~~~~~~~~~~~ 270 (353)
T cd02930 201 VGEDFIIIYRLSML-DLVEG--GSTWEEVVALAKALEAAG------ADILNTGIGWHEARVPTI-ATSVPRGAFAWATAK 270 (353)
T ss_pred cCCCceEEEEeccc-ccCCC--CCCHHHHHHHHHHHHHcC------CCEEEeCCCcCCCCCccc-cccCCchhhHHHHHH
Confidence 9987 799999975 33221 246788999999999999 999999653222111000 001122334566788
Q ss_pred HHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCC
Q 025135 168 WRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP 220 (257)
Q Consensus 168 ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~ 220 (257)
+|+.+++||+++|++ ++++++++|++|.+|+|++||++++||||++|+++|+.
T Consensus 271 ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~g~~ 324 (353)
T cd02930 271 LKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAAGRA 324 (353)
T ss_pred HHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHhCCc
Confidence 999999999999999 99999999999999999999999999999999999974
No 14
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2.5e-49 Score=359.57 Aligned_cols=201 Identities=37% Similarity=0.541 Sum_probs=173.5
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
+..|++||.+||+++|++|++||++|++|||||||||+|||||++|||||.+|+|+|+||||++||+||++|+|++||++
T Consensus 125 ~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~ 204 (327)
T cd02803 125 GEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA 204 (327)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH
Q 025135 89 IGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 89 vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
+|++ +|++|+++.+...+ ..+.+++.++++.|++.| +|||+++.+.+....................++.
T Consensus 205 ~g~d~~i~vris~~~~~~~---g~~~~e~~~la~~l~~~G------~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (327)
T cd02803 205 VGPDFPVGVRLSADDFVPG---GLTLEEAIEIAKALEEAG------VDALHVSGGSYESPPPIIPPPYVPEGYFLELAEK 275 (327)
T ss_pred cCCCceEEEEechhccCCC---CCCHHHHHHHHHHHHHcC------CCEEEeCCCCCcccccccCCCCCCcchhHHHHHH
Confidence 9988 89999998532222 245788999999999999 9999998765543221100000112344567788
Q ss_pred HHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcC
Q 025135 168 WRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 168 ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g 218 (257)
+++.+++||+++|++ |+++++++|++|.+|+|++||++++||+|++|+++|
T Consensus 276 ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~~g 327 (327)
T cd02803 276 IKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAREG 327 (327)
T ss_pred HHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHhcC
Confidence 999999999999999 799999999998899999999999999999999876
No 15
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=100.00 E-value=2.1e-49 Score=361.86 Aligned_cols=196 Identities=35% Similarity=0.487 Sum_probs=170.9
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
+..|++||++||+++|++|++||++|+++||||||||+||||||+|||||.+|+|+|+||||++||+||++|||++||++
T Consensus 138 ~~~p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~ 217 (336)
T cd02932 138 WPTPRELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAV 217 (336)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH
Q 025135 89 IGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 89 vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
+|++ +|++|+++.+ +.+. +.+.+++.++++.|++.| +|||+++.+.+...... ..........++.
T Consensus 218 vG~d~~v~vri~~~~-~~~~--g~~~~e~~~ia~~Le~~g------vd~iev~~g~~~~~~~~----~~~~~~~~~~~~~ 284 (336)
T cd02932 218 WPEDKPLFVRISATD-WVEG--GWDLEDSVELAKALKELG------VDLIDVSSGGNSPAQKI----PVGPGYQVPFAER 284 (336)
T ss_pred cCCCceEEEEEcccc-cCCC--CCCHHHHHHHHHHHHHcC------CCEEEECCCCCCccccc----CCCccccHHHHHH
Confidence 9987 8999999753 2222 235788999999999999 99999986544321100 0012334567788
Q ss_pred HHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 168 WRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 168 ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
+|+.+++||+++|++ ++++++++|++|.||+|++||++++||+|++|+.+
T Consensus 285 ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~~~ 335 (336)
T cd02932 285 IRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLHAAA 335 (336)
T ss_pred HHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHHhh
Confidence 999999999999999 99999999999999999999999999999999875
No 16
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=9e-48 Score=383.77 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=173.6
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
+..|++||++||+++|++|++||++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||++
T Consensus 535 ~~~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~ 614 (765)
T PRK08255 535 SQVPREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAV 614 (765)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH
Q 025135 89 IGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 89 vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
+|++ +|++|||+. ++.+. +.+.++++++++.|++.| +|||+++.+.+....... . .......+.+.
T Consensus 615 ~~~~~~v~~ri~~~-~~~~~--g~~~~~~~~~~~~l~~~g------~d~i~vs~g~~~~~~~~~---~-~~~~~~~~~~~ 681 (765)
T PRK08255 615 WPAEKPMSVRISAH-DWVEG--GNTPDDAVEIARAFKAAG------ADLIDVSSGQVSKDEKPV---Y-GRMYQTPFADR 681 (765)
T ss_pred cCCCCeeEEEEccc-cccCC--CCCHHHHHHHHHHHHhcC------CcEEEeCCCCCCcCCCCC---c-CccccHHHHHH
Confidence 9987 899999985 34332 246788999999999999 999999876543211000 0 11223456678
Q ss_pred HHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCCCC
Q 025135 168 WRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLN 222 (257)
Q Consensus 168 ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~~~ 222 (257)
+|+.+++||+++|++ ++++++++|++|.||+|+|||++|+||+|+.+......+.
T Consensus 682 ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 682 IRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAAEIGYR 737 (765)
T ss_pred HHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHHHHHcCCC
Confidence 999999999999999 8999999999999999999999999999999888765543
No 17
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=2.5e-47 Score=345.59 Aligned_cols=231 Identities=40% Similarity=0.618 Sum_probs=186.2
Q ss_pred CCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHH
Q 025135 9 YPNPQALQTSEIPEVIDQYR-QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIV 87 (257)
Q Consensus 9 ~~~p~~lt~~eI~~ii~~f~-~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~ 87 (257)
+..|+.||.+||++.|.+|. .||+.+.+|||||||||++|||||+||+||.+|+|||+||||+|||+||++||+++||+
T Consensus 157 ~~~p~~l~~e~Ik~~V~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~ 236 (400)
T KOG0134|consen 157 FGKPKPLSKEQIKTEVVDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRK 236 (400)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHH
Confidence 45699999999996666555 55555559999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCC---CchhHHHH
Q 025135 88 AIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPG---TEDEEAQL 164 (257)
Q Consensus 88 ~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~---~~~~~~~~ 164 (257)
++|...+++|+++..+|++.+ .+.++...+|..++..| +|++.++.+.+.........+.+ ......++
T Consensus 237 ~Ip~s~~~l~~~~~~~fq~~~--~t~d~~~~~~~~y~~~g------~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f 308 (400)
T KOG0134|consen 237 EIPASRVFLRGSPTNEFQDIG--ITIDDAIKMCGLYEDGG------LDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEF 308 (400)
T ss_pred hhccccceEEecCchhhhhcc--ccccchHHHHHHHHhcc------cchhhccCchhhhhhhhccccccccccccchhhh
Confidence 999988999998755565543 34666778899888888 56544432222111100000110 12344566
Q ss_pred HHHHHHHhCCcEEEeC-CC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCCCCCccccccccCCCCCCccccc
Q 025135 165 LRTWRRSYQGTFICSG-GF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAPLNKYVRKTFYTHDPIVGYTDYP 242 (257)
Q Consensus 165 ~~~ir~~~~~pvi~~G-~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~ 242 (257)
...+++.++.|||..| +. |++.+.++++.|..|+|++||.+++|||||.|++.|.++|.+++.++|...+++||++||
T Consensus 309 ~e~~r~~~kgt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~~~~n~~d~~t~~~~~~~~g~~~~~ 388 (400)
T KOG0134|consen 309 AETIRPVFKGTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNGLPLNKYDRSTFYTDMAVKGYADYP 388 (400)
T ss_pred hhHHHHHhcCcEEEecCCccCHHHHHHHHhcCCceeEEecchhccCCchhHHHHhCCCcccccccccccccchhccccCh
Confidence 7789999999977665 34 999999999999999999999999999999999999999999999999888899999999
Q ss_pred CCccc
Q 025135 243 FLSKA 247 (257)
Q Consensus 243 ~~~~~ 247 (257)
....+
T Consensus 389 ~~~~~ 393 (400)
T KOG0134|consen 389 QMEQM 393 (400)
T ss_pred hHHHH
Confidence 88754
No 18
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.97 E-value=6.7e-31 Score=227.28 Aligned_cols=163 Identities=18% Similarity=0.166 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
.++|+++|++++++|||+||||+|| |.+|.|+|+|||+++||.+++.|++++||++++ .+|.+|++..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~---------p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~-- 133 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGC---------PSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLG-- 133 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC---------CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeec--
Confidence 6899999999999999999999999 999999999999999999999999999999998 4788888742
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF- 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i- 182 (257)
+. ..+++.++++.|++.| +++|+++........ ..+..+..++.+++.+++||+++|++
T Consensus 134 ~~------~~~~~~~~~~~l~~~G------vd~i~v~~~~~~~~~--------~~~~~~~~~~~i~~~~~ipvi~~Ggi~ 193 (231)
T cd02801 134 WD------DEEETLELAKALEDAG------ASALTVHGRTREQRY--------SGPADWDYIAEIKEAVSIPVIANGDIF 193 (231)
T ss_pred cC------CchHHHHHHHHHHHhC------CCEEEECCCCHHHcC--------CCCCCHHHHHHHHhCCCCeEEEeCCCC
Confidence 11 1146788999999999 999999875432211 11223466788999999999999999
Q ss_pred CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcC
Q 025135 183 TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g 218 (257)
++++++++++.+++|+|++||++++||+|++|+++.
T Consensus 194 ~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~~ 229 (231)
T cd02801 194 SLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKEL 229 (231)
T ss_pred CHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhhc
Confidence 899999999998899999999999999999999865
No 19
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.96 E-value=2.2e-28 Score=220.86 Aligned_cols=169 Identities=18% Similarity=0.154 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEcc
Q 025135 22 EVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSP 100 (257)
Q Consensus 22 ~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~ 100 (257)
.-.++|++||++++++|||+||||+|| |........+|..+++|.+++.+|+++||++++.+ ||+||++.
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GC---------P~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~ 142 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGC---------PSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL 142 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC---------CchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC
Confidence 346789999999999999999999999 54222122233369999999999999999999865 89999996
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeC
Q 025135 101 AIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG 180 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G 180 (257)
. ++ +.+++.++++.|+++| +++|++|.+...+ ++.+.+..++.++++|+.+++|||+||
T Consensus 143 g--~~------~~~~~~~~a~~l~~~G------vd~i~Vh~Rt~~~-------~y~g~~~~~~~i~~ik~~~~iPVi~nG 201 (312)
T PRK10550 143 G--WD------SGERKFEIADAVQQAG------ATELVVHGRTKED-------GYRAEHINWQAIGEIRQRLTIPVIANG 201 (312)
T ss_pred C--CC------CchHHHHHHHHHHhcC------CCEEEECCCCCcc-------CCCCCcccHHHHHHHHhhcCCcEEEeC
Confidence 2 22 2244689999999999 9999998754322 122233235778899999999999999
Q ss_pred CC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCC
Q 025135 181 GF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP 220 (257)
Q Consensus 181 ~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~ 220 (257)
+| |+++++++|+.++||+||+||++++||||+++++.|.+
T Consensus 202 dI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~ 242 (312)
T PRK10550 202 EIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEP 242 (312)
T ss_pred CcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCC
Confidence 99 99999999999999999999999999999999998763
No 20
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.96 E-value=4.5e-28 Score=219.90 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCc-hhhHhhHHHHHHHHHHHHhCCCeEEEEEccCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGS-IENRCRFLMQLVREVIVAIGADRVGVRMSPAI 102 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs-~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~ 102 (257)
.++|++||++++++|||+||||+|| | .|+|+|+|||| +.+|.+++.||+++||++++ .||.+|++..
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gc---------P-~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~g- 141 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGC---------P-VPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRIG- 141 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCC---------C-HHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEcc-
Confidence 4799999999999999999999999 8 79999999998 68999999999999999986 4899999852
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
+++ ...+..++++.|++.| +++|+++.+.... .+. .+..++.++.+++.+++|||++|++
T Consensus 142 -~~~-----~~~~~~~~a~~l~~~G------~d~i~vh~r~~~~-------~~~-~~~~~~~i~~i~~~~~ipvi~nGgI 201 (319)
T TIGR00737 142 -WDD-----AHINAVEAARIAEDAG------AQAVTLHGRTRAQ-------GYS-GEANWDIIARVKQAVRIPVIGNGDI 201 (319)
T ss_pred -cCC-----CcchHHHHHHHHHHhC------CCEEEEEcccccc-------cCC-CchhHHHHHHHHHcCCCcEEEeCCC
Confidence 221 1224568999999999 8999998542211 111 1234577888999999999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
|+++++++++.++||+|++||++++||+|++++++
T Consensus 202 ~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~ 237 (319)
T TIGR00737 202 FSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQ 237 (319)
T ss_pred CCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHH
Confidence 99999999988889999999999999999999874
No 21
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.96 E-value=6.4e-28 Score=219.92 Aligned_cols=171 Identities=17% Similarity=0.156 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
.+.|++||++++++|||+||||+|| |..|.|+|+||+++++|.+++.||++++|++++. +|.+|++..
T Consensus 76 p~~~~~aA~~~~~~g~d~IdlN~gC---------P~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~-pVsvKiR~g-- 143 (333)
T PRK11815 76 PADLAEAAKLAEDWGYDEINLNVGC---------PSDRVQNGRFGACLMAEPELVADCVKAMKDAVSI-PVTVKHRIG-- 143 (333)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCC---------CHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCC-ceEEEEEee--
Confidence 4789999999999999999999999 9999999999999999999999999999999853 888887642
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGF 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~i 182 (257)
+++ ..+.++..++++.|+++| ++++++|.+.....+.........++..+..+..+++.+ ++|||++|++
T Consensus 144 ~~~---~~t~~~~~~~~~~l~~aG------~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI 214 (333)
T PRK11815 144 IDD---QDSYEFLCDFVDTVAEAG------CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGI 214 (333)
T ss_pred eCC---CcCHHHHHHHHHHHHHhC------CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCc
Confidence 221 134567789999999999 899999854321111110000011223356677888886 8999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
|+++++++++ + ||+||+||+++.||+|++++++
T Consensus 215 ~s~eda~~~l~-~-aDgVmIGRa~l~nP~~~~~~~~ 248 (333)
T PRK11815 215 KTLEEAKEHLQ-H-VDGVMIGRAAYHNPYLLAEVDR 248 (333)
T ss_pred CCHHHHHHHHh-c-CCEEEEcHHHHhCCHHHHHHHH
Confidence 9999999997 4 9999999999999999999875
No 22
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.94 E-value=1.8e-25 Score=202.41 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
.+.|++||+++.++|||+||||+|| |..|.+++.||+++.++.+++.+||+++|++++. ||+||++..
T Consensus 66 p~~~~~aA~~~~~~g~d~IDlN~GC---------P~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~-PVsvKiR~g-- 133 (318)
T TIGR00742 66 PNDLAKCAKIAEKRGYDEINLNVGC---------PSDRVQNGNFGACLMGNADLVADCVKAMQEAVNI-PVTVKHRIG-- 133 (318)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCC---------CHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCC-CeEEEEecC--
Confidence 4789999999999999999999999 9999999999999999999999999999999854 899999863
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGF 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~i 182 (257)
+++ .++.+...++++.|+++| ++.|++|.++....+..........+..+..+.++++.+ ++|||+||++
T Consensus 134 ~~~---~~~~~~~~~~~~~l~~~G------~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI 204 (318)
T TIGR00742 134 IDP---LDSYEFLCDFVEIVSGKG------CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGI 204 (318)
T ss_pred CCC---cchHHHHHHHHHHHHHcC------CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCc
Confidence 221 123467789999999999 899999876531111111000011223456677888888 7999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
|++++.+++. | ||.||+||+++.|||++.++.+
T Consensus 205 ~s~~da~~~l~-g-~dgVMigRgal~nP~if~~~~~ 238 (318)
T TIGR00742 205 KNSEQIKQHLS-H-VDGVMVGREAYENPYLLANVDR 238 (318)
T ss_pred CCHHHHHHHHh-C-CCEEEECHHHHhCCHHHHHHHH
Confidence 9999999995 4 9999999999999999998865
No 23
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.92 E-value=1.3e-23 Score=188.69 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
+++|+++|++++++|||+||||.+| |.+|+|.+.||++ .+++.||+++||++++ .||++|+++.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~c---------P~~~~~g~~~~~~----~~~~~eiv~~vr~~~~-~Pv~vKl~~~-- 164 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISC---------PNVKGGGMAFGTD----PEAVAEIVKAVKKATD-VPVIVKLTPN-- 164 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCC---------CCCCCCcccccCC----HHHHHHHHHHHHhccC-CCEEEEeCCC--
Confidence 6899999999999999999999887 9999887777755 5899999999999983 3899999863
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc----c--CCC---cCCCCCCC---chhHHHHHHHHHHH
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT----A--YGQ---TESGRPGT---EDEEAQLLRTWRRS 171 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~----~--~~~---~~~~~~~~---~~~~~~~~~~ir~~ 171 (257)
.++..++++.++++| +|.|++++.... . ... ...+..++ .+.....++.+++.
T Consensus 165 ---------~~~~~~~a~~~~~~G------~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~ 229 (296)
T cd04740 165 ---------VTDIVEIARAAEEAG------ADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA 229 (296)
T ss_pred ---------chhHHHHHHHHHHcC------CCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh
Confidence 235678999999999 888877532110 0 000 00011111 22345677888998
Q ss_pred hCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 172 YQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 172 ~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
+++|||++|++ +++++.++|+.| ||+|++||+++.||+++++++++.
T Consensus 230 ~~ipii~~GGI~~~~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l 277 (296)
T cd04740 230 VEIPIIGVGGIASGEDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGL 277 (296)
T ss_pred cCCCEEEECCCCCHHHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHH
Confidence 99999999999 899999999988 999999999999999999999776
No 24
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.91 E-value=8.7e-24 Score=191.90 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCC-chhhHhhHHHHHHHHHHHHhCCCeEEEEEccCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG-SIENRCRFLMQLVREVIVAIGADRVGVRMSPAI 102 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGG-s~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~ 102 (257)
.++|+++|+++++.|||+||||+|| |.. +.+..++| .+.++.+++.||+++||++++ .+|++|++.
T Consensus 76 ~~~~~~aa~~~~~~g~d~IdlN~gC---------P~~-~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d-~pv~vKiR~-- 142 (321)
T PRK10415 76 PKEMADAARINVESGAQIIDINMGC---------PAK-KVNRKLAGSALLQYPDLVKSILTEVVNAVD-VPVTLKIRT-- 142 (321)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCC---------CHH-HHcCCCcccHHhcCHHHHHHHHHHHHHhcC-CceEEEEEc--
Confidence 4788999999999999999999999 874 33444445 599999999999999999984 389999984
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
++.+ ...++.++++.+++.| +++|++|.+...+. +.+.. .+..++++++.+++|||++|++
T Consensus 143 G~~~-----~~~~~~~~a~~le~~G------~d~i~vh~rt~~~~-------~~G~a-~~~~i~~ik~~~~iPVI~nGgI 203 (321)
T PRK10415 143 GWAP-----EHRNCVEIAQLAEDCG------IQALTIHGRTRACL-------FNGEA-EYDSIRAVKQKVSIPVIANGDI 203 (321)
T ss_pred cccC-----CcchHHHHHHHHHHhC------CCEEEEecCccccc-------cCCCc-ChHHHHHHHHhcCCcEEEeCCC
Confidence 2321 2345788999999999 89999986542221 11222 3467888999999999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
|+++++++++.++||+||+||+++.||++++++++
T Consensus 204 ~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~ 239 (321)
T PRK10415 204 TDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred CCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHH
Confidence 99999999998889999999999999999999875
No 25
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=8.6e-23 Score=185.23 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
.+.+++||+.+.+.|+|+|+||+|| |........+|..|.+...++.+||+++++++++-||.||++. +
T Consensus 78 p~~l~eaA~~~~~~g~~~IdlN~GC---------P~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl--G 146 (323)
T COG0042 78 PELLAEAAKIAEELGADIIDLNCGC---------PSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL--G 146 (323)
T ss_pred HHHHHHHHHHHHhcCCCEEeeeCCC---------ChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec--c
Confidence 4788999999999999999999999 9887777788888999999999999999999983389999985 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i 182 (257)
+++ ......++++.+++.| ++.++||.++..+.+ ..+..++.++.+|+.++ +|||+||+|
T Consensus 147 ~d~-----~~~~~~~ia~~~~~~g------~~~ltVHgRtr~~~y--------~~~ad~~~I~~vk~~~~~ipvi~NGdI 207 (323)
T COG0042 147 WDD-----DDILALEIARILEDAG------ADALTVHGRTRAQGY--------LGPADWDYIKELKEAVPSIPVIANGDI 207 (323)
T ss_pred cCc-----ccccHHHHHHHHHhcC------CCEEEEecccHHhcC--------CCccCHHHHHHHHHhCCCCeEEeCCCc
Confidence 322 1124677999999999 899999986554432 12244678899999999 999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
++++|.+.|+.++||.||+||+.+.||++++++
T Consensus 208 ~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 208 KSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred CCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH
Confidence 999999999999999999999999999999984
No 26
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.89 E-value=2.4e-22 Score=180.93 Aligned_cols=163 Identities=14% Similarity=0.136 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHcC-CCEEEecccccchhhhcCCCCcCCcCCCC-CCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccC
Q 025135 24 IDQYRQAALNAIQAG-FDGIEIHGAHGYLIDQFLKDGINDRTDEY-GGSIENRCRFLMQLVREVIVAIGADRVGVRMSPA 101 (257)
Q Consensus 24 i~~f~~AA~~a~~aG-fDgVEIh~a~GyLl~qFlSp~~N~R~D~y-GGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~ 101 (257)
.++|+++|++++++| ||+||||++| |+. .. |..+.++.+++.||+++||+++ +.||++|+++.
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~c---------P~~-----~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~ 167 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISC---------PNV-----KHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPN 167 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCC---------CCC-----CCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCC
Confidence 689999999999999 9999999999 764 23 3356788999999999999998 34899999963
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc----cCC-----CcCCCCCCC---chhHHHHHHHHH
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT----AYG-----QTESGRPGT---EDEEAQLLRTWR 169 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~----~~~-----~~~~~~~~~---~~~~~~~~~~ir 169 (257)
.++..++++.|+++| +|.|++++.... ... ....++.++ .+.....++.++
T Consensus 168 -----------~~~~~~~a~~l~~~G------~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~ 230 (301)
T PRK07259 168 -----------VTDIVEIAKAAEEAG------ADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVY 230 (301)
T ss_pred -----------chhHHHHHHHHHHcC------CCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHH
Confidence 345678999999999 888877542110 000 000011111 223456778899
Q ss_pred HHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 170 RSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 170 ~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
+.+++|||++|++ |+++++++|+.| +|+|++||+++.||+|++|++++.
T Consensus 231 ~~~~ipvi~~GGI~~~~da~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 231 QAVDIPIIGMGGISSAEDAIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred HhCCCCEEEECCCCCHHHHHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHH
Confidence 9999999999999 999999999988 999999999999999999999876
No 27
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.89 E-value=6.6e-22 Score=177.97 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHcC--CCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccC
Q 025135 24 IDQYRQAALNAIQAG--FDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPA 101 (257)
Q Consensus 24 i~~f~~AA~~a~~aG--fDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~ 101 (257)
.++|+++|+.+.+++ +|+||||++| |.+|.|.+.||+ +.+++.||+++||++++ .||++|+++.
T Consensus 102 ~~~~~~~a~~~~~~~~~~d~ielN~~c---------P~~~~~g~~l~~----~~~~~~eiv~~vr~~~~-~pv~vKi~~~ 167 (300)
T TIGR01037 102 VEEFAEVAEKLEKAPPYVDAYELNLSC---------PHVKGGGIAIGQ----DPELSADVVKAVKDKTD-VPVFAKLSPN 167 (300)
T ss_pred HHHHHHHHHHHHhccCccCEEEEECCC---------CCCCCCcccccc----CHHHHHHHHHHHHHhcC-CCEEEECCCC
Confidence 577889999998874 9999999999 998876666665 45689999999999984 3899999852
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCccc----CC-----CcCCCCCCCch---hHHHHHHHHH
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTA----YG-----QTESGRPGTED---EEAQLLRTWR 169 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~----~~-----~~~~~~~~~~~---~~~~~~~~ir 169 (257)
.++..++++.|+++| +|+|+++...... .. ....+++.+.+ .....+..++
T Consensus 168 -----------~~~~~~~a~~l~~~G------~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~ 230 (300)
T TIGR01037 168 -----------VTDITEIAKAAEEAG------ADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVY 230 (300)
T ss_pred -----------hhhHHHHHHHHHHcC------CCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHH
Confidence 345688999999999 9999987432110 00 00111222222 1235667888
Q ss_pred HHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 170 RSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 170 ~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
+.+++|||++|++ ++++|.++|+.| ||+|++||+++.||+|+++++++.
T Consensus 231 ~~~~ipvi~~GGI~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l 280 (300)
T TIGR01037 231 KMVDIPIIGVGGITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGL 280 (300)
T ss_pred hcCCCCEEEECCCCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHH
Confidence 9899999999999 999999999987 999999999999999999999775
No 28
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.89 E-value=3.7e-23 Score=186.91 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCC
Q 025135 23 VIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAI 102 (257)
Q Consensus 23 ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~ 102 (257)
-.+.+++||+.+.+.|+|+|+||+|| |........+|..+.+....+.+||+++|++++ .||.+|++..
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GC---------P~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~pvsvKiR~g- 132 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGC---------PAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IPVSVKIRLG- 132 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE------------SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SEEEEEEESE-
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCC---------CHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cceEEecccc-
Confidence 35789999999999999999999999 887777778999999999999999999999987 4899998853
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
++ ++.++..++++.|+++| +++|+||.++..+.. .. +..++.++.+++.+++|||+||++
T Consensus 133 -~~-----~~~~~~~~~~~~l~~~G------~~~i~vH~Rt~~q~~-------~~-~a~w~~i~~i~~~~~ipvi~NGdI 192 (309)
T PF01207_consen 133 -WD-----DSPEETIEFARILEDAG------VSAITVHGRTRKQRY-------KG-PADWEAIAEIKEALPIPVIANGDI 192 (309)
T ss_dssp -CT-------CHHHHHHHHHHHHTT--------EEEEECS-TTCCC-------TS----HHHHHHCHHC-TSEEEEESS-
T ss_pred -cc-----cchhHHHHHHHHhhhcc------cceEEEecCchhhcC-------Cc-ccchHHHHHHhhcccceeEEcCcc
Confidence 22 23567889999999999 999999976443322 22 445678889999999999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCchHHH---HHHcCC
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNPDLVL---RFKLNA 219 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP~l~~---k~~~g~ 219 (257)
|++++.++++..+||.||+||+++.||++++ .+..|.
T Consensus 193 ~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~ 233 (309)
T PF01207_consen 193 FSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGE 233 (309)
T ss_dssp -SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHT
T ss_pred CCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCC
Confidence 9999999999978999999999999999998 455444
No 29
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.86 E-value=1.1e-20 Score=168.90 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
.++|+++|+++.++|+|+||||++| |..+.. ..+.++.+++.|++++||++++ .||++|+++.
T Consensus 110 ~~~~~~~a~~~~~~G~d~ielN~~c---------P~~~~~-----~~~~~~~~~~~eiv~~vr~~~~-~pv~vKl~~~-- 172 (289)
T cd02810 110 KEDYVELARKIERAGAKALELNLSC---------PNVGGG-----RQLGQDPEAVANLLKAVKAAVD-IPLLVKLSPY-- 172 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCC---------CCCCCC-----cccccCHHHHHHHHHHHHHccC-CCEEEEeCCC--
Confidence 4789999999999999999999999 876542 2367889999999999999983 4899999964
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCC---------CcCCCCCCC---chhHHHHHHHHHHH
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYG---------QTESGRPGT---EDEEAQLLRTWRRS 171 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~---------~~~~~~~~~---~~~~~~~~~~ir~~ 171 (257)
.+.++..++++.|+++| +|+|+++........ ....+...+ .+.....++.+++.
T Consensus 173 -------~~~~~~~~~a~~l~~~G------ad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~ 239 (289)
T cd02810 173 -------FDLEDIVELAKAAERAG------ADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAAR 239 (289)
T ss_pred -------CCHHHHHHHHHHHHHcC------CCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHh
Confidence 24567889999999999 999998754221100 000011111 12234567889998
Q ss_pred h--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-chHHHHHHcC
Q 025135 172 Y--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN-PDLVLRFKLN 218 (257)
Q Consensus 172 ~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad-P~l~~k~~~g 218 (257)
+ ++|||++||+ +++++.++|..| ||+|++||+++.| |+++++++++
T Consensus 240 ~~~~ipiia~GGI~~~~da~~~l~~G-Ad~V~vg~a~~~~GP~~~~~i~~~ 289 (289)
T cd02810 240 LQLDIPIIGVGGIDSGEDVLEMLMAG-ASAVQVATALMWDGPDVIRKIKKE 289 (289)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHcC-ccHheEcHHHHhcCccHHHHHhcC
Confidence 8 8999999999 899999999988 9999999999999 9999999753
No 30
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5.2e-21 Score=171.58 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
.+.+.+||+++..-+ |||+||+|| |..-.+...||..|.....|+.|+|.+|++.++. +|.+||+.+
T Consensus 85 p~~ll~Aa~lv~~y~-D~idlNcGC---------Pq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~-pVs~KIRI~-- 151 (358)
T KOG2335|consen 85 PENLLKAARLVQPYC-DGIDLNCGC---------PQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNV-PVSVKIRIF-- 151 (358)
T ss_pred HHHHHHHHHHhhhhc-CcccccCCC---------CHHHHhcCCccceeccCHHHHHHHHHHHHhhcCC-CeEEEEEec--
Confidence 467889999998877 999999999 9888899999999999999999999999999986 788888865
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i 182 (257)
.+.+.+.++|++++++| +++++||+++..+.+. ...+..++.++.||+.++ +||++||+|
T Consensus 152 -------~d~~kTvd~ak~~e~aG------~~~ltVHGRtr~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI 212 (358)
T KOG2335|consen 152 -------VDLEKTVDYAKMLEDAG------VSLLTVHGRTREQKGL------KTGPADWEAIKAVRENVPDIPVIANGNI 212 (358)
T ss_pred -------CcHHHHHHHHHHHHhCC------CcEEEEecccHHhcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCc
Confidence 34778899999999999 8999999876654431 123445678899999998 999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCchHHHH
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNPDLVLR 214 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k 214 (257)
++++++.+++..++|.||.|||++.||.++.-
T Consensus 213 ~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~ 245 (358)
T KOG2335|consen 213 LSLEDVERCLKYTGADGVMSARGLLYNPALFLT 245 (358)
T ss_pred CcHHHHHHHHHHhCCceEEecchhhcCchhhcc
Confidence 89999999997789999999999999999944
No 31
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.81 E-value=3.9e-19 Score=154.60 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
.+.++++|+.+.+ ++|+||||++| |........+|..+......+.+|+++||+ + +.||++|++..
T Consensus 84 ~~~~~~aa~~~~~-~~~~ielN~gC---------P~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~-~~pVsvKir~g-- 149 (233)
T cd02911 84 LEPLLNAAALVAK-NAAILEINAHC---------RQPEMVEAGAGEALLKDPERLSEFIKALKE-T-GVPVSVKIRAG-- 149 (233)
T ss_pred HHHHHHHHHHHhh-cCCEEEEECCC---------CcHHHhcCCcchHHcCCHHHHHHHHHHHHh-c-CCCEEEEEcCC--
Confidence 5678899998877 46999999999 776555556677788889999999999998 4 34899999973
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF- 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i- 182 (257)
+ + ++..++++.|+++| +|+||++.. +.. ....+..+++++ .++|||+||++
T Consensus 150 ~-------~-~~~~~la~~l~~aG------~d~ihv~~~-~~g-----------~~ad~~~I~~i~--~~ipVIgnGgI~ 201 (233)
T cd02911 150 V-------D-VDDEELARLIEKAG------ADIIHVDAM-DPG-----------NHADLKKIRDIS--TELFIIGNNSVT 201 (233)
T ss_pred c-------C-cCHHHHHHHHHHhC------CCEEEECcC-CCC-----------CCCcHHHHHHhc--CCCEEEEECCcC
Confidence 1 1 34678999999999 899998642 111 111234445454 68999999999
Q ss_pred CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 183 TRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
|++++.++++.| ||+||+||+ .|||+++.+.
T Consensus 202 s~eda~~~l~~G-aD~VmiGR~--~~p~~~~~~~ 232 (233)
T cd02911 202 TIESAKEMFSYG-ADMVSVARA--SLPENIEWLV 232 (233)
T ss_pred CHHHHHHHHHcC-CCEEEEcCC--CCchHHHHhh
Confidence 999999999987 999999999 9999998875
No 32
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.80 E-value=1.7e-18 Score=149.81 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
+++|.++|+.+.+ ++|+||||++| |......-.+|..+......+.++++++|+. + .||++||++.
T Consensus 79 ~ee~~~~a~~v~~-~~d~IdiN~gC---------P~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~-~-~PVsvKiR~~-- 144 (231)
T TIGR00736 79 LEEAYDVLLTIAE-HADIIEINAHC---------RQPEITEIGIGQELLKNKELLKEFLTKMKEL-N-KPIFVKIRGN-- 144 (231)
T ss_pred HHHHHHHHHHHhc-CCCEEEEECCC---------CcHHHcCCCCchhhcCCHHHHHHHHHHHHcC-C-CcEEEEeCCC--
Confidence 4678888888755 89999999999 8877777788888999999999999999943 3 3899999973
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i 182 (257)
+ +..+..++++.++++| +++|+++. .+.. .....+..++.+++.++ +|||+||++
T Consensus 145 ~-------~~~~~~~~a~~l~~aG------ad~i~Vd~-~~~g----------~~~a~~~~I~~i~~~~~~ipIIgNGgI 200 (231)
T TIGR00736 145 C-------IPLDELIDALNLVDDG------FDGIHVDA-MYPG----------KPYADMDLLKILSEEFNDKIIIGNNSI 200 (231)
T ss_pred C-------CcchHHHHHHHHHHcC------CCEEEEee-CCCC----------CchhhHHHHHHHHHhcCCCcEEEECCc
Confidence 1 1234678999999999 99999964 2210 12234678899999985 999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
|.+++.++++.| ||+||+||+++.+
T Consensus 201 ~s~eda~e~l~~G-Ad~VmvgR~~l~~ 226 (231)
T TIGR00736 201 DDIESAKEMLKAG-ADFVSVARAILKG 226 (231)
T ss_pred CCHHHHHHHHHhC-CCeEEEcHhhccC
Confidence 999999999965 9999999999865
No 33
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.79 E-value=4.3e-18 Score=153.31 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
.++|+++|+++.++|+|+||||.+| |++ .....+|..+......+.+|+++||+.+.. ||+|||+++
T Consensus 112 ~~~~~~~a~~~~~~gad~ielN~sC---------P~~-~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~-Pv~vKl~~~-- 178 (299)
T cd02940 112 KEDWTELAKLVEEAGADALELNFSC---------PHG-MPERGMGAAVGQDPELVEEICRWVREAVKI-PVIAKLTPN-- 178 (299)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCC---------CCC-CCCCCCchhhccCHHHHHHHHHHHHHhcCC-CeEEECCCC--
Confidence 4789999999999999999999999 876 222346767778888999999999998853 899999963
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC--------------CCcCCCCCCCc---hhHHHHHH
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY--------------GQTESGRPGTE---DEEAQLLR 166 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~--------------~~~~~~~~~~~---~~~~~~~~ 166 (257)
.....++++.++++| ++.|.+++...... ..+..++++++ +..+..+.
T Consensus 179 ---------~~~~~~~a~~~~~~G------adgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~ 243 (299)
T cd02940 179 ---------ITDIREIARAAKEGG------ADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVS 243 (299)
T ss_pred ---------chhHHHHHHHHHHcC------CCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHH
Confidence 234578899999999 78887654221100 00111223222 23357788
Q ss_pred HHHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh-CchHHHHHHcC
Q 025135 167 TWRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS-NPDLVLRFKLN 218 (257)
Q Consensus 167 ~ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia-dP~l~~k~~~g 218 (257)
.+++.+ ++|||++||+ +.+++.++|..| ||+|++||+++. .|+++.++.++
T Consensus 244 ~~~~~~~~~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 244 QIARAPEPGLPISGIGGIESWEDAAEFLLLG-ASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred HHHHhcCCCCcEEEECCCCCHHHHHHHHHcC-CChheEceeecccCCcHHHHHhhh
Confidence 899999 8999999999 899999999976 999999999998 99999999865
No 34
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.79 E-value=1.7e-18 Score=158.74 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCc-CCcCCCCCCchhhHhhHHHHHHHHHHHHhCC----CeEEE
Q 025135 22 EVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI-NDRTDEYGGSIENRCRFLMQLVREVIVAIGA----DRVGV 96 (257)
Q Consensus 22 ~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~-N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~----~~v~v 96 (257)
..+++|++.++.+.+ ++|++|||.+| |++ |.|.++++ ..+.||+++||++++. .||.+
T Consensus 154 ~~~~d~~~~~~~~~~-~ad~lelN~sc---------P~~~g~~~~~~~-------~~~~eiv~aVr~~~~~~~~~~PV~v 216 (344)
T PRK05286 154 DAVDDYLICLEKLYP-YADYFTVNISS---------PNTPGLRDLQYG-------EALDELLAALKEAQAELHGYVPLLV 216 (344)
T ss_pred cCHHHHHHHHHHHHh-hCCEEEEEccC---------CCCCCcccccCH-------HHHHHHHHHHHHHHhccccCCceEE
Confidence 346778888887754 79999999999 876 66766665 3466999999999984 58999
Q ss_pred EEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCC---C---cCCCCCCCch---hHHHHHHH
Q 025135 97 RMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYG---Q---TESGRPGTED---EEAQLLRT 167 (257)
Q Consensus 97 rls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~---~---~~~~~~~~~~---~~~~~~~~ 167 (257)
||++. .+.++..++++.++++| +|.|+++.+...... . ...+++++.+ ..+..++.
T Consensus 217 Klsp~---------~~~~~~~~ia~~l~~~G------adgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~ 281 (344)
T PRK05286 217 KIAPD---------LSDEELDDIADLALEHG------IDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRR 281 (344)
T ss_pred EeCCC---------CCHHHHHHHHHHHHHhC------CcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHH
Confidence 99974 23456788999999999 999999875432110 0 0112222222 23456778
Q ss_pred HHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-chHHHHHHcCC
Q 025135 168 WRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN-PDLVLRFKLNA 219 (257)
Q Consensus 168 ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad-P~l~~k~~~g~ 219 (257)
+++.+ ++|||++||+ |++++.++|..| ||+|++||+++.+ |+++++++++.
T Consensus 282 l~~~~~~~ipIig~GGI~s~eda~e~l~aG-Ad~V~v~~~~~~~gP~~~~~i~~~L 336 (344)
T PRK05286 282 LYKELGGRLPIIGVGGIDSAEDAYEKIRAG-ASLVQIYSGLIYEGPGLVKEIVRGL 336 (344)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CCHHHHHHHHHHhCchHHHHHHHHH
Confidence 88888 7899999999 999999999976 9999999999985 99999998753
No 35
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.77 E-value=1.5e-17 Score=151.38 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
.++|+++|+.+.++|+|+||||.+| | |.+.+.+|+++++ .+.+++++||+++. .||.+|+++.
T Consensus 111 ~~~~~~~a~~~~~~gad~iElN~s~---------~--~~~~~~~g~~~~~---~~~eiv~~v~~~~~-iPv~vKl~p~-- 173 (325)
T cd04739 111 AGGWVDYARQIEEAGADALELNIYA---------L--PTDPDISGAEVEQ---RYLDILRAVKSAVT-IPVAVKLSPF-- 173 (325)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC---------C--CCCCCcccchHHH---HHHHHHHHHHhccC-CCEEEEcCCC--
Confidence 4778999999999999999999998 3 4556788888764 48899999999985 3999999973
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCc------CCCCCCC---chhHHHHHHHHHHHhCC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQT------ESGRPGT---EDEEAQLLRTWRRSYQG 174 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~ir~~~~~ 174 (257)
..+..++++.++++| ++.|.++.......... ..+..++ .+.....++.+++.+++
T Consensus 174 ---------~~~~~~~a~~l~~~G------adgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~i 238 (325)
T cd04739 174 ---------FSALAHMAKQLDAAG------ADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKA 238 (325)
T ss_pred ---------ccCHHHHHHHHHHcC------CCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCC
Confidence 123567899999999 88888876432111000 0111111 22334556778888899
Q ss_pred cEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-chHHHHHHcCC
Q 025135 175 TFICSGGF-TRELGIQALAEDGADLVAYGRLFISN-PDLVLRFKLNA 219 (257)
Q Consensus 175 pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad-P~l~~k~~~g~ 219 (257)
|||++||+ |.++|.+.|..| ||+|++||+++.+ |+++.++.++.
T Consensus 239 pIig~GGI~s~~Da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 239 SLAASGGVHDAEDVVKYLLAG-ADVVMTTSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred CEEEECCCCCHHHHHHHHHcC-CCeeEEehhhhhcCchHHHHHHHHH
Confidence 99999999 999999999876 9999999999995 99999998764
No 36
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.77 E-value=1.6e-17 Score=151.28 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCc-CCcCCCCCCchhhHhhHHHHHHHHHHHHhC---C-Ce
Q 025135 19 EIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI-NDRTDEYGGSIENRCRFLMQLVREVIVAIG---A-DR 93 (257)
Q Consensus 19 eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~-N~R~D~yGGs~enR~r~~~eiv~aiR~~vg---~-~~ 93 (257)
++++.+++|++.++.+.. ++|+||||.+| |++ +.|.+ .....+.+|+++||+++. . .|
T Consensus 142 ~~~~~~~d~~~~~~~~~~-~ad~ielN~sc---------P~~~g~~~~-------~~~~~~~~iv~av~~~~~~~~~~~P 204 (327)
T cd04738 142 PLEDAVEDYVIGVRKLGP-YADYLVVNVSS---------PNTPGLRDL-------QGKEALRELLTAVKEERNKLGKKVP 204 (327)
T ss_pred cccccHHHHHHHHHHHHh-hCCEEEEECCC---------CCCCccccc-------cCHHHHHHHHHHHHHHHhhcccCCC
Confidence 345667889888888765 59999999999 765 33333 234567899999999986 2 38
Q ss_pred EEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCC------CcCCCCCCCch---hHHHH
Q 025135 94 VGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYG------QTESGRPGTED---EEAQL 164 (257)
Q Consensus 94 v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~------~~~~~~~~~~~---~~~~~ 164 (257)
|++||++. .+.++..++++.++++| +|+|+++.+...... ....+++++.+ ..+..
T Consensus 205 v~vKl~~~---------~~~~~~~~ia~~l~~aG------ad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~ 269 (327)
T cd04738 205 LLVKIAPD---------LSDEELEDIADVALEHG------VDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEV 269 (327)
T ss_pred eEEEeCCC---------CCHHHHHHHHHHHHHcC------CcEEEEECCcccccccccccccCCCCccCChhhhHHHHHH
Confidence 99999963 23456788999999999 999998864321110 00111222222 23567
Q ss_pred HHHHHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-chHHHHHHcC
Q 025135 165 LRTWRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN-PDLVLRFKLN 218 (257)
Q Consensus 165 ~~~ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad-P~l~~k~~~g 218 (257)
++.+++.+ ++||+++||+ |++++.++|..| ||+|++||+++.+ |+++.++.++
T Consensus 270 v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aG-Ad~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 270 LRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG-ASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred HHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcC-CCHHhccHHHHhhCcHHHHHHHhc
Confidence 78899988 7899999999 999999999977 9999999999986 9999999865
No 37
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.75 E-value=5.4e-17 Score=148.29 Aligned_cols=163 Identities=18% Similarity=0.135 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
.++|+++|+++.++|+|+||||.+| |. .+.+.+|++.++ .+.+++++||+++. -||.+|+++.
T Consensus 113 ~~e~~~~a~~~~~agad~ielN~sc---------pp--~~~~~~g~~~~~---~~~eil~~v~~~~~-iPV~vKl~p~-- 175 (334)
T PRK07565 113 AGGWVDYARQIEQAGADALELNIYY---------LP--TDPDISGAEVEQ---RYLDILRAVKSAVS-IPVAVKLSPY-- 175 (334)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCC---------CC--CCCCCccccHHH---HHHHHHHHHHhccC-CcEEEEeCCC--
Confidence 3678899999999999999999987 43 345667777654 36899999999875 3899999863
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCc------CCCCCCC---chhHHHHHHHHHHHhCC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQT------ESGRPGT---EDEEAQLLRTWRRSYQG 174 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~ir~~~~~ 174 (257)
..+..++++.|++.| +|.|.+++......... ...+.++ .+.....++.+++.+++
T Consensus 176 ---------~~~~~~~a~~l~~~G------~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~i 240 (334)
T PRK07565 176 ---------FSNLANMAKRLDAAG------ADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGA 240 (334)
T ss_pred ---------chhHHHHHHHHHHcC------CCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCC
Confidence 223567899999999 89998876532211000 0111112 22334556678888899
Q ss_pred cEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-chHHHHHHcCC
Q 025135 175 TFICSGGF-TRELGIQALAEDGADLVAYGRLFISN-PDLVLRFKLNA 219 (257)
Q Consensus 175 pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad-P~l~~k~~~g~ 219 (257)
|||++||| |.+++.++|..| ||+|++||+++.+ |+++.++.++.
T Consensus 241 pIig~GGI~s~~Da~e~l~aG-A~~V~v~t~~~~~g~~~~~~i~~~L 286 (334)
T PRK07565 241 DLAATTGVHDAEDVIKMLLAG-ADVVMIASALLRHGPDYIGTILRGL 286 (334)
T ss_pred CEEEECCCCCHHHHHHHHHcC-CCceeeehHHhhhCcHHHHHHHHHH
Confidence 99999999 999999999976 9999999999996 99999988764
No 38
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.71 E-value=1.7e-16 Score=149.24 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCC-cCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDG-INDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAI 102 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~-~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~ 102 (257)
.++|++.|+.+.++|+|+||||.+| |+ .+.| .+|..+......+.+|+++||+.+. -||+|||+++
T Consensus 112 ~~~~~~~a~~~~~~g~d~ielN~sc---------P~~~~~~--~~g~~~~~~~~~~~~i~~~v~~~~~-~Pv~vKl~p~- 178 (420)
T PRK08318 112 EEEWKEIAPLVEETGADGIELNFGC---------PHGMSER--GMGSAVGQVPELVEMYTRWVKRGSR-LPVIVKLTPN- 178 (420)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC---------CCCcccc--CCcccccCCHHHHHHHHHHHHhccC-CcEEEEcCCC-
Confidence 5778999999999999999999999 87 3332 4666777788999999999999875 3899999973
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC--------------CCcCCCCCCCch---hHHHHH
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY--------------GQTESGRPGTED---EEAQLL 165 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~--------------~~~~~~~~~~~~---~~~~~~ 165 (257)
..+..++++.++++| ++.|.+++...... .....+++++++ ..+..+
T Consensus 179 ----------~~~~~~~a~~~~~~G------adgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v 242 (420)
T PRK08318 179 ----------ITDIREPARAAKRGG------ADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMV 242 (420)
T ss_pred ----------cccHHHHHHHHHHCC------CCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHH
Confidence 122567899999999 77776543211100 011122333333 245677
Q ss_pred HHHHHHh---CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh-CchHHHHHHcCC
Q 025135 166 RTWRRSY---QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS-NPDLVLRFKLNA 219 (257)
Q Consensus 166 ~~ir~~~---~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia-dP~l~~k~~~g~ 219 (257)
+.+++.+ ++|||++||+ |.++|.+.|..| ||+|+++|+++. .|+++.++..+.
T Consensus 243 ~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L 300 (420)
T PRK08318 243 AEIARDPETRGLPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGL 300 (420)
T ss_pred HHHHhccccCCCCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHH
Confidence 7888887 7899999999 999999999977 999999999998 799999988774
No 39
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.70 E-value=9e-16 Score=137.92 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHc---CCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEcc
Q 025135 24 IDQYRQAALNAIQA---GFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSP 100 (257)
Q Consensus 24 i~~f~~AA~~a~~a---GfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~ 100 (257)
.++|+++|++..+. |+|+||||.+| |++... +++......+.+|+++||+++.. ||++||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~ad~ielN~sC---------Pn~~~~-----~~~~~~~~~~~~i~~~v~~~~~i-Pv~vKl~p 166 (294)
T cd04741 102 AEDIAAMYKKIAAHQKQFPLAMELNLSC---------PNVPGK-----PPPAYDFDATLEYLTAVKAAYSI-PVGVKTPP 166 (294)
T ss_pred HHHHHHHHHHHHhhccccccEEEEECCC---------CCCCCc-----ccccCCHHHHHHHHHHHHHhcCC-CEEEEeCC
Confidence 57888888888775 79999999999 875211 12333456899999999999853 89999998
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhc--CCccCCceeEEEeeCCCc-----c----cCC---CcCCCCCCCch---hHHH
Q 025135 101 AIDHLDATDSDPLGLGLAVIQGLNKL--QIDQGAKLTYLHVTQPRY-----T----AYG---QTESGRPGTED---EEAQ 163 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~L~~~--G~~~~~~vd~i~v~~~~~-----~----~~~---~~~~~~~~~~~---~~~~ 163 (257)
. .+.+...++++.+.+. | ++.|.+++... + .+. ....++.++++ ....
T Consensus 167 ~---------~~~~~~~~~a~~l~~~~~G------~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~ 231 (294)
T cd04741 167 Y---------TDPAQFDTLAEALNAFACP------ISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALG 231 (294)
T ss_pred C---------CCHHHHHHHHHHHhccccC------CcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHH
Confidence 4 1244567888988888 7 77777543221 1 000 00112222222 2234
Q ss_pred HHHHHHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh-CchHHHHHHcCC
Q 025135 164 LLRTWRRSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS-NPDLVLRFKLNA 219 (257)
Q Consensus 164 ~~~~ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia-dP~l~~k~~~g~ 219 (257)
.++.+++.++ +|||++||+ +.+++.++|..| ||+|+++++++. +|++++++.++.
T Consensus 232 ~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L 290 (294)
T cd04741 232 NVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAG-ASAVQVGTALGKEGPKVFARIEKEL 290 (294)
T ss_pred HHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcC-CCceeEchhhhhcCchHHHHHHHHH
Confidence 4567778884 899999999 999999999976 999999999995 999999998653
No 40
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.57 E-value=1.1e-13 Score=126.42 Aligned_cols=164 Identities=15% Similarity=0.067 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhC------CCeEEE
Q 025135 23 VIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIG------ADRVGV 96 (257)
Q Consensus 23 ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg------~~~v~v 96 (257)
..++|++.++++.+ ..|+||||.+| |++ .....+ .....+.+|+++||+++. ..||++
T Consensus 152 ~~~dy~~~~~~~~~-~ad~iElNlSc---------Pn~--~~~~~~----~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~v 215 (335)
T TIGR01036 152 AKEDYAACLRKLGP-LADYLVVNVSS---------PNT--PGLRDL----QYKAELRDLLTAVKQEQDGLRRVHRVPVLV 215 (335)
T ss_pred CHHHHHHHHHHHhh-hCCEEEEEccC---------CCC--CCcccc----cCHHHHHHHHHHHHHHHHhhhhccCCceEE
Confidence 46788888887765 59999999999 764 122222 224688999999999886 138999
Q ss_pred EEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCC------CcCCCCCCCchhH---HHHHHH
Q 025135 97 RMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYG------QTESGRPGTEDEE---AQLLRT 167 (257)
Q Consensus 97 rls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~ 167 (257)
||+++ .+.++...+++.+++.| +|.|.+.+....... ....++.++.+.. ...++.
T Consensus 216 KLsP~---------~~~~~i~~ia~~~~~~G------adGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~ 280 (335)
T TIGR01036 216 KIAPD---------LTESDLEDIADSLVELG------IDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRR 280 (335)
T ss_pred EeCCC---------CCHHHHHHHHHHHHHhC------CcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHH
Confidence 99985 23456788999999999 788877653321100 0012333333322 344556
Q ss_pred HHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-chHHHHHHcC
Q 025135 168 WRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN-PDLVLRFKLN 218 (257)
Q Consensus 168 ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad-P~l~~k~~~g 218 (257)
+++.+ ++|||++||+ |++++.+.|..| +|+|++|++++.+ |+|+.++.++
T Consensus 281 ~~~~~~~~ipiig~GGI~~~~da~e~l~aG-A~~Vqv~ta~~~~Gp~~~~~i~~~ 334 (335)
T TIGR01036 281 LYAELQGRLPIIGVGGISSAQDALEKIRAG-ASLLQIYSGFIYWGPPLVKEIVKE 334 (335)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CcHHHhhHHHHHhCchHHHHHHhh
Confidence 66666 5899999999 999999999998 9999999999985 9999999875
No 41
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.56 E-value=1.6e-13 Score=127.07 Aligned_cols=167 Identities=13% Similarity=0.078 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCc-CCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccC
Q 025135 23 VIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI-NDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPA 101 (257)
Q Consensus 23 ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~-N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~ 101 (257)
..++|.+.|+++.++|+|+||||.+| |++ +.|. .|..+......+.+|+++||+.+. .||++||+++
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSC---------Pn~~~~r~--~g~~~gq~~e~~~~i~~~Vk~~~~-iPv~vKLsPn 192 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSC---------PHGMPERK--MGAAVGQDCDLLEEVCGWINAKAT-VPVWAKMTPN 192 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCC---------CCCCCcCc--cchhhccCHHHHHHHHHHHHHhhc-CceEEEeCCC
Confidence 45788899999999999999999999 764 2232 355677788999999999999874 3899999974
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC-------C-------CcCCCCCCCch---hHHHH
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY-------G-------QTESGRPGTED---EEAQL 164 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~-------~-------~~~~~~~~~~~---~~~~~ 164 (257)
..+...+++.+.+.| +|.|.+++...... . ....++.++++ .....
T Consensus 193 -----------~t~i~~ia~aa~~~G------adgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~ 255 (385)
T PLN02495 193 -----------ITDITQPARVALKSG------CEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAK 255 (385)
T ss_pred -----------hhhHHHHHHHHHHhC------CCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHH
Confidence 234567899999999 66666544221100 0 01112233232 22233
Q ss_pred HHHHHHHh------CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-chHHHHHHcCC
Q 025135 165 LRTWRRSY------QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN-PDLVLRFKLNA 219 (257)
Q Consensus 165 ~~~ir~~~------~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad-P~l~~k~~~g~ 219 (257)
++.+++.+ ++|||++||+ +.++|.+.|..| +|+|+++.+++.+ |.+++++.++.
T Consensus 256 v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aG-As~VQv~Ta~~~~Gp~vi~~i~~~L 317 (385)
T PLN02495 256 VMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLG-ADTVQVCTGVMMHGYPLVKNLCAEL 317 (385)
T ss_pred HHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhC-CCceeEeeeeeecCcHHHHHHHHHH
Confidence 44455655 4899999999 899999999998 9999999999999 99999998774
No 42
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.53 E-value=2.5e-13 Score=121.91 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHcC-CCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCC
Q 025135 24 IDQYRQAALNAIQAG-FDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAI 102 (257)
Q Consensus 24 i~~f~~AA~~a~~aG-fDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~ 102 (257)
.++|.+-+....+++ +|+||||-+| |++. . |-++......+.+++++|++.+.. ||.+||+|.
T Consensus 108 ~~~~~d~~~~~~~~~~ad~ielNiSc---------Pnt~----g-~~~l~~~~e~l~~l~~~vk~~~~~-Pv~vKl~P~- 171 (310)
T COG0167 108 EEAWADYARLLEEAGDADAIELNISC---------PNTP----G-GRALGQDPELLEKLLEAVKAATKV-PVFVKLAPN- 171 (310)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEccC---------CCCC----C-hhhhccCHHHHHHHHHHHHhcccC-ceEEEeCCC-
Confidence 345556666667777 8999999999 8743 2 546665677999999999998864 999999983
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC----------CCcCCCCCCCc---hhHHHHHHHHH
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY----------GQTESGRPGTE---DEEAQLLRTWR 169 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~ir 169 (257)
.++..++|+.++++| +|.|.+++...... .....++.+++ +.....++.++
T Consensus 172 ----------~~di~~iA~~~~~~g------~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~ 235 (310)
T COG0167 172 ----------ITDIDEIAKAAEEAG------ADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELY 235 (310)
T ss_pred ----------HHHHHHHHHHHHHcC------CcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHH
Confidence 567789999999999 78887665322111 00112333333 33445667788
Q ss_pred HHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-chHHHHHHcCC
Q 025135 170 RSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN-PDLVLRFKLNA 219 (257)
Q Consensus 170 ~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad-P~l~~k~~~g~ 219 (257)
+.++ +|||++||| |.+||.+.|..| |++|+++.+++.+ |.+++++.++.
T Consensus 236 ~~~~~~ipIIGvGGI~s~~DA~E~i~aG-A~~vQv~Tal~~~Gp~i~~~I~~~l 288 (310)
T COG0167 236 KRLGGDIPIIGVGGIETGEDALEFILAG-ASAVQVGTALIYKGPGIVKEIIKGL 288 (310)
T ss_pred HhcCCCCcEEEecCcCcHHHHHHHHHcC-CchheeeeeeeeeCchHHHHHHHHH
Confidence 8877 999999999 899999999998 9999999999999 99999998775
No 43
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.51 E-value=2.8e-13 Score=121.71 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEcc
Q 025135 21 PEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSP 100 (257)
Q Consensus 21 ~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~ 100 (257)
++.+++|++.|+++. +|+|++|||.+| |++. .+..+.+......++++.+|+.+.. ||++||++
T Consensus 108 ~~~~~d~~~~a~~~~-~~ad~lElN~Sc---------Pn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~-Pv~vKL~p 171 (295)
T PF01180_consen 108 EEEIEDWAELAKRLE-AGADALELNLSC---------PNVP-----GGRPFGQDPELVAEIVRAVREAVDI-PVFVKLSP 171 (295)
T ss_dssp SGHHHHHHHHHHHHH-HHCSEEEEESTS---------TTST-----TSGGGGGHHHHHHHHHHHHHHHHSS-EEEEEE-S
T ss_pred chhHHHHHHHHHHhc-CcCCceEEEeec---------cCCC-----CccccccCHHHHHHHHHHHHhccCC-CEEEEecC
Confidence 456788999998877 999999999999 7653 2335566677888899999988743 99999998
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC-----CCc-----CCCCCCCc---hhHHHHHHH
Q 025135 101 AIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY-----GQT-----ESGRPGTE---DEEAQLLRT 167 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~-----~~~-----~~~~~~~~---~~~~~~~~~ 167 (257)
+ +. .. ....++..+.+.| ++.|.+.+...... ... ..++.++. +.....++.
T Consensus 172 ~--~~------~~-~~~~~~~~~~~~g------~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~ 236 (295)
T PF01180_consen 172 N--FT------DI-EPFAIAAELAADG------ADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRE 236 (295)
T ss_dssp T--SS------CH-HHHHHHHHHHTHT------ECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHH
T ss_pred C--CC------ch-HHHHHHHHhhccc------eeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHH
Confidence 4 11 12 2245566666778 77776443211100 000 00111122 233456677
Q ss_pred HHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHH-hhCchHHHHHHcC
Q 025135 168 WRRSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLF-ISNPDLVLRFKLN 218 (257)
Q Consensus 168 ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~-iadP~l~~k~~~g 218 (257)
+++.++ +|||++||+ |.+++.+.|..| +|+|+++.++ ..+|++++++.++
T Consensus 237 ~~~~~~~~i~Iig~GGI~s~~da~e~l~aG-A~~Vqv~Sal~~~Gp~~~~~i~~~ 290 (295)
T PF01180_consen 237 LRKALGQDIPIIGVGGIHSGEDAIEFLMAG-ASAVQVCSALIYRGPGVIRRINRE 290 (295)
T ss_dssp HHHHTTTSSEEEEESS--SHHHHHHHHHHT-ESEEEESHHHHHHGTTHHHHHHHH
T ss_pred HHhccccceEEEEeCCcCCHHHHHHHHHhC-CCHheechhhhhcCcHHHHHHHHH
Confidence 888888 999999999 999999999998 9999999999 5799999999865
No 44
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.49 E-value=1.3e-12 Score=118.39 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHcC-CCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCC
Q 025135 24 IDQYRQAALNAIQAG-FDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAI 102 (257)
Q Consensus 24 i~~f~~AA~~a~~aG-fDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~ 102 (257)
+++|.+.|+.+.++| .|+||||.+| |++-. .-.+|-+ ...+.+|+++||+++.. ||++||+++.
T Consensus 104 ~~~~~~~a~~~~~~g~ad~iElN~Sc---------Pn~~~-~~~~g~d----~~~~~~i~~~v~~~~~~-Pv~vKlsp~~ 168 (310)
T PRK02506 104 PEETHTILKKIQASDFNGLVELNLSC---------PNVPG-KPQIAYD----FETTEQILEEVFTYFTK-PLGVKLPPYF 168 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCC---------CCCCC-ccccccC----HHHHHHHHHHHHHhcCC-ccEEecCCCC
Confidence 477788888888898 8999999999 76522 1223333 34579999999998853 8999999851
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCC-----cc----cCC---CcCCCCCCCc---hhHHHHHHH
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPR-----YT----AYG---QTESGRPGTE---DEEAQLLRT 167 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~-----~~----~~~---~~~~~~~~~~---~~~~~~~~~ 167 (257)
+.......+..+.+.| ++.+...... .+ .+. ....++.+++ +.....++.
T Consensus 169 ---------~~~~~a~~~~~~~~~g------~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~ 233 (310)
T PRK02506 169 ---------DIVHFDQAAAIFNKFP------LAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRA 233 (310)
T ss_pred ---------CHHHHHHHHHHhCcCc------eEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHH
Confidence 2233333444444556 5555443210 01 000 0111222222 333455566
Q ss_pred HHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh-CchHHHHHHcCC
Q 025135 168 WRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS-NPDLVLRFKLNA 219 (257)
Q Consensus 168 ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia-dP~l~~k~~~g~ 219 (257)
+++.+ ++|||++||+ +.++|.+.|..| +|+|+++.+++. +|.++.++.++.
T Consensus 234 ~~~~~~~~ipIig~GGI~s~~da~e~i~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L 288 (310)
T PRK02506 234 FYQRLNPSIQIIGTGGVKTGRDAFEHILCG-ASMVQVGTALHKEGPAVFERLTKEL 288 (310)
T ss_pred HHHhcCCCCCEEEECCCCCHHHHHHHHHcC-CCHHhhhHHHHHhChHHHHHHHHHH
Confidence 77777 5899999999 999999999998 999999999998 799999998775
No 45
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=99.46 E-value=1.5e-12 Score=119.84 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccC
Q 025135 23 VIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPA 101 (257)
Q Consensus 23 ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~ 101 (257)
..++++++|++++++||++|+||.|+++++. ||.++..++|++||+++|++ .|.++.+..
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-------------------~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~ 199 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG-------------------EDLREDLARVRAVREAVGPDVDLMVDANGR 199 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch-------------------HHHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 4567889999999999999999999976654 89999999999999999987 677777531
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG 181 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~ 181 (257)
.+.++++++++.|++.+ +.|++ +|. .+.....++.+++.+++||++.+.
T Consensus 200 ---------~~~~~a~~~~~~l~~~~------i~~iE--qP~--------------~~~~~~~~~~l~~~~~ipi~~dE~ 248 (357)
T cd03316 200 ---------WDLAEAIRLARALEEYD------LFWFE--EPV--------------PPDDLEGLARLRQATSVPIAAGEN 248 (357)
T ss_pred ---------CCHHHHHHHHHHhCccC------CCeEc--CCC--------------CccCHHHHHHHHHhCCCCEEeccc
Confidence 35788999999999988 88886 441 112345667899999999999998
Q ss_pred C-CHHHHHHHHHcCCCcEEEec
Q 025135 182 F-TRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 182 i-t~~~a~~~l~~g~~D~V~ig 202 (257)
+ +++++.++++++.+|+|.+-
T Consensus 249 ~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 249 LYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred cccHHHHHHHHHhCCCCEEecC
Confidence 8 99999999999999999764
No 46
>PLN02826 dihydroorotate dehydrogenase
Probab=99.43 E-value=1.1e-11 Score=115.73 Aligned_cols=167 Identities=18% Similarity=0.177 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHh--------CCC
Q 025135 21 PEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAI--------GAD 92 (257)
Q Consensus 21 ~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~v--------g~~ 92 (257)
++.+++|++.++.+.. ..|.+|||-+| |++-.- ..+.+ ...+.+++++|+++. ...
T Consensus 200 ~~~~~Dy~~~~~~~~~-~aDylelNiSc---------PNtpgl-----r~lq~-~~~l~~ll~~V~~~~~~~~~~~~~~~ 263 (409)
T PLN02826 200 EDAAADYVQGVRALSQ-YADYLVINVSS---------PNTPGL-----RKLQG-RKQLKDLLKKVLAARDEMQWGEEGPP 263 (409)
T ss_pred cccHHHHHHHHHHHhh-hCCEEEEECCC---------CCCCCc-----ccccC-hHHHHHHHHHHHHHHHHhhhccccCC
Confidence 4567899999988864 58999999999 875210 12222 345677777777553 123
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCC-------CcCCCCCCCch---hHH
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYG-------QTESGRPGTED---EEA 162 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~-------~~~~~~~~~~~---~~~ 162 (257)
||.+||+++ .+.++..++++.+.+.| +|-|.+++....... ....++.++.+ ...
T Consensus 264 Pv~vKlaPd---------l~~~di~~ia~~a~~~G------~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl 328 (409)
T PLN02826 264 PLLVKIAPD---------LSKEDLEDIAAVALALG------IDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLST 328 (409)
T ss_pred ceEEecCCC---------CCHHHHHHHHHHHHHcC------CCEEEEEcccCcCccchhcccccccCCCcCCccccHHHH
Confidence 899999974 24556788999999999 777777653321110 01122333333 334
Q ss_pred HHHHHHHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-chHHHHHHcCC
Q 025135 163 QLLRTWRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN-PDLVLRFKLNA 219 (257)
Q Consensus 163 ~~~~~ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad-P~l~~k~~~g~ 219 (257)
..++.+++.+ ++|||++||| |.+++.+.|..| +++|+++++++.+ |.++.++.++.
T Consensus 329 ~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AG-As~VQv~Ta~~~~Gp~~i~~I~~eL 388 (409)
T PLN02826 329 EVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAG-ASLVQLYTAFAYEGPALIPRIKAEL 388 (409)
T ss_pred HHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhC-CCeeeecHHHHhcCHHHHHHHHHHH
Confidence 5666787877 6899999999 999999999998 9999999999985 99999998764
No 47
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.35 E-value=1.6e-11 Score=113.78 Aligned_cols=168 Identities=14% Similarity=0.092 Sum_probs=120.1
Q ss_pred HHHHHHHHHHH-HHcCCCEEEecccccchhhhcCCCCcCCcCCCCCC-chhhHhhHHHHHHHHHHHHhCCCeEEEEEccC
Q 025135 24 IDQYRQAALNA-IQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG-SIENRCRFLMQLVREVIVAIGADRVGVRMSPA 101 (257)
Q Consensus 24 i~~f~~AA~~a-~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGG-s~enR~r~~~eiv~aiR~~vg~~~v~vrls~~ 101 (257)
.+...+||... ..+-.|.|+||+|| |.-=.-. +-|| +|.||.-.+.++|+++....+.-||.|||+-
T Consensus 331 pdt~~kaaq~i~e~~~VDFIDlN~GC---------PIDlvy~-qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRT- 399 (614)
T KOG2333|consen 331 PDTAAKAAQVIAETCDVDFIDLNMGC---------PIDLVYR-QGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRT- 399 (614)
T ss_pred hHHHHHHHHHHHhhcceeeeeccCCC---------Chheeec-cCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEec-
Confidence 35566777544 45789999999999 5421111 2344 5999999999999999887776589999984
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHH-hcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-C-CcEEE
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLN-KLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-Q-GTFIC 178 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~-~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~-~pvi~ 178 (257)
++.+ ....+..++..+. +.| ++.+++|++...+-+ ++...|.++..+.+.. + +|+|+
T Consensus 400 -G~ke-----g~~~a~~Li~~i~newg------~savTlHGRSRqQRY--------TK~AnWdYi~e~a~~ak~~l~liG 459 (614)
T KOG2333|consen 400 -GTKE-----GHPVAHELIPRIVNEWG------ASAVTLHGRSRQQRY--------TKSANWDYIEECADKAKSALPLIG 459 (614)
T ss_pred -cccc-----CchhHHHHHHHHhhccC------cceEEecCchhhhhh--------hcccChHHHHHHHHhcccCceeEe
Confidence 2221 1234566777777 778 889999876544322 2333456666666554 3 79999
Q ss_pred eCCC-CHHHHHHHHHcC-CCcEEEechHHhhCchHHHHHHcCCCCC
Q 025135 179 SGGF-TRELGIQALAED-GADLVAYGRLFISNPDLVLRFKLNAPLN 222 (257)
Q Consensus 179 ~G~i-t~~~a~~~l~~g-~~D~V~igR~~iadP~l~~k~~~g~~~~ 222 (257)
+|.+ +.+|-.+-+..+ .+|-||||||+|--||++..|++.+-..
T Consensus 460 NGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD 505 (614)
T KOG2333|consen 460 NGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWD 505 (614)
T ss_pred cCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCC
Confidence 9999 999955555544 5999999999999999999999876543
No 48
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.31 E-value=9.9e-11 Score=105.51 Aligned_cols=132 Identities=13% Similarity=0.028 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDH 104 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~ 104 (257)
+.+.++++++.+.|+|+|+||.+| |....| +..++++.+|++++. ||.+|.-.
T Consensus 129 ~~~~~~i~~~~~~g~~~i~l~~~~---------p~~~~~-------------~~~~~i~~l~~~~~~-pvivK~v~---- 181 (299)
T cd02809 129 EITEDLLRRAEAAGYKALVLTVDT---------PVLGRR-------------LTWDDLAWLRSQWKG-PLILKGIL---- 181 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCC---------CCCCCC-------------CCHHHHHHHHHhcCC-CEEEeecC----
Confidence 456667788888999999999999 643222 355789999998864 88888532
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCC
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGF 182 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~i 182 (257)
+. +.++.++++| +|+|.++...-.... .....+..+..+++.+ ++|||++||+
T Consensus 182 -------s~----~~a~~a~~~G------~d~I~v~~~gG~~~~--------~g~~~~~~l~~i~~~~~~~ipvia~GGI 236 (299)
T cd02809 182 -------TP----EDALRAVDAG------ADGIVVSNHGGRQLD--------GAPATIDALPEIVAAVGGRIEVLLDGGI 236 (299)
T ss_pred -------CH----HHHHHHHHCC------CCEEEEcCCCCCCCC--------CCcCHHHHHHHHHHHhcCCCeEEEeCCC
Confidence 22 3478889999 899988653211110 1223456777788877 4999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
+..++.++|.-| ||+|++||+++...
T Consensus 237 ~~~~d~~kal~lG-Ad~V~ig~~~l~~~ 263 (299)
T cd02809 237 RRGTDVLKALALG-ADAVLIGRPFLYGL 263 (299)
T ss_pred CCHHHHHHHHHcC-CCEEEEcHHHHHHH
Confidence 999999999977 99999999988654
No 49
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.26 E-value=2.1e-10 Score=95.07 Aligned_cols=123 Identities=31% Similarity=0.342 Sum_probs=88.6
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDS 110 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~ 110 (257)
|++++++|+|+|+||+.|+|+ .++..++++++|+.++..+++++++.....
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~-----------------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~------ 127 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL-----------------------AREDLELIRELREAVPDVKVVVKLSPTGEL------ 127 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH-----------------------HHHHHHHHHHHHHhcCCceEEEEECCCCcc------
Confidence 678999999999999999776 578999999999998434899999863211
Q ss_pred CcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHH
Q 025135 111 DPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQ 189 (257)
Q Consensus 111 ~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~ 189 (257)
... .+.+.| ++++.++......... ...+........+++..++||+++||+ +++++.+
T Consensus 128 ---~~~-----~~~~~g------~d~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~ 187 (200)
T cd04722 128 ---AAA-----AAEEAG------VDEVGLGNGGGGGGGR------DAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAE 187 (200)
T ss_pred ---chh-----hHHHcC------CCEEEEcCCcCCCCCc------cCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHH
Confidence 111 167788 8888876532221110 011111233445666778999999999 6799999
Q ss_pred HHHcCCCcEEEech
Q 025135 190 ALAEDGADLVAYGR 203 (257)
Q Consensus 190 ~l~~g~~D~V~igR 203 (257)
+++.| +|+|++||
T Consensus 188 ~~~~G-ad~v~vgs 200 (200)
T cd04722 188 ALALG-ADGVIVGS 200 (200)
T ss_pred HHHhC-CCEEEecC
Confidence 99996 99999997
No 50
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.24 E-value=3.2e-10 Score=103.74 Aligned_cols=150 Identities=19% Similarity=0.116 Sum_probs=99.1
Q ss_pred HHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHH
Q 025135 35 IQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLG 114 (257)
Q Consensus 35 ~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~ 114 (257)
...+.|+++||..+. +.-.+|. .+ .+ .+-.+++|++||+.++ .||.+|..++ ..
T Consensus 138 ~~i~adal~i~ln~~---q~~~~p~------g~-~~----f~~~le~i~~i~~~~~-vPVivK~~g~--------g~--- 191 (333)
T TIGR02151 138 DMIEADALAIHLNVL---QELVQPE------GD-RN----FKGWLEKIAEICSQLS-VPVIVKEVGF--------GI--- 191 (333)
T ss_pred HHhcCCCEEEcCccc---ccccCCC------CC-cC----HHHHHHHHHHHHHhcC-CCEEEEecCC--------CC---
Confidence 346789999998652 2222221 11 12 2347799999999985 3899998753 01
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCC----------CCCchhHHHHHHHHHH-HhCCcEEEeCCC-
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGR----------PGTEDEEAQLLRTWRR-SYQGTFICSGGF- 182 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ir~-~~~~pvi~~G~i- 182 (257)
..+.++.|+++| +|+|+++.............+ ..........+..+++ ..++|||++||+
T Consensus 192 -~~~~a~~L~~aG------vd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~ 264 (333)
T TIGR02151 192 -SKEVAKLLADAG------VSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLR 264 (333)
T ss_pred -CHHHHHHHHHcC------CCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCC
Confidence 246789999999 999999763221100000000 0000112234445565 457999999999
Q ss_pred CHHHHHHHHHcCCCcEEEechHHh-----hCchHHHHHHcC
Q 025135 183 TRELGIQALAEDGADLVAYGRLFI-----SNPDLVLRFKLN 218 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~igR~~i-----adP~l~~k~~~g 218 (257)
++.++.++|..| ||+|++||+++ ..|+.+.++.+.
T Consensus 265 ~~~di~kaLalG-Ad~V~igr~~L~~~~~~g~~~v~~~i~~ 304 (333)
T TIGR02151 265 TGLDVAKAIALG-ADAVGMARPFLKAALDEGEEAVIEEIEL 304 (333)
T ss_pred CHHHHHHHHHhC-CCeehhhHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999998 99999999999 789987776654
No 51
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.04 E-value=6.3e-09 Score=95.85 Aligned_cols=150 Identities=19% Similarity=0.122 Sum_probs=98.4
Q ss_pred HHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHH
Q 025135 35 IQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLG 114 (257)
Q Consensus 35 ~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~ 114 (257)
..++.|+++||..++ +.-.+|. |. ...+-++++|++||+.++ .||.+|..++ ..+
T Consensus 145 ~~~~adal~l~l~~~---qe~~~p~---------g~--~~f~~~le~i~~i~~~~~-vPVivK~~g~--------g~s-- 199 (352)
T PRK05437 145 EMIEADALQIHLNPL---QELVQPE---------GD--RDFRGWLDNIAEIVSALP-VPVIVKEVGF--------GIS-- 199 (352)
T ss_pred HhcCCCcEEEeCccc---hhhcCCC---------Cc--ccHHHHHHHHHHHHHhhC-CCEEEEeCCC--------CCc--
Confidence 346899999997652 2222232 11 113457899999999985 3899999852 122
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCC-----C-----cCCCCCCCchhHHHHHHHHHHH-hCCcEEEeCCC-
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYG-----Q-----TESGRPGTEDEEAQLLRTWRRS-YQGTFICSGGF- 182 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~ir~~-~~~pvi~~G~i- 182 (257)
.+.++.|++.| +|+|+++...-.... . ...............+..+++. .++|||++||+
T Consensus 200 --~~~a~~l~~~G------vd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~ 271 (352)
T PRK05437 200 --KETAKRLADAG------VKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIR 271 (352)
T ss_pred --HHHHHHHHHcC------CCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCC
Confidence 46788899999 999998653210000 0 0000000011233456667777 48999999999
Q ss_pred CHHHHHHHHHcCCCcEEEechHHhhC-----ch----HHHHHHcC
Q 025135 183 TRELGIQALAEDGADLVAYGRLFISN-----PD----LVLRFKLN 218 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~igR~~iad-----P~----l~~k~~~g 218 (257)
+..++.++|..| ||+|++||+++.. ++ +++++.++
T Consensus 272 ~~~dv~k~l~~G-Ad~v~ig~~~l~~~~~~g~~~v~~~i~~~~~e 315 (352)
T PRK05437 272 NGLDIAKALALG-ADAVGMAGPFLKAALEGGEEAVIELIEQWIEE 315 (352)
T ss_pred CHHHHHHHHHcC-CCEEEEhHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999998 9999999999976 55 55555543
No 52
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.95 E-value=2.6e-08 Score=90.32 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAI 102 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~ 102 (257)
.+++++.++.+++.||+.|+|+.|. ++ +...++|++||+++| + .|.+..+.
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~g~---------------------~~----~~d~~~v~~lr~~~g-~~~l~vD~n~-- 186 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKLGG---------------------DL----EDDIERIRAIREAAP-DARLRVDANQ-- 186 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCC---------------------Ch----hhHHHHHHHHHHhCC-CCeEEEeCCC--
Confidence 3556778888888999999999753 11 235688999999999 5 56666653
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
. .+.+++.++++.|++.+ +.|++ +|. .+.....++++++..++||++++.+
T Consensus 187 ~-------~~~~~A~~~~~~l~~~~------l~~iE--eP~--------------~~~d~~~~~~L~~~~~ipIa~~E~~ 237 (316)
T cd03319 187 G-------WTPEEAVELLRELAELG------VELIE--QPV--------------PAGDDDGLAYLRDKSPLPIMADESC 237 (316)
T ss_pred C-------cCHHHHHHHHHHHHhcC------CCEEE--CCC--------------CCCCHHHHHHHHhcCCCCEEEeCCC
Confidence 2 34678999999999998 88886 542 1122345677999999999999988
Q ss_pred -CHHHHHHHHHcCCCcEEEechHH
Q 025135 183 -TRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~ 205 (257)
+++++.++++.+.+|+|.+--..
T Consensus 238 ~~~~~~~~~~~~~~~d~v~~~~~~ 261 (316)
T cd03319 238 FSAADAARLAGGGAYDGINIKLMK 261 (316)
T ss_pred CCHHHHHHHHhcCCCCEEEEeccc
Confidence 89999999999999999875333
No 53
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.94 E-value=3e-08 Score=90.47 Aligned_cols=143 Identities=20% Similarity=0.169 Sum_probs=92.1
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSD 111 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~ 111 (257)
+....++.|++|||..+ ++...+|. |. ...+-.++.|+.+++.+.. ||.+|.++. +.
T Consensus 134 ~~i~~~~adalel~l~~---~q~~~~~~---------~~--~df~~~~~~i~~l~~~~~v-PVivK~~g~--------g~ 190 (326)
T cd02811 134 RAVEMIEADALAIHLNP---LQEAVQPE---------GD--RDFRGWLERIEELVKALSV-PVIVKEVGF--------GI 190 (326)
T ss_pred HHHHhcCCCcEEEeCcc---hHhhcCCC---------CC--cCHHHHHHHHHHHHHhcCC-CEEEEecCC--------CC
Confidence 33345689999999754 22222232 11 1133577889999998853 899999853 12
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCC------CcCCC----C--CCCchhHHHHHHHHHHHh-CCcEEE
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYG------QTESG----R--PGTEDEEAQLLRTWRRSY-QGTFIC 178 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~------~~~~~----~--~~~~~~~~~~~~~ir~~~-~~pvi~ 178 (257)
+ .+.++.|++.| +|+|++++..-.... ..... . ..........+..+++.+ ++|||+
T Consensus 191 s----~~~a~~l~~~G------vd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIia 260 (326)
T cd02811 191 S----RETAKRLADAG------VKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIA 260 (326)
T ss_pred C----HHHHHHHHHcC------CCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEE
Confidence 2 35788899999 999998652110000 00000 0 000111234556677777 899999
Q ss_pred eCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 179 SGGF-TRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 179 ~G~i-t~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
+||+ +..++.++|..| ||+|++||+++.-
T Consensus 261 sGGIr~~~dv~kal~lG-Ad~V~i~~~~L~~ 290 (326)
T cd02811 261 SGGIRNGLDIAKALALG-ADLVGMAGPFLKA 290 (326)
T ss_pred ECCCCCHHHHHHHHHhC-CCEEEEcHHHHHH
Confidence 9999 899999999998 9999999998753
No 54
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.92 E-value=3.9e-08 Score=91.07 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
+++++.|+++++.||++|+|+.+. +. -.+...+.|++||+++|++ .|.+..+. .
T Consensus 145 ~~~~~~a~~~~~~Gf~~~Kik~~~--------------------~~---~~~~di~~i~~vR~~~G~~~~l~vDan~--~ 199 (368)
T cd03329 145 EAYADFAEECKALGYRAIKLHPWG--------------------PG---VVRRDLKACLAVREAVGPDMRLMHDGAH--W 199 (368)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCC--------------------ch---hHHHHHHHHHHHHHHhCCCCeEEEECCC--C
Confidence 567888888999999999997432 00 0234788999999999987 57766653 1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF- 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i- 182 (257)
.+.++++++++.|++.+ +.|++ +|- .+......+.+++..++||++...+
T Consensus 200 -------~~~~~A~~~~~~l~~~~------l~~iE--eP~--------------~~~d~~~~~~l~~~~~ipIa~~E~~~ 250 (368)
T cd03329 200 -------YSRADALRLGRALEELG------FFWYE--DPL--------------REASISSYRWLAEKLDIPILGTEHSR 250 (368)
T ss_pred -------cCHHHHHHHHHHhhhcC------CCeEe--CCC--------------CchhHHHHHHHHhcCCCCEEccCccc
Confidence 35788999999999998 88887 541 1122345667999999999887777
Q ss_pred C-HHHHHHHHHcCCCcEEEe
Q 025135 183 T-RELGIQALAEDGADLVAY 201 (257)
Q Consensus 183 t-~~~a~~~l~~g~~D~V~i 201 (257)
+ ++++.++++.+.+|+|.+
T Consensus 251 ~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 251 GALESRADWVLAGATDFLRA 270 (368)
T ss_pred CcHHHHHHHHHhCCCCEEec
Confidence 7 999999999999999965
No 55
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.89 E-value=7.5e-08 Score=85.15 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
+++++.|+.+.+.||..+.|+.+. . ..--.++|++||+++|++ .|.+..+. .
T Consensus 87 ~~~~~~~~~~~~~G~~~~KiKvg~---------------------~----~~~d~~~v~~vr~~~g~~~~l~vDan~--~ 139 (265)
T cd03315 87 AEVAEEARRALEAGFRTFKLKVGR---------------------D----PARDVAVVAALREAVGDDAELRVDANR--G 139 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCC---------------------C----HHHHHHHHHHHHHhcCCCCEEEEeCCC--C
Confidence 456677788888999999998652 0 134568899999999875 44444332 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF- 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i- 182 (257)
.+.+++.++++.|++.+ ++|++ +|. .+...+..+.+++.+++||++.+.+
T Consensus 140 -------~~~~~a~~~~~~l~~~~------i~~iE--eP~--------------~~~d~~~~~~l~~~~~ipia~dE~~~ 190 (265)
T cd03315 140 -------WTPKQAIRALRALEDLG------LDYVE--QPL--------------PADDLEGRAALARATDTPIMADESAF 190 (265)
T ss_pred -------cCHHHHHHHHHHHHhcC------CCEEE--CCC--------------CcccHHHHHHHHhhCCCCEEECCCCC
Confidence 34788999999999999 89987 441 1122456678999999999999988
Q ss_pred CHHHHHHHHHcCCCcEEEec
Q 025135 183 TRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~ig 202 (257)
+++++.++++++.+|+|.+=
T Consensus 191 ~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 191 TPHDAFRELALGAADAVNIK 210 (265)
T ss_pred CHHHHHHHHHhCCCCEEEEe
Confidence 89999999999999999874
No 56
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.79 E-value=1e-07 Score=83.44 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=83.9
Q ss_pred chhhHhhHHHHHHHHHHHHhCCCeEEEEEccC----CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc
Q 025135 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSPA----IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT 145 (257)
Q Consensus 70 s~enR~r~~~eiv~aiR~~vg~~~v~vrls~~----~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~ 145 (257)
.+.+...++.+++++.++.+- +++.+... .+|. .+.....++++.+++.| ++.+.++.....
T Consensus 106 ~~l~~p~l~~~i~~~~~~~i~---vsld~~~~~v~~~Gw~-----~~~~~~~~~~~~l~~~G------~~~iiv~~~~~~ 171 (241)
T PRK14024 106 AALENPEWCARVIAEHGDRVA---VGLDVRGHTLAARGWT-----RDGGDLWEVLERLDSAG------CSRYVVTDVTKD 171 (241)
T ss_pred hHhCCHHHHHHHHHHhhhhEE---EEEEEeccEeccCCee-----ecCccHHHHHHHHHhcC------CCEEEEEeecCC
Confidence 345668899999988765432 22222100 1121 12234578899999999 888877764333
Q ss_pred cCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHH--cCCCcEEEechHHhhCchHHHHH
Q 025135 146 AYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALA--EDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~--~g~~D~V~igR~~iadP~l~~k~ 215 (257)
+.. . . ..+..++++++.+++|||++|++ +++++.++.+ ..+||.|++||+++..+.=+..+
T Consensus 172 g~~-------~-G-~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~ 235 (241)
T PRK14024 172 GTL-------T-G-PNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEA 235 (241)
T ss_pred CCc-------c-C-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHH
Confidence 221 1 1 24577888999999999999999 8999998863 34599999999999887555544
No 57
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.77 E-value=4.8e-07 Score=82.34 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=87.9
Q ss_pred HHHHHHHHcCC--CEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE-EccCCCCC
Q 025135 29 QAALNAIQAGF--DGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR-MSPAIDHL 105 (257)
Q Consensus 29 ~AA~~a~~aGf--DgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr-ls~~~~~~ 105 (257)
+-+....+||. |.|.|.++||+ ...+.|+|+.||+.++.-+|.+. +.
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh------------------------~~~~~e~I~~ir~~~p~~~vi~g~V~------ 149 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGH------------------------SDSVINMIQHIKKHLPETFVIAGNVG------ 149 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc------------------------hHHHHHHHHHHHhhCCCCeEEEEecC------
Confidence 44455567855 99999999843 23578889999999865455543 33
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CH
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TR 184 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~ 184 (257)
+.+ -++.|.++| +|++.+..............+.....+....+..+++.+++|||+.||| ++
T Consensus 150 ------t~e----~a~~l~~aG------ad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~ 213 (326)
T PRK05458 150 ------TPE----AVRELENAG------ADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTH 213 (326)
T ss_pred ------CHH----HHHHHHHcC------cCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCH
Confidence 233 456788899 8887654221111000000001111122334677788889999999999 99
Q ss_pred HHHHHHHHcCCCcEEEechHHhh
Q 025135 185 ELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~igR~~ia 207 (257)
.++.++|.-| +|+|++|++|+.
T Consensus 214 ~Di~KaLa~G-A~aV~vG~~~~~ 235 (326)
T PRK05458 214 GDIAKSIRFG-ATMVMIGSLFAG 235 (326)
T ss_pred HHHHHHHHhC-CCEEEechhhcC
Confidence 9999999997 999999999984
No 58
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.75 E-value=8.2e-08 Score=83.84 Aligned_cols=151 Identities=16% Similarity=0.170 Sum_probs=95.7
Q ss_pred ChhhHHHHHHHH------------HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHH
Q 025135 16 QTSEIPEVIDQY------------RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVR 83 (257)
Q Consensus 16 t~~eI~~ii~~f------------~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~ 83 (257)
..+-|+++.+.. .+.++.+.+.|+|+|.+..+. ..+..++.++++
T Consensus 59 ~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~-----------------------~~~p~~~~~i~~ 115 (243)
T cd04731 59 MLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAA-----------------------VENPELIREIAK 115 (243)
T ss_pred cHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchh-----------------------hhChHHHHHHHH
Confidence 345566666654 456667777899999876433 123455666555
Q ss_pred HHHHHhCCC--eEEE--EEccC---CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCC
Q 025135 84 EVIVAIGAD--RVGV--RMSPA---IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPG 156 (257)
Q Consensus 84 aiR~~vg~~--~v~v--rls~~---~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~ 156 (257)
. ++.+ .+.+ |.... .-...++...+.....++++.+++.| ++++.++.......
T Consensus 116 ~----~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G------~d~i~v~~i~~~g~--------- 176 (243)
T cd04731 116 R----FGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELG------AGEILLTSMDRDGT--------- 176 (243)
T ss_pred H----cCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCC------CCEEEEeccCCCCC---------
Confidence 4 4433 2232 22110 00001111122344577899999999 89988875321111
Q ss_pred CchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 157 TEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 157 ~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
........++.+++.+++||+++|++ ++++++++++.++||.|++||++...
T Consensus 177 ~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~ 229 (243)
T cd04731 177 KKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred CCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence 01123567788888889999999999 89999999998779999999999864
No 59
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.75 E-value=2.3e-07 Score=80.87 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeE--EEEEccC----C
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRV--GVRMSPA----I 102 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v--~vrls~~----~ 102 (257)
+.++.+.++|+|+|-|.... .++. +.++.+++.+|.+.| ++.+... .
T Consensus 89 ~~~~~~~~~Ga~~v~iGs~~-----------------------~~~~----~~~~~i~~~~g~~~i~~sid~~~~~v~~~ 141 (241)
T PRK13585 89 EDAASLLDLGVDRVILGTAA-----------------------VENP----EIVRELSEEFGSERVMVSLDAKDGEVVIK 141 (241)
T ss_pred HHHHHHHHcCCCEEEEChHH-----------------------hhCh----HHHHHHHHHhCCCcEEEEEEeeCCEEEEC
Confidence 55777888999998663221 1222 345566666765533 3332100 1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
++.. .+.....++++.+++.| ++.++++....... . .....+.++.+++.+++||+++||+
T Consensus 142 g~~~----~~~~~~~~~~~~~~~~G------~~~i~~~~~~~~g~-------~--~g~~~~~i~~i~~~~~iPvia~GGI 202 (241)
T PRK13585 142 GWTE----KTGYTPVEAAKRFEELG------AGSILFTNVDVEGL-------L--EGVNTEPVKELVDSVDIPVIASGGV 202 (241)
T ss_pred CCcc----cCCCCHHHHHHHHHHcC------CCEEEEEeecCCCC-------c--CCCCHHHHHHHHHhCCCCEEEeCCC
Confidence 1111 11113467888899999 88888765321111 0 1123466788888899999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
+++++.++++.| +|.|++|++++.+|..+.+++
T Consensus 203 ~~~~di~~~~~~G-a~gv~vgsa~~~~~~~~~~~~ 236 (241)
T PRK13585 203 TTLDDLRALKEAG-AAGVVVGSALYKGKFTLEEAI 236 (241)
T ss_pred CCHHHHHHHHHcC-CCEEEEEHHHhcCCcCHHHHH
Confidence 799999976665 999999999999999888765
No 60
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.68 E-value=4.1e-07 Score=78.90 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+++.| ++++.++....... ........++++++.+++||+++||+ +++++++++.+.
T Consensus 155 ~~~~~~~~~~~G------~d~i~i~~i~~~g~---------~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~ 219 (232)
T TIGR03572 155 PVEWAREAEQLG------AGEILLNSIDRDGT---------MKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEA 219 (232)
T ss_pred HHHHHHHHHHcC------CCEEEEeCCCccCC---------cCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHc
Confidence 467899999999 89988875221111 11224577888999999999999999 899999977777
Q ss_pred CCcEEEechHH
Q 025135 195 GADLVAYGRLF 205 (257)
Q Consensus 195 ~~D~V~igR~~ 205 (257)
+||.|++|++|
T Consensus 220 gadgV~vg~a~ 230 (232)
T TIGR03572 220 GASAVAAASLF 230 (232)
T ss_pred CCCEEEEehhh
Confidence 79999999987
No 61
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.68 E-value=6.3e-07 Score=77.19 Aligned_cols=135 Identities=21% Similarity=0.233 Sum_probs=89.8
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDAT 108 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~ 108 (257)
+-++.|.++|.|.|-+-+.+.+ +|. | ..+.++++.+|+. ..-++.+..+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~------~p~--------~-------~~~~~~i~~~~~~-~~i~vi~~v~--------- 127 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRP------RPD--------G-------ETLAELVKRIKEY-PGQLLMADCS--------- 127 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC------CCC--------C-------CCHHHHHHHHHhC-CCCeEEEeCC---------
Confidence 4567888999999988654410 010 0 2456888888886 2225555433
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHH
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELG 187 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a 187 (257)
+.++ ++.+.+.| +||+.++......... .........++.+++.+++||++.||+ +++++
T Consensus 128 ---t~ee----~~~a~~~G------~d~i~~~~~g~t~~~~------~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~ 188 (221)
T PRK01130 128 ---TLEE----GLAAQKLG------FDFIGTTLSGYTEETK------KPEEPDFALLKELLKAVGCPVIAEGRINTPEQA 188 (221)
T ss_pred ---CHHH----HHHHHHcC------CCEEEcCCceeecCCC------CCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 2333 35688889 8888654322221100 011223467788999899999999999 89999
Q ss_pred HHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 188 IQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 188 ~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
+++++.| +|+|++|+.++ +|+++.|.
T Consensus 189 ~~~l~~G-adgV~iGsai~-~~~~~~~~ 214 (221)
T PRK01130 189 KKALELG-AHAVVVGGAIT-RPEEITKW 214 (221)
T ss_pred HHHHHCC-CCEEEEchHhc-CCHHHHHH
Confidence 9999988 99999999865 56666554
No 62
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.67 E-value=1.3e-07 Score=82.53 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHc
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAE 193 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~ 193 (257)
+..++++.+++.| ++.++++....... ..+.....++.+++.+++||+++||+ +.++++++++.
T Consensus 28 d~~~~a~~~~~~G------~~~i~i~d~~~~~~---------~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~ 92 (243)
T cd04731 28 DPVELAKRYNEQG------ADELVFLDITASSE---------GRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRA 92 (243)
T ss_pred CHHHHHHHHHHCC------CCEEEEEcCCcccc---------cCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc
Confidence 4567899999999 88888776432211 12334577888999999999999999 89999999998
Q ss_pred CCCcEEEechHHhhCchHHHHHHcC
Q 025135 194 DGADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 194 g~~D~V~igR~~iadP~l~~k~~~g 218 (257)
| ||.|++||+++.||+++.++.+.
T Consensus 93 G-~~~v~ig~~~~~~p~~~~~i~~~ 116 (243)
T cd04731 93 G-ADKVSINSAAVENPELIREIAKR 116 (243)
T ss_pred C-CceEEECchhhhChHHHHHHHHH
Confidence 7 99999999999999999998763
No 63
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.67 E-value=6.3e-07 Score=77.58 Aligned_cols=83 Identities=11% Similarity=-0.003 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+++.| ++++.++.....+.. .. .....++.+++.+++||+++||+ +++++.++++.|
T Consensus 148 ~~~~~~~~~~~g------a~~iii~~~~~~g~~--------~g-~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~G 212 (234)
T cd04732 148 LEELAKRFEELG------VKAIIYTDISRDGTL--------SG-PNFELYKELAAATGIPVIASGGVSSLDDIKALKELG 212 (234)
T ss_pred HHHHHHHHHHcC------CCEEEEEeecCCCcc--------CC-CCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC
Confidence 457889999999 888877643222111 11 23567788898899999999999 899999999875
Q ss_pred CCcEEEechHHhhCchHHHH
Q 025135 195 GADLVAYGRLFISNPDLVLR 214 (257)
Q Consensus 195 ~~D~V~igR~~iadP~l~~k 214 (257)
+|.|++||+++.++.=+.+
T Consensus 213 -a~gv~vg~~~~~~~~~~~~ 231 (234)
T cd04732 213 -VAGVIVGKALYEGKITLEE 231 (234)
T ss_pred -CCEEEEeHHHHcCCCCHHH
Confidence 9999999999999744443
No 64
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.66 E-value=7e-07 Score=82.32 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
+++++.|+...+.||..+.|..|. + .+.-.+.|++||+++|++ .|.+-.+. .
T Consensus 140 e~~~~~a~~~~~~Gf~~~Kikvg~---------------------~----~~~d~~~v~~vRe~~G~~~~l~vDaN~--~ 192 (352)
T cd03328 140 DRLREQLSGWVAQGIPRVKMKIGR---------------------D----PRRDPDRVAAARRAIGPDAELFVDANG--A 192 (352)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCC---------------------C----HHHHHHHHHHHHHHcCCCCeEEEECCC--C
Confidence 445566666778999999997542 0 134578899999999986 46555542 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHH--hCCcEEEeCC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRS--YQGTFICSGG 181 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~--~~~pvi~~G~ 181 (257)
.+.++++++++.|++.+ +.|++ +| ..+...+.++.+++. .++||.+...
T Consensus 193 -------~~~~~A~~~~~~l~~~~------~~~~E--eP--------------~~~~d~~~~~~l~~~~~~~iPIa~gE~ 243 (352)
T cd03328 193 -------YSRKQALALARAFADEG------VTWFE--EP--------------VSSDDLAGLRLVRERGPAGMDIAAGEY 243 (352)
T ss_pred -------CCHHHHHHHHHHHHHhC------cchhh--CC--------------CChhhHHHHHHHHhhCCCCCCEEeccc
Confidence 35788999999999998 88876 54 123345667789999 7899998777
Q ss_pred C-CHHHHHHHHHcCCCcEEEe
Q 025135 182 F-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 182 i-t~~~a~~~l~~g~~D~V~i 201 (257)
+ +..++.++++.+.+|+|.+
T Consensus 244 ~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 244 AYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred ccCHHHHHHHHHcCCCCEEec
Confidence 7 9999999999999999865
No 65
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.65 E-value=9.8e-07 Score=80.98 Aligned_cols=128 Identities=17% Similarity=0.215 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
+++++.|+.+.+.||..+.|+.+.| |. + + ....+.-.+.|++||+++|++ .|.+-.+. .
T Consensus 122 ~~~~~~a~~~~~~Gf~~~Kikvg~~--------~~-----~--~---~~~~~~d~~~v~avr~~~g~~~~l~vDan~--~ 181 (341)
T cd03327 122 DELPDEAKEYLKEGYRGMKMRFGYG--------PS-----D--G---HAGLRKNVELVRAIREAVGYDVDLMLDCYM--S 181 (341)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC--------CC-----c--c---hHHHHHHHHHHHHHHHHhCCCCcEEEECCC--C
Confidence 4456677777889999999987653 10 0 0 112355788999999999986 45555442 1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF- 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i- 182 (257)
.+.+++.++++.|++.+ +.|++ +|- .+......+.+++..++||.+...+
T Consensus 182 -------~~~~~A~~~~~~l~~~~------~~~iE--eP~--------------~~~d~~~~~~l~~~~~~pIa~gE~~~ 232 (341)
T cd03327 182 -------WNLNYAIKMARALEKYE------LRWIE--EPL--------------IPDDIEGYAELKKATGIPISTGEHEY 232 (341)
T ss_pred -------CCHHHHHHHHHHhhhcC------Ccccc--CCC--------------CccCHHHHHHHHhcCCCCeEeccCcc
Confidence 35788999999999998 88887 552 2223456677999999999888777
Q ss_pred CHHHHHHHHHcCCCcEEEe
Q 025135 183 TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~i 201 (257)
++.++.++++.+.+|+|.+
T Consensus 233 ~~~~~~~~i~~~a~d~i~~ 251 (341)
T cd03327 233 TVYGFKRLLEGRAVDILQP 251 (341)
T ss_pred CHHHHHHHHHcCCCCEEec
Confidence 8999999999999999974
No 66
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.64 E-value=4.2e-07 Score=78.65 Aligned_cols=78 Identities=12% Similarity=0.039 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+++.| ++.+.++........ ....+..++++++.+++|||++||+ +++++.++++.|
T Consensus 148 ~~e~~~~~~~~g------~~~ii~~~~~~~g~~---------~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g 212 (233)
T PRK00748 148 AEDLAKRFEDAG------VKAIIYTDISRDGTL---------SGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLG 212 (233)
T ss_pred HHHHHHHHHhcC------CCEEEEeeecCcCCc---------CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 356889999999 776655542222111 1123567788898889999999999 999999999998
Q ss_pred CCcEEEechHHhhC
Q 025135 195 GADLVAYGRLFISN 208 (257)
Q Consensus 195 ~~D~V~igR~~iad 208 (257)
+||.|++||+++..
T Consensus 213 ~~~gv~vg~a~~~~ 226 (233)
T PRK00748 213 AVEGVIVGRALYEG 226 (233)
T ss_pred CccEEEEEHHHHcC
Confidence 89999999999754
No 67
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=98.64 E-value=6.5e-07 Score=83.04 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAI 102 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~ 102 (257)
.+.++.+++...+.||+.++|..+++. ...-.+.|++||+++|++ .|.+-.+.
T Consensus 144 ~e~~~~~~~~~~~~G~~~~Klk~g~~~------------------------~~~d~~~v~avRe~~g~~~~l~iDan~-- 197 (372)
T COG4948 144 EEMAAEAARALVELGFKALKLKVGVGD------------------------GDEDLERVRALREAVGDDVRLMVDANG-- 197 (372)
T ss_pred HHHHHHHHHHHHhcCCceEEecCCCCc------------------------hHHHHHHHHHHHHHhCCCceEEEeCCC--
Confidence 566778888888899999999988721 115678899999999975 56665553
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
. .+.++++.+++.|++.+ +.|++ +| ..+.....++++++.+++||.+...+
T Consensus 198 ~-------~~~~~A~~~~~~l~~~~------l~~iE--eP--------------~~~~d~~~~~~l~~~~~~PIa~gEs~ 248 (372)
T COG4948 198 G-------WTLEEAIRLARALEEYG------LEWIE--EP--------------LPPDDLEGLRELRAATSTPIAAGESV 248 (372)
T ss_pred C-------cCHHHHHHHHHHhcccC------cceEE--CC--------------CCccCHHHHHHHHhcCCCCEecCccc
Confidence 2 35678899999999999 89987 65 23344567788999888999988887
Q ss_pred -CHHHHHHHHHcCCCcEEEe
Q 025135 183 -TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~i 201 (257)
+.+++.++++.|.+|+|.+
T Consensus 249 ~~~~~~~~l~~~~a~div~~ 268 (372)
T COG4948 249 YTRWDFRRLLEAGAVDIVQP 268 (372)
T ss_pred ccHHHHHHHHHcCCCCeecC
Confidence 9999999999999999976
No 68
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.62 E-value=3.9e-07 Score=80.54 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+++.| ++.+.++.....+.. ....++.++.+++.+++|||++||+ +.+++.+++++.
T Consensus 154 ~~e~~~~~~~~g------~~~ii~~~i~~~G~~---------~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~ 218 (258)
T PRK01033 154 PLELAKEYEALG------AGEILLNSIDRDGTM---------KGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNL 218 (258)
T ss_pred HHHHHHHHHHcC------CCEEEEEccCCCCCc---------CCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHC
Confidence 467889999999 787777654332211 1124567788999999999999999 899999999655
Q ss_pred CCcEEEechHHhhCchHHHHHH
Q 025135 195 GADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 195 ~~D~V~igR~~iadP~l~~k~~ 216 (257)
+||.|.+|++|.-.-+-+.+++
T Consensus 219 GvdgVivg~a~~~~~~~~~~~~ 240 (258)
T PRK01033 219 GADAAAAGSLFVFKGVYKAVLI 240 (258)
T ss_pred CCCEEEEcceeeeCcccccccc
Confidence 6999999999998744444443
No 69
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.60 E-value=1.4e-06 Score=81.39 Aligned_cols=122 Identities=14% Similarity=0.232 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
+++++.|+...+.||..+.|+.|. .+ .+.-.+.|++||+++|++ .|.+-.+. .
T Consensus 162 ~~~~~~a~~~~~~Gf~~~Kikvg~--------------------~~----~~~di~~v~avRe~~G~~~~l~vDaN~--~ 215 (385)
T cd03326 162 GRLRDEMRRYLDRGYTVVKIKIGG--------------------AP----LDEDLRRIEAALDVLGDGARLAVDANG--R 215 (385)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCC--------------------CC----HHHHHHHHHHHHHhcCCCCeEEEECCC--C
Confidence 345566667778999999997652 11 233578899999999986 56665553 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF- 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i- 182 (257)
.+.++++++++.|++.+ +.|++ +|- .+.....++.+++.+++||++...+
T Consensus 216 -------w~~~~A~~~~~~l~~~~------~~~iE--eP~--------------~~~d~~~~~~L~~~~~iPIa~gEs~~ 266 (385)
T cd03326 216 -------FDLETAIAYAKALAPYG------LRWYE--EPG--------------DPLDYALQAELADHYDGPIATGENLF 266 (385)
T ss_pred -------CCHHHHHHHHHHhhCcC------CCEEE--CCC--------------CccCHHHHHHHHhhCCCCEEcCCCcC
Confidence 35788999999999998 88887 552 2233456678999999999988887
Q ss_pred CHHHHHHHHHcCCC----cEEEe
Q 025135 183 TRELGIQALAEDGA----DLVAY 201 (257)
Q Consensus 183 t~~~a~~~l~~g~~----D~V~i 201 (257)
++.++.++++.+.+ |+|.+
T Consensus 267 ~~~~~~~li~~~a~~~~~div~~ 289 (385)
T cd03326 267 SLQDARNLLRYGGMRPDRDVLQF 289 (385)
T ss_pred CHHHHHHHHHhCCccccCCEEEe
Confidence 99999999999877 98864
No 70
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.58 E-value=7.9e-07 Score=82.02 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAI 102 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~ 102 (257)
.+++++.|+...+.||..+.|+.|. + + ..--.+.|++||+++|++ .|.+..+.
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~---------~-----------~----~~~d~~~v~air~~~g~~~~l~vDaN~-- 195 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGY---------P-----------T----ADEDLAVVRSIRQAVGDGVGLMVDYNQ-- 195 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCC---------C-----------C----hHhHHHHHHHHHHhhCCCCEEEEeCCC--
Confidence 3445667777778899999998652 0 1 123467899999999986 45554442
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
. .+.++++++++.|++.+ +.|++ +|- .+.....++.+++.+++||.+...+
T Consensus 196 ~-------~~~~~A~~~~~~l~~~~------i~~iE--eP~--------------~~~d~~~~~~l~~~~~ipia~~E~~ 246 (355)
T cd03321 196 S-------LTVPEAIERGQALDQEG------LTWIE--EPT--------------LQHDYEGHARIASALRTPVQMGENW 246 (355)
T ss_pred C-------cCHHHHHHHHHHHHcCC------CCEEE--CCC--------------CCcCHHHHHHHHHhcCCCEEEcCCC
Confidence 1 35788999999999998 88987 542 1223456678999999999887777
Q ss_pred -CHHHHHHHHHcCCCcEEEe
Q 025135 183 -TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~i 201 (257)
+++++..+++.+.+|+|.+
T Consensus 247 ~~~~~~~~~i~~~~~d~i~~ 266 (355)
T cd03321 247 LGPEEMFKALSAGACDLVMP 266 (355)
T ss_pred cCHHHHHHHHHhCCCCeEec
Confidence 8999999999999999875
No 71
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.58 E-value=3.6e-07 Score=79.08 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHc
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAE 193 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~ 193 (257)
+..++++.+.+.| ++.+|++.-... ......+...++.+++.+++||+++|++ ++++++++++.
T Consensus 30 dp~~~a~~~~~~g------~d~l~v~dl~~~---------~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~ 94 (234)
T cd04732 30 DPVEVAKKWEEAG------AKWLHVVDLDGA---------KGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDL 94 (234)
T ss_pred CHHHHHHHHHHcC------CCEEEEECCCcc---------ccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHc
Confidence 3467899999999 899998753211 0012334567888999999999999999 89999999998
Q ss_pred CCCcEEEechHHhhCchHHHHHHcC
Q 025135 194 DGADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 194 g~~D~V~igR~~iadP~l~~k~~~g 218 (257)
| ||.|++|+.++.||++++++.+.
T Consensus 95 G-ad~vvigs~~l~dp~~~~~i~~~ 118 (234)
T cd04732 95 G-VSRVIIGTAAVKNPELVKELLKE 118 (234)
T ss_pred C-CCEEEECchHHhChHHHHHHHHH
Confidence 8 99999999999999999998875
No 72
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.58 E-value=4e-07 Score=80.70 Aligned_cols=146 Identities=17% Similarity=0.126 Sum_probs=94.6
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
+++|+.|.++|+|.|-++.+| |.- +|... |-+..+.. +.|++||+++. -||..+.... |
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~---------psd-~~~~g-g~~Rm~~p----~~I~aIk~~V~-iPVigk~Rig--h--- 85 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERV---------PAD-IRAAG-GVARMADP----KMIEEIMDAVS-IPVMAKARIG--H--- 85 (293)
T ss_pred HHHHHHHHHhChHHHHHccCC---------Cch-HhhcC-CeeecCCH----HHHHHHHHhCC-CCeEEeehhh--H---
Confidence 578999999999999999999 653 45544 65666655 44668898883 3777766631 1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCC-------------cccC-----------------CC-----c--
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPR-------------YTAY-----------------GQ-----T-- 150 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~-------------~~~~-----------------~~-----~-- 150 (257)
..=++.|+++| +|+|+-++.. |..+ +. +
T Consensus 86 ---------~~Ea~~L~~~G------vDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge 150 (293)
T PRK04180 86 ---------FVEAQILEALG------VDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGE 150 (293)
T ss_pred ---------HHHHHHHHHcC------CCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCC
Confidence 22355677777 6666543200 0000 00 0
Q ss_pred ----------------------CCCCC--------CCchhHHHHHHHHHHHhCCcEE--EeCCC-CHHHHHHHHHcCCCc
Q 025135 151 ----------------------ESGRP--------GTEDEEAQLLRTWRRSYQGTFI--CSGGF-TRELGIQALAEDGAD 197 (257)
Q Consensus 151 ----------------------~~~~~--------~~~~~~~~~~~~ir~~~~~pvi--~~G~i-t~~~a~~~l~~g~~D 197 (257)
+++.- .......+.++.+++..++||+ +.||| ||+++..+++.| ||
T Consensus 151 ~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~G-Ad 229 (293)
T PRK04180 151 AGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLG-AD 229 (293)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhC-CC
Confidence 00000 0000123456778888889997 99999 999999999987 99
Q ss_pred EEEechHHhhCch
Q 025135 198 LVAYGRLFISNPD 210 (257)
Q Consensus 198 ~V~igR~~iadP~ 210 (257)
.|++|+++...++
T Consensus 230 gVaVGSaI~ks~d 242 (293)
T PRK04180 230 GVFVGSGIFKSGD 242 (293)
T ss_pred EEEEcHHhhcCCC
Confidence 9999999994433
No 73
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.57 E-value=1.1e-06 Score=75.98 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+++.| ++.++++........ .......++.+++.+++||+++||+ ++++++++++.|
T Consensus 147 ~~~~~~~~~~~g------~~~ii~~~~~~~g~~---------~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~G 211 (230)
T TIGR00007 147 LEELAKRLEELG------LEGIIYTDISRDGTL---------SGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLG 211 (230)
T ss_pred HHHHHHHHHhCC------CCEEEEEeecCCCCc---------CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCC
Confidence 356889999999 887776643222211 1123567788888899999999999 899999988765
Q ss_pred CCcEEEechHHhhC
Q 025135 195 GADLVAYGRLFISN 208 (257)
Q Consensus 195 ~~D~V~igR~~iad 208 (257)
+|.|++|++++.+
T Consensus 212 -adgv~ig~a~~~~ 224 (230)
T TIGR00007 212 -VYGVIVGKALYEG 224 (230)
T ss_pred -CCEEEEeHHHHcC
Confidence 9999999999876
No 74
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.56 E-value=6.1e-06 Score=75.98 Aligned_cols=102 Identities=17% Similarity=0.039 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCC
Q 025135 77 FLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPG 156 (257)
Q Consensus 77 ~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~ 156 (257)
+.-+.|+.+|+.++. ||.+|-- .+. +.++.+.++| +|+|.+++-.-.+..
T Consensus 208 ~~~~~l~~lr~~~~~-PvivKgv-----------~~~----~dA~~a~~~G------~d~I~vsnhGGr~ld-------- 257 (351)
T cd04737 208 LSPADIEFIAKISGL-PVIVKGI-----------QSP----EDADVAINAG------ADGIWVSNHGGRQLD-------- 257 (351)
T ss_pred CCHHHHHHHHHHhCC-cEEEecC-----------CCH----HHHHHHHHcC------CCEEEEeCCCCccCC--------
Confidence 456889999998864 8999931 122 3567788899 899988542111110
Q ss_pred CchhHHHHHHHHHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 157 TEDEEAQLLRTWRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 157 ~~~~~~~~~~~ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
..+.....+.++++++ ++|||+.||| +..++.++|.-| +|+|++||+++.-.
T Consensus 258 ~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalG-A~~V~iGr~~l~~l 312 (351)
T cd04737 258 GGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASG-ADAVAVGRPVLYGL 312 (351)
T ss_pred CCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHHHH
Confidence 1122335667788887 5899999999 899999999987 99999999999764
No 75
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.54 E-value=2.4e-06 Score=75.25 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHH
Q 025135 114 GLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALA 192 (257)
Q Consensus 114 ~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~ 192 (257)
.+..++++.|++.| ++.+.++.-.-... ........++.+++.+++||+++|++ ++++++++++
T Consensus 155 ~~~~~~~~~l~~~G------~~~iivt~i~~~g~---------~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~ 219 (254)
T TIGR00735 155 LDAVEWAKEVEKLG------AGEILLTSMDKDGT---------KSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFT 219 (254)
T ss_pred CCHHHHHHHHHHcC------CCEEEEeCcCcccC---------CCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 34578899999999 88888865221111 11223467788999999999999999 8999999999
Q ss_pred cCCCcEEEechHHhh
Q 025135 193 EDGADLVAYGRLFIS 207 (257)
Q Consensus 193 ~g~~D~V~igR~~ia 207 (257)
.|.+|+|++|+.+..
T Consensus 220 ~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 220 KGKADAALAASVFHY 234 (254)
T ss_pred cCCcceeeEhHHHhC
Confidence 999999999999874
No 76
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.54 E-value=6.1e-07 Score=78.93 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+++.| ++.++++....... ......+.++.+++.+++||+++||+ +.+++++++..|
T Consensus 32 ~~~~a~~~~~~G------~~~i~i~dl~~~~~---------~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~G 96 (253)
T PRK02083 32 PVELAKRYNEEG------ADELVFLDITASSE---------GRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAG 96 (253)
T ss_pred HHHHHHHHHHcC------CCEEEEEeCCcccc---------cCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcC
Confidence 356888899999 89999886432211 12345678888999999999999999 899999999976
Q ss_pred CCcEEEechHHhhCchHHHHHHcC
Q 025135 195 GADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 195 ~~D~V~igR~~iadP~l~~k~~~g 218 (257)
||.|++|+.++.||++++++.+.
T Consensus 97 -a~~Viigt~~l~~p~~~~ei~~~ 119 (253)
T PRK02083 97 -ADKVSINSAAVANPELISEAADR 119 (253)
T ss_pred -CCEEEEChhHhhCcHHHHHHHHH
Confidence 99999999999999999999875
No 77
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.54 E-value=1.6e-06 Score=74.64 Aligned_cols=133 Identities=23% Similarity=0.260 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDAT 108 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~ 108 (257)
+-++.|.++|.|.|.+...... +.+ + ..+.++++++++.. +-++.+.+.
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~------------~p~--~-------~~~~~~i~~~~~~g-~~~iiv~v~--------- 131 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRP------------RPD--G-------ETLAELIKRIHEEY-NCLLMADIS--------- 131 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC------------CCC--C-------cCHHHHHHHHHHHh-CCeEEEECC---------
Confidence 3567888999999998654310 000 0 14668888888765 335555332
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHH
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELG 187 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a 187 (257)
+.++ +..+.+.| ++|+.+....+..... .........++.+++.+++||+++||+ +++++
T Consensus 132 ---t~~e----a~~a~~~G------~d~i~~~~~g~t~~~~------~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~ 192 (219)
T cd04729 132 ---TLEE----ALNAAKLG------FDIIGTTLSGYTEETA------KTEDPDFELLKELRKALGIPVIAEGRINSPEQA 192 (219)
T ss_pred ---CHHH----HHHHHHcC------CCEEEccCcccccccc------CCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHH
Confidence 2333 35677889 8888653211111100 011122467788998889999999999 89999
Q ss_pred HHHHHcCCCcEEEechHHhhCchHH
Q 025135 188 IQALAEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 188 ~~~l~~g~~D~V~igR~~iadP~l~ 212 (257)
.++++.| +|+|++|++++...+..
T Consensus 193 ~~~l~~G-adgV~vGsal~~~~~~~ 216 (219)
T cd04729 193 AKALELG-ADAVVVGSAITRPEHIT 216 (219)
T ss_pred HHHHHCC-CCEEEEchHHhChHhHh
Confidence 9999998 99999999976655543
No 78
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.52 E-value=3e-06 Score=79.84 Aligned_cols=121 Identities=13% Similarity=0.159 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
+++++.|+...+.||..++|+.|. + .+.-.+.|++||+++|++ .|.+..+. .
T Consensus 198 ~~~~~~a~~~~~~Gf~~~KiKvg~---------------------~----~~~d~~~v~avRe~vG~~~~L~vDaN~--~ 250 (415)
T cd03324 198 EKLRRLCKEALAQGFTHFKLKVGA---------------------D----LEDDIRRCRLAREVIGPDNKLMIDANQ--R 250 (415)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC---------------------C----HHHHHHHHHHHHHhcCCCCeEEEECCC--C
Confidence 445666777778899999997541 1 234568899999999986 46555542 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh---CCcEEEeC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY---QGTFICSG 180 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~~pvi~~G 180 (257)
.+.++++++++.|++.+ +.|++ +|- .+.....++.+++.. ++||.+..
T Consensus 251 -------w~~~~A~~~~~~L~~~~------l~~iE--EP~--------------~~~d~~~~~~L~~~~~~~~iPIa~gE 301 (415)
T cd03324 251 -------WDVPEAIEWVKQLAEFK------PWWIE--EPT--------------SPDDILGHAAIRKALAPLPIGVATGE 301 (415)
T ss_pred -------CCHHHHHHHHHHhhccC------CCEEE--CCC--------------CCCcHHHHHHHHHhcccCCCceecCC
Confidence 35788999999999999 88887 552 122345567788887 58988877
Q ss_pred CC-CHHHHHHHHHcCCCcEEEe
Q 025135 181 GF-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 181 ~i-t~~~a~~~l~~g~~D~V~i 201 (257)
.+ +++++.++++.+.+|+|.+
T Consensus 302 s~~~~~~~~~ll~~~a~dil~~ 323 (415)
T cd03324 302 HCQNRVVFKQLLQAGAIDVVQI 323 (415)
T ss_pred ccCCHHHHHHHHHcCCCCEEEe
Confidence 77 8999999999999999974
No 79
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=98.51 E-value=4.5e-06 Score=78.40 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhc--CCCC----cCCcCCC---CC-C-chhhHhhHHHHHHHHHHHHhCCC-
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQF--LKDG----INDRTDE---YG-G-SIENRCRFLMQLVREVIVAIGAD- 92 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qF--lSp~----~N~R~D~---yG-G-s~enR~r~~~eiv~aiR~~vg~~- 92 (257)
+++.+.|+.+.+.||..+.|+.|..-+ ... .++. .+.-.|. +. + ..+.-.+...+.|++||+++|++
T Consensus 129 ~~~~~~a~~~~~~Gf~~~KiKvg~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~ 207 (404)
T PRK15072 129 DELLDDVARHLELGYKAIRVQCGVPGL-KTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDL 207 (404)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCc-ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCc
Confidence 345566666778999999998753100 000 0000 0000010 00 0 11233567789999999999986
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY 172 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 172 (257)
.|.+-.+. . .+.+++.++++.|++.+ +.|++ +|- .+.....++.+++..
T Consensus 208 ~l~vDaN~--~-------w~~~~A~~~~~~l~~~~------l~~iE--eP~--------------~~~d~~~~~~L~~~~ 256 (404)
T PRK15072 208 HLLHDVHH--R-------LTPIEAARLGKSLEPYR------LFWLE--DPT--------------PAENQEAFRLIRQHT 256 (404)
T ss_pred eEEEECCC--C-------CCHHHHHHHHHhccccC------CcEEE--CCC--------------CccCHHHHHHHHhcC
Confidence 45555442 2 35788999999999998 88887 552 122345667799999
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 025135 173 QGTFICSGGF-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 173 ~~pvi~~G~i-t~~~a~~~l~~g~~D~V~i 201 (257)
++||++...+ ++.++.++++.+.+|+|.+
T Consensus 257 ~iPIa~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 257 TTPLAVGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred CCCEEeCcCccCHHHHHHHHHcCCCCEEec
Confidence 9999887777 8999999999999999985
No 80
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.50 E-value=6.3e-06 Score=75.25 Aligned_cols=136 Identities=21% Similarity=0.190 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCC
Q 025135 26 QYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHL 105 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~ 105 (257)
++.+.+..+.++|+|.|+|+.+||. ...+.+.|+.+|++.+.-+|.+ ..-
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~------------------------~~~~~~~i~~ik~~~p~v~Vi~--G~v---- 143 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGH------------------------SVYVIEMIKFIKKKYPNVDVIA--GNV---- 143 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCC------------------------cHHHHHHHHHHHHHCCCceEEE--CCC----
Confidence 3456666777899999999987731 1346788999998865224433 210
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCC-Cc--ccCCCcCCCCCCCchhHHHHHHHHHH---HhCCcEEEe
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQP-RY--TAYGQTESGRPGTEDEEAQLLRTWRR---SYQGTFICS 179 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~ir~---~~~~pvi~~ 179 (257)
.+. +.++.+.++| +|+|.+..+ .. ...... + ...+ ....+..+.+ ..++|||+.
T Consensus 144 -----~t~----~~A~~l~~aG------aD~I~vg~g~G~~~~t~~~~--g--~g~p-~~~~i~~v~~~~~~~~vpVIA~ 203 (325)
T cd00381 144 -----VTA----EAARDLIDAG------ADGVKVGIGPGSICTTRIVT--G--VGVP-QATAVADVAAAARDYGVPVIAD 203 (325)
T ss_pred -----CCH----HHHHHHHhcC------CCEEEECCCCCcCcccceeC--C--CCCC-HHHHHHHHHHHHhhcCCcEEec
Confidence 123 3567788899 898876421 11 000000 0 0112 2233333433 346999999
Q ss_pred CCC-CHHHHHHHHHcCCCcEEEechHHhhCchHH
Q 025135 180 GGF-TRELGIQALAEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 180 G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~ 212 (257)
||+ ++.++.++|.-| +|.|++||.|+.-.+-+
T Consensus 204 GGI~~~~di~kAla~G-A~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 204 GGIRTSGDIVKALAAG-ADAVMLGSLLAGTDESP 236 (325)
T ss_pred CCCCCHHHHHHHHHcC-CCEEEecchhcccccCC
Confidence 999 899999999987 99999999999866544
No 81
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=8.1e-07 Score=81.84 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=108.7
Q ss_pred CCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHH
Q 025135 38 GFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGL 117 (257)
Q Consensus 38 GfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~ 117 (257)
-..|++||+|| |.-|.-...-|+.+.....-+..|+..+.+.... |+..||+.- ++.++.+
T Consensus 106 DvsgidiN~gC---------pK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~v-pvtckIR~L---------~s~edtL 166 (477)
T KOG2334|consen 106 DVSGIDINMGC---------PKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKV-PVTCKIRLL---------DSKEDTL 166 (477)
T ss_pred ccccccccCCC---------CCccccccCCCchhhcCHHHHHHHHHHHHhcCcc-cceeEEEec---------CCcccHH
Confidence 46789999999 8888888888888877777888888888877632 777777742 2456778
Q ss_pred HHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC-C---HHHHHHHHH
Q 025135 118 AVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF-T---RELGIQALA 192 (257)
Q Consensus 118 ~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i-t---~~~a~~~l~ 192 (257)
.+.+.+...| +..+.+|.++.+.-. .++.....++.+....+ +|||++|+. + -.|.+...+
T Consensus 167 ~lv~ri~~tg------i~ai~vh~rt~d~r~--------~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~ 232 (477)
T KOG2334|consen 167 KLVKRICATG------IAAITVHCRTRDERN--------QEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQE 232 (477)
T ss_pred HHHHHHHhcC------CceEEEEeeccccCC--------CCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHH
Confidence 8999999999 888888866544221 12333455667777777 899999997 5 456777777
Q ss_pred cCCCcEEEechHHhhCchHHH
Q 025135 193 EDGADLVAYGRLFISNPDLVL 213 (257)
Q Consensus 193 ~g~~D~V~igR~~iadP~l~~ 213 (257)
..+.|.||++|....||-.+.
T Consensus 233 ~~~~~~vmiAR~A~~n~SiF~ 253 (477)
T KOG2334|consen 233 KTGADSVMIARAAESNPSIFR 253 (477)
T ss_pred HhccchhhhhHhhhcCCceee
Confidence 788999999999999997764
No 82
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.49 E-value=8.3e-06 Score=68.02 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAI 102 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~ 102 (257)
.++..+.|+.|+++|+|+|.++...+|..++ +.+.+.+.+++|+++++.+ ++.+...+..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~ 124 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEG-------------------DWEEVLEEIAAVVEAADGGLPLKVILETRG 124 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCC-------------------CHHHHHHHHHHHHHHhcCCceEEEEEECCC
Confidence 4667788899999999999998765444321 3567888899999987223 7888777531
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSG 180 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G 180 (257)
. .+.+...++++.+.+.| ++++..+.+... .......++.+++.+ +.||++.|
T Consensus 125 ~-------~~~~~~~~~~~~~~~~g------~~~iK~~~~~~~------------~~~~~~~~~~i~~~~~~~~~v~~~g 179 (201)
T cd00945 125 L-------KTADEIAKAARIAAEAG------ADFIKTSTGFGG------------GGATVEDVKLMKEAVGGRVGVKAAG 179 (201)
T ss_pred C-------CCHHHHHHHHHHHHHhC------CCEEEeCCCCCC------------CCCCHHHHHHHHHhcccCCcEEEEC
Confidence 1 14566677778788888 888876543211 001234556677776 56899999
Q ss_pred CC-CHHHHHHHHHcCCCcEEEec
Q 025135 181 GF-TRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 181 ~i-t~~~a~~~l~~g~~D~V~ig 202 (257)
++ +++.+.+++..| +|.+++|
T Consensus 180 g~~~~~~~~~~~~~G-a~g~~~g 201 (201)
T cd00945 180 GIKTLEDALAAIEAG-ADGIGTS 201 (201)
T ss_pred CCCCHHHHHHHHHhc-cceeecC
Confidence 99 699999999987 9988875
No 83
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.48 E-value=6.1e-06 Score=77.23 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC-C-CcCCC
Q 025135 76 RFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY-G-QTESG 153 (257)
Q Consensus 76 r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~-~-~~~~~ 153 (257)
.-+.++|+.+|+.++..||++|+... ... .++++.++..| +|+|+++...-.+. . ..+..
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~---------~~~---~~~a~~~~~~g------~D~I~VsG~~Ggtg~~~~~~~~ 260 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAG---------HGE---GDIAAGVAAAG------ADFITIDGAEGGTGAAPLTFID 260 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCC---------CCH---HHHHHHHHHcC------CCEEEEeCCCCCCCCCcccccc
Confidence 34789999999998745899999863 112 25677788888 89999875311110 0 00000
Q ss_pred CCCCchhHHHHHHHHHHHh-------CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 154 RPGTEDEEAQLLRTWRRSY-------QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 154 ~~~~~~~~~~~~~~ir~~~-------~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
.. .. +....+..+++.+ ++|||++||| +..++.++|.-| ||+|.+||+++.
T Consensus 261 ~~-g~-pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLG-Ad~V~ig~~~l~ 319 (392)
T cd02808 261 HV-GL-PTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALG-ADAVGIGTAALI 319 (392)
T ss_pred cC-Cc-cHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcC-CCeeeechHHHH
Confidence 00 11 2233444454443 5899999999 999999999998 999999999994
No 84
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.47 E-value=1.8e-06 Score=79.87 Aligned_cols=117 Identities=15% Similarity=0.020 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
++||+++++.+++.+ ...++.++|++||++. |.+|++..
T Consensus 102 a~aa~~~~e~~~~~~-------------------------------~p~l~~~ii~~vr~a~----VtvkiRl~------ 140 (369)
T TIGR01304 102 AAATRLLQELHAAPL-------------------------------KPELLGERIAEVRDSG----VITAVRVS------ 140 (369)
T ss_pred HHHHHHHHHcCCCcc-------------------------------ChHHHHHHHHHHHhcc----eEEEEecC------
Confidence 588888888888752 2568999999999973 45555531
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHH
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TREL 186 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~ 186 (257)
...+.++++.++++| +++|.++.....+... + .... +..+.++++.+++|||+ |++ |.++
T Consensus 141 -----~~~~~e~a~~l~eAG------ad~I~ihgrt~~q~~~--s----g~~~-p~~l~~~i~~~~IPVI~-G~V~t~e~ 201 (369)
T TIGR01304 141 -----PQNAREIAPIVVKAG------ADLLVIQGTLVSAEHV--S----TSGE-PLNLKEFIGELDVPVIA-GGVNDYTT 201 (369)
T ss_pred -----CcCHHHHHHHHHHCC------CCEEEEeccchhhhcc--C----CCCC-HHHHHHHHHHCCCCEEE-eCCCCHHH
Confidence 123567899999999 8988888654332110 0 1122 23455667778999997 666 9999
Q ss_pred HHHHHHcCCCcEEEechHH
Q 025135 187 GIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 187 a~~~l~~g~~D~V~igR~~ 205 (257)
+.++++.| ||+|++||+.
T Consensus 202 A~~~~~aG-aDgV~~G~gg 219 (369)
T TIGR01304 202 ALHLMRTG-AAGVIVGPGG 219 (369)
T ss_pred HHHHHHcC-CCEEEECCCC
Confidence 99999866 9999999755
No 85
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.47 E-value=1.4e-06 Score=76.82 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+++.| ++.+|++.-.-... ....+...++.+++.+++||+++||+ +.+++++++..|
T Consensus 32 p~~~a~~~~~~G------~~~l~v~Dl~~~~~---------~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~G 96 (254)
T TIGR00735 32 PVELAQRYDEEG------ADELVFLDITASSE---------GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAG 96 (254)
T ss_pred HHHHHHHHHHcC------CCEEEEEcCCcccc---------cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC
Confidence 356899999999 89999876321110 23345677888999999999999999 899999999987
Q ss_pred CCcEEEechHHhhCchHHHHHHcC
Q 025135 195 GADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 195 ~~D~V~igR~~iadP~l~~k~~~g 218 (257)
+|.|.+|+.++.||++++++.+.
T Consensus 97 -a~~vivgt~~~~~p~~~~~~~~~ 119 (254)
T TIGR00735 97 -ADKVSINTAAVKNPELIYELADR 119 (254)
T ss_pred -CCEEEEChhHhhChHHHHHHHHH
Confidence 99999999999999999998753
No 86
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.45 E-value=1.1e-05 Score=73.32 Aligned_cols=126 Identities=18% Similarity=0.178 Sum_probs=86.1
Q ss_pred HHHHcC--CCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCC
Q 025135 33 NAIQAG--FDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDS 110 (257)
Q Consensus 33 ~a~~aG--fDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~ 110 (257)
...++| .|.|-|..+||+ .+.+.+.|+.+|+.++...|... +.
T Consensus 101 ~lv~a~~~~d~i~~D~ahg~------------------------s~~~~~~i~~i~~~~p~~~vi~G-nV---------- 145 (321)
T TIGR01306 101 QLAEEALTPEYITIDIAHGH------------------------SNSVINMIKHIKTHLPDSFVIAG-NV---------- 145 (321)
T ss_pred HHHhcCCCCCEEEEeCccCc------------------------hHHHHHHHHHHHHhCCCCEEEEe-cC----------
Confidence 335678 699999999964 35788999999998854223322 11
Q ss_pred CcHHHHHHHHHHHHhcCCccCCceeEEEeeC-CCcc--cCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHH
Q 025135 111 DPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ-PRYT--AYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TREL 186 (257)
Q Consensus 111 ~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~ 186 (257)
.+ .+.++.|.++| +|.|.++. |... ..... +.+...+....+..+++..++|||+.||+ +..+
T Consensus 146 ~t----~e~a~~l~~aG------ad~I~V~~G~G~~~~tr~~~---g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~D 212 (321)
T TIGR01306 146 GT----PEAVRELENAG------ADATKVGIGPGKVCITKIKT---GFGTGGWQLAALRWCAKAARKPIIADGGIRTHGD 212 (321)
T ss_pred CC----HHHHHHHHHcC------cCEEEECCCCCccccceeee---ccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHH
Confidence 12 34577888999 88887762 2111 10000 01112223456677888889999999999 8999
Q ss_pred HHHHHHcCCCcEEEechHHhh
Q 025135 187 GIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 187 a~~~l~~g~~D~V~igR~~ia 207 (257)
+.++|.-| +|+||+||.|..
T Consensus 213 i~KALa~G-Ad~Vmig~~~ag 232 (321)
T TIGR01306 213 IAKSIRFG-ASMVMIGSLFAG 232 (321)
T ss_pred HHHHHHcC-CCEEeechhhcC
Confidence 99999997 999999999875
No 87
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.45 E-value=2.4e-05 Score=71.92 Aligned_cols=152 Identities=11% Similarity=0.004 Sum_probs=93.1
Q ss_pred HHHHHHHHHcCCCEEEecccccch-------hhhcCCCC-cCCcC--CCCCCc-hhhH------hhHHHHHHHHHHHHhC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYL-------IDQFLKDG-INDRT--DEYGGS-IENR------CRFLMQLVREVIVAIG 90 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyL-------l~qFlSp~-~N~R~--D~yGGs-~enR------~r~~~eiv~aiR~~vg 90 (257)
.+..++|+++||+++-||.-.-.+ -+.|-.|. .+.+. +.+.++ .... .....+.|+.+|+.++
T Consensus 134 ~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 213 (344)
T cd02922 134 EELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTK 213 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcC
Confidence 455678899999999998755211 11111111 00011 001111 1111 2245688999998885
Q ss_pred CCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHH
Q 025135 91 ADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRR 170 (257)
Q Consensus 91 ~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 170 (257)
- ||.+|-- .+. +-++.+.+.| +|.|.+++..-.... . ..+ ....+..+++
T Consensus 214 ~-PvivKgv-----------~~~----~dA~~a~~~G------~d~I~vsnhgG~~~d----~---~~~-~~~~L~~i~~ 263 (344)
T cd02922 214 L-PIVLKGV-----------QTV----EDAVLAAEYG------VDGIVLSNHGGRQLD----T---APA-PIEVLLEIRK 263 (344)
T ss_pred C-cEEEEcC-----------CCH----HHHHHHHHcC------CCEEEEECCCcccCC----C---CCC-HHHHHHHHHH
Confidence 3 8888822 122 3456788999 899988753211110 0 111 1233444544
Q ss_pred H---h--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCch
Q 025135 171 S---Y--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPD 210 (257)
Q Consensus 171 ~---~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~ 210 (257)
. + ++|||+.||| +..++.++|.-| +|+|++||+++..+.
T Consensus 264 ~~~~~~~~~~vi~~GGIr~G~Dv~kalaLG-A~aV~iG~~~l~~l~ 308 (344)
T cd02922 264 HCPEVFDKIEVYVDGGVRRGTDVLKALCLG-AKAVGLGRPFLYALS 308 (344)
T ss_pred HHHHhCCCceEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHHHHHh
Confidence 2 2 4899999999 899999999998 999999999999876
No 88
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=98.44 E-value=5.2e-06 Score=76.80 Aligned_cols=115 Identities=12% Similarity=0.113 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
+++.+.|+.+.+.||..++|.. .+.|+++|+++|++ .|.+..+. .
T Consensus 128 ~~~~~~a~~~~~~Gf~~~KiKv--------------------------------~~~v~avre~~G~~~~l~vDaN~--~ 173 (361)
T cd03322 128 PELLEAVERHLAQGYRAIRVQL--------------------------------PKLFEAVREKFGFEFHLLHDVHH--R 173 (361)
T ss_pred HHHHHHHHHHHHcCCCeEeeCH--------------------------------HHHHHHHHhccCCCceEEEECCC--C
Confidence 3455666667788999999743 57799999999986 45554442 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF- 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i- 182 (257)
.+.+++.++++.|++.+ +.|++ +|- .+.....++.+++..++||++...+
T Consensus 174 -------w~~~~A~~~~~~l~~~~------l~~iE--eP~--------------~~~d~~~~~~L~~~~~~pia~gE~~~ 224 (361)
T cd03322 174 -------LTPNQAARFGKDVEPYR------LFWME--DPT--------------PAENQEAFRLIRQHTATPLAVGEVFN 224 (361)
T ss_pred -------CCHHHHHHHHHHhhhcC------CCEEE--CCC--------------CcccHHHHHHHHhcCCCCEEeccCCc
Confidence 35788999999999998 88887 551 2233456677899999998887776
Q ss_pred CHHHHHHHHHcCCCcEEEec
Q 025135 183 TRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~ig 202 (257)
++.++..+++.+.+|+|.+-
T Consensus 225 ~~~~~~~~i~~~a~di~~~d 244 (361)
T cd03322 225 SIWDWQNLIQERLIDYIRTT 244 (361)
T ss_pred CHHHHHHHHHhCCCCEEecC
Confidence 89999999999999998764
No 89
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.42 E-value=9.8e-06 Score=70.11 Aligned_cols=80 Identities=18% Similarity=0.084 Sum_probs=56.7
Q ss_pred HHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 025135 119 VIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGAD 197 (257)
Q Consensus 119 l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D 197 (257)
.++.+.+.| +|++.++......... . ........++++++.+++||++.||+ +++++.++++.| +|
T Consensus 114 ~~~~~~~~g------ad~i~~~~~~~~G~~~-----~-~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~G-ad 180 (236)
T cd04730 114 EARKAEAAG------ADALVAQGAEAGGHRG-----T-FDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALG-AD 180 (236)
T ss_pred HHHHHHHcC------CCEEEEeCcCCCCCCC-----c-cccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-Cc
Confidence 345566788 8888775431111100 0 00123467788888889999999999 679999999876 99
Q ss_pred EEEechHHhhCchH
Q 025135 198 LVAYGRLFISNPDL 211 (257)
Q Consensus 198 ~V~igR~~iadP~l 211 (257)
+|++|++++..++.
T Consensus 181 gV~vgS~l~~~~e~ 194 (236)
T cd04730 181 GVQMGTRFLATEES 194 (236)
T ss_pred EEEEchhhhcCccc
Confidence 99999999977654
No 90
>PRK14017 galactonate dehydratase; Provisional
Probab=98.40 E-value=1.2e-05 Score=74.86 Aligned_cols=131 Identities=15% Similarity=0.216 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
+++++.|+.+++.||..+.|+.+. + ...+++ ......-.+.|+++|+++|++ .|.+.-|. .
T Consensus 126 ~~~~~~a~~~~~~Gf~~~KiKv~~---------~-----~~~~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDaN~--~ 187 (382)
T PRK14017 126 ADVAEAARARVERGFTAVKMNGTE---------E-----LQYIDS--PRKVDAAVARVAAVREAVGPEIGIGVDFHG--R 187 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcC---------C-----cccccc--HHHHHHHHHHHHHHHHHhCCCCeEEEECCC--C
Confidence 445566667778999999998531 0 011111 111344678899999999986 45554442 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF- 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i- 182 (257)
.+.+++.++++.|++.+ +.|++ +|- .+.....++.+++..++||++...+
T Consensus 188 -------w~~~~A~~~~~~l~~~~------~~~iE--eP~--------------~~~d~~~~~~L~~~~~~pIa~dEs~~ 238 (382)
T PRK14017 188 -------VHKPMAKVLAKELEPYR------PMFIE--EPV--------------LPENAEALPEIAAQTSIPIATGERLF 238 (382)
T ss_pred -------CCHHHHHHHHHhhcccC------CCeEE--CCC--------------CcCCHHHHHHHHhcCCCCEEeCCccC
Confidence 35788999999999998 88887 552 1223456678999999999988777
Q ss_pred CHHHHHHHHHcCCCcEEEec
Q 025135 183 TRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~ig 202 (257)
+++++..+++.+.+|+|.+-
T Consensus 239 ~~~~~~~li~~~a~d~v~~d 258 (382)
T PRK14017 239 SRWDFKRVLEAGGVDIIQPD 258 (382)
T ss_pred CHHHHHHHHHcCCCCeEecC
Confidence 89999999999999998753
No 91
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.40 E-value=9.2e-06 Score=75.09 Aligned_cols=100 Identities=22% Similarity=0.154 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCC
Q 025135 77 FLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPG 156 (257)
Q Consensus 77 ~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~ 156 (257)
+.-+-|+.+|+.++- ||.+|= . .. .+.++.+.++| ++.|.++.-.-.+.. .
T Consensus 215 ~~w~~i~~l~~~~~~-PvivKG-v----------~~----~eda~~a~~~G------vd~I~VS~HGGrq~~-------~ 265 (367)
T TIGR02708 215 LSPRDIEEIAGYSGL-PVYVKG-P----------QC----PEDADRALKAG------ASGIWVTNHGGRQLD-------G 265 (367)
T ss_pred CCHHHHHHHHHhcCC-CEEEeC-C----------CC----HHHHHHHHHcC------cCEEEECCcCccCCC-------C
Confidence 344778999988764 888881 1 12 34577788999 888766542211111 1
Q ss_pred CchhHHHHHHHHHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 157 TEDEEAQLLRTWRRSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 157 ~~~~~~~~~~~ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
... .+..+.+++++++ +|||++||| +..++.++|.-| ||+|++||+++.
T Consensus 266 ~~a-~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalG-Ad~V~igR~~l~ 317 (367)
T TIGR02708 266 GPA-AFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASG-ADLVALGRPVIY 317 (367)
T ss_pred CCc-HHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 122 2456777888774 899999999 899999999976 999999999874
No 92
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.36 E-value=1.7e-05 Score=71.87 Aligned_cols=76 Identities=17% Similarity=0.099 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCC
Q 025135 118 AVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGA 196 (257)
Q Consensus 118 ~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~ 196 (257)
+.++.++++| +|+|.++...... +........++..+++.+++|||+.||| +++++.+++..| +
T Consensus 120 ~~a~~a~~~G------aD~Ivv~g~eagG--------h~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~G-A 184 (307)
T TIGR03151 120 ALAKRMEKAG------ADAVIAEGMESGG--------HIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALG-A 184 (307)
T ss_pred HHHHHHHHcC------CCEEEEECcccCC--------CCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-C
Confidence 4567888999 8988876531111 1112223567788899999999999999 899999999976 9
Q ss_pred cEEEechHHhhC
Q 025135 197 DLVAYGRLFISN 208 (257)
Q Consensus 197 D~V~igR~~iad 208 (257)
|.|++|+.|+.-
T Consensus 185 ~gV~iGt~f~~t 196 (307)
T TIGR03151 185 EAVQMGTRFLCA 196 (307)
T ss_pred CEeecchHHhcc
Confidence 999999999953
No 93
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.36 E-value=1.9e-05 Score=75.21 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
.+-|+.+.++|+|.|+|.++||. ...+.+.|+.||+..++-+|.+.--
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~------------------------~~~~~~~i~~i~~~~~~~~vi~G~v-------- 273 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGH------------------------SIYVIDSIKEIKKTYPDLDIIAGNV-------- 273 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc------------------------HhHHHHHHHHHHHhCCCCCEEEEeC--------
Confidence 34555677899999999999831 1357888999999876446655211
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeC-CCcccCCCcCCCCCCCchhHHHHHH---HHHHHhCCcEEEeCCC-
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ-PRYTAYGQTESGRPGTEDEEAQLLR---TWRRSYQGTFICSGGF- 182 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~ir~~~~~pvi~~G~i- 182 (257)
.+.+. ++.|.++| +|+|.+.- |...-......+ . +.+ ....+. .+.+..++|||+.||+
T Consensus 274 ---~t~~~----a~~l~~aG------ad~i~vg~g~G~~~~t~~~~~-~-g~p-~~~~i~~~~~~~~~~~vpviadGGi~ 337 (450)
T TIGR01302 274 ---ATAEQ----AKALIDAG------ADGLRVGIGPGSICTTRIVAG-V-GVP-QITAVYDVAEYAAQSGIPVIADGGIR 337 (450)
T ss_pred ---CCHHH----HHHHHHhC------CCEEEECCCCCcCCccceecC-C-Ccc-HHHHHHHHHHHHhhcCCeEEEeCCCC
Confidence 23443 56677899 88887642 221000000000 0 111 122333 3344468999999999
Q ss_pred CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH--cCCCC
Q 025135 183 TRELGIQALAEDGADLVAYGRLFISNPDLVLRFK--LNAPL 221 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~--~g~~~ 221 (257)
++.++.++|+-| ||.||+|+.|..-.+-|-++. +|+.+
T Consensus 338 ~~~di~kAla~G-A~~V~~G~~~a~~~e~pg~~~~~~g~~~ 377 (450)
T TIGR01302 338 YSGDIVKALAAG-ADAVMLGSLLAGTTESPGEYEIINGRRY 377 (450)
T ss_pred CHHHHHHHHHcC-CCEEEECchhhcCCcCCCceEEECCEEE
Confidence 999999999998 999999999988776665543 45443
No 94
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.34 E-value=1.5e-05 Score=73.50 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCC
Q 025135 27 YRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHL 105 (257)
Q Consensus 27 f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~ 105 (257)
..+.++.+.+.||..|+|..|.. .. ..| + ..-.+.-.+.|+++|+++|++ .|.+-.+. .
T Consensus 127 ~~~~~~~~~~~Gf~~~KiKvg~~---------~~--~~~---~--~~~~~~D~~~i~avr~~~g~~~~l~vDaN~--~-- 186 (352)
T cd03325 127 VAEAARARREAGFTAVKMNATEE---------LQ--WID---T--SKKVDAAVERVAALREAVGPDIDIGVDFHG--R-- 186 (352)
T ss_pred HHHHHHHHHHcCCCEEEecCCCC---------cc--cCC---C--HHHHHHHHHHHHHHHHhhCCCCEEEEECCC--C--
Confidence 34455556689999999987631 00 011 0 112345688999999999986 45554442 1
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CH
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TR 184 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~ 184 (257)
.+.++++++++.|++.+ +.|++ +|- .+.....++.+++..++||.+...+ ++
T Consensus 187 -----~~~~~A~~~~~~l~~~~------i~~iE--eP~--------------~~~d~~~~~~L~~~~~~pia~dEs~~~~ 239 (352)
T cd03325 187 -----VSKPMAKDLAKELEPYR------LLFIE--EPV--------------LPENVEALAEIAARTTIPIATGERLFSR 239 (352)
T ss_pred -----CCHHHHHHHHHhccccC------CcEEE--CCC--------------CccCHHHHHHHHHhCCCCEEecccccCH
Confidence 35788999999999998 88887 552 1223456677899999999887777 89
Q ss_pred HHHHHHHHcCCCcEEEec
Q 025135 185 ELGIQALAEDGADLVAYG 202 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~ig 202 (257)
+++..+++.+.+|+|.+-
T Consensus 240 ~~~~~~~~~~~~d~v~~d 257 (352)
T cd03325 240 WDFKELLEDGAVDIIQPD 257 (352)
T ss_pred HHHHHHHHhCCCCEEecC
Confidence 999999999999998764
No 95
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.32 E-value=4e-05 Score=67.17 Aligned_cols=162 Identities=16% Similarity=0.156 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHH-----HHHHHHHHHhCCCeE--EE
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLM-----QLVREVIVAIGADRV--GV 96 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~-----eiv~aiR~~vg~~~v--~v 96 (257)
++.+.+.++...++ +|.|||+..| +|-..| |..+++....++ ++++++|+.+.. |+ .+
T Consensus 17 ~~~~~~~~~~l~~~-ad~iElgip~-----------sdp~ad--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~-Pl~lM~ 81 (244)
T PRK13125 17 VESFKEFIIGLVEL-VDILELGIPP-----------KYPKYD--GPVIRKSHRKVKGLDIWPLLEEVRKDVSV-PIILMT 81 (244)
T ss_pred HHHHHHHHHHHHhh-CCEEEECCCC-----------CCCCCC--CHHHHHHHHHHHHcCcHHHHHHHhccCCC-CEEEEE
Confidence 45666777777777 9999999866 333334 556677666666 899999987643 53 46
Q ss_pred EEccCC-C-------CCCCC------C---CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc----------cCCC
Q 025135 97 RMSPAI-D-------HLDAT------D---SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT----------AYGQ 149 (257)
Q Consensus 97 rls~~~-~-------~~~~~------~---~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~----------~~~~ 149 (257)
++++.. + +...+ . .+..++..++.+.+.+.| +..+-+..|... ....
T Consensus 82 y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~G------l~~~~~v~p~T~~e~l~~~~~~~~~~ 155 (244)
T PRK13125 82 YLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKG------LKPVFFTSPKFPDLLIHRLSKLSPLF 155 (244)
T ss_pred ecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcC------CCEEEEECCCCCHHHHHHHHHhCCCE
Confidence 666521 0 00000 1 011345566777777777 444333233110 0000
Q ss_pred ---cCCCCCC--CchhHHHHHHHHHHHh-CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 150 ---TESGRPG--TEDEEAQLLRTWRRSY-QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 150 ---~~~~~~~--~~~~~~~~~~~ir~~~-~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
+..++.+ ........++.+|+.. +.||++.||+ +++++.++++.| +|.|.+|.+++.
T Consensus 156 l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~g-aD~vvvGSai~~ 219 (244)
T PRK13125 156 IYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAG-ADGVVVGTAFIE 219 (244)
T ss_pred EEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence 0001111 1122234566777776 4788888999 999999999887 999999999975
No 96
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=98.32 E-value=1.5e-05 Score=74.55 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=83.8
Q ss_pred HHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCc
Q 025135 34 AIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDP 112 (257)
Q Consensus 34 a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~ 112 (257)
+++.||.++.|..++| |.. | ..-.+.-.+.|++||+++|++ .|.+-.+. . .+
T Consensus 168 a~~~Gf~~~Kik~~~g--------~~~-------g---~~~~~~di~~v~avReavG~d~~l~vDaN~--~-------~~ 220 (394)
T PRK15440 168 AKEMGFIGGKMPLHHG--------PAD-------G---DAGLRKNAAMVADMREKVGDDFWLMLDCWM--S-------LD 220 (394)
T ss_pred HHhCCCCEEEEcCCcC--------ccc-------c---hHHHHHHHHHHHHHHHhhCCCCeEEEECCC--C-------CC
Confidence 3468999999876432 100 1 011345678999999999987 56665553 1 35
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCc--EEEeCCC-CHHHHHH
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGT--FICSGGF-TRELGIQ 189 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~p--vi~~G~i-t~~~a~~ 189 (257)
.++++++++.|++.+ +.|++ +|- .+.....++.+++.++.| +.+.... ++.++.+
T Consensus 221 ~~~Ai~~~~~le~~~------l~wiE--EPl--------------~~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~ 278 (394)
T PRK15440 221 VNYATKLAHACAPYG------LKWIE--ECL--------------PPDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRT 278 (394)
T ss_pred HHHHHHHHHHhhhcC------Cccee--CCC--------------CcccHHHHHHHHHhCCCCCceecCCCccCHHHHHH
Confidence 788999999999999 88887 551 223345667789987755 3333345 8999999
Q ss_pred HHHcCCCcEEEe
Q 025135 190 ALAEDGADLVAY 201 (257)
Q Consensus 190 ~l~~g~~D~V~i 201 (257)
+|+.+.+|+|.+
T Consensus 279 li~~~a~Divq~ 290 (394)
T PRK15440 279 LLEMGCIDIIQP 290 (394)
T ss_pred HHHcCCCCEEeC
Confidence 999999999865
No 97
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.32 E-value=3.1e-05 Score=65.72 Aligned_cols=105 Identities=19% Similarity=0.113 Sum_probs=68.3
Q ss_pred HHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhH
Q 025135 82 VREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEE 161 (257)
Q Consensus 82 v~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~ 161 (257)
++.+|+..+...|++..+ +.++ ++.+.+.| +||+.+. +.+..... .+ ..+..
T Consensus 86 ~~~~r~~~~~~~ig~s~~------------s~e~----a~~a~~~G------adyi~~g-~v~~t~~k--~~---~~~~g 137 (201)
T PRK07695 86 VRSVREKFPYLHVGYSVH------------SLEE----AIQAEKNG------ADYVVYG-HVFPTDCK--KG---VPARG 137 (201)
T ss_pred HHHHHHhCCCCEEEEeCC------------CHHH----HHHHHHcC------CCEEEEC-CCCCCCCC--CC---CCCCC
Confidence 345566664325776432 2333 45677889 8998643 22221110 00 11122
Q ss_pred HHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 162 AQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 162 ~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
...++.+++.+++||++.||++++++.++++.| +|+|++++++...++....+
T Consensus 138 ~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~G-a~gvav~s~i~~~~~p~~~~ 190 (201)
T PRK07695 138 LEELSDIARALSIPVIAIGGITPENTRDVLAAG-VSGIAVMSGIFSSANPYSKA 190 (201)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcC-CCEEEEEHHHhcCCCHHHHH
Confidence 456677888889999999999999999999987 99999999999755544433
No 98
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=98.32 E-value=2.5e-05 Score=71.13 Aligned_cols=122 Identities=9% Similarity=0.080 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
++.++.|++..+.||..+.|..|. .+ ..--.+.|++||+++|++ .|.+..+. .
T Consensus 120 ~~~~~~a~~~~~~G~~~~KvKvG~--------------------~~----~~~d~~~v~air~~~g~~~~l~vDaN~--~ 173 (320)
T PRK02714 120 EAALQQWQTLWQQGYRTFKWKIGV--------------------DP----LEQELKIFEQLLERLPAGAKLRLDANG--G 173 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECC--------------------CC----hHHHHHHHHHHHHhcCCCCEEEEECCC--C
Confidence 345566677778899999997653 01 123467899999999875 34444332 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHh---cCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNK---LQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG 180 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~---~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G 180 (257)
.+.+++.++++.|++ .+ +.|++ +|- .+.....+..+++..++||++..
T Consensus 174 -------w~~~~A~~~~~~l~~l~~~~------i~~iE--qP~--------------~~~~~~~~~~l~~~~~~Pia~DE 224 (320)
T PRK02714 174 -------LSLEEAKRWLQLCDRRLSGK------IEFIE--QPL--------------PPDQFDEMLQLSQDYQTPIALDE 224 (320)
T ss_pred -------CCHHHHHHHHHHHhhccCCC------ccEEE--CCC--------------CcccHHHHHHHHHhCCCCEEECC
Confidence 357889999999988 46 78887 552 12234566779999999999988
Q ss_pred CC-CHHHHHHHHHcCCCcEEEe
Q 025135 181 GF-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 181 ~i-t~~~a~~~l~~g~~D~V~i 201 (257)
.+ ++.++..+++.+.+|+|.+
T Consensus 225 s~~~~~d~~~~~~~~a~d~v~i 246 (320)
T PRK02714 225 SVANLAQLQQCYQQGWRGIFVI 246 (320)
T ss_pred ccCCHHHHHHHHHcCCCCEEEE
Confidence 87 8999999999999998765
No 99
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.30 E-value=5.2e-05 Score=64.30 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=41.9
Q ss_pred HHHHHHHHHhC-----CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 163 QLLRTWRRSYQ-----GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 163 ~~~~~ir~~~~-----~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
..++++++..+ .|+++.||++++.+.++++.| +|.|.+|++++..+|....++
T Consensus 150 ~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~g-ad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 150 EKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAG-ADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHHH
Confidence 34455555543 688899999999999999877 999999999998888666554
No 100
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=98.30 E-value=2.1e-05 Score=72.91 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=83.3
Q ss_pred HHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHH
Q 025135 35 IQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLG 114 (257)
Q Consensus 35 ~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~ 114 (257)
.+.||..+.|+.|. + + .+--.+.|+++|+++|++ +.+++-.+.. .+.+
T Consensus 154 ~~~Gf~~~KiKvg~--------------~------~----~~~d~~~v~~~re~~g~~-~~l~~DaN~~-------~~~~ 201 (368)
T TIGR02534 154 EEKRHRSFKLKIGA--------------R------D----PADDVAHVVAIAKALGDR-ASVRVDVNAA-------WDER 201 (368)
T ss_pred HhcCcceEEEEeCC--------------C------C----cHHHHHHHHHHHHhcCCC-cEEEEECCCC-------CCHH
Confidence 35799999998652 0 1 223468899999999985 3333333222 3578
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHc
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAE 193 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~ 193 (257)
++.++++.|++.+ +.|++ +|. .+.....++.+++..++||++...+ +++++.++++.
T Consensus 202 ~A~~~~~~l~~~~------~~~iE--eP~--------------~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~ 259 (368)
T TIGR02534 202 TALHYLPQLADAG------VELIE--QPT--------------PAENREALARLTRRFNVPIMADESVTGPADALAIAKA 259 (368)
T ss_pred HHHHHHHHHHhcC------hhheE--CCC--------------CcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh
Confidence 8999999999998 88887 552 2223455567899999999987777 89999999999
Q ss_pred CCCcEEEe
Q 025135 194 DGADLVAY 201 (257)
Q Consensus 194 g~~D~V~i 201 (257)
+.+|+|.+
T Consensus 260 ~~~d~~~~ 267 (368)
T TIGR02534 260 SAADVFAL 267 (368)
T ss_pred CCCCEEEE
Confidence 99999886
No 101
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.29 E-value=2.4e-05 Score=75.32 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
.+-|+.+.++|.|.|+|..+||. ..+..+.|+.||+..+.-+|++. +
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~------------------------s~~~~~~i~~ik~~~~~~~v~aG-~-------- 289 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGN------------------------SIYQIDMIKKLKSNYPHVDIIAG-N-------- 289 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCC------------------------chHHHHHHHHHHhhCCCceEEEC-C--------
Confidence 56667778999999999998731 23567899999998764355541 1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEee-CCCc--ccCCCcCCCCCCCchhH--HHHHHHHHHHhCCcEEEeCCC
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVT-QPRY--TAYGQTESGRPGTEDEE--AQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~-~~~~--~~~~~~~~~~~~~~~~~--~~~~~~ir~~~~~pvi~~G~i 182 (257)
-.+.+ -++.+.++| +|+|.+. .+.. ...... .. +.+.. ...+..+.+..++|||+.||+
T Consensus 290 --V~t~~----~a~~~~~aG------ad~I~vg~g~Gs~~~t~~~~---~~-g~p~~~ai~~~~~~~~~~~v~vIadGGi 353 (495)
T PTZ00314 290 --VVTAD----QAKNLIDAG------ADGLRIGMGSGSICITQEVC---AV-GRPQASAVYHVARYARERGVPCIADGGI 353 (495)
T ss_pred --cCCHH----HHHHHHHcC------CCEEEECCcCCcccccchhc---cC-CCChHHHHHHHHHHHhhcCCeEEecCCC
Confidence 02333 355677899 8888753 1211 110000 00 11211 122334455568999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCchHHH
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNPDLVL 213 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP~l~~ 213 (257)
++.++.++|.-| +|+|++|+.|..--+.+.
T Consensus 354 ~~~~di~kAla~G-A~~Vm~G~~~a~~~e~~~ 384 (495)
T PTZ00314 354 KNSGDICKALALG-ADCVMLGSLLAGTEEAPG 384 (495)
T ss_pred CCHHHHHHHHHcC-CCEEEECchhccccccCC
Confidence 999999999998 999999999876444443
No 102
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=98.27 E-value=2.7e-05 Score=72.07 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=85.6
Q ss_pred HHHHHHHHcC-CCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCCC
Q 025135 29 QAALNAIQAG-FDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHLD 106 (257)
Q Consensus 29 ~AA~~a~~aG-fDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~~ 106 (257)
+.|+.+.+.| |..++|+.|. .+ .+--.+.|++||+++|++ .|.+-.+. .
T Consensus 148 ~~~~~~~~~G~f~~~KiKvg~--------------------~~----~~~d~~~v~avr~~~g~~~~l~iDaN~--~--- 198 (365)
T cd03318 148 AEAEEMLEAGRHRRFKLKMGA--------------------RP----PADDLAHVEAIAKALGDRASVRVDVNQ--A--- 198 (365)
T ss_pred HHHHHHHhCCCceEEEEEeCC--------------------CC----hHHHHHHHHHHHHHcCCCcEEEEECCC--C---
Confidence 4444556788 9999998652 01 222457899999999975 34444332 2
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHH
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRE 185 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~ 185 (257)
.+.++++++++.|++.+ +.|++ +|- .......++.+++..++||++...+ +++
T Consensus 199 ----~~~~~A~~~~~~l~~~~------~~~iE--eP~--------------~~~~~~~~~~l~~~~~~pia~dE~~~~~~ 252 (365)
T cd03318 199 ----WDESTAIRALPRLEAAG------VELIE--QPV--------------PRENLDGLARLRSRNRVPIMADESVSGPA 252 (365)
T ss_pred ----CCHHHHHHHHHHHHhcC------cceee--CCC--------------CcccHHHHHHHHhhcCCCEEcCcccCCHH
Confidence 35788999999999998 88887 552 1222355677888889998887776 899
Q ss_pred HHHHHHHcCCCcEEEe
Q 025135 186 LGIQALAEDGADLVAY 201 (257)
Q Consensus 186 ~a~~~l~~g~~D~V~i 201 (257)
++.++++.+.+|+|.+
T Consensus 253 ~~~~~i~~~~~d~~~~ 268 (365)
T cd03318 253 DAFELARRGAADVFSL 268 (365)
T ss_pred HHHHHHHhCCCCeEEE
Confidence 9999999999999876
No 103
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.26 E-value=2.3e-05 Score=69.36 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHLD 106 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~~ 106 (257)
.+.++.+.+.||..+.|..|. . + ..--.+.|++||+++|++ .|.+..+. .
T Consensus 87 ~~~~~~~~~~Gf~~~KiKvg~---------------~-----~----~~~d~~~v~~vr~~~g~~~~l~vDaN~--~--- 137 (263)
T cd03320 87 LGEAKAAYGGGYRTVKLKVGA---------------T-----S----FEEDLARLRALREALPADAKLRLDANG--G--- 137 (263)
T ss_pred HHHHHHHHhCCCCEEEEEECC---------------C-----C----hHHHHHHHHHHHHHcCCCCeEEEeCCC--C---
Confidence 345666778899999998652 0 1 123467899999999975 34444332 2
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHH
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRE 185 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~ 185 (257)
.+.+++..+++.|++.+ +.|++ +|- .+.....++.++ .++||.+...+ +++
T Consensus 138 ----w~~~~A~~~~~~l~~~~------i~~iE--qP~--------------~~~d~~~~~~l~--~~~PIa~dEs~~~~~ 189 (263)
T cd03320 138 ----WSLEEALAFLEALAAGR------IEYIE--QPL--------------PPDDLAELRRLA--AGVPIALDESLRRLD 189 (263)
T ss_pred ----CCHHHHHHHHHhhcccC------CceEE--CCC--------------ChHHHHHHHHhh--cCCCeeeCCcccccc
Confidence 35788999999999998 88887 551 222334445555 67899998877 899
Q ss_pred HHHHHHHcCCCcEEEec
Q 025135 186 LGIQALAEDGADLVAYG 202 (257)
Q Consensus 186 ~a~~~l~~g~~D~V~ig 202 (257)
++.++++.+.+|+|.+=
T Consensus 190 ~~~~~~~~~~~d~v~~k 206 (263)
T cd03320 190 DPLALAAAGALGALVLK 206 (263)
T ss_pred CHHHHHhcCCCCEEEEC
Confidence 99999999999999764
No 104
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.24 E-value=5.3e-05 Score=70.86 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCC
Q 025135 26 QYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHL 105 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~ 105 (257)
+..+-+..+.++|.|.|-|.++||+ .+.+.++|+.||+.+++-+|.+.--
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g~------------------------~~~~~~~v~~ik~~~p~~~vi~g~V------ 202 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHGH------------------------STRIIELVKKIKTKYPNLDLIAGNI------ 202 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCC------------------------ChhHHHHHHHHHhhCCCCcEEEEec------
Confidence 3445666677899999999999832 1347789999999986544443221
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC-CCcCCCCCCCchh--HHHHHHHHHHHhCCcEEEeCCC
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY-GQTESGRPGTEDE--EAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~G~i 182 (257)
.+.+ -++.|.++| +|+|-+.-...... .....+ . +.+. ....+..+.+..++|||+-|||
T Consensus 203 -----~T~e----~a~~l~~aG------aD~I~vG~g~Gs~c~tr~~~g-~-g~p~ltai~~v~~~~~~~~vpVIAdGGI 265 (404)
T PRK06843 203 -----VTKE----AALDLISVG------ADCLKVGIGPGSICTTRIVAG-V-GVPQITAICDVYEVCKNTNICIIADGGI 265 (404)
T ss_pred -----CCHH----HHHHHHHcC------CCEEEECCCCCcCCcceeecC-C-CCChHHHHHHHHHHHhhcCCeEEEeCCC
Confidence 1333 456677889 88876531110000 000000 0 1121 1223344555568999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCchHH
Q 025135 183 -TRELGIQALAEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 183 -t~~~a~~~l~~g~~D~V~igR~~iadP~l~ 212 (257)
++.++.++|.-| +|.|++|+.|..-.+-|
T Consensus 266 ~~~~Di~KALalG-A~aVmvGs~~agt~Esp 295 (404)
T PRK06843 266 RFSGDVVKAIAAG-ADSVMIGNLFAGTKESP 295 (404)
T ss_pred CCHHHHHHHHHcC-CCEEEEcceeeeeecCC
Confidence 999999999998 99999999999854433
No 105
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.23 E-value=0.00011 Score=62.78 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 025135 162 AQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 162 ~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~ig 202 (257)
.+.++.+|+.++.|++.+||| ++++++++++.| +|.|.+|
T Consensus 165 ~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVVG 205 (205)
T TIGR01769 165 PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVTG 205 (205)
T ss_pred HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEeC
Confidence 567888999999999999999 899999999888 9999886
No 106
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=98.22 E-value=3.3e-05 Score=72.36 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=84.7
Q ss_pred HHHHHHHHHH-HcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCC
Q 025135 26 QYRQAALNAI-QAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDH 104 (257)
Q Consensus 26 ~f~~AA~~a~-~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~ 104 (257)
++++.|+.+. +.||..+.|+.|.. + .+.-.+.|+++|+++++..|.+..+. .
T Consensus 171 ~~~~~a~~~~~~~Gf~~~KiKvG~~--------------------~----~~~di~~v~avRea~~~~~l~vDaN~--~- 223 (395)
T cd03323 171 GVVRLARAAIDRYGFKSFKLKGGVL--------------------P----GEEEIEAVKALAEAFPGARLRLDPNG--A- 223 (395)
T ss_pred HHHHHHHHHHHhcCCcEEEEecCCC--------------------C----HHHHHHHHHHHHHhCCCCcEEEeCCC--C-
Confidence 3444555555 46999999986530 0 23346889999999952134444432 2
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T 183 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t 183 (257)
.+.++++++++.|++ + +.|++ +|- . ....++.+++..++||.+...+ +
T Consensus 224 ------w~~~~A~~~~~~l~~-~------l~~iE--eP~--------------~--d~~~~~~L~~~~~~PIa~dEs~~~ 272 (395)
T cd03323 224 ------WSLETAIRLAKELEG-V------LAYLE--DPC--------------G--GREGMAEFRRATGLPLATNMIVTD 272 (395)
T ss_pred ------cCHHHHHHHHHhcCc-C------CCEEE--CCC--------------C--CHHHHHHHHHhcCCCEEcCCcccC
Confidence 357889999999999 8 88887 542 1 2355677899999999887777 8
Q ss_pred HHHHHHHHHcCCCcEEEe
Q 025135 184 RELGIQALAEDGADLVAY 201 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~i 201 (257)
.+++.++++.+.+|++.+
T Consensus 273 ~~~~~~~i~~~avdil~~ 290 (395)
T cd03323 273 FRQLGHAIQLNAVDIPLA 290 (395)
T ss_pred HHHHHHHHHcCCCcEEee
Confidence 999999999999999854
No 107
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.21 E-value=3.1e-05 Score=68.06 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+++.| ++.+.++.-...... ....+..++.+++.+++|||++||+ +++++.++++..
T Consensus 155 ~~~~~~~~~~~g------~~~ii~~~i~~~g~~---------~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~ 219 (253)
T PRK02083 155 AVEWAKEVEELG------AGEILLTSMDRDGTK---------NGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEG 219 (253)
T ss_pred HHHHHHHHHHcC------CCEEEEcCCcCCCCC---------CCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhC
Confidence 456788899999 777766431111110 1123567788888889999999999 899999999875
Q ss_pred CCcEEEechHHhhC
Q 025135 195 GADLVAYGRLFISN 208 (257)
Q Consensus 195 ~~D~V~igR~~iad 208 (257)
+||.|++|+.+...
T Consensus 220 G~~gvivg~al~~~ 233 (253)
T PRK02083 220 GADAALAASIFHFG 233 (253)
T ss_pred CccEEeEhHHHHcC
Confidence 59999999999864
No 108
>PLN02535 glycolate oxidase
Probab=98.20 E-value=4.6e-05 Score=70.44 Aligned_cols=103 Identities=12% Similarity=0.000 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCC
Q 025135 77 FLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPG 156 (257)
Q Consensus 77 ~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~ 156 (257)
+.-+-|+.+|+.++ -||.+|=-. +.++ ++.+.++| +|+|.+++..-.+..
T Consensus 210 ~tW~~i~~lr~~~~-~PvivKgV~-----------~~~d----A~~a~~~G------vD~I~vsn~GGr~~d-------- 259 (364)
T PLN02535 210 LSWKDIEWLRSITN-LPILIKGVL-----------TRED----AIKAVEVG------VAGIIVSNHGARQLD-------- 259 (364)
T ss_pred CCHHHHHHHHhccC-CCEEEecCC-----------CHHH----HHHHHhcC------CCEEEEeCCCcCCCC--------
Confidence 44577899998764 388888221 1232 56788899 899988753211111
Q ss_pred CchhHHHHHHHHHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCch
Q 025135 157 TEDEEAQLLRTWRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPD 210 (257)
Q Consensus 157 ~~~~~~~~~~~ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~ 210 (257)
..+.....+..+++.+ .+|||+.||| +..++.++|.-| +|+|++||+++..+.
T Consensus 260 ~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalG-A~aV~vGr~~l~~l~ 315 (364)
T PLN02535 260 YSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALG-AQAVLVGRPVIYGLA 315 (364)
T ss_pred CChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcC-CCEEEECHHHHhhhh
Confidence 1223346667777776 5899999999 899999999998 999999999997654
No 109
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.16 E-value=1.4e-05 Score=69.20 Aligned_cols=88 Identities=17% Similarity=0.102 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHc
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAE 193 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~ 193 (257)
+..++++.+++.| ++.++++.-..... ....+...++.+++.+++||+++||+ +.++++++++.
T Consensus 31 dp~~~a~~~~~~g------~~~i~i~dl~~~~~---------~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~ 95 (232)
T TIGR03572 31 DPVNAARIYNAKG------ADELIVLDIDASKR---------GREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSL 95 (232)
T ss_pred CHHHHHHHHHHcC------CCEEEEEeCCCccc---------CCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHc
Confidence 3467899999999 88888875322111 12234566788888899999999999 89999998887
Q ss_pred CCCcEEEechHHhhCchHHHHHHcC
Q 025135 194 DGADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 194 g~~D~V~igR~~iadP~l~~k~~~g 218 (257)
| +|.|.+|+.++.||++++++.+.
T Consensus 96 G-~~~vilg~~~l~~~~~~~~~~~~ 119 (232)
T TIGR03572 96 G-ADKVSINTAALENPDLIEEAARR 119 (232)
T ss_pred C-CCEEEEChhHhcCHHHHHHHHHH
Confidence 6 99999999999999999998863
No 110
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.16 E-value=9.2e-05 Score=68.17 Aligned_cols=118 Identities=9% Similarity=0.096 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDH 104 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~ 104 (257)
+++.+.|+.+++.||..+.|+.+. ..-.+.|++||+++|+-.|.+-.+ ..|
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv~~---------------------------~~d~~~l~~vr~~~g~~~l~lDaN--~~~ 189 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKIKP---------------------------GWDVEPLKAVRERFPDIPLMADAN--SAY 189 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCh---------------------------HHHHHHHHHHHHHCCCCeEEEECC--CCC
Confidence 456667777788999999997531 023577999999998213444333 222
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T 183 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t 183 (257)
+.+++. +++.|++.+ +.|++ +|- .+.....++.+++..++||++...+ +
T Consensus 190 -------~~~~a~-~~~~l~~~~------i~~iE--eP~--------------~~~d~~~~~~l~~~~~~pia~dEs~~~ 239 (354)
T cd03317 190 -------TLADIP-LLKRLDEYG------LLMIE--QPL--------------AADDLIDHAELQKLLKTPICLDESIQS 239 (354)
T ss_pred -------CHHHHH-HHHHhhcCC------ccEEE--CCC--------------ChhHHHHHHHHHhhcCCCEEeCCccCC
Confidence 345564 788999988 88887 552 2233455677899999999887777 8
Q ss_pred HHHHHHHHHcCCCcEEEe
Q 025135 184 RELGIQALAEDGADLVAY 201 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~i 201 (257)
++++..+++.+.+|+|.+
T Consensus 240 ~~~~~~~~~~~~~d~~~i 257 (354)
T cd03317 240 AEDARKAIELGACKIINI 257 (354)
T ss_pred HHHHHHHHHcCCCCEEEe
Confidence 999999999999999876
No 111
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.15 E-value=9e-05 Score=71.50 Aligned_cols=148 Identities=14% Similarity=0.153 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE-EccCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR-MSPAIDHLD 106 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr-ls~~~~~~~ 106 (257)
.+-|+.+.+||.|.|-|.++||. .....+.|+.||+..+.-.|... +.
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~------------------------~~~~~~~i~~ik~~~p~~~vi~g~v~------- 298 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGD------------------------SIYQLEMIKYIKKTYPELDVIGGNVV------- 298 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC------------------------cHHHHHHHHHHHHhCCCCcEEEecCC-------
Confidence 35566677899999999998842 23467889999998864344322 22
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeC--CCcc-cCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ--PRYT-AYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF- 182 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i- 182 (257)
+.++ ++.+.++| +|.|-+.. +... .......+. +.......+..+.+..++|||+-|||
T Consensus 299 -----t~e~----a~~a~~aG------aD~i~vg~g~G~~~~t~~~~~~g~--~~~~~i~~~~~~~~~~~vpVIadGGI~ 361 (505)
T PLN02274 299 -----TMYQ----AQNLIQAG------VDGLRVGMGSGSICTTQEVCAVGR--GQATAVYKVASIAAQHGVPVIADGGIS 361 (505)
T ss_pred -----CHHH----HHHHHHcC------cCEEEECCCCCccccCccccccCC--CcccHHHHHHHHHHhcCCeEEEeCCCC
Confidence 3443 56677899 88886532 1111 110000011 11122344666777788999999999
Q ss_pred CHHHHHHHHHcCCCcEEEechHHhhCchHHH--HHHcCCCCCCc
Q 025135 183 TRELGIQALAEDGADLVAYGRLFISNPDLVL--RFKLNAPLNKY 224 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~igR~~iadP~l~~--k~~~g~~~~~~ 224 (257)
++.++.++|..| +|.|++|..|..--+-+- ..++|+.+..|
T Consensus 362 ~~~di~kAla~G-A~~V~vGs~~~~t~Esp~~~~~~~g~~~k~y 404 (505)
T PLN02274 362 NSGHIVKALTLG-ASTVMMGSFLAGTTEAPGEYFYQDGVRVKKY 404 (505)
T ss_pred CHHHHHHHHHcC-CCEEEEchhhcccccCCcceeeeCCeEEEEE
Confidence 999999999998 999999999986443332 22456554433
No 112
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.13 E-value=0.00025 Score=59.95 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhC-----CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 162 AQLLRTWRRSYQ-----GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 162 ~~~~~~ir~~~~-----~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
...++.+|+..+ .|+++.||++++.+.++++.| +|.|.+|++++..++....++
T Consensus 150 ~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~g-ad~iivgsai~~~~~~~~~~~ 208 (211)
T cd00429 150 LEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAG-ADVLVAGSALFGSDDYAEAIK 208 (211)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CCEEEECHHHhCCCCHHHHHH
Confidence 344566766663 899999999999999999887 999999999998888766554
No 113
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.12 E-value=0.00014 Score=60.95 Aligned_cols=127 Identities=24% Similarity=0.311 Sum_probs=82.0
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDS 110 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~ 110 (257)
++...++|.|-|=|.+-. + .|..-+.++++.||+.. -.+...++
T Consensus 57 v~~l~~aGadIIAlDaT~-------------R----------~Rp~~l~~li~~i~~~~--~l~MADis----------- 100 (192)
T PF04131_consen 57 VDALAEAGADIIALDATD-------------R----------PRPETLEELIREIKEKY--QLVMADIS----------- 100 (192)
T ss_dssp HHHHHHCT-SEEEEE-SS-------------S----------S-SS-HHHHHHHHHHCT--SEEEEE-S-----------
T ss_pred HHHHHHcCCCEEEEecCC-------------C----------CCCcCHHHHHHHHHHhC--cEEeeecC-----------
Confidence 334457999999987654 1 23346889999999876 35666665
Q ss_pred CcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHH
Q 025135 111 DPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQ 189 (257)
Q Consensus 111 ~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~ 189 (257)
+.+++ ....++| +|+|..+-..|..... . ..+..++++.+++. ++|||+=|++ ||+++.+
T Consensus 101 -t~ee~----~~A~~~G------~D~I~TTLsGYT~~t~------~-~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~ 161 (192)
T PF04131_consen 101 -TLEEA----INAAELG------FDIIGTTLSGYTPYTK------G-DGPDFELVRELVQA-DVPVIAEGRIHTPEQAAK 161 (192)
T ss_dssp -SHHHH----HHHHHTT-------SEEE-TTTTSSTTST------T-SSHHHHHHHHHHHT-TSEEEEESS--SHHHHHH
T ss_pred -CHHHH----HHHHHcC------CCEEEcccccCCCCCC------C-CCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHH
Confidence 35554 4567799 8999765545543221 1 23445677888875 8999999999 9999999
Q ss_pred HHHcCCCcEEEechHHhhCchHHHH
Q 025135 190 ALAEDGADLVAYGRLFISNPDLVLR 214 (257)
Q Consensus 190 ~l~~g~~D~V~igR~~iadP~l~~k 214 (257)
+|+.| ++.|.+|-+ |-.|++.-+
T Consensus 162 al~~G-A~aVVVGsA-ITrP~~It~ 184 (192)
T PF04131_consen 162 ALELG-AHAVVVGSA-ITRPQEITK 184 (192)
T ss_dssp HHHTT--SEEEE-HH-HH-HHHHHH
T ss_pred HHhcC-CeEEEECcc-cCCHHHHHH
Confidence 99998 999999965 456766544
No 114
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.12 E-value=2.1e-05 Score=68.01 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+++.| ++.++++.-. .. ......+.+.++.+++.+++||++.||+ +.++++++++.|
T Consensus 32 ~~~~a~~~~~~g------~~~i~v~dld--~~-------~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~G 96 (233)
T PRK00748 32 PVAQAKAWEDQG------AKWLHLVDLD--GA-------KAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAG 96 (233)
T ss_pred HHHHHHHHHHcC------CCEEEEEeCC--cc-------ccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcC
Confidence 456889999999 8888877521 10 0012234567788888899999999999 899999999987
Q ss_pred CCcEEEechHHhhCchHHHHHHcC
Q 025135 195 GADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 195 ~~D~V~igR~~iadP~l~~k~~~g 218 (257)
||.|.+|+.++.+|+++.++.+.
T Consensus 97 -a~~vilg~~~l~~~~~l~ei~~~ 119 (233)
T PRK00748 97 -VSRVIIGTAAVKNPELVKEACKK 119 (233)
T ss_pred -CCEEEECchHHhCHHHHHHHHHH
Confidence 99999999999999999887654
No 115
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.10 E-value=2e-05 Score=73.11 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCC
Q 025135 75 CRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGR 154 (257)
Q Consensus 75 ~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~ 154 (257)
..++.++|+++|++ + -++.+|+++ ....++++.|.++| +++|.++.+..++...
T Consensus 117 p~l~~~iv~~~~~~-~-V~v~vr~~~-------------~~~~e~a~~l~eaG------vd~I~vhgrt~~~~h~----- 170 (368)
T PRK08649 117 PELITERIAEIRDA-G-VIVAVSLSP-------------QRAQELAPTVVEAG------VDLFVIQGTVVSAEHV----- 170 (368)
T ss_pred HHHHHHHHHHHHhC-e-EEEEEecCC-------------cCHHHHHHHHHHCC------CCEEEEeccchhhhcc-----
Confidence 56789999999985 2 245555542 22467899999999 8999987643322110
Q ss_pred CCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHH
Q 025135 155 PGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 155 ~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ 205 (257)
.....+ ..+.++++..++|||+ |++ |+++|.++++.| ||.|++||+-
T Consensus 171 -~~~~~~-~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aG-AD~V~VG~G~ 218 (368)
T PRK08649 171 -SKEGEP-LNLKEFIYELDVPVIV-GGCVTYTTALHLMRTG-AAGVLVGIGP 218 (368)
T ss_pred -CCcCCH-HHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEEEECCCC
Confidence 011122 2344455567999998 667 999999999866 9999999874
No 116
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=98.09 E-value=9.3e-05 Score=70.30 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=82.9
Q ss_pred HHHHHHHHHHH-cCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 26 QYRQAALNAIQ-AGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 26 ~f~~AA~~a~~-aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
++++.|+...+ .||..++|..|. + + ...-.+.|++||+++ ++ .|.+..+. .
T Consensus 183 ~~~~~a~~~~~~~Gf~a~KiKvG~---------~-----------~----~~~Di~~v~avRea~-~d~~L~vDAN~--~ 235 (441)
T TIGR03247 183 AVVRLAEAAYDRYGFRDFKLKGGV---------L-----------R----GEEEIEAVTALAKRF-PQARITLDPNG--A 235 (441)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCC---------C-----------C----hHHHHHHHHHHHHhC-CCCeEEEECCC--C
Confidence 34445555444 599999998654 0 0 123468899999998 44 45544442 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhH----HHHHHHHHHHhCCcEEEe
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEE----AQLLRTWRRSYQGTFICS 179 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ir~~~~~pvi~~ 179 (257)
.+.++++++++.|++. +.|++ +|-. +.. ...++.+++..++||++.
T Consensus 236 -------wt~~~Ai~~~~~Le~~-------~~~iE--ePv~--------------~~d~~~~~~~la~Lr~~~~iPIa~d 285 (441)
T TIGR03247 236 -------WSLDEAIALCKDLKGV-------LAYAE--DPCG--------------AEQGYSGREVMAEFRRATGLPTATN 285 (441)
T ss_pred -------CCHHHHHHHHHHhhhh-------hceEe--CCCC--------------cccccchHHHHHHHHHhCCCCEEcC
Confidence 3578899999999885 45665 5521 111 345677999999999887
Q ss_pred CCC-CHHHHHHHHHcCCCcEEEe
Q 025135 180 GGF-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 180 G~i-t~~~a~~~l~~g~~D~V~i 201 (257)
..+ +++++..+++.+.+|++.+
T Consensus 286 Es~~~~~~~~~li~~~avdi~~~ 308 (441)
T TIGR03247 286 MIATDWRQMGHALQLQAVDIPLA 308 (441)
T ss_pred CccCCHHHHHHHHHhCCCCEEec
Confidence 666 8999999999999999764
No 117
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.07 E-value=8.2e-05 Score=71.25 Aligned_cols=147 Identities=18% Similarity=0.102 Sum_probs=93.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR 93 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~ 93 (257)
.++.+..-.+-++..+-++...++|.|.|-|..+|| |.+.+.+.|+.||+..++-+
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g------------------------~~~~~~~~i~~i~~~~~~~~ 268 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHG------------------------HQVKMISAIKAVRALDLGVP 268 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCC------------------------CcHHHHHHHHHHHHHCCCCe
Confidence 344444444445555666677789999999999984 23578999999999875446
Q ss_pred EEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCC---cccCCCcCCCCCCCchhHH--HHHHHH
Q 025135 94 VGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPR---YTAYGQTESGRPGTEDEEA--QLLRTW 168 (257)
Q Consensus 94 v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~i 168 (257)
|.+ . + ..+.+ -++.|.++| +|+|.+..+. +...... + . +.+... ..+...
T Consensus 269 vi~--g-~--------~~t~~----~~~~l~~~G------~d~i~vg~g~Gs~~ttr~~~--~-~-g~~~~~a~~~~~~~ 323 (475)
T TIGR01303 269 IVA--G-N--------VVSAE----GVRDLLEAG------ANIIKVGVGPGAMCTTRMMT--G-V-GRPQFSAVLECAAE 323 (475)
T ss_pred EEE--e-c--------cCCHH----HHHHHHHhC------CCEEEECCcCCccccCcccc--C-C-CCchHHHHHHHHHH
Confidence 554 1 1 02333 356677899 8888754221 1110000 0 0 111111 112222
Q ss_pred HHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCch
Q 025135 169 RRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPD 210 (257)
Q Consensus 169 r~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~ 210 (257)
.+..++|||+.||| ++.++.++|.-| +|.||+|+.|..--+
T Consensus 324 ~~~~~~~viadGgi~~~~di~kala~G-A~~vm~g~~~ag~~e 365 (475)
T TIGR01303 324 ARKLGGHVWADGGVRHPRDVALALAAG-ASNVMVGSWFAGTYE 365 (475)
T ss_pred HHHcCCcEEEeCCCCCHHHHHHHHHcC-CCEEeechhhccccc
Confidence 23448999999999 899999999998 999999999875443
No 118
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.06 E-value=0.00024 Score=63.05 Aligned_cols=150 Identities=14% Similarity=0.006 Sum_probs=95.8
Q ss_pred CCCCCCChhhHHHHH------------HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhH
Q 025135 10 PNPQALQTSEIPEVI------------DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRF 77 (257)
Q Consensus 10 ~~p~~lt~~eI~~ii------------~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~ 77 (257)
.+.|.=+.++|++|. ..|..-|+...++|.|-|+ +. .|.|-
T Consensus 47 ~v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiID---aT------------------------~r~rP 99 (283)
T cd04727 47 GVARMADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMID---ES------------------------EVLTP 99 (283)
T ss_pred CeeecCCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEe---cc------------------------CCCCc
Confidence 345666778888765 4567788888999999995 22 12333
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC----------
Q 025135 78 LMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY---------- 147 (257)
Q Consensus 78 ~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~---------- 147 (257)
+.+++..+|+.. .-++.--++ +.++++ ...+.| +|+|-.+.-.|...
T Consensus 100 ~~~~~~~iK~~~-~~l~MAD~s------------tleEal----~a~~~G------ad~I~TTl~gyT~~~~~~~~~~~~ 156 (283)
T cd04727 100 ADEEHHIDKHKF-KVPFVCGAR------------NLGEAL----RRISEG------AAMIRTKGEAGTGNVVEAVRHMRA 156 (283)
T ss_pred HHHHHHHHHHHc-CCcEEccCC------------CHHHHH----HHHHCC------CCEEEecCCCCCCcHHHHHHHHHH
Confidence 577888888876 224432222 355543 345677 77775543222221
Q ss_pred ---------CCcCCCC---CCCchhHHHHHHHHHHHhCCcEE--EeCCC-CHHHHHHHHHcCCCcEEEechHHhh--Cch
Q 025135 148 ---------GQTESGR---PGTEDEEAQLLRTWRRSYQGTFI--CSGGF-TRELGIQALAEDGADLVAYGRLFIS--NPD 210 (257)
Q Consensus 148 ---------~~~~~~~---~~~~~~~~~~~~~ir~~~~~pvi--~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia--dP~ 210 (257)
+.+.... ........+.++.+++.+++||+ +.||| |++++.++++.| ||.|++|++++. ||.
T Consensus 157 i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~G-AdgVaVGSAI~~a~dP~ 235 (283)
T cd04727 157 VNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSENPE 235 (283)
T ss_pred HHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcC-CCEEEEcHHhhcCCCHH
Confidence 0000000 00011224667888888899987 99999 999999999987 999999999995 554
No 119
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.06 E-value=0.00028 Score=61.47 Aligned_cols=137 Identities=20% Similarity=0.178 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHc-CCCEEE--ecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccC
Q 025135 25 DQYRQAALNAIQA-GFDGIE--IHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPA 101 (257)
Q Consensus 25 ~~f~~AA~~a~~a-GfDgVE--Ih~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~ 101 (257)
++=++.|+.|.++ |-|.|. |+.--.||+. =+.+.|++.++-+.+....+=...
T Consensus 76 ~eAv~~a~lare~~~~~~iKlEVi~d~~~Llp-----------------------d~~~tv~aa~~L~~~Gf~vlpyc~- 131 (248)
T cd04728 76 EEAVRTARLAREALGTDWIKLEVIGDDKTLLP-----------------------DPIETLKAAEILVKEGFTVLPYCT- 131 (248)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCcccccc-----------------------CHHHHHHHHHHHHHCCCEEEEEeC-
Confidence 3456778888886 568874 4554444432 156778888888766543331111
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG 181 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~ 181 (257)
++ ..++++|+++| ++++ .|.-...+ ++ .+ ....+.++.+++..++|||+.||
T Consensus 132 ---------dd----~~~ar~l~~~G------~~~v---mPlg~pIG---sg-~G--i~~~~~I~~I~e~~~vpVI~egG 183 (248)
T cd04728 132 ---------DD----PVLAKRLEDAG------CAAV---MPLGSPIG---SG-QG--LLNPYNLRIIIERADVPVIVDAG 183 (248)
T ss_pred ---------CC----HHHHHHHHHcC------CCEe---CCCCcCCC---CC-CC--CCCHHHHHHHHHhCCCcEEEeCC
Confidence 12 34788999999 7777 22111111 11 11 11246777888888899999999
Q ss_pred C-CHHHHHHHHHcCCCcEEEechHHhh--CchHHHH
Q 025135 182 F-TRELGIQALAEDGADLVAYGRLFIS--NPDLVLR 214 (257)
Q Consensus 182 i-t~~~a~~~l~~g~~D~V~igR~~ia--dP~l~~k 214 (257)
| +++++.++++-| +|.|.++.+... ||....+
T Consensus 184 I~tpeda~~AmelG-AdgVlV~SAIt~a~dP~~ma~ 218 (248)
T cd04728 184 IGTPSDAAQAMELG-ADAVLLNTAIAKAKDPVAMAR 218 (248)
T ss_pred CCCHHHHHHHHHcC-CCEEEEChHhcCCCCHHHHHH
Confidence 9 999999999988 999999999985 6766443
No 120
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.06 E-value=0.00014 Score=62.95 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
...++.|.+.|.|.|++-.--+. +.+ .+.+.+++=+++++++++ ++.+|+=....+
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~~----~~~---------------g~~~~v~~ei~~v~~~~~--~~~lKvIlEt~~--- 132 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIGA----LKS---------------GDWDAVEADIRAVVEAAG--GAVLKVIIETCL--- 132 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHHH----hcC---------------CCHHHHHHHHHHHHHhcC--CceEEEEeecCc---
Confidence 44566778889998886543322 221 125667777888888774 356677221111
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC--CcEEEeCCC-CH
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ--GTFICSGGF-TR 184 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~G~i-t~ 184 (257)
.+.++...+++.+.++| +|||..+.+ +.. .....+.++.+++..+ ++|.++||| |.
T Consensus 133 ---L~~e~i~~a~~~~~~ag------adfIKTsTG-~~~-----------~gat~~~v~~m~~~~~~~~~IKasGGIrt~ 191 (221)
T PRK00507 133 ---LTDEEKVKACEIAKEAG------ADFVKTSTG-FST-----------GGATVEDVKLMRETVGPRVGVKASGGIRTL 191 (221)
T ss_pred ---CCHHHHHHHHHHHHHhC------CCEEEcCCC-CCC-----------CCCCHHHHHHHHHHhCCCceEEeeCCcCCH
Confidence 34566678899999999 899986543 211 1122355566777764 679999999 99
Q ss_pred HHHHHHHHcCCCcEEEechHH
Q 025135 185 ELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~igR~~ 205 (257)
++|.++|+.| +|.++..++.
T Consensus 192 ~~a~~~i~aG-A~riGtS~~~ 211 (221)
T PRK00507 192 EDALAMIEAG-ATRLGTSAGV 211 (221)
T ss_pred HHHHHHHHcC-cceEccCcHH
Confidence 9999999998 9999987654
No 121
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=98.04 E-value=0.00017 Score=65.42 Aligned_cols=111 Identities=10% Similarity=0.092 Sum_probs=81.9
Q ss_pred HcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHH
Q 025135 36 QAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGL 115 (257)
Q Consensus 36 ~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~ 115 (257)
+.||..++|..|.+ + ...-.+.|++||+++|++ +.+|+-.+.. .+.++
T Consensus 122 ~~Gf~~~KiKvG~~--------------------~----~~~d~~~v~~vr~~~g~~-~~l~vDaN~~-------w~~~~ 169 (307)
T TIGR01927 122 AEGFRTFKWKVGVG--------------------E----LAREGMLVNLLLEALPDK-AELRLDANGG-------LSPDE 169 (307)
T ss_pred hCCCCEEEEEeCCC--------------------C----hHHHHHHHHHHHHHcCCC-CeEEEeCCCC-------CCHHH
Confidence 68999999986531 1 223468899999999874 3344433212 35788
Q ss_pred HHHHHHHHHh---cCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHH
Q 025135 116 GLAVIQGLNK---LQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQAL 191 (257)
Q Consensus 116 ~~~l~~~L~~---~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l 191 (257)
+.++++.|++ .+ +.||+ +|- ... ..++.+++..++||.+...+ +++++..++
T Consensus 170 A~~~~~~l~~~~~~~------i~~iE--qP~--------------~~~--~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~ 225 (307)
T TIGR01927 170 AQQFLKALDPNLRGR------IAFLE--EPL--------------PDA--DEMSAFSEATGTAIALDESLWELPQLADEY 225 (307)
T ss_pred HHHHHHhcccccCCC------ceEEe--CCC--------------CCH--HHHHHHHHhCCCCEEeCCCcCChHHHHHHH
Confidence 9999999997 77 88887 552 111 45667899999999988887 899999999
Q ss_pred HcCCCcEEEec
Q 025135 192 AEDGADLVAYG 202 (257)
Q Consensus 192 ~~g~~D~V~ig 202 (257)
+.+.+|+|.+=
T Consensus 226 ~~~~~d~i~ik 236 (307)
T TIGR01927 226 GPGWRGALVIK 236 (307)
T ss_pred hcCCCceEEEC
Confidence 99989998764
No 122
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.01 E-value=9.2e-05 Score=68.05 Aligned_cols=134 Identities=22% Similarity=0.181 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
.+-+....++|.|.|-|..+||+- +.+.+.++.+|+..++-+|..= +.
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s------------------------~~~~~~ik~ik~~~~~~~viaG-NV------- 157 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHS------------------------EHVIDMIKKIKKKFPDVPVIAG-NV------- 157 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTS------------------------HHHHHHHHHHHHHSTTSEEEEE-EE-------
T ss_pred HHHHHHHHHcCCCEEEccccCccH------------------------HHHHHHHHHHHHhCCCceEEec-cc-------
Confidence 445555678999999999999652 4567889999999985454321 11
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCC---cccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPR---YTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T 183 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t 183 (257)
-+. +-++.|.++| +|.|-+--+. +.+......+ .+.......+...++.+.+|||+-||+ +
T Consensus 158 ---~T~----e~a~~L~~aG------ad~vkVGiGpGsiCtTr~v~GvG--~PQ~tAv~~~a~~a~~~~v~iIADGGi~~ 222 (352)
T PF00478_consen 158 ---VTY----EGAKDLIDAG------ADAVKVGIGPGSICTTREVTGVG--VPQLTAVYECAEAARDYGVPIIADGGIRT 222 (352)
T ss_dssp ----SH----HHHHHHHHTT-------SEEEESSSSSTTBHHHHHHSBS--CTHHHHHHHHHHHHHCTTSEEEEESS-SS
T ss_pred ---CCH----HHHHHHHHcC------CCEEEEeccCCcccccccccccC--CcHHHHHHHHHHHhhhccCceeecCCcCc
Confidence 123 3456688899 8888764221 1100000000 011122233455666678999999999 8
Q ss_pred HHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 184 RELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
.-+..++|.-| +|.||+|+.|-.--
T Consensus 223 sGDi~KAla~G-Ad~VMlG~llAgt~ 247 (352)
T PF00478_consen 223 SGDIVKALAAG-ADAVMLGSLLAGTD 247 (352)
T ss_dssp HHHHHHHHHTT--SEEEESTTTTTBT
T ss_pred ccceeeeeeec-ccceeechhhccCc
Confidence 99999999998 99999999887543
No 123
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.01 E-value=0.00069 Score=58.60 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=69.6
Q ss_pred HHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchh
Q 025135 82 VREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDE 160 (257)
Q Consensus 82 v~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~ 160 (257)
+..+|+..+++ .||+-.. .+.+++ ....+.| +||+.+. |-+.. .+. ...+.
T Consensus 100 ~~~~r~~~~~~~iiG~s~~-----------~s~~~a----~~A~~~g------aDYv~~G-pv~t~-tK~-----~~~p~ 151 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNL-----------RDRHGA----MEIGELR------PDYLFFG-KLGAD-NKP-----EAHPR 151 (221)
T ss_pred HHHHHHhcCCCCEEEecCC-----------CCHHHH----HHhhhcC------CCEEEEC-CCCCC-CCC-----CCCCC
Confidence 45667777765 4554211 123332 2345678 9999875 33321 110 01222
Q ss_pred HHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 161 EAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 161 ~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
....++++++.+++||++-|||+++++.++++.| +|+|++-++++..+|....+
T Consensus 152 gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~G-A~giAvisai~~~~dp~~a~ 205 (221)
T PRK06512 152 NLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETG-AEFVALERAVFDAHDPPLAV 205 (221)
T ss_pred ChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhC-CCEEEEhHHhhCCCCHHHHH
Confidence 3455667888889999999999999999999998 99999999999777755444
No 124
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.99 E-value=0.00015 Score=64.94 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=100.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCC-cCCCCCCchhhHhh---HHHHHHHHHHHH
Q 025135 13 QALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGIND-RTDEYGGSIENRCR---FLMQLVREVIVA 88 (257)
Q Consensus 13 ~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~-R~D~yGGs~enR~r---~~~eiv~aiR~~ 88 (257)
..||.+++...++. .+..- -=.|-.+||.+| |++-- | ++..+.. ++.+++.+ |..
T Consensus 188 nk~s~d~~~dy~~g----V~~~g-~~adylviNvSs---------PNtpGlr------~lq~k~~L~~ll~~v~~a-~~~ 246 (398)
T KOG1436|consen 188 NKTSEDAILDYVEG----VRVFG-PFADYLVINVSS---------PNTPGLR------SLQKKSDLRKLLTKVVQA-RDK 246 (398)
T ss_pred ccCCcchHHHHHHH----hhhcc-cccceEEEeccC---------CCCcchh------hhhhHHHHHHHHHHHHHH-Hhc
Confidence 35777777655443 22110 013667777776 77631 2 3344433 34444443 222
Q ss_pred --hCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCccc-------CCCcCCCCCCCc
Q 025135 89 --IGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTA-------YGQTESGRPGTE 158 (257)
Q Consensus 89 --vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~-------~~~~~~~~~~~~ 158 (257)
.+.. |+.+|+.++ ...++..+++..+.+.+ +|-+-+++..... ......|+.+++
T Consensus 247 ~~~~~~~pvl~kiapD---------L~~~el~dia~v~kk~~------idg~IvsnttVsrp~~~~~~~~~~etGGLsG~ 311 (398)
T KOG1436|consen 247 LPLGKKPPVLVKIAPD---------LSEKELKDIALVVKKLN------IDGLIVSNTTVSRPKASLVNKLKEETGGLSGP 311 (398)
T ss_pred cccCCCCceEEEeccc---------hhHHHHHHHHHHHHHhC------ccceeecCceeecCccccccccccccCCCCCC
Confidence 2334 799999974 23555666777776776 4444333221111 111122333334
Q ss_pred hh---HHHHHHHHHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-chHHHHHHcC
Q 025135 159 DE---EAQLLRTWRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN-PDLVLRFKLN 218 (257)
Q Consensus 159 ~~---~~~~~~~ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad-P~l~~k~~~g 218 (257)
+. ....++.+.+.+ .+|||++||+ +-.||-+-|..| +.+|.+..+|..+ |-++.||+..
T Consensus 312 plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraG-ASlvQlyTal~yeGp~i~~kIk~E 377 (398)
T KOG1436|consen 312 PLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAG-ASLVQLYTALVYEGPAIIEKIKRE 377 (398)
T ss_pred ccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcC-chHHHHHHHHhhcCchhHHHHHHH
Confidence 33 334445555554 4899999999 899999999998 9999999999976 9999999844
No 125
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=97.99 E-value=0.00027 Score=64.42 Aligned_cols=118 Identities=11% Similarity=0.162 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDH 104 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~ 104 (257)
+++++.|++.++.||..++|+.+ + ..-.++++++|++++ + +.+++-.+..|
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiKv~----------~-----------------~~d~~~v~~vr~~~~-~-~~l~vDaN~~~ 184 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLKIT----------P-----------------QIMHQLVKLRRLRFP-Q-IPLVIDANESY 184 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeC----------C-----------------chhHHHHHHHHHhCC-C-CcEEEECCCCC
Confidence 44566666777889999999852 1 012477999999985 3 33444332222
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T 183 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t 183 (257)
+.+++ ..++.|++.+ +.|++ +|- .+.....++.+++..++||.+...+ +
T Consensus 185 -------~~~~a-~~~~~l~~~~------~~~iE--eP~--------------~~~~~~~~~~l~~~~~~pia~dEs~~~ 234 (324)
T TIGR01928 185 -------DLQDF-PRLKELDRYQ------LLYIE--EPF--------------KIDDLSMLDELAKGTITPICLDESITS 234 (324)
T ss_pred -------CHHHH-HHHHHHhhCC------CcEEE--CCC--------------ChhHHHHHHHHHhhcCCCEeeCCCcCC
Confidence 33444 4689999998 88887 652 2333456778999999999987777 8
Q ss_pred HHHHHHHHHcCCCcEEEe
Q 025135 184 RELGIQALAEDGADLVAY 201 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~i 201 (257)
+.+...+++.+.+|++.+
T Consensus 235 ~~~~~~~~~~~~~dvi~~ 252 (324)
T TIGR01928 235 LDDARNLIELGNVKVINI 252 (324)
T ss_pred HHHHHHHHHcCCCCEEEe
Confidence 999999999999999975
No 126
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.97 E-value=0.00032 Score=60.80 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=42.9
Q ss_pred HHHHHHHHHHh-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 162 AQLLRTWRRSY-QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 162 ~~~~~~ir~~~-~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
...++++++.. +.||.+-||++++.+.++++.| +|.|.+|+++...++....+
T Consensus 162 ~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aG-ad~vvvgsai~~~~d~~~~~ 215 (229)
T PLN02334 162 MDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAG-ANVIVAGSAVFGAPDYAEVI 215 (229)
T ss_pred HHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHH
Confidence 34556677663 4789999999999999999998 99999999999877764443
No 127
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.97 E-value=5.2e-05 Score=66.01 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+.+.| ++++|+.+-..... ........++.+.+.+++|++++||+ ++++++.+++.|
T Consensus 34 ~~e~a~~~~~~G------~~~l~i~dl~~~~~---------~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~G 98 (241)
T PRK13585 34 PVEVAKRWVDAG------AETLHLVDLDGAFE---------GERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLG 98 (241)
T ss_pred HHHHHHHHHHcC------CCEEEEEechhhhc---------CCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcC
Confidence 356788888899 88888765321100 12233456777888889999999999 899999999887
Q ss_pred CCcEEEechHHhhCchHHHHHHcC
Q 025135 195 GADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 195 ~~D~V~igR~~iadP~l~~k~~~g 218 (257)
||.|.+|..++.+|+++.++.+.
T Consensus 99 -a~~v~iGs~~~~~~~~~~~i~~~ 121 (241)
T PRK13585 99 -VDRVILGTAAVENPEIVRELSEE 121 (241)
T ss_pred -CCEEEEChHHhhChHHHHHHHHH
Confidence 99999999999999999998765
No 128
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.97 E-value=0.00021 Score=68.56 Aligned_cols=148 Identities=16% Similarity=0.070 Sum_probs=97.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR 93 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~ 93 (257)
.++.+....+-++..+.++...++|.|.|-|.++||+ .+.+.+.|+.||+..++-+
T Consensus 215 ~l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~------------------------~~~~~~~i~~ik~~~p~~~ 270 (479)
T PRK07807 215 RLRVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGH------------------------QEKMLEALRAVRALDPGVP 270 (479)
T ss_pred ccchHhhhccChhHHHHHHHHHHhCCCEEEEeccCCc------------------------cHHHHHHHHHHHHHCCCCe
Confidence 3445555555556667777778899999999999953 2468899999999986534
Q ss_pred EEE-EEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCC---cccCCCcCCCCCCCchhHHHHHHHHH
Q 025135 94 VGV-RMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPR---YTAYGQTESGRPGTEDEEAQLLRTWR 169 (257)
Q Consensus 94 v~v-rls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ir 169 (257)
|.. -+ .+.+. ++.|.++| +|+|-+--+. +.....+. . +.+. ...+..+.
T Consensus 271 v~agnv------------~t~~~----a~~l~~aG------ad~v~vgig~gsictt~~~~~---~-~~p~-~~av~~~~ 323 (479)
T PRK07807 271 IVAGNV------------VTAEG----TRDLVEAG------ADIVKVGVGPGAMCTTRMMTG---V-GRPQ-FSAVLECA 323 (479)
T ss_pred EEeecc------------CCHHH----HHHHHHcC------CCEEEECccCCcccccccccC---C-chhH-HHHHHHHH
Confidence 432 11 23443 55677799 8887642111 11111000 0 1222 23333333
Q ss_pred H---HhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHH
Q 025135 170 R---SYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVL 213 (257)
Q Consensus 170 ~---~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~ 213 (257)
+ .+++|||+-||+ ++.++.++|..| +|.|++|..|..-.+-+-
T Consensus 324 ~~~~~~~~~via~ggi~~~~~~~~al~~g-a~~v~~g~~~ag~~Espg 370 (479)
T PRK07807 324 AAARELGAHVWADGGVRHPRDVALALAAG-ASNVMIGSWFAGTYESPG 370 (479)
T ss_pred HHHHhcCCcEEecCCCCCHHHHHHHHHcC-CCeeeccHhhccCccCCC
Confidence 3 568999999999 899999999987 999999999997665554
No 129
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.96 E-value=0.00034 Score=60.00 Aligned_cols=106 Identities=21% Similarity=0.195 Sum_probs=73.4
Q ss_pred HHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchh
Q 025135 82 VREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDE 160 (257)
Q Consensus 82 v~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~ 160 (257)
+...|+..++. .||+=.+ +.++ +...++.| +||+-+. |-|.+..+ ...++.
T Consensus 94 ~~~ar~~~~~~~iIG~S~h------------~~ee----a~~A~~~g------~DYv~~G-pifpT~tK-----~~~~~~ 145 (211)
T COG0352 94 LAEARELLGPGLIIGLSTH------------DLEE----ALEAEELG------ADYVGLG-PIFPTSTK-----PDAPPL 145 (211)
T ss_pred hHHHHHhcCCCCEEEeecC------------CHHH----HHHHHhcC------CCEEEEC-CcCCCCCC-----CCCCcc
Confidence 34456667765 5654332 2333 45567788 8999873 43332211 112333
Q ss_pred HHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 161 EAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 161 ~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
-+..++.+++..++|+++-||++++.+.++++.| +|+|++-|+++..+|.....+
T Consensus 146 G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~G-a~gVAvvsai~~a~d~~~a~~ 200 (211)
T COG0352 146 GLEGLREIRELVNIPVVAIGGINLENVPEVLEAG-ADGVAVVSAITSAADPAAAAK 200 (211)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhC-CCeEEehhHhhcCCCHHHHHH
Confidence 4567778888888999999999999999999998 999999999998877765443
No 130
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.95 E-value=0.00032 Score=63.79 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHH-cCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 25 DQYRQAALNAIQ-AGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~-aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
++|.++.++... +|.|.|-|..+||| ...+.+.|+.||+..++.+|.. ..
T Consensus 108 ~d~er~~~L~~~~~g~D~iviD~AhGh------------------------s~~~i~~ik~ik~~~P~~~vIa---GN-- 158 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICIDVANGY------------------------SEHFVQFVAKAREAWPDKTICA---GN-- 158 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCc------------------------HHHHHHHHHHHHHhCCCCcEEE---ec--
Confidence 456566655553 79999999999975 3468899999999986544321 11
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCC--C-cccCCCcCCCCCCCchh--HHHHHHHHHHHhCCcEEE
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQP--R-YTAYGQTESGRPGTEDE--EAQLLRTWRRSYQGTFIC 178 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~--~-~~~~~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~ 178 (257)
--+. +.++.|.++| +|.+-+--+ . +.+..... . +.|. ....+....+..++|||+
T Consensus 159 ------V~T~----e~a~~Li~aG------AD~vKVGIGpGSiCtTr~vtG---v-G~PQltAV~~~a~~a~~~gvpiIA 218 (346)
T PRK05096 159 ------VVTG----EMVEELILSG------ADIVKVGIGPGSVCTTRVKTG---V-GYPQLSAVIECADAAHGLGGQIVS 218 (346)
T ss_pred ------ccCH----HHHHHHHHcC------CCEEEEcccCCccccCccccc---c-ChhHHHHHHHHHHHHHHcCCCEEe
Confidence 0122 3567788899 777754211 0 11110000 0 1122 122334455667899999
Q ss_pred eCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHH
Q 025135 179 SGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVL 213 (257)
Q Consensus 179 ~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~ 213 (257)
-||+ ++-+..++|..| +|+||+|..|..--+-|-
T Consensus 219 DGGi~~sGDI~KAlaaG-Ad~VMlGsllAGt~EsPG 253 (346)
T PRK05096 219 DGGCTVPGDVAKAFGGG-ADFVMLGGMLAGHEESGG 253 (346)
T ss_pred cCCcccccHHHHHHHcC-CCEEEeChhhcCcccCCC
Confidence 9999 788999999988 999999999876554443
No 131
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.94 E-value=0.00021 Score=68.96 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCC
Q 025135 26 QYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHL 105 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~ 105 (257)
++.+-|+.+.++|+|.|+|-.+||+ .+...+.|+.+|+.++. ++.|.-.--
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~------------------------~~~~~~~i~~ir~~~~~-~~~V~aGnV---- 292 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGY------------------------SEWQKRTLDWIREKYGD-SVKVGAGNV---- 292 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccc------------------------cHHHHHHHHHHHHhCCC-CceEEeccc----
Confidence 3445566677899999999888753 23457899999998874 233333210
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCc---ccCCCcCCCCCCCchhHHHHHHHHHHH-------hC--
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRY---TAYGQTESGRPGTEDEEAQLLRTWRRS-------YQ-- 173 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ir~~-------~~-- 173 (257)
.+.+ -++.|.++| +|+|-+..+.- ...... + . +.+ ....+..+.++ .+
T Consensus 293 -----~t~e----~a~~li~aG------Ad~I~vg~g~Gs~c~tr~~~--~-~-g~~-~~~ai~~~~~a~~~~~~~~g~~ 352 (502)
T PRK07107 293 -----VDRE----GFRYLAEAG------ADFVKVGIGGGSICITREQK--G-I-GRG-QATALIEVAKARDEYFEETGVY 352 (502)
T ss_pred -----cCHH----HHHHHHHcC------CCEEEECCCCCcCccccccc--C-C-Ccc-HHHHHHHHHHHHHHHHhhcCCc
Confidence 1333 355677899 88876642211 000000 0 0 112 12233333332 24
Q ss_pred CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 174 GTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 174 ~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
+|||+-||+ +.-+..++|.-| +|+||+||.|..--
T Consensus 353 ~~viadgGir~~gdi~KAla~G-A~~vm~G~~~ag~~ 388 (502)
T PRK07107 353 IPICSDGGIVYDYHMTLALAMG-ADFIMLGRYFARFD 388 (502)
T ss_pred ceEEEcCCCCchhHHHHHHHcC-CCeeeeChhhhccc
Confidence 899999999 889999999988 99999999998643
No 132
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.94 E-value=0.00084 Score=58.79 Aligned_cols=165 Identities=19% Similarity=0.178 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCCCEEEec------ccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEE
Q 025135 25 DQYRQAALNAIQAGFDGIEIH------GAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVR 97 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh------~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vr 97 (257)
+.+.+.++...++|.|.+||. .+-|-.+.+. ++|.=+=|- ..++..++++.+|+.+... .+.+.
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a-----~~~al~~g~----~~~~~~~~~~~vr~~~~~pv~lm~y 84 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAA-----SERALANGV----TLKDVLELVKEIRKKNTIPIVLMGY 84 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH-----HHHHHHcCC----CHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 567788888899999999998 3333222221 111111111 1258899999999876332 24457
Q ss_pred EccC-----CCC---------CCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc----------cCCC---
Q 025135 98 MSPA-----IDH---------LDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT----------AYGQ--- 149 (257)
Q Consensus 98 ls~~-----~~~---------~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~----------~~~~--- 149 (257)
+++. +.| ++. -...+.++..++.+.+.+.| +..+-+..|... ...+
T Consensus 85 ~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g------~~~i~~i~P~T~~~~i~~i~~~~~~~vy~ 158 (242)
T cd04724 85 YNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYG------LDLIFLVAPTTPDERIKKIAELASGFIYY 158 (242)
T ss_pred cCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcC------CcEEEEeCCCCCHHHHHHHHhhCCCCEEE
Confidence 6751 111 100 01225566677888888888 554443333211 0000
Q ss_pred -cCCCCCC----CchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 150 -TESGRPG----TEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 150 -~~~~~~~----~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+..+..+ ......+.++.+|+..+.||++.||+ +++++.++++. +|.|.+|.+++
T Consensus 159 ~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~--ADgvVvGSaiv 219 (242)
T cd04724 159 VSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY--ADGVIVGSALV 219 (242)
T ss_pred EeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc--CCEEEECHHHH
Confidence 0011111 11233466778888888999999999 68899988765 99999998776
No 133
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.93 E-value=0.00068 Score=59.15 Aligned_cols=136 Identities=19% Similarity=0.162 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHc-CCCEEEe--cccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccC
Q 025135 25 DQYRQAALNAIQA-GFDGIEI--HGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPA 101 (257)
Q Consensus 25 ~~f~~AA~~a~~a-GfDgVEI--h~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~ 101 (257)
++=++.|+.|+|+ |-|.|.| +.-.-||+. =+.+.|++.++-+.+....+=...
T Consensus 76 ~eAv~~a~lare~~~~~~iKlEVi~d~~~llp-----------------------d~~~tv~aa~~L~~~Gf~vlpyc~- 131 (250)
T PRK00208 76 EEAVRTARLAREALGTNWIKLEVIGDDKTLLP-----------------------DPIETLKAAEILVKEGFVVLPYCT- 131 (250)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCCCc-----------------------CHHHHHHHHHHHHHCCCEEEEEeC-
Confidence 3456778888885 5688754 443322221 256788888888766543331111
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG 181 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~ 181 (257)
++ ..++++|+++| ++++ .|.-...+ ++. + ....+.++.+++..++|||+.||
T Consensus 132 ---------~d----~~~ak~l~~~G------~~~v---mPlg~pIG---sg~-g--i~~~~~i~~i~e~~~vpVIveaG 183 (250)
T PRK00208 132 ---------DD----PVLAKRLEEAG------CAAV---MPLGAPIG---SGL-G--LLNPYNLRIIIEQADVPVIVDAG 183 (250)
T ss_pred ---------CC----HHHHHHHHHcC------CCEe---CCCCcCCC---CCC-C--CCCHHHHHHHHHhcCCeEEEeCC
Confidence 12 34788899999 7777 22111111 111 1 11245678888888899999999
Q ss_pred C-CHHHHHHHHHcCCCcEEEechHHhh--CchHHH
Q 025135 182 F-TRELGIQALAEDGADLVAYGRLFIS--NPDLVL 213 (257)
Q Consensus 182 i-t~~~a~~~l~~g~~D~V~igR~~ia--dP~l~~ 213 (257)
| +++++.++++-| +|.|.++.+... ||....
T Consensus 184 I~tpeda~~AmelG-AdgVlV~SAItka~dP~~ma 217 (250)
T PRK00208 184 IGTPSDAAQAMELG-ADAVLLNTAIAVAGDPVAMA 217 (250)
T ss_pred CCCHHHHHHHHHcC-CCEEEEChHhhCCCCHHHHH
Confidence 9 999999999998 999999999985 576543
No 134
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=97.93 E-value=0.00051 Score=62.84 Aligned_cols=112 Identities=20% Similarity=0.191 Sum_probs=82.8
Q ss_pred cCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHH
Q 025135 37 AGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLG 116 (257)
Q Consensus 37 aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~ 116 (257)
.||..++|+.|. .|.+++ --.+.|++||+++|++ +.+|+-.+.. .+.+++
T Consensus 101 ~G~~~~KvKVg~------------------~~~~~~----~Di~rv~avRe~lGpd-~~LrvDAN~~-------ws~~~A 150 (327)
T PRK02901 101 PGCRTAKVKVAE------------------PGQTLA----DDVARVNAVRDALGPD-GRVRVDANGG-------WSVDEA 150 (327)
T ss_pred CCCCEEEEEECC------------------CCCCHH----HHHHHHHHHHHhcCCC-CEEEEECCCC-------CCHHHH
Confidence 599999998763 122333 4567899999999985 3444443222 357889
Q ss_pred HHHHHHH-HhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 117 LAVIQGL-NKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 117 ~~l~~~L-~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
+++++.| ++.+ +.|++ +|. .. ...+..+++.+++||.+...+ +.++..++++.+
T Consensus 151 i~~~~~L~e~~~------l~~iE--qP~--------------~~--~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~ 206 (327)
T PRK02901 151 VAAARALDADGP------LEYVE--QPC--------------AT--VEELAELRRRVGVPIAADESIRRAEDPLRVARAG 206 (327)
T ss_pred HHHHHHhhhccC------ceEEe--cCC--------------CC--HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcC
Confidence 9999999 6777 88887 552 11 245567899999999887777 899999999999
Q ss_pred CCcEEEec
Q 025135 195 GADLVAYG 202 (257)
Q Consensus 195 ~~D~V~ig 202 (257)
.+|+|.+=
T Consensus 207 a~dvi~ik 214 (327)
T PRK02901 207 AADVAVLK 214 (327)
T ss_pred CCCEEEeC
Confidence 99998764
No 135
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.92 E-value=0.0004 Score=58.93 Aligned_cols=127 Identities=19% Similarity=0.215 Sum_probs=82.2
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEE-ccCCCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRM-SPAIDHLDAT 108 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrl-s~~~~~~~~~ 108 (257)
.++.+.++|+|.|-+|+-. + ...+.++++.+|+. |- ++++-+ ++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~---------~----------------~~~~~~~i~~~~~~-g~-~~~~~~~~~~------- 113 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA---------D----------------DATIKGAVKAAKKH-GK-EVQVDLINVK------- 113 (206)
T ss_pred HHHHHHHcCCCEEEEeccC---------C----------------HHHHHHHHHHHHHc-CC-EEEEEecCCC-------
Confidence 4677889999999998653 1 02356778887763 43 566654 321
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCc-EEEeCCCCHHHH
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGT-FICSGGFTRELG 187 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~G~it~~~a 187 (257)
++.+ -++.+.+.| +|++.+. |.+....+ .+.....++.+++.++.+ +.+.||++++.+
T Consensus 114 --t~~~----~~~~~~~~g------~d~v~~~-pg~~~~~~--------~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~ 172 (206)
T TIGR03128 114 --DKVK----RAKELKELG------ADYIGVH-TGLDEQAK--------GQNPFEDLQTILKLVKEARVAVAGGINLDTI 172 (206)
T ss_pred --ChHH----HHHHHHHcC------CCEEEEc-CCcCcccC--------CCCCHHHHHHHHHhcCCCcEEEECCcCHHHH
Confidence 1222 234445668 8898774 44432111 111234456666666544 555899999999
Q ss_pred HHHHHcCCCcEEEechHHhhCchHH
Q 025135 188 IQALAEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 188 ~~~l~~g~~D~V~igR~~iadP~l~ 212 (257)
.++++.| +|.|.+||.+...++.-
T Consensus 173 ~~~~~~G-a~~v~vGsai~~~~d~~ 196 (206)
T TIGR03128 173 PDVIKLG-PDIVIVGGAITKAADPA 196 (206)
T ss_pred HHHHHcC-CCEEEEeehhcCCCCHH
Confidence 9999887 99999999999776643
No 136
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=97.92 E-value=0.00017 Score=66.78 Aligned_cols=101 Identities=17% Similarity=0.037 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCC
Q 025135 76 RFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRP 155 (257)
Q Consensus 76 r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~ 155 (257)
.+.-+-|+.+|+.++- ||.||=-. +.++ ++.+.+.| +++|.+++-.-.+..
T Consensus 211 ~~~w~~i~~~~~~~~~-pvivKgv~-----------~~~d----a~~~~~~G------~~~i~vs~hGGr~~d------- 261 (356)
T PF01070_consen 211 SLTWDDIEWIRKQWKL-PVIVKGVL-----------SPED----AKRAVDAG------VDGIDVSNHGGRQLD------- 261 (356)
T ss_dssp T-SHHHHHHHHHHCSS-EEEEEEE------------SHHH----HHHHHHTT-------SEEEEESGTGTSST-------
T ss_pred CCCHHHHHHHhcccCC-ceEEEecc-----------cHHH----HHHHHhcC------CCEEEecCCCcccCc-------
Confidence 3556779999998854 88777432 2333 56788899 999998753221111
Q ss_pred CCchhHHHHHHHHHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 156 GTEDEEAQLLRTWRRSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 156 ~~~~~~~~~~~~ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
........+..++++++ +|||+.||| +..|+.++|.-| +|+|++||+++.
T Consensus 262 -~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLG-A~~v~igr~~l~ 314 (356)
T PF01070_consen 262 -WGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALG-ADAVGIGRPFLY 314 (356)
T ss_dssp -TS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT--SEEEESHHHHH
T ss_pred -cccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcC-CCeEEEccHHHH
Confidence 12233466777888775 899999999 899999999998 999999999984
No 137
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.92 E-value=7.9e-05 Score=65.19 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG 195 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~ 195 (257)
.++++.+.+.| ++++|+..-... . ....+...++++.+.+.+||.+.||+ |.+++++++..|
T Consensus 35 ~~~a~~~~~~g------~~~l~ivDLd~~---------~-g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~G- 97 (241)
T PRK14024 35 LDAALAWQRDG------AEWIHLVDLDAA---------F-GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATG- 97 (241)
T ss_pred HHHHHHHHHCC------CCEEEEEecccc---------C-CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCC-
Confidence 46888899999 888888753111 0 12334577888988899999999999 899999999997
Q ss_pred CcEEEechHHhhCchHHHHHHcC
Q 025135 196 ADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 196 ~D~V~igR~~iadP~l~~k~~~g 218 (257)
||-|.+|-.++.||+++.++.+.
T Consensus 98 a~kvviGs~~l~~p~l~~~i~~~ 120 (241)
T PRK14024 98 CARVNIGTAALENPEWCARVIAE 120 (241)
T ss_pred CCEEEECchHhCCHHHHHHHHHH
Confidence 99999999999999999998753
No 138
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.92 E-value=0.00072 Score=56.99 Aligned_cols=130 Identities=19% Similarity=0.134 Sum_probs=83.8
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE-EccCCCCCCCCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR-MSPAIDHLDATD 109 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr-ls~~~~~~~~~~ 109 (257)
++.+.++|+|+|-+|+.- + ...+.++++.+|+. |- .+++- +++.
T Consensus 70 ~~~~~~aGad~i~~h~~~---------~----------------~~~~~~~i~~~~~~-g~-~~~v~~~~~~-------- 114 (202)
T cd04726 70 AEMAFKAGADIVTVLGAA---------P----------------LSTIKKAVKAAKKY-GK-EVQVDLIGVE-------- 114 (202)
T ss_pred HHHHHhcCCCEEEEEeeC---------C----------------HHHHHHHHHHHHHc-CC-eEEEEEeCCC--------
Confidence 466789999999999642 0 12356678888753 32 45554 4442
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHH
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~ 189 (257)
+..+. .+ +.+.| +|++-+. +.+..... ........++.+++..+.|+++.||++++.+.+
T Consensus 115 --t~~e~---~~-~~~~~------~d~v~~~-~~~~~~~~-------~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~ 174 (202)
T cd04726 115 --DPEKR---AK-LLKLG------VDIVILH-RGIDAQAA-------GGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPE 174 (202)
T ss_pred --CHHHH---HH-HHHCC------CCEEEEc-Cccccccc-------CCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHH
Confidence 33332 23 44567 7887663 22221110 011223455666665678999999999999999
Q ss_pred HHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 190 ALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 190 ~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
+++.| +|.|.+|+++...+++...++
T Consensus 175 ~~~~G-ad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 175 FKKAG-ADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred HHhcC-CCEEEEeehhcCCCCHHHHHh
Confidence 99987 999999999997777655443
No 139
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.91 E-value=8.9e-05 Score=63.73 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG 195 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~ 195 (257)
.++++...+.|.|. +-|++++...- ......+.++++.+.+.+|+-+.||| +.+++.++|..|
T Consensus 33 VelA~~Y~e~GADE---lvFlDItAs~~------------gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aG- 96 (256)
T COG0107 33 VELAKRYNEEGADE---LVFLDITASSE------------GRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAG- 96 (256)
T ss_pred HHHHHHHHHcCCCe---EEEEecccccc------------cchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcC-
Confidence 56888999999543 66777764211 12234567778888899999999999 999999999998
Q ss_pred CcEEEechHHhhCchHHHHHHc
Q 025135 196 ADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 196 ~D~V~igR~~iadP~l~~k~~~ 217 (257)
+|=|++-.+.+.||+|+.++.+
T Consensus 97 ADKVSINsaAv~~p~lI~~~a~ 118 (256)
T COG0107 97 ADKVSINSAAVKDPELITEAAD 118 (256)
T ss_pred CCeeeeChhHhcChHHHHHHHH
Confidence 9999999999999999999986
No 140
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.91 E-value=0.00033 Score=66.31 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=85.8
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE-EccCCCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR-MSPAIDHLDAT 108 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr-ls~~~~~~~~~ 108 (257)
-+..|.++|.|+|-+|+.. + + .-+.++++.+|+ .|. .+++- +++.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~---------~-------------~---~~~~~~i~~a~~-~G~-~~~~g~~s~~------- 118 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLA---------D-------------D---STIEDAVRAARK-YGV-RLMADLINVP------- 118 (430)
T ss_pred HHHHHHHcCCCEEEEecCC---------C-------------h---HHHHHHHHHHHH-cCC-EEEEEecCCC-------
Confidence 4567889999999988532 0 0 114567777776 454 33332 4432
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHH
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGI 188 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~ 188 (257)
++. +.++.+.+.| +||+.+. +.+..... .......++.+++.+++||++.||++.+.+.
T Consensus 119 --t~~----e~~~~a~~~G------aD~I~~~-pg~~~~~~--------~~~~~~~l~~l~~~~~iPI~a~GGI~~~n~~ 177 (430)
T PRK07028 119 --DPV----KRAVELEELG------VDYINVH-VGIDQQML--------GKDPLELLKEVSEEVSIPIAVAGGLDAETAA 177 (430)
T ss_pred --CHH----HHHHHHHhcC------CCEEEEE-eccchhhc--------CCChHHHHHHHHhhCCCcEEEECCCCHHHHH
Confidence 122 2356677889 8999765 33321110 1112356777888888999999999999999
Q ss_pred HHHHcCCCcEEEechHHhhCchHH
Q 025135 189 QALAEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 189 ~~l~~g~~D~V~igR~~iadP~l~ 212 (257)
++++.| +|.|.+||.++..+++.
T Consensus 178 ~~l~aG-Adgv~vGsaI~~~~d~~ 200 (430)
T PRK07028 178 KAVAAG-ADIVIVGGNIIKSADVT 200 (430)
T ss_pred HHHHcC-CCEEEEChHHcCCCCHH
Confidence 999998 99999999999887764
No 141
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.87 E-value=0.00011 Score=64.13 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=68.4
Q ss_pred HHHHHHHHh-cCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 117 LAVIQGLNK-LQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 117 ~~l~~~L~~-~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
.++++.+.+ .| ++.+|+..-.... .....+...++++.+.+.+||.+.||+ +.+++++++..|
T Consensus 34 ~~~a~~~~~~~G------a~~l~ivDLd~a~---------~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~G 98 (234)
T PRK13587 34 EESIAYYSQFEC------VNRIHIVDLIGAK---------AQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAG 98 (234)
T ss_pred HHHHHHHHhccC------CCEEEEEECcccc---------cCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCC
Confidence 347888888 68 8888887521110 123345667888888888999999999 899999999987
Q ss_pred CCcEEEechHHhhCchHHHHHHcC
Q 025135 195 GADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 195 ~~D~V~igR~~iadP~l~~k~~~g 218 (257)
||-|.+|...+.||++++++.+-
T Consensus 99 -a~kvvigt~a~~~~~~l~~~~~~ 121 (234)
T PRK13587 99 -INYCIVGTKGIQDTDWLKEMAHT 121 (234)
T ss_pred -CCEEEECchHhcCHHHHHHHHHH
Confidence 99999999999999999998753
No 142
>PLN02979 glycolate oxidase
Probab=97.86 E-value=0.00079 Score=62.11 Aligned_cols=99 Identities=13% Similarity=-0.052 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCC
Q 025135 78 LMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGT 157 (257)
Q Consensus 78 ~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~ 157 (257)
.-+-|+.+|+.++- ||.+|--. +.+ -++.+.+.| +|.|.+++-.-.+.. .
T Consensus 211 tW~dl~wlr~~~~~-PvivKgV~-----------~~~----dA~~a~~~G------vd~I~VsnhGGrqld--------~ 260 (366)
T PLN02979 211 SWKDVQWLQTITKL-PILVKGVL-----------TGE----DARIAIQAG------AAGIIVSNHGARQLD--------Y 260 (366)
T ss_pred CHHHHHHHHhccCC-CEEeecCC-----------CHH----HHHHHHhcC------CCEEEECCCCcCCCC--------C
Confidence 34678899987753 78877432 223 456788899 899988753221111 1
Q ss_pred chhHHHHHHHHHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 158 EDEEAQLLRTWRRSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 158 ~~~~~~~~~~ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
-+.....+.++++.+. +||++.||| +..|+.++|.-| +|+|++||+++.
T Consensus 261 ~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALG-AdaV~iGrp~L~ 312 (366)
T PLN02979 261 VPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVF 312 (366)
T ss_pred chhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 1233456667777764 899999999 899999999998 999999999993
No 143
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.84 E-value=0.00078 Score=59.47 Aligned_cols=139 Identities=19% Similarity=0.152 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC--eEEEEEccCCCC
Q 025135 27 YRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD--RVGVRMSPAIDH 104 (257)
Q Consensus 27 f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~--~v~vrls~~~~~ 104 (257)
+...++.|.+.|.|+|++..-.| .+ +..+++ +.+++|++.+.+. ++.+.+-....+
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~g-------------------~~--~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh 149 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNVG-------------------SD--TEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPH 149 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEecC-------------------Cc--hHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCcc
Confidence 33446667889999999764332 11 112233 6677777776432 554433221111
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCC-
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT- 183 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it- 183 (257)
.+. .+.+...+.++...+.| +|||-+. +. . ....++.+.+..++||++.||++
T Consensus 150 --~~~-~~~~~~~~~~~~a~~~G------ADyikt~---~~-----------~---~~~~l~~~~~~~~iPVva~GGi~~ 203 (258)
T TIGR01949 150 --IDD-RDPELVAHAARLGAELG------ADIVKTP---YT-----------G---DIDSFRDVVKGCPAPVVVAGGPKT 203 (258)
T ss_pred --ccc-ccHHHHHHHHHHHHHHC------CCEEecc---CC-----------C---CHHHHHHHHHhCCCcEEEecCCCC
Confidence 111 22344445567778899 9999753 10 1 13456667777789999999995
Q ss_pred ------HHHHHHHHHcCCCcEEEechHHhhCchHHHH
Q 025135 184 ------RELGIQALAEDGADLVAYGRLFISNPDLVLR 214 (257)
Q Consensus 184 ------~~~a~~~l~~g~~D~V~igR~~iadP~l~~k 214 (257)
.+...++++.| ++.|+++|.++..+|....
T Consensus 204 ~~~~~~~~~i~~~~~aG-a~Gia~g~~i~~~~dp~~~ 239 (258)
T TIGR01949 204 NSDREFLQMIKDAMEAG-AAGVAVGRNIFQHDDPVGI 239 (258)
T ss_pred CCHHHHHHHHHHHHHcC-CcEEehhhHhhcCCCHHHH
Confidence 44556666877 9999999999988875433
No 144
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.83 E-value=0.00027 Score=60.24 Aligned_cols=140 Identities=20% Similarity=0.229 Sum_probs=91.4
Q ss_pred HHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCc
Q 025135 33 NAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP 112 (257)
Q Consensus 33 ~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~ 112 (257)
.|.+||.|-|||- + .+.|.. . |-.++ ..-++++.+..|+-.+.-++.|.+.-. .+
T Consensus 76 ~aV~AGAdliEIG--N---fDsFY~---q------Gr~f~--a~eVL~Lt~~tR~LLP~~~LsVTVPHi---------L~ 130 (242)
T PF04481_consen 76 AAVKAGADLIEIG--N---FDSFYA---Q------GRRFS--AEEVLALTRETRSLLPDITLSVTVPHI---------LP 130 (242)
T ss_pred HHHHhCCCEEEec--c---hHHHHh---c------CCeec--HHHHHHHHHHHHHhCCCCceEEecCcc---------cc
Confidence 3568999999982 2 233331 1 11122 345888899999998766788877521 45
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCC---CchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHH
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPG---TEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~ 189 (257)
.++=.+|+..|+++| +|+|...++.-..+. ..+-.+ .-.+.......|.+.+++||++..|++.-.+--
T Consensus 131 ld~Qv~LA~~L~~~G------aDiIQTEGgtss~p~--~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~Pm 202 (242)
T PF04481_consen 131 LDQQVQLAEDLVKAG------ADIIQTEGGTSSKPT--SPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPM 202 (242)
T ss_pred HHHHHHHHHHHHHhC------CcEEEcCCCCCCCCC--CcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHH
Confidence 777789999999999 899976443222111 000000 001222344568888999999999997767777
Q ss_pred HHHcCCCcEEEechHHh
Q 025135 190 ALAEDGADLVAYGRLFI 206 (257)
Q Consensus 190 ~l~~g~~D~V~igR~~i 206 (257)
++..| +..|++|...=
T Consensus 203 AiaaG-AsGVGVGSavn 218 (242)
T PF04481_consen 203 AIAAG-ASGVGVGSAVN 218 (242)
T ss_pred HHHcC-CcccchhHHhh
Confidence 78887 88999997653
No 145
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.83 E-value=0.00062 Score=58.16 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=39.4
Q ss_pred HHHHHHHHHhC-----CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 163 QLLRTWRRSYQ-----GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 163 ~~~~~ir~~~~-----~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
..++.+++..+ .+|.+.||++++.+.++++.| +|.|.+|++++.++|....++
T Consensus 155 ~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~G-aD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 155 EKIRELRKLIDERGLDILIEVDGGINADNIKECAEAG-ADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHHHH
Confidence 34445555443 225577999999999999876 999999999999888755543
No 146
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.81 E-value=0.0034 Score=52.06 Aligned_cols=54 Identities=26% Similarity=0.211 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 162 AQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 162 ~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
...++.+++..++||++.||++++++.++++.| +|.|++|+.+..+++....++
T Consensus 139 ~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~G-a~~i~~g~~i~~~~~~~~~~~ 192 (196)
T cd00564 139 LELLREIAELVEIPVVAIGGITPENAAEVLAAG-ADGVAVISAITGADDPAAAAR 192 (196)
T ss_pred HHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhcCCCHHHHHH
Confidence 455677777788999999999999999999887 999999999998888665554
No 147
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.81 E-value=0.0014 Score=54.69 Aligned_cols=132 Identities=21% Similarity=0.237 Sum_probs=83.7
Q ss_pred CCCChhhHHHHHHHHHHHH-------------HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHH
Q 025135 13 QALQTSEIPEVIDQYRQAA-------------LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLM 79 (257)
Q Consensus 13 ~~lt~~eI~~ii~~f~~AA-------------~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~ 79 (257)
+.++.+++.+.++.+.+.+ ..|.+.|+|||-+.... +
T Consensus 34 k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~~~~--------------------------~---- 83 (180)
T PF02581_consen 34 KDLSDEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLGQSD--------------------------L---- 83 (180)
T ss_dssp SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEBTTS--------------------------S----
T ss_pred CCCCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEecccc--------------------------c----
Confidence 4678888888888776655 34567888888764321 0
Q ss_pred HHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCc
Q 025135 80 QLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTE 158 (257)
Q Consensus 80 eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~ 158 (257)
. ...+|+..+++ .|++=.+ +.++ ++.+.+.| +||+.++ |-|.+... ....
T Consensus 84 ~-~~~~r~~~~~~~~ig~S~h------------~~~e----~~~a~~~g------~dYv~~g-pvf~T~sk-----~~~~ 134 (180)
T PF02581_consen 84 P-PAEARKLLGPDKIIGASCH------------SLEE----AREAEELG------ADYVFLG-PVFPTSSK-----PGAP 134 (180)
T ss_dssp S-HHHHHHHHTTTSEEEEEES------------SHHH----HHHHHHCT------TSEEEEE-TSS--SSS-----SS-T
T ss_pred c-hHHhhhhcccceEEEeecC------------cHHH----HHHhhhcC------CCEEEEC-CccCCCCC-----cccc
Confidence 0 33446666666 5675443 2333 45566788 8999886 44432211 1122
Q ss_pred hhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechH
Q 025135 159 DEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRL 204 (257)
Q Consensus 159 ~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~ 204 (257)
+..+..+..+++..++||++-|||++++..++.+.| +|.|++-|+
T Consensus 135 ~~g~~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~G-a~gvAvi~a 179 (180)
T PF02581_consen 135 PLGLDGLREIARASPIPVYALGGITPENIPELREAG-ADGVAVISA 179 (180)
T ss_dssp TCHHHHHHHHHHHTSSCEEEESS--TTTHHHHHHTT--SEEEESHH
T ss_pred ccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcC-CCEEEEEee
Confidence 334566778888999999999999999999999887 999998876
No 148
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.81 E-value=0.0029 Score=54.27 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=57.7
Q ss_pred HHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHH-hCCcEEEeCCCCHHHHHHHHHcCCCcEE
Q 025135 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRS-YQGTFICSGGFTRELGIQALAEDGADLV 199 (257)
Q Consensus 121 ~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~~pvi~~G~it~~~a~~~l~~g~~D~V 199 (257)
....+.| +||+-++ |-+.+.... + . ..+.-+..++.+.+. ..+||++-|||+++++.++++.| ++.|
T Consensus 116 ~~A~~~g------aDYi~lg-pvf~T~tK~--~-~-~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~G-a~Gi 183 (211)
T PRK03512 116 DVALAAR------PSYIALG-HVFPTQTKQ--M-P-SAPQGLAQLARHVERLADYPTVAIGGISLERAPAVLATG-VGSI 183 (211)
T ss_pred HHHhhcC------CCEEEEC-CccCCCCCC--C-C-CCCCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcC-CCEE
Confidence 4455678 8999875 444322110 0 0 111223344555555 57999999999999999999988 9999
Q ss_pred EechHHhhCchHHHHHH
Q 025135 200 AYGRLFISNPDLVLRFK 216 (257)
Q Consensus 200 ~igR~~iadP~l~~k~~ 216 (257)
++-+++...+|+...++
T Consensus 184 Avisai~~~~d~~~~~~ 200 (211)
T PRK03512 184 AVVSAITQAADWRAATA 200 (211)
T ss_pred EEhhHhhCCCCHHHHHH
Confidence 99999998887765554
No 149
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.80 E-value=0.00016 Score=63.53 Aligned_cols=80 Identities=13% Similarity=0.054 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGA 196 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~ 196 (257)
.++|+.+++.| +.++|+..- +.+ +.+.++.+.+.+++||..+||++.++++++|+.| +
T Consensus 41 ~~~A~~~~~~G------a~~lHvVDL--------------g~~-n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aG-a 98 (253)
T TIGR02129 41 SYYAKLYKDDG------VKGCHVIML--------------GPN-NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEG-A 98 (253)
T ss_pred HHHHHHHHHcC------CCEEEEEEC--------------CCC-cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcC-C
Confidence 46889999999 999999863 122 4577788888899999999999669999999998 9
Q ss_pred cEEEechHHhhC----chHHHHHHcC
Q 025135 197 DLVAYGRLFISN----PDLVLRFKLN 218 (257)
Q Consensus 197 D~V~igR~~iad----P~l~~k~~~g 218 (257)
|-|.+|..++.| |++++++.+-
T Consensus 99 ~rVvIGS~av~~~~i~~~~~~~i~~~ 124 (253)
T TIGR02129 99 SHVIVTSWLFTKGKFDLKRLKEIVSL 124 (253)
T ss_pred CEEEECcHHHhCCCCCHHHHHHHHHH
Confidence 999999999998 8899888753
No 150
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.79 E-value=0.0006 Score=57.89 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=87.7
Q ss_pred CCCCCCChhhHHHHHHHHH---------------HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhH
Q 025135 10 PNPQALQTSEIPEVIDQYR---------------QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENR 74 (257)
Q Consensus 10 ~~p~~lt~~eI~~ii~~f~---------------~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR 74 (257)
..||.+|.++..++.+... .....|.+.|.|+|+||+..
T Consensus 30 ~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e-------------------------- 83 (203)
T cd00405 30 KSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE-------------------------- 83 (203)
T ss_pred CCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC--------------------------
Confidence 3577888877777766432 22256778999999998543
Q ss_pred hhHHHHHHHHHHHHhCCCeEE--EEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCC
Q 025135 75 CRFLMQLVREVIVAIGADRVG--VRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTES 152 (257)
Q Consensus 75 ~r~~~eiv~aiR~~vg~~~v~--vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~ 152 (257)
..+.++.+|+..+.. +. +.++.. .+ ..+.+ ....+ +||+-+....-...
T Consensus 84 ---~~~~~~~l~~~~~~~-~i~~i~~~~~-----------~~--~~~~~-~~~~~------aD~il~dt~~~~~~----- 134 (203)
T cd00405 84 ---SPEYCAQLRARLGLP-VIKAIRVKDE-----------ED--LEKAA-AYAGE------VDAILLDSKSGGGG----- 134 (203)
T ss_pred ---CHHHHHHHHhhcCCc-EEEEEecCCh-----------hh--HHHhh-hcccc------CCEEEEcCCCCCCC-----
Confidence 013456677766643 33 444421 11 11112 22345 78875432111000
Q ss_pred CCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchH
Q 025135 153 GRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDL 211 (257)
Q Consensus 153 ~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l 211 (257)
++. +....+..++.++ .+.|+++.||+|++...++++.+.+++|.+.+++...|-.
T Consensus 135 Gg~-g~~~~~~~l~~~~--~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 135 GGT-GKTFDWSLLRGLA--SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CCC-cceEChHHhhccc--cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 001 1223344545454 5789999999999999999999889999999998877643
No 151
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.79 E-value=0.00036 Score=64.53 Aligned_cols=100 Identities=14% Similarity=0.007 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCC
Q 025135 76 RFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRP 155 (257)
Q Consensus 76 r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~ 155 (257)
.+.-+.|+.||+.++. +|.+| .. .+.+ -++.+.+.| +|.|.++.....+..
T Consensus 222 ~~~w~~i~~ir~~~~~-pviiK-gV----------~~~e----da~~a~~~G------~d~I~VSnhGGrqld------- 272 (361)
T cd04736 222 SFNWQDLRWLRDLWPH-KLLVK-GI----------VTAE----DAKRCIELG------ADGVILSNHGGRQLD------- 272 (361)
T ss_pred cCCHHHHHHHHHhCCC-CEEEe-cC----------CCHH----HHHHHHHCC------cCEEEECCCCcCCCc-------
Confidence 3566789999999864 77776 22 1233 356677899 898888754333221
Q ss_pred CCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 156 GTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 156 ~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
..+.....+.++++.+++|||+.||| +..++.++|.-| +|+|++||+++
T Consensus 273 -~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLG-A~aV~iGr~~l 322 (361)
T cd04736 273 -DAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALG-ANAVLLGRATL 322 (361)
T ss_pred -CCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHH
Confidence 11123456777888889999999999 899999999998 99999999999
No 152
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.79 E-value=9.2e-05 Score=64.30 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG 195 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~ 195 (257)
.++++.+++.| ++.+|+..-.- . ....+.+...++++.+.+.+||.+.||+ +.++++++++.|
T Consensus 32 ~~~a~~~~~~g------~~~l~ivDLda--a-------~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~G- 95 (229)
T PF00977_consen 32 VEVAKAFNEQG------ADELHIVDLDA--A-------KEGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAG- 95 (229)
T ss_dssp HHHHHHHHHTT-------SEEEEEEHHH--H-------CCTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-
T ss_pred HHHHHHHHHcC------CCEEEEEEccC--c-------ccCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhC-
Confidence 45788888999 88898875211 0 0134456677888999999999999999 899999999998
Q ss_pred CcEEEechHHhhCchHHHHHHcC
Q 025135 196 ADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 196 ~D~V~igR~~iadP~l~~k~~~g 218 (257)
+|-|.+|...+.||++++++.+.
T Consensus 96 a~~Vvigt~~~~~~~~l~~~~~~ 118 (229)
T PF00977_consen 96 ADRVVIGTEALEDPELLEELAER 118 (229)
T ss_dssp -SEEEESHHHHHCCHHHHHHHHH
T ss_pred CCEEEeChHHhhchhHHHHHHHH
Confidence 99999999999999999998763
No 153
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.79 E-value=0.001 Score=57.63 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC---CHHH----
Q 025135 114 GLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF---TREL---- 186 (257)
Q Consensus 114 ~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i---t~~~---- 186 (257)
++....++...+.| .|||-+..+ . ..+.++++.+..++||++.||+ |+++
T Consensus 143 ~~i~~~~~~a~~~G------aD~Ik~~~~--------------~---~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~ 199 (235)
T cd00958 143 DLIAYAARIGAELG------ADIVKTKYT--------------G---DAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKM 199 (235)
T ss_pred HHHHHHHHHHHHHC------CCEEEecCC--------------C---CHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHH
Confidence 33344477778889 899976311 1 1345677778888998887875 4544
Q ss_pred HHHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 187 GIQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 187 a~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
+.++++.| ++.|++||.++..||....+
T Consensus 200 ~~~~~~~G-a~gv~vg~~i~~~~dp~~~~ 227 (235)
T cd00958 200 VYDAMEAG-AAGVAVGRNIFQRPDPVAML 227 (235)
T ss_pred HHHHHHcC-CcEEEechhhhcCCCHHHHH
Confidence 77788877 99999999999988854443
No 154
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.78 E-value=0.0016 Score=55.76 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=56.7
Q ss_pred HHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCC-CHHHHHHHHHcCCC
Q 025135 120 IQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGF-TRELGIQALAEDGA 196 (257)
Q Consensus 120 ~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~ 196 (257)
++.+.+.| ++++-++....... ... ...+..+++.+ ++||++.||+ +++++.++++.| +
T Consensus 134 ~~~~~~~g------~~~i~~t~~~~~~~----------~~~-~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G-a 195 (217)
T cd00331 134 LERALALG------AKIIGINNRDLKTF----------EVD-LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG-A 195 (217)
T ss_pred HHHHHHcC------CCEEEEeCCCcccc----------CcC-HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC-C
Confidence 44566678 78887663221111 111 25557777774 5799999999 899999999997 9
Q ss_pred cEEEechHHhhCchHHHHHH
Q 025135 197 DLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 197 D~V~igR~~iadP~l~~k~~ 216 (257)
|.|.+|++++..++..+.++
T Consensus 196 ~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 196 DAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred CEEEECHHHcCCCCHHHHHH
Confidence 99999999998887665554
No 155
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.78 E-value=0.0025 Score=56.37 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 160 EEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 160 ~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
.....++.+|+..+.||++.||+ |++++.++++.| +|.|.+|.+++.
T Consensus 185 ~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~G-ADgvVvGSaiv~ 232 (256)
T TIGR00262 185 ALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAG-ADGVIVGSAIVK 232 (256)
T ss_pred hHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence 34567888999888999999999 799999999887 999999999874
No 156
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.77 E-value=0.00016 Score=62.85 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG 195 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~ 195 (257)
.+.++.+.+.| ..++|+..-. +...+.+.+...++++.+.+++||=++||| +.+.++.+|+.|
T Consensus 34 ~~~a~~~~~~G------a~~lHlVDLd---------gA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G- 97 (241)
T COG0106 34 LEVAKKWSDQG------AEWLHLVDLD---------GAKAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAG- 97 (241)
T ss_pred HHHHHHHHHcC------CcEEEEeecc---------ccccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCC-
Confidence 46788889999 8999987521 111133455678889999999999999999 899999999987
Q ss_pred CcEEEechHHhhCchHHHHHHcCC
Q 025135 196 ADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 196 ~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
++-|.+|...+.||+|++++.+--
T Consensus 98 ~~rViiGt~av~~p~~v~~~~~~~ 121 (241)
T COG0106 98 VARVIIGTAAVKNPDLVKELCEEY 121 (241)
T ss_pred CCEEEEecceecCHHHHHHHHHHc
Confidence 999999999999999999987643
No 157
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.77 E-value=0.00026 Score=65.52 Aligned_cols=109 Identities=21% Similarity=0.221 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCC---
Q 025135 76 RFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTES--- 152 (257)
Q Consensus 76 r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~--- 152 (257)
.=+.+.|+.+|+..+..||+||+... ...++ ++..+.++| +|+|++.... -..+..+.
T Consensus 188 edl~~~I~~Lr~~~~~~pVgvKl~~~---------~~~~~---~~~~~~~ag------~D~ItIDG~~-GGTGAap~~~~ 248 (368)
T PF01645_consen 188 EDLAQLIEELRELNPGKPVGVKLVAG---------RGVED---IAAGAAKAG------ADFITIDGAE-GGTGAAPLTSM 248 (368)
T ss_dssp HHHHHHHHHHHHH-TTSEEEEEEE-S---------TTHHH---HHHHHHHTT-------SEEEEE-TT----SSEECCHH
T ss_pred HHHHHHHHHHHhhCCCCcEEEEECCC---------CcHHH---HHHhhhhcc------CCEEEEeCCC-CCCCCCchhHH
Confidence 44778899999988656999999864 22332 222367788 9999997421 11110000
Q ss_pred CCCCCchhHHHHHHHHHHHh-------CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 153 GRPGTEDEEAQLLRTWRRSY-------QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 153 ~~~~~~~~~~~~~~~ir~~~-------~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
... +-| +...+..+.+.+ .+.++++|++ |+.++.++|.=| +|.|.|||+++
T Consensus 249 d~~-GlP-~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLG-AD~v~igt~~l 307 (368)
T PF01645_consen 249 DHV-GLP-TEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALG-ADAVYIGTAAL 307 (368)
T ss_dssp HHC-----HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT--SEEE-SHHHH
T ss_pred hhC-CCc-HHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcC-CCeeEecchhh
Confidence 000 111 222333333322 3679999999 999999999998 99999999987
No 158
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.77 E-value=0.0018 Score=57.99 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=77.0
Q ss_pred chhhHhhHHHHHHHHHHHHhCCCeEE---EEEccCCCCCCC-C-CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCc
Q 025135 70 SIENRCRFLMQLVREVIVAIGADRVG---VRMSPAIDHLDA-T-DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRY 144 (257)
Q Consensus 70 s~enR~r~~~eiv~aiR~~vg~~~v~---vrls~~~~~~~~-~-~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~ 144 (257)
+.+...++..++++-.++. |- +|. ..+...++..+. + ...+.+++.+++ ++.| +||+-+.-+..
T Consensus 109 ~~~eni~~t~~v~~~a~~~-gv-~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~---~~tg------~DyLAvaiG~~ 177 (281)
T PRK06806 109 PLEENIQKTKEIVELAKQY-GA-TVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFA---EETD------VDALAVAIGNA 177 (281)
T ss_pred CHHHHHHHHHHHHHHHHHc-CC-eEEEEeeeECCccCCcccccceeCCHHHHHHHH---HhhC------CCEEEEccCCC
Confidence 3466678888888777764 21 232 244422211110 0 012344443333 3568 89998754433
Q ss_pred ccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeC--CCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 145 TAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG--GFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G--~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
.... . ..+....+.++++++.+++|+++-| |++.++..++++.| ++-|.+.+.+..+|
T Consensus 178 hg~~---~---~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G-~~kinv~T~i~~a~ 237 (281)
T PRK06806 178 HGMY---N---GDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHG-IRKINVATATFNSV 237 (281)
T ss_pred CCCC---C---CCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEhHHHHHHH
Confidence 3221 1 0122345678889999999999989 89999999999998 99999999999854
No 159
>PLN02591 tryptophan synthase
Probab=97.77 E-value=0.0075 Score=53.16 Aligned_cols=162 Identities=18% Similarity=0.124 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhH----------hhHHHHHHHHHHHHhCCCeE
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENR----------CRFLMQLVREVIVAIGADRV 94 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR----------~r~~~eiv~aiR~~vg~~~v 94 (257)
+.+.+.++...++|.|.|||-. |.++---| |-.+.+- .+-++++++.+|+... .|+
T Consensus 16 e~~~~~~~~l~~~Gad~iElGi-----------PfSDP~aD--GpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~-~p~ 81 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGV-----------PYSDPLAD--GPVIQAAATRALEKGTTLDSVISMLKEVAPQLS-CPI 81 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCccc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC-CCE
Confidence 4556666677789999999854 33322222 2222211 2357888888886533 253
Q ss_pred EEE--EccC-----CC---------CCCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCccc----------C
Q 025135 95 GVR--MSPA-----ID---------HLDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTA----------Y 147 (257)
Q Consensus 95 ~vr--ls~~-----~~---------~~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~----------~ 147 (257)
.+- .|+. +. .++. -...+.++..++.+.+.+.| ++.|.+..|.... .
T Consensus 82 ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~g------l~~I~lv~Ptt~~~ri~~ia~~~~ 155 (250)
T PLN02591 82 VLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNG------IELVLLTTPTTPTERMKAIAEASE 155 (250)
T ss_pred EEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcC------CeEEEEeCCCCCHHHHHHHHHhCC
Confidence 221 1110 00 1110 12356788888888889998 7777666543321 0
Q ss_pred CCcC-------CCCC-CCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 148 GQTE-------SGRP-GTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 148 ~~~~-------~~~~-~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
++.+ .|.. .........++.+|+..+.||+++-|+ +++++.++++.| +|.|.+|.+++.
T Consensus 156 gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~G-ADGvIVGSalVk 223 (250)
T PLN02591 156 GFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWG-ADGVIVGSAMVK 223 (250)
T ss_pred CcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcC-CCEEEECHHHHH
Confidence 1100 0111 112233456788999889999998888 799999988877 999999999874
No 160
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.76 E-value=0.00021 Score=63.14 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+.+.| ++.+++..-.-... ....+...++.+.+...+||++.||+ +.+++++++..|
T Consensus 32 p~~~a~~~~~~g------~~~l~i~Dl~~~~~---------~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G 96 (258)
T PRK01033 32 PINAVRIFNEKE------VDELIVLDIDASKR---------GSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLG 96 (258)
T ss_pred HHHHHHHHHHcC------CCEEEEEECCCCcC---------CCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCC
Confidence 356899999999 88888775221110 12334567788888888999999999 899999999876
Q ss_pred CCcEEEechHHhhCchHHHHHHc
Q 025135 195 GADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 195 ~~D~V~igR~~iadP~l~~k~~~ 217 (257)
++.|.+|..++.+|+++.++.+
T Consensus 97 -~~~vvigs~~~~~~~~~~~~~~ 118 (258)
T PRK01033 97 -VEKVSINTAALEDPDLITEAAE 118 (258)
T ss_pred -CCEEEEChHHhcCHHHHHHHHH
Confidence 9999999999999999998865
No 161
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.75 E-value=0.003 Score=55.93 Aligned_cols=161 Identities=19% Similarity=0.125 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhh----------HhhHHHHHHHHHHHHhCCCeE
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIEN----------RCRFLMQLVREVIVAIGADRV 94 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~en----------R~r~~~eiv~aiR~~vg~~~v 94 (257)
+.+.+.++...+.|.|.|||-. |.++---| |-.+.. ..+-++++++++|+.-.+.|+
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGi-----------PfSDP~aD--GpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~ 92 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGI-----------PFSDPVAD--GPVIQAASLRALAAGVTLADVFELVREIREKDPTIPI 92 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCccc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 4566677777889999999854 33333333 222221 133468888888854322254
Q ss_pred EEEE--ccC-----C---------CCCCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc----------cC
Q 025135 95 GVRM--SPA-----I---------DHLDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT----------AY 147 (257)
Q Consensus 95 ~vrl--s~~-----~---------~~~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~----------~~ 147 (257)
.+-. ++. + +.++. -...+.++...+.+.+.+.| ++.|.+..|... ..
T Consensus 93 vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~g------l~~I~lvap~t~~eri~~i~~~s~ 166 (258)
T PRK13111 93 VLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHG------LDLIFLVAPTTTDERLKKIASHAS 166 (258)
T ss_pred EEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcC------CcEEEEeCCCCCHHHHHHHHHhCC
Confidence 3222 210 0 00110 01346777888888888888 676664443321 01
Q ss_pred CCcC-------CCCC-CCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 148 GQTE-------SGRP-GTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 148 ~~~~-------~~~~-~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
++.+ .|.. .......+.++.+|+..++||++++|+ +++++.++++ . +|.|.+|.+++
T Consensus 167 gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~-~-ADGviVGSaiv 232 (258)
T PRK13111 167 GFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA-V-ADGVIVGSALV 232 (258)
T ss_pred CcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH-h-CCEEEEcHHHH
Confidence 1100 1110 011233457788999889999999999 8999999885 4 99999999987
No 162
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.75 E-value=0.00088 Score=57.53 Aligned_cols=130 Identities=16% Similarity=0.085 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDAT 108 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~ 108 (257)
..++.|.+.|+|.|++..-.|+|.+ ++.+.+.+-+.+|+++++.-++-+-+-. .+
T Consensus 74 ~E~~~Av~~GAdEiDvv~n~g~l~~-------------------g~~~~v~~ei~~i~~~~~g~~lKvIlE~--~~---- 128 (211)
T TIGR00126 74 YETKEAIKYGADEVDMVINIGALKD-------------------GNEEVVYDDIRAVVEACAGVLLKVIIET--GL---- 128 (211)
T ss_pred HHHHHHHHcCCCEEEeecchHhhhC-------------------CcHHHHHHHHHHHHHHcCCCeEEEEEec--CC----
Confidence 3446688899999999876655432 2235667778888888863244442321 11
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCC-CHH
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGF-TRE 185 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~i-t~~ 185 (257)
.+.++....++...++| +|||-.+.+ |... ......++.+++.+ +++|-++||+ |.+
T Consensus 129 --L~~~ei~~a~~ia~eaG------ADfvKTsTG-f~~~-----------gat~~dv~~m~~~v~~~v~IKaaGGirt~~ 188 (211)
T TIGR00126 129 --LTDEEIRKACEICIDAG------ADFVKTSTG-FGAG-----------GATVEDVRLMRNTVGDTIGVKASGGVRTAE 188 (211)
T ss_pred --CCHHHHHHHHHHHHHhC------CCEEEeCCC-CCCC-----------CCCHHHHHHHHHHhccCCeEEEeCCCCCHH
Confidence 23355667888899999 999987653 2111 11123334455554 4789999999 899
Q ss_pred HHHHHHHcCCCcEEEechH
Q 025135 186 LGIQALAEDGADLVAYGRL 204 (257)
Q Consensus 186 ~a~~~l~~g~~D~V~igR~ 204 (257)
++.++++.| +|-++...+
T Consensus 189 ~a~~~i~aG-a~riGts~~ 206 (211)
T TIGR00126 189 DAIAMIEAG-ASRIGASAG 206 (211)
T ss_pred HHHHHHHHh-hHHhCcchH
Confidence 999999998 887776543
No 163
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.74 E-value=0.00097 Score=58.16 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g 194 (257)
..++++.+++.| +..+-++.-...+. ........++.+.+..++||++.||+ ++++..++++.|
T Consensus 150 ~~~~~~~~~~~g------~~~ii~tdi~~dGt---------~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G 214 (234)
T PRK13587 150 LFSFVRQLSDIP------LGGIIYTDIAKDGK---------MSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLN 214 (234)
T ss_pred HHHHHHHHHHcC------CCEEEEecccCcCC---------CCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 356888899988 55443332211111 11233456777888889999999999 899999999875
Q ss_pred CCcEEEechHHhh
Q 025135 195 GADLVAYGRLFIS 207 (257)
Q Consensus 195 ~~D~V~igR~~ia 207 (257)
+|.|.+|+.+..
T Consensus 215 -~~~vivG~a~~~ 226 (234)
T PRK13587 215 -VHAAIIGKAAHQ 226 (234)
T ss_pred -CCEEEEhHHHHh
Confidence 999999999986
No 164
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.74 E-value=0.0037 Score=55.50 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhh---H-------hhHHHHHHHHHHHHhCCCeE
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIEN---R-------CRFLMQLVREVIVAIGADRV 94 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~en---R-------~r~~~eiv~aiR~~vg~~~v 94 (257)
+.+.+.++...++|.|.|||-- |.++---| |-.+.+ | .+-++++++++|+... .|+
T Consensus 29 ~~~~~~~~~l~~~Gad~iElGi-----------PfSDP~aD--GpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~-~p~ 94 (263)
T CHL00200 29 VITKKALKILDKKGADIIELGI-----------PYSDPLAD--GPIIQEASNRALKQGINLNKILSILSEVNGEIK-API 94 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCCcc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC-CCE
Confidence 4566677777889999999854 33332223 222221 1 2357888999986532 253
Q ss_pred EEE--EccC-----CCC---------CCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc----------cC
Q 025135 95 GVR--MSPA-----IDH---------LDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT----------AY 147 (257)
Q Consensus 95 ~vr--ls~~-----~~~---------~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~----------~~ 147 (257)
.+- .|+. +.| ++. -...+.++..++.+.+.+.| ++.+-+..|... ..
T Consensus 95 vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~g------i~~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 95 VIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYN------IELILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred EEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcC------CCEEEEECCCCCHHHHHHHHHhCC
Confidence 221 1110 000 000 12346677788888888888 666655544321 00
Q ss_pred CCc----CCC--CCC--CchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 148 GQT----ESG--RPG--TEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 148 ~~~----~~~--~~~--~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
++. ..| +.. ......+.++.+|+..+.||.+..|+ +++++.++.+.| +|.|.+|-+++
T Consensus 169 gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~G-ADGvVVGSalv 235 (263)
T CHL00200 169 GCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWN-INGIVIGSACV 235 (263)
T ss_pred CcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcC-CCEEEECHHHH
Confidence 000 001 010 11223456778999889999999999 799999988877 99999999995
No 165
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=97.73 E-value=0.00037 Score=60.26 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCC
Q 025135 79 MQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGT 157 (257)
Q Consensus 79 ~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~ 157 (257)
.+.|++||+++|++ .+.+..+. . .+.+++.++++.|++.+ +.|++ +|-
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~--~-------~~~~~a~~~~~~l~~~~------i~~iE--eP~-------------- 129 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANG--A-------WTPKEAIRLIRALEKYG------LAWIE--EPC-------------- 129 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCC--C-------CCHHHHHHHHHHhhhcC------CCeEE--CCC--------------
Confidence 78899999999975 45555542 2 35788999999999988 88887 552
Q ss_pred chhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 025135 158 EDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 158 ~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~i 201 (257)
.+......+.+++..++||.+...+ ++++..++++.+.+|+|.+
T Consensus 130 ~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 130 APDDLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred CccCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEec
Confidence 1222355677888889999886666 7999989999999999976
No 166
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.73 E-value=0.00038 Score=60.06 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCC-CHHHHH
Q 025135 111 DPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGF-TRELGI 188 (257)
Q Consensus 111 ~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~i-t~~~a~ 188 (257)
...+++...|.+.+..| .++-|++.+ + .....+.++.+++.+ +.|++..||| ++++++
T Consensus 132 ~~~e~~~ayA~aae~~g----~~ivyLe~S-G---------------~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~ 191 (219)
T cd02812 132 LKPEDAAAYALAAEYLG----MPIVYLEYS-G---------------AYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAK 191 (219)
T ss_pred CCHHHHHHHHHHHHHcC----CeEEEeCCC-C---------------CcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHH
Confidence 45677777888888877 123344311 1 112245678899988 8999999999 999999
Q ss_pred HHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 189 QALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 189 ~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
++++.| +|.|.+|..+..||+++.++.
T Consensus 192 ~l~~aG-AD~VVVGsai~~~p~~~~~~v 218 (219)
T cd02812 192 EMAEAG-ADTIVVGNIVEEDPNAALETV 218 (219)
T ss_pred HHHHcC-CCEEEECchhhCCHHHHHHHh
Confidence 999887 999999999999999998875
No 167
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.71 E-value=0.0019 Score=55.90 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=79.5
Q ss_pred HHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHH
Q 025135 35 IQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLG 114 (257)
Q Consensus 35 ~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~ 114 (257)
.++|.|-|-+|.=. +.-+.++++.||+. |. ..|+=+++. .+.+
T Consensus 78 ~~~gad~i~~H~Ea--------------------------~~~~~~~l~~ik~~-g~-k~GlalnP~---------Tp~~ 120 (220)
T PRK08883 78 AKAGASMITFHVEA--------------------------SEHVDRTLQLIKEH-GC-QAGVVLNPA---------TPLH 120 (220)
T ss_pred HHhCCCEEEEcccC--------------------------cccHHHHHHHHHHc-CC-cEEEEeCCC---------CCHH
Confidence 45899999999642 11256778888874 43 467778874 3455
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-----CCcEEEeCCCCHHHHHH
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-----QGTFICSGGFTRELGIQ 189 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~~G~it~~~a~~ 189 (257)
....++ ..... +-++.+ +|.+.... ..+...+.++++++.. +.||.+-||++++.+.+
T Consensus 121 ~i~~~l---~~~D~-----vlvMtV-~PGfgGq~--------fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~ 183 (220)
T PRK08883 121 HLEYIM---DKVDL-----ILLMSV-NPGFGGQS--------FIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIRE 183 (220)
T ss_pred HHHHHH---HhCCe-----EEEEEe-cCCCCCce--------ecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHH
Confidence 444443 33221 333333 45443322 1222334455565554 37788889999999999
Q ss_pred HHHcCCCcEEEechHHhhCchHHHH
Q 025135 190 ALAEDGADLVAYGRLFISNPDLVLR 214 (257)
Q Consensus 190 ~l~~g~~D~V~igR~~iadP~l~~k 214 (257)
+++.| +|.+.+|+++...++..+.
T Consensus 184 l~~aG-Ad~vVvGSaIf~~~d~~~~ 207 (220)
T PRK08883 184 IAEAG-ADMFVAGSAIFGQPDYKAV 207 (220)
T ss_pred HHHcC-CCEEEEeHHHhCCCCHHHH
Confidence 99998 9999999999877665433
No 168
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.001 Score=56.84 Aligned_cols=128 Identities=20% Similarity=0.155 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH--hCCCeEEEEEccCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA--IGADRVGVRMSPAIDHLD 106 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~--vg~~~v~vrls~~~~~~~ 106 (257)
--|+.|.++|.|.+-+-|+- | ..-|.++++.+ .|. .+.+-|-..
T Consensus 71 ~e~~ma~~aGAd~~tV~g~A---------~-------------------~~TI~~~i~~A~~~~~-~v~iDl~~~----- 116 (217)
T COG0269 71 IEARMAFEAGADWVTVLGAA---------D-------------------DATIKKAIKVAKEYGK-EVQIDLIGV----- 116 (217)
T ss_pred HHHHHHHHcCCCEEEEEecC---------C-------------------HHHHHHHHHHHHHcCC-eEEEEeecC-----
Confidence 34677889999999987754 1 12233344433 232 355544321
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC--CcEEEeCCCCH
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ--GTFICSGGFTR 184 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~G~it~ 184 (257)
.+. ..-++.|+++| ++++.+|.+.-.+.. +..+.+..+..+|+..+ ..|.+.||+++
T Consensus 117 ----~~~---~~~~~~l~~~g------vd~~~~H~g~D~q~~--------G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~ 175 (217)
T COG0269 117 ----WDP---EQRAKWLKELG------VDQVILHRGRDAQAA--------GKSWGEDDLEKIKKLSDLGAKVAVAGGITP 175 (217)
T ss_pred ----CCH---HHHHHHHHHhC------CCEEEEEecccHhhc--------CCCccHHHHHHHHHhhccCceEEEecCCCH
Confidence 122 34567888899 888888765332211 12222456777888776 57888999999
Q ss_pred HHHHHHHHcCCCcEEEechHHhhCchHH
Q 025135 185 ELGIQALAEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~igR~~iadP~l~ 212 (257)
++...++..| +|.|.+||+...-.|-.
T Consensus 176 ~~i~~~~~~~-~~ivIvGraIt~a~dp~ 202 (217)
T COG0269 176 EDIPLFKGIG-ADIVIVGRAITGAKDPA 202 (217)
T ss_pred HHHHHHhcCC-CCEEEECchhcCCCCHH
Confidence 9999999988 99999999999766543
No 169
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.69 E-value=0.00032 Score=61.45 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG 195 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~ 195 (257)
.++++.+.+.| ++++|+..-.-. ....+.+...++.|.+.+ .||.+.||+ +.++++++++.|
T Consensus 33 ~~~A~~~~~~g------a~~lhivDLd~a---------~~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~G- 95 (241)
T PRK14114 33 AELVEKLIEEG------FTLIHVVDLSKA---------IENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLG- 95 (241)
T ss_pred HHHHHHHHHCC------CCEEEEEECCCc---------ccCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCC-
Confidence 56788899999 889988752110 012334556777787776 799999999 899999999987
Q ss_pred CcEEEechHHhhCchHHHHHHc
Q 025135 196 ADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 196 ~D~V~igR~~iadP~l~~k~~~ 217 (257)
+|-|.+|...+.||++++++.+
T Consensus 96 a~rvvigT~a~~~p~~l~~~~~ 117 (241)
T PRK14114 96 YRRQIVSSKVLEDPSFLKFLKE 117 (241)
T ss_pred CCEEEECchhhCCHHHHHHHHH
Confidence 9999999999999999999953
No 170
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.66 E-value=0.0004 Score=59.99 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=48.6
Q ss_pred HHHHHHHHHHh-CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 162 AQLLRTWRRSY-QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 162 ~~~~~~ir~~~-~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
.+.++.+++.+ +.|++.+||| ++++++++++.| +|.|.+|..+..||+++.+..
T Consensus 167 ~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVGs~~~~dp~~~~~~v 222 (223)
T TIGR01768 167 PELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG-ADTIVTGNVIEEDVDKALETI 222 (223)
T ss_pred HHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC-CCEEEECcHHhhCHHHHHHhh
Confidence 46678899988 8999999999 899999999887 999999999999999998764
No 171
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.65 E-value=0.0019 Score=54.94 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
+..++.|.+.|+|.|+++.--|++.+. ......+-+.+|++++..-++.+-+-. ..
T Consensus 72 ~~eve~A~~~GAdevdvv~~~g~~~~~-------------------~~~~~~~ei~~v~~~~~g~~lkvI~e~--~~--- 127 (203)
T cd00959 72 VAEAREAIADGADEIDMVINIGALKSG-------------------DYEAVYEEIAAVVEACGGAPLKVILET--GL--- 127 (203)
T ss_pred HHHHHHHHHcCCCEEEEeecHHHHhCC-------------------CHHHHHHHHHHHHHhcCCCeEEEEEec--CC---
Confidence 344667888999999998766544321 234566668888888763244442221 11
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCC-CH
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGF-TR 184 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~i-t~ 184 (257)
.+.++....++...++| +|||..+.+ +... ......++.+++.+ ++||-++||+ |.
T Consensus 128 ---l~~~~i~~a~ria~e~G------aD~IKTsTG-~~~~-----------~at~~~v~~~~~~~~~~v~ik~aGGikt~ 186 (203)
T cd00959 128 ---LTDEEIIKACEIAIEAG------ADFIKTSTG-FGPG-----------GATVEDVKLMKEAVGGRVGVKAAGGIRTL 186 (203)
T ss_pred ---CCHHHHHHHHHHHHHhC------CCEEEcCCC-CCCC-----------CCCHHHHHHHHHHhCCCceEEEeCCCCCH
Confidence 23466777888899999 999987643 2111 11122233344443 5789999999 89
Q ss_pred HHHHHHHHcCCCcEEE
Q 025135 185 ELGIQALAEDGADLVA 200 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~ 200 (257)
+++.++++.| +|-++
T Consensus 187 ~~~l~~~~~g-~~riG 201 (203)
T cd00959 187 EDALAMIEAG-ATRIG 201 (203)
T ss_pred HHHHHHHHhC-hhhcc
Confidence 9999999997 77655
No 172
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.63 E-value=0.006 Score=51.18 Aligned_cols=53 Identities=26% Similarity=0.231 Sum_probs=42.4
Q ss_pred HHHHHHHHHHh-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 162 AQLLRTWRRSY-QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 162 ~~~~~~ir~~~-~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
...++.+++.. ++||++.||++++.+.++++.| +|+|++++.+....|-...+
T Consensus 140 ~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G-~~gva~~~~i~~~~dp~~~~ 193 (196)
T TIGR00693 140 VELLREIAATSIDIPIVAIGGITLENAAEVLAAG-ADGVAVVSAIMQAADPKAAA 193 (196)
T ss_pred HHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEhHHhhCCCCHHHHH
Confidence 35566676665 4899999999999999999886 99999999999776644433
No 173
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.60 E-value=0.00047 Score=60.94 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDG 195 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~ 195 (257)
-.++|+.+++.| +.++|+..-. . ..+.+...++.|++ +++||-++|||+.++++++|+.|
T Consensus 45 P~~~A~~~~~~G------a~~lHvVDLd--g----------g~~~n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~G- 104 (262)
T PLN02446 45 AAEFAEMYKRDG------LTGGHVIMLG--A----------DDASLAAALEALRA-YPGGLQVGGGVNSENAMSYLDAG- 104 (262)
T ss_pred HHHHHHHHHHCC------CCEEEEEECC--C----------CCcccHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcC-
Confidence 367899999999 8999998631 1 12233456777888 88999999999669999999998
Q ss_pred CcEEEechHHhhC----chHHHHHHc
Q 025135 196 ADLVAYGRLFISN----PDLVLRFKL 217 (257)
Q Consensus 196 ~D~V~igR~~iad----P~l~~k~~~ 217 (257)
+|-|.+|..++.| |+|++++.+
T Consensus 105 a~rViigT~Av~~~~~~p~~v~~~~~ 130 (262)
T PLN02446 105 ASHVIVTSYVFRDGQIDLERLKDLVR 130 (262)
T ss_pred CCEEEEchHHHhCCCCCHHHHHHHHH
Confidence 9999999999999 999999876
No 174
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.59 E-value=0.0019 Score=62.15 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
.+.++...++|.|.|-+..+||.+ .-+.+.++.+|+..++-+|.+.--
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~------------------------~~vl~~i~~i~~~~p~~~vi~g~v-------- 277 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHS------------------------EGVLDRVREIKAKYPDVQIIAGNV-------- 277 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcc------------------------hhHHHHHHHHHhhCCCCCEEEecc--------
Confidence 567777888999999888777421 236678999998875446655211
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC-CCcCCCCCCCchhHHHHHHHHHHH---hCCcEEEeCCC-
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY-GQTESGRPGTEDEEAQLLRTWRRS---YQGTFICSGGF- 182 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ir~~---~~~pvi~~G~i- 182 (257)
.+.+. ++.|.++| +|+|.+.-+..... ..... ....+....+..+++. .++|||+-||+
T Consensus 278 ---~t~e~----a~~l~~aG------ad~i~vg~g~gs~~~~r~~~---~~g~p~~~~~~~~~~~~~~~~~~viadGGi~ 341 (486)
T PRK05567 278 ---ATAEA----ARALIEAG------ADAVKVGIGPGSICTTRIVA---GVGVPQITAIADAAEAAKKYGIPVIADGGIR 341 (486)
T ss_pred ---CCHHH----HHHHHHcC------CCEEEECCCCCccccceeec---CCCcCHHHHHHHHHHHhccCCCeEEEcCCCC
Confidence 23443 45677889 88887521110000 00000 0111223444444443 46899999999
Q ss_pred CHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 183 TRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
++.++.++|.-| ||+|++|..+..--
T Consensus 342 ~~~di~kAla~G-A~~v~~G~~~a~~~ 367 (486)
T PRK05567 342 YSGDIAKALAAG-ASAVMLGSMLAGTE 367 (486)
T ss_pred CHHHHHHHHHhC-CCEEEECccccccc
Confidence 999999999998 99999999887643
No 175
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.59 E-value=0.00059 Score=58.93 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG 195 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~ 195 (257)
.++++.+++.| ++.+++..-... ......+...++.+++.+++|+.+.|++ +.++++++++.|
T Consensus 31 ~~~a~~~~~~g------~~~l~v~dl~~~---------~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~G- 94 (230)
T TIGR00007 31 VEAAKKWEEEG------AERIHVVDLDGA---------KEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLG- 94 (230)
T ss_pred HHHHHHHHHcC------CCEEEEEeCCcc---------ccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-
Confidence 56888899999 777877532110 0012223467788888889999999999 899999999987
Q ss_pred CcEEEechHHhhCchHHHHHHcC
Q 025135 196 ADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 196 ~D~V~igR~~iadP~l~~k~~~g 218 (257)
+|.|.+|-.++.||+++.++.+.
T Consensus 95 a~~vvlgs~~l~d~~~~~~~~~~ 117 (230)
T TIGR00007 95 VDRVIIGTAAVENPDLVKELLKE 117 (230)
T ss_pred CCEEEEChHHhhCHHHHHHHHHH
Confidence 99999999999999999887754
No 176
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.58 E-value=0.0054 Score=55.27 Aligned_cols=140 Identities=15% Similarity=0.179 Sum_probs=87.7
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccC---CCCCCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPA---IDHLDA 107 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~---~~~~~~ 107 (257)
++.|.++||+.|.+-+.+ -+++...+...++++-.++. |- +|-..+..- ++...+
T Consensus 92 i~~ai~~GftSVm~d~S~--------------------l~~eEni~~t~~v~~~a~~~-gv-~vE~ElG~i~g~ed~~~g 149 (293)
T PRK07315 92 ALECIEVGYTSIMFDGSH--------------------LPVEENLKLAKEVVEKAHAK-GI-SVEAEVGTIGGEEDGIIG 149 (293)
T ss_pred HHHHHHcCCCEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEecCcccCcCccccC
Confidence 345666778877776655 13566677888877776652 21 333333311 111001
Q ss_pred CC-CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCC--CC
Q 025135 108 TD-SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGG--FT 183 (257)
Q Consensus 108 ~~-~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~--it 183 (257)
.. ..+.+++.++. +.| +|||-+.-+..++...+. .+....+.+++|++.+ ++|+++-|+ ++
T Consensus 150 ~s~~t~peea~~f~----~tg------vD~LAv~iG~vHG~y~t~-----~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~ 214 (293)
T PRK07315 150 KGELAPIEDAKAMV----ETG------IDFLAAGIGNIHGPYPEN-----WEGLDLDHLEKLTEAVPGFPIVLHGGSGIP 214 (293)
T ss_pred ccCCCCHHHHHHHH----HcC------CCEEeeccccccccCCCC-----CCcCCHHHHHHHHHhccCCCEEEECCCCCC
Confidence 11 13455554444 578 899987644443322110 1223456788999998 599888887 89
Q ss_pred HHHHHHHHHcCCCcEEEechHHhhC
Q 025135 184 RELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
.++..++++.| ++-|.+.+.+..+
T Consensus 215 ~e~~~~~i~~G-i~KiNv~T~i~~~ 238 (293)
T PRK07315 215 DDQIQEAIKLG-VAKVNVNTECQIA 238 (293)
T ss_pred HHHHHHHHHcC-CCEEEEccHHHHH
Confidence 99999999998 9999999999873
No 177
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.58 E-value=0.0021 Score=59.64 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=31.8
Q ss_pred CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 174 GTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 174 ~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
+|||+.||| +..++.++|.-| +|+|++|++|+.=
T Consensus 256 vpVIAdGGI~tg~di~kAlAlG-AdaV~iGt~~a~a 290 (369)
T TIGR01304 256 VHVIADGGIETSGDLVKAIACG-ADAVVLGSPLARA 290 (369)
T ss_pred ceEEEeCCCCCHHHHHHHHHcC-CCEeeeHHHHHhh
Confidence 899999999 999999999987 9999999999863
No 178
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.57 E-value=0.004 Score=56.75 Aligned_cols=128 Identities=18% Similarity=0.186 Sum_probs=80.2
Q ss_pred HHHHHHHc--CCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 30 AALNAIQA--GFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 30 AA~~a~~a--GfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
-++...++ |.|.|-|..+||| ...+.+.|+.||+.++. +..++=+.
T Consensus 111 r~~~L~~a~~~~d~iviD~AhGh------------------------s~~~i~~ik~ir~~~p~-~~viaGNV------- 158 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVANGY------------------------SEHFVEFVKLVREAFPE-HTIMAGNV------- 158 (343)
T ss_pred HHHHHHhcCCCCCEEEEECCCCc------------------------HHHHHHHHHHHHhhCCC-CeEEEecc-------
Confidence 33344455 5999999999975 35688999999999864 33343332
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCC--Cc-ccCCCcCCCCCCCchhHHHHHHHHHHH---hCCcEEEeCC
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQP--RY-TAYGQTESGRPGTEDEEAQLLRTWRRS---YQGTFICSGG 181 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~ir~~---~~~pvi~~G~ 181 (257)
.+.+ -++.|.++| +|.+-+.-+ .. .+.... + ...+....+..+.++ .++|||+-||
T Consensus 159 ---~T~e----~a~~Li~aG------AD~ikVgiGpGSicttR~~~--G---vg~pqltAv~~~a~aa~~~~v~VIaDGG 220 (343)
T TIGR01305 159 ---VTGE----MVEELILSG------ADIVKVGIGPGSVCTTRTKT--G---VGYPQLSAVIECADAAHGLKGHIISDGG 220 (343)
T ss_pred ---cCHH----HHHHHHHcC------CCEEEEcccCCCcccCceeC--C---CCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence 1333 355677899 777765411 11 000000 0 111123333444443 4679999999
Q ss_pred C-CHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 182 F-TRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 182 i-t~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
+ +.-+..++|.-| +|+||+|..|..-
T Consensus 221 Ir~~gDI~KALA~G-Ad~VMlG~llAG~ 247 (343)
T TIGR01305 221 CTCPGDVAKAFGAG-ADFVMLGGMFAGH 247 (343)
T ss_pred cCchhHHHHHHHcC-CCEEEECHhhhCc
Confidence 9 789999999988 9999999554443
No 179
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.55 E-value=0.00056 Score=59.41 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 160 EEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 160 ~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
.+...++++.+...+||++.||+ +.++++++++.| +|.|.+|+.++ ||++.+++.+
T Consensus 60 ~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G-~~~vivGtaa~-~~~~l~~~~~ 116 (228)
T PRK04128 60 KNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIG-VENVIIGTKAF-DLEFLEKVTS 116 (228)
T ss_pred chHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchhc-CHHHHHHHHH
Confidence 34567788888889999999999 899999999987 99999999999 9999999875
No 180
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.55 E-value=0.0025 Score=56.59 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC--eEEEEEccCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD--RVGVRMSPAI 102 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~--~v~vrls~~~ 102 (257)
+.+...++.|.+.|.|.|++..-.|.+ . + +-..+.+++|++.+... ++.+=..+.
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~~g~~--------------~-----~---~~~~~~~~~v~~~~~~~g~pl~vi~~~~- 149 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVNVGSE--------------T-----E---AEMLEDLGEVAEECEEWGMPLLAMMYPR- 149 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEecCCh--------------h-----H---HHHHHHHHHHHHHHHHcCCcEEEEEecC-
Confidence 334555667889999999986433210 0 1 12455566666655321 433311111
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
........+.+.....++...+.| +|||-.+ +. . ....++++.+..++||++.||+
T Consensus 150 -g~~~e~~~~~~~i~~a~~~a~e~G------AD~vKt~---~~-----------~---~~~~l~~~~~~~~ipV~a~GGi 205 (267)
T PRK07226 150 -GPGIKNEYDPEVVAHAARVAAELG------ADIVKTN---YT-----------G---DPESFREVVEGCPVPVVIAGGP 205 (267)
T ss_pred -CCccCCCccHHHHHHHHHHHHHHC------CCEEeeC---CC-----------C---CHHHHHHHHHhCCCCEEEEeCC
Confidence 010111123344555677788899 9999643 10 1 1245556666668999999999
Q ss_pred C---HHHHHHH----HHcCCCcEEEechHHhhCchHHH
Q 025135 183 T---RELGIQA----LAEDGADLVAYGRLFISNPDLVL 213 (257)
Q Consensus 183 t---~~~a~~~----l~~g~~D~V~igR~~iadP~l~~ 213 (257)
+ .+++.+. ++.| ++.+++||.++..|+-..
T Consensus 206 ~~~~~~~~l~~v~~~~~aG-A~Gis~gr~i~~~~~p~~ 242 (267)
T PRK07226 206 KTDTDREFLEMVRDAMEAG-AAGVAVGRNVFQHEDPEA 242 (267)
T ss_pred CCCCHHHHHHHHHHHHHcC-CcEEehhhhhhcCCCHHH
Confidence 5 3455444 5776 899999999999887433
No 181
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.0018 Score=55.79 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC-----
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID----- 103 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~----- 103 (257)
+-+++...+|+|-|-||.+- -.++ ++|+.+-+..|...|.+=|.....
T Consensus 87 eD~~~ll~aGADKVSINsaA-----------------------v~~p----~lI~~~a~~FGsQciVvaIDakr~~~g~~ 139 (256)
T COG0107 87 EDARKLLRAGADKVSINSAA-----------------------VKDP----ELITEAADRFGSQCIVVAIDAKRVPDGEN 139 (256)
T ss_pred HHHHHHHHcCCCeeeeChhH-----------------------hcCh----HHHHHHHHHhCCceEEEEEEeeeccCCCC
Confidence 34556778999999999764 1123 356667777888744333322111
Q ss_pred -----CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEE
Q 025135 104 -----HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFIC 178 (257)
Q Consensus 104 -----~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~ 178 (257)
|..++...+--++.++++..++.| ..-|-++. ++.-+. .......+++.+++.+++|||+
T Consensus 140 ~~~~v~~~gGr~~t~~d~~~Wa~~~e~~G------AGEIlLts--mD~DGt-------k~GyDl~l~~~v~~~v~iPvIA 204 (256)
T COG0107 140 GWYEVFTHGGREDTGLDAVEWAKEVEELG------AGEILLTS--MDRDGT-------KAGYDLELTRAVREAVNIPVIA 204 (256)
T ss_pred CcEEEEecCCCcCCCcCHHHHHHHHHHcC------CceEEEee--eccccc-------ccCcCHHHHHHHHHhCCCCEEe
Confidence 111222333345788999999999 55444332 111110 1123357888999999999999
Q ss_pred eCCC-CHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 179 SGGF-TRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 179 ~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
+||- +++...+++.+|.+|.+..+-=|--.-
T Consensus 205 SGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~ 236 (256)
T COG0107 205 SGGAGKPEHFVEAFTEGKADAALAASIFHFGE 236 (256)
T ss_pred cCCCCcHHHHHHHHHhcCccHHHhhhhhhcCc
Confidence 9999 999999999999999987776665443
No 182
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.54 E-value=0.0041 Score=54.45 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcC-------CCEEE--ecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe-EE
Q 025135 26 QYRQAALNAIQAG-------FDGIE--IHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR-VG 95 (257)
Q Consensus 26 ~f~~AA~~a~~aG-------fDgVE--Ih~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~-v~ 95 (257)
+=++.|+.|++++ -|.|. |+.---|| -|. ..|.+++.+.-+.+.+ |.
T Consensus 85 EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~L-----lPD------------------~~etl~Aae~Lv~eGF~Vl 141 (267)
T CHL00162 85 EAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYL-----LPD------------------PIGTLKAAEFLVKKGFTVL 141 (267)
T ss_pred HHHHHHHHHHHHhccccccCCCeEEEEEeCCCccc-----CCC------------------hHHHHHHHHHHHHCCCEEe
Confidence 4567788888875 67764 45444333 232 5688888888886643 33
Q ss_pred EEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCc
Q 025135 96 VRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGT 175 (257)
Q Consensus 96 vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~p 175 (257)
-=++. + ..+|++|++.| +..|- |.-...+ ++ -.-.+.+.++.|++..++|
T Consensus 142 PY~~~----------D-----~v~a~rLed~G------c~aVM---PlgsPIG---Sg---~Gl~n~~~l~~i~e~~~vp 191 (267)
T CHL00162 142 PYINA----------D-----PMLAKHLEDIG------CATVM---PLGSPIG---SG---QGLQNLLNLQIIIENAKIP 191 (267)
T ss_pred ecCCC----------C-----HHHHHHHHHcC------CeEEe---eccCccc---CC---CCCCCHHHHHHHHHcCCCc
Confidence 22221 1 35899999999 44331 2211111 11 0112456778899989999
Q ss_pred EEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchH
Q 025135 176 FICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDL 211 (257)
Q Consensus 176 vi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l 211 (257)
|++.+|| +++++..+++-| +|.|.+..+...-+|.
T Consensus 192 VivdAGIgt~sDa~~AmElG-aDgVL~nSaIakA~dP 227 (267)
T CHL00162 192 VIIDAGIGTPSEASQAMELG-ASGVLLNTAVAQAKNP 227 (267)
T ss_pred EEEeCCcCCHHHHHHHHHcC-CCEEeecceeecCCCH
Confidence 9999999 999999999998 9999999999854444
No 183
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0048 Score=53.02 Aligned_cols=137 Identities=20% Similarity=0.294 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEE
Q 025135 17 TSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGV 96 (257)
Q Consensus 17 ~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~v 96 (257)
.+..+..+++|+ +||.|.|-+|.=. ..-+.++++.||+. |. ..|+
T Consensus 70 V~~p~~~i~~fa-------~agad~It~H~E~--------------------------~~~~~r~i~~Ik~~-G~-kaGv 114 (220)
T COG0036 70 VENPDRYIEAFA-------KAGADIITFHAEA--------------------------TEHIHRTIQLIKEL-GV-KAGL 114 (220)
T ss_pred cCCHHHHHHHHH-------HhCCCEEEEEecc--------------------------CcCHHHHHHHHHHc-CC-eEEE
Confidence 345566777664 5899999999632 12367889999975 33 5678
Q ss_pred EEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEe--eCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-
Q 025135 97 RMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHV--TQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ- 173 (257)
Q Consensus 97 rls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~- 173 (257)
=++|. .+.+....+. .+ +|++.+ .+|.+.+.. .-+...+-++++|+...
T Consensus 115 ~lnP~---------Tp~~~i~~~l---~~--------vD~VllMsVnPGfgGQ~--------Fi~~~l~Ki~~lr~~~~~ 166 (220)
T COG0036 115 VLNPA---------TPLEALEPVL---DD--------VDLVLLMSVNPGFGGQK--------FIPEVLEKIRELRAMIDE 166 (220)
T ss_pred EECCC---------CCHHHHHHHH---hh--------CCEEEEEeECCCCcccc--------cCHHHHHHHHHHHHHhcc
Confidence 88874 4555444433 33 444433 246554332 23334445555666554
Q ss_pred --CcEE-EeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 174 --GTFI-CSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 174 --~pvi-~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
...| +=||++.+.+.++.+.| +|.+..|+++..++|+..+++.
T Consensus 167 ~~~~~IeVDGGI~~~t~~~~~~AG-ad~~VaGSalF~~~d~~~~i~~ 212 (220)
T COG0036 167 RLDILIEVDGGINLETIKQLAAAG-ADVFVAGSALFGADDYKATIRE 212 (220)
T ss_pred cCCeEEEEeCCcCHHHHHHHHHcC-CCEEEEEEEEeCCccHHHHHHH
Confidence 2344 44999999999999998 9999999999999997776653
No 184
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.50 E-value=0.0048 Score=53.58 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=80.1
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATD 109 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~ 109 (257)
.++.+.++|.|-|-+|+..+ . .-+.++++++|+. |. .+++-+++.
T Consensus 80 ~i~~~~~~Gad~itvH~ea~-----------------------~--~~~~~~l~~ik~~-G~-~~gval~p~-------- 124 (228)
T PTZ00170 80 WVDDFAKAGASQFTFHIEAT-----------------------E--DDPKAVARKIREA-GM-KVGVAIKPK-------- 124 (228)
T ss_pred HHHHHHHcCCCEEEEeccCC-----------------------c--hHHHHHHHHHHHC-CC-eEEEEECCC--------
Confidence 33555678999999997641 0 1156778888864 32 578888763
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEE---EeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCCCHH
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYL---HVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGFTRE 185 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~it~~ 185 (257)
.+.+...+++ .... +|+| .++ |.+.+.. ..+.....++++++..+ ..+.+.||++++
T Consensus 125 -t~~e~l~~~l---~~~~------vD~Vl~m~v~-pG~~gq~--------~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ 185 (228)
T PTZ00170 125 -TPVEVLFPLI---DTDL------VDMVLVMTVE-PGFGGQS--------FMHDMMPKVRELRKRYPHLNIQVDGGINLE 185 (228)
T ss_pred -CCHHHHHHHH---ccch------hhhHHhhhcc-cCCCCcE--------ecHHHHHHHHHHHHhcccCeEEECCCCCHH
Confidence 2444444332 1111 3433 332 3333221 11222344455666543 457777999999
Q ss_pred HHHHHHHcCCCcEEEechHHhhCchHHHH
Q 025135 186 LGIQALAEDGADLVAYGRLFISNPDLVLR 214 (257)
Q Consensus 186 ~a~~~l~~g~~D~V~igR~~iadP~l~~k 214 (257)
...++++.| +|.+.+||++...++..+.
T Consensus 186 ti~~~~~aG-ad~iVvGsaI~~a~d~~~~ 213 (228)
T PTZ00170 186 TIDIAADAG-ANVIVAGSSIFKAKDRKQA 213 (228)
T ss_pred HHHHHHHcC-CCEEEEchHHhCCCCHHHH
Confidence 999999998 9999999999887775443
No 185
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.49 E-value=0.0016 Score=60.64 Aligned_cols=99 Identities=12% Similarity=-0.045 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCC
Q 025135 77 FLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPG 156 (257)
Q Consensus 77 ~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~ 156 (257)
+.-+-|+.+|+.++ -||.+|=-. +.++ ++.+.+.| +|.|.+++..-.+..
T Consensus 240 ~tW~~i~~lr~~~~-~pvivKgV~-----------~~~d----A~~a~~~G------~d~I~vsnhGGr~~d-------- 289 (383)
T cd03332 240 LTWEDLAFLREWTD-LPIVLKGIL-----------HPDD----ARRAVEAG------VDGVVVSNHGGRQVD-------- 289 (383)
T ss_pred CCHHHHHHHHHhcC-CCEEEecCC-----------CHHH----HHHHHHCC------CCEEEEcCCCCcCCC--------
Confidence 44578999999885 378887211 2333 45677889 888888743211110
Q ss_pred CchhHHHHHHHHHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 157 TEDEEAQLLRTWRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 157 ~~~~~~~~~~~ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
........+.++++.+ .+||++.||| +..+..++|.-| +|+|++||+++
T Consensus 290 ~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLG-A~~v~iGr~~l 341 (383)
T cd03332 290 GSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALG-AKAVLIGRPYA 341 (383)
T ss_pred CCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHH
Confidence 1122345677788877 4899999999 899999999998 99999999999
No 186
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.49 E-value=0.0028 Score=55.56 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHc-
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAE- 193 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~- 193 (257)
..++++.+++.| +..+-++.-..... ......+.++.+++..++|||++||+ +.++..++.+-
T Consensus 146 ~~e~~~~~~~~g------~~~ii~tdI~rdGt---------~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~ 210 (241)
T PRK14114 146 PVSLLKRLKEYG------LEEIVHTEIEKDGT---------LQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVH 210 (241)
T ss_pred HHHHHHHHHhcC------CCEEEEEeechhhc---------CCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcc
Confidence 467889999998 55444332111111 11233467788888889999999999 89999888774
Q ss_pred ----CCCcEEEechHHhhC
Q 025135 194 ----DGADLVAYGRLFISN 208 (257)
Q Consensus 194 ----g~~D~V~igR~~iad 208 (257)
|+++.|.+|+++...
T Consensus 211 ~~~~g~v~gvivg~Al~~g 229 (241)
T PRK14114 211 RETNGLLKGVIVGRAFLEG 229 (241)
T ss_pred cccCCcEEEEEEehHHHCC
Confidence 459999999998764
No 187
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.47 E-value=0.014 Score=52.29 Aligned_cols=119 Identities=11% Similarity=0.065 Sum_probs=73.5
Q ss_pred chhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC-----CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCc
Q 025135 70 SIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA-----TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRY 144 (257)
Q Consensus 70 s~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~-----~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~ 144 (257)
+++...+...++++-.++ .|- .|-..+....+-.+. ....+.+++.++. ++.| +||+.++-+..
T Consensus 109 ~~~eni~~t~~v~~~a~~-~gv-~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~---~~tg------vD~Lavs~Gt~ 177 (282)
T TIGR01859 109 PFEENLALTKKVVEIAHA-KGV-SVEAELGTLGGIEDGVDEKEAELADPDEAEQFV---KETG------VDYLAAAIGTS 177 (282)
T ss_pred CHHHHHHHHHHHHHHHHH-cCC-EEEEeeCCCcCccccccccccccCCHHHHHHHH---HHHC------cCEEeeccCcc
Confidence 456667777777777664 232 455555431111111 0112455554443 3468 89998753332
Q ss_pred ccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeC--CCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 145 TAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG--GFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G--~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
..... + .+....+.++++++.+++|+++-| |++.++..++++.| ++-|-++..+.
T Consensus 178 hg~~~---~---~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~G-i~kiNv~T~l~ 234 (282)
T TIGR01859 178 HGKYK---G---EPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLG-IAKINIDTDCR 234 (282)
T ss_pred ccccC---C---CCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcC-CCEEEECcHHH
Confidence 22110 1 112235678889999999998888 88999999999997 99999998876
No 188
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.47 E-value=0.00098 Score=58.06 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG 195 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~ 195 (257)
.++++.+.+.| ++++|+..-.-. . ....+...++++.+....|+-+.||+ +.++++++++.|
T Consensus 33 ~~~a~~~~~~g------a~~lhivDLd~a---------~-~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~G- 95 (232)
T PRK13586 33 IEIASKLYNEG------YTRIHVVDLDAA---------E-GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLD- 95 (232)
T ss_pred HHHHHHHHHCC------CCEEEEEECCCc---------C-CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCC-
Confidence 56788899999 889988752110 0 12234466677776433599999999 899999999987
Q ss_pred CcEEEechHHhhCchHHHHHHcC
Q 025135 196 ADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 196 ~D~V~igR~~iadP~l~~k~~~g 218 (257)
+|-|.+|...+.||++++++.+.
T Consensus 96 a~kvvigt~a~~~p~~~~~~~~~ 118 (232)
T PRK13586 96 VNALVFSTIVFTNFNLFHDIVRE 118 (232)
T ss_pred CCEEEECchhhCCHHHHHHHHHH
Confidence 99999999999999999998753
No 189
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.45 E-value=0.0031 Score=58.61 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=34.4
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHH
Q 025135 173 QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 173 ~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~ 212 (257)
++|||+.||| +..++.++|.-| +|.|++|+.|+.-.+-+
T Consensus 256 ~vpVIAdGGI~~~~diakAlalG-Ad~Vm~Gs~fa~t~Esp 295 (368)
T PRK08649 256 YVHVIADGGIGTSGDIAKAIACG-ADAVMLGSPLARAAEAP 295 (368)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC-CCeecccchhcccccCC
Confidence 5899999999 899999999988 99999999999755433
No 190
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0022 Score=55.76 Aligned_cols=113 Identities=18% Similarity=0.166 Sum_probs=69.1
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCCC--CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCC
Q 025135 80 QLVREVIVAIGADRVGVRMSPAIDHL--DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGT 157 (257)
Q Consensus 80 eiv~aiR~~vg~~~v~vrls~~~~~~--~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~ 157 (257)
+.++.+.+..| +.|.|=|....+.. +++.+.+.-...++++.+++.| +.-+-++.-..+.. .
T Consensus 112 ~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g------~~~ii~TdI~~DGt---------l 175 (241)
T COG0106 112 DLVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVG------LAHILYTDISRDGT---------L 175 (241)
T ss_pred HHHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHhcC------CCeEEEEecccccc---------c
Confidence 34555566777 44333333221111 1111222224577999999999 44443333222211 1
Q ss_pred chhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 158 EDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 158 ~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
...+....+++.+.+++||+++||+ +.+|.+.+-+.++++.|.+||+++..
T Consensus 176 ~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g 227 (241)
T COG0106 176 SGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEG 227 (241)
T ss_pred CCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcC
Confidence 2234567788999999999999999 78887776665249999999999864
No 191
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.44 E-value=0.0046 Score=55.01 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCcEE--EeCCC-CHHHHHHHHHcCCCcEEEechHHhh--CchH
Q 025135 162 AQLLRTWRRSYQGTFI--CSGGF-TRELGIQALAEDGADLVAYGRLFIS--NPDL 211 (257)
Q Consensus 162 ~~~~~~ir~~~~~pvi--~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia--dP~l 211 (257)
.+.++.+++..++||+ +.||| ||+++..+++.| ||.|.+|+++.. ||..
T Consensus 186 ~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melG-AdGVaVGSaI~ks~dP~~ 239 (287)
T TIGR00343 186 VELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSSNPEK 239 (287)
T ss_pred HHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcC-CCEEEEhHHhhcCCCHHH
Confidence 3567788888899998 99999 999999999987 999999999995 6654
No 192
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.43 E-value=0.011 Score=55.75 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=54.4
Q ss_pred HHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh---------CCcEEEeCCCCHHHHHHHHH
Q 025135 122 GLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY---------QGTFICSGGFTRELGIQALA 192 (257)
Q Consensus 122 ~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---------~~pvi~~G~it~~~a~~~l~ 192 (257)
+..+.| +|||-+. |-|.+..+.. ...+.-+..++.+++.+ ++||++-|||+++.+.++++
T Consensus 315 ~A~~~g------aDYI~lG-PIFpT~TK~~----~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~ 383 (437)
T PRK12290 315 RIVQIQ------PSYIALG-HIFPTTTKQM----PSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQ 383 (437)
T ss_pred HHhhcC------CCEEEEC-CccCCCCCCC----CCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHH
Confidence 345678 8999874 4333221110 01222234455555544 68999999999999999998
Q ss_pred cCCCcEEEechHHhhCchHHHH
Q 025135 193 EDGADLVAYGRLFISNPDLVLR 214 (257)
Q Consensus 193 ~g~~D~V~igR~~iadP~l~~k 214 (257)
.| +|.|++-|++...+|....
T Consensus 384 aG-a~GVAVVSAI~~A~DP~aa 404 (437)
T PRK12290 384 CG-VSSLAVVRAITLAEDPQLV 404 (437)
T ss_pred cC-CCEEEEehHhhcCCCHHHH
Confidence 87 9999999999977665433
No 193
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.43 E-value=0.0059 Score=54.09 Aligned_cols=127 Identities=18% Similarity=0.118 Sum_probs=82.4
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATD 109 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~ 109 (257)
-+..+.++|+|+|-+.+.- |+ ..-+.++++.+++ .|- .+.+-++
T Consensus 125 qi~~a~~~GAD~VlLi~~~-------l~-----------------~~~l~~li~~a~~-lGl-~~lvevh---------- 168 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA-------LD-----------------DEQLKELLDYAHS-LGL-DVLVEVH---------- 168 (260)
T ss_pred HHHHHHHcCCCEEEEEecc-------CC-----------------HHHHHHHHHHHHH-cCC-eEEEEeC----------
Confidence 3667889999999987653 11 1246667777765 343 3455554
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC--CcEEEeCCC-CHHH
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ--GTFICSGGF-TREL 186 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~G~i-t~~~ 186 (257)
+.+++ +...+.| ++++-+++...... ... .....++.+.++ .++|+.||+ |+++
T Consensus 169 --~~~E~----~~A~~~g------adiIgin~rdl~~~----------~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ed 225 (260)
T PRK00278 169 --DEEEL----ERALKLG------APLIGINNRNLKTF----------EVD-LETTERLAPLIPSDRLVVSESGIFTPED 225 (260)
T ss_pred --CHHHH----HHHHHcC------CCEEEECCCCcccc----------cCC-HHHHHHHHHhCCCCCEEEEEeCCCCHHH
Confidence 23333 3344678 78887764322111 111 233455555553 488888888 8999
Q ss_pred HHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 187 GIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 187 a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
+.++++.| +|.|.+|++++..++..+.++
T Consensus 226 ~~~~~~~G-ad~vlVGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 226 LKRLAKAG-ADAVLVGESLMRADDPGAALR 254 (260)
T ss_pred HHHHHHcC-CCEEEECHHHcCCCCHHHHHH
Confidence 99999987 999999999999888755543
No 194
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.43 E-value=0.0025 Score=56.17 Aligned_cols=171 Identities=20% Similarity=0.214 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEE
Q 025135 19 EIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRM 98 (257)
Q Consensus 19 eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrl 98 (257)
++++|++.-.+-|+..+++|+|||-|.==+ =-|. .++. . --....+.-|+.+||+.++ -|+||-+
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~-------D~Py-~~~~-----~-~etvaaM~~i~~~v~~~~~-~p~GVnv 87 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMG-------DVPY-PKRV-----G-PETVAAMARIAREVRREVS-VPVGVNV 87 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCC-------CCCc-cCCC-----C-HHHHHHHHHHHHHHHHhCC-CCEEeee
Confidence 899999999999999999999999873211 1132 1211 1 1234566667777787774 2666544
Q ss_pred ccCC-------------C------CCCC--CC-CCcHHHHHHHHHHHHhcCCccCCceeEE-EeeC---CCccc------
Q 025135 99 SPAI-------------D------HLDA--TD-SDPLGLGLAVIQGLNKLQIDQGAKLTYL-HVTQ---PRYTA------ 146 (257)
Q Consensus 99 s~~~-------------~------~~~~--~~-~~~~~~~~~l~~~L~~~G~~~~~~vd~i-~v~~---~~~~~------ 146 (257)
-... + |-+. .+ +.-...+.++.+.-...|.+ +..+ ++.. .....
T Consensus 88 L~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~----v~ilaDV~~kh~~~l~~~~~~~~ 163 (254)
T PF03437_consen 88 LRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD----VKILADVHVKHSSPLATRDLEEA 163 (254)
T ss_pred ecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCC----eEEEeeechhhcccCCCCCHHHH
Confidence 3210 0 1000 00 00011233344433333411 2211 1110 00000
Q ss_pred ----------CCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCch
Q 025135 147 ----------YGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPD 210 (257)
Q Consensus 147 ----------~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~ 210 (257)
-+...+|...+.+.....++.+|+.++.||++++|+|++.+.++|.. ||.+.+|..|=.|-.
T Consensus 164 ~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~--ADG~IVGS~~K~~G~ 235 (254)
T PF03437_consen 164 AKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSY--ADGAIVGSYFKKDGK 235 (254)
T ss_pred HHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHh--CCEEEEeeeeeeCCE
Confidence 00001111112333456678899999999999999999999999964 999999988764443
No 195
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.42 E-value=0.0013 Score=57.61 Aligned_cols=83 Identities=13% Similarity=0.005 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCC
Q 025135 118 AVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGA 196 (257)
Q Consensus 118 ~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~ 196 (257)
..++.+.+.| ..++|+..-... . ..+.+...++++.+.+..||-+.||+ |.++++.+++.| +
T Consensus 35 ~~a~~~~~~g------~~~lhivDLd~a---------~-g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~G-a 97 (243)
T TIGR01919 35 SAAKWWEQGG------AEWIHLVDLDAA---------F-GGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGG-R 97 (243)
T ss_pred HHHHHHHhCC------CeEEEEEECCCC---------C-CCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcC-C
Confidence 4667778888 788888652110 0 23344567788888888999999999 899999999987 9
Q ss_pred cEEEechHHhhCchHHHHHHc
Q 025135 197 DLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 197 D~V~igR~~iadP~l~~k~~~ 217 (257)
|-|.+|..++.||+|++++.+
T Consensus 98 ~~vvigT~a~~~p~~~~~~~~ 118 (243)
T TIGR01919 98 ARVNGGTAALENPWWAAAVIR 118 (243)
T ss_pred CEEEECchhhCCHHHHHHHHH
Confidence 999999999999999999875
No 196
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.40 E-value=0.0029 Score=56.01 Aligned_cols=139 Identities=9% Similarity=-0.001 Sum_probs=82.6
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe--EEEEEccCCC---
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR--VGVRMSPAID--- 103 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~--v~vrls~~~~--- 103 (257)
+.+++..++|+|-|-|...- . +...+-.+.++.+-+..|++. +++-.....+
T Consensus 95 e~i~~~l~~Ga~rViigT~A----------v-------------~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~ 151 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYV----------F-------------RDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYY 151 (262)
T ss_pred HHHHHHHHcCCCEEEEchHH----------H-------------hCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEE
Confidence 66778888999988886542 1 111122345555556677663 3443320011
Q ss_pred -CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 104 -HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 104 -~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
+..++...+.-...+++..+.+.| +..+-++.-..+.. ......+.++.+++.+++|||++||+
T Consensus 152 Va~~GW~~~t~~~~~e~~~~~~~~g------~~eii~TdI~rDGt---------l~G~d~el~~~l~~~~~ipVIASGGv 216 (262)
T PLN02446 152 VVTDRWQKFSDLAVDEETLEFLAAY------CDEFLVHGVDVEGK---------RLGIDEELVALLGEHSPIPVTYAGGV 216 (262)
T ss_pred EEECCCcccCCCCHHHHHHHHHHhC------CCEEEEEEEcCCCc---------ccCCCHHHHHHHHhhCCCCEEEECCC
Confidence 111111112223456667777777 55444332111111 11233567788899999999999999
Q ss_pred -CHHHHHHHHHcC-CCcEEEechHH
Q 025135 183 -TRELGIQALAED-GADLVAYGRLF 205 (257)
Q Consensus 183 -t~~~a~~~l~~g-~~D~V~igR~~ 205 (257)
+.++..++.+.| .+..|.+||++
T Consensus 217 ~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 217 RSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred CCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 899999988875 57889999998
No 197
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=97.38 E-value=0.0059 Score=55.89 Aligned_cols=118 Identities=20% Similarity=0.163 Sum_probs=72.6
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATD 109 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~ 109 (257)
....+.+.+.+.|-.++|. |. .++++.+++. |- .+...++
T Consensus 105 ~~~~~~~~~~~~v~~~~G~---------p~-------------------~~~i~~l~~~-gi-~v~~~v~---------- 144 (330)
T PF03060_consen 105 QLDVALEAKPDVVSFGFGL---------PP-------------------PEVIERLHAA-GI-KVIPQVT---------- 144 (330)
T ss_dssp HHHHHHHS--SEEEEESSS---------C--------------------HHHHHHHHHT-T--EEEEEES----------
T ss_pred ccccccccceEEEEeeccc---------ch-------------------HHHHHHHHHc-CC-ccccccC----------
Confidence 3444556677799888776 31 3456666653 22 4555554
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCC-c-hhHHHHHHHHHHHhCCcEEEeCCC-CHHH
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGT-E-DEEAQLLRTWRRSYQGTFICSGGF-TREL 186 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ir~~~~~pvi~~G~i-t~~~ 186 (257)
+. +.++.+.+.| +|.|.+...-- |++.. . .....++..+++.+++|||+.||| +.++
T Consensus 145 --s~----~~A~~a~~~G------~D~iv~qG~eA--------GGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ 204 (330)
T PF03060_consen 145 --SV----REARKAAKAG------ADAIVAQGPEA--------GGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRG 204 (330)
T ss_dssp --SH----HHHHHHHHTT-------SEEEEE-TTS--------SEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHH
T ss_pred --CH----HHHHHhhhcC------CCEEEEecccc--------CCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHH
Confidence 23 3456778889 88887654211 11111 1 123456678999999999999999 9999
Q ss_pred HHHHHHcCCCcEEEechHHhhC
Q 025135 187 GIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 187 a~~~l~~g~~D~V~igR~~iad 208 (257)
+..+|.-| +|+|.||..|++=
T Consensus 205 iaaal~lG-A~gV~~GTrFl~t 225 (330)
T PF03060_consen 205 IAAALALG-ADGVQMGTRFLAT 225 (330)
T ss_dssp HHHHHHCT--SEEEESHHHHTS
T ss_pred HHHHHHcC-CCEeecCCeEEec
Confidence 99999998 9999999999953
No 198
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.37 E-value=0.0025 Score=59.35 Aligned_cols=97 Identities=12% Similarity=0.021 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCch
Q 025135 80 QLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTED 159 (257)
Q Consensus 80 eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~ 159 (257)
+-|+.+|+.++- ||.+|=-. +.+ -++.+.+.| +|.|.+++-.-.+.. ...
T Consensus 235 ~di~~lr~~~~~-pvivKgV~-----------s~~----dA~~a~~~G------vd~I~Vs~hGGr~~d--------~~~ 284 (381)
T PRK11197 235 KDLEWIRDFWDG-PMVIKGIL-----------DPE----DARDAVRFG------ADGIVVSNHGGRQLD--------GVL 284 (381)
T ss_pred HHHHHHHHhCCC-CEEEEecC-----------CHH----HHHHHHhCC------CCEEEECCCCCCCCC--------Ccc
Confidence 448889998754 66666321 233 356677899 898888642211110 112
Q ss_pred hHHHHHHHHHHHh--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 160 EEAQLLRTWRRSY--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 160 ~~~~~~~~ir~~~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
.....+..+++.+ ++|||+.||| +..++.++|.-| +|+|++||+++.
T Consensus 285 ~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLG-A~~V~iGr~~l~ 334 (381)
T PRK11197 285 SSARALPAIADAVKGDITILADSGIRNGLDVVRMIALG-ADTVLLGRAFVY 334 (381)
T ss_pred cHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcC-cCceeEhHHHHH
Confidence 2345566677666 5899999999 899999999998 999999999984
No 199
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.37 E-value=0.0037 Score=53.96 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=37.7
Q ss_pred cEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 175 TFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 175 pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
|+|.+||| ++++|.++.+.| +|.|..|.-.-.+|+-..++..
T Consensus 193 ~LivGGGIrs~E~A~~~a~ag-AD~IVtG~iiee~~~~~~~~v~ 235 (240)
T COG1646 193 PLIVGGGIRSPEQAREMAEAG-ADTIVTGTIIEEDPDKALETVE 235 (240)
T ss_pred eEEEcCCcCCHHHHHHHHHcC-CCEEEECceeecCHHHHHHHHH
Confidence 89999999 899999999988 9999999999999977766654
No 200
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.36 E-value=0.0018 Score=56.27 Aligned_cols=111 Identities=15% Similarity=0.070 Sum_probs=66.4
Q ss_pred HHHHHHHHhCCC--eEEEEEccC-CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCC
Q 025135 81 LVREVIVAIGAD--RVGVRMSPA-IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGT 157 (257)
Q Consensus 81 iv~aiR~~vg~~--~v~vrls~~-~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~ 157 (257)
.++.+.+..|++ .+++-+... .-+..++...+.-...++++.+.+.| +.-+-++.-..... .
T Consensus 111 ~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g------~~~ii~tdi~~dGt---------~ 175 (229)
T PF00977_consen 111 LLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELG------AGEIILTDIDRDGT---------M 175 (229)
T ss_dssp HHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-------SEEEEEETTTTTT---------S
T ss_pred HHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcC------CcEEEEeeccccCC---------c
Confidence 355555666764 345544421 11111111111123467888999998 55443332211111 1
Q ss_pred chhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 158 EDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 158 ~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
.....+.++.+++.+++|||++||+ +.++..++.+.| +|.|.+|++|..
T Consensus 176 ~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G-~~gvivg~al~~ 225 (229)
T PF00977_consen 176 QGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAG-IDGVIVGSALHE 225 (229)
T ss_dssp SS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTT-ECEEEESHHHHT
T ss_pred CCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCC-CcEEEEehHhhC
Confidence 1233467888999999999999999 899999998777 899999999864
No 201
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.36 E-value=0.0016 Score=56.71 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCC-cEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCch-HHHHHH
Q 025135 161 EAQLLRTWRRSYQG-TFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPD-LVLRFK 216 (257)
Q Consensus 161 ~~~~~~~ir~~~~~-pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~-l~~k~~ 216 (257)
..+.++.+++.++. ||+++||| +++++++++..| +|.|.+|..+..||+ .++.++
T Consensus 171 ~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~G-AD~VVVGSai~~d~~~~~~~~~ 228 (232)
T PRK04169 171 PPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAG-ADTIVVGNIIEEDPKKTVKAIK 228 (232)
T ss_pred CHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhC-CCEEEEChHHhhCHHHHHHHHH
Confidence 34677889999888 99999999 899999999988 999999999999998 555444
No 202
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.33 E-value=0.0053 Score=53.84 Aligned_cols=80 Identities=16% Similarity=0.081 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHH--H
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQA--L 191 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~--l 191 (257)
...++++.+++.| +..+-++.-..+.. ........++.+++..++|||++||+ +.++..++ +
T Consensus 150 ~~~~~~~~~~~~g------~~~ii~tdI~~dGt---------~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l 214 (243)
T TIGR01919 150 DLEVLERLLDSGG------CSRVVVTDSKKDGL---------SGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYL 214 (243)
T ss_pred cHHHHHHHHHhCC------CCEEEEEecCCccc---------CCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhh
Confidence 4567889999998 54444332211111 11233467788888889999999999 88998876 4
Q ss_pred HcCCCcEEEechHHhhCc
Q 025135 192 AEDGADLVAYGRLFISNP 209 (257)
Q Consensus 192 ~~g~~D~V~igR~~iadP 209 (257)
.+.++|.|.+|+++...-
T Consensus 215 ~~~Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 215 DEGGVSVAIGGKLLYARF 232 (243)
T ss_pred ccCCeeEEEEhHHHHcCC
Confidence 455699999999987643
No 203
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=97.33 E-value=0.0033 Score=58.29 Aligned_cols=97 Identities=13% Similarity=-0.036 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCc
Q 025135 79 MQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTE 158 (257)
Q Consensus 79 ~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~ 158 (257)
-+-|+.+|+.++- ||.+|=-. +.+ -++.+.++| +|.|.+++-.-.+.. .-
T Consensus 213 W~di~wlr~~~~~-PiivKgV~-----------~~~----dA~~a~~~G------vd~I~VsnhGGrqld--------~~ 262 (367)
T PLN02493 213 WKDVQWLQTITKL-PILVKGVL-----------TGE----DARIAIQAG------AAGIIVSNHGARQLD--------YV 262 (367)
T ss_pred HHHHHHHHhccCC-CEEeecCC-----------CHH----HHHHHHHcC------CCEEEECCCCCCCCC--------Cc
Confidence 3667888887653 77777432 233 456788899 898888753221111 11
Q ss_pred hhHHHHHHHHHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 159 DEEAQLLRTWRRSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 159 ~~~~~~~~~ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+.....+.++++.+. +|||+.||| +..++.++|.-| +|+|++||+++
T Consensus 263 ~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALG-A~aV~iGr~~l 312 (367)
T PLN02493 263 PATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVV 312 (367)
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHH
Confidence 223456666777654 899999999 899999999998 99999999999
No 204
>PRK06801 hypothetical protein; Provisional
Probab=97.32 E-value=0.024 Score=50.93 Aligned_cols=139 Identities=13% Similarity=0.124 Sum_probs=85.4
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEc---cCCCC---
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMS---PAIDH--- 104 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls---~~~~~--- 104 (257)
+++|.++||+.|.+-+.+ -+++...+...++++..+.. |- .|-.-+. ..++.
T Consensus 90 i~~Ai~~GftSVm~D~S~--------------------l~~eeNi~~t~~v~~~a~~~-gv-~VE~ElG~vgg~e~~v~~ 147 (286)
T PRK06801 90 VVRALRLGFSSVMFDGST--------------------LEYEENVRQTREVVKMCHAV-GV-SVEAELGAVGGDEGGALY 147 (286)
T ss_pred HHHHHHhCCcEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-eEEeecCcccCCCCCccc
Confidence 456667778777776544 13567788888988888764 32 2322222 11110
Q ss_pred C--CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC-
Q 025135 105 L--DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG- 181 (257)
Q Consensus 105 ~--~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~- 181 (257)
. +.......+++.++++ +.| +|++-++-+...+... + ......+.++.+++.+++|+++-|+
T Consensus 148 ~~~~~~~~T~pe~a~~f~~---~tg------vD~LAvaiGt~Hg~y~---~---~~~l~~e~l~~i~~~~~~PLVlHGGS 212 (286)
T PRK06801 148 GEADSAKFTDPQLARDFVD---RTG------IDALAVAIGNAHGKYK---G---EPKLDFARLAAIHQQTGLPLVLHGGS 212 (286)
T ss_pred CCcccccCCCHHHHHHHHH---HHC------cCEEEeccCCCCCCCC---C---CCCCCHHHHHHHHHhcCCCEEEECCC
Confidence 0 0000123355544443 568 8999875433332221 0 1123346778899999999888777
Q ss_pred -CCHHHHHHHHHcCCCcEEEechHHhh
Q 025135 182 -FTRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 182 -it~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
++.++..++++.| ++-|-+++.+..
T Consensus 213 gi~~e~~~~~i~~G-i~KINv~T~~~~ 238 (286)
T PRK06801 213 GISDADFRRAIELG-IHKINFYTGMSQ 238 (286)
T ss_pred CCCHHHHHHHHHcC-CcEEEehhHHHH
Confidence 7889999999998 999999988864
No 205
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.32 E-value=0.0045 Score=52.05 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=80.1
Q ss_pred ChhhHHHHHHHH------------HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHH
Q 025135 16 QTSEIPEVIDQY------------RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVR 83 (257)
Q Consensus 16 t~~eI~~ii~~f------------~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~ 83 (257)
..+.|+.+.+.| ...+..|.++|.|+| |. |.++ .++++
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i--~~-----------p~~~-----------------~~~~~ 91 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFI--VS-----------PGLD-----------------PEVVK 91 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE--Ec-----------CCCC-----------------HHHHH
Confidence 445778888776 456777888999988 32 2221 35666
Q ss_pred HHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHH
Q 025135 84 EVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQ 163 (257)
Q Consensus 84 aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (257)
+.|+ .+. ++.+ .. .+.+++ ....+.| +||+-+. |. ......
T Consensus 92 ~~~~-~~~-~~i~--gv----------~t~~e~----~~A~~~G------ad~i~~~-p~--------------~~~g~~ 132 (190)
T cd00452 92 AANR-AGI-PLLP--GV----------ATPTEI----MQALELG------ADIVKLF-PA--------------EAVGPA 132 (190)
T ss_pred HHHH-cCC-cEEC--Cc----------CCHHHH----HHHHHCC------CCEEEEc-CC--------------cccCHH
Confidence 6554 343 2221 11 123332 3345688 8998763 10 011234
Q ss_pred HHHHHHHHh-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 164 LLRTWRRSY-QGTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 164 ~~~~ir~~~-~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
.++.+++.+ .+|+++.||++++.+.++++.| +|.|+++..+.
T Consensus 133 ~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G-~~~v~v~s~i~ 175 (190)
T cd00452 133 YIKALKGPFPQVRFMPTGGVSLDNAAEWLAAG-VVAVGGGSLLP 175 (190)
T ss_pred HHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCC-CEEEEEchhcc
Confidence 567777776 4899999999999999999998 99999999987
No 206
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.32 E-value=0.012 Score=55.17 Aligned_cols=124 Identities=20% Similarity=0.244 Sum_probs=79.7
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEE-EEccCCCCCCCCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGV-RMSPAIDHLDATD 109 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~v-rls~~~~~~~~~~ 109 (257)
++.+.++|+|.+-+|+..+ ..-+.+.++++|+. |. .+++ =+++.
T Consensus 243 v~~~a~aGAD~vTVH~ea~-------------------------~~ti~~ai~~akk~-Gi-kvgVD~lnp~-------- 287 (391)
T PRK13307 243 ARMAADATADAVVISGLAP-------------------------ISTIEKAIHEAQKT-GI-YSILDMLNVE-------- 287 (391)
T ss_pred HHHHHhcCCCEEEEeccCC-------------------------HHHHHHHHHHHHHc-CC-EEEEEEcCCC--------
Confidence 5667799999999997541 11356677777764 32 4666 34431
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHH-hCCcEEEeCCCCHHHHH
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRS-YQGTFICSGGFTRELGI 188 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~~pvi~~G~it~~~a~ 188 (257)
++. +.++.+ ..+ +|++.++.. .+... ..+ .+..++.+|+. .+.+|.+.||++.+.+.
T Consensus 288 -tp~----e~i~~l-~~~------vD~Vllht~-vdp~~--------~~~-~~~kI~~ikk~~~~~~I~VdGGI~~eti~ 345 (391)
T PRK13307 288 -DPV----KLLESL-KVK------PDVVELHRG-IDEEG--------TEH-AWGNIKEIKKAGGKILVAVAGGVRVENVE 345 (391)
T ss_pred -CHH----HHHHHh-hCC------CCEEEEccc-cCCCc--------ccc-hHHHHHHHHHhCCCCcEEEECCcCHHHHH
Confidence 222 234444 446 788877642 11101 111 22455667764 35679999999999999
Q ss_pred HHHHcCCCcEEEechHHhhCchHH
Q 025135 189 QALAEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 189 ~~l~~g~~D~V~igR~~iadP~l~ 212 (257)
++++.| +|.+.+||++...+|..
T Consensus 346 ~l~~aG-ADivVVGsaIf~a~Dp~ 368 (391)
T PRK13307 346 EALKAG-ADILVVGRAITKSKDVR 368 (391)
T ss_pred HHHHcC-CCEEEEeHHHhCCCCHH
Confidence 999887 99999999988766643
No 207
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.29 E-value=0.004 Score=60.61 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHc
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAE 193 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~ 193 (257)
+..++++.+++.| +.-|-++.-..+.. ......++++.+++.+++|||++||. ++++..+++..
T Consensus 439 ~~~~~~~~~~~~G------ageil~t~id~DGt---------~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~ 503 (538)
T PLN02617 439 GAYELAKAVEELG------AGEILLNCIDCDGQ---------GKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSK 503 (538)
T ss_pred CHHHHHHHHHhcC------CCEEEEeecccccc---------ccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhc
Confidence 4678999999999 55444432211111 12233567788999999999999999 99999999998
Q ss_pred CCCcEEEechHHhh
Q 025135 194 DGADLVAYGRLFIS 207 (257)
Q Consensus 194 g~~D~V~igR~~ia 207 (257)
+.+|.+..|.-|--
T Consensus 504 ~~~~a~~aa~~fh~ 517 (538)
T PLN02617 504 TNASAALAAGIFHR 517 (538)
T ss_pred CCccEEEEEeeecc
Confidence 88999988866554
No 208
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.27 E-value=0.012 Score=51.02 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC--eEEEEEccCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD--RVGVRMSPAIDHL 105 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~--~v~vrls~~~~~~ 105 (257)
...++.|.+.|.|+|++..-.|++.+ .+..-..+-+++|++.+... ++.+-.-+...
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~-------------------~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~-- 137 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS-------------------GNEDEVIEEIAAVVEECHKYGLKVILEPYLRGE-- 137 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT-------------------THHHHHHHHHHHHHHHHHTSEEEEEEEECECHH--
T ss_pred HHHHHHHHHcCCceeeeecccccccc-------------------ccHHHHHHHHHHHHHHHhcCCcEEEEEEecCch--
Confidence 66788899999999998776655433 12345666677777777543 34433221100
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCc----EEEeCC
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGT----FICSGG 181 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~p----vi~~G~ 181 (257)
...+....+.....++...+.| +||+-.+.+.. .+ ........++++-+...+| |.++||
T Consensus 138 ~~~~~~~~~~I~~a~ria~e~G------aD~vKt~tg~~--~~--------~t~~~~~~~~~~~~~~~~p~~~~Vk~sGG 201 (236)
T PF01791_consen 138 EVADEKKPDLIARAARIAAELG------ADFVKTSTGKP--VG--------ATPEDVELMRKAVEAAPVPGKVGVKASGG 201 (236)
T ss_dssp HBSSTTHHHHHHHHHHHHHHTT-------SEEEEE-SSS--SC--------SHHHHHHHHHHHHHTHSSTTTSEEEEESS
T ss_pred hhcccccHHHHHHHHHHHHHhC------CCEEEecCCcc--cc--------ccHHHHHHHHHHHHhcCCCcceEEEEeCC
Confidence 0000112334567888889999 99998876522 11 1223334455555556788 999999
Q ss_pred C-------CHHHHHHHHHcCCC--cEEEechHHh
Q 025135 182 F-------TRELGIQALAEDGA--DLVAYGRLFI 206 (257)
Q Consensus 182 i-------t~~~a~~~l~~g~~--D~V~igR~~i 206 (257)
+ +.+++.++++.| + -.++.||..+
T Consensus 202 i~~~~~~~~l~~a~~~i~aG-a~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 202 IDAEDFLRTLEDALEFIEAG-ADRIGTSSGRNIW 234 (236)
T ss_dssp SSHHHHHHSHHHHHHHHHTT-HSEEEEEEHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHH
Confidence 8 256788888888 8 6777777654
No 209
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=97.26 E-value=0.01 Score=54.09 Aligned_cols=72 Identities=17% Similarity=0.068 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDH 104 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~ 104 (257)
+++++.|+.+.+.||..+.|+.+. . .-.+.|++||++++ + +.+++-.+..
T Consensus 131 ~~~~~~~~~~~~~G~~~~KlKv~~----------~-----------------~d~~~v~avr~~~~-~-~~l~vDaN~~- 180 (321)
T PRK15129 131 EQMANSASALWQAGAKLLKVKLDN----------H-----------------LISERMVAIRSAVP-D-ATLIVDANES- 180 (321)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC----------c-----------------hHHHHHHHHHHhCC-C-CeEEEECCCC-
Confidence 456666777778999999998521 0 12377999999995 3 3445543322
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEE
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLH 138 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~ 138 (257)
.+.+++..+++.|++.+ +.|++
T Consensus 181 ------w~~~~A~~~~~~l~~~~------i~~iE 202 (321)
T PRK15129 181 ------WRAEGLAARCQLLADLG------VAMLE 202 (321)
T ss_pred ------CCHHHHHHHHHHHHhcC------ceEEE
Confidence 35678899999999998 88887
No 210
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.22 E-value=0.046 Score=48.42 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhh----------HhhHHHHHHHHHHHHhCCCe
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIEN----------RCRFLMQLVREVIVAIGADR 93 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~en----------R~r~~~eiv~aiR~~vg~~~ 93 (257)
.+.+.+.++.+.++|.|.|||-. |.++---| |.-+.+ .++-++++++.+|+.-.+-|
T Consensus 23 ~~~~~~~~~~l~~~GaD~iEiGi-----------PfSDP~AD--GpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~p 89 (259)
T PF00290_consen 23 LETTLEILKALEEAGADIIEIGI-----------PFSDPVAD--GPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIP 89 (259)
T ss_dssp HHHHHHHHHHHHHTTBSSEEEE-------------SSSCTTS--SHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred HHHHHHHHHHHHHcCCCEEEECC-----------CCCCCCCC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence 46677888888899999999954 33333333 222221 14557889999995443336
Q ss_pred EEEEE--ccC-----C---------CCCCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc----------c
Q 025135 94 VGVRM--SPA-----I---------DHLDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT----------A 146 (257)
Q Consensus 94 v~vrl--s~~-----~---------~~~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~----------~ 146 (257)
|.+-. ++. + +.++. -...+.++...+.+.+.+.| ++.|.+..|... .
T Consensus 90 ivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~g------l~~I~lv~p~t~~~Ri~~i~~~a 163 (259)
T PF00290_consen 90 IVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHG------LDLIPLVAPTTPEERIKKIAKQA 163 (259)
T ss_dssp EEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-------EEEEEEETTS-HHHHHHHHHH-
T ss_pred EEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcC------CeEEEEECCCCCHHHHHHHHHhC
Confidence 43321 110 0 01110 01234556666667777777 676666554221 0
Q ss_pred CCCc----C---CCCCC-CchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 147 YGQT----E---SGRPG-TEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 147 ~~~~----~---~~~~~-~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
.++. . .|... ........++.+|+..+.||+++=|| +++++.++. . .+|.|.+|.+++
T Consensus 164 ~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~-~aDGvIVGSa~v 230 (259)
T PF00290_consen 164 SGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-A-GADGVIVGSAFV 230 (259)
T ss_dssp SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-T-TSSEEEESHHHH
T ss_pred CcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-c-cCCEEEECHHHH
Confidence 1110 0 11111 11234467788999999999887778 899999998 5 499999998876
No 211
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.21 E-value=0.017 Score=55.91 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=56.4
Q ss_pred HHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCc---
Q 025135 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGAD--- 197 (257)
Q Consensus 121 ~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D--- 197 (257)
....+.| +||+-+. |-+...... ...+...+.++.+.+...+||++-||++++.+.++++.| +|
T Consensus 404 ~~a~~~g------adyi~~g-pif~t~tk~-----~~~~~g~~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G-~~~~~ 470 (502)
T PLN02898 404 EQAWKDG------ADYIGCG-GVFPTNTKA-----NNKTIGLDGLREVCEASKLPVVAIGGISASNAASVMESG-APNLK 470 (502)
T ss_pred HHHhhcC------CCEEEEC-CeecCCCCC-----CCCCCCHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHcC-CCcCc
Confidence 3345678 8999864 333322110 012222456667777788999999999999999999887 77
Q ss_pred EEEechHHhhCchHHHHH
Q 025135 198 LVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 198 ~V~igR~~iadP~l~~k~ 215 (257)
+|++++.+...+|..+.+
T Consensus 471 gvav~~~i~~~~d~~~~~ 488 (502)
T PLN02898 471 GVAVVSALFDQEDVLKAT 488 (502)
T ss_pred eEEEEeHHhcCCCHHHHH
Confidence 999999998766654433
No 212
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.20 E-value=0.024 Score=46.95 Aligned_cols=142 Identities=18% Similarity=0.111 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCC-C-eEEEEEccCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGA-D-RVGVRMSPAI 102 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~-~-~v~vrls~~~ 102 (257)
+.+.+.++.+.+.|.|||.+.+ ++++.+++.++. . +|.++++...
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g---------------------------------~~i~~~~~~~~~~~~~v~~~v~~~~ 59 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP---------------------------------GYVRLAADALAGSDVPVIVVVGFPT 59 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH---------------------------------HHHHHHHHHhCCCCCeEEEEecCCC
Confidence 4455666677779999999874 667778877765 4 7888887531
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEe-
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICS- 179 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~- 179 (257)
.. ...++..+.++.+.+.| +|.+.+..+.+..+. + .........+.+++.. +.|++.-
T Consensus 60 ~~------~~~~~~~~~a~~a~~~G------ad~i~v~~~~~~~~~----~---~~~~~~~~~~~i~~~~~~~~pv~iy~ 120 (201)
T cd00945 60 GL------TTTEVKVAEVEEAIDLG------ADEIDVVINIGSLKE----G---DWEEVLEEIAAVVEAADGGLPLKVIL 120 (201)
T ss_pred CC------CcHHHHHHHHHHHHHcC------CCEEEEeccHHHHhC----C---CHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 11 23677889999999999 888887655332110 0 0122234556677774 7886642
Q ss_pred --CCC-CHHHHHHH---HHcCCCcEEEechHHh---hCchHHHHHHcC
Q 025135 180 --GGF-TRELGIQA---LAEDGADLVAYGRLFI---SNPDLVLRFKLN 218 (257)
Q Consensus 180 --G~i-t~~~a~~~---l~~g~~D~V~igR~~i---adP~l~~k~~~g 218 (257)
+.. +++...++ +++-++|+|-..-+.. .|...+.++++-
T Consensus 121 ~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~ 168 (201)
T cd00945 121 ETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEA 168 (201)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHh
Confidence 333 55554443 3455699998876643 266666777653
No 213
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.20 E-value=0.0074 Score=55.63 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=55.8
Q ss_pred HHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEe
Q 025135 122 GLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAY 201 (257)
Q Consensus 122 ~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~i 201 (257)
...+.| +||+-++ |-+.+.... ...+.....++.+++..++||++-|||+++.+.++++.| +|+|++
T Consensus 255 ~A~~~G------aDYI~lG-Pvf~T~tKp-----~~~~~Gle~l~~~~~~~~iPv~AiGGI~~~ni~~l~~~G-a~gVAv 321 (347)
T PRK02615 255 KAIAEG------ADYIGVG-PVFPTPTKP-----GKAPAGLEYLKYAAKEAPIPWFAIGGIDKSNIPEVLQAG-AKRVAV 321 (347)
T ss_pred HHHHcC------CCEEEEC-CCcCCCCCC-----CCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC-CcEEEE
Confidence 344567 8998874 444322111 011223466777888889999999999999999999887 999999
Q ss_pred chHHhhCchHH
Q 025135 202 GRLFISNPDLV 212 (257)
Q Consensus 202 gR~~iadP~l~ 212 (257)
+++++..++..
T Consensus 322 isaI~~a~dp~ 332 (347)
T PRK02615 322 VRAIMGAEDPK 332 (347)
T ss_pred eHHHhCCCCHH
Confidence 99999755533
No 214
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.19 E-value=0.027 Score=48.84 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=76.0
Q ss_pred HHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHH
Q 025135 35 IQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLG 114 (257)
Q Consensus 35 ~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~ 114 (257)
.++|+|-|-+|.=. ..-+.++++.||+. |- ..|+=|++. .+.+
T Consensus 82 ~~~gad~I~~H~Ea--------------------------~~~~~~~l~~Ir~~-g~-k~GlalnP~---------T~~~ 124 (223)
T PRK08745 82 ADAGATTISFHPEA--------------------------SRHVHRTIQLIKSH-GC-QAGLVLNPA---------TPVD 124 (223)
T ss_pred HHhCCCEEEEcccC--------------------------cccHHHHHHHHHHC-CC-ceeEEeCCC---------CCHH
Confidence 45899999999742 01256778889976 43 578888874 3455
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEe--eCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-----CCcEEEeCCCCHHHH
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHV--TQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-----QGTFICSGGFTRELG 187 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~~G~it~~~a 187 (257)
....++. . +|+|-+ ++|.+.+..+ .+....-++++|+.. +..|-+-||++.+.+
T Consensus 125 ~i~~~l~---~--------vD~VlvMtV~PGf~GQ~f--------i~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti 185 (223)
T PRK08745 125 ILDWVLP---E--------LDLVLVMSVNPGFGGQAF--------IPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNI 185 (223)
T ss_pred HHHHHHh---h--------cCEEEEEEECCCCCCccc--------cHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHH
Confidence 4444433 2 444332 2455543321 122223333344432 233666799999999
Q ss_pred HHHHHcCCCcEEEechHHhhCchHHH
Q 025135 188 IQALAEDGADLVAYGRLFISNPDLVL 213 (257)
Q Consensus 188 ~~~l~~g~~D~V~igR~~iadP~l~~ 213 (257)
.++.+.| +|.+.+|+++...++.-.
T Consensus 186 ~~l~~aG-aDi~V~GSaiF~~~d~~~ 210 (223)
T PRK08745 186 GAIAAAG-ADTFVAGSAIFNAPDYAQ 210 (223)
T ss_pred HHHHHcC-CCEEEEChhhhCCCCHHH
Confidence 9999998 999999999987666433
No 215
>PRK08005 epimerase; Validated
Probab=97.19 E-value=0.027 Score=48.33 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=79.0
Q ss_pred HHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCc
Q 025135 33 NAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDP 112 (257)
Q Consensus 33 ~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~ 112 (257)
...++|.|-|-+|.=. +..+.++++.||+. |. ..|+=+++. .+
T Consensus 76 ~~~~~gad~It~H~Ea--------------------------~~~~~~~l~~Ik~~-G~-k~GlAlnP~---------Tp 118 (210)
T PRK08005 76 WLAAIRPGWIFIHAES--------------------------VQNPSEILADIRAI-GA-KAGLALNPA---------TP 118 (210)
T ss_pred HHHHhCCCEEEEcccC--------------------------ccCHHHHHHHHHHc-CC-cEEEEECCC---------CC
Confidence 3456899999999642 11256778888875 43 578888874 34
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEe--eCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCCCHHHHHH
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHV--TQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGFTRELGIQ 189 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~it~~~a~~ 189 (257)
.+....++. . +|+|.+ ++|.+.+.. ..+....-++++|+..+ ..+-+=||++.+.+.+
T Consensus 119 ~~~i~~~l~---~--------vD~VlvMsV~PGf~GQ~--------f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~ 179 (210)
T PRK08005 119 LLPYRYLAL---Q--------LDALMIMTSEPDGRGQQ--------FIAAMCEKVSQSREHFPAAECWADGGITLRAARL 179 (210)
T ss_pred HHHHHHHHH---h--------cCEEEEEEecCCCccce--------ecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHH
Confidence 554444433 2 444433 245554322 12222233334444432 2466669999999999
Q ss_pred HHHcCCCcEEEechHHhhCchHHHHH
Q 025135 190 ALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 190 ~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
+.+.| +|.+.+|+++..+++.-+.+
T Consensus 180 l~~aG-ad~~V~GsaiF~~~d~~~~~ 204 (210)
T PRK08005 180 LAAAG-AQHLVIGRALFTTANYDVTL 204 (210)
T ss_pred HHHCC-CCEEEEChHhhCCCCHHHHH
Confidence 99998 99999999999877754444
No 216
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.0078 Score=51.85 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
+.-++.|.+.|.|-|++-.--|+|.+ .+...+.+=|++|++++++. +.+|+=....+
T Consensus 80 ~~Ea~~ai~~GAdEiDmVinig~~k~-------------------g~~~~V~~eI~~v~~a~~~~-~~lKVIlEt~~--- 136 (228)
T COG0274 80 AAEAREAIENGADEIDMVINIGALKS-------------------GNWEAVEREIRAVVEACADA-VVLKVILETGL--- 136 (228)
T ss_pred HHHHHHHHHcCCCeeeeeeeHHHHhc-------------------CCHHHHHHHHHHHHHHhCCC-ceEEEEEeccc---
Confidence 34567778899999887665555433 23567888899999999974 34444332222
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC--CcEEEeCCC-CH
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ--GTFICSGGF-TR 184 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~G~i-t~ 184 (257)
.+.++-...++...++| .|||-.+.+ +.. .....+.++.+++.++ +.|=++||+ |.
T Consensus 137 ---Lt~ee~~~A~~i~~~aG------AdFVKTSTG-f~~-----------~gAT~edv~lM~~~vg~~vgvKaSGGIrt~ 195 (228)
T COG0274 137 ---LTDEEKRKACEIAIEAG------ADFVKTSTG-FSA-----------GGATVEDVKLMKETVGGRVGVKASGGIRTA 195 (228)
T ss_pred ---cCHHHHHHHHHHHHHhC------CCEEEcCCC-CCC-----------CCCCHHHHHHHHHHhccCceeeccCCcCCH
Confidence 23455577888889999 999987653 211 1223345566777765 447788999 99
Q ss_pred HHHHHHHHcCCCcEEEechHH
Q 025135 185 ELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~igR~~ 205 (257)
++|..+|+.| ++-++...+.
T Consensus 196 eda~~~i~ag-a~RiGtSs~v 215 (228)
T COG0274 196 EDAKAMIEAG-ATRIGTSSGV 215 (228)
T ss_pred HHHHHHHHHh-HHHhccccHH
Confidence 9999999998 7777666554
No 217
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.17 E-value=0.0024 Score=55.59 Aligned_cols=85 Identities=15% Similarity=0.118 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG 195 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~ 195 (257)
.++++.+.+.| ++++|+..-.-.. ....+...++.+.+.+.+||.+.||+ +.++++++|..|
T Consensus 38 ~~~a~~~~~~g------~~~l~i~DLd~~~----------~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~G- 100 (233)
T cd04723 38 LDVARAYKELG------FRGLYIADLDAIM----------GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRG- 100 (233)
T ss_pred HHHHHHHHHCC------CCEEEEEeCcccc----------CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcC-
Confidence 56889999999 8899887531110 12334567778888888999999999 899999999988
Q ss_pred CcEEEechHHhhCchHHHHHHcCC
Q 025135 196 ADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 196 ~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
|+-|.+|...+.| +|.+++.+--
T Consensus 101 a~~viigt~~~~~-~~~~~~~~~~ 123 (233)
T cd04723 101 ASRVIVGTETLPS-DDDEDRLAAL 123 (233)
T ss_pred CCeEEEcceeccc-hHHHHHHHhc
Confidence 9999999999999 9998887643
No 218
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.16 E-value=0.053 Score=46.38 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=40.2
Q ss_pred HHHHHHHHHHh--CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 162 AQLLRTWRRSY--QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 162 ~~~~~~ir~~~--~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
...++.+++.+ .+|+++.||++++.+.++++.| +|.|++++.+...
T Consensus 138 ~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aG-a~~vav~s~l~~~ 185 (206)
T PRK09140 138 PAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAG-AAGFGLGSALYRP 185 (206)
T ss_pred HHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCC-CeEEEEehHhccc
Confidence 35667788877 4999999999999999999998 9999999999864
No 219
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.07 E-value=0.042 Score=47.73 Aligned_cols=137 Identities=20% Similarity=0.156 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHc-CCCEEEe--cccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe-EEEEEc
Q 025135 24 IDQYRQAALNAIQA-GFDGIEI--HGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR-VGVRMS 99 (257)
Q Consensus 24 i~~f~~AA~~a~~a-GfDgVEI--h~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~-v~vrls 99 (257)
.++=++.|+.|+|+ |-|.|.| +.-.-|| .| =..|.+++.+.-+.+.+ |.-=++
T Consensus 75 A~EAv~~A~laRe~~~t~wIKLEVi~D~~~L-----~P------------------D~~etl~Aae~Lv~eGF~VlPY~~ 131 (247)
T PF05690_consen 75 AEEAVRTARLAREAFGTNWIKLEVIGDDKTL-----LP------------------DPIETLKAAEILVKEGFVVLPYCT 131 (247)
T ss_dssp HHHHHHHHHHHHHTTS-SEEEE--BS-TTT-------B-------------------HHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCCc-----CC------------------ChhHHHHHHHHHHHCCCEEeecCC
Confidence 34557888999986 6788865 4333222 12 26788999888886643 443333
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEe
Q 025135 100 PAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICS 179 (257)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~ 179 (257)
. + ..+|++|++.| +..+- |.-...+ ++. .-.+.+.++.|++..++|||+-
T Consensus 132 ~----------D-----~v~akrL~d~G------caavM---PlgsPIG---Sg~---Gi~n~~~l~~i~~~~~vPvIvD 181 (247)
T PF05690_consen 132 D----------D-----PVLAKRLEDAG------CAAVM---PLGSPIG---SGR---GIQNPYNLRIIIERADVPVIVD 181 (247)
T ss_dssp S----------------HHHHHHHHHTT-------SEBE---EBSSSTT---T------SSTHHHHHHHHHHGSSSBEEE
T ss_pred C----------C-----HHHHHHHHHCC------CCEEE---ecccccc---cCc---CCCCHHHHHHHHHhcCCcEEEe
Confidence 2 1 35899999999 44332 2111111 110 1123467788999999999999
Q ss_pred CCC-CHHHHHHHHHcCCCcEEEechHHhh--CchHHHH
Q 025135 180 GGF-TRELGIQALAEDGADLVAYGRLFIS--NPDLVLR 214 (257)
Q Consensus 180 G~i-t~~~a~~~l~~g~~D~V~igR~~ia--dP~l~~k 214 (257)
+|| +|.+|.++++-| ||.|.+-.+... ||-...+
T Consensus 182 AGiG~pSdaa~AMElG-~daVLvNTAiA~A~dPv~MA~ 218 (247)
T PF05690_consen 182 AGIGTPSDAAQAMELG-ADAVLVNTAIAKAKDPVAMAR 218 (247)
T ss_dssp S---SHHHHHHHHHTT--SEEEESHHHHTSSSHHHHHH
T ss_pred CCCCCHHHHHHHHHcC-CceeehhhHHhccCCHHHHHH
Confidence 999 999999999998 999999998863 6654433
No 220
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.06 E-value=0.012 Score=51.78 Aligned_cols=152 Identities=11% Similarity=0.097 Sum_probs=84.0
Q ss_pred ChhhHHHHHHHH-----------HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHH
Q 025135 16 QTSEIPEVIDQY-----------RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVRE 84 (257)
Q Consensus 16 t~~eI~~ii~~f-----------~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~a 84 (257)
..+-|++|++.. .+.++...++|+|.|=|...- -+...+..+.++.
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~a-----------------------v~~~~i~~~~~~~ 120 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWL-----------------------FTKGKFDLKRLKE 120 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHH-----------------------HhCCCCCHHHHHH
Confidence 345566665543 156677788999998875421 0111122456777
Q ss_pred HHHHhCCCe--EEEEEccC-CC----CCCCCCCCcHHHHH-HHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCC
Q 025135 85 VIVAIGADR--VGVRMSPA-ID----HLDATDSDPLGLGL-AVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPG 156 (257)
Q Consensus 85 iR~~vg~~~--v~vrls~~-~~----~~~~~~~~~~~~~~-~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~ 156 (257)
+.+..|++. +++-.... .+ +..++...+.-... ++++.+++. + ..+-++.-..+..
T Consensus 121 i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~------~~il~TdI~rDGt--------- 184 (253)
T TIGR02129 121 IVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-C------DEFLIHAADVEGL--------- 184 (253)
T ss_pred HHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-C------CEEEEeeecccCc---------
Confidence 788887663 44443200 11 11111111111223 566777654 2 2222222111111
Q ss_pred CchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHH--HHcCCCcEEEechHHhh
Q 025135 157 TEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQA--LAEDGADLVAYGRLFIS 207 (257)
Q Consensus 157 ~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~--l~~g~~D~V~igR~~ia 207 (257)
......+.++.+++.+++|||++||+ +.++..++ +..| ...+.+|+++..
T Consensus 185 l~G~dlel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g-~~~aIvG~Alf~ 237 (253)
T TIGR02129 185 CKGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKG-KVDLTIGSALDI 237 (253)
T ss_pred cccCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCC-CCcEEeeehHHH
Confidence 11233567788999999999999999 89998877 4445 444888988763
No 221
>PRK08999 hypothetical protein; Provisional
Probab=97.01 E-value=0.02 Score=51.71 Aligned_cols=72 Identities=13% Similarity=0.023 Sum_probs=51.0
Q ss_pred HHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEE
Q 025135 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVA 200 (257)
Q Consensus 121 ~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~ 200 (257)
+...+.| +||+-++ |-+.+..+. ...+.-...++.+++..++||++-|||+++++.++++.| +|.|+
T Consensus 240 ~~a~~~~------~dyi~~g-pvf~t~tk~-----~~~~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g-~~gva 306 (312)
T PRK08999 240 ARAQRLG------VDFAVLS-PVQPTASHP-----GAAPLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHG-AQGIA 306 (312)
T ss_pred HHHHhcC------CCEEEEC-CCcCCCCCC-----CCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhC-CCEEE
Confidence 3455678 8999875 444332211 112223456677888889999999999999999999997 99998
Q ss_pred echHH
Q 025135 201 YGRLF 205 (257)
Q Consensus 201 igR~~ 205 (257)
+-+++
T Consensus 307 ~i~~~ 311 (312)
T PRK08999 307 GIRGL 311 (312)
T ss_pred EEEEe
Confidence 87654
No 222
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.98 E-value=0.035 Score=48.64 Aligned_cols=139 Identities=13% Similarity=0.127 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCC--C-eEEEEEccC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGA--D-RVGVRMSPA 101 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~--~-~v~vrls~~ 101 (257)
+.+.+.+++..++|++||.|--.. ..+|....||...-...-..+.|+++|++... + .|..|....
T Consensus 84 ~~~~~~v~~~~~~G~~gv~iED~~-----------~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~ 152 (243)
T cd00377 84 LNVARTVRELEEAGAAGIHIEDQV-----------GPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDAL 152 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCC-----------CCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCch
Confidence 455666777888999999995432 12333333432111234455667777777654 5 678885432
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeC-
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG- 180 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G- 180 (257)
. . .....+++++-++...++| .|.+-+..+. ..+.++.+.+..+.||+++-
T Consensus 153 ~--~---~~~~~~eai~Ra~ay~~AG------AD~v~v~~~~-----------------~~~~~~~~~~~~~~Pl~~~~~ 204 (243)
T cd00377 153 L--A---GEEGLDEAIERAKAYAEAG------ADGIFVEGLK-----------------DPEEIRAFAEAPDVPLNVNMT 204 (243)
T ss_pred h--c---cCCCHHHHHHHHHHHHHcC------CCEEEeCCCC-----------------CHHHHHHHHhcCCCCEEEEec
Confidence 0 0 0134788999999999999 7777654431 12455667778889977652
Q ss_pred --C--CCHHHHHHHHHcCCCcEEEechHHh
Q 025135 181 --G--FTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 181 --~--it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
. ++.++ +-+-| +..|.++-.++
T Consensus 205 ~~~~~~~~~~---l~~lG-~~~v~~~~~~~ 230 (243)
T cd00377 205 PGGNLLTVAE---LAELG-VRRVSYGLALL 230 (243)
T ss_pred CCCCCCCHHH---HHHCC-CeEEEEChHHH
Confidence 2 34444 33345 99999986554
No 223
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.98 E-value=0.026 Score=49.08 Aligned_cols=46 Identities=15% Similarity=0.003 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 162 AQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 162 ~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
...++.+.+..++||+++||+ ++++++++++.| +|.|.+|+.+...
T Consensus 178 ~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G-~~~vivGsal~~g 224 (233)
T cd04723 178 LELLERLAARADIPVIAAGGVRSVEDLELLKKLG-ASGALVASALHDG 224 (233)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEehHHHcC
Confidence 456677888889999999999 899999999987 9999999999765
No 224
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.98 E-value=0.0062 Score=51.53 Aligned_cols=52 Identities=25% Similarity=0.169 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHH
Q 025135 162 AQLLRTWRRSYQ-GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLR 214 (257)
Q Consensus 162 ~~~~~~ir~~~~-~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k 214 (257)
...++.+++..+ +||++.||++++++.++++.| +|+|++|+.+...++..+.
T Consensus 148 ~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~G-a~gv~~gs~i~~~~d~~~~ 200 (212)
T PRK00043 148 LEGLREIRAAVGDIPIVAIGGITPENAPEVLEAG-ADGVAVVSAITGAEDPEAA 200 (212)
T ss_pred HHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEeHHhhcCCCHHHH
Confidence 456677888877 999999999999999999987 9999999999887775433
No 225
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=96.97 E-value=0.02 Score=53.23 Aligned_cols=128 Identities=17% Similarity=0.258 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC---eEEEE
Q 025135 21 PEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD---RVGVR 97 (257)
Q Consensus 21 ~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~---~v~vr 97 (257)
+.+|+.|++ ++.+-|.|-+.|.-+- |..|-+..-++++++. |.+ .|.+-
T Consensus 97 DDvVe~Fv~---ka~~nGidvfRiFDAl------------------------ND~RNl~~ai~a~kk~-G~h~q~~i~YT 148 (472)
T COG5016 97 DDVVEKFVE---KAAENGIDVFRIFDAL------------------------NDVRNLKTAIKAAKKH-GAHVQGTISYT 148 (472)
T ss_pred hHHHHHHHH---HHHhcCCcEEEechhc------------------------cchhHHHHHHHHHHhc-CceeEEEEEec
Confidence 467888876 5568899999886543 5667777778887764 433 36777
Q ss_pred EccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEE
Q 025135 98 MSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFI 177 (257)
Q Consensus 98 ls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi 177 (257)
+|+. .+.+.+.++++.|.+.| +|.|.+-.- +|-. .+....+.++.+|+.+++||.
T Consensus 149 ~sPv---------Ht~e~yv~~akel~~~g------~DSIciKDm---------aGll-tP~~ayelVk~iK~~~~~pv~ 203 (472)
T COG5016 149 TSPV---------HTLEYYVELAKELLEMG------VDSICIKDM---------AGLL-TPYEAYELVKAIKKELPVPVE 203 (472)
T ss_pred cCCc---------ccHHHHHHHHHHHHHcC------CCEEEeecc---------cccC-ChHHHHHHHHHHHHhcCCeeE
Confidence 7763 57899999999999999 888876431 1111 122334677889999999976
Q ss_pred Ee----CCCCHHHHHHHHHcCCCcEEEec
Q 025135 178 CS----GGFTRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 178 ~~----G~it~~~a~~~l~~g~~D~V~ig 202 (257)
+- .|+..-...++++.| +|+|=-+
T Consensus 204 lHtH~TsG~a~m~ylkAvEAG-vD~iDTA 231 (472)
T COG5016 204 LHTHATSGMAEMTYLKAVEAG-VDGIDTA 231 (472)
T ss_pred EecccccchHHHHHHHHHHhC-cchhhhh
Confidence 53 334455556888888 8877544
No 226
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.92 E-value=0.055 Score=48.04 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=89.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD- 92 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~- 92 (257)
++..+.+++.++ ...+.|.|||-+.+.-|- |. -=+.+.|.+++..+++ +++..
T Consensus 14 ~iD~~~~~~~i~-------~l~~~Gv~gi~~~GstGE----~~-----------~ls~~Er~~l~~~~~~----~~~~~~ 67 (281)
T cd00408 14 EVDLDALRRLVE-------FLIEAGVDGLVVLGTTGE----AP-----------TLTDEERKEVIEAVVE----AVAGRV 67 (281)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECCCCcc----cc-----------cCCHHHHHHHHHHHHH----HhCCCC
Confidence 445555555554 456679999998775531 11 1235667666554444 44433
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY 172 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 172 (257)
+|.+=++. .+.++++++++..++.| +|.+-+..|.+... .........+.|.+..
T Consensus 68 ~vi~gv~~----------~~~~~~i~~a~~a~~~G------ad~v~v~pP~y~~~---------~~~~~~~~~~~ia~~~ 122 (281)
T cd00408 68 PVIAGVGA----------NSTREAIELARHAEEAG------ADGVLVVPPYYNKP---------SQEGIVAHFKAVADAS 122 (281)
T ss_pred eEEEecCC----------ccHHHHHHHHHHHHHcC------CCEEEECCCcCCCC---------CHHHHHHHHHHHHhcC
Confidence 66655543 34678999999999999 88888877655331 1223344556677778
Q ss_pred CCcEEE------eCC-CCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 173 QGTFIC------SGG-FTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 173 ~~pvi~------~G~-it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
++||+. +|. ++++...++.+...+-.|=.+ ..|.....++..
T Consensus 123 ~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s---~~d~~~~~~~~~ 171 (281)
T cd00408 123 DLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDS---SGDLDRLTRLIA 171 (281)
T ss_pred CCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeC---CCCHHHHHHHHH
Confidence 889763 343 378888887753333232222 245555555543
No 227
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.92 E-value=0.029 Score=56.94 Aligned_cols=73 Identities=8% Similarity=-0.002 Sum_probs=52.1
Q ss_pred eeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC---CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCch
Q 025135 134 LTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ---GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPD 210 (257)
Q Consensus 134 vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~---~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~ 210 (257)
+||+-+. |-+.+..+. ....+.-+..++++++.++ +||++-|||+++++.++++.| +|+|++-+++...+|
T Consensus 129 aDYi~~G-pvf~T~tK~----~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~G-a~giAvisai~~a~d 202 (755)
T PRK09517 129 PDVIGIG-PVASTATKP----DAPPALGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATG-IDGLCVVSAIMAAAN 202 (755)
T ss_pred CCEEEEC-CccccCCCC----CCCCCCCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhCCCC
Confidence 8999874 333322110 0011122456677777777 999999999999999999998 999999999997776
Q ss_pred HH
Q 025135 211 LV 212 (257)
Q Consensus 211 l~ 212 (257)
..
T Consensus 203 ~~ 204 (755)
T PRK09517 203 PA 204 (755)
T ss_pred HH
Confidence 43
No 228
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.91 E-value=0.0051 Score=53.42 Aligned_cols=47 Identities=21% Similarity=0.368 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchH
Q 025135 164 LLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDL 211 (257)
Q Consensus 164 ~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l 211 (257)
..+..++..+.|+|.+||| ++++|.++++.| +|.|.+|-.+-.||++
T Consensus 173 v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aG-AD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 173 VIAAVKKLSDIPLIVGGGIRSPEQAREMAEAG-ADTIVVGNAIEEDPDL 220 (230)
T ss_dssp HHHHHHHSSSSEEEEESS--SHHHHHHHHCTT-SSEEEESCHHHHHH-H
T ss_pred HHHHHHhcCCccEEEeCCcCCHHHHHHHHHCC-CCEEEECCEEEEcchH
Confidence 3344555567899999999 899999999998 9999999999999983
No 229
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=96.90 E-value=0.014 Score=54.13 Aligned_cols=46 Identities=30% Similarity=0.274 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 161 EAQLLRTWRRSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 161 ~~~~~~~ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
....+..+++.++ ++|++.||+ +..+..++|.-| ||+|++||+++.
T Consensus 259 t~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALG-A~~v~igrp~L~ 307 (360)
T COG1304 259 TADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALG-ADAVGIGRPFLY 307 (360)
T ss_pred hHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhC-CchhhhhHHHHH
Confidence 3467778899987 789999999 899999999998 999999999984
No 230
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.90 E-value=0.065 Score=46.17 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=42.6
Q ss_pred HHHHHHHHHh-CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 163 QLLRTWRRSY-QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 163 ~~~~~ir~~~-~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
...+.+|+.. ++||+..|++ +++++..+++.| +|.|.+|++++.-+++.+.+.
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~g-adGvlVGsa~l~~~~~~~~~~ 216 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELG-ADGVLLASGVVKAKDPEAALR 216 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCC-CCEEEEehHHhCCcCHHHHHH
Confidence 3445577644 6899999999 899999988776 999999999998888766553
No 231
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=96.88 E-value=0.019 Score=54.50 Aligned_cols=109 Identities=9% Similarity=0.050 Sum_probs=75.5
Q ss_pred hhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCC--CCC-------CCCcHHHHHHHHHH-HHhcCCccCCceeEEEe
Q 025135 71 IENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHL--DAT-------DSDPLGLGLAVIQG-LNKLQIDQGAKLTYLHV 139 (257)
Q Consensus 71 ~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~--~~~-------~~~~~~~~~~l~~~-L~~~G~~~~~~vd~i~v 139 (257)
.+..++++.+.+++++.++|++ .|++..+..+.|+ +.. ...+.++++++++. +++.+ +.||+
T Consensus 212 ~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~~~~~~~~~s~~eai~~~~~lle~~~------i~~iE- 284 (425)
T TIGR01060 212 NEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYVYKGENKQLTSEEMIEYYKELVEKYP------IVSIE- 284 (425)
T ss_pred cHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceeeecCcccccCHHHHHHHHHHHHhcCC------cEEEE-
Confidence 3566778888888888889987 6888876433332 110 01256778888885 56777 77776
Q ss_pred eCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCC-C-HHHHHHHHHcCCCcEEEe
Q 025135 140 TQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGF-T-RELGIQALAEDGADLVAY 201 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~i-t-~~~a~~~l~~g~~D~V~i 201 (257)
+|- ....+...+++++.+ ++||++...+ + ++++.++|+.+.||+|.+
T Consensus 285 -dPl--------------~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~i 335 (425)
T TIGR01060 285 -DGL--------------SEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILI 335 (425)
T ss_pred -cCC--------------CcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEe
Confidence 552 122345667788888 6888776654 4 999999999999999965
No 232
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.88 E-value=0.031 Score=49.74 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=70.6
Q ss_pred cCCcCCCCCCc--hhhHhhHHH---HHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCc
Q 025135 60 INDRTDEYGGS--IENRCRFLM---QLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAK 133 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~~~---eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~ 133 (257)
.|+|.+-+..- .+|...+.- +-++.+|+.+++. .|++-.+ +.+++.+ ..+.|
T Consensus 144 ~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~------------t~eea~~----A~~~g------ 201 (269)
T cd01568 144 DNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVE------------TLEEAEE----ALEAG------ 201 (269)
T ss_pred ccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecC------------CHHHHHH----HHHcC------
Confidence 46777766643 445555432 4588899988854 5555432 3444333 33568
Q ss_pred eeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 134 LTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 134 vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
+|||-+..- .........+.+++..++||.+.||||++.+.++.+.| +|+|++|....+-|
T Consensus 202 aD~I~ld~~--------------~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~G-ad~Isvgal~~s~~ 262 (269)
T cd01568 202 ADIIMLDNM--------------SPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETG-VDVISTGALTHSAP 262 (269)
T ss_pred CCEEEECCC--------------CHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcC-CCEEEEcHHHcCCC
Confidence 898876321 01111122222332236789999999999999999988 99999987666554
No 233
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.87 E-value=0.2 Score=44.40 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchh--------h--HhhHHHHHHHHHHHHhCCCeE
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIE--------N--RCRFLMQLVREVIVAIGADRV 94 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~e--------n--R~r~~~eiv~aiR~~vg~~~v 94 (257)
+...+.++.+.++|.|.+||-. |.++---| |-.+. + ..+-.+|+++.+|+.-..-|+
T Consensus 31 e~s~e~i~~L~~~GaD~iELGv-----------PfSDPvAD--GP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pi 97 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGV-----------PFSDPVAD--GPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPI 97 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecC-----------CCCCcCcc--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCE
Confidence 4566677777899999999844 33322222 21111 1 134578999999976332243
Q ss_pred EE--EEccC-----C---------CCCCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCccc----------C
Q 025135 95 GV--RMSPA-----I---------DHLDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTA----------Y 147 (257)
Q Consensus 95 ~v--rls~~-----~---------~~~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~----------~ 147 (257)
.+ =.++- + +.++. -...+.++...+.+..++.| +++|-+..|.... .
T Consensus 98 vlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~g------i~~I~lvaPtt~~~rl~~i~~~a~ 171 (265)
T COG0159 98 VLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHG------IDPIFLVAPTTPDERLKKIAEAAS 171 (265)
T ss_pred EEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcC------CcEEEEeCCCCCHHHHHHHHHhCC
Confidence 22 22220 0 11110 12346777778888888888 7777666554320 0
Q ss_pred CCcC----C---CCCCC-chhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 148 GQTE----S---GRPGT-EDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 148 ~~~~----~---~~~~~-~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
++.+ . |.... .....+.++.+|+..++||+++=|| +++++.++++- +|.|.+|.+++
T Consensus 172 GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAiV 237 (265)
T COG0159 172 GFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAIV 237 (265)
T ss_pred CcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHHH
Confidence 1100 0 10001 1123467788999999999887788 89999999987 99999998875
No 234
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.83 E-value=0.0091 Score=58.14 Aligned_cols=90 Identities=11% Similarity=-0.004 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CH----------
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TR---------- 184 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~---------- 184 (257)
-.++|+...+.| +|.||+..-.-.... ........+.++++.+.+.+|+-++||| |.
T Consensus 269 Pve~a~~y~~~G------adel~~~Di~~~~~~------~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~ 336 (538)
T PLN02617 269 PVELAGQYYKDG------ADEVAFLNITGFRDF------PLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSS 336 (538)
T ss_pred HHHHHHHHHHcC------CCEEEEEECCCCcCC------cccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccch
Confidence 356889999999 777776542110000 0012234567788888889999999999 75
Q ss_pred -HHHHHHHHcCCCcEEEechHHhhC------------chHHHHHHcC
Q 025135 185 -ELGIQALAEDGADLVAYGRLFISN------------PDLVLRFKLN 218 (257)
Q Consensus 185 -~~a~~~l~~g~~D~V~igR~~iad------------P~l~~k~~~g 218 (257)
++++++|..| ||-|+++..++.| |++++++.+.
T Consensus 337 ~e~~~~~l~~G-adkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~ 382 (538)
T PLN02617 337 LEVASEYFRSG-ADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRV 382 (538)
T ss_pred HHHHHHHHHcC-CCEEEEChHHHhChhhhhccccccCHHHHHHHHHH
Confidence 6799999998 9999999999997 5999888753
No 235
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.83 E-value=0.0073 Score=52.20 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHH--c
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALA--E 193 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~--~ 193 (257)
.++++.+.+.| ++++|+..-.-. . ..+.+...++++.+. .|+.+.||+ |.+++++++. +
T Consensus 39 ~~~a~~~~~~g------~~~l~ivDLd~~---------~-~~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~ 100 (221)
T TIGR00734 39 DDAAKVIEEIG------ARFIYIADLDRI---------V-GLGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLE 100 (221)
T ss_pred HHHHHHHHHcC------CCEEEEEEcccc---------c-CCcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhc
Confidence 45788888999 889988752111 0 123345666777765 489999999 8999998865 4
Q ss_pred CCCcEEEechHHhhCchHHHHHH
Q 025135 194 DGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 194 g~~D~V~igR~~iadP~l~~k~~ 216 (257)
+ +|-|.+|...+.||++++++.
T Consensus 101 ~-a~rvvigT~a~~~p~~l~~~~ 122 (221)
T TIGR00734 101 F-ASRVVVATETLDITELLRECY 122 (221)
T ss_pred c-ceEEeecChhhCCHHHHHHhh
Confidence 6 999999999999999999885
No 236
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=96.83 E-value=0.039 Score=50.35 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=70.2
Q ss_pred cCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHH
Q 025135 37 AGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLG 116 (257)
Q Consensus 37 aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~ 116 (257)
.||..+.|..|. ++ ...-.+.|++||++++ + +.+|+-.+.. .+.+++
T Consensus 127 ~Gf~~~KvKvG~--------------------~~----~~~d~~~i~~vr~~~~-~-~~l~vDaN~~-------w~~~~A 173 (322)
T PRK05105 127 PGEKVAKVKVGL--------------------YE----AVRDGMLVNLLLEAIP-D-LKLRLDANRG-------WTLEKA 173 (322)
T ss_pred CCCCEEEEEECC--------------------CC----HHHHHHHHHHHHHhCC-C-CeEEEECCCC-------CCHHHH
Confidence 799999988653 11 2235688999999884 3 3445443212 357889
Q ss_pred HHHHHHHHh---cCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHH
Q 025135 117 LAVIQGLNK---LQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALA 192 (257)
Q Consensus 117 ~~l~~~L~~---~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~ 192 (257)
.++++.|++ .+ +.|++ +|-. . ......+++..++||.+...+ +++ ....+
T Consensus 174 ~~~~~~l~~~~~~~------i~~iE--qP~~-------------~---~~~~~~l~~~~~~PIa~DEs~~~~~-~~~~~- 227 (322)
T PRK05105 174 QQFAKYVPPDYRHR------IAFLE--EPCK-------------T---PDDSRAFARATGIAIAWDESLREPD-FQFEA- 227 (322)
T ss_pred HHHHHHhhhhcCCC------ccEEE--CCCC-------------C---HHHHHHHHHhCCCCEEECCCCCchh-hhhhh-
Confidence 999999998 77 88887 5510 1 123466888889999887777 664 33444
Q ss_pred cCCCcEEEe
Q 025135 193 EDGADLVAY 201 (257)
Q Consensus 193 ~g~~D~V~i 201 (257)
.+.+|+|.+
T Consensus 228 ~~~~d~i~i 236 (322)
T PRK05105 228 EPGVRAIVI 236 (322)
T ss_pred cCCCCEEEE
Confidence 556887643
No 237
>PRK08185 hypothetical protein; Provisional
Probab=96.83 E-value=0.06 Score=48.32 Aligned_cols=120 Identities=8% Similarity=0.072 Sum_probs=70.0
Q ss_pred chhhHhhHHHHHHHHHHHHhCCC---eEEEEEccCCCCCCCCC----CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCC
Q 025135 70 SIENRCRFLMQLVREVIVAIGAD---RVGVRMSPAIDHLDATD----SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQP 142 (257)
Q Consensus 70 s~enR~r~~~eiv~aiR~~vg~~---~v~vrls~~~~~~~~~~----~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~ 142 (257)
+++...+...++++-.++. |-. .||. ++..++...... ..+.+++.+++ ++.| +|++.++-+
T Consensus 103 ~~eeNi~~t~~vv~~a~~~-gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~---~~Tg------vD~LAvaiG 171 (283)
T PRK08185 103 PYEENVALTKEVVELAHKV-GVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFV---SRTG------VDTLAVAIG 171 (283)
T ss_pred CHHHHHHHHHHHHHHHHHc-CCeEEEEEee-ccCcccccccccccccCCCHHHHHHHH---HhhC------CCEEEeccC
Confidence 4677888999999888753 321 2444 443221111111 12345544433 3448 899888544
Q ss_pred CcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC--CHHHHHHHHHcCCCcEEEechHH
Q 025135 143 RYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF--TRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i--t~~~a~~~l~~g~~D~V~igR~~ 205 (257)
+....+.... .+....+.++.|++.+++|+++=|+. ..++..++++.| +-=|=++..+
T Consensus 172 t~HG~y~~~~----kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~G-I~KiNi~T~l 231 (283)
T PRK08185 172 TAHGIYPKDK----KPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLG-VGKINISSDM 231 (283)
T ss_pred cccCCcCCCC----CCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCC-CeEEEeChHH
Confidence 4333221100 01123567888999999998888886 567788999988 5555565554
No 238
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.81 E-value=0.023 Score=50.57 Aligned_cols=106 Identities=17% Similarity=0.076 Sum_probs=72.0
Q ss_pred cCCcCCCCCCc--hhhHhhHH---HHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCc
Q 025135 60 INDRTDEYGGS--IENRCRFL---MQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAK 133 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~~---~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~ 133 (257)
.|+|-+-+..- ..|...+. .+-++.+|+.+++. .|++-.+ +.+++ +...+.|
T Consensus 145 ~~HR~~L~d~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~------------s~eea----~~A~~~g------ 202 (268)
T cd01572 145 DNHRFGLSDAVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVE------------TLEQL----KEALEAG------ 202 (268)
T ss_pred ccccCCCcceeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEEC------------CHHHH----HHHHHcC------
Confidence 36777666643 44555554 45688899999865 5666554 24443 3345688
Q ss_pred eeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 134 LTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 134 vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+|||-+.. + . .+.++++.+.. ++|+.+.|||+++.+.++.+.| +|+|+++....
T Consensus 203 aDyI~ld~--~-------------~---~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~G-vd~Iav~sl~~ 258 (268)
T cd01572 203 ADIIMLDN--M-------------S---PEELREAVALLKGRVLLEASGGITLENIRAYAETG-VDYISVGALTH 258 (268)
T ss_pred CCEEEECC--c-------------C---HHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEEeeec
Confidence 89987632 1 1 23344444444 5899999999999999999887 99999998665
No 239
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=96.81 E-value=0.026 Score=61.96 Aligned_cols=119 Identities=14% Similarity=0.091 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDH 104 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~ 104 (257)
+++++.|+.+.+.||..++|..|.+ .++ ..-.++|++||+++|++ +.+|+-....
T Consensus 1092 ~~~~~~a~~~~~~Gf~~~KlKvG~~-------------------~~~----~~D~~~i~alRe~~G~~-~~LrlDAN~~- 1146 (1655)
T PLN02980 1092 LEVAYVARKLVEEGFSAIKLKVGRR-------------------VSP----IQDAAVIQEVRKAVGYQ-IELRADANRN- 1146 (1655)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCC-------------------CCH----HHHHHHHHHHHHHcCCC-CeEEEECCCC-
Confidence 4455667777789999999986641 011 23468899999999985 3444443222
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T 183 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t 183 (257)
.+.+++.++++.|++.+ +.||+ +|-. . ...+..+++..++||++...+ +
T Consensus 1147 ------ws~~~A~~~~~~L~~~~------i~~iE--qPl~--------------~--~~~l~~l~~~~~iPIA~DEs~~~ 1196 (1655)
T PLN02980 1147 ------WTYEEAIEFGSLVKSCN------LKYIE--EPVQ--------------D--EDDLIKFCEETGLPVALDETIDK 1196 (1655)
T ss_pred ------CCHHHHHHHHHHHhhcC------CCEEE--CCCC--------------C--HHHHHHHHHhCCCCEEeCCCcCC
Confidence 35788999999999998 88887 5521 1 133455777777887776665 4
Q ss_pred HH-----HHHHHHHcCCCcEE
Q 025135 184 RE-----LGIQALAEDGADLV 199 (257)
Q Consensus 184 ~~-----~a~~~l~~g~~D~V 199 (257)
.. ...++++.+ ++.|
T Consensus 1197 ~~~~~~~~~~~~i~~~-~~~i 1216 (1655)
T PLN02980 1197 FEECPLRMLTKYTHPG-IVAV 1216 (1655)
T ss_pred cccchHHHHHHHHHCC-CeEE
Confidence 33 244555555 4433
No 240
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.79 E-value=0.031 Score=52.00 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHhCCC-eEEEEEccC--CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCC
Q 025135 76 RFLMQLVREVIVAIGAD-RVGVRMSPA--IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTES 152 (257)
Q Consensus 76 r~~~eiv~aiR~~vg~~-~v~vrls~~--~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~ 152 (257)
+...+.++++| ++|++ .|.+..+.. ..|+ .+.+++.++++.|++.+-. -+.|++ +|-...
T Consensus 177 ~~~~~~v~avr-~~G~~~~l~vDaN~~w~~~~~-----~~~~~A~~~~~~Le~~~~~---~~~~iE--qP~~~~------ 239 (369)
T cd03314 177 KWLSDRIRKLG-RPGYHPILHIDVYGTIGQAFD-----PDPDRAADYLATLEEAAAP---FPLRIE--GPMDAG------ 239 (369)
T ss_pred HHHHHHHHHHh-hcCCCCEEEEEcCCccccccC-----CCHHHHHHHHHHHHHhcCC---CcEEEe--cCCCCC------
Confidence 34568899999 88886 465555421 0011 1567899999999986200 033454 441100
Q ss_pred CCCCCchhHHHHHHHHHHH-----hCCcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 025135 153 GRPGTEDEEAQLLRTWRRS-----YQGTFICSGGF-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 153 ~~~~~~~~~~~~~~~ir~~-----~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~i 201 (257)
..+...+..+.+++. .++||++...+ +++++.++++.+.+|+|.+
T Consensus 240 ----d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~ 290 (369)
T cd03314 240 ----SREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQI 290 (369)
T ss_pred ----cchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEe
Confidence 000223556778887 48999888777 8999999999999999986
No 241
>PRK14057 epimerase; Provisional
Probab=96.76 E-value=0.093 Score=46.30 Aligned_cols=125 Identities=15% Similarity=0.225 Sum_probs=76.4
Q ss_pred HHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCC-------C-eEEEEEccCCCCCC
Q 025135 35 IQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGA-------D-RVGVRMSPAIDHLD 106 (257)
Q Consensus 35 ~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~-------~-~v~vrls~~~~~~~ 106 (257)
.++|.|-|-+|.=. ..-+.++++.||+. |. . ..|+=+++.
T Consensus 95 ~~aGad~It~H~Ea--------------------------~~~~~~~l~~Ir~~-G~k~~~~~~~~kaGlAlnP~----- 142 (254)
T PRK14057 95 VKAGAHCITLQAEG--------------------------DIHLHHTLSWLGQQ-TVPVIGGEMPVIRGISLCPA----- 142 (254)
T ss_pred HHhCCCEEEEeecc--------------------------ccCHHHHHHHHHHc-CCCcccccccceeEEEECCC-----
Confidence 45899999999742 01256678888876 32 1 368888874
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEe--eCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh---C--CcEEEe
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHV--TQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY---Q--GTFICS 179 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~--~pvi~~ 179 (257)
.+.+....++. . +|+|-+ ++|.+.+..+ .+....-++++|+.. + ..|-+=
T Consensus 143 ----Tp~e~i~~~l~---~--------vD~VLvMtV~PGfgGQ~F--------i~~~l~KI~~lr~~~~~~~~~~~IeVD 199 (254)
T PRK14057 143 ----TPLDVIIPILS---D--------VEVIQLLAVNPGYGSKMR--------SSDLHERVAQLLCLLGDKREGKIIVID 199 (254)
T ss_pred ----CCHHHHHHHHH---h--------CCEEEEEEECCCCCchhc--------cHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 35555444433 2 444432 2565543321 122222233333332 2 335566
Q ss_pred CCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 180 GGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 180 G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
||++.+.+.++.+.| +|.+..|+++..+++.-+.+
T Consensus 200 GGI~~~ti~~l~~aG-ad~~V~GSalF~~~d~~~~i 234 (254)
T PRK14057 200 GSLTQDQLPSLIAQG-IDRVVSGSALFRDDRLVENT 234 (254)
T ss_pred CCCCHHHHHHHHHCC-CCEEEEChHhhCCCCHHHHH
Confidence 999999999999998 99999999999887754443
No 242
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.75 E-value=0.028 Score=49.62 Aligned_cols=124 Identities=18% Similarity=0.086 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
+.-|+.|.+.|+|-|++-.--|.|.+ .+...+.+-|++|+++++. .+.+|+=....+-
T Consensus 86 ~~Ea~~Ai~~GAdEiD~Vinig~lk~-------------------g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt~~L-- 143 (257)
T PRK05283 86 LAETRAAIAYGADEVDVVFPYRALMA-------------------GNEQVGFELVKACKEACAA-NVLLKVIIETGEL-- 143 (257)
T ss_pred HHHHHHHHHcCCCEEeeeccHHHHhC-------------------CcHHHHHHHHHHHHHHhCC-CceEEEEEecccc--
Confidence 34456678899999998766655432 2345788889999998873 2333433221111
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-------CCcEEEeC
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-------QGTFICSG 180 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-------~~pvi~~G 180 (257)
+..++....++...++| +|||-.+.+ +.. .....+.++.+++.+ ++-|=++|
T Consensus 144 ---~~ee~i~~a~~~a~~aG------ADFVKTSTG-f~~-----------~gAt~edv~lm~~~i~~~~~~~~vgIKAsG 202 (257)
T PRK05283 144 ---KDEALIRKASEIAIKAG------ADFIKTSTG-KVP-----------VNATLEAARIMLEVIRDMGVAKTVGFKPAG 202 (257)
T ss_pred ---CCHHHHHHHHHHHHHhC------CCEEEcCCC-CCC-----------CCCCHHHHHHHHHHHHhcccCCCeeEEccC
Confidence 12223567888889999 999987654 211 111223333344443 24477889
Q ss_pred CC-CHHHHHHHHHcC
Q 025135 181 GF-TRELGIQALAED 194 (257)
Q Consensus 181 ~i-t~~~a~~~l~~g 194 (257)
|| |.++|.++|+.|
T Consensus 203 GIrt~~~A~~~i~ag 217 (257)
T PRK05283 203 GVRTAEDAAQYLALA 217 (257)
T ss_pred CCCCHHHHHHHHHHH
Confidence 99 999999999887
No 243
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.72 E-value=0.15 Score=43.89 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=39.1
Q ss_pred HHHHHHHHHhC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhh
Q 025135 163 QLLRTWRRSYQ-GTFICSGGFTRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 163 ~~~~~ir~~~~-~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
..++.++..++ +|++.+||++.+.+.+.++.| +|.|++|..+..
T Consensus 144 ~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aG-a~~vavgs~l~~ 188 (213)
T PRK06552 144 SFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAG-ADAVGIGGELNK 188 (213)
T ss_pred HHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCC-CcEEEEchHHhC
Confidence 45677888877 899999999999999999998 999999999964
No 244
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.71 E-value=0.14 Score=44.51 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=76.4
Q ss_pred HHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCc
Q 025135 34 AIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDP 112 (257)
Q Consensus 34 a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~ 112 (257)
..++|+|.|-+|.=. ..-+.++++.||+. |.. ..|+=|++. .+
T Consensus 87 ~~~aGad~It~H~Ea--------------------------~~~~~~~l~~Ik~~-g~~~kaGlalnP~---------Tp 130 (228)
T PRK08091 87 CVAAGADIVTLQVEQ--------------------------THDLALTIEWLAKQ-KTTVLIGLCLCPE---------TP 130 (228)
T ss_pred HHHhCCCEEEEcccC--------------------------cccHHHHHHHHHHC-CCCceEEEEECCC---------CC
Confidence 356899999999642 01256778888875 321 468888874 35
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEe--eCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh---C--CcEEEeCCCCHH
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHV--TQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY---Q--GTFICSGGFTRE 185 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~--~pvi~~G~it~~ 185 (257)
.+....++. . +|+|.+ ++|.+.+.. ..+....-++++|+.. + ..|-+=||++.+
T Consensus 131 ~~~i~~~l~---~--------vD~VLiMtV~PGfgGQ~--------f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ 191 (228)
T PRK08091 131 ISLLEPYLD---Q--------IDLIQILTLDPRTGTKA--------PSDLILDRVIQVENRLGNRRVEKLISIDGSMTLE 191 (228)
T ss_pred HHHHHHHHh---h--------cCEEEEEEECCCCCCcc--------ccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHH
Confidence 555444433 3 344432 245554332 1122222333333322 2 335555999999
Q ss_pred HHHHHHHcCCCcEEEechHHhhCchHHHH
Q 025135 186 LGIQALAEDGADLVAYGRLFISNPDLVLR 214 (257)
Q Consensus 186 ~a~~~l~~g~~D~V~igR~~iadP~l~~k 214 (257)
.+.++.+.| +|.+..|+++..+++.-+.
T Consensus 192 ti~~l~~aG-aD~~V~GSalF~~~d~~~~ 219 (228)
T PRK08091 192 LASYLKQHQ-IDWVVSGSALFSQGELKTT 219 (228)
T ss_pred HHHHHHHCC-CCEEEEChhhhCCCCHHHH
Confidence 999999998 9999999999888775433
No 245
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.1 Score=45.24 Aligned_cols=137 Identities=19% Similarity=0.153 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHc-CCCEE--EecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe-EEEEEc
Q 025135 24 IDQYRQAALNAIQA-GFDGI--EIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR-VGVRMS 99 (257)
Q Consensus 24 i~~f~~AA~~a~~a-GfDgV--EIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~-v~vrls 99 (257)
.++=+..|+.|+++ +-|.| |+++-+-||+ |. ..|.+++.+.-|.+.+ |.-=.+
T Consensus 82 aeEAv~tArlARE~~~t~wiKlEVi~d~~tLl-----PD------------------~~etl~Aae~Lv~eGF~VlPY~~ 138 (262)
T COG2022 82 AEEAVRTARLAREALGTNWIKLEVIGDEKTLL-----PD------------------PIETLKAAEQLVKEGFVVLPYTT 138 (262)
T ss_pred HHHHHHHHHHHHHHccCCeEEEEEecCCcccC-----CC------------------hHHHHHHHHHHHhCCCEEeeccC
Confidence 34557888999886 46777 5566665553 21 4577888887787643 322111
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEe
Q 025135 100 PAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICS 179 (257)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~ 179 (257)
. + .-+|++|++.| +..+ -|.....+ ++ ....+.+.++.|++..++|||+-
T Consensus 139 d----------D-----~v~arrLee~G------caav---MPl~aPIG---Sg---~G~~n~~~l~iiie~a~VPviVD 188 (262)
T COG2022 139 D----------D-----PVLARRLEEAG------CAAV---MPLGAPIG---SG---LGLQNPYNLEIIIEEADVPVIVD 188 (262)
T ss_pred C----------C-----HHHHHHHHhcC------ceEe---cccccccc---CC---cCcCCHHHHHHHHHhCCCCEEEe
Confidence 1 1 24899999999 4433 23222221 11 11234567788899999999999
Q ss_pred CCC-CHHHHHHHHHcCCCcEEEechHHh--hCchHHHH
Q 025135 180 GGF-TRELGIQALAEDGADLVAYGRLFI--SNPDLVLR 214 (257)
Q Consensus 180 G~i-t~~~a~~~l~~g~~D~V~igR~~i--adP~l~~k 214 (257)
-|| +|.+|..+++=| ||.|.+-.+.- .||-...+
T Consensus 189 AGiG~pSdAa~aMElG-~DaVL~NTAiA~A~DPv~MA~ 225 (262)
T COG2022 189 AGIGTPSDAAQAMELG-ADAVLLNTAIARAKDPVAMAR 225 (262)
T ss_pred CCCCChhHHHHHHhcc-cceeehhhHhhccCChHHHHH
Confidence 999 999999999998 99999988776 47754443
No 246
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.71 E-value=0.029 Score=49.84 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=69.8
Q ss_pred cCCcCCCCCCc--hhhHhhH---HHHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCc
Q 025135 60 INDRTDEYGGS--IENRCRF---LMQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAK 133 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~---~~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~ 133 (257)
.|+|.+-++.- ..|...+ ..+-++.+|+.++++ +|++-.+ +.+++ +...+.|
T Consensus 141 ~~HR~~L~d~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~------------t~eea----~~A~~~g------ 198 (265)
T TIGR00078 141 DNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVE------------SLEEA----EEAAEAG------ 198 (265)
T ss_pred cccCCCcccceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeC------------CHHHH----HHHHHcC------
Confidence 46677666643 3455444 345688899999865 5666543 34443 3345788
Q ss_pred eeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC--CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 134 LTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ--GTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 134 vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+|||-+..- .+ +.++++.+.++ +|+.+.|||+++.+.++.+.| +|+|++|...-
T Consensus 199 aDyI~ld~~---------------~~---e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~G-vd~Isvgait~ 254 (265)
T TIGR00078 199 ADIIMLDNM---------------KP---EEIKEAVQLLKGRVLLEASGGITLDNLEEYAETG-VDVISSGALTH 254 (265)
T ss_pred CCEEEECCC---------------CH---HHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcC-CCEEEeCHHHc
Confidence 899876321 11 23333333333 799999999999999999988 99999966544
No 247
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=96.69 E-value=0.069 Score=50.38 Aligned_cols=137 Identities=10% Similarity=0.083 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcC-CCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccC
Q 025135 24 IDQYRQAALNAIQAG-FDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPA 101 (257)
Q Consensus 24 i~~f~~AA~~a~~aG-fDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~ 101 (257)
.++++..++...+.| |.-+++ .|.. . -+ +..+.+-+.+.|+++|+. |.+ .|-+-.+.+
T Consensus 179 ~d~m~~~a~~~~~~G~~~~~Kk-vG~~--~----------~k------~~~~~~~~~~ri~~lr~~-g~~~~l~vDaN~~ 238 (408)
T TIGR01502 179 VDKMILKEVDVLPHGLINSVEE-LGLD--G----------EK------LLEYVKWLRDRIIKLGRE-GYAPIFHIDVYGT 238 (408)
T ss_pred HHHHHHHHHHHHhccCccceee-ecCC--H----------HH------hhhhHHHHHHHHHHhhcc-CCCCeEEEEcCCC
Confidence 466667777777776 877774 3320 0 00 112334444667777743 544 344444321
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhc----CCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHH-----h
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLNKL----QIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRS-----Y 172 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~~~----G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-----~ 172 (257)
-+.....+.+++.++.+.|++. + + +++ +|-... ......+.++.+++. .
T Consensus 239 ---~~~~~~~~~~~ai~~l~~l~~~~~~~~------~-~iE--qPv~~~----------d~~~~~e~la~Lr~~~~~~~~ 296 (408)
T TIGR01502 239 ---IGEAFGVDIKAMADYIQTLAEAAKPFH------L-RIE--GPMDVG----------SRQAQIEAMADLRAELDGRGV 296 (408)
T ss_pred ---cccccCCCHHHHHHHHHHHHHhCccCC------e-EEe--cCCCCC----------cchhhHHHHHHHHHHhhcCCC
Confidence 0000123577888999999873 3 4 454 542100 001224566778877 4
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 025135 173 QGTFICSGGF-TRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 173 ~~pvi~~G~i-t~~~a~~~l~~g~~D~V~ig 202 (257)
++||++...+ +++++.++++.+.+|+|.+=
T Consensus 297 ~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK 327 (408)
T TIGR01502 297 DAEIVADEWCNTVEDVKFFTDAKAGHMVQIK 327 (408)
T ss_pred CceEEecCCCCCHHHHHHHHHhCCCCEEEeC
Confidence 8999998887 89999999999999999873
No 248
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=96.66 E-value=0.13 Score=46.87 Aligned_cols=134 Identities=16% Similarity=0.104 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHc-CCCEEEe--cccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe-EEEEEcc
Q 025135 25 DQYRQAALNAIQA-GFDGIEI--HGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR-VGVRMSP 100 (257)
Q Consensus 25 ~~f~~AA~~a~~a-GfDgVEI--h~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~-v~vrls~ 100 (257)
++=++.|+.|+++ |-|.|.| ++-+-||+ .=+.+.|++.++-+.+.. +.+=.+.
T Consensus 150 ~eAv~~a~lare~~~~~~iKlEvi~e~~~ll-----------------------pd~~~~v~aa~~L~~~Gf~v~~yc~~ 206 (326)
T PRK11840 150 EEAVRTLRLAREAGGWDLVKLEVLGDAKTLY-----------------------PDMVETLKATEILVKEGFQVMVYCSD 206 (326)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCCcc-----------------------cCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3456778888886 5688754 44432221 125678888888876653 3333331
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeC
Q 025135 101 AIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG 180 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G 180 (257)
+ ...|++|++.| +..+ .|.-...+ ++.... ..+.++.+.+..++||++.+
T Consensus 207 -----------d----~~~a~~l~~~g------~~av---mPl~~pIG---sg~gv~---~p~~i~~~~e~~~vpVivdA 256 (326)
T PRK11840 207 -----------D----PIAAKRLEDAG------AVAV---MPLGAPIG---SGLGIQ---NPYTIRLIVEGATVPVLVDA 256 (326)
T ss_pred -----------C----HHHHHHHHhcC------CEEE---eecccccc---CCCCCC---CHHHHHHHHHcCCCcEEEeC
Confidence 2 34688899999 4222 23111111 111111 34566777888889999999
Q ss_pred CC-CHHHHHHHHHcCCCcEEEechHHhhCchHH
Q 025135 181 GF-TRELGIQALAEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 181 ~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~ 212 (257)
|| +++++.++++-| +|.|.+..+...-+|-+
T Consensus 257 GIg~~sda~~AmelG-adgVL~nSaIa~a~dPv 288 (326)
T PRK11840 257 GVGTASDAAVAMELG-CDGVLMNTAIAEAKNPV 288 (326)
T ss_pred CCCCHHHHHHHHHcC-CCEEEEcceeccCCCHH
Confidence 99 999999999998 99999999998544433
No 249
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.66 E-value=0.056 Score=48.37 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=68.2
Q ss_pred CCcCCCCCCc--hhhHhhH---HHHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCce
Q 025135 61 NDRTDEYGGS--IENRCRF---LMQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKL 134 (257)
Q Consensus 61 N~R~D~yGGs--~enR~r~---~~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~v 134 (257)
|+|-+-+-+- .+|-.++ +.+-++.+|+.+++. .|++-.+ +.+++. ...+.| +
T Consensus 152 ~HR~~L~d~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~------------tleea~----~A~~~g------a 209 (277)
T PRK08072 152 NHRFGLYDGVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETE------------TEEQVR----EAVAAG------A 209 (277)
T ss_pred ccCCCCCceEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeC------------CHHHHH----HHHHcC------C
Confidence 4555444432 2333333 456788889988865 4665443 344433 344688 8
Q ss_pred eEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC--CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 135 TYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ--GTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 135 d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
|||-+.. . . .+.++++.+.++ +|+.+.|||+++.+.++++.| +|.|++|....
T Consensus 210 DyI~lD~-----~----------~---~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~G-vd~IAvg~l~~ 264 (277)
T PRK08072 210 DIIMFDN-----R----------T---PDEIREFVKLVPSAIVTEASGGITLENLPAYGGTG-VDYISLGFLTH 264 (277)
T ss_pred CEEEECC-----C----------C---HHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcC-CCEEEEChhhc
Confidence 9986621 1 1 134455555544 567799999999999999998 99999998766
No 250
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=96.60 E-value=0.08 Score=45.34 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEE
Q 025135 18 SEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGV 96 (257)
Q Consensus 18 ~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~v 96 (257)
-||-.++..++++ +.++|+|.|-+|+.-| ..-+...++.+++ .|.. .+.+
T Consensus 59 ~Dig~t~~~~~~~---~~~~gad~vTvh~~~g-------------------------~~~l~~~~~~~~~-~~~~v~~v~ 109 (213)
T TIGR01740 59 ADIPNTVKLQYES---KIKQGADMVNVHGVAG-------------------------SESVEAAKEAASE-GGRGLLAVT 109 (213)
T ss_pred cchHHHHHHHHHH---HHhcCCCEEEEcCCCC-------------------------HHHHHHHHHHhhc-CCCeEEEEE
Confidence 4555555555554 5679999999997542 1124445555543 2433 3455
Q ss_pred EEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcE
Q 025135 97 RMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTF 176 (257)
Q Consensus 97 rls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pv 176 (257)
.++.....+ . .....+....+++...+.| ++-+- +. .+.+..+|+..+.-+
T Consensus 110 ~lss~~~~~-~-~~~~~~~v~~~a~~~~~~g------~~g~v-~~--------------------~~~~~~ir~~~~~~~ 160 (213)
T TIGR01740 110 ELTSMGSLD-Y-GEDTMEKVLEYAKEAKAFG------LDGPV-CS--------------------AEEAKEIRKFTGDFL 160 (213)
T ss_pred cCCCCChhh-h-CcCHHHHHHHHHHHhhhcC------CeEEE-eC--------------------HHHHHHHHHhcCCce
Confidence 666421111 1 1112345566677666666 33221 11 133455777665347
Q ss_pred EEeCCCCHH---HH--------HHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 177 ICSGGFTRE---LG--------IQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 177 i~~G~it~~---~a--------~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
+.+.|+.++ .. .++++.| +|++.+||++...++....+
T Consensus 161 ~vtPGI~~~g~~~~dq~~~~~~~~~~~~G-ad~iVvGr~I~~~~d~~~~~ 209 (213)
T TIGR01740 161 ILTPGIRLQSKGADDQQRVVTLEDAKEAG-ADVIIVGRGIYAAEDPVEAA 209 (213)
T ss_pred EEeCCcCCCCCCcCCccccCCHHHHHHcC-CCEEEEChhhcCCCCHHHHH
Confidence 778888544 22 5677776 99999999999887755444
No 251
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=96.59 E-value=0.02 Score=39.74 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCch
Q 025135 81 LVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTED 159 (257)
Q Consensus 81 iv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~ 159 (257)
.|++||+++|++ .|.+-.+. . .+.+++..+++.|++ +.|++ +|- .+
T Consensus 1 ri~avr~~~g~~~~l~vDan~--~-------~~~~~a~~~~~~l~~--------~~~iE--eP~--------------~~ 47 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQ--A-------WTLEEAIRLARALED--------YEWIE--EPL--------------PP 47 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TT--B-------BSHHHHHHHHHHHGG--------GSEEE--SSS--------------ST
T ss_pred CHHHHHHhhCCCCeEEEECCC--C-------CCHHHHHHHHHHcCh--------hheee--cCC--------------CC
Confidence 478999999986 56666553 2 357889999999987 35676 541 22
Q ss_pred hHHHHHHHHHHHhCCcEEE
Q 025135 160 EEAQLLRTWRRSYQGTFIC 178 (257)
Q Consensus 160 ~~~~~~~~ir~~~~~pvi~ 178 (257)
.....++.+++.+++||.+
T Consensus 48 ~d~~~~~~l~~~~~~pia~ 66 (67)
T PF01188_consen 48 DDLDGLAELRQQTSVPIAA 66 (67)
T ss_dssp TSHHHHHHHHHHCSSEEEE
T ss_pred CCHHHHHHHHHhCCCCEEe
Confidence 2345678899999999875
No 252
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.58 E-value=0.13 Score=45.86 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCC
Q 025135 27 YRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHL 105 (257)
Q Consensus 27 f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~ 105 (257)
+.+-++...++|.|||-+++.-|- |. -=+.+.|.++ ++.+++++... +|.+=++.
T Consensus 23 ~~~~i~~l~~~Gv~gl~v~GstGE----~~-----------~lt~~Er~~l----~~~~~~~~~~~~~vi~gv~~----- 78 (284)
T cd00950 23 LERLIEFQIENGTDGLVVCGTTGE----SP-----------TLSDEEHEAV----IEAVVEAVNGRVPVIAGTGS----- 78 (284)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcc----hh-----------hCCHHHHHHH----HHHHHHHhCCCCcEEeccCC-----
Confidence 344444566799999998865532 11 1134566655 44445555443 55544442
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEE------e
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFIC------S 179 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~------~ 179 (257)
.+.++++++++..++.| ++.+-+..|.+... .......+.+.|.+..++||+. +
T Consensus 79 -----~~~~~~~~~a~~a~~~G------~d~v~~~~P~~~~~---------~~~~l~~~~~~ia~~~~~pi~lYn~P~~~ 138 (284)
T cd00950 79 -----NNTAEAIELTKRAEKAG------ADAALVVTPYYNKP---------SQEGLYAHFKAIAEATDLPVILYNVPGRT 138 (284)
T ss_pred -----ccHHHHHHHHHHHHHcC------CCEEEEcccccCCC---------CHHHHHHHHHHHHhcCCCCEEEEEChhHh
Confidence 35788999999999999 88888776654321 1233345566777777888663 2
Q ss_pred CC-CCHHHHHHHHHcCCCcEE
Q 025135 180 GG-FTRELGIQALAEDGADLV 199 (257)
Q Consensus 180 G~-it~~~a~~~l~~g~~D~V 199 (257)
|. ++++..+++.+...+-+|
T Consensus 139 g~~ls~~~~~~L~~~p~v~gi 159 (284)
T cd00950 139 GVNIEPETVLRLAEHPNIVGI 159 (284)
T ss_pred CCCCCHHHHHHHhcCCCEEEE
Confidence 33 378888888865444333
No 253
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.55 E-value=0.14 Score=46.79 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCC
Q 025135 75 CRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGR 154 (257)
Q Consensus 75 ~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~ 154 (257)
....++.++.+++.++ .+|.+.++.. +.+++.++++.++++| +|+|+++-....... ...+.
T Consensus 86 ~d~~~~~i~~~~~~~~-~pvi~sI~g~----------~~~e~~~~a~~~~~ag------ad~ielN~scpp~~~-~~~g~ 147 (334)
T PRK07565 86 PEEYLELIRRAKEAVD-IPVIASLNGS----------SAGGWVDYARQIEQAG------ADALELNIYYLPTDP-DISGA 147 (334)
T ss_pred HHHHHHHHHHHHHhcC-CcEEEEeccC----------CHHHHHHHHHHHHHcC------CCEEEEeCCCCCCCC-CCccc
Confidence 4445666767777663 3788888752 3567788999999999 888887532100000 00010
Q ss_pred CCCchhHHHHHHHHHHHhCCcEEEe--CCC-CHHHHHHHHHcCCCcEEEe
Q 025135 155 PGTEDEEAQLLRTWRRSYQGTFICS--GGF-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 155 ~~~~~~~~~~~~~ir~~~~~pvi~~--G~i-t~~~a~~~l~~g~~D~V~i 201 (257)
. ......+.++.+++.+++||++- +.+ +..+..+.+++.++|+|.+
T Consensus 148 ~-~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 148 E-VEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred c-HHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 0 11123456678888889998865 444 4555556666666997766
No 254
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.098 Score=44.57 Aligned_cols=74 Identities=27% Similarity=0.379 Sum_probs=51.4
Q ss_pred HHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 025135 123 LNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 123 L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~i 201 (257)
..++| +|+|-.+-..|....... ..+. ..+++.+.+ .+.+||+-|++ ||++|.++++-| ++.|.+
T Consensus 143 a~~~G------~D~IGTTLsGYT~~~~~~-----~~pD-f~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~G-a~aVvV 208 (229)
T COG3010 143 AHKLG------FDIIGTTLSGYTGYTEKP-----TEPD-FQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIG-ADAVVV 208 (229)
T ss_pred HHHcC------CcEEecccccccCCCCCC-----CCCc-HHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhC-CeEEEE
Confidence 55789 898865544454322110 1222 356666666 68899999999 999999999998 999999
Q ss_pred chHHhhCchH
Q 025135 202 GRLFISNPDL 211 (257)
Q Consensus 202 gR~~iadP~l 211 (257)
|-+. -.|..
T Consensus 209 GsAI-TRp~~ 217 (229)
T COG3010 209 GSAI-TRPEE 217 (229)
T ss_pred Cccc-CCHHH
Confidence 9654 45543
No 255
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=96.47 E-value=0.1 Score=46.60 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=82.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD- 92 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~- 92 (257)
++..+.+.+.++ +..++|.|||=+.+.-|- |. -=|.+.|.+++..+++. +...
T Consensus 15 ~iD~~~~~~~i~-------~l~~~Gv~Gi~~~GstGE----~~-----------~Ls~~Er~~~~~~~~~~----~~~~~ 68 (285)
T TIGR00674 15 SVDFAALEKLID-------FQIENGTDAIVVVGTTGE----SP-----------TLSHEEHKKVIEFVVDL----VNGRV 68 (285)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECccCcc----cc-----------cCCHHHHHHHHHHHHHH----hCCCC
Confidence 455555555555 455799999998765542 11 11346677665555554 3333
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY 172 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 172 (257)
+|.+=++. .+.++++++++..++.| +|.+-+..|.|..+ .......+.+.|.+++
T Consensus 69 ~vi~gv~~----------~s~~~~i~~a~~a~~~G------ad~v~v~pP~y~~~---------~~~~i~~~~~~i~~~~ 123 (285)
T TIGR00674 69 PVIAGTGS----------NATEEAISLTKFAEDVG------ADGFLVVTPYYNKP---------TQEGLYQHFKAIAEEV 123 (285)
T ss_pred eEEEeCCC----------ccHHHHHHHHHHHHHcC------CCEEEEcCCcCCCC---------CHHHHHHHHHHHHhcC
Confidence 55544442 35788999999999999 89888877755322 1223345566777778
Q ss_pred CCcEEE------eCC-CCHHHHHHHHHcC
Q 025135 173 QGTFIC------SGG-FTRELGIQALAED 194 (257)
Q Consensus 173 ~~pvi~------~G~-it~~~a~~~l~~g 194 (257)
++||+. +|- ++++..+++.+..
T Consensus 124 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~~ 152 (285)
T TIGR00674 124 DLPIILYNVPSRTGVSLYPETVKRLAEEP 152 (285)
T ss_pred CCCEEEEECcHHhcCCCCHHHHHHHHcCC
Confidence 888663 342 3788888887644
No 256
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.47 E-value=0.14 Score=45.91 Aligned_cols=136 Identities=12% Similarity=0.048 Sum_probs=81.2
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE---EccCCCC--CC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR---MSPAIDH--LD 106 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr---ls~~~~~--~~ 106 (257)
++|.++||+.|=+-++| =+++...++..|+++-.+.. |- .|-.- +...++. .+
T Consensus 94 ~~ai~~GftSVM~DgS~--------------------lp~eeNi~~Trevv~~Ah~~-gv-~VEaElG~igg~ed~~~~~ 151 (285)
T PRK07709 94 KEAIDAGFTSVMIDASH--------------------HPFEENVETTKKVVEYAHAR-NV-SVEAELGTVGGQEDDVIAE 151 (285)
T ss_pred HHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEEeccCCccCCcccc
Confidence 35556666666666554 13577789999999988853 32 22222 2222111 00
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC--CH
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF--TR 184 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i--t~ 184 (257)
.....+.+++.+|++ +.| +|++.++-++.++.+.. .+....+.++.|++.+++|++.=|+- ..
T Consensus 152 ~~~yT~peeA~~Fv~---~Tg------vD~LAvaiGt~HG~Y~~------~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~ 216 (285)
T PRK07709 152 GVIYADPAECKHLVE---ATG------IDCLAPALGSVHGPYKG------EPNLGFAEMEQVRDFTGVPLVLHGGTGIPT 216 (285)
T ss_pred cccCCCHHHHHHHHH---HhC------CCEEEEeecccccCcCC------CCccCHHHHHHHHHHHCCCEEEeCCCCCCH
Confidence 001235677766654 558 88887766555443311 11233467788999999997776654 67
Q ss_pred HHHHHHHHcCCCcEEEechHH
Q 025135 185 ELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~igR~~ 205 (257)
++..++++.| +-=|=++.-+
T Consensus 217 e~~~~ai~~G-i~KiNi~T~l 236 (285)
T PRK07709 217 ADIEKAISLG-TSKINVNTEN 236 (285)
T ss_pred HHHHHHHHcC-CeEEEeChHH
Confidence 8899999998 5455555543
No 257
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.43 E-value=0.18 Score=45.18 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCC
Q 025135 27 YRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHL 105 (257)
Q Consensus 27 f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~ 105 (257)
+.+-++...+.|.|||=+++.-|-. . -=|.+.|.+++..+++. +... +|.+=++.
T Consensus 24 l~~~i~~l~~~Gv~gi~~~Gs~GE~----~-----------~ls~~Er~~~~~~~~~~----~~~~~~vi~gv~~----- 79 (292)
T PRK03170 24 LRKLVDYLIANGTDGLVVVGTTGES----P-----------TLTHEEHEELIRAVVEA----VNGRVPVIAGTGS----- 79 (292)
T ss_pred HHHHHHHHHHcCCCEEEECCcCCcc----c-----------cCCHHHHHHHHHHHHHH----hCCCCcEEeecCC-----
Confidence 3334445567999999987765422 1 12356777665555544 4433 55543432
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEE------e
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFIC------S 179 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~------~ 179 (257)
.+.++++++++.++++| +|.+-+..|.+... .......+.+.|.+.++.||+. +
T Consensus 80 -----~~~~~~i~~a~~a~~~G------~d~v~~~pP~~~~~---------~~~~i~~~~~~ia~~~~~pv~lYn~P~~~ 139 (292)
T PRK03170 80 -----NSTAEAIELTKFAEKAG------ADGALVVTPYYNKP---------TQEGLYQHFKAIAEATDLPIILYNVPGRT 139 (292)
T ss_pred -----chHHHHHHHHHHHHHcC------CCEEEECCCcCCCC---------CHHHHHHHHHHHHhcCCCCEEEEECcccc
Confidence 34788999999999999 88888877654321 1223345556677777888663 2
Q ss_pred CC-CCHHHHHHHHHcCCC
Q 025135 180 GG-FTRELGIQALAEDGA 196 (257)
Q Consensus 180 G~-it~~~a~~~l~~g~~ 196 (257)
|. ++++...++.+...+
T Consensus 140 g~~l~~~~~~~L~~~p~v 157 (292)
T PRK03170 140 GVDILPETVARLAEHPNI 157 (292)
T ss_pred CCCCCHHHHHHHHcCCCE
Confidence 33 378877777543333
No 258
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=96.43 E-value=0.0088 Score=54.94 Aligned_cols=46 Identities=26% Similarity=0.220 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhC-CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 161 EAQLLRTWRRSYQ-GTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 161 ~~~~~~~ir~~~~-~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
...++.++++.++ +|||+.||| +.+.+..++.-| +|+|.||..|++
T Consensus 171 t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalG-A~gVq~GT~Fl~ 218 (336)
T COG2070 171 TFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALG-ADGVQMGTRFLA 218 (336)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhc-cHHHHhhhhhhc
Confidence 3456788999999 899999999 999999999998 999999999994
No 259
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.41 E-value=0.04 Score=47.98 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=64.1
Q ss_pred HHHHHHHHHhCCCe--EEEEEc-cCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCC
Q 025135 80 QLVREVIVAIGADR--VGVRMS-PAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPG 156 (257)
Q Consensus 80 eiv~aiR~~vg~~~--v~vrls-~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~ 156 (257)
+.++.+-+.+|++. +++-++ ...-..+++. .+.....++++.+++.| +.-+-++.-.....
T Consensus 110 ~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~-~~~~~~~e~~~~l~~~g------~~~ii~tdI~~dGt--------- 173 (232)
T PRK13586 110 NLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWK-EKSMEVIDGIKKVNELE------LLGIIFTYISNEGT--------- 173 (232)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCe-eCCCCHHHHHHHHHhcC------CCEEEEeccccccc---------
Confidence 35666677777653 455552 1100111111 11123457889999998 44333322111111
Q ss_pred CchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 157 TEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 157 ~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
......++++.+++. ..|++++||+ +.++..++.+.| +|.|.+|+++..
T Consensus 174 ~~G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G-~~gvivg~Aly~ 223 (232)
T PRK13586 174 TKGIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNVG-FDYIIVGMAFYL 223 (232)
T ss_pred CcCcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC-CCEEEEehhhhc
Confidence 011234556667665 5679999999 899999888765 999999999863
No 260
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.39 E-value=0.024 Score=48.95 Aligned_cols=46 Identities=13% Similarity=-0.024 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 025135 161 EAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 161 ~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
..+.++++++..++||+++||+ +++++.++.+.| +|.|.+|+++..
T Consensus 172 d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~G-a~~vivgsal~~ 218 (221)
T TIGR00734 172 NLELLTKTLELSEHPVMLGGGISGVEDLELLKEMG-VSAVLVATAVHK 218 (221)
T ss_pred CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEhHHhhC
Confidence 3567788888899999999999 899999987776 999999999863
No 261
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=96.39 E-value=0.11 Score=45.86 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=38.3
Q ss_pred HHHHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 166 RTWRRSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 166 ~~ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
..+...++ +.+|.-+|| +++++..+...| +|.|.+|..++..||.-++++
T Consensus 200 ~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G-~davLVGe~lm~~~d~~~~~~ 252 (254)
T PF00218_consen 200 EELAPLIPKDVIVISESGIKTPEDARRLARAG-ADAVLVGEALMRSPDPGEALR 252 (254)
T ss_dssp HHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT--SEEEESHHHHTSSSHHHHHH
T ss_pred HHHHhhCccceeEEeecCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHh
Confidence 34555443 446677888 899999998877 999999999999999888775
No 262
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.38 E-value=0.23 Score=44.53 Aligned_cols=138 Identities=12% Similarity=0.052 Sum_probs=84.9
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE---EccCCCC---
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR---MSPAIDH--- 104 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr---ls~~~~~--- 104 (257)
.++|.++||+.|-+-+++ =+++...+...|+++..+.. |- .|-.- +...++.
T Consensus 88 i~~ai~~GFtSVM~DgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gv-~VEaElG~vgg~e~~~~~ 145 (282)
T TIGR01858 88 IRQKVHAGVRSAMIDGSH--------------------FPFAQNVKLVKEVVDFCHRQ-DC-SVEAELGRLGGVEDDLSV 145 (282)
T ss_pred HHHHHHcCCCEEeecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-eEEEEEEecCCccCCCcc
Confidence 466777788888777665 13677899999999988863 32 22222 2221111
Q ss_pred CCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC--
Q 025135 105 LDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG-- 181 (257)
Q Consensus 105 ~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~-- 181 (257)
.+. ....+.+++.+|+ ++.| +|++.++-++.++.+.. .+....+.+++|++.+++|++.=|+
T Consensus 146 ~~~~~~~T~peea~~Fv---~~Tg------vD~LAvaiGt~HG~yk~------~p~Ldf~~L~~I~~~~~iPLVlHGgSG 210 (282)
T TIGR01858 146 DEEDALYTDPQEAKEFV---EATG------VDSLAVAIGTAHGLYKK------TPKLDFDRLAEIREVVDVPLVLHGASD 210 (282)
T ss_pred ccchhccCCHHHHHHHH---HHHC------cCEEecccCccccCcCC------CCccCHHHHHHHHHHhCCCeEEecCCC
Confidence 000 0123456666664 4678 89988776655443311 1123346788999999999776665
Q ss_pred CCHHHHHHHHHcCCCcEEEechHHh
Q 025135 182 FTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 182 it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+..++..++++.| +-=|=++..+.
T Consensus 211 ~~~e~~~~ai~~G-i~KiNi~T~l~ 234 (282)
T TIGR01858 211 VPDEDVRRTIELG-ICKVNVATELK 234 (282)
T ss_pred CCHHHHHHHHHcC-CeEEEeCcHHH
Confidence 4677888999988 55566665553
No 263
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.36 E-value=0.13 Score=46.49 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
+.+.+-+++..+.|.|||-+.+.-|=. .+ =|.+.|.++ ++.++++++.. ||.+=.+.
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~--~~-------------Ls~eEr~~v----~~~~v~~~~grvpviaG~g~--- 82 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGES--PT-------------LTLEERKEV----LEAVVEAVGGRVPVIAGVGS--- 82 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccc--hh-------------cCHHHHHHH----HHHHHHHHCCCCcEEEecCC---
Confidence 456666677889999999988766421 11 134566554 66667777654 55544442
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEE-e---
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFIC-S--- 179 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~-~--- 179 (257)
+..++++++++..++.| +|.+-+..|.|..+. ........+.|.++.+.|+|. |
T Consensus 83 -------~~t~eai~lak~a~~~G------ad~il~v~PyY~k~~---------~~gl~~hf~~ia~a~~lPvilYN~P~ 140 (299)
T COG0329 83 -------NSTAEAIELAKHAEKLG------ADGILVVPPYYNKPS---------QEGLYAHFKAIAEAVDLPVILYNIPS 140 (299)
T ss_pred -------CcHHHHHHHHHHHHhcC------CCEEEEeCCCCcCCC---------hHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 35788999999999999 888888777665432 222334456777888888664 2
Q ss_pred --CC-CCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 180 --GG-FTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 180 --G~-it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
|. ++++...++-+...+-.|=-+.+ |=+...+++
T Consensus 141 ~tg~~l~~e~i~~la~~~nivgiKd~~g---d~~~~~~~~ 177 (299)
T COG0329 141 RTGVDLSPETIARLAEHPNIVGVKDSSG---DLDRLEEII 177 (299)
T ss_pred ccCCCCCHHHHHHHhcCCCEEEEEeCCc---CHHHHHHHH
Confidence 22 36777777665333333332322 444445443
No 264
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.35 E-value=0.27 Score=44.16 Aligned_cols=138 Identities=11% Similarity=0.059 Sum_probs=84.6
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE---EccCCCCCC-
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR---MSPAIDHLD- 106 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr---ls~~~~~~~- 106 (257)
.++|.++||+.|-+-+++ =+++...+...++++-.+.. |- .|-.- +...++...
T Consensus 90 i~~Ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vv~~Ah~~-gv-~VEaElG~vgg~e~~~~~ 147 (284)
T PRK09195 90 IAQKVRSGVRSVMIDGSH--------------------LPFAQNISLVKEVVDFCHRF-DV-SVEAELGRLGGQEDDLQV 147 (284)
T ss_pred HHHHHHcCCCEEEeCCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEEecccCcccCccc
Confidence 455666777777766655 13678889999999988854 32 22222 222221100
Q ss_pred C---CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC--
Q 025135 107 A---TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG-- 181 (257)
Q Consensus 107 ~---~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~-- 181 (257)
. ....+.+++.+|++ +.| +|++.++-++.++.+.. .+....+.++.|++.+++|++.=|+
T Consensus 148 ~~~~~~~T~peea~~Fv~---~Tg------vD~LAvaiGt~HG~y~~------~p~Ld~~~L~~I~~~~~vPLVLHGgSG 212 (284)
T PRK09195 148 DEADALYTDPAQAREFVE---ATG------IDSLAVAIGTAHGMYKG------EPKLDFDRLENIRQWVNIPLVLHGASG 212 (284)
T ss_pred ccccccCCCHHHHHHHHH---HHC------cCEEeeccCccccccCC------CCcCCHHHHHHHHHHhCCCeEEecCCC
Confidence 0 01234666666654 568 88888776655443311 1123346788999999999776665
Q ss_pred CCHHHHHHHHHcCCCcEEEechHHh
Q 025135 182 FTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 182 it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+..++..++++.| +-=|=++..+.
T Consensus 213 ~~~e~~~~ai~~G-i~KiNi~T~l~ 236 (284)
T PRK09195 213 LPTKDIQQTIKLG-ICKVNVATELK 236 (284)
T ss_pred CCHHHHHHHHHcC-CeEEEeCcHHH
Confidence 4677889999988 66666666664
No 265
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.34 E-value=0.37 Score=43.26 Aligned_cols=138 Identities=16% Similarity=0.127 Sum_probs=85.5
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEcc---CCCCC-
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSP---AIDHL- 105 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~---~~~~~- 105 (257)
.+++|.++||+.|=+-+++ =+++...+...++++..+. .|- +|-.-|.. .++..
T Consensus 89 ~i~~Ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~-~gv-~VEaElG~vgg~ed~~~ 146 (283)
T PRK07998 89 DVKQAVRAGFTSVMIDGAA--------------------LPFEENIAFTKEAVDFAKS-YGV-PVEAELGAILGKEDDHV 146 (283)
T ss_pred HHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHH-cCC-EEEEEeccCCCcccccc
Confidence 3445677888888886654 1356778899999998885 343 33223321 11110
Q ss_pred -CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC--
Q 025135 106 -DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-- 182 (257)
Q Consensus 106 -~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-- 182 (257)
+.....+.+++.+|+ ++.| +|++.++-++.++.+. .+....+.+++|++.+++|++.=|+-
T Consensus 147 ~~~~~~T~pe~a~~Fv---~~Tg------vD~LAvaiGt~HG~Y~-------~p~l~~~~l~~I~~~~~vPLVlHGgSG~ 210 (283)
T PRK07998 147 SEADCKTEPEKVKDFV---ERTG------CDMLAVSIGNVHGLED-------IPRIDIPLLKRIAEVSPVPLVIHGGSGI 210 (283)
T ss_pred ccccccCCHHHHHHHH---HHhC------cCeeehhccccccCCC-------CCCcCHHHHHHHHhhCCCCEEEeCCCCC
Confidence 000113455555544 4668 8888776555444321 11123467888999999997776664
Q ss_pred CHHHHHHHHHcCCCcEEEechHHh
Q 025135 183 TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
..++..++++.| +-=|=+++.+.
T Consensus 211 ~~e~~~~ai~~G-i~KiNi~Tel~ 233 (283)
T PRK07998 211 PPEILRSFVNYK-VAKVNIASDLR 233 (283)
T ss_pred CHHHHHHHHHcC-CcEEEECHHHH
Confidence 678899999998 77788888764
No 266
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.26 E-value=0.36 Score=43.37 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=83.5
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC---eEEEEEccCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD---RVGVRMSPAIDHLD 106 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~---~v~vrls~~~~~~~ 106 (257)
.+++|.++||+.|-+-+++ =+++...++..|+++-.+.. |-. -|| ++...++...
T Consensus 89 ~i~~ai~~GFtSVM~DgS~--------------------lp~eeNi~~T~evv~~Ah~~-gv~VEaElG-~igg~ed~~~ 146 (286)
T PRK12738 89 DIRRKVHAGVRSAMIDGSH--------------------FPFAENVKLVKSVVDFCHSQ-DCSVEAELG-RLGGVEDDMS 146 (286)
T ss_pred HHHHHHHcCCCeEeecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCeEEEEEE-eeCCccCCcc
Confidence 3456667777777777665 13678899999999998863 221 132 2222221100
Q ss_pred CC----CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 107 AT----DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 107 ~~----~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
.. ...+.+++.+|++ +.| +|.+.++-++.++.+.. .+....+.+++|++.+++|++.=|+-
T Consensus 147 ~~~~~~~~T~peea~~Fv~---~Tg------vD~LAvaiGt~HG~Y~~------~p~Ldfd~l~~I~~~~~vPLVLHGgS 211 (286)
T PRK12738 147 VDAESAFLTDPQEAKRFVE---LTG------VDSLAVAIGTAHGLYSK------TPKIDFQRLAEIREVVDVPLVLHGAS 211 (286)
T ss_pred cccchhcCCCHHHHHHHHH---HhC------CCEEEeccCcccCCCCC------CCcCCHHHHHHHHHHhCCCEEEeCCC
Confidence 00 0234566666544 558 88888776655443311 12233467888999999997776654
Q ss_pred --CHHHHHHHHHcCCCcEEEechHH
Q 025135 183 --TRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 183 --t~~~a~~~l~~g~~D~V~igR~~ 205 (257)
..++..++++.| +-=|=++.-+
T Consensus 212 G~~~e~~~kai~~G-I~KiNi~T~l 235 (286)
T PRK12738 212 DVPDEFVRRTIELG-VTKVNVATEL 235 (286)
T ss_pred CCCHHHHHHHHHcC-CeEEEeCcHH
Confidence 677888999988 5455555544
No 267
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.25 E-value=0.12 Score=46.33 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=66.9
Q ss_pred cCCcCCCCCCc--hhhHhhHH---HHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCce
Q 025135 60 INDRTDEYGGS--IENRCRFL---MQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKL 134 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~~---~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~v 134 (257)
.|+|-+-+.+- .+|-.++. .+-++.+|+..+..+|++-.. +.+++ +...+.| +
T Consensus 153 ~~HR~~L~d~ilikdnHi~~~g~v~~av~~~r~~~~~~~I~VEv~------------tleea----~eA~~~g------a 210 (277)
T PRK05742 153 HNHRIGLYDAFLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVE------------SLDEL----RQALAAG------A 210 (277)
T ss_pred ccccCCCcccEEecHHHHHHhCCHHHHHHHHHHhCCCCeEEEEeC------------CHHHH----HHHHHcC------C
Confidence 35666555543 23444443 344677777653325665543 34443 3344678 8
Q ss_pred eEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 135 TYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 135 d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
|||-+.. + .+ +.++++.+.. ++|+.++|||+++.+.++.+.| +|+|++|.....=|
T Consensus 211 D~I~LD~--~-------------~~---e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tG-vD~Isvg~lt~s~~ 268 (277)
T PRK05742 211 DIVMLDE--L-------------SL---DDMREAVRLTAGRAKLEASGGINESTLRVIAETG-VDYISIGAMTKDVK 268 (277)
T ss_pred CEEEECC--C-------------CH---HHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEChhhcCCc
Confidence 9986521 1 11 2333333434 6899999999999999999887 99999998665433
No 268
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.23 E-value=0.045 Score=48.40 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHLDA 107 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~~~ 107 (257)
.|-..|..+|+|.|.++.=+|-.. +|+ |-++.+ +.|+++ .|+.++.+ .|..-+... +...
T Consensus 93 aal~iA~a~ga~FIRv~~~~g~~~-----------~d~--G~~~~~---a~e~~r-~r~~l~~~v~i~adV~~k--h~~~ 153 (257)
T TIGR00259 93 AALAIAMAVGAKFIRVNVLTGVYA-----------SDQ--GIIEGN---AGELIR-YKKLLGSEVKILADIVVK--HAVH 153 (257)
T ss_pred HHHHHHHHhCCCEEEEccEeeeEe-----------ccc--cccccc---HHHHHH-HHHHcCCCcEEEeceeec--ccCc
Confidence 344567788999998853222111 121 223333 233333 36666654 455444421 1111
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCCCHHH
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGFTREL 186 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~it~~~ 186 (257)
....+++ +.++.....+. .|.+-+++... +.+..+..++.+|+.. +.||+++||+|++.
T Consensus 154 l~~~~~~---e~a~~~~~~~~-----aDavivtG~~T------------G~~~d~~~l~~vr~~~~~~PvllggGvt~eN 213 (257)
T TIGR00259 154 LGNRDLE---SIALDTVERGL-----ADAVILSGKTT------------GTEVDLELLKLAKETVKDTPVLAGSGVNLEN 213 (257)
T ss_pred CCCCCHH---HHHHHHHHhcC-----CCEEEECcCCC------------CCCCCHHHHHHHHhccCCCeEEEECCCCHHH
Confidence 1112333 34454444442 67787775321 2233456677788755 58999999999999
Q ss_pred HHHHHHcCCCcEEEechHHhh
Q 025135 187 GIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 187 a~~~l~~g~~D~V~igR~~ia 207 (257)
..++++. +|.|.+|..+=.
T Consensus 214 v~e~l~~--adGviVgS~~K~ 232 (257)
T TIGR00259 214 VEELLSI--ADGVIVATTIKK 232 (257)
T ss_pred HHHHHhh--CCEEEECCCccc
Confidence 9999985 999999998853
No 269
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=96.22 E-value=0.089 Score=45.64 Aligned_cols=41 Identities=15% Similarity=0.021 Sum_probs=31.9
Q ss_pred HhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchH
Q 025135 171 SYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDL 211 (257)
Q Consensus 171 ~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l 211 (257)
.++.-|-++.|++.+....+..-..+.=|.+|..++++--+
T Consensus 180 ~~GL~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsiia~Al~ 220 (234)
T cd00003 180 ELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRALF 220 (234)
T ss_pred HcCCEEecCCCCCHHHHHHHHhCCCCeEEccCHHHHHHHHH
Confidence 34555666677898888877777779999999999987644
No 270
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.14 E-value=0.084 Score=47.50 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=70.7
Q ss_pred cCCcCCCCCCc--hhhHhhH---HHHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCc
Q 025135 60 INDRTDEYGGS--IENRCRF---LMQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAK 133 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~---~~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~ 133 (257)
.|+|-+-+-+- .+|-.++ +.+.++.+|+.++.. .|.|-.. +.+++.+ ..++|
T Consensus 159 ~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~------------tleea~e----A~~~G------ 216 (288)
T PRK07428 159 INHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETE------------TLEQVQE----ALEYG------ 216 (288)
T ss_pred ccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECC------------CHHHHHH----HHHcC------
Confidence 45666555432 3344444 467788888888753 4655443 3554433 33688
Q ss_pred eeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHH-HhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 134 LTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRR-SYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 134 vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~-~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
+|+|-+..- ........+..+++ .-++|+.++||||.+.+.++.+.| +|+|++|.....-|
T Consensus 217 aD~I~LDn~--------------~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tG-vD~Isvgsl~~sa~ 278 (288)
T PRK07428 217 ADIIMLDNM--------------PVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETG-VDYISSSAPITRSP 278 (288)
T ss_pred CCEEEECCC--------------CHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CCEEEEchhhhCCC
Confidence 888876421 11122223333433 235689999999999999999887 99999999877433
No 271
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=96.14 E-value=0.063 Score=50.64 Aligned_cols=102 Identities=9% Similarity=0.074 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHh-------CCC-eEEEEEccCCCCCCC--------CCCCcHHHHHHHHHHH-HhcCCccCCceeEEEee
Q 025135 78 LMQLVREVIVAI-------GAD-RVGVRMSPAIDHLDA--------TDSDPLGLGLAVIQGL-NKLQIDQGAKLTYLHVT 140 (257)
Q Consensus 78 ~~eiv~aiR~~v-------g~~-~v~vrls~~~~~~~~--------~~~~~~~~~~~l~~~L-~~~G~~~~~~vd~i~v~ 140 (257)
..+.|+.||+++ |++ .|++.....+.|++. ....+.++++++.+.| ++.+ +.||+
T Consensus 212 d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~------i~~iE-- 283 (408)
T cd03313 212 NEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYP------IVSIE-- 283 (408)
T ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCC------cEEEE--
Confidence 345555555555 665 577777544333221 1123567787876665 4577 77776
Q ss_pred CCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCC--CHHHHHHHHHcCCCcEEEe
Q 025135 141 QPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGF--TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~i--t~~~a~~~l~~g~~D~V~i 201 (257)
+|- .+..+...+.+++.+ ++||++...+ +++++.++++.+.+|.|.+
T Consensus 284 dPl--------------~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~i 334 (408)
T cd03313 284 DPF--------------DEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLI 334 (408)
T ss_pred eCC--------------CCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEE
Confidence 542 122245556788887 6777665434 5999999999999999975
No 272
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.13 E-value=0.25 Score=42.04 Aligned_cols=128 Identities=19% Similarity=0.107 Sum_probs=74.3
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSD 111 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~ 111 (257)
+.+.++|+|.|-+|+-.|. .-+.++++.+|+. |. .+++=+++. ..... ..
T Consensus 74 ~~~~~~gad~vtvh~e~g~-------------------------~~l~~~i~~~~~~-g~-~~~v~~~~~-~~~~~--~~ 123 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGR-------------------------DSLKAVVEAAAES-GG-KVFVVVEMS-HPGAL--EF 123 (215)
T ss_pred HHHHhCCCCEEEEcCcCCH-------------------------HHHHHHHHHHHhc-CC-eEEEEEeCC-CCCCC--CC
Confidence 4566799999999976521 1245567777753 32 454444432 11110 11
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCc-EEEeCCCCHH--HHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGT-FICSGGFTRE--LGI 188 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~G~it~~--~a~ 188 (257)
..+....++.+..+.| .+...+... . ...++.+++..+.+ .++.||++++ ...
T Consensus 124 ~~~~~~~v~~m~~e~G------~~g~~~~~~---------------~---~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~ 179 (215)
T PRK13813 124 IQPHADKLAKLAQEAG------AFGVVAPAT---------------R---PERVRYIRSRLGDELKIISPGIGAQGGKAA 179 (215)
T ss_pred HHHHHHHHHHHHHHhC------CCeEEECCC---------------c---chhHHHHHHhcCCCcEEEeCCcCCCCCCHH
Confidence 1334555666667777 443332110 1 12334566665543 4477898665 388
Q ss_pred HHHHcCCCcEEEechHHhhCchHHHH
Q 025135 189 QALAEDGADLVAYGRLFISNPDLVLR 214 (257)
Q Consensus 189 ~~l~~g~~D~V~igR~~iadP~l~~k 214 (257)
++++.| +|.+.+||++...+|..+.
T Consensus 180 ~~~~aG-ad~iV~Gr~I~~~~d~~~~ 204 (215)
T PRK13813 180 DAIKAG-ADYVIVGRSIYNAADPREA 204 (215)
T ss_pred HHHHcC-CCEEEECcccCCCCCHHHH
Confidence 888877 9999999999977774433
No 273
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.11 E-value=0.49 Score=42.57 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=82.0
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE---EccCCCCCCCC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR---MSPAIDHLDAT 108 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr---ls~~~~~~~~~ 108 (257)
++|.++||+.|=|-++| =+++...+...++++-.+. .|- .|-.- +...++.....
T Consensus 94 ~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~-~gv-~VEaElG~vgg~ed~~~~~ 151 (286)
T PRK08610 94 KEAIDAGFTSVMIDASH--------------------SPFEENVATTKKVVEYAHE-KGV-SVEAELGTVGGQEDDVVAD 151 (286)
T ss_pred HHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHH-cCC-EEEEEEeccCCccCCCCCc
Confidence 45667777777777665 1367788999999998884 332 22222 22222110000
Q ss_pred --CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC--CH
Q 025135 109 --DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF--TR 184 (257)
Q Consensus 109 --~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i--t~ 184 (257)
...+.+++.+|++ +.| +|++.++-++.++.+.. .+....+.+++|++.+++|++.=|+- ..
T Consensus 152 ~~~yT~peea~~Fv~---~Tg------vD~LAvaiGt~HG~Y~~------~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~ 216 (286)
T PRK08610 152 GIIYADPKECQELVE---KTG------IDALAPALGSVHGPYKG------EPKLGFKEMEEIGLSTGLPLVLHGGTGIPT 216 (286)
T ss_pred ccccCCHHHHHHHHH---HHC------CCEEEeeccccccccCC------CCCCCHHHHHHHHHHHCCCEEEeCCCCCCH
Confidence 1235667766654 668 88888776655543311 11223467888999999997776664 56
Q ss_pred HHHHHHHHcCCCcEEEechH
Q 025135 185 ELGIQALAEDGADLVAYGRL 204 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~igR~ 204 (257)
++..++++.| +-=|=++..
T Consensus 217 e~~~~ai~~G-I~KiNi~T~ 235 (286)
T PRK08610 217 KDIQKAIPFG-TAKINVNTE 235 (286)
T ss_pred HHHHHHHHCC-CeEEEeccH
Confidence 8889999988 444444444
No 274
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=96.08 E-value=0.15 Score=45.62 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
+.+.+-+....++|.||+-+.+..| +|.+ =|.+.|.++ ++.+++.++.. +|.+=++.
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstG----E~~~-----------Lt~~Er~~l----~~~~~~~~~~~~~vi~gv~~--- 79 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTG----EFYS-----------LTDEERKEL----LEIVVEAAAGRVPVIAGVGA--- 79 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTT----TGGG-----------S-HHHHHHH----HHHHHHHHTTSSEEEEEEES---
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCc----cccc-----------CCHHHHHHH----HHHHHHHccCceEEEecCcc---
Confidence 3444444556688999999877553 2211 134566655 44455555544 77776664
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEE-e---
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFIC-S--- 179 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~-~--- 179 (257)
.+.++++++++.+++.| +|.+-+..|.+... .......+.+.|.+..+.||+. +
T Consensus 80 -------~st~~~i~~a~~a~~~G------ad~v~v~~P~~~~~---------s~~~l~~y~~~ia~~~~~pi~iYn~P~ 137 (289)
T PF00701_consen 80 -------NSTEEAIELARHAQDAG------ADAVLVIPPYYFKP---------SQEELIDYFRAIADATDLPIIIYNNPA 137 (289)
T ss_dssp -------SSHHHHHHHHHHHHHTT-------SEEEEEESTSSSC---------CHHHHHHHHHHHHHHSSSEEEEEEBHH
T ss_pred -------hhHHHHHHHHHHHhhcC------ceEEEEeccccccc---------hhhHHHHHHHHHHhhcCCCEEEEECCC
Confidence 35788999999999999 88887777755322 1223345567777888888654 2
Q ss_pred --CC-CCHHHHHHHHHc
Q 025135 180 --GG-FTRELGIQALAE 193 (257)
Q Consensus 180 --G~-it~~~a~~~l~~ 193 (257)
|. ++++...++.+-
T Consensus 138 ~tg~~ls~~~l~~L~~~ 154 (289)
T PF00701_consen 138 RTGNDLSPETLARLAKI 154 (289)
T ss_dssp HHSSTSHHHHHHHHHTS
T ss_pred ccccCCCHHHHHHHhcC
Confidence 22 267777776653
No 275
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.06 E-value=0.27 Score=44.19 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=83.5
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE---EccCCCC-C-C
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR---MSPAIDH-L-D 106 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr---ls~~~~~-~-~ 106 (257)
++|.++||+.|-|-++| =+++...+...++++..++. |- .|-.- +...++- . +
T Consensus 91 ~~ai~~GftSVMiDgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gv-sVEaElG~igg~e~~~~~~ 148 (284)
T PRK12737 91 KKKVRAGIRSVMIDGSH--------------------LSFEENIAIVKEVVEFCHRY-DA-SVEAELGRLGGQEDDLVVD 148 (284)
T ss_pred HHHHHcCCCeEEecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEEeeccCccCCcccc
Confidence 55566666666666554 14677889999999998864 32 22222 2222211 0 0
Q ss_pred C--CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC--
Q 025135 107 A--TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-- 182 (257)
Q Consensus 107 ~--~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-- 182 (257)
. ....+.+++.+|++ +.| +|.+.++-++.++.+.. .+....+.++.|++.+++|++.=|+-
T Consensus 149 ~~~~~~T~peeA~~Fv~---~Tg------vD~LAvaiGt~HG~y~~------~p~Ld~~~L~~I~~~~~iPLVlHGgSG~ 213 (284)
T PRK12737 149 EKDAMYTNPDAAAEFVE---RTG------IDSLAVAIGTAHGLYKG------EPKLDFERLAEIREKVSIPLVLHGASGV 213 (284)
T ss_pred cccccCCCHHHHHHHHH---HhC------CCEEeeccCccccccCC------CCcCCHHHHHHHHHHhCCCEEEeCCCCC
Confidence 0 01234566766655 468 88888776655443311 11233467889999999997766654
Q ss_pred CHHHHHHHHHcCCCcEEEechHHh
Q 025135 183 TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
..++..++++.| +-=|=++..+-
T Consensus 214 ~~e~~~kai~~G-i~KiNi~T~l~ 236 (284)
T PRK12737 214 PDEDVKKAISLG-ICKVNVATELK 236 (284)
T ss_pred CHHHHHHHHHCC-CeEEEeCcHHH
Confidence 677889999988 66666776654
No 276
>PRK00077 eno enolase; Provisional
Probab=96.04 E-value=0.071 Score=50.56 Aligned_cols=102 Identities=8% Similarity=0.053 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHh-------CCC-eEEEEEccCCCCCCCC-----CCCcHHHH-HHHHHHHHhcCCccCCceeEEEeeCCC
Q 025135 78 LMQLVREVIVAI-------GAD-RVGVRMSPAIDHLDAT-----DSDPLGLG-LAVIQGLNKLQIDQGAKLTYLHVTQPR 143 (257)
Q Consensus 78 ~~eiv~aiR~~v-------g~~-~v~vrls~~~~~~~~~-----~~~~~~~~-~~l~~~L~~~G~~~~~~vd~i~v~~~~ 143 (257)
..+.|+.||+++ |++ .|++.....+.|.+.. ...+.+++ ..+++.+++.+ +.||+ +|-
T Consensus 215 ~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~------i~~iE--dPl 286 (425)
T PRK00077 215 NEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYP------IVSIE--DGL 286 (425)
T ss_pred hHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCC------cEEEE--cCC
Confidence 345566666664 776 5777775433332211 01233444 44566667787 77776 552
Q ss_pred cccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCC--CHHHHHHHHHcCCCcEEEe
Q 025135 144 YTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGF--TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~i--t~~~a~~~l~~g~~D~V~i 201 (257)
.+..+...+.+++.+ ++||++...+ ++++..++++.+.||+|.+
T Consensus 287 --------------~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~i 334 (425)
T PRK00077 287 --------------DENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILI 334 (425)
T ss_pred --------------CCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEe
Confidence 122345567788888 4777665544 4999999999999999976
No 277
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.99 E-value=0.36 Score=46.71 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC--eEEEEEcc
Q 025135 23 VIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD--RVGVRMSP 100 (257)
Q Consensus 23 ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~--~v~vrls~ 100 (257)
+++.|++ .+.++|.|.|-|..+. |..+-+...+++++++-..- .|.+-+++
T Consensus 98 vv~~fv~---~a~~~Gidi~RIfd~l------------------------ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp 150 (499)
T PRK12330 98 VVDRFVE---KSAENGMDVFRVFDAL------------------------NDPRNLEHAMKAVKKVGKHAQGTICYTVSP 150 (499)
T ss_pred HHHHHHH---HHHHcCCCEEEEEecC------------------------ChHHHHHHHHHHHHHhCCeEEEEEEEecCC
Confidence 4455554 4567899999987665 33467778888888765422 24445554
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEE
Q 025135 101 AIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFIC 178 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~ 178 (257)
. .+.+...++++.+.++| ++.|.+.... + ...+......++.+|+.+ ++||-.
T Consensus 151 ~---------~t~e~~~~~a~~l~~~G------ad~I~IkDta----G------ll~P~~~~~LV~~Lk~~~~~~ipI~~ 205 (499)
T PRK12330 151 I---------HTVEGFVEQAKRLLDMG------ADSICIKDMA----A------LLKPQPAYDIVKGIKEACGEDTRINL 205 (499)
T ss_pred C---------CCHHHHHHHHHHHHHcC------CCEEEeCCCc----c------CCCHHHHHHHHHHHHHhCCCCCeEEE
Confidence 2 46888999999999999 7877765421 0 112334456778899988 577644
Q ss_pred eCC----CCHHHHHHHHHcCCCcEEEe
Q 025135 179 SGG----FTRELGIQALAEDGADLVAY 201 (257)
Q Consensus 179 ~G~----it~~~a~~~l~~g~~D~V~i 201 (257)
=.. +......++++.| ||.|=.
T Consensus 206 H~Hnt~GlA~An~laAieAG-ad~vDt 231 (499)
T PRK12330 206 HCHSTTGVTLVSLMKAIEAG-VDVVDT 231 (499)
T ss_pred EeCCCCCcHHHHHHHHHHcC-CCEEEe
Confidence 222 2255667889988 877643
No 278
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.97 E-value=0.34 Score=43.46 Aligned_cols=128 Identities=14% Similarity=0.195 Sum_probs=79.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH-cCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQ-AGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD 92 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~-aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~ 92 (257)
++..+.++++++ ...+ +|.+||=+.+.-| +|. -=|.+.|.+++..+++. ++..
T Consensus 20 ~iD~~~~~~li~-------~l~~~~Gv~gi~v~GstG----E~~-----------~Ls~eEr~~~~~~~~~~----~~~~ 73 (293)
T PRK04147 20 QIDEQGLRRLVR-------FNIEKQGIDGLYVGGSTG----EAF-----------LLSTEEKKQVLEIVAEE----AKGK 73 (293)
T ss_pred CcCHHHHHHHHH-------HHHhcCCCCEEEECCCcc----ccc-----------cCCHHHHHHHHHHHHHH----hCCC
Confidence 344444555444 5567 9999999877542 221 12446677665555544 4433
Q ss_pred -eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHH
Q 025135 93 -RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRS 171 (257)
Q Consensus 93 -~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 171 (257)
+|.+=++. .+.++++++++..++.| +|.+-+..|.|..+ .......+.+.|.++
T Consensus 74 ~~viagvg~----------~~t~~ai~~a~~a~~~G------ad~v~v~~P~y~~~---------~~~~l~~~f~~va~a 128 (293)
T PRK04147 74 VKLIAQVGS----------VNTAEAQELAKYATELG------YDAISAVTPFYYPF---------SFEEICDYYREIIDS 128 (293)
T ss_pred CCEEecCCC----------CCHHHHHHHHHHHHHcC------CCEEEEeCCcCCCC---------CHHHHHHHHHHHHHh
Confidence 55554432 35788999999999999 88888877765332 122334456677777
Q ss_pred hCCcEEEe------CC-CCHHHHHHHHH
Q 025135 172 YQGTFICS------GG-FTRELGIQALA 192 (257)
Q Consensus 172 ~~~pvi~~------G~-it~~~a~~~l~ 192 (257)
++.||+.- |. ++++...++.+
T Consensus 129 ~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 129 ADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred CCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 88886643 32 37777777764
No 279
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=95.96 E-value=0.15 Score=44.29 Aligned_cols=41 Identities=12% Similarity=-0.057 Sum_probs=31.1
Q ss_pred HhCCcEEEeCCCCHHHHHHHHHcCC-CcEEEechHHhhCchH
Q 025135 171 SYQGTFICSGGFTRELGIQALAEDG-ADLVAYGRLFISNPDL 211 (257)
Q Consensus 171 ~~~~pvi~~G~it~~~a~~~l~~g~-~D~V~igR~~iadP~l 211 (257)
.++.-|-++.|++.+....+...-. ++=|.+|..++++--+
T Consensus 180 ~lGL~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsiia~Al~ 221 (237)
T TIGR00559 180 SLGLKVNAGHGLNYHNVKYFAEILPYLDELNIGHAIIADAVY 221 (237)
T ss_pred HcCCEEecCCCCCHHhHHHHHhCCCCceEEecCHHHHHHHHH
Confidence 3456677777789888877766644 8999999999988644
No 280
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.93 E-value=0.66 Score=41.69 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=80.9
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEE---ccCCCC-CC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRM---SPAIDH-LD 106 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrl---s~~~~~-~~ 106 (257)
.++|.++||+.|-+-+++ =++|...+...|+++..+. .|- .|-.-| ...++. ..
T Consensus 90 i~~ai~~GftSVM~DgS~--------------------lp~eeNi~~T~~vv~~Ah~-~gv-sVEaElG~vgg~e~~~~~ 147 (284)
T PRK12857 90 VMKCIRNGFTSVMIDGSK--------------------LPLEENIALTKKVVEIAHA-VGV-SVEAELGKIGGTEDDITV 147 (284)
T ss_pred HHHHHHcCCCeEEEeCCC--------------------CCHHHHHHHHHHHHHHHHH-cCC-EEEEEeeecCCccCCCCc
Confidence 344555666666665554 1467888999999998874 332 222222 221111 00
Q ss_pred CC---CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC--
Q 025135 107 AT---DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG-- 181 (257)
Q Consensus 107 ~~---~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~-- 181 (257)
.. ...+.+++.+|+ ++.| +|.+.++-++.++.+.. .+....+.+++|++.+++|++.=|+
T Consensus 148 ~~~~~~~T~pe~a~~Fv---~~Tg------vD~LAvaiGt~HG~y~~------~p~Ld~~~L~~i~~~~~vPLVlHGgSG 212 (284)
T PRK12857 148 DEREAAMTDPEEARRFV---EETG------VDALAIAIGTAHGPYKG------EPKLDFDRLAKIKELVNIPIVLHGSSG 212 (284)
T ss_pred ccchhhcCCHHHHHHHH---HHHC------CCEEeeccCccccccCC------CCcCCHHHHHHHHHHhCCCEEEeCCCC
Confidence 00 023456666665 4558 88887766555443311 1123346788899999999776665
Q ss_pred CCHHHHHHHHHcCCCcEEEechHH
Q 025135 182 FTRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 182 it~~~a~~~l~~g~~D~V~igR~~ 205 (257)
+..++..++++.| +-=|=++..+
T Consensus 213 ~~~e~~~~ai~~G-i~KiNi~T~~ 235 (284)
T PRK12857 213 VPDEAIRKAISLG-VRKVNIDTNI 235 (284)
T ss_pred CCHHHHHHHHHcC-CeEEEeCcHH
Confidence 4678889999988 5556666554
No 281
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.93 E-value=0.56 Score=40.81 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=72.0
Q ss_pred HHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcH
Q 025135 34 AIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPL 113 (257)
Q Consensus 34 a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~ 113 (257)
..++|+|-|-+|.=. + + .-+..+++.||+. |. ..|+=|++. .+.
T Consensus 78 ~~~aGad~it~H~Ea-----------~----~----------~~~~~~i~~Ik~~-G~-kaGlalnP~---------T~~ 121 (229)
T PRK09722 78 LADAGADFITLHPET-----------I----N----------GQAFRLIDEIRRA-GM-KVGLVLNPE---------TPV 121 (229)
T ss_pred HHHcCCCEEEECccC-----------C----c----------chHHHHHHHHHHc-CC-CEEEEeCCC---------CCH
Confidence 346799999999641 0 0 0245678888875 32 578888874 345
Q ss_pred HHHHHHHHHHHhcCCccCCceeEEEe--eCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh---C--CcEEEeCCCCHHH
Q 025135 114 GLGLAVIQGLNKLQIDQGAKLTYLHV--TQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY---Q--GTFICSGGFTREL 186 (257)
Q Consensus 114 ~~~~~l~~~L~~~G~~~~~~vd~i~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~--~pvi~~G~it~~~ 186 (257)
+....++. . +|+|-+ ++|.+.+.. ..+....-++++|+.. + .-+-+=||++.+.
T Consensus 122 ~~l~~~l~---~--------vD~VLvMsV~PGf~GQ~--------fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~ 182 (229)
T PRK09722 122 ESIKYYIH---L--------LDKITVMTVDPGFAGQP--------FIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKT 182 (229)
T ss_pred HHHHHHHH---h--------cCEEEEEEEcCCCcchh--------ccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHH
Confidence 54444433 3 344432 245544322 1222223333444432 2 2255569999999
Q ss_pred HHHHHHcCCCcEEEechH-Hhh-CchH
Q 025135 187 GIQALAEDGADLVAYGRL-FIS-NPDL 211 (257)
Q Consensus 187 a~~~l~~g~~D~V~igR~-~ia-dP~l 211 (257)
+.++.+.| +|.+.+|+. +.. +++.
T Consensus 183 i~~~~~aG-ad~~V~Gss~iF~~~~d~ 208 (229)
T PRK09722 183 YEKLMEAG-ADVFIVGTSGLFNLDEDI 208 (229)
T ss_pred HHHHHHcC-CCEEEEChHHHcCCCCCH
Confidence 99999998 999999986 555 4554
No 282
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.91 E-value=0.044 Score=46.13 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=39.2
Q ss_pred HHHHHHHHHHh-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhh
Q 025135 162 AQLLRTWRRSY-QGTFICSGGFTRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 162 ~~~~~~ir~~~-~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
...++.++..+ ++|+++.|||+++.+.++++.| ++.|+++..++.
T Consensus 140 ~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aG-a~~vav~s~i~~ 185 (187)
T PRK07455 140 ADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAG-AIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCC-CeEEEEehhccc
Confidence 35677788888 5999999999999999999987 999999988763
No 283
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.91 E-value=0.56 Score=41.93 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=75.7
Q ss_pred HHHHHHHHHHc-CCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCC
Q 025135 27 YRQAALNAIQA-GFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDH 104 (257)
Q Consensus 27 f~~AA~~a~~a-GfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~ 104 (257)
+.+-++...++ |.+||=+.+.-| +|.+ =+.+.|.+++..++++ ++.. +|.+=++.
T Consensus 23 ~~~~i~~l~~~~Gv~gi~~~GstG----E~~~-----------Lt~~Er~~~~~~~~~~----~~~~~~viagv~~---- 79 (288)
T cd00954 23 LRAIVDYLIEKQGVDGLYVNGSTG----EGFL-----------LSVEERKQIAEIVAEA----AKGKVTLIAHVGS---- 79 (288)
T ss_pred HHHHHHHHHhcCCCCEEEECcCCc----Cccc-----------CCHHHHHHHHHHHHHH----hCCCCeEEeccCC----
Confidence 33334455667 999999876543 2211 1346677665555554 4333 55554432
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEE-----
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFIC----- 178 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~----- 178 (257)
.+.++++++++..++.| +|.+-+..|.+..+ .......+.+.|.+++ +.||+.
T Consensus 80 ------~~~~~ai~~a~~a~~~G------ad~v~~~~P~y~~~---------~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 80 ------LNLKESQELAKHAEELG------YDAISAITPFYYKF---------SFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred ------CCHHHHHHHHHHHHHcC------CCEEEEeCCCCCCC---------CHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 34688999999999999 88887777655321 1233445567788888 789763
Q ss_pred -eCC-CCHHHHHHHHH
Q 025135 179 -SGG-FTRELGIQALA 192 (257)
Q Consensus 179 -~G~-it~~~a~~~l~ 192 (257)
+|. ++++...++.+
T Consensus 139 ~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 139 LTGVNLTLEQFLELFE 154 (288)
T ss_pred ccCCCCCHHHHHHHhc
Confidence 232 37888777775
No 284
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.91 E-value=0.12 Score=46.07 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCc
Q 025135 79 MQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTE 158 (257)
Q Consensus 79 ~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~ 158 (257)
.+.++.+|+..+...|++-.. +.+++.+ ..+.| +|||-+..- + .
T Consensus 171 ~~av~~~R~~~~~~~IgVev~------------t~eea~~----A~~~g------aD~I~ld~~-~-------------p 214 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD------------SLEEALA----AAEAG------ADILQLDKF-S-------------P 214 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC------------CHHHHHH----HHHcC------CCEEEECCC-C-------------H
Confidence 467788888775435555432 3444332 34678 888876421 0 1
Q ss_pred hhHHHHHHHHHHHh-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 159 DEEAQLLRTWRRSY-QGTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 159 ~~~~~~~~~ir~~~-~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
.......+.+++.. ++|++++||++++.+.++++.| +|+|+++...-
T Consensus 215 ~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~G-vd~I~vsai~~ 262 (272)
T cd01573 215 EELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAAG-ADILVTSAPYY 262 (272)
T ss_pred HHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHcC-CcEEEEChhhc
Confidence 12223334455442 6899999999999999999987 99998887654
No 285
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.91 E-value=0.47 Score=42.63 Aligned_cols=145 Identities=12% Similarity=0.165 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchh---hHhhHHHHHHHHHHHH-hCCC-eEEEEEcc
Q 025135 26 QYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIE---NRCRFLMQLVREVIVA-IGAD-RVGVRMSP 100 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~e---nR~r~~~eiv~aiR~~-vg~~-~v~vrls~ 100 (257)
...+.+++..++|..||-|--.. .++|+..+|+.-+ -...-..+.|++++++ .+.+ +|..|.-.
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~-----------~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa 161 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKL-----------GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVES 161 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccC-----------CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 34455666778999999983211 1244444443211 1123445566777666 4555 57778543
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEe
Q 025135 101 AIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICS 179 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~ 179 (257)
.. . ....+++++-++...++| .|.+-+..+.. .......+.+.++..+ ++|++.+
T Consensus 162 ~~--~----~~~~~eAi~Ra~ay~eAG------AD~ifv~~~~~------------~~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 162 LI--L----GKGMEDALKRAEAYAEAG------ADGIMIHSRKK------------DPDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred cc--c----cCCHHHHHHHHHHHHHcC------CCEEEecCCCC------------CHHHHHHHHHHhhhhCCCCCEEEe
Confidence 10 0 124788999999999999 67665532100 1112223333333222 3587665
Q ss_pred CC-CCHHHHHHHHHcCCCcEEEechHHh
Q 025135 180 GG-FTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 180 G~-it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
.+ ...-..+++-+-| +..|.+|-.++
T Consensus 218 ~~~~~~~~~~eL~~lG-~~~v~~~~~~~ 244 (285)
T TIGR02320 218 PTSYYTTPTDEFRDAG-ISVVIYANHLL 244 (285)
T ss_pred cCCCCCCCHHHHHHcC-CCEEEEhHHHH
Confidence 32 1111345555555 99999985443
No 286
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.89 E-value=0.15 Score=45.61 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=67.7
Q ss_pred cCCcCCCCCCc--hhhHhhHH---HHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCc
Q 025135 60 INDRTDEYGGS--IENRCRFL---MQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAK 133 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~~---~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~ 133 (257)
.|+|-+-+-+- .+|-..+. .+.++.+|+.++.. .|.+-++ +.+++.+ ..++|
T Consensus 145 ~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~------------tleea~~----A~~~G------ 202 (273)
T PRK05848 145 SNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECE------------SLEEAKN----AMNAG------ 202 (273)
T ss_pred ccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeC------------CHHHHHH----HHHcC------
Confidence 45666555432 34444443 56788888888743 5666554 3555443 44688
Q ss_pred eeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhh
Q 025135 134 LTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGFTRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 134 vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
+|.|-+.... .......++.++... ++.+.++||||++.+.++.+.| +|+|++|.....
T Consensus 203 aDiI~LDn~~--------------~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~G-vD~IsvG~l~~s 262 (273)
T PRK05848 203 ADIVMCDNMS--------------VEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSG-VDAISSGSLIHQ 262 (273)
T ss_pred CCEEEECCCC--------------HHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcC-CCEEEeChhhcC
Confidence 7877654321 111112222222111 3459999999999999999887 999999987763
No 287
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.85 E-value=0.07 Score=45.60 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQA 190 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~ 190 (257)
+.+++..+++.|.+.| +..++++-. .+...+.++.+++.++.-+++.|.+ |+++++++
T Consensus 18 ~~e~a~~~~~al~~~G------i~~iEit~~---------------t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a 76 (204)
T TIGR01182 18 DVDDALPLAKALIEGG------LRVLEVTLR---------------TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQA 76 (204)
T ss_pred CHHHHHHHHHHHHHcC------CCEEEEeCC---------------CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHH
Confidence 4788999999999999 888887642 1223456778888776557788888 99999999
Q ss_pred HHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 191 LAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 191 l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
++.| ++|++-= . .||++.+..++
T Consensus 77 ~~aG-A~FivsP-~--~~~~v~~~~~~ 99 (204)
T TIGR01182 77 VDAG-AQFIVSP-G--LTPELAKHAQD 99 (204)
T ss_pred HHcC-CCEEECC-C--CCHHHHHHHHH
Confidence 9998 9998432 2 38888887664
No 288
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=95.83 E-value=0.68 Score=41.69 Aligned_cols=119 Identities=11% Similarity=0.035 Sum_probs=70.8
Q ss_pred chhhHhhHHHHHHHHHHHHhCCCeEEEEEc---cCCCC---CCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCC
Q 025135 70 SIENRCRFLMQLVREVIVAIGADRVGVRMS---PAIDH---LDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQP 142 (257)
Q Consensus 70 s~enR~r~~~eiv~aiR~~vg~~~v~vrls---~~~~~---~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~ 142 (257)
+++...+...++++-.+.. |- .|-.-|. ..++. ... ....+.+++.+|+ ++.| +|.+.++-+
T Consensus 112 p~eeNi~~T~~vv~~Ah~~-gv-~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~~Tg------vD~LAvaiG 180 (288)
T TIGR00167 112 PFEENIELTKKVVERAHKM-GV-SVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV---KLTG------VDSLAAAIG 180 (288)
T ss_pred CHHHHHHHHHHHHHHHHHc-CC-EEEEEEeeccCccCCcccccccccCCCHHHHHHHH---hccC------CcEEeeccC
Confidence 3677789999999887754 32 2222222 11111 000 0122455555554 4567 888887766
Q ss_pred CcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC--CHHHHHHHHHcCCCcEEEechHH
Q 025135 143 RYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF--TRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i--t~~~a~~~l~~g~~D~V~igR~~ 205 (257)
+.++.+.. .+.....+.+++|++.+++|++.=|+- ..++..++++.| +-=|=++..+
T Consensus 181 t~HG~y~~-----~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T~l 239 (288)
T TIGR00167 181 NVHGVYKG-----EPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLG-VVKVNIDTEL 239 (288)
T ss_pred ccccccCC-----CCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEcChHH
Confidence 55443311 012134577889999999997776654 567899999998 5556666554
No 289
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=95.83 E-value=0.81 Score=41.16 Aligned_cols=141 Identities=15% Similarity=0.117 Sum_probs=84.4
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC--
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA-- 107 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~-- 107 (257)
..++|.++||+.|-|-+++ -+++...+...++++-.++. |- .|-.-|..-.+..+.
T Consensus 88 ~i~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vv~~ah~~-gv-~VEaElG~i~g~ed~~~ 145 (287)
T PF01116_consen 88 DIKRAIDAGFTSVMIDGSA--------------------LPFEENIAITREVVEYAHAY-GV-SVEAELGHIGGKEDGIE 145 (287)
T ss_dssp HHHHHHHHTSSEEEEE-TT--------------------S-HHHHHHHHHHHHHHHHHT-T--EEEEEESBSSSSCTTCS
T ss_pred HHHHHHHhCcccccccCCc--------------------CCHHHHHHHHHHHHHhhhhh-CC-EEEEEeeeeeccCCCcc
Confidence 3456677788888877665 24678899999999998863 21 333333321111111
Q ss_pred ------CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeC
Q 025135 108 ------TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSG 180 (257)
Q Consensus 108 ------~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G 180 (257)
....+.+++.+|+ ++.| +|++.++-++.++.+... ..+....+.+++|++.+ ++|++.=|
T Consensus 146 ~~~~~~~~~TdP~~a~~Fv---~~Tg------vD~LAvaiGt~HG~y~~~----~~p~Ld~~~L~~I~~~~~~iPLVlHG 212 (287)
T PF01116_consen 146 SEEETESLYTDPEEAKEFV---EETG------VDALAVAIGTAHGMYKGG----KKPKLDFDRLKEIREAVPDIPLVLHG 212 (287)
T ss_dssp SSTT-TTCSSSHHHHHHHH---HHHT------TSEEEE-SSSBSSSBSSS----SSTC--HHHHHHHHHHHHTSEEEESS
T ss_pred ccccccccccCHHHHHHHH---HHhC------CCEEEEecCccccccCCC----CCcccCHHHHHHHHHhcCCCCEEEEC
Confidence 0112455555554 4668 888988766655433110 01123456788999999 99988766
Q ss_pred CC--CHHHHHHHHHcCCCcEEEechHHh
Q 025135 181 GF--TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 181 ~i--t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+- ..++..++++.| +-=|=++..+.
T Consensus 213 gSG~~~e~~~~ai~~G-i~KiNi~T~~~ 239 (287)
T PF01116_consen 213 GSGLPDEQIRKAIKNG-ISKINIGTELR 239 (287)
T ss_dssp CTTS-HHHHHHHHHTT-EEEEEESHHHH
T ss_pred CCCCCHHHHHHHHHcC-ceEEEEehHHH
Confidence 64 677899999988 65666666554
No 290
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=95.81 E-value=0.24 Score=42.62 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=33.0
Q ss_pred HHHHHHHhCC--cEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCch
Q 025135 165 LRTWRRSYQG--TFICSGGFTRELGIQALAEDGADLVAYGRLFISNPD 210 (257)
Q Consensus 165 ~~~ir~~~~~--pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~ 210 (257)
+..+|+..+. .+.+.||++++.+....+. .+|++.+||+....+|
T Consensus 153 ~~~ir~~~~~~~~i~V~gGI~~~~~~~~~~~-~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 153 LNKVKKLSDMGFKVSVTGGLVVEDLKLFKGI-PVKTFIAGRAIRGAAD 199 (216)
T ss_pred HHHHHHHhcCCCeEEEcCCCCHhhHHHHhcC-CCCEEEECCcccCCCC
Confidence 3445555432 2778899999888776555 4999999999887777
No 291
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.80 E-value=0.5 Score=42.49 Aligned_cols=138 Identities=10% Similarity=0.068 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCC-C-eEEEEEccCCCC
Q 025135 27 YRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGA-D-RVGVRMSPAIDH 104 (257)
Q Consensus 27 f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~-~-~v~vrls~~~~~ 104 (257)
..+.+++..++|..||.|--.. .+||+...+|...-......+-|+++|++... + .|..|....
T Consensus 90 v~~tv~~~~~aG~agi~IEDq~-----------~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~--- 155 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIEDQV-----------LPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDAR--- 155 (285)
T ss_pred HHHHHHHHHHcCCeEEEEecCC-----------CccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcc---
Confidence 3445677788999999885321 23555555443111233445556777776543 3 356677543
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEe---CC
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICS---GG 181 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~---G~ 181 (257)
. ....+++++=++...++| .|.+-+..+ . ..+.++++.+.++.|++++ ++
T Consensus 156 ~----~~g~deAI~Ra~ay~~AG------AD~vfi~g~---------------~--~~e~i~~~~~~i~~Pl~~n~~~~~ 208 (285)
T TIGR02317 156 A----VEGLDAAIERAKAYVEAG------ADMIFPEAL---------------T--SLEEFRQFAKAVKVPLLANMTEFG 208 (285)
T ss_pred c----ccCHHHHHHHHHHHHHcC------CCEEEeCCC---------------C--CHHHHHHHHHhcCCCEEEEeccCC
Confidence 1 124788888899999999 676655332 0 1244567788888897432 33
Q ss_pred CCHH-HHHHHHHcCCCcEEEechHHh
Q 025135 182 FTRE-LGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 182 it~~-~a~~~l~~g~~D~V~igR~~i 206 (257)
-++. ..+++-+-| +..|.+|-.++
T Consensus 209 ~~p~~s~~eL~~lG-v~~v~~~~~~~ 233 (285)
T TIGR02317 209 KTPLFTADELREAG-YKMVIYPVTAF 233 (285)
T ss_pred CCCCCCHHHHHHcC-CcEEEEchHHH
Confidence 3332 455555555 99999996655
No 292
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.80 E-value=0.53 Score=40.23 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=37.8
Q ss_pred HHHHHHHHHhC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 163 QLLRTWRRSYQ-GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 163 ~~~~~ir~~~~-~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
.+++.++.-++ +|++.+||++++.+.+.|+.| +..|++|..+....
T Consensus 137 ~yikal~~plp~i~~~ptGGV~~~N~~~~l~aG-a~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 137 KMLKALAGPFPQVRFCPTGGINLANVRDYLAAP-NVACGGGSWLVPKD 183 (204)
T ss_pred HHHHHHhccCCCCcEEecCCCCHHHHHHHHhCC-CEEEEEChhhcCch
Confidence 34556666554 689999999999999999998 99999999998533
No 293
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.78 E-value=0.075 Score=45.30 Aligned_cols=81 Identities=9% Similarity=0.071 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQA 190 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~ 190 (257)
+.+++..+++.|.+.| +..++++-. .+...+.++.+++.++.-+|+.|.+ |+++++++
T Consensus 14 ~~~~a~~ia~al~~gG------i~~iEit~~---------------tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~a 72 (201)
T PRK06015 14 DVEHAVPLARALAAGG------LPAIEITLR---------------TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDA 72 (201)
T ss_pred CHHHHHHHHHHHHHCC------CCEEEEeCC---------------CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHH
Confidence 5788999999999999 888887642 1123456777887776557888988 99999999
Q ss_pred HHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 191 LAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 191 l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
++.| ++|++-= ..||++.+..++
T Consensus 73 i~aG-A~FivSP---~~~~~vi~~a~~ 95 (201)
T PRK06015 73 AKAG-SRFIVSP---GTTQELLAAAND 95 (201)
T ss_pred HHcC-CCEEECC---CCCHHHHHHHHH
Confidence 9998 9988753 367888877664
No 294
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=95.77 E-value=0.045 Score=47.66 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=29.6
Q ss_pred HhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchH
Q 025135 171 SYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDL 211 (257)
Q Consensus 171 ~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l 211 (257)
.++.-|-++.|++.+....+.+--.+.=|.||..++++--+
T Consensus 183 ~lGL~VnAGHgL~y~N~~~i~~i~~i~EvnIGHaiia~Al~ 223 (239)
T PF03740_consen 183 ELGLGVNAGHGLNYDNVRPIAAIPPIEEVNIGHAIIARALF 223 (239)
T ss_dssp HTT-EEEEETT--TTTHHHHHTSTTEEEEEE-HHHHHHHHH
T ss_pred HcCCEEecCCCCCHHHHHHHHhCCCceEEecCHHHHHHHHH
Confidence 34666778888888888888887779999999999987644
No 295
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.77 E-value=0.32 Score=43.59 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=79.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR 93 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~ 93 (257)
++..+.++++++ ...+.|.|||-+.+.-| +|. -=|.+.|.+++..+++++. |.-+
T Consensus 17 ~iD~~~l~~l~~-------~l~~~Gv~gi~v~GstG----E~~-----------~Ls~eEr~~l~~~~~~~~~---~~~p 71 (289)
T cd00951 17 SFDEDAYRAHVE-------WLLSYGAAALFAAGGTG----EFF-----------SLTPDEYAQVVRAAVEETA---GRVP 71 (289)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECcCCc----Ccc-----------cCCHHHHHHHHHHHHHHhC---CCCC
Confidence 455566666655 44569999999887653 111 1245778877666665542 2225
Q ss_pred EEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC
Q 025135 94 VGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ 173 (257)
Q Consensus 94 v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~ 173 (257)
|.+=++. +..+++++++..++.| +|.+-+..|.|... .........+.|.++.+
T Consensus 72 vi~gv~~-----------~t~~~i~~a~~a~~~G------ad~v~~~pP~y~~~---------~~~~i~~~f~~v~~~~~ 125 (289)
T cd00951 72 VLAGAGY-----------GTATAIAYAQAAEKAG------ADGILLLPPYLTEA---------PQEGLYAHVEAVCKSTD 125 (289)
T ss_pred EEEecCC-----------CHHHHHHHHHHHHHhC------CCEEEECCCCCCCC---------CHHHHHHHHHHHHhcCC
Confidence 5543321 3577899999999999 88888776655321 12233345566777778
Q ss_pred CcEEEe---CC-CCHHHHHHHHH
Q 025135 174 GTFICS---GG-FTRELGIQALA 192 (257)
Q Consensus 174 ~pvi~~---G~-it~~~a~~~l~ 192 (257)
+||+.- |. ++++...++.+
T Consensus 126 ~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 126 LGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh
Confidence 886643 32 37777777765
No 296
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.72 E-value=0.36 Score=43.58 Aligned_cols=126 Identities=11% Similarity=0.065 Sum_probs=77.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD- 92 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~- 92 (257)
.+..+.+.++++ ...+.|.|||-+.+.-| +|. -=|.+.|.+++..+++. ++..
T Consensus 24 ~iD~~~l~~li~-------~l~~~Gv~Gi~~~GstG----E~~-----------~Lt~eEr~~~~~~~~~~----~~~~~ 77 (303)
T PRK03620 24 SFDEAAYREHLE-------WLAPYGAAALFAAGGTG----EFF-----------SLTPDEYSQVVRAAVET----TAGRV 77 (303)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECcCCc----Ccc-----------cCCHHHHHHHHHHHHHH----hCCCC
Confidence 455555555555 44568999999887653 221 12456777775555544 4433
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY 172 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 172 (257)
+|.+=++. +.++++++++..++.| ++.+-+..|.|... .......+.+.|.++.
T Consensus 78 pvi~gv~~-----------~t~~~i~~~~~a~~~G------adav~~~pP~y~~~---------~~~~i~~~f~~va~~~ 131 (303)
T PRK03620 78 PVIAGAGG-----------GTAQAIEYAQAAERAG------ADGILLLPPYLTEA---------PQEGLAAHVEAVCKST 131 (303)
T ss_pred cEEEecCC-----------CHHHHHHHHHHHHHhC------CCEEEECCCCCCCC---------CHHHHHHHHHHHHHhC
Confidence 55442221 3678899999999999 88887776654321 1223344556677777
Q ss_pred CCcEEEe---C-CCCHHHHHHHH
Q 025135 173 QGTFICS---G-GFTRELGIQAL 191 (257)
Q Consensus 173 ~~pvi~~---G-~it~~~a~~~l 191 (257)
++||+.- | .++++...++.
T Consensus 132 ~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 132 DLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHH
Confidence 8886642 2 23677766666
No 297
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.72 E-value=0.24 Score=42.98 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=32.1
Q ss_pred HHHHHHhC-CcEEEeCCCCHH-----------HHHHHHHcCCCcEEEechHHhhCchHHH
Q 025135 166 RTWRRSYQ-GTFICSGGFTRE-----------LGIQALAEDGADLVAYGRLFISNPDLVL 213 (257)
Q Consensus 166 ~~ir~~~~-~pvi~~G~it~~-----------~a~~~l~~g~~D~V~igR~~iadP~l~~ 213 (257)
..+|+.++ ..++.++|++++ ...++++.| +|+|.+||+....+|-..
T Consensus 160 ~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~G-ad~iVvGR~I~~a~dP~~ 218 (230)
T PRK00230 160 AAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAG-SDYIVVGRPITQAADPAA 218 (230)
T ss_pred HHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcC-CCEEEECCcccCCCCHHH
Confidence 44666653 235666777544 577788766 999999999886665443
No 298
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.71 E-value=0.38 Score=43.64 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=77.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD- 92 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~- 92 (257)
.+..+.++++++ ...++|.+||=+.+.-|= |. -=+.+.|.+++..+ ++.++..
T Consensus 25 ~iD~~~l~~lv~-------~li~~Gv~Gi~v~GstGE----~~-----------~Lt~eEr~~v~~~~----~~~~~grv 78 (309)
T cd00952 25 TVDLDETARLVE-------RLIAAGVDGILTMGTFGE----CA-----------TLTWEEKQAFVATV----VETVAGRV 78 (309)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECccccc----ch-----------hCCHHHHHHHHHHH----HHHhCCCC
Confidence 355555555555 456699999999876541 11 12456676655444 4445443
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY 172 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 172 (257)
+|.+=++. .+.++++++++..++.| +|.+-+..|.|... .......+.+.|.++.
T Consensus 79 pvi~Gv~~----------~~t~~ai~~a~~A~~~G------ad~vlv~~P~y~~~---------~~~~l~~yf~~va~a~ 133 (309)
T cd00952 79 PVFVGATT----------LNTRDTIARTRALLDLG------ADGTMLGRPMWLPL---------DVDTAVQFYRDVAEAV 133 (309)
T ss_pred CEEEEecc----------CCHHHHHHHHHHHHHhC------CCEEEECCCcCCCC---------CHHHHHHHHHHHHHhC
Confidence 66655543 24688999999999999 88888877755322 1223334556677777
Q ss_pred -CCcEEEe------C-CCCHHHHHHHH
Q 025135 173 -QGTFICS------G-GFTRELGIQAL 191 (257)
Q Consensus 173 -~~pvi~~------G-~it~~~a~~~l 191 (257)
++||+.- | .++++...++.
T Consensus 134 ~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 134 PEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred CCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 5786532 2 23566666654
No 299
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=95.69 E-value=0.65 Score=40.50 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=39.0
Q ss_pred chhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 158 EDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 158 ~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
.+...+.++.+++..+.||+++.|++++.+.++|+- +|.+.+|..+=
T Consensus 190 ~~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~--adG~IvgT~lK 236 (263)
T COG0434 190 SPPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKI--ADGVIVGTSLK 236 (263)
T ss_pred CCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHH--cCceEEEEEEc
Confidence 344456778889999999999999999999999976 99999997654
No 300
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.68 E-value=0.5 Score=42.51 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=81.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR 93 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~ 93 (257)
.+..+.++++++. ..+.|.|||-+.+..| +|. -=|.+.|.+++..+++++. |+-+
T Consensus 17 ~iD~~~l~~lv~~-------~~~~Gv~gi~v~GstG----E~~-----------~Ls~~Er~~l~~~~~~~~~---g~~p 71 (294)
T TIGR02313 17 DIDEEALRELIEF-------QIEGGSHAISVGGTSG----EPG-----------SLTLEERKQAIENAIDQIA---GRIP 71 (294)
T ss_pred CcCHHHHHHHHHH-------HHHcCCCEEEECccCc----ccc-----------cCCHHHHHHHHHHHHHHhC---CCCc
Confidence 4556666666654 4568999999887653 221 1245777777665555533 2225
Q ss_pred EEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-
Q 025135 94 VGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY- 172 (257)
Q Consensus 94 v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~- 172 (257)
|.+=++. .+.++++++++..++.| +|.+-+..|.|..+ .......+.+.|.++.
T Consensus 72 vi~gv~~----------~~t~~ai~~a~~A~~~G------ad~v~v~pP~y~~~---------~~~~l~~~f~~ia~a~~ 126 (294)
T TIGR02313 72 FAPGTGA----------LNHDETLELTKFAEEAG------ADAAMVIVPYYNKP---------NQEALYDHFAEVADAVP 126 (294)
T ss_pred EEEECCc----------chHHHHHHHHHHHHHcC------CCEEEEcCccCCCC---------CHHHHHHHHHHHHHhcc
Confidence 6544432 35678899999999999 88888877755432 1223345556788888
Q ss_pred CCcEEEe------CC-CCHHHHHHHHH
Q 025135 173 QGTFICS------GG-FTRELGIQALA 192 (257)
Q Consensus 173 ~~pvi~~------G~-it~~~a~~~l~ 192 (257)
+.||+.- |. ++++...++.+
T Consensus 127 ~lpv~iYn~P~~tg~~l~~~~l~~L~~ 153 (294)
T TIGR02313 127 DFPIIIYNIPGRAAQEIAPKTMARLRK 153 (294)
T ss_pred CCCEEEEeCchhcCcCCCHHHHHHHHh
Confidence 7886642 32 36777777774
No 301
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.66 E-value=0.66 Score=42.77 Aligned_cols=154 Identities=17% Similarity=0.119 Sum_probs=79.6
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchh-hHhhHHHHHHHHHHHHhCCCeEEEEE-ccCCCCCCCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIE-NRCRFLMQLVREVIVAIGADRVGVRM-SPAIDHLDAT 108 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~e-nR~r~~~eiv~aiR~~vg~~~v~vrl-s~~~~~~~~~ 108 (257)
++++++.|.|+|.++.=.| | |. ...++ ...+++.+|.+++++. |- |+.+-+ ... .-....
T Consensus 112 ve~a~~~GAdAVk~lv~~~--------~------d~-~~~~~~~~~~~l~rv~~ec~~~-gi-PlllE~l~y~-~~~~~~ 173 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR--------P------DE-DDAINDRKHAFVERVGAECRAN-DI-PFFLEPLTYD-GKGSDK 173 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC--------C------Cc-chHHHHHHHHHHHHHHHHHHHc-CC-ceEEEEeccC-CCcccc
Confidence 4568899999999875431 1 10 00011 2234566666666643 21 554432 211 000000
Q ss_pred CC-----CcHHHHHHHHHHHHh--cCCccCCceeEEEeeCCCcccCCCcCCCCCC--CchhHHHHHHHHHHHhCCc-EEE
Q 025135 109 DS-----DPLGLGLAVIQGLNK--LQIDQGAKLTYLHVTQPRYTAYGQTESGRPG--TEDEEAQLLRTWRRSYQGT-FIC 178 (257)
Q Consensus 109 ~~-----~~~~~~~~l~~~L~~--~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ir~~~~~p-vi~ 178 (257)
.. ...+.....++.+.+ +| +|++-+.-|.-............ ........++++.+..++| |++
T Consensus 174 ~~~~~a~~~p~~V~~a~r~~~~~elG------aDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvl 247 (340)
T PRK12858 174 KAEEFAKVKPEKVIKTMEEFSKPRYG------VDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFL 247 (340)
T ss_pred ccccccccCHHHHHHHHHHHhhhccC------CeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEE
Confidence 01 234566777888884 99 89887754421111000000000 0111123445556667888 556
Q ss_pred eCCCCHHH----HHHHHHcCCC--cEEEechHHhhCc
Q 025135 179 SGGFTREL----GIQALAEDGA--DLVAYGRLFISNP 209 (257)
Q Consensus 179 ~G~it~~~----a~~~l~~g~~--D~V~igR~~iadP 209 (257)
+|+.+.++ .+.+++.| + ..|.+||....++
T Consensus 248 sgG~~~~~f~~~l~~A~~aG-a~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 248 SAGVSPELFRRTLEFACEAG-ADFSGVLCGRATWQDG 283 (340)
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCccchhhhHHHHhhh
Confidence 78886443 45566665 7 8999999987654
No 302
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.66 E-value=0.2 Score=44.42 Aligned_cols=78 Identities=12% Similarity=-0.031 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHH
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALA 192 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~ 192 (257)
.+..++-++.++++| ++.+-+.. .+ .+.++.|.+.+++|+|+-|.=..-+.+-++
T Consensus 159 a~~~i~~A~a~e~AG------A~~ivlE~---------------vp---~~~a~~It~~l~iP~iGIGaG~~~dGQvlV- 213 (263)
T TIGR00222 159 AKKLLEDALALEEAG------AQLLVLEC---------------VP---VELAAKITEALAIPVIGIGAGNVCDGQILV- 213 (263)
T ss_pred HHHHHHHHHHHHHcC------CCEEEEcC---------------Cc---HHHHHHHHHhCCCCEEeeccCCCCCceeee-
Confidence 445677789999999 66665422 11 256788999999999876542101111111
Q ss_pred cCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 193 EDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 193 ~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
.-|++++...+ .|-|+++..+..
T Consensus 214 --~~D~lG~~~~~--~pkf~k~y~~~~ 236 (263)
T TIGR00222 214 --MHDALGITVGH--IPKFAKNYLAET 236 (263)
T ss_pred --HHhhcCCCCCC--CCCchHHHhhHH
Confidence 13455554332 688887776543
No 303
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.65 E-value=1.2 Score=39.11 Aligned_cols=146 Identities=11% Similarity=0.046 Sum_probs=87.0
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDAT 108 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~ 108 (257)
-.|+.+.++|||.|-+-.+. ....+ . ..|. +.+ -+.-+++.+++|++.+..-||.+-+-- +|.
T Consensus 23 ~sA~i~e~aG~dai~v~~s~---~a~~~-G----~pD~--~~v--tl~em~~~~~~I~r~~~~~pviaD~~~--G~g--- 85 (240)
T cd06556 23 SMAKQFADAGLNVMLVGDSQ---GMTVA-G----YDDT--LPY--PVNDVPYHVRAVRRGAPLALIVADLPF--GAY--- 85 (240)
T ss_pred HHHHHHHHcCCCEEEEChHH---HHHhc-C----CCCC--CCc--CHHHHHHHHHHHHhhCCCCCEEEeCCC--CCC---
Confidence 46788889999999976532 22211 1 1121 111 134567778888887754477776642 221
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCH----
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTR---- 184 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~---- 184 (257)
.+.+.+.+.++.+.++| ++.|++... ......++.++++ .+||++=-+.++
T Consensus 86 --~~~~~~~~~~~~l~~aG------a~gv~iED~----------------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~ 140 (240)
T cd06556 86 --GAPTAAFELAKTFMRAG------AAGVKIEGG----------------EWHIETLQMLTAA-AVPVIAHTGLTPQSVN 140 (240)
T ss_pred --cCHHHHHHHHHHHHHcC------CcEEEEcCc----------------HHHHHHHHHHHHc-CCeEEEEeCCchhhhh
Confidence 24577888999999999 899998542 1122334445544 356554222222
Q ss_pred ------------H-------HHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCC
Q 025135 185 ------------E-------LGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP 220 (257)
Q Consensus 185 ------------~-------~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~ 220 (257)
+ .+..+.+.| +|+|.+- .+ ++++.+++.+..+
T Consensus 141 ~~gg~~~~~~~~~~~~~ai~Ra~ay~~AG-Ad~i~~e--~~-~~e~~~~i~~~~~ 191 (240)
T cd06556 141 TSGGDEGQYRGDEAGEQLIADALAYAPAG-ADLIVME--CV-PVELAKQITEALA 191 (240)
T ss_pred ccCCceeeccCHHHHHHHHHHHHHHHHcC-CCEEEEc--CC-CHHHHHHHHHhCC
Confidence 2 233444555 9999996 33 8999999987644
No 304
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=95.64 E-value=1.2 Score=41.11 Aligned_cols=156 Identities=11% Similarity=-0.000 Sum_probs=91.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEE
Q 025135 17 TSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGV 96 (257)
Q Consensus 17 ~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~v 96 (257)
.+.|++.++.=.+..+++.++||+.|=|.++| =++|...++..++++..+. .|- .|-.
T Consensus 107 ~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~--------------------lpfEeNI~~TkevVe~Ah~-~Gv-sVEa 164 (350)
T PRK09197 107 LPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE--------------------EPLEENIEICSKYLERMAK-AGM-TLEI 164 (350)
T ss_pred hHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC--------------------CCHHHHHHHHHHHHHHHHH-cCC-EEEE
Confidence 44556666554455566666778888777665 1467889999999998874 332 2222
Q ss_pred ---EEccCCCCC--CCC----CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH
Q 025135 97 ---RMSPAIDHL--DAT----DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 97 ---rls~~~~~~--~~~----~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
++...++.. ... ...+.+++.+|++. .|++ ..+|.+.++-++.++.+.. + .+....+.++.
T Consensus 165 ELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~---Tgv~--~~~D~LAvaiGt~HG~Yk~--~---~p~Ld~e~L~~ 234 (350)
T PRK09197 165 ELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEA---LGKI--SGRFTIAASFGNVHGVYKP--G---NVKLRPEILKD 234 (350)
T ss_pred EEeccCCCcCCccccccccccccCCHHHHHHHHHH---hCCC--CcceEEeeecccccCCcCC--C---CCccCHHHHHH
Confidence 232222211 000 12356777777664 3510 0038887766555443310 0 11123467788
Q ss_pred HHHHh---------CCcEEEeCC--CCHHHHHHHHHcCCCcEEEechHH
Q 025135 168 WRRSY---------QGTFICSGG--FTRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 168 ir~~~---------~~pvi~~G~--it~~~a~~~l~~g~~D~V~igR~~ 205 (257)
|++.+ ++|++.=|+ ++.++..++++.| +-=|=++.-+
T Consensus 235 I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~G-I~KINi~T~l 282 (350)
T PRK09197 235 SQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYG-VVKMNIDTDT 282 (350)
T ss_pred HHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCC-CeeEEeCcHH
Confidence 98888 799777665 4678899999998 4445555443
No 305
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.62 E-value=0.57 Score=42.12 Aligned_cols=127 Identities=9% Similarity=0.017 Sum_probs=78.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD- 92 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~- 92 (257)
++..+.++++++ ...+.|.|||-+.+.-| +|. -=|.+.|.+++..+++. ++..
T Consensus 22 ~iD~~~l~~li~-------~l~~~Gv~gi~v~GstG----E~~-----------~Lt~eEr~~v~~~~~~~----~~g~~ 75 (296)
T TIGR03249 22 SFDEAAYRENIE-------WLLGYGLEALFAAGGTG----EFF-----------SLTPAEYEQVVEIAVST----AKGKV 75 (296)
T ss_pred CcCHHHHHHHHH-------HHHhcCCCEEEECCCCc----Ccc-----------cCCHHHHHHHHHHHHHH----hCCCC
Confidence 455556666655 44579999999877653 221 12346676665555544 4333
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY 172 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 172 (257)
+|.+=++. ..++++++++..++.| +|.+-+..|.|... .......+.+.|.++.
T Consensus 76 pvi~gv~~-----------~t~~ai~~a~~a~~~G------adav~~~pP~y~~~---------s~~~i~~~f~~v~~a~ 129 (296)
T TIGR03249 76 PVYTGVGG-----------NTSDAIEIARLAEKAG------ADGYLLLPPYLING---------EQEGLYAHVEAVCEST 129 (296)
T ss_pred cEEEecCc-----------cHHHHHHHHHHHHHhC------CCEEEECCCCCCCC---------CHHHHHHHHHHHHhcc
Confidence 55443331 3678899999999999 88887776655322 1223345566777778
Q ss_pred CCcEEEe---C-CCCHHHHHHHHH
Q 025135 173 QGTFICS---G-GFTRELGIQALA 192 (257)
Q Consensus 173 ~~pvi~~---G-~it~~~a~~~l~ 192 (257)
+.||+.- | .++++...++.+
T Consensus 130 ~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 130 DLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHh
Confidence 8886642 3 237787777765
No 306
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=95.57 E-value=0.21 Score=45.61 Aligned_cols=45 Identities=11% Similarity=-0.076 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG 181 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~ 181 (257)
.+..++-++.|+++| ++.|-+.. -+ ...++.|-+.+++|+|+-|.
T Consensus 181 a~~li~dA~ale~AG------Af~ivLE~----------------Vp--~~la~~It~~l~IPtIGIGA 225 (332)
T PLN02424 181 AVKVVETALALQEAG------CFAVVLEC----------------VP--APVAAAITSALQIPTIGIGA 225 (332)
T ss_pred HHHHHHHHHHHHHcC------CcEEEEcC----------------Cc--HHHHHHHHHhCCCCEEeecC
Confidence 345567789999999 66555421 11 23667899999999987654
No 307
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.56 E-value=0.22 Score=42.81 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQA 190 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~ 190 (257)
+.+++..+++.|.+.| ++.++++-. .+.....++.+++.++.-+|+.|-+ +.++++.+
T Consensus 25 ~~~~a~~i~~al~~~G------i~~iEitl~---------------~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a 83 (212)
T PRK05718 25 KLEDAVPLAKALVAGG------LPVLEVTLR---------------TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQA 83 (212)
T ss_pred CHHHHHHHHHHHHHcC------CCEEEEecC---------------CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHH
Confidence 5788999999999999 888988621 1223467788888877667888887 89999999
Q ss_pred HHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 191 LAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 191 l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
++.| +||+..= ..||++.+..++
T Consensus 84 ~~aG-A~FivsP---~~~~~vi~~a~~ 106 (212)
T PRK05718 84 IEAG-AQFIVSP---GLTPPLLKAAQE 106 (212)
T ss_pred HHcC-CCEEECC---CCCHHHHHHHHH
Confidence 9998 9987643 367788777664
No 308
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.096 Score=48.93 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=86.1
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSD 111 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~ 111 (257)
.+..+||.|.|-|..+.||- -+-+|.|+-||+..+...|. ... --
T Consensus 257 ~ll~~aGvdvviLDSSqGnS------------------------~~qiemik~iK~~yP~l~Vi---aGN--------VV 301 (503)
T KOG2550|consen 257 DLLVQAGVDVVILDSSQGNS------------------------IYQLEMIKYIKETYPDLQII---AGN--------VV 301 (503)
T ss_pred HHhhhcCCcEEEEecCCCcc------------------------hhHHHHHHHHHhhCCCceee---ccc--------ee
Confidence 34568999999999888642 35678899999998764331 110 01
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCc---ccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRY---TAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELG 187 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a 187 (257)
+ .+-++.|.++| +|.+.+--+.- ........|+ +.....+.+.++...+++|||+-||+ ++...
T Consensus 302 T----~~qa~nLI~aG------aDgLrVGMGsGSiCiTqevma~Gr--pQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi 369 (503)
T KOG2550|consen 302 T----KEQAANLIAAG------ADGLRVGMGSGSICITQKVMACGR--PQGTAVYKVAEFANQFGVPCIADGGIQNVGHV 369 (503)
T ss_pred e----HHHHHHHHHcc------CceeEeccccCceeeeceeeeccC--CcccchhhHHHHHHhcCCceeecCCcCccchh
Confidence 2 34567788899 77765532110 0000001111 12223345566778899999999999 88888
Q ss_pred HHHHHcCCCcEEEechHHhhCchHH
Q 025135 188 IQALAEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 188 ~~~l~~g~~D~V~igR~~iadP~l~ 212 (257)
-++|.-| ++.||||--|.+--+-+
T Consensus 370 ~KAl~lG-AstVMmG~lLAgtTEap 393 (503)
T KOG2550|consen 370 VKALGLG-ASTVMMGGLLAGTTEAP 393 (503)
T ss_pred HhhhhcC-chhheecceeeeeeccC
Confidence 8999998 99999997666554444
No 309
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=95.56 E-value=0.074 Score=45.17 Aligned_cols=81 Identities=12% Similarity=0.182 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQA 190 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~ 190 (257)
+.+++..+++.|.+.| +..++++-.. +...+.++.+++.++.-+++.|.+ |.++++++
T Consensus 18 ~~~~a~~~~~al~~gG------i~~iEiT~~t---------------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a 76 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGG------IRAIEITLRT---------------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAA 76 (196)
T ss_dssp SGGGHHHHHHHHHHTT--------EEEEETTS---------------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC------CCEEEEecCC---------------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHH
Confidence 3577899999999999 8888887421 223467777888887668888998 99999999
Q ss_pred HHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 191 LAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 191 l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
++.| ++|++-= ..||++.+..++
T Consensus 77 ~~aG-A~FivSP---~~~~~v~~~~~~ 99 (196)
T PF01081_consen 77 IAAG-AQFIVSP---GFDPEVIEYARE 99 (196)
T ss_dssp HHHT--SEEEES---S--HHHHHHHHH
T ss_pred HHcC-CCEEECC---CCCHHHHHHHHH
Confidence 9998 9988753 368888877664
No 310
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.55 E-value=0.26 Score=40.81 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=67.6
Q ss_pred CCcCCCCCCc--hhhHhhH---HHHHHHHHHHHhCCCe-EEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCce
Q 025135 61 NDRTDEYGGS--IENRCRF---LMQLVREVIVAIGADR-VGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKL 134 (257)
Q Consensus 61 N~R~D~yGGs--~enR~r~---~~eiv~aiR~~vg~~~-v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~v 134 (257)
|+|.+-+..- ..|-.++ +.+.++++|+..+..+ |.|... +.+++.+ ..++| +
T Consensus 44 ~hR~gl~d~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~------------~~ee~~e----a~~~g------~ 101 (169)
T PF01729_consen 44 NHRLGLSDMILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVE------------NLEEAEE----ALEAG------A 101 (169)
T ss_dssp HHHSSTTSSEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEES------------SHHHHHH----HHHTT-------
T ss_pred eEECCCCCcEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcC------------CHHHHHH----HHHhC------C
Confidence 4555555432 3444444 5677888888887764 777664 2444433 44477 7
Q ss_pred eEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhh
Q 025135 135 TYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGFTRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 135 d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
|.|-+... ........+..++.... +.+.++||||++...++.+.| +|++++|.....
T Consensus 102 d~I~lD~~--------------~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~g-vD~isvg~~~~~ 160 (169)
T PF01729_consen 102 DIIMLDNM--------------SPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTG-VDVISVGSLTHS 160 (169)
T ss_dssp SEEEEES---------------CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT--SEEEECHHHHS
T ss_pred CEEEecCc--------------CHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcC-CCEEEcChhhcC
Confidence 77766442 12223334444544433 458889999999999999887 999999986544
No 311
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.55 E-value=1.1 Score=40.15 Aligned_cols=138 Identities=16% Similarity=0.117 Sum_probs=84.1
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE---EccCCCCC--C
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR---MSPAIDHL--D 106 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr---ls~~~~~~--~ 106 (257)
++|.++||+.|-|-+++ =+++...+..+++++-.++. |- .|-.- +...++.. .
T Consensus 86 ~~ai~~GftSVMiD~S~--------------------l~~eeNi~~t~~vv~~ah~~-gv-~VEaElG~i~g~e~~~~~~ 143 (276)
T cd00947 86 KRAIRAGFSSVMIDGSH--------------------LPFEENVAKTKEVVELAHAY-GV-SVEAELGRIGGEEDGVVGD 143 (276)
T ss_pred HHHHHhCCCEEEeCCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-eEEEEEeeecCccCCcccc
Confidence 35567777777777665 13677889999999998875 22 22222 22211110 0
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC--CH
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF--TR 184 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i--t~ 184 (257)
.....+.+++.++++ +.| +|++.++-++.++.+.. + .+....+.+++|++.+++|++.=|+- ..
T Consensus 144 ~~~~T~pe~a~~Fv~---~Tg------vD~LAvsiGt~HG~Y~~--~---~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~ 209 (276)
T cd00947 144 EGLLTDPEEAEEFVE---ETG------VDALAVAIGTSHGAYKG--G---EPKLDFDRLKEIAERVNVPLVLHGGSGIPD 209 (276)
T ss_pred cccCCCHHHHHHHHH---HHC------CCEEEeccCccccccCC--C---CCccCHHHHHHHHHHhCCCEEEeCCCCCCH
Confidence 001234566666554 457 88888776655443311 0 11233567889999999997766654 67
Q ss_pred HHHHHHHHcCCCcEEEechHHh
Q 025135 185 ELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~igR~~i 206 (257)
++..++++.| +-=|=++..+.
T Consensus 210 e~~~~ai~~G-i~KiNi~T~l~ 230 (276)
T cd00947 210 EQIRKAIKLG-VCKININTDLR 230 (276)
T ss_pred HHHHHHHHcC-CeEEEeChHHH
Confidence 7899999988 66666666653
No 312
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.53 E-value=0.29 Score=42.44 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=31.6
Q ss_pred hCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 172 YQGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 172 ~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
.++|||++||+ +.++..++.+.| +|.|.+|++|...
T Consensus 181 ~~~pviasGGv~~~~Dl~~l~~~g-~~gvivg~al~~g 217 (228)
T PRK04128 181 GDEEFIYAGGVSSAEDVKKLAEIG-FSGVIIGKALYEG 217 (228)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCC-CCEEEEEhhhhcC
Confidence 47899999999 899999888765 9999999998754
No 313
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.51 E-value=1.1 Score=40.20 Aligned_cols=124 Identities=16% Similarity=0.109 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcC-CCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCC
Q 025135 26 QYRQAALNAIQAG-FDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAID 103 (257)
Q Consensus 26 ~f~~AA~~a~~aG-fDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~ 103 (257)
.+.+-.+...++| .|||=+.+.-| +| +-=+.+.|.+++..+++. ++.. +|.+=++.
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstG----E~-----------~~Lt~eEr~~~~~~~~~~----~~~~~pvi~gv~~--- 79 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTG----EN-----------FMLSTEEKKEIFRIAKDE----AKDQIALIAQVGS--- 79 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCccc----cc-----------ccCCHHHHHHHHHHHHHH----hCCCCcEEEecCC---
Confidence 3444444567799 99999877653 11 122457777665555544 4333 55554442
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEE----
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFIC---- 178 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~---- 178 (257)
.+.++++++++..++.| +|.+-+..|.|... .......+.+.|.++. +.||+.
T Consensus 80 -------~~t~~~i~la~~a~~~G------ad~v~v~~P~y~~~---------~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 80 -------VNLKEAVELGKYATELG------YDCLSAVTPFYYKF---------SFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred -------CCHHHHHHHHHHHHHhC------CCEEEEeCCcCCCC---------CHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 34688899999999999 88888877765432 1223334455665555 577653
Q ss_pred --eCC-CCHHHHHHHHHc
Q 025135 179 --SGG-FTRELGIQALAE 193 (257)
Q Consensus 179 --~G~-it~~~a~~~l~~ 193 (257)
+|. ++++...++.+.
T Consensus 138 ~~tg~~l~~~~i~~L~~~ 155 (290)
T TIGR00683 138 FLTGVNMGIEQFGELYKN 155 (290)
T ss_pred cccccCcCHHHHHHHhcC
Confidence 232 367777777643
No 314
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=95.47 E-value=0.059 Score=57.67 Aligned_cols=108 Identities=16% Similarity=0.101 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcC--CCCC
Q 025135 78 LMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTE--SGRP 155 (257)
Q Consensus 78 ~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~--~~~~ 155 (257)
+.+.|..+|+..+.-+|+||+..... . -.++.-+.++| +|+|+++...- ..+..+ +-..
T Consensus 983 L~qlI~~Lk~~~~~~~I~VKl~a~~~---------v---g~ia~gvaka~------aD~I~IdG~~G-GTGAap~~~~~~ 1043 (1485)
T PRK11750 983 LAQLIFDLKQVNPKALVSVKLVSEPG---------V---GTIATGVAKAY------ADLITISGYDG-GTGASPLTSVKY 1043 (1485)
T ss_pred HHHHHHHHHHhCCCCcEEEEEccCCC---------c---cHHHhChhhcC------CCEEEEeCCCC-CcccccHHHHhh
Confidence 67778888888665589999986311 1 11444456788 89999875211 111000 0001
Q ss_pred CCchhHHHHHHHHHHH-----h--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 156 GTEDEEAQLLRTWRRS-----Y--QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 156 ~~~~~~~~~~~~ir~~-----~--~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
.+.|+ ...+..+.+. + .+.|++.|++ |+.++..++.-| +|.|++||+++
T Consensus 1044 ~GlP~-e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLG-Ad~~~~gt~~l 1100 (1485)
T PRK11750 1044 AGSPW-ELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILG-AESFGFGTGPM 1100 (1485)
T ss_pred CCccH-HHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcC-CcccccchHHH
Confidence 11222 2223222222 2 3679999999 999999999998 99999999986
No 315
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.45 E-value=1.3 Score=40.38 Aligned_cols=90 Identities=14% Similarity=0.059 Sum_probs=53.2
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc-cCCCcCCCCCCCchhHHHHHHHHHHH
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT-AYGQTESGRPGTEDEEAQLLRTWRRS 171 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ir~~ 171 (257)
+|++-++. .+.+++.++++.++++| +|+|++.-.... .... .+ ........+.++.+++.
T Consensus 101 pvi~si~g----------~~~~~~~~~a~~~~~~g------ad~iElN~s~~~~~~~~--~g-~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 101 PVIASLNG----------VSAGGWVDYARQIEEAG------ADALELNIYALPTDPDI--SG-AEVEQRYLDILRAVKSA 161 (325)
T ss_pred eEEEEeCC----------CCHHHHHHHHHHHHhcC------CCEEEEeCCCCCCCCCc--cc-chHHHHHHHHHHHHHhc
Confidence 77777753 24677889999999999 888877543211 1110 00 00111234566788888
Q ss_pred hCCcEEEe--CCC-CHHHHHHHHHcCCCcEEEe
Q 025135 172 YQGTFICS--GGF-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 172 ~~~pvi~~--G~i-t~~~a~~~l~~g~~D~V~i 201 (257)
+++||++= ..+ ...+..+.+++.++|.|.+
T Consensus 162 ~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 162 VTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred cCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 89998764 344 3444444444445887766
No 316
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=95.42 E-value=0.18 Score=44.99 Aligned_cols=120 Identities=17% Similarity=0.266 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCC-chhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG-SIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLD 106 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGG-s~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~ 106 (257)
++-|+.|.+||.=+|--- ..- |. .-|.. || +-.| -.+.|++|+++|.- ||.-++... |
T Consensus 20 ~eqa~iae~aga~avm~l-------e~~--p~-d~r~~--ggv~R~~----~p~~I~~I~~~V~i-PVig~~kig--h-- 78 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMAL-------ERV--PA-DIRAS--GGVARMS----DPKMIKEIMDAVSI-PVMAKVRIG--H-- 78 (287)
T ss_pred HHHHHHHHHcCceEEEee-------ccC--ch-hhHhc--CCeeecC----CHHHHHHHHHhCCC-CEEEEeecc--H--
Confidence 466889999998776421 000 21 12333 44 2222 23568888888843 765555531 1
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHH
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRE 185 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~ 185 (257)
..=++.|+++| +|+|+-++. ..| ..++...+|+.+++|+++ +. |.+
T Consensus 79 ----------~~Ea~~L~~~G------vDiIDeTe~--------------lrP-ade~~~~~K~~f~vpfma--d~~~l~ 125 (287)
T TIGR00343 79 ----------FVEAQILEALG------VDYIDESEV--------------LTP-ADWTFHIDKKKFKVPFVC--GARDLG 125 (287)
T ss_pred ----------HHHHHHHHHcC------CCEEEccCC--------------CCc-HHHHHHHHHHHcCCCEEc--cCCCHH
Confidence 23367899999 999974432 111 235566788888888775 55 899
Q ss_pred HHHHHHHcCCCcEEEec
Q 025135 186 LGIQALAEDGADLVAYG 202 (257)
Q Consensus 186 ~a~~~l~~g~~D~V~ig 202 (257)
+|...++.| +|+|.--
T Consensus 126 EAlrai~~G-admI~Tt 141 (287)
T TIGR00343 126 EALRRINEG-AAMIRTK 141 (287)
T ss_pred HHHHHHHCC-CCEEecc
Confidence 999999998 9999765
No 317
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.41 E-value=1 Score=40.92 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=80.7
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE---EccCCCC--
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR---MSPAIDH-- 104 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr---ls~~~~~-- 104 (257)
..++|.++||+.|=+-++| =+++...+...++++-.+.. |- .|-.- +...++.
T Consensus 89 ~i~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~~-gv-~VEaElG~vgg~ed~~~ 146 (307)
T PRK05835 89 SCEKAVKAGFTSVMIDASH--------------------HAFEENLELTSKVVKMAHNA-GV-SVEAELGRLMGIEDNIS 146 (307)
T ss_pred HHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEecccCCccCCcc
Confidence 3456778888888887766 13466788899999887753 22 22222 2222211
Q ss_pred -CCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 105 -LDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 105 -~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
.+. ....+.+++.+|++ +.| +|++.++-++.++.+.. ++ .+....+.+++|++.+++|+++=|+-
T Consensus 147 ~~~~~~~~TdPeeA~~Fv~---~Tg------vD~LAvaiGt~HG~Yk~-~~---~p~L~f~~L~~I~~~~~iPLVLHGgS 213 (307)
T PRK05835 147 VDEKDAVLVNPKEAEQFVK---ESQ------VDYLAPAIGTSHGAFKF-KG---EPKLDFERLQEVKRLTNIPLVLHGAS 213 (307)
T ss_pred cccccccCCCHHHHHHHHH---hhC------CCEEEEccCccccccCC-CC---CCccCHHHHHHHHHHhCCCEEEeCCC
Confidence 000 00234566665544 568 88888776655443310 00 11233467888999999998776665
Q ss_pred -CHH----------------------HHHHHHHcCCCcEEEechHH
Q 025135 183 -TRE----------------------LGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 183 -t~~----------------------~a~~~l~~g~~D~V~igR~~ 205 (257)
.++ +..++++.| +-=|=+++-+
T Consensus 214 Gip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~G-I~KiNi~T~l 258 (307)
T PRK05835 214 AIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGG-INKVNTDTDL 258 (307)
T ss_pred CCchHHhhhhhhhccccccccCCCHHHHHHHHHcC-ceEEEeChHH
Confidence 444 677777776 4445555444
No 318
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.37 E-value=0.074 Score=45.43 Aligned_cols=82 Identities=12% Similarity=-0.031 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHH
Q 025135 114 GLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALA 192 (257)
Q Consensus 114 ~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~ 192 (257)
.+..++++..++.| .++||+..-... .......++.+++.+++||+.-+.+ ++++++.+++
T Consensus 31 ~~~~~~A~~~~~~G------A~~l~v~~~~~~------------~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~ 92 (217)
T cd00331 31 FDPVEIAKAYEKAG------AAAISVLTEPKY------------FQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARA 92 (217)
T ss_pred CCHHHHHHHHHHcC------CCEEEEEeCccc------------cCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHH
Confidence 34678999999999 899988642110 0011245677888889999876666 7788999999
Q ss_pred cCCCcEEEechHHhhCchHHHHH
Q 025135 193 EDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 193 ~g~~D~V~igR~~iadP~l~~k~ 215 (257)
.| +|.|.++-..+.. +..+++
T Consensus 93 ~G-ad~v~l~~~~~~~-~~~~~~ 113 (217)
T cd00331 93 AG-ADAVLLIVAALDD-EQLKEL 113 (217)
T ss_pred cC-CCEEEEeeccCCH-HHHHHH
Confidence 88 9999987766543 444333
No 319
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.35 E-value=0.12 Score=44.21 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQA 190 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~ 190 (257)
+.+++..+++.|.+.| +..|+++-. .+...+.++.+++.++.-+|+.|-+ ++++++++
T Consensus 23 ~~e~a~~~a~Ali~gG------i~~IEITl~---------------sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a 81 (211)
T COG0800 23 DVEEALPLAKALIEGG------IPAIEITLR---------------TPAALEAIRALAKEFPEALIGAGTVLNPEQARQA 81 (211)
T ss_pred CHHHHHHHHHHHHHcC------CCeEEEecC---------------CCCHHHHHHHHHHhCcccEEccccccCHHHHHHH
Confidence 4788999999999999 888887642 1223567788888888668888988 99999999
Q ss_pred HHcCCCcEEEechHHhhCchHHHHHHc-CCC
Q 025135 191 LAEDGADLVAYGRLFISNPDLVLRFKL-NAP 220 (257)
Q Consensus 191 l~~g~~D~V~igR~~iadP~l~~k~~~-g~~ 220 (257)
++.| ++|+.- | -.||++.+.... |.+
T Consensus 82 ~~aG-a~fiVs--P-~~~~ev~~~a~~~~ip 108 (211)
T COG0800 82 IAAG-AQFIVS--P-GLNPEVAKAANRYGIP 108 (211)
T ss_pred HHcC-CCEEEC--C-CCCHHHHHHHHhCCCc
Confidence 9998 887752 1 135666655443 444
No 320
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=95.35 E-value=0.44 Score=40.87 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEE
Q 025135 18 SEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGV 96 (257)
Q Consensus 18 ~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~v 96 (257)
-||-.++..++++ +.++|+|.+-+|+..| ..-+...+++.++. +.. .+.+
T Consensus 59 ~DIg~tv~~~~~~---~~~~gad~~Tvh~~~G-------------------------~~~l~~~~~~~~~~-~~~~~~v~ 109 (216)
T cd04725 59 GDIPNTVAAAAEA---LLGLGADAVTVHPYGG-------------------------SDMLKAALEAAEEK-GKGLFAVT 109 (216)
T ss_pred CchHHHHHHHHHH---HHhcCCCEEEECCcCC-------------------------HHHHHHHHHHHhcc-CCeEEEEE
Confidence 4566666665554 4467999999997653 12333444443332 232 3455
Q ss_pred EEccCCC--CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-C
Q 025135 97 RMSPAID--HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-Q 173 (257)
Q Consensus 97 rls~~~~--~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~ 173 (257)
.++.... ++........+....+++...+.| ++-+.++. ..+ .. +++.. +
T Consensus 110 ~lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g------~~G~V~~~---------------~~~---~~---i~~~~~~ 162 (216)
T cd04725 110 VLSSPGALDLQEGIPGSLEDLVERLAKLAREAG------VDGVVCGA---------------TEP---EA---LRRALGP 162 (216)
T ss_pred cCCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHC------CCEEEECC---------------cch---HH---HHHhhCC
Confidence 6663211 111111122345567788888887 44443322 111 11 23332 2
Q ss_pred CcEEEeCCCCHH----------HHHHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 174 GTFICSGGFTRE----------LGIQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 174 ~pvi~~G~it~~----------~a~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
.-++++.|+.++ ..++++..| +|++.+||+.+..++-...+
T Consensus 163 ~~~~ltPGI~~~~~~~dq~r~~~~~~a~~~g-~~~ivvGR~I~~a~~p~~~~ 213 (216)
T cd04725 163 DFLILTPGIGAQGSGDDQKRGGTPEDAIRAG-ADYIVVGRPITQAADPVAAA 213 (216)
T ss_pred CCeEEcCCcCCCCCccccccccCHHHHHHcC-CcEEEEChhhccCCCHHHHH
Confidence 235777888655 678888887 99999999999887744433
No 321
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.34 E-value=1 Score=38.76 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=34.4
Q ss_pred HHHHHHHHHhC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchH
Q 025135 163 QLLRTWRRSYQ-GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDL 211 (257)
Q Consensus 163 ~~~~~ir~~~~-~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l 211 (257)
.+++.++..++ ++++.+||++++.+.+.++.| +.+.+|+..+.+.++
T Consensus 144 ~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag--~v~~vggs~L~~~~~ 191 (212)
T PRK05718 144 KMLKALAGPFPDVRFCPTGGISPANYRDYLALP--NVLCIGGSWMVPKDA 191 (212)
T ss_pred HHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCC--CEEEEEChHhCCcch
Confidence 44566666654 679999999999999999998 445555666665544
No 322
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=95.29 E-value=0.23 Score=43.21 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=31.1
Q ss_pred HhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchH
Q 025135 171 SYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDL 211 (257)
Q Consensus 171 ~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l 211 (257)
..+.-|-++.|++.+....+..--.++=|.||..++++--+
T Consensus 182 ~lGL~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsiia~Al~ 222 (239)
T PRK05265 182 SLGLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARALF 222 (239)
T ss_pred HcCCEEecCCCCCHHhHHHHhhCCCCeEEccCHHHHHHHHH
Confidence 34566777777888887776555678999999999988644
No 323
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=95.21 E-value=0.4 Score=41.08 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=83.1
Q ss_pred CCCCCChhhHHHHHHHHH--------------HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhh
Q 025135 11 NPQALQTSEIPEVIDQYR--------------QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCR 76 (257)
Q Consensus 11 ~p~~lt~~eI~~ii~~f~--------------~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r 76 (257)
-||..|.++.++++...- +..+.+.+.++|.||||+-.
T Consensus 34 SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e---------------------------- 85 (208)
T COG0135 34 SPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE---------------------------- 85 (208)
T ss_pred CCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC----------------------------
Confidence 578888888888887763 12355567899999999765
Q ss_pred HHHHHHHHHHHHhCCCeEE--EEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCC
Q 025135 77 FLMQLVREVIVAIGADRVG--VRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGR 154 (257)
Q Consensus 77 ~~~eiv~aiR~~vg~~~v~--vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~ 154 (257)
..+-++.+|+..+- +|+ ++++.. .+ .... ....+ .++.+-+........+ +
T Consensus 86 -~~~~~~~l~~~~~~-~v~kai~v~~~-----------~~--~~~~--~~~~~-----~~d~~LlDa~~~~~~G-----G 138 (208)
T COG0135 86 -DPEYIDQLKEELGV-PVIKAISVSEE-----------GD--LELA--AREEG-----PVDAILLDAKVPGLPG-----G 138 (208)
T ss_pred -CHHHHHHHHhhcCC-ceEEEEEeCCc-----------cc--hhhh--hhccC-----CccEEEEcCCCCCCCC-----C
Confidence 23446777777532 443 344321 00 0111 11222 1555443322111111 1
Q ss_pred CCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 155 PGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 155 ~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
- +....|..+..+ ....|+++.||++++...++|+.+...+|=+..+.=++|
T Consensus 139 t-G~~fDW~~l~~~--~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 139 T-GQTFDWNLLPKL--RLSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred C-CcEECHHHhccc--cccCCEEEECCCCHHHHHHHHHhcCCceEEeccccccCC
Confidence 1 233334443333 357789999999999999999998558888877765554
No 324
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.20 E-value=0.4 Score=42.00 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCC--
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAI-- 102 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~-- 102 (257)
++..+.+++..++|.+||.|-.+. -..+.|+++|++. .+|..|+....
T Consensus 89 ~~~~~~~~~l~~aGa~gv~iED~~----------------------------~~~~~i~ai~~a~--i~ViaRtd~~pq~ 138 (240)
T cd06556 89 TAAFELAKTFMRAGAAGVKIEGGE----------------------------WHIETLQMLTAAA--VPVIAHTGLTPQS 138 (240)
T ss_pred HHHHHHHHHHHHcCCcEEEEcCcH----------------------------HHHHHHHHHHHcC--CeEEEEeCCchhh
Confidence 344666777888999999986541 1345677777653 36777876421
Q ss_pred -----CCCC-CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcE
Q 025135 103 -----DHLD-ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTF 176 (257)
Q Consensus 103 -----~~~~-~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pv 176 (257)
+|.. +......+++++-++.++++| +|.+-+... ..+.+++|.+.+++|+
T Consensus 139 ~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AG------Ad~i~~e~~------------------~~e~~~~i~~~~~~P~ 194 (240)
T cd06556 139 VNTSGGDEGQYRGDEAGEQLIADALAYAPAG------ADLIVMECV------------------PVELAKQITEALAIPL 194 (240)
T ss_pred hhccCCceeeccCHHHHHHHHHHHHHHHHcC------CCEEEEcCC------------------CHHHHHHHHHhCCCCE
Confidence 1110 111234667888899999999 666654321 1356677888899998
Q ss_pred EEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 177 ICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 177 i~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
+++|.=.--+.+ .| -..|++++...+ .|-++++..+
T Consensus 195 ~~~gag~~~dgq-~l--v~~d~lg~~~~~--~p~f~~~~~~ 230 (240)
T cd06556 195 AGIGAGSGTDGQ-FL--VLADAFGITGGH--IPKFAKNFHA 230 (240)
T ss_pred EEEecCcCCCce-EE--eHHhhhcccCCC--CCchHHHHhh
Confidence 876542100000 01 013455554443 6777776654
No 325
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.18 E-value=0.87 Score=41.12 Aligned_cols=136 Identities=12% Similarity=0.063 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCc-hhhHhhHHHHHHHHHHHHhCC-C-eEEEEEccCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGS-IENRCRFLMQLVREVIVAIGA-D-RVGVRMSPAIDH 104 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs-~enR~r~~~eiv~aiR~~vg~-~-~v~vrls~~~~~ 104 (257)
.+.+++..++|.-||.|--.. ..||+..++|. +.. .....+-|++++++... + .|..|....
T Consensus 95 ~r~V~~~~~aGaagi~IEDq~-----------~pK~cg~~~~k~lv~-~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~--- 159 (294)
T TIGR02319 95 WRATREFERVGIVGYHLEDQV-----------NPKRCGHLEGKRLIS-TEEMTGKIEAAVEAREDEDFTIIARTDAR--- 159 (294)
T ss_pred HHHHHHHHHcCCeEEEEECCC-----------CccccCCCCCccccC-HHHHHHHHHHHHHhccCCCeEEEEEeccc---
Confidence 345677788999999885321 23566555553 222 23344556666665443 3 466787642
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcE---EEeCC
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTF---ICSGG 181 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pv---i~~G~ 181 (257)
. ....+++++=++...++| .|.|-+..+ ...+.++++.+.++.|+ +..|+
T Consensus 160 ~----~~g~deaI~Ra~aY~eAG------AD~ifi~~~-----------------~~~~ei~~~~~~~~~P~~~nv~~~~ 212 (294)
T TIGR02319 160 E----SFGLDEAIRRSREYVAAG------ADCIFLEAM-----------------LDVEEMKRVRDEIDAPLLANMVEGG 212 (294)
T ss_pred c----cCCHHHHHHHHHHHHHhC------CCEEEecCC-----------------CCHHHHHHHHHhcCCCeeEEEEecC
Confidence 1 124788888899999999 676655331 01244667778888886 33343
Q ss_pred CCH-HHHHHHHHcCCCcEEEechHHh
Q 025135 182 FTR-ELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 182 it~-~~a~~~l~~g~~D~V~igR~~i 206 (257)
-++ -...++-+-| +.+|.++-.++
T Consensus 213 ~~p~~s~~eL~~lG-~~~v~~~~~~~ 237 (294)
T TIGR02319 213 KTPWLTTKELESIG-YNLAIYPLSGW 237 (294)
T ss_pred CCCCCCHHHHHHcC-CcEEEEcHHHH
Confidence 333 2344555555 99999996554
No 326
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=95.16 E-value=0.79 Score=39.24 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=27.5
Q ss_pred hCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhh
Q 025135 172 YQGTFICSGGFTRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 172 ~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
++.|+++.||++++...++++.-...+|=+..+.=.
T Consensus 153 ~~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~ 188 (210)
T PRK01222 153 LAKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVES 188 (210)
T ss_pred cCCCEEEECCCCHHHHHHHHHhcCCCEEEecCceEC
Confidence 467999999999999999998645666666555443
No 327
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.09 E-value=0.99 Score=43.35 Aligned_cols=135 Identities=20% Similarity=0.246 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC---eEEEEE
Q 025135 22 EVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD---RVGVRM 98 (257)
Q Consensus 22 ~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~---~v~vrl 98 (257)
.+++.|+ ++|.+.|.|-+-|-.++ |..+-+..-++++|+. |.. .+.+..
T Consensus 105 dvv~~fv---~~a~~~Gidi~Rifd~l------------------------nd~~n~~~ai~~ak~~-G~~~~~~i~yt~ 156 (468)
T PRK12581 105 DIVDKFI---SLSAQNGIDVFRIFDAL------------------------NDPRNIQQALRAVKKT-GKEAQLCIAYTT 156 (468)
T ss_pred hHHHHHH---HHHHHCCCCEEEEcccC------------------------CCHHHHHHHHHHHHHc-CCEEEEEEEEEe
Confidence 5666664 46678899999886654 4577788888888864 333 255555
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEE
Q 025135 99 SPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFIC 178 (257)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~ 178 (257)
++. .+.+...++++.+++.| ++.|.+.... + ...+......++.+|+..++||-.
T Consensus 157 sp~---------~t~~y~~~~a~~l~~~G------ad~I~IkDta----G------~l~P~~v~~Lv~alk~~~~~pi~~ 211 (468)
T PRK12581 157 SPV---------HTLNYYLSLVKELVEMG------ADSICIKDMA----G------ILTPKAAKELVSGIKAMTNLPLIV 211 (468)
T ss_pred CCc---------CcHHHHHHHHHHHHHcC------CCEEEECCCC----C------CcCHHHHHHHHHHHHhccCCeEEE
Confidence 542 35788899999999999 7877765421 0 112233445677788877777643
Q ss_pred eCCCC----HHHHHHHHHcCCCcEE-----EechHHhhCchH
Q 025135 179 SGGFT----RELGIQALAEDGADLV-----AYGRLFISNPDL 211 (257)
Q Consensus 179 ~G~it----~~~a~~~l~~g~~D~V-----~igR~~iadP~l 211 (257)
=+.-| ......+++.| ||.| .||++. .||.+
T Consensus 212 H~Hnt~GlA~An~laAieAG-ad~vD~ai~g~g~ga-gN~~t 251 (468)
T PRK12581 212 HTHATSGISQMTYLAAVEAG-ADRIDTALSPFSEGT-SQPAT 251 (468)
T ss_pred EeCCCCccHHHHHHHHHHcC-CCEEEeeccccCCCc-CChhH
Confidence 22213 55677889988 7766 455553 47754
No 328
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.05 E-value=0.19 Score=43.26 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCC-c--EEEeCCC-CHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQG-T--FICSGGF-TRELG 187 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~-p--vi~~G~i-t~~~a 187 (257)
+.+++..+++.|.+.| +..++++-. .+...+.++.+++.++. | +++.|.+ |++++
T Consensus 23 ~~~~a~~~~~al~~~G------i~~iEit~~---------------~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~ 81 (213)
T PRK06552 23 SKEEALKISLAVIKGG------IKAIEVTYT---------------NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTA 81 (213)
T ss_pred CHHHHHHHHHHHHHCC------CCEEEEECC---------------CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHH
Confidence 4788999999999999 788887642 11234667788887753 3 6777888 99999
Q ss_pred HHHHHcCCCcEEEechHHhhCchHHHHHHc-CCC
Q 025135 188 IQALAEDGADLVAYGRLFISNPDLVLRFKL-NAP 220 (257)
Q Consensus 188 ~~~l~~g~~D~V~igR~~iadP~l~~k~~~-g~~ 220 (257)
+++++.| ++|++ -| ..||++.+..++ |.+
T Consensus 82 ~~a~~aG-A~Fiv--sP-~~~~~v~~~~~~~~i~ 111 (213)
T PRK06552 82 RLAILAG-AQFIV--SP-SFNRETAKICNLYQIP 111 (213)
T ss_pred HHHHHcC-CCEEE--CC-CCCHHHHHHHHHcCCC
Confidence 9999998 99988 22 467888877664 444
No 329
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.02 E-value=0.86 Score=43.58 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=79.6
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSD 111 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~ 111 (257)
++|.++|.|.|.|-.+... .+-+.+.++.+|+. |. .+.+-++.. . . .-.
T Consensus 103 ~~A~~~Gvd~irif~~lnd------------------------~~n~~~~v~~ak~~-G~-~v~~~i~~t-~-~---p~~ 151 (448)
T PRK12331 103 QKSVENGIDIIRIFDALND------------------------VRNLETAVKATKKA-GG-HAQVAISYT-T-S---PVH 151 (448)
T ss_pred HHHHHCCCCEEEEEEecCc------------------------HHHHHHHHHHHHHc-CC-eEEEEEEee-c-C---CCC
Confidence 3556889999988765411 12356677777764 43 232333321 1 0 113
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeC----CCCHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG----GFTRELG 187 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----~it~~~a 187 (257)
+.+...++++.+.++| ++.|.+.... + ...+......++.+|+.+++||-.=+ |+....+
T Consensus 152 ~~~~~~~~a~~l~~~G------ad~I~i~Dt~----G------~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~ 215 (448)
T PRK12331 152 TIDYFVKLAKEMQEMG------ADSICIKDMA----G------ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTY 215 (448)
T ss_pred CHHHHHHHHHHHHHcC------CCEEEEcCCC----C------CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHH
Confidence 5778899999999999 7877765421 1 11233445677889998887764422 2235677
Q ss_pred HHHHHcCCCcEE-----EechHHhhCchH
Q 025135 188 IQALAEDGADLV-----AYGRLFISNPDL 211 (257)
Q Consensus 188 ~~~l~~g~~D~V-----~igR~~iadP~l 211 (257)
..+++.| ||.| .||.+ ..||.+
T Consensus 216 laAieaG-ad~vD~sv~glg~g-aGN~~t 242 (448)
T PRK12331 216 LKAIEAG-ADIIDTAISPFAGG-TSQPAT 242 (448)
T ss_pred HHHHHcC-CCEEEeeccccCCC-cCCHhH
Confidence 7899998 8776 45555 567754
No 330
>PLN02417 dihydrodipicolinate synthase
Probab=94.98 E-value=0.87 Score=40.62 Aligned_cols=126 Identities=12% Similarity=0.115 Sum_probs=75.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-
Q 025135 14 ALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD- 92 (257)
Q Consensus 14 ~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~- 92 (257)
.+..+.+.+.++ ...+.|.|||=+.+..| +|.+ =|.+.|.+++..+++. +...
T Consensus 18 ~iD~~~~~~~i~-------~l~~~Gv~Gi~~~GstG----E~~~-----------ls~~Er~~~~~~~~~~----~~~~~ 71 (280)
T PLN02417 18 RFDLEAYDSLVN-------MQIENGAEGLIVGGTTG----EGQL-----------MSWDEHIMLIGHTVNC----FGGKI 71 (280)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECccCc----chhh-----------CCHHHHHHHHHHHHHH----hCCCC
Confidence 344555555544 45679999999887654 2221 1346677765555554 3333
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY 172 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 172 (257)
+|.+=++. .+.++++++++..+++| +|.+-+..|.|..+ .......+.+.|.+..
T Consensus 72 pvi~gv~~----------~~t~~~i~~a~~a~~~G------adav~~~~P~y~~~---------~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 72 KVIGNTGS----------NSTREAIHATEQGFAVG------MHAALHINPYYGKT---------SQEGLIKHFETVLDMG 126 (280)
T ss_pred cEEEECCC----------ccHHHHHHHHHHHHHcC------CCEEEEcCCccCCC---------CHHHHHHHHHHHHhhC
Confidence 55544442 34688999999999999 88888877755322 1222334445566553
Q ss_pred CCcEEE------eCC-CCHHHHHHHHH
Q 025135 173 QGTFIC------SGG-FTRELGIQALA 192 (257)
Q Consensus 173 ~~pvi~------~G~-it~~~a~~~l~ 192 (257)
||+. +|- ++++...++.+
T Consensus 127 --pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 127 --PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred --CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 8653 232 37887777764
No 331
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.96 E-value=1.3 Score=39.49 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=52.0
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeC--CCcccCCCcCCCCCCCchhHHHHHHHHHH
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ--PRYTAYGQTESGRPGTEDEEAQLLRTWRR 170 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 170 (257)
++++=|.. .+.+++...++.++++| +|+|+++- |.....+..+ ........+.++.+|+
T Consensus 91 p~ivsi~g----------~~~~~~~~~a~~~~~~G------~d~iElN~~cP~~~~~g~~~---~~~~~~~~eiv~~vr~ 151 (296)
T cd04740 91 PVIASIAG----------STVEEFVEVAEKLADAG------ADAIELNISCPNVKGGGMAF---GTDPEAVAEIVKAVKK 151 (296)
T ss_pred cEEEEEec----------CCHHHHHHHHHHHHHcC------CCEEEEECCCCCCCCCcccc---cCCHHHHHHHHHHHHh
Confidence 67776654 24678899999999999 88887653 3221110000 0011223456778888
Q ss_pred HhCCcEEEe--CCC-CHHHHHHHHHcCCCcEEEe
Q 025135 171 SYQGTFICS--GGF-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 171 ~~~~pvi~~--G~i-t~~~a~~~l~~g~~D~V~i 201 (257)
.+++||.+= ..+ +..+..+.+++.++|+|.+
T Consensus 152 ~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 152 ATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred ccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 888897752 233 2333333344444998765
No 332
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.93 E-value=0.53 Score=42.35 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=67.9
Q ss_pred cCCcCCCCCCc--hhhHhhHH---HHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCc
Q 025135 60 INDRTDEYGGS--IENRCRFL---MQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAK 133 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~~---~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~ 133 (257)
.|||-+-+-+- .+|-..+. .+.|+++|+..+.. +|-|... +.+++.+ ..++|
T Consensus 160 ~~HR~gLsD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~------------tleea~~----a~~ag------ 217 (290)
T PRK06559 160 YNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVE------------SLAAAEE----AAAAG------ 217 (290)
T ss_pred cccCCCCcceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECC------------CHHHHHH----HHHcC------
Confidence 47777776653 45666665 45566777767633 5665543 3555443 44678
Q ss_pred eeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 134 LTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 134 vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+|.|-+..- ......+.+..+++ ++.+-++||||++.+.++...| +|+|++|....
T Consensus 218 aDiImLDnm--------------spe~l~~av~~~~~--~~~leaSGGI~~~ni~~yA~tG-VD~Is~galth 273 (290)
T PRK06559 218 ADIIMLDNM--------------SLEQIEQAITLIAG--RSRIECSGNIDMTTISRFRGLA-IDYVSSGSLTH 273 (290)
T ss_pred CCEEEECCC--------------CHHHHHHHHHHhcC--ceEEEEECCCCHHHHHHHHhcC-CCEEEeCcccc
Confidence 777765331 11112222222332 4568899999999999998887 99999998776
No 333
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.96 Score=39.63 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEecccc
Q 025135 18 SEIPEVIDQYRQAALNAIQAGFDGIEIHGAH 48 (257)
Q Consensus 18 ~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~ 48 (257)
.||-.++..+++ .+.+.|.|.|-+|+..
T Consensus 72 ~DIpnT~~~~~~---~~~~~g~d~vtvH~~~ 99 (240)
T COG0284 72 ADIPNTVALAAK---AAADLGADAVTVHAFG 99 (240)
T ss_pred ccchHHHHHHHH---HhhhcCCcEEEEeCcC
Confidence 456666655544 4778999999999655
No 334
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=94.88 E-value=0.63 Score=39.37 Aligned_cols=130 Identities=17% Similarity=0.246 Sum_probs=84.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeE
Q 025135 15 LQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRV 94 (257)
Q Consensus 15 lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v 94 (257)
|=.++.++.|++|+ .||.+.+-+|.-- +++ +.++++.||+. |- .+
T Consensus 71 mMV~~Peq~V~~~a-------~agas~~tfH~E~---------------~q~-----------~~~lv~~ir~~-Gm-k~ 115 (224)
T KOG3111|consen 71 MMVENPEQWVDQMA-------KAGASLFTFHYEA---------------TQK-----------PAELVEKIREK-GM-KV 115 (224)
T ss_pred EeecCHHHHHHHHH-------hcCcceEEEEEee---------------ccC-----------HHHHHHHHHHc-CC-ee
Confidence 44566778888875 4899999988632 121 67889999974 21 57
Q ss_pred EEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEE--EeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh
Q 025135 95 GVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYL--HVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY 172 (257)
Q Consensus 95 ~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 172 (257)
++-|.+. .+.+....++ +. +|++ -..+|.+.... .-.....-.+.+|+.+
T Consensus 116 G~alkPg---------T~Ve~~~~~~---~~--------~D~vLvMtVePGFGGQk--------Fme~mm~KV~~lR~ky 167 (224)
T KOG3111|consen 116 GLALKPG---------TPVEDLEPLA---EH--------VDMVLVMTVEPGFGGQK--------FMEDMMPKVEWLREKY 167 (224)
T ss_pred eEEeCCC---------CcHHHHHHhh---cc--------ccEEEEEEecCCCchhh--------hHHHHHHHHHHHHHhC
Confidence 7777763 3454433333 22 3332 22356553322 1122233455688888
Q ss_pred CCcEE-EeCCCCHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 173 QGTFI-CSGGFTRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 173 ~~pvi-~~G~it~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
+.+.| +-||++++.+..+.+.| ++++..|.+.+.-
T Consensus 168 p~l~ievDGGv~~~ti~~~a~AG-AN~iVaGsavf~a 203 (224)
T KOG3111|consen 168 PNLDIEVDGGVGPSTIDKAAEAG-ANMIVAGSAVFGA 203 (224)
T ss_pred CCceEEecCCcCcchHHHHHHcC-CCEEEecceeecC
Confidence 87777 66999999999999998 9999999998853
No 335
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=94.87 E-value=2.8 Score=38.70 Aligned_cols=152 Identities=11% Similarity=0.042 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE--
Q 025135 20 IPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR-- 97 (257)
Q Consensus 20 I~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr-- 97 (257)
++.+++.-.+..++|.++||+.|-|.+++ =+++...++..++++-... .|- .|-.-
T Consensus 105 ~~~~~~a~~~~~~~a~~~GftSVMiDgS~--------------------lp~eENI~~TkevVe~Ah~-~gv-sVEaElG 162 (345)
T cd00946 105 FDGLLEADEEYFKQHGEPLFSSHMLDLSE--------------------EPLEENIEICKKYLERMAK-INM-WLEMEIG 162 (345)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEeeCCC--------------------CCHHHHHHHHHHHHHHHHH-cCC-EEEEEec
Confidence 44444444444555666677777666655 1467888999999988754 332 22222
Q ss_pred -EccCCCCCCCC------CCCcHHHHHHHHHHHHh-cCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHH-
Q 025135 98 -MSPAIDHLDAT------DSDPLGLGLAVIQGLNK-LQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTW- 168 (257)
Q Consensus 98 -ls~~~~~~~~~------~~~~~~~~~~l~~~L~~-~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i- 168 (257)
+...++..... ...+.+++.+|++.+.. .| +|.+.++-++.++.+.. + .+....+.+++|
T Consensus 163 ~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tg------vD~LAvaiGt~HG~Y~~--~---~p~L~~~~L~~I~ 231 (345)
T cd00946 163 ITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISP------NFSIAAAFGNVHGVYKP--G---NVKLQPEILGEHQ 231 (345)
T ss_pred ccCCcccCcccccccccccCCCHHHHHHHHHHhccCCC------ceeeeeeccccccCCCC--C---CCccCHHHHHHHH
Confidence 22222110000 12457788888776543 36 78887765555443310 0 111223455666
Q ss_pred ---HHHh------CCcEEEeCC--CCHHHHHHHHHcCCCcEEEechHH
Q 025135 169 ---RRSY------QGTFICSGG--FTRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 169 ---r~~~------~~pvi~~G~--it~~~a~~~l~~g~~D~V~igR~~ 205 (257)
++.+ ++|++.=|+ +..++..++++.| +-=|=++.-+
T Consensus 232 ~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~G-I~KiNi~T~l 278 (345)
T cd00946 232 DYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYG-VVKMNIDTDT 278 (345)
T ss_pred HHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcC-CeeEEeCcHH
Confidence 5555 678666555 4678899999998 4445555444
No 336
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.86 E-value=0.47 Score=42.51 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=68.0
Q ss_pred cCCcCCCCCCc--hhhHhhH-------HHHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCc
Q 025135 60 INDRTDEYGGS--IENRCRF-------LMQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQID 129 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~-------~~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~ 129 (257)
.|+|-+-+-+- .+|-.++ +.+.|+.+|+..+.. +|.|-.. +.+++.+ ..++|
T Consensus 152 ~~HR~gLsd~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~------------slee~~e----a~~~g-- 213 (281)
T PRK06543 152 HNHRYSLSDAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVD------------RLDQIEP----VLAAG-- 213 (281)
T ss_pred cCcCCCCCceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeC------------CHHHHHH----HHhcC--
Confidence 46776665553 4566665 356677777777643 4665553 3555433 34678
Q ss_pred cCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 130 QGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 130 ~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
+|.|-+..- ........+..+++ ...+.++||||++.+.++.+.| +|+|++|....+=|
T Consensus 214 ----aDiImLDn~--------------s~e~l~~av~~~~~--~~~leaSGgI~~~ni~~yA~tG-VD~Is~galths~~ 272 (281)
T PRK06543 214 ----VDTIMLDNF--------------SLDDLREGVELVDG--RAIVEASGNVNLNTVGAIASTG-VDVISVGALTHSVR 272 (281)
T ss_pred ----CCEEEECCC--------------CHHHHHHHHHHhCC--CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCc
Confidence 777765331 11111222222322 2358899999999999998887 99999998665544
No 337
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.81 E-value=1 Score=44.60 Aligned_cols=135 Identities=15% Similarity=0.137 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-e--EEEEE
Q 025135 22 EVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-R--VGVRM 98 (257)
Q Consensus 22 ~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~--v~vrl 98 (257)
.+++.|++ +|.+.|.|-+-|.-++ |..|-+..-++++|+. |.. . |.+-.
T Consensus 96 ~vv~~~v~---~a~~~Gidv~Rifd~l------------------------nd~~n~~~~i~~~k~~-G~~~~~~i~yt~ 147 (596)
T PRK14042 96 DVVRAFVK---LAVNNGVDVFRVFDAL------------------------NDARNLKVAIDAIKSH-KKHAQGAICYTT 147 (596)
T ss_pred HHHHHHHH---HHHHcCCCEEEEcccC------------------------cchHHHHHHHHHHHHc-CCEEEEEEEecC
Confidence 55666655 5568999999987665 4567777888898874 543 1 33334
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEE
Q 025135 99 SPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFIC 178 (257)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~ 178 (257)
|+ -.+.+...++++.+.++| ++.|.+.... + ...+......++.+|+.+++||-.
T Consensus 148 sp---------~~t~e~~~~~ak~l~~~G------ad~I~IkDta----G------~l~P~~v~~lv~alk~~~~ipi~~ 202 (596)
T PRK14042 148 SP---------VHTLDNFLELGKKLAEMG------CDSIAIKDMA----G------LLTPTVTVELYAGLKQATGLPVHL 202 (596)
T ss_pred CC---------CCCHHHHHHHHHHHHHcC------CCEEEeCCcc----c------CCCHHHHHHHHHHHHhhcCCEEEE
Confidence 43 146888999999999999 7777765421 0 112233446778899988888644
Q ss_pred eCCCC----HHHHHHHHHcCCCcEEE-----echHHhhCchH
Q 025135 179 SGGFT----RELGIQALAEDGADLVA-----YGRLFISNPDL 211 (257)
Q Consensus 179 ~G~it----~~~a~~~l~~g~~D~V~-----igR~~iadP~l 211 (257)
=..-| ......+++.| ||.|= ||... .||.+
T Consensus 203 H~Hnt~Gla~an~laAieaG-ad~iD~ai~glGg~t-Gn~~t 242 (596)
T PRK14042 203 HSHSTSGLASICHYEAVLAG-CNHIDTAISSFSGGA-SHPPT 242 (596)
T ss_pred EeCCCCCcHHHHHHHHHHhC-CCEEEeccccccCCC-CcHhH
Confidence 22223 45667888888 88764 44442 56654
No 338
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.79 E-value=0.49 Score=43.40 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG 195 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~ 195 (257)
.+.++.|.+++. .+|+|.+....- -.....+.++.||+.++.+.+..|++ |+++|+.+++.|
T Consensus 109 ~er~~~L~~a~~----~~d~iviD~AhG------------hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG- 171 (343)
T TIGR01305 109 LEKMTSILEAVP----QLKFICLDVANG------------YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSG- 171 (343)
T ss_pred HHHHHHHHhcCC----CCCEEEEECCCC------------cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC-
Confidence 345566666631 177776543210 11234567888999998777777888 999999999998
Q ss_pred CcEEEec
Q 025135 196 ADLVAYG 202 (257)
Q Consensus 196 ~D~V~ig 202 (257)
+|.|-+|
T Consensus 172 AD~ikVg 178 (343)
T TIGR01305 172 ADIVKVG 178 (343)
T ss_pred CCEEEEc
Confidence 9998666
No 339
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.77 E-value=2 Score=38.18 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=52.7
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY 172 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 172 (257)
+|.+=|.. .+.+++.+.++.+++.| +|+|++.-....... ............+.++.+|+.+
T Consensus 100 pvi~si~g----------~~~~~~~~~a~~~~~~G------~d~ielN~~cP~~~~--~~~~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 100 PLIASVGG----------SSKEDYVELARKIERAG------AKALELNLSCPNVGG--GRQLGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred eEEEEecc----------CCHHHHHHHHHHHHHhC------CCEEEEEcCCCCCCC--CcccccCHHHHHHHHHHHHHcc
Confidence 67766653 24678889999999999 788876532111100 0000001122335677888888
Q ss_pred CCcEEEe--CCCCHH----HHHHHHHcCCCcEEEec
Q 025135 173 QGTFICS--GGFTRE----LGIQALAEDGADLVAYG 202 (257)
Q Consensus 173 ~~pvi~~--G~it~~----~a~~~l~~g~~D~V~ig 202 (257)
+.||++= +.++.+ .++.+.+.| +|+|.+.
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~~l~~~G-ad~i~~~ 196 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAKAAERAG-ADGLTAI 196 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcC-CCEEEEE
Confidence 8897753 444633 334444445 9999874
No 340
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=94.73 E-value=0.47 Score=45.51 Aligned_cols=143 Identities=24% Similarity=0.261 Sum_probs=81.0
Q ss_pred cCCCEEEecccc-------cchhhhcCCCCc---------------CCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeE
Q 025135 37 AGFDGIEIHGAH-------GYLIDQFLKDGI---------------NDRTDEYGGSIENRCRFLMQLVREVIVAIGADRV 94 (257)
Q Consensus 37 aGfDgVEIh~a~-------GyLl~qFlSp~~---------------N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v 94 (257)
...|+|||..|. |.|...=.++.. +..-|-|+ +| =+...|..+|++.+..+|
T Consensus 233 ~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiys--ie----DLaqlI~dLk~~~~~~~I 306 (485)
T COG0069 233 ANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYS--IE----DLAQLIKDLKEANPWAKI 306 (485)
T ss_pred CccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccC--HH----HHHHHHHHHHhcCCCCeE
Confidence 456788886554 445544333221 24456665 23 356668888887765579
Q ss_pred EEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcC--CCCCCCchhHHHHHHHHHHHh
Q 025135 95 GVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTE--SGRPGTEDEEAQLLRTWRRSY 172 (257)
Q Consensus 95 ~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ir~~~ 172 (257)
+||+... ...+. ++--..+++ +|+|.+..- --..+.++ +-.+.+-|+.. .+...-+.+
T Consensus 307 ~VKlva~---------~~v~~---iaagvakA~------AD~I~IdG~-~GGTGAsP~~~~~~~GiP~e~-glae~~q~L 366 (485)
T COG0069 307 SVKLVAE---------HGVGT---IAAGVAKAG------ADVITIDGA-DGGTGASPLTSIDHAGIPWEL-GLAETHQTL 366 (485)
T ss_pred EEEEecc---------cchHH---HHhhhhhcc------CCEEEEcCC-CCcCCCCcHhHhhcCCchHHH-HHHHHHHHH
Confidence 9999863 12222 222256677 899988631 11111110 00111223222 222222221
Q ss_pred -------CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 173 -------QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 173 -------~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
.+-|++.|++ |..|...++.=| +|.|.+|++.+
T Consensus 367 ~~~glRd~v~l~~~Ggl~Tg~DVaka~aLG-Ad~v~~gTa~l 407 (485)
T COG0069 367 VLNGLRDKVKLIADGGLRTGADVAKAAALG-ADAVGFGTAAL 407 (485)
T ss_pred HHcCCcceeEEEecCCccCHHHHHHHHHhC-cchhhhchHHH
Confidence 2348888999 999999888888 99999999876
No 341
>PRK08227 autoinducer 2 aldolase; Validated
Probab=94.68 E-value=2.3 Score=37.80 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=73.9
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCC-C-eEEEEEccCCCCCCCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGA-D-RVGVRMSPAIDHLDAT 108 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~-~-~v~vrls~~~~~~~~~ 108 (257)
.+.|.+.|.|+|-+|.-- |+..|++ -+.++ ..|.+.+.. . |+.+ +.+....
T Consensus 100 VeeAvrlGAdAV~~~v~~-------------------Gs~~E~~--~l~~l-~~v~~ea~~~G~Plla-~~prG~~---- 152 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFI-------------------GSEYEHQ--SIKNI-IQLVDAGLRYGMPVMA-VTAVGKD---- 152 (264)
T ss_pred HHHHHHCCCCEEEEEEec-------------------CCHHHHH--HHHHH-HHHHHHHHHhCCcEEE-EecCCCC----
Confidence 344788999999887432 3333433 33333 333333322 2 6555 4332111
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC--CH--
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF--TR-- 184 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i--t~-- 184 (257)
..+..+.....++...++| .|++.+.- + . +.++++.+..++||+..||= +.
T Consensus 153 ~~~~~~~ia~aaRiaaELG------ADiVK~~y---------------~--~--~~f~~vv~a~~vPVviaGG~k~~~~~ 207 (264)
T PRK08227 153 MVRDARYFSLATRIAAEMG------AQIIKTYY---------------V--E--EGFERITAGCPVPIVIAGGKKLPERD 207 (264)
T ss_pred cCchHHHHHHHHHHHHHHc------CCEEecCC---------------C--H--HHHHHHHHcCCCcEEEeCCCCCCHHH
Confidence 1123344455677778889 88886421 1 1 33455666778998877774 33
Q ss_pred --HHHHHHHHcCCCcEEEechHHhhCch
Q 025135 185 --ELGIQALAEDGADLVAYGRLFISNPD 210 (257)
Q Consensus 185 --~~a~~~l~~g~~D~V~igR~~iadP~ 210 (257)
+...++++.| +-.|++||=....|+
T Consensus 208 ~L~~v~~ai~aG-a~Gv~~GRNIfQ~~~ 234 (264)
T PRK08227 208 ALEMCYQAIDEG-ASGVDMGRNIFQSEH 234 (264)
T ss_pred HHHHHHHHHHcC-CceeeechhhhccCC
Confidence 3456778766 999999999887654
No 342
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.66 E-value=1.6 Score=39.45 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHh-CCC-eEEEEEccCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAI-GAD-RVGVRMSPAIDHL 105 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~v-g~~-~v~vrls~~~~~~ 105 (257)
.+.+++..++|.-||.|--.. ..+|+...+|...-......+-|++++++. +++ .|..|.....
T Consensus 96 ~r~V~~~~~aGaagi~IEDq~-----------~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~--- 161 (292)
T PRK11320 96 ARTVKSMIKAGAAAVHIEDQV-----------GAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALA--- 161 (292)
T ss_pred HHHHHHHHHcCCeEEEEecCC-----------CccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCccc---
Confidence 344677788999999884321 134555544421222334455566666654 344 3667776431
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEe---CCC
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICS---GGF 182 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~---G~i 182 (257)
....+++++=++...++| .|.|-+..+ . ..+.++++.+.++.|++++ ++-
T Consensus 162 ----~~g~deAI~Ra~aY~eAG------AD~ifi~~~---------------~--~~~~i~~~~~~~~~Pl~~n~~~~~~ 214 (292)
T PRK11320 162 ----VEGLDAAIERAQAYVEAG------ADMIFPEAM---------------T--ELEMYRRFADAVKVPILANITEFGA 214 (292)
T ss_pred ----ccCHHHHHHHHHHHHHcC------CCEEEecCC---------------C--CHHHHHHHHHhcCCCEEEEeccCCC
Confidence 124788888899999999 776655332 0 1345566777888897432 332
Q ss_pred CHH-HHHHHHHcCCCcEEEechHHh
Q 025135 183 TRE-LGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 183 t~~-~a~~~l~~g~~D~V~igR~~i 206 (257)
++. ..+++-+-| +..|.+|-.++
T Consensus 215 ~p~~s~~~L~~lG-v~~v~~~~~~~ 238 (292)
T PRK11320 215 TPLFTTEELASAG-VAMVLYPLSAF 238 (292)
T ss_pred CCCCCHHHHHHcC-CcEEEEChHHH
Confidence 322 344444445 99999995554
No 343
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=94.61 E-value=1.3 Score=40.74 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=34.0
Q ss_pred EEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 176 FICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 176 vi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
+|.-+|| |++++..+.+.| +|.|.+|-.++..||.-..++
T Consensus 291 ~VsESGI~t~~Dv~~l~~~G-adAvLVGEsLMr~~dp~~~l~ 331 (338)
T PLN02460 291 VVGESGLFTPDDVAYVQNAG-VKAVLVGESLVKQDDPGKGIA 331 (338)
T ss_pred EEECCCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHH
Confidence 4555788 999999999887 999999999999998766554
No 344
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=94.57 E-value=0.42 Score=41.88 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=69.1
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcC----CCCCC----chhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRT----DEYGG----SIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~----D~yGG----s~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
+.|.++|+|+|..+. |-...++++....+. ..|++ ++-++..|..|-.+.+.+.+...-|.+=.+++
T Consensus 3 ~~A~~aGaDaVKFQ~---~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpf-- 77 (241)
T PF03102_consen 3 DAAAEAGADAVKFQT---FTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPF-- 77 (241)
T ss_dssp HHHHHHT-SEEEEEE---B-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE---
T ss_pred HHHHHhCCCEEEEEE---EchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCC--
Confidence 346789999999864 456677777543221 12333 24456677777777777776433233333443
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF- 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i- 182 (257)
+. .. +..|++.| +.++-+.... -.+..+++.+.+ .+.|||++-|.
T Consensus 78 --------d~-~s---~d~l~~~~------~~~~KIaS~d---------------l~n~~lL~~~A~-tgkPvIlSTG~s 123 (241)
T PF03102_consen 78 --------DE-ES---VDFLEELG------VPAYKIASGD---------------LTNLPLLEYIAK-TGKPVILSTGMS 123 (241)
T ss_dssp --------SH-HH---HHHHHHHT-------SEEEE-GGG---------------TT-HHHHHHHHT-T-S-EEEE-TT-
T ss_pred --------CH-HH---HHHHHHcC------CCEEEecccc---------------ccCHHHHHHHHH-hCCcEEEECCCC
Confidence 12 22 33456667 7777775431 123456666654 68898888776
Q ss_pred CHHH---HHHHH-HcCCCcEEEechHHhhCchHH
Q 025135 183 TREL---GIQAL-AEDGADLVAYGRLFISNPDLV 212 (257)
Q Consensus 183 t~~~---a~~~l-~~g~~D~V~igR~~iadP~l~ 212 (257)
|.++ |.+.+ +.|..+++.+ --.-..|--+
T Consensus 124 tl~EI~~Av~~~~~~~~~~l~ll-HC~s~YP~~~ 156 (241)
T PF03102_consen 124 TLEEIERAVEVLREAGNEDLVLL-HCVSSYPTPP 156 (241)
T ss_dssp -HHHHHHHHHHHHHHCT--EEEE-EE-SSSS--G
T ss_pred CHHHHHHHHHHHHhcCCCCEEEE-ecCCCCCCCh
Confidence 7554 55666 5565555544 3333444433
No 345
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=94.56 E-value=0.29 Score=41.86 Aligned_cols=81 Identities=11% Similarity=0.135 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCc-EEEeCCC-CHHHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGT-FICSGGF-TRELGIQ 189 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~G~i-t~~~a~~ 189 (257)
+.+++..+++.+.+.| +..++++... +...+.++.+++.++.+ +|+.|.+ +.++++.
T Consensus 20 ~~~~~~~~~~a~~~gG------i~~iEvt~~~---------------~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~ 78 (206)
T PRK09140 20 TPDEALAHVGALIEAG------FRAIEIPLNS---------------PDPFDSIAALVKALGDRALIGAGTVLSPEQVDR 78 (206)
T ss_pred CHHHHHHHHHHHHHCC------CCEEEEeCCC---------------ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHH
Confidence 4788999999999999 8888876421 12234677788888765 7788888 9999999
Q ss_pred HHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 190 ALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 190 ~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
+++.| +|++..+- .|+++.+..+.
T Consensus 79 a~~aG-A~fivsp~---~~~~v~~~~~~ 102 (206)
T PRK09140 79 LADAG-GRLIVTPN---TDPEVIRRAVA 102 (206)
T ss_pred HHHcC-CCEEECCC---CCHHHHHHHHH
Confidence 99998 99999863 57777776653
No 346
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.54 E-value=0.38 Score=44.49 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC-CHHHHHHHHHcC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF-TRELGIQALAED 194 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i-t~~~a~~~l~~g 194 (257)
.+.++.|.++| +|+|.+....- ........++.+|+.++ +|||+ |++ |.+.++.+++.|
T Consensus 110 ~er~~~L~~ag------vD~ivID~a~g------------~s~~~~~~ik~ik~~~~~~~via-GNV~T~e~a~~L~~aG 170 (352)
T PF00478_consen 110 FERAEALVEAG------VDVIVIDSAHG------------HSEHVIDMIKKIKKKFPDVPVIA-GNVVTYEGAKDLIDAG 170 (352)
T ss_dssp HHHHHHHHHTT-------SEEEEE-SST------------TSHHHHHHHHHHHHHSTTSEEEE-EEE-SHHHHHHHHHTT
T ss_pred HHHHHHHHHcC------CCEEEccccCc------------cHHHHHHHHHHHHHhCCCceEEe-cccCCHHHHHHHHHcC
Confidence 55677888899 78776643211 12234567788999987 67775 666 999999999998
Q ss_pred CCcEEEec
Q 025135 195 GADLVAYG 202 (257)
Q Consensus 195 ~~D~V~ig 202 (257)
+|.|-+|
T Consensus 171 -ad~vkVG 177 (352)
T PF00478_consen 171 -ADAVKVG 177 (352)
T ss_dssp --SEEEES
T ss_pred -CCEEEEe
Confidence 9988666
No 347
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=94.51 E-value=0.75 Score=42.21 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=73.5
Q ss_pred HHHHcCCCEEEecccccchhhhcCCCCcCCc----CCCCCC-c---hhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCC
Q 025135 33 NAIQAGFDGIEIHGAHGYLIDQFLKDGINDR----TDEYGG-S---IENRCRFLMQLVREVIVAIGADRVGVRMSPAIDH 104 (257)
Q Consensus 33 ~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R----~D~yGG-s---~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~ 104 (257)
.|++||+|+|.++. |-...+.++..+.+ .+.|.| + +-+++.|..|-.+.+.+.+...-|.+=-+++
T Consensus 24 ~A~~aGadaVKfQt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpf--- 97 (329)
T TIGR03569 24 AAAEAGADAVKFQT---FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFLSTPF--- 97 (329)
T ss_pred HHHHhCCCEEEeee---CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEEEEeC---
Confidence 34679999999985 78888888776541 224544 2 3345666666677777666432122212232
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T 183 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t 183 (257)
+. .-++.|++.| ++++-+..+.. .+..+++.+.+ .+.|||.+-|. |
T Consensus 98 -------d~----~svd~l~~~~------v~~~KIaS~~~---------------~n~pLL~~~A~-~gkPvilStGmat 144 (329)
T TIGR03569 98 -------DL----ESADFLEDLG------VPRFKIPSGEI---------------TNAPLLKKIAR-FGKPVILSTGMAT 144 (329)
T ss_pred -------CH----HHHHHHHhcC------CCEEEECcccc---------------cCHHHHHHHHh-cCCcEEEECCCCC
Confidence 11 1234566778 77777754321 22345565554 57899888777 7
Q ss_pred HHH---HHHHHHcCCCc
Q 025135 184 REL---GIQALAEDGAD 197 (257)
Q Consensus 184 ~~~---a~~~l~~g~~D 197 (257)
.++ |.+.+.+.+++
T Consensus 145 l~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 145 LEEIEAAVGVLRDAGTP 161 (329)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 654 45556654453
No 348
>TIGR03586 PseI pseudaminic acid synthase.
Probab=94.50 E-value=1.3 Score=40.64 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=72.4
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCC----cCCCCCC-c---hhhHhhHHHHHHHHHHHHhCCCeEEEEEccCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGIND----RTDEYGG-S---IENRCRFLMQLVREVIVAIGADRVGVRMSPAI 102 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~----R~D~yGG-s---~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~ 102 (257)
++.|++||+|+|..+. |-...+.++..++ +...|.+ + +-++..+..|..+.+.+.+...-|.+=-+++
T Consensus 23 I~~A~~aGAdavKFQ~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~stpf- 98 (327)
T TIGR03586 23 IEAAKAAGADAIKLQT---YTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIFSSPF- 98 (327)
T ss_pred HHHHHHhCCCEEEeee---ccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEEEccC-
Confidence 3456789999999875 6777777666533 2335544 2 2234455566656665544321111111222
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
+.+ -+..|.+.| ++++.+..+.. .+..+++.+.+ .+.|||.+-|.
T Consensus 99 ---------d~~----svd~l~~~~------v~~~KI~S~~~---------------~n~~LL~~va~-~gkPvilstG~ 143 (327)
T TIGR03586 99 ---------DET----AVDFLESLD------VPAYKIASFEI---------------TDLPLIRYVAK-TGKPIIMSTGI 143 (327)
T ss_pred ---------CHH----HHHHHHHcC------CCEEEECCccc---------------cCHHHHHHHHh-cCCcEEEECCC
Confidence 121 234566777 77777754321 22345565554 58898888776
Q ss_pred -CHHH---HHHHHHcCCC-cEEE
Q 025135 183 -TREL---GIQALAEDGA-DLVA 200 (257)
Q Consensus 183 -t~~~---a~~~l~~g~~-D~V~ 200 (257)
|.++ |.+.|.+.+. +++.
T Consensus 144 ~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 144 ATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred CCHHHHHHHHHHHHHCCCCcEEE
Confidence 7554 5556655445 5554
No 349
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.48 E-value=0.28 Score=46.35 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=36.7
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCc-----hHHHHHH
Q 025135 173 QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNP-----DLVLRFK 216 (257)
Q Consensus 173 ~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP-----~l~~k~~ 216 (257)
++||++.||| |++.+..++.-| +|+|.+|..|++=+ +..+++.
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alG-Ad~V~~GT~flat~Ea~~s~~~K~~L 267 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALG-ADFIVTGSINQCTVEAGTSDAVKDLL 267 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcC-CcEEeeccHHHhCccccCCHHHHHHH
Confidence 5899999999 999999999998 99999999999743 4455544
No 350
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=94.47 E-value=0.25 Score=47.01 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=36.5
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCc-----hHHHHHH
Q 025135 173 QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNP-----DLVLRFK 216 (257)
Q Consensus 173 ~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP-----~l~~k~~ 216 (257)
++||++.||| |++.+..++.-| +|+|.+|.-|++=+ +..++..
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLG-AdgV~~GT~flat~Esgas~~~K~~L 272 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLG-ADFIVTGSVNQCTVEAGTSDNVKKLL 272 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcC-CcEEEeccHHHhCccccCCHHHHHHH
Confidence 6889999999 999999999998 99999999999743 4455544
No 351
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=94.45 E-value=0.46 Score=42.41 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
++.|+.|.+||.=+|-.- ... |.- -|. -||- -|+. -.+.|++||++|.- ||.-++... |
T Consensus 18 ~~qa~~ae~aga~~v~~~-------~~~--~~~-~~~--~~~v--~R~~-~~~~I~~Ik~~V~i-PVIGi~K~~--~--- 76 (283)
T cd04727 18 AEQARIAEEAGAVAVMAL-------ERV--PAD-IRA--AGGV--ARMA-DPKMIKEIMDAVSI-PVMAKVRIG--H--- 76 (283)
T ss_pred HHHHHHHHHcCceEEeee-------ccC--chh-hhh--cCCe--eecC-CHHHHHHHHHhCCC-CeEEeeehh--H---
Confidence 467889999998777531 111 111 121 1331 1221 34668899999843 654444321 1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHH
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TREL 186 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~ 186 (257)
..=++.|.++| +|+|+.+.. ..+ ..++...+|+.++.|+++ +. |.++
T Consensus 77 ---------~~Ea~~L~eaG------vDiIDaT~r--------------~rP-~~~~~~~iK~~~~~l~MA--D~stleE 124 (283)
T cd04727 77 ---------FVEAQILEALG------VDMIDESEV--------------LTP-ADEEHHIDKHKFKVPFVC--GARNLGE 124 (283)
T ss_pred ---------HHHHHHHHHcC------CCEEeccCC--------------CCc-HHHHHHHHHHHcCCcEEc--cCCCHHH
Confidence 33467889999 899974431 112 245677788888777775 56 8999
Q ss_pred HHHHHHcCCCcEEEec
Q 025135 187 GIQALAEDGADLVAYG 202 (257)
Q Consensus 187 a~~~l~~g~~D~V~ig 202 (257)
|..+++.| +|+|+--
T Consensus 125 al~a~~~G-ad~I~TT 139 (283)
T cd04727 125 ALRRISEG-AAMIRTK 139 (283)
T ss_pred HHHHHHCC-CCEEEec
Confidence 99999998 9999765
No 352
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.44 E-value=3.6 Score=37.13 Aligned_cols=160 Identities=11% Similarity=0.094 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
+-+|+.+.++||++|-+.+.. .+-. +--..|. |- .. +.-.++.++.|..++. -||.+.+- .+|-
T Consensus 26 a~SArl~e~aGf~ai~~sg~~---~~as----~lG~pD~--g~-l~-~~e~~~~~~~I~~~~~-lPv~aD~d--tGyG-- 89 (294)
T TIGR02319 26 ALSAKVIQQAGFPAVHMTGSG---TSAS----MLGLPDL--GF-TS-VSEQAINAKNIVLAVD-VPVIMDAD--AGYG-- 89 (294)
T ss_pred HHHHHHHHHcCCCEEEecHHH---HHHH----HcCCCCc--CC-CC-HHHHHHHHHHHHhccC-CCEEEECC--CCCC--
Confidence 457888999999999864322 1100 0011221 11 11 1234555666666653 27877664 2332
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCccc-CCCcCCCCCCCchhHHHHHHHHHHHh---C-CcEEEeCCC
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTA-YGQTESGRPGTEDEEAQLLRTWRRSY---Q-GTFICSGGF 182 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ir~~~---~-~pvi~~G~i 182 (257)
++.. ..+.++.++++| +.-|++....+.. .+. ..+.. --...+++.+|+.+. . .+++.+.+.
T Consensus 90 ---~~~~-v~r~V~~~~~aG------aagi~IEDq~~pK~cg~-~~~k~--lv~~ee~~~kI~Aa~~A~~~~d~~I~ART 156 (294)
T TIGR02319 90 ---NAMS-VWRATREFERVG------IVGYHLEDQVNPKRCGH-LEGKR--LISTEEMTGKIEAAVEAREDEDFTIIART 156 (294)
T ss_pred ---CcHH-HHHHHHHHHHcC------CeEEEEECCCCccccCC-CCCcc--ccCHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 3444 567899999999 8889886532210 110 00000 011234455554443 2 234444332
Q ss_pred ------C----HHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 183 ------T----RELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 183 ------t----~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
. .+-+....+.| +|.|.+- .+.+++.++++.+..
T Consensus 157 Da~~~~g~deaI~Ra~aY~eAG-AD~ifi~--~~~~~~ei~~~~~~~ 200 (294)
T TIGR02319 157 DARESFGLDEAIRRSREYVAAG-ADCIFLE--AMLDVEEMKRVRDEI 200 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhC-CCEEEec--CCCCHHHHHHHHHhc
Confidence 1 23355666776 9999994 478999999888754
No 353
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=94.39 E-value=0.61 Score=38.61 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=43.5
Q ss_pred HHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 025135 120 IQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADL 198 (257)
Q Consensus 120 ~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~ 198 (257)
.+.+++.+ .|++++-.+ -....++++.+..++|||++|-+ |.|++.++|..| +-.
T Consensus 114 ~~~i~~~~------pD~iEvLPG-----------------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aG-A~a 169 (181)
T COG1954 114 IKQIEKSE------PDFIEVLPG-----------------VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAG-AVA 169 (181)
T ss_pred HHHHHHcC------CCEEEEcCc-----------------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhC-cEE
Confidence 34455666 889987432 12467788999999999998888 999999999998 555
Q ss_pred EE
Q 025135 199 VA 200 (257)
Q Consensus 199 V~ 200 (257)
|+
T Consensus 170 vS 171 (181)
T COG1954 170 VS 171 (181)
T ss_pred Ee
Confidence 55
No 354
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=94.36 E-value=0.92 Score=37.99 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeE--EEEEccCCC
Q 025135 26 QYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRV--GVRMSPAID 103 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v--~vrls~~~~ 103 (257)
.|.++++.+.++|.|.|++-...|- |. .+..+..++++.+|+.+ +.++ .+.++
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~~----~~----------------~~~~~~~~~~~~i~~~~-~~~~~v~l~~~---- 67 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDGH----FV----------------PNLTFGPPVVKALRKHT-DLPLDVHLMVE---- 67 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCC----CC----------------CccccCHHHHHHHHhhC-CCcEEEEeeeC----
Confidence 4667788889999999998543321 10 11224457888899877 3343 34443
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ 141 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~ 141 (257)
++ .++++.+.+.| +|.+++|.
T Consensus 68 -------d~----~~~~~~~~~~g------~dgv~vh~ 88 (211)
T cd00429 68 -------NP----ERYIEAFAKAG------ADIITFHA 88 (211)
T ss_pred -------CH----HHHHHHHHHcC------CCEEEECc
Confidence 12 23456666889 89988775
No 355
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=94.35 E-value=2 Score=42.62 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=80.1
Q ss_pred HHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-e--EEEEEccCCCCCCCCC
Q 025135 33 NAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-R--VGVRMSPAIDHLDATD 109 (257)
Q Consensus 33 ~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~--v~vrls~~~~~~~~~~ 109 (257)
.|.++|.|.|-|..+. |..+.+...++.+|+. |.. . |.+-.++.
T Consensus 105 ~a~~~Gid~~rifd~l------------------------nd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~-------- 151 (593)
T PRK14040 105 RAVKNGMDVFRVFDAM------------------------NDPRNLETALKAVRKV-GAHAQGTLSYTTSPV-------- 151 (593)
T ss_pred HHHhcCCCEEEEeeeC------------------------CcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCc--------
Confidence 4568899998886543 1234567778888774 432 1 33333331
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCC----HH
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT----RE 185 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it----~~ 185 (257)
.+.+...++++.++++| ++.|.+.... + ...+......++.+|+.+++||-.=..-| ..
T Consensus 152 -~~~~~~~~~a~~l~~~G------ad~i~i~Dt~----G------~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~A 214 (593)
T PRK14040 152 -HTLQTWVDLAKQLEDMG------VDSLCIKDMA----G------LLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTA 214 (593)
T ss_pred -cCHHHHHHHHHHHHHcC------CCEEEECCCC----C------CcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHH
Confidence 35788899999999999 7888765421 0 11233345677888988888864322213 45
Q ss_pred HHHHHHHcCCCcEE-----EechHHhhCchHH
Q 025135 186 LGIQALAEDGADLV-----AYGRLFISNPDLV 212 (257)
Q Consensus 186 ~a~~~l~~g~~D~V-----~igR~~iadP~l~ 212 (257)
....+++.| ||.| +||++ ..||.+-
T Consensus 215 n~laAieAG-a~~vD~ai~glG~~-~Gn~~le 244 (593)
T PRK14040 215 TLLKAIEAG-IDGVDTAISSMSMT-YGHSATE 244 (593)
T ss_pred HHHHHHHcC-CCEEEecccccccc-ccchhHH
Confidence 667889988 8776 45554 3677653
No 356
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.30 E-value=3.2 Score=37.42 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
+-.|+.+.++||++|-+.+.. ++. .+.--.|. |- .. +.-+++.++.|.+++.- ||.+.+- .+|-
T Consensus 27 a~SAri~e~~Gf~ai~~Sg~~---~a~----~~lG~PD~--g~-l~-~~e~~~~~~~I~~~~~i-PviaD~d--~GyG-- 90 (292)
T PRK11320 27 AYHALLAERAGFKAIYLSGGG---VAA----ASLGLPDL--GI-TT-LDDVLIDVRRITDACDL-PLLVDID--TGFG-- 90 (292)
T ss_pred HHHHHHHHHcCCCEEEeCHHH---HHh----HhcCCCCC--CC-CC-HHHHHHHHHHHHhccCC-CEEEECC--CCCC--
Confidence 456888899999999875432 110 01111221 11 11 22345556666666543 7877654 2331
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc-cCCCcCCCCCCCchhHHHHHHHHHHHh----CCcEEEeCCC
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT-AYGQTESGRPGTEDEEAQLLRTWRRSY----QGTFICSGGF 182 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ir~~~----~~pvi~~G~i 182 (257)
......+.++.++++| +.-||+....+. ..+. ..+.. . -...+++.+|+.+. +.+++.+.+.
T Consensus 91 ----~~~~v~r~V~~~~~aG------aagi~IEDq~~pK~cg~-~~~~~-l-v~~ee~~~kI~Aa~~a~~~~d~~IiART 157 (292)
T PRK11320 91 ----GAFNIARTVKSMIKAG------AAAVHIEDQVGAKRCGH-RPNKE-I-VSQEEMVDRIKAAVDARTDPDFVIMART 157 (292)
T ss_pred ----CHHHHHHHHHHHHHcC------CeEEEEecCCCccccCC-CCCCc-c-cCHHHHHHHHHHHHHhccCCCeEEEEec
Confidence 2456678899999999 888988653221 0110 00000 0 11224445554443 2345544442
Q ss_pred C------H----HHHHHHHHcCCCcEEEechHHhhCchHHHHHHcC
Q 025135 183 T------R----ELGIQALAEDGADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 183 t------~----~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g 218 (257)
+ . +-++...+.| +|+|.+- .+.+++..+++.+.
T Consensus 158 Da~~~~g~deAI~Ra~aY~eAG-AD~ifi~--~~~~~~~i~~~~~~ 200 (292)
T PRK11320 158 DALAVEGLDAAIERAQAYVEAG-ADMIFPE--AMTELEMYRRFADA 200 (292)
T ss_pred CcccccCHHHHHHHHHHHHHcC-CCEEEec--CCCCHHHHHHHHHh
Confidence 1 2 3355666666 9999984 36788888888764
No 357
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=94.29 E-value=0.91 Score=40.02 Aligned_cols=77 Identities=16% Similarity=0.026 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHH
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALA 192 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~ 192 (257)
.+..++-++.|+++| +..+.+.. - ..+.++.|-+.+++|+|+-|-=.--|.+-++
T Consensus 160 a~~l~~dA~ale~AG------af~ivlE~----------------V--p~~lA~~IT~~lsiPtIGIGAG~~cDGQvLV- 214 (268)
T COG0413 160 AEKLLEDAKALEEAG------AFALVLEC----------------V--PAELAKEITEKLSIPTIGIGAGPGCDGQVLV- 214 (268)
T ss_pred HHHHHHHHHHHHhcC------ceEEEEec----------------c--HHHHHHHHHhcCCCCEEeecCCCCCCceEEE-
Confidence 344555688999999 55554421 0 1356778999999999887642111222122
Q ss_pred cCCCcEEEechHHhhCchHHHHHHcC
Q 025135 193 EDGADLVAYGRLFISNPDLVLRFKLN 218 (257)
Q Consensus 193 ~g~~D~V~igR~~iadP~l~~k~~~g 218 (257)
.=|++++-+ =.-|-|+++..+-
T Consensus 215 --~~D~lGl~~--~~~PkFvK~y~~l 236 (268)
T COG0413 215 --MHDMLGLSG--GHKPKFVKRYADL 236 (268)
T ss_pred --eeeccccCC--CCCCcHHHHHhcc
Confidence 135566633 2458888887743
No 358
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.24 E-value=0.57 Score=39.25 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQA 190 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~ 190 (257)
+.++...+++.|.+.| +..+.+... .+.....++.+++.++...++.|.+ +.++++.+
T Consensus 14 ~~~~~~~~~~~l~~~G------~~~vev~~~---------------~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a 72 (190)
T cd00452 14 DAEDALALAEALIEGG------IRAIEITLR---------------TPGALEAIRALRKEFPEALIGAGTVLTPEQADAA 72 (190)
T ss_pred CHHHHHHHHHHHHHCC------CCEEEEeCC---------------ChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHH
Confidence 4677889999999999 888887642 1123456778888876556677777 89999999
Q ss_pred HHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 191 LAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 191 l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
++.| +|+|..+- .+|++.+..+.
T Consensus 73 ~~~G-a~~i~~p~---~~~~~~~~~~~ 95 (190)
T cd00452 73 IAAG-AQFIVSPG---LDPEVVKAANR 95 (190)
T ss_pred HHcC-CCEEEcCC---CCHHHHHHHHH
Confidence 9998 99998763 47788777665
No 359
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.24 E-value=0.59 Score=42.89 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 025135 161 EAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLV 199 (257)
Q Consensus 161 ~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V 199 (257)
....++.||+.++...|..|++ |++.++++++.| +|.|
T Consensus 138 ~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aG-AD~v 176 (346)
T PRK05096 138 FVQFVAKAREAWPDKTICAGNVVTGEMVEELILSG-ADIV 176 (346)
T ss_pred HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcC-CCEE
Confidence 4567888999885434445777 999999999998 9986
No 360
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.22 E-value=0.8 Score=41.22 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=56.8
Q ss_pred CeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHH
Q 025135 92 DRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRS 171 (257)
Q Consensus 92 ~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 171 (257)
.++++.+-.. .+.+...++++.+++.| ++.|.++-.... .+ .. ..+..++.+++.
T Consensus 116 ~~~~~ql~~~---------~~~~~~~~~i~~~~~~g------~~~i~l~~~~p~-~~--------~~-~~~~~i~~l~~~ 170 (299)
T cd02809 116 GPRWFQLYVP---------RDREITEDLLRRAEAAG------YKALVLTVDTPV-LG--------RR-LTWDDLAWLRSQ 170 (299)
T ss_pred CCeEEEEeec---------CCHHHHHHHHHHHHHcC------CCEEEEecCCCC-CC--------CC-CCHHHHHHHHHh
Confidence 3667766431 12455666788888888 777766532111 01 01 234677889999
Q ss_pred hCCcEEEeCCCCHHHHHHHHHcCCCcEEEe
Q 025135 172 YQGTFICSGGFTRELGIQALAEDGADLVAY 201 (257)
Q Consensus 172 ~~~pvi~~G~it~~~a~~~l~~g~~D~V~i 201 (257)
+++||++-+-.++++|..+++.| +|+|.+
T Consensus 171 ~~~pvivK~v~s~~~a~~a~~~G-~d~I~v 199 (299)
T cd02809 171 WKGPLILKGILTPEDALRAVDAG-ADGIVV 199 (299)
T ss_pred cCCCEEEeecCCHHHHHHHHHCC-CCEEEE
Confidence 99999887666999999998887 999877
No 361
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.19 E-value=1.6 Score=41.95 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccC
Q 025135 22 EVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPA 101 (257)
Q Consensus 22 ~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~ 101 (257)
.+++.|++ +|.++|.|.|.|-.+. | ..+.+...++.+|+. |. .+..=++-.
T Consensus 95 Dvv~~fv~---~A~~~Gvd~irif~~l------------n------------d~~n~~~~i~~ak~~-G~-~v~~~i~~t 145 (467)
T PRK14041 95 DVVELFVK---KVAEYGLDIIRIFDAL------------N------------DIRNLEKSIEVAKKH-GA-HVQGAISYT 145 (467)
T ss_pred hhhHHHHH---HHHHCCcCEEEEEEeC------------C------------HHHHHHHHHHHHHHC-CC-EEEEEEEec
Confidence 44455554 4568899998886554 1 123455566666654 43 222222210
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG 181 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~ 181 (257)
+. ...+.+...++++.+.++| ++.|.+.... + ...+......++.+|+.+++||-.=..
T Consensus 146 --~~---p~~t~e~~~~~a~~l~~~G------ad~I~i~Dt~----G------~l~P~~v~~Lv~~lk~~~~vpI~~H~H 204 (467)
T PRK14041 146 --VS---PVHTLEYYLEFARELVDMG------VDSICIKDMA----G------LLTPKRAYELVKALKKKFGVPVEVHSH 204 (467)
T ss_pred --cC---CCCCHHHHHHHHHHHHHcC------CCEEEECCcc----C------CcCHHHHHHHHHHHHHhcCCceEEEec
Confidence 11 1245788899999999999 7777765421 0 112334456778899988887643222
Q ss_pred ----CCHHHHHHHHHcCCCcEEE-----echHHhhCchH
Q 025135 182 ----FTRELGIQALAEDGADLVA-----YGRLFISNPDL 211 (257)
Q Consensus 182 ----it~~~a~~~l~~g~~D~V~-----igR~~iadP~l 211 (257)
+....+.++++.| ||.|- ||++. .||.+
T Consensus 205 nt~GlA~AN~laAieaG-ad~vD~sv~~~g~ga-gN~at 241 (467)
T PRK14041 205 CTTGLASLAYLAAVEAG-ADMFDTAISPFSMGT-SQPPF 241 (467)
T ss_pred CCCCcHHHHHHHHHHhC-CCEEEeeccccCCCC-CChhH
Confidence 2256677889988 87764 55543 47754
No 362
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.16 E-value=3.6 Score=35.96 Aligned_cols=161 Identities=17% Similarity=0.096 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDAT 108 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~ 108 (257)
-.|+.+.++|||+|-+-+.. .+-.+ . ..|.---++ .-..+.++.|...+.. ||.+.+.. +|.
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~---~~~s~-G----~pD~~~~~~----~e~~~~~~~I~~~~~~-Pv~~D~~~--G~g--- 81 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAG---VAASL-G----LPDGGLLTL----DEVLAAVRRIARAVDL-PVIADADT--GYG--- 81 (243)
T ss_pred HHHHHHHHcCCCEEEeccHH---HHHhc-C----CCCCCcCCH----HHHHHHHHHHHhhccC-CEEEEcCC--CCC---
Confidence 46788889999999975432 22111 1 111101112 2344555555555532 66665542 221
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCC-CCchhHHHHHHHHHHHhCC----cEEEe----
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRP-GTEDEEAQLLRTWRRSYQG----TFICS---- 179 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ir~~~~~----pvi~~---- 179 (257)
..+...+.++.+.+.| ++.+++....+....-...+.. .+.......++.++++... +|++-
T Consensus 82 ---~~~~~~~~v~~~~~~G------~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~ 152 (243)
T cd00377 82 ---NALNVARTVRELEEAG------AAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDAL 152 (243)
T ss_pred ---CHHHHHHHHHHHHHcC------CEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCch
Confidence 2466778899999999 8888885543221100000000 0112223334444554433 34443
Q ss_pred ----CCC--CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 180 ----GGF--TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 180 ----G~i--t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
.++ ..+-++.+.+.| +|.|.+--+. +++.++++.+..
T Consensus 153 ~~~~~~~~eai~Ra~ay~~AG-AD~v~v~~~~--~~~~~~~~~~~~ 195 (243)
T cd00377 153 LAGEEGLDEAIERAKAYAEAG-ADGIFVEGLK--DPEEIRAFAEAP 195 (243)
T ss_pred hccCCCHHHHHHHHHHHHHcC-CCEEEeCCCC--CHHHHHHHHhcC
Confidence 223 244566777777 9999985443 889898888753
No 363
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.15 E-value=4 Score=36.36 Aligned_cols=120 Identities=12% Similarity=0.104 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCC
Q 025135 27 YRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLD 106 (257)
Q Consensus 27 f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~ 106 (257)
+.+-+.+..+.|.|||-+.+.-| +|. -=|.+.|.+++..+++ +++. |.+=++.
T Consensus 22 ~~~li~~l~~~Gv~Gl~~~GstG----E~~-----------~Lt~eEr~~l~~~~~~----~~~~--vi~gvg~------ 74 (279)
T cd00953 22 FKKHCENLISKGIDYVFVAGTTG----LGP-----------SLSFQEKLELLKAYSD----ITDK--VIFQVGS------ 74 (279)
T ss_pred HHHHHHHHHHcCCcEEEEcccCC----Ccc-----------cCCHHHHHHHHHHHHH----HcCC--EEEEeCc------
Confidence 33444455679999999877653 221 1134667666555544 4443 3222221
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEE------eC
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFIC------SG 180 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~------~G 180 (257)
.+.++++++++..++.| +|.+-+..|.|.... .........+.|.+ ++||+. +|
T Consensus 75 ----~~~~~ai~~a~~a~~~G------ad~v~v~~P~y~~~~--------~~~~i~~yf~~v~~--~lpv~iYn~P~~tg 134 (279)
T cd00953 75 ----LNLEESIELARAAKSFG------IYAIASLPPYYFPGI--------PEEWLIKYFTDISS--PYPTFIYNYPKATG 134 (279)
T ss_pred ----CCHHHHHHHHHHHHHcC------CCEEEEeCCcCCCCC--------CHHHHHHHHHHHHh--cCCEEEEeCccccC
Confidence 34788999999999999 888887777553210 11222234455666 788653 33
Q ss_pred C-CCHHHHHHHHHc
Q 025135 181 G-FTRELGIQALAE 193 (257)
Q Consensus 181 ~-it~~~a~~~l~~ 193 (257)
- ++++...++.++
T Consensus 135 ~~l~~~~l~~L~~~ 148 (279)
T cd00953 135 YDINARMAKEIKKA 148 (279)
T ss_pred CCCCHHHHHHHHhc
Confidence 2 478888888754
No 364
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.13 E-value=4.2 Score=36.58 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
+-.|+.+.++||++|-+.+.. ++- +---.|.=--+++ -.++.++.|..++.- ||.+.+- .+|
T Consensus 23 a~SAri~e~aGf~Ai~~sg~~---~a~-----~lG~pD~g~lt~~----e~~~~~~~I~~~~~i-PviaD~d--~Gy--- 84 (285)
T TIGR02317 23 AMAALLAERAGFEAIYLSGAA---VAA-----SLGLPDLGITTLD----EVAEDARRITRVTDL-PLLVDAD--TGF--- 84 (285)
T ss_pred HHHHHHHHHcCCCEEEEcHHH---HHH-----hCCCCCCCCCCHH----HHHHHHHHHHhccCC-CEEEECC--CCC---
Confidence 457888899999999975432 221 0011231001222 334455555555543 7777653 233
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc-cCCCcCCCCCCCchhHHHHHHHHHHHh---C-CcEEEeCCC
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT-AYGQTESGRPGTEDEEAQLLRTWRRSY---Q-GTFICSGGF 182 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ir~~~---~-~pvi~~G~i 182 (257)
++ .....+.++.++++| +.-||+....+. ..+. ..+.. . -...+++.+|+.+. . .+++.+.+.
T Consensus 85 --G~-~~~v~~tv~~~~~aG------~agi~IEDq~~pK~cgh-~~g~~-l-v~~ee~~~kI~Aa~~a~~~~d~~IiART 152 (285)
T TIGR02317 85 --GE-AFNVARTVREMEDAG------AAAVHIEDQVLPKRCGH-LPGKE-L-VSREEMVDKIAAAVDAKRDEDFVIIART 152 (285)
T ss_pred --CC-HHHHHHHHHHHHHcC------CeEEEEecCCCccccCC-CCCcc-c-cCHHHHHHHHHHHHHhccCCCEEEEEEc
Confidence 23 455677899999999 888998653321 0110 00100 0 11224444444432 2 345554443
Q ss_pred C------HH----HHHHHHHcCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 183 T------RE----LGIQALAEDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 183 t------~~----~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
+ .+ -++...+.| +|+|.+- .+.+++.++++.+..
T Consensus 153 Da~~~~g~deAI~Ra~ay~~AG-AD~vfi~--g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 153 DARAVEGLDAAIERAKAYVEAG-ADMIFPE--ALTSLEEFRQFAKAV 196 (285)
T ss_pred CcccccCHHHHHHHHHHHHHcC-CCEEEeC--CCCCHHHHHHHHHhc
Confidence 1 23 345566666 9999983 467888888887654
No 365
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.01 E-value=1.6 Score=38.68 Aligned_cols=134 Identities=21% Similarity=0.216 Sum_probs=76.6
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATD 109 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~ 109 (257)
..++|.++|.|.|.|..+- |+..|+ ..+|-+.+.-...+.++++..|+. | +-++++....+.
T Consensus 76 di~~a~~~g~~~i~i~~~~--------S~~~~~--~~~~~~~~e~~~~~~~~i~~a~~~-G---~~v~~~~eda~r---- 137 (262)
T cd07948 76 DARIAVETGVDGVDLVFGT--------SPFLRE--ASHGKSITEIIESAVEVIEFVKSK-G---IEVRFSSEDSFR---- 137 (262)
T ss_pred HHHHHHHcCcCEEEEEEec--------CHHHHH--HHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEEEEeeCC----
Confidence 3567788999998886543 122111 123444444455555666665553 2 334444422121
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C----H
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T----R 184 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t----~ 184 (257)
.+.+...++++.+.+.| ++-+.+.... + ...+......++.+++.+++|+-. ... | .
T Consensus 138 -~~~~~l~~~~~~~~~~g------~~~i~l~Dt~----G------~~~P~~v~~~~~~~~~~~~~~i~~-H~Hn~~Gla~ 199 (262)
T cd07948 138 -SDLVDLLRVYRAVDKLG------VNRVGIADTV----G------IATPRQVYELVRTLRGVVSCDIEF-HGHNDTGCAI 199 (262)
T ss_pred -CCHHHHHHHHHHHHHcC------CCEEEECCcC----C------CCCHHHHHHHHHHHHHhcCCeEEE-EECCCCChHH
Confidence 34677788999999999 6666654321 1 112333445677888888766533 222 2 4
Q ss_pred HHHHHHHHcCCCcEEE
Q 025135 185 ELGIQALAEDGADLVA 200 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~ 200 (257)
..+..+++.| +|.|-
T Consensus 200 an~~~a~~aG-~~~vd 214 (262)
T cd07948 200 ANAYAALEAG-ATHID 214 (262)
T ss_pred HHHHHHHHhC-CCEEE
Confidence 5667888888 76653
No 366
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.01 E-value=0.28 Score=47.50 Aligned_cols=69 Identities=17% Similarity=0.111 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCc-EEEeCCC-CHHHHHHHH
Q 025135 114 GLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGT-FICSGGF-TRELGIQAL 191 (257)
Q Consensus 114 ~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~G~i-t~~~a~~~l 191 (257)
.++.+.++.|.++| +|++.+.... + ........++++|+.++.+ .|..|.+ |+++++.++
T Consensus 241 ~~~~~ra~~Lv~aG------vd~i~vd~a~----g--------~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li 302 (502)
T PRK07107 241 RDYAERVPALVEAG------ADVLCIDSSE----G--------YSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLA 302 (502)
T ss_pred hhHHHHHHHHHHhC------CCeEeecCcc----c--------ccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHH
Confidence 35677889999999 8888764211 0 1112346778899988754 4566777 999999999
Q ss_pred HcCCCcEEEe
Q 025135 192 AEDGADLVAY 201 (257)
Q Consensus 192 ~~g~~D~V~i 201 (257)
+.| +|+|-+
T Consensus 303 ~aG-Ad~I~v 311 (502)
T PRK07107 303 EAG-ADFVKV 311 (502)
T ss_pred HcC-CCEEEE
Confidence 998 999855
No 367
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=94.00 E-value=0.1 Score=44.51 Aligned_cols=117 Identities=20% Similarity=0.240 Sum_probs=66.5
Q ss_pred HHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcH
Q 025135 34 AIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPL 113 (257)
Q Consensus 34 a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~ 113 (257)
..++|.|.|-+|.=. ..-+.++++.||+. |. ..|+=+++. .+.
T Consensus 76 ~~~~g~~~i~~H~E~--------------------------~~~~~~~i~~ik~~-g~-k~GialnP~---------T~~ 118 (201)
T PF00834_consen 76 FAEAGADYITFHAEA--------------------------TEDPKETIKYIKEA-GI-KAGIALNPE---------TPV 118 (201)
T ss_dssp HHHHT-SEEEEEGGG--------------------------TTTHHHHHHHHHHT-TS-EEEEEE-TT---------S-G
T ss_pred HHhcCCCEEEEcccc--------------------------hhCHHHHHHHHHHh-CC-CEEEEEECC---------CCc
Confidence 356899999998643 12366789999985 32 578888874 222
Q ss_pred HHHHHHHHHHHhcCCccCCceeEEEee--CCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-----CCcEEEeCCCCHHH
Q 025135 114 GLGLAVIQGLNKLQIDQGAKLTYLHVT--QPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-----QGTFICSGGFTREL 186 (257)
Q Consensus 114 ~~~~~l~~~L~~~G~~~~~~vd~i~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~~G~it~~~ 186 (257)
+.. .+.|. . +|++.+. +|.+.+.. ..+....-++++++.. +..+.+=||++.+.
T Consensus 119 ~~~---~~~l~-~-------vD~VlvMsV~PG~~Gq~--------f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~ 179 (201)
T PF00834_consen 119 EEL---EPYLD-Q-------VDMVLVMSVEPGFGGQK--------FIPEVLEKIRELRKLIPENGLDFEIEVDGGINEEN 179 (201)
T ss_dssp GGG---TTTGC-C-------SSEEEEESS-TTTSSB----------HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTT
T ss_pred hHH---HHHhh-h-------cCEEEEEEecCCCCccc--------ccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHH
Confidence 221 11122 1 6666654 34332221 1122223333333332 34577779999999
Q ss_pred HHHHHHcCCCcEEEechHHhh
Q 025135 187 GIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 187 a~~~l~~g~~D~V~igR~~ia 207 (257)
+..+.+.| +|.+..|+.+..
T Consensus 180 ~~~~~~aG-ad~~V~Gs~iF~ 199 (201)
T PF00834_consen 180 IKQLVEAG-ADIFVAGSAIFK 199 (201)
T ss_dssp HHHHHHHT---EEEESHHHHT
T ss_pred HHHHHHcC-CCEEEECHHHhC
Confidence 99999998 999999998765
No 368
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.96 E-value=5 Score=36.87 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=84.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHH-HcCC--CEEEecccccchhh-hcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHH
Q 025135 13 QALQTSEIPEVIDQYRQAALNAI-QAGF--DGIEIHGAHGYLID-QFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVA 88 (257)
Q Consensus 13 ~~lt~~eI~~ii~~f~~AA~~a~-~aGf--DgVEIh~a~GyLl~-qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~ 88 (257)
..+|.+++.+-|.+|......+. ++|. |.|+| |--++ -||.|..+ ....++=.+|+..-+++||+.
T Consensus 97 ~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQV----GNEin~Gmlwp~g~------~~~~~~~a~ll~ag~~AVr~~ 166 (332)
T PF07745_consen 97 ANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQV----GNEINNGMLWPDGK------PSNWDNLAKLLNAGIKAVREV 166 (332)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEE----SSSGGGESTBTTTC------TT-HHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEe----CccccccccCcCCC------ccCHHHHHHHHHHHHHHHHhc
Confidence 34677999999999999987665 5785 78876 22222 36666544 455677788999999999995
Q ss_pred hCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHH
Q 025135 89 IGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTW 168 (257)
Q Consensus 89 vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (257)
.+.-.|.+-+... ...+....+...|...|+ +.|+|-++- |... .+........+..+
T Consensus 167 ~p~~kV~lH~~~~---------~~~~~~~~~f~~l~~~g~----d~DviGlSy--YP~w-------~~~l~~l~~~l~~l 224 (332)
T PF07745_consen 167 DPNIKVMLHLANG---------GDNDLYRWFFDNLKAAGV----DFDVIGLSY--YPFW-------HGTLEDLKNNLNDL 224 (332)
T ss_dssp SSTSEEEEEES-T---------TSHHHHHHHHHHHHHTTG----G-SEEEEEE---STT-------ST-HHHHHHHHHHH
T ss_pred CCCCcEEEEECCC---------CchHHHHHHHHHHHhcCC----CcceEEEec--CCCC-------cchHHHHHHHHHHH
Confidence 5443577766531 234567788999999983 477776542 1100 00122233455667
Q ss_pred HHHhCCcEEEe
Q 025135 169 RRSYQGTFICS 179 (257)
Q Consensus 169 r~~~~~pvi~~ 179 (257)
++.++.||+++
T Consensus 225 ~~ry~K~V~V~ 235 (332)
T PF07745_consen 225 ASRYGKPVMVV 235 (332)
T ss_dssp HHHHT-EEEEE
T ss_pred HHHhCCeeEEE
Confidence 78888887765
No 369
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.94 E-value=1.7 Score=40.21 Aligned_cols=149 Identities=12% Similarity=0.055 Sum_probs=84.0
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE---EccCCCC---
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR---MSPAIDH--- 104 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr---ls~~~~~--- 104 (257)
.++|.++||+.|=|-++| | |..|.+. ++|...+...++++..+. .|- .|-.- +...++.
T Consensus 91 i~~ai~~GftSVMiDgS~-------l-~~~~~~~-----p~eENI~~Tkevve~Ah~-~Gv-~VEaELG~vgg~e~~~~g 155 (347)
T PRK09196 91 CQRAIQLGFTSVMMDGSL-------K-ADGKTPA-----SYEYNVDVTRKVVEMAHA-CGV-SVEGELGCLGSLETGMGG 155 (347)
T ss_pred HHHHHHcCCCEEEecCCC-------C-cccCCCC-----CHHHHHHHHHHHHHHHHH-cCC-eEEEEEeeccCccccccc
Confidence 566788899999988877 1 2233332 468889999999998864 343 22222 2211110
Q ss_pred --CCC---C------CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-
Q 025135 105 --LDA---T------DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY- 172 (257)
Q Consensus 105 --~~~---~------~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~- 172 (257)
++. . ...+.+++.+|+ ++.| +|++.++-++.++.+... ..+..+....+.+++|++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~T~PeeA~~Fv---~~Tg------vD~LAvaiGT~HG~Yk~~-~~p~~~~LdfdrL~eI~~~v~ 225 (347)
T PRK09196 156 EEDGHGAEGKLSHDQLLTDPEEAADFV---KKTQ------VDALAIAIGTSHGAYKFT-RKPTGDVLAIDRIKEIHARLP 225 (347)
T ss_pred cccCcccccccchhhcCCCHHHHHHHH---HHhC------cCeEhhhhccccCCCCCC-CCCChhhccHHHHHHHHhcCC
Confidence 000 0 012355555554 4668 888876655444332110 00000113346778899999
Q ss_pred CCcEEEeCCC-----------------------CHHHHHHHHHcCCCcEEEechHH
Q 025135 173 QGTFICSGGF-----------------------TRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 173 ~~pvi~~G~i-----------------------t~~~a~~~l~~g~~D~V~igR~~ 205 (257)
++|++.=|+- ..++..++++.| +-=|=++.-+
T Consensus 226 ~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~G-I~KINi~Tdl 280 (347)
T PRK09196 226 NTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHG-VRKVNIDTDL 280 (347)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC-CceEEeChHH
Confidence 6997766654 346788888887 4445555444
No 370
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=93.90 E-value=1.7 Score=43.14 Aligned_cols=134 Identities=16% Similarity=0.147 Sum_probs=80.1
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDS 110 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~ 110 (257)
.++|.++|.|.|.|..+. |..+-+...++.+|+. |. .+.+-++-. . . ..
T Consensus 102 v~~A~~~Gvd~irif~~l------------------------nd~~n~~~~i~~ak~~-G~-~v~~~i~~t-~---~-p~ 150 (592)
T PRK09282 102 VEKAAENGIDIFRIFDAL------------------------NDVRNMEVAIKAAKKA-GA-HVQGTISYT-T---S-PV 150 (592)
T ss_pred HHHHHHCCCCEEEEEEec------------------------ChHHHHHHHHHHHHHc-CC-EEEEEEEec-c---C-CC
Confidence 345678899998876554 1224455666776653 43 232223211 0 0 01
Q ss_pred CcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEe----CCCCHHH
Q 025135 111 DPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICS----GGFTREL 186 (257)
Q Consensus 111 ~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~----G~it~~~ 186 (257)
.+.+...++++.+.++| ++.|.+.... + ...+......++.+|+.+++||-.= .|+....
T Consensus 151 ~t~~~~~~~a~~l~~~G------ad~I~i~Dt~----G------~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An 214 (592)
T PRK09282 151 HTIEKYVELAKELEEMG------CDSICIKDMA----G------LLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMT 214 (592)
T ss_pred CCHHHHHHHHHHHHHcC------CCEEEECCcC----C------CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHH
Confidence 35788899999999999 7877765421 1 1122334566778898888775431 2223567
Q ss_pred HHHHHHcCCCcEE-----EechHHhhCchHHH
Q 025135 187 GIQALAEDGADLV-----AYGRLFISNPDLVL 213 (257)
Q Consensus 187 a~~~l~~g~~D~V-----~igR~~iadP~l~~ 213 (257)
...+++.| ||.| +||++. .||.+-.
T Consensus 215 ~laAv~aG-ad~vD~ai~g~g~~a-gn~~~e~ 244 (592)
T PRK09282 215 YLKAVEAG-VDIIDTAISPLAFGT-SQPPTES 244 (592)
T ss_pred HHHHHHhC-CCEEEeeccccCCCc-CCHhHHH
Confidence 77899988 8776 455543 5776643
No 371
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=93.85 E-value=4.1 Score=39.00 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=58.3
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhh-hcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhC
Q 025135 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLID-QFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIG 90 (257)
Q Consensus 12 p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~-qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg 90 (257)
...|+.+|.-.|++.. .++||+.||+.+|.+|--+ .|+|+. ..|.++.+|+.++
T Consensus 20 ~~~~~t~dkl~ia~~L-------d~~Gv~~IE~~ggatf~~~~~f~~e~------------------p~e~l~~l~~~~~ 74 (448)
T PRK12331 20 ATRMTTEEMLPILEKL-------DNAGYHSLEMWGGATFDACLRFLNED------------------PWERLRKIRKAVK 74 (448)
T ss_pred CcccCHHHHHHHHHHH-------HHcCCCEEEecCCccchhhhccCCCC------------------HHHHHHHHHHhCC
Confidence 3468888877776654 4579999999766555322 677653 5677888888765
Q ss_pred CCeEE--EEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeC
Q 025135 91 ADRVG--VRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ 141 (257)
Q Consensus 91 ~~~v~--vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~ 141 (257)
.-++. +|..-..+|.. .+.+....+++...+.| ++.+.+..
T Consensus 75 ~~~l~~l~r~~N~~G~~~----~pddvv~~~v~~A~~~G------vd~irif~ 117 (448)
T PRK12331 75 KTKLQMLLRGQNLLGYRN----YADDVVESFVQKSVENG------IDIIRIFD 117 (448)
T ss_pred CCEEEEEecccccccccc----CchhhHHHHHHHHHHCC------CCEEEEEE
Confidence 44443 44321112211 12233455677778889 78887654
No 372
>PLN00191 enolase
Probab=93.83 E-value=1.8 Score=41.45 Aligned_cols=69 Identities=4% Similarity=0.026 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHh-cCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC--CHHHHH
Q 025135 112 PLGLGLAVIQGLNK-LQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF--TRELGI 188 (257)
Q Consensus 112 ~~~~~~~l~~~L~~-~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i--t~~~a~ 188 (257)
+.++++++.+.|.+ .+ +.||+ +|- ....+...+.+++..++||++.-.+ +++++.
T Consensus 296 s~~e~i~~~~~L~~~y~------I~~IE--DPl--------------~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~ 353 (457)
T PLN00191 296 SGDELIDLYKEFVSDYP------IVSIE--DPF--------------DQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVA 353 (457)
T ss_pred CHHHHHHHHHHHhhcCC------cEEEE--CCC--------------CcccHHHHHHHHccCCCcEEccCcccCCHHHHH
Confidence 56677777777655 56 66665 552 1222345566888888888776554 499999
Q ss_pred HHHHcCCCcEEEec
Q 025135 189 QALAEDGADLVAYG 202 (257)
Q Consensus 189 ~~l~~g~~D~V~ig 202 (257)
++++.+.||.|.+=
T Consensus 354 ~~I~~~aad~i~iK 367 (457)
T PLN00191 354 KAIQEKACNALLLK 367 (457)
T ss_pred HHHHhCCCCEEEec
Confidence 99999999998763
No 373
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=93.81 E-value=3.6 Score=38.01 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=83.1
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC---eEEEEEccCCCC---
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD---RVGVRMSPAIDH--- 104 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~---~v~vrls~~~~~--- 104 (257)
.++|.++||+.|=|-+++ | |. ++-.=+++...+...++++-.+.. |-. -|| ++...+..
T Consensus 89 i~~Ai~~GFtSVMiDgS~--l------~~-----~~~~~p~eENI~~Tkevve~Ah~~-GvsVEaELG-~igg~e~~~~g 153 (347)
T TIGR01521 89 CQRAIQLGFTSVMMDGSL--R------ED-----AKTPADYDYNVRVTAEVVAFAHAV-GASVEGELG-CLGSLETGMGE 153 (347)
T ss_pred HHHHHHcCCCEEeecCcC--C------cc-----cCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEee-ecccccccccc
Confidence 456778899888888776 1 11 222335788899999999988753 221 122 12211100
Q ss_pred --CCC---------CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-
Q 025135 105 --LDA---------TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY- 172 (257)
Q Consensus 105 --~~~---------~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~- 172 (257)
++. ....+.+++.+|++ +.| +|.+.++-++.++.+... ..+.+.......+++|++.+
T Consensus 154 ~~d~~~~~~~~~~~~~~T~PeeA~~Fv~---~Tg------vD~LAvaiGt~HG~Yk~~-~~p~~~~Ld~~rL~eI~~~v~ 223 (347)
T TIGR01521 154 AEDGHGFEGVLDHSQLLTDPEEAADFVK---KTK------VDALAVAIGTSHGAYKFT-RKPTGEVLAIQRIEEIHARLP 223 (347)
T ss_pred cccCcccccccchhhcCCCHHHHHHHHH---HHC------cCEEehhcccccCCcCCC-CCCChhhcCHHHHHHHHccCC
Confidence 000 00124556655544 567 888877655554433210 00000113346678899999
Q ss_pred CCcEEEeCCC-C----------------------HHHHHHHHHcCCCcEEEechHH
Q 025135 173 QGTFICSGGF-T----------------------RELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 173 ~~pvi~~G~i-t----------------------~~~a~~~l~~g~~D~V~igR~~ 205 (257)
++|++.=|+- . .++..++++.| +-=|=++.-+
T Consensus 224 ~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~G-I~KVNi~Tdl 278 (347)
T TIGR01521 224 DTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYG-VRKVNIDTDL 278 (347)
T ss_pred CCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCC-CeeEEeChHH
Confidence 6997776654 3 36788888888 4445454443
No 374
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=93.80 E-value=1.3 Score=41.52 Aligned_cols=111 Identities=8% Similarity=0.006 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEee--CCCcccCCCcCCCC
Q 025135 77 FLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVT--QPRYTAYGQTESGR 154 (257)
Q Consensus 77 ~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~--~~~~~~~~~~~~~~ 154 (257)
++.+ ++.+++.+++.+|.+=|... .+.+++.++++.+++.| +|++++. -|....... . +.
T Consensus 100 ~l~~-i~~~k~~~~~~pvIaSi~~~---------~s~~~~~~~a~~~e~~G------aD~iELNiSCPn~~~~r~-~-g~ 161 (385)
T PLN02495 100 MLAE-FKQLKEEYPDRILIASIMEE---------YNKDAWEEIIERVEETG------VDALEINFSCPHGMPERK-M-GA 161 (385)
T ss_pred HHHH-HHHHHhhCCCCcEEEEccCC---------CCHHHHHHHHHHHHhcC------CCEEEEECCCCCCCCcCc-c-ch
Confidence 4444 56677666544666655321 35788999999999999 8888753 332210000 0 00
Q ss_pred -CCCchh-HHHHHHHHHHHhCCcEEE--eCCC-CHHHHHHHHHcCCCcEEEechHH
Q 025135 155 -PGTEDE-EAQLLRTWRRSYQGTFIC--SGGF-TRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 155 -~~~~~~-~~~~~~~ir~~~~~pvi~--~G~i-t~~~a~~~l~~g~~D~V~igR~~ 205 (257)
....+. ..+.++.+|+..++||++ +-.+ +.....+++.++++|.|.+-=-+
T Consensus 162 ~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 162 AVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred hhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 001122 223456778888899875 3344 44455554555569998875443
No 375
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=93.79 E-value=0.98 Score=40.80 Aligned_cols=111 Identities=16% Similarity=0.028 Sum_probs=65.3
Q ss_pred cCCcCCCCCCc--hhhHhhHH---HHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCce
Q 025135 60 INDRTDEYGGS--IENRCRFL---MQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKL 134 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~~---~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~v 134 (257)
.|+|-+-+-.- .+|-..+. .+.|+.+|+..+..+|.|-.. +.+++.+ ..++| +
T Consensus 172 ~~HR~gLsd~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~------------sleea~e----a~~~g------a 229 (296)
T PRK09016 172 ANHRLGLSDAFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVE------------NLDELDQ----ALKAG------A 229 (296)
T ss_pred ccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeC------------CHHHHHH----HHHcC------C
Confidence 35666555442 34444444 466667776665445555443 3554433 34577 7
Q ss_pred eEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 135 TYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 135 d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
|.|-+... ........+..++. ++.+.++|||+.+...++.+.| +|++++|...-+=|
T Consensus 230 DiI~LDn~--------------s~e~~~~av~~~~~--~~~ieaSGGI~~~ni~~yA~tG-VD~Is~galthsa~ 287 (296)
T PRK09016 230 DIIMLDNF--------------TTEQMREAVKRTNG--RALLEVSGNVTLETLREFAETG-VDFISVGALTKHVQ 287 (296)
T ss_pred CEEEeCCC--------------ChHHHHHHHHhhcC--CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCC
Confidence 77765331 11111222222222 4568899999999999998887 99999998655443
No 376
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=93.78 E-value=4.4 Score=37.43 Aligned_cols=147 Identities=10% Similarity=0.091 Sum_probs=83.2
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEc---cCCCC---
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMS---PAIDH--- 104 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls---~~~~~--- 104 (257)
.++|.++||+.|=|-++| | |. ++-.-+++...+...|+++..+. .|- .|-.-|. ..+..
T Consensus 91 i~~Ai~~GFtSVMiDgS~-------l-~~-----~~~~~~~eeNI~~Trevve~Ah~-~Gv-sVEaELG~igg~e~~~~g 155 (347)
T PRK13399 91 CQSAIRSGFTSVMMDGSL-------L-AD-----GKTPASYDYNVDVTRRVTEMAHA-VGV-SVEGELGCLGSLETGEAG 155 (347)
T ss_pred HHHHHhcCCCEEEEeCCC-------C-CC-----CCCccCHHHHHHHHHHHHHHHHH-cCC-eEEEEeeeccCccccccc
Confidence 467778899999888877 1 11 22233578889999999998664 332 2222221 11100
Q ss_pred --CCC---------CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-
Q 025135 105 --LDA---------TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY- 172 (257)
Q Consensus 105 --~~~---------~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~- 172 (257)
++. ....+.+++.+|++ +.| +|.+.++-++.++.+... ..+.++....+.+++|++.+
T Consensus 156 ~ed~~~~~~~~~~~~~~T~PeeA~~Fv~---~Tg------vD~LAvaiGt~HG~Yk~~-~~p~~~~L~~drl~eI~~~v~ 225 (347)
T PRK13399 156 EEDGVGAEGKLSHDQMLTDPDQAVDFVQ---RTG------VDALAIAIGTSHGAYKFT-RKPDGDILAIDRIEEIHARLP 225 (347)
T ss_pred ccCCccccccccccccCCCHHHHHHHHH---HHC------cCEEhhhhccccCCcCCC-CCCChhhccHHHHHHHHhhcC
Confidence 000 00234566666654 468 888876655544433110 00101113346778899999
Q ss_pred CCcEEEeCCC-C----------------------HHHHHHHHHcCCCcEEEech
Q 025135 173 QGTFICSGGF-T----------------------RELGIQALAEDGADLVAYGR 203 (257)
Q Consensus 173 ~~pvi~~G~i-t----------------------~~~a~~~l~~g~~D~V~igR 203 (257)
++|++.=|+- . .++..++++.| +-=|=++.
T Consensus 226 ~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~G-I~KINi~T 278 (347)
T PRK13399 226 NTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHG-VRKVNIDT 278 (347)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC-CeEEEeCh
Confidence 6997776654 3 37788888888 44444443
No 377
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.75 E-value=3.1 Score=34.67 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhCCCeEEE--EEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCC
Q 025135 77 FLMQLVREVIVAIGADRVGV--RMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGR 154 (257)
Q Consensus 77 ~~~eiv~aiR~~vg~~~v~v--rls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~ 154 (257)
+-.+.++.+|+..++.++.+ ++.. .. ..+++.+.++| ++++.++...
T Consensus 39 ~g~~~i~~i~~~~~~~~i~~~~~v~~-----------~~---~~~~~~~~~aG------ad~i~~h~~~----------- 87 (202)
T cd04726 39 EGMEAVRALREAFPDKIIVADLKTAD-----------AG---ALEAEMAFKAG------ADIVTVLGAA----------- 87 (202)
T ss_pred hCHHHHHHHHHHCCCCEEEEEEEecc-----------cc---HHHHHHHHhcC------CCEEEEEeeC-----------
Confidence 34788999998765445543 4331 11 23567788999 8888876421
Q ss_pred CCCchhHHHHHHHHHHHhCCcEEE--eCCCCHHHHHHHHHcCCCcEEEec
Q 025135 155 PGTEDEEAQLLRTWRRSYQGTFIC--SGGFTRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 155 ~~~~~~~~~~~~~ir~~~~~pvi~--~G~it~~~a~~~l~~g~~D~V~ig 202 (257)
........++.+++ .++++++ .+-.|++++.+++..| +|+|.+.
T Consensus 88 --~~~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~-~d~v~~~ 133 (202)
T cd04726 88 --PLSTIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLG-VDIVILH 133 (202)
T ss_pred --CHHHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCC-CCEEEEc
Confidence 01112234444443 4677664 3556899988866665 9999884
No 378
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.74 E-value=0.49 Score=43.26 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC-CHHHHHHHHHc
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF-TRELGIQALAE 193 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i-t~~~a~~~l~~ 193 (257)
..+.++.+.++| +++|++.... + ......+.++.+|+..+ +||++ |.+ |++.|..+++.
T Consensus 95 ~~~~~~~l~eag------v~~I~vd~~~----G--------~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~a 155 (325)
T cd00381 95 DKERAEALVEAG------VDVIVIDSAH----G--------HSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDA 155 (325)
T ss_pred HHHHHHHHHhcC------CCEEEEECCC----C--------CcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhc
Confidence 456677788889 8887765311 0 11233466778888774 67776 666 99999999998
Q ss_pred CCCcEEEe
Q 025135 194 DGADLVAY 201 (257)
Q Consensus 194 g~~D~V~i 201 (257)
| +|+|.+
T Consensus 156 G-aD~I~v 162 (325)
T cd00381 156 G-ADGVKV 162 (325)
T ss_pred C-CCEEEE
Confidence 7 999987
No 379
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=93.72 E-value=4.5 Score=35.58 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=37.9
Q ss_pred HHHHHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 165 LRTWRRSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 165 ~~~ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
...+...++ ..+|.-+|+ |++++..+. .+ +|.|.+|..++..++....++
T Consensus 192 ~~~L~~~ip~~~~~IsESGI~t~~d~~~l~-~~-~davLvG~~lm~~~d~~~~~~ 244 (247)
T PRK13957 192 VEEVAAFLPPNIVKVGESGIESRSDLDKFR-KL-VDAALIGTYFMEKKDIRKAWL 244 (247)
T ss_pred HHHHHhhCCCCcEEEEcCCCCCHHHHHHHH-Hh-CCEEEECHHHhCCCCHHHHHH
Confidence 344555553 345666888 999999866 45 999999999999999776664
No 380
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.71 E-value=1 Score=40.65 Aligned_cols=112 Identities=15% Similarity=0.049 Sum_probs=66.9
Q ss_pred cCCcCCCCCCc--hhhHhhHH---HHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCce
Q 025135 60 INDRTDEYGGS--IENRCRFL---MQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKL 134 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~~---~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~v 134 (257)
.|||-+-+-+- .+|-.++. .+.++++|+..+...|-|... +.+++.+ ..++| +
T Consensus 169 ~nHR~gLsD~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEve------------tleea~e----A~~aG------a 226 (294)
T PRK06978 169 ENQRLALYDGILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVE------------TLAQLET----ALAHG------A 226 (294)
T ss_pred cCcCCCCCceEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcC------------CHHHHHH----HHHcC------C
Confidence 46777666553 34555554 366777776554324554442 3554433 44688 7
Q ss_pred eEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCch
Q 025135 135 TYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPD 210 (257)
Q Consensus 135 d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~ 210 (257)
|.|-+..- ........+..++. .+.+-++||+|++.+.++.+.| +|+|++|....+=|+
T Consensus 227 DiImLDnm--------------spe~l~~av~~~~~--~~~lEaSGGIt~~ni~~yA~tG-VD~IS~galthsa~~ 285 (294)
T PRK06978 227 QSVLLDNF--------------TLDMMREAVRVTAG--RAVLEVSGGVNFDTVRAFAETG-VDRISIGALTKDVRA 285 (294)
T ss_pred CEEEECCC--------------CHHHHHHHHHhhcC--CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCcc
Confidence 77765331 11111222222222 3458899999999999998887 999999987665554
No 381
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=93.71 E-value=1.4 Score=37.38 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe--EEEEEccCCC
Q 025135 26 QYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR--VGVRMSPAID 103 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~--v~vrls~~~~ 103 (257)
.|.+.++.+.++|.|.|++-...| .+-.+..+..+.++.+++.++ .+ +.+..+
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~~~d~--------------------~~~~~~~~~~~~~~~i~~~~~-~~~~v~l~v~---- 71 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVDVMDG--------------------HFVPNLTIGPPVVEAIRKVTK-LPLDVHLMVE---- 71 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeCccC--------------------CcCCCcCcCHHHHHHHHhcCC-CcEEEEeeeC----
Confidence 466778888999999999853332 111122356788899998775 23 334443
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ 141 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~ 141 (257)
+.+. .++.+.+.| ++.+.+|.
T Consensus 72 --------d~~~---~i~~~~~~g------~d~v~vh~ 92 (220)
T PRK05581 72 --------NPDR---YVPDFAKAG------ADIITFHV 92 (220)
T ss_pred --------CHHH---HHHHHHHcC------CCEEEEee
Confidence 1222 234455788 88877775
No 382
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.71 E-value=0.44 Score=43.49 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=31.3
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCC------C-cEEEechHHhhCchH
Q 025135 173 QGTFICSGGF-TRELGIQALAEDG------A-DLVAYGRLFISNPDL 211 (257)
Q Consensus 173 ~~pvi~~G~i-t~~~a~~~l~~g~------~-D~V~igR~~iadP~l 211 (257)
++|||+.||| +...+..++.-|. + +.|.||..|++-++-
T Consensus 165 ~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 165 KIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred CccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhh
Confidence 7999999999 8887777666663 2 899999999975544
No 383
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.71 E-value=0.84 Score=40.36 Aligned_cols=78 Identities=15% Similarity=0.016 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHH
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALA 192 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~ 192 (257)
.+.+++-++.++++| ++.+-+.. . + .+.++.|.+.+++|+|+-|.=..-+.+-++
T Consensus 157 a~~~i~ra~a~~~AG------A~~i~lE~---------------v-~--~~~~~~i~~~v~iP~igiGaG~~~dgqvlv- 211 (254)
T cd06557 157 AERLLEDALALEEAG------AFALVLEC---------------V-P--AELAKEITEALSIPTIGIGAGPDCDGQVLV- 211 (254)
T ss_pred HHHHHHHHHHHHHCC------CCEEEEcC---------------C-C--HHHHHHHHHhCCCCEEEeccCCCCCceeeh-
Confidence 466778899999999 66665422 1 1 246788999999999977642111111111
Q ss_pred cCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 193 EDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 193 ~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
.-|++++... --|-|+++..+..
T Consensus 212 --~~D~lG~~~~--~~p~f~k~~~~~~ 234 (254)
T cd06557 212 --WHDMLGLSPG--FKPKFVKRYADLG 234 (254)
T ss_pred --HHhhcCCCCC--CCCCcHHHHhhhH
Confidence 1345555433 2577777776543
No 384
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=93.69 E-value=0.21 Score=43.76 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=36.9
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 173 QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 173 ~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
+++|+.+|+++++++.+++..+.+|.+.+|++.+ +|+-+.++.
T Consensus 199 ~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl-~~~~f~~Ii 241 (242)
T cd00311 199 KVRILYGGSVNPENAAELLAQPDIDGVLVGGASL-KAESFLDII 241 (242)
T ss_pred ceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhh-CHHHHHHHh
Confidence 3678888999999999999999999999999999 576666553
No 385
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.69 E-value=0.89 Score=40.43 Aligned_cols=78 Identities=18% Similarity=0.059 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHH
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALA 192 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~ 192 (257)
.+.+++-++.++++| ++.+-+.. . + .+.++.|.+.+++|+|+-|.=..-+.+-++
T Consensus 160 a~~~i~ra~a~~eAG------A~~i~lE~---------------v-~--~~~~~~i~~~l~iP~igiGaG~~~dgqvlv- 214 (264)
T PRK00311 160 AEKLLEDAKALEEAG------AFALVLEC---------------V-P--AELAKEITEALSIPTIGIGAGPDCDGQVLV- 214 (264)
T ss_pred HHHHHHHHHHHHHCC------CCEEEEcC---------------C-C--HHHHHHHHHhCCCCEEEeccCCCCCceeee-
Confidence 456788899999999 66665422 1 1 146778999999999876542111111111
Q ss_pred cCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 193 EDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 193 ~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
.-|++++...+ -|-|+++..+..
T Consensus 215 --~~D~lG~~~~~--~pkf~k~~~~~~ 237 (264)
T PRK00311 215 --WHDMLGLFSGF--KPKFVKRYADLA 237 (264)
T ss_pred --HHhhcCCCCCC--CCCchHhHhhhH
Confidence 13455553222 677887776654
No 386
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.68 E-value=4 Score=34.80 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=34.3
Q ss_pred HHHHHHHHHhC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchH
Q 025135 163 QLLRTWRRSYQ-GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDL 211 (257)
Q Consensus 163 ~~~~~ir~~~~-~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l 211 (257)
.+++.++.-++ +|++.+||++++.+.+.|+.|.+ .++.|-.+. +.++
T Consensus 133 ~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~-~~~ggs~l~-~~~~ 180 (201)
T PRK06015 133 AFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNV-VCVGGSWVA-PKEL 180 (201)
T ss_pred HHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCe-EEEEchhhC-Cchh
Confidence 45666776664 78999999999999999999856 444465554 4433
No 387
>PRK12999 pyruvate carboxylase; Reviewed
Probab=93.65 E-value=3.1 Score=44.45 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCC
Q 025135 23 VIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAI 102 (257)
Q Consensus 23 ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~ 102 (257)
++++|++ .|.++|.|.|-|..+. |..+-+...++++|++ |. ..-+-++...
T Consensus 628 v~~~~i~---~a~~~Gid~~rifd~l------------------------nd~~~~~~~i~~vk~~-g~-~~~~~i~ytg 678 (1146)
T PRK12999 628 VVRAFVR---EAAAAGIDVFRIFDSL------------------------NWVENMRVAIDAVRET-GK-IAEAAICYTG 678 (1146)
T ss_pred HHHHHHH---HHHHcCCCEEEEeccC------------------------ChHHHHHHHHHHHHHc-CC-eEEEEEEEEe
Confidence 3444444 4567899999886433 2345577788898887 54 2223333211
Q ss_pred CCCCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC
Q 025135 103 DHLDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG 181 (257)
Q Consensus 103 ~~~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~ 181 (257)
+..+. ....+.+...++++.++++| ++.|.+.... + ...+......++.+|+.+++||-.=+.
T Consensus 679 ~~~d~~~~~~~~~~~~~~a~~l~~~G------a~~i~ikDt~----G------~l~P~~~~~lv~~lk~~~~ipi~~H~H 742 (1146)
T PRK12999 679 DILDPARAKYDLDYYVDLAKELEKAG------AHILAIKDMA----G------LLKPAAAYELVSALKEEVDLPIHLHTH 742 (1146)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcC------CCEEEECCcc----C------CCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 11121 11246788899999999999 7777765421 0 112333456778899999888654322
Q ss_pred CC----HHHHHHHHHcCCCcEEEechHH----hhCchH
Q 025135 182 FT----RELGIQALAEDGADLVAYGRLF----ISNPDL 211 (257)
Q Consensus 182 it----~~~a~~~l~~g~~D~V~igR~~----iadP~l 211 (257)
-| ...+..+++.| ||.|-.+=.- ..||.+
T Consensus 743 nt~Gla~an~laA~~aG-ad~vD~av~glg~~tgn~~l 779 (1146)
T PRK12999 743 DTSGNGLATYLAAAEAG-VDIVDVAVASMSGLTSQPSL 779 (1146)
T ss_pred CCCchHHHHHHHHHHhC-CCEEEecchhhcCCcCCHHH
Confidence 22 55667889888 8887554333 356654
No 388
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=93.65 E-value=2 Score=43.32 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=38.8
Q ss_pred HHHHHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 165 LRTWRRSYQ--GTFICSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 165 ~~~ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
...+.+.++ ..+|.-+|| +++++..+...| +|.|.+|..++..||.-..++
T Consensus 201 t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G-~davLIGeslm~~~dp~~~~~ 254 (695)
T PRK13802 201 YNELAADLPDDVIKVAESGVFGAVEVEDYARAG-ADAVLVGEGVATADDHELAVE 254 (695)
T ss_pred HHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCC-CCEEEECHHhhCCCCHHHHHH
Confidence 344555553 335565788 999999999887 999999999999998655544
No 389
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.59 E-value=2.4 Score=36.40 Aligned_cols=140 Identities=19% Similarity=0.097 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
..+++.+.++|.|.|.+.....-+ ++...++-+.+.-.+.+.++++.+|+. |. .+.++.. +..
T Consensus 70 ~~~~~~~~~~g~~~i~i~~~~s~~----------~~~~~~~~~~~~~~~~~~~~v~~ak~~-g~---~v~~~~~-~~~-- 132 (237)
T PF00682_consen 70 ERAVEAAKEAGIDIIRIFISVSDL----------HIRKNLNKSREEALERIEEAVKYAKEL-GY---EVAFGCE-DAS-- 132 (237)
T ss_dssp HHHHHHHHHTTSSEEEEEEETSHH----------HHHHHTCSHHHHHHHHHHHHHHHHHHT-TS---EEEEEET-TTG--
T ss_pred HHHHHhhHhccCCEEEecCcccHH----------HHHHhhcCCHHHHHHHHHHHHHHHHhc-CC---ceEeCcc-ccc--
Confidence 344556778999999987655221 122334555566666677777777654 22 2345432 111
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC-C--
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF-T-- 183 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i-t-- 183 (257)
..+.+...++++.+.++| ++.|.+.... + ...+....+.++.+++.++ +|+-. ... +
T Consensus 133 --~~~~~~~~~~~~~~~~~g------~~~i~l~Dt~----G------~~~P~~v~~lv~~~~~~~~~~~l~~-H~Hnd~G 193 (237)
T PF00682_consen 133 --RTDPEELLELAEALAEAG------ADIIYLADTV----G------IMTPEDVAELVRALREALPDIPLGF-HAHNDLG 193 (237)
T ss_dssp --GSSHHHHHHHHHHHHHHT-------SEEEEEETT----S-------S-HHHHHHHHHHHHHHSTTSEEEE-EEBBTTS
T ss_pred --cccHHHHHHHHHHHHHcC------CeEEEeeCcc----C------CcCHHHHHHHHHHHHHhccCCeEEE-EecCCcc
Confidence 135788899999999999 7777665421 1 1123344567788999988 55433 222 2
Q ss_pred --HHHHHHHHHcCCCcEEEechH
Q 025135 184 --RELGIQALAEDGADLVAYGRL 204 (257)
Q Consensus 184 --~~~a~~~l~~g~~D~V~igR~ 204 (257)
...+..+++.| ||.|-.+-.
T Consensus 194 la~An~laA~~aG-a~~id~t~~ 215 (237)
T PF00682_consen 194 LAVANALAALEAG-ADRIDGTLG 215 (237)
T ss_dssp -HHHHHHHHHHTT--SEEEEBGG
T ss_pred chhHHHHHHHHcC-CCEEEccCc
Confidence 56677899988 988854433
No 390
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=93.56 E-value=3.1 Score=34.93 Aligned_cols=98 Identities=9% Similarity=-0.043 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCC
Q 025135 75 CRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGR 154 (257)
Q Consensus 75 ~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~ 154 (257)
.++..++|+.+|+..+...+.+-+... + .+ ...++.+.++| .+++.+|.-.
T Consensus 36 ~~~g~~~i~~l~~~~~~~~i~~d~k~~---------d-~~--~~~~~~~~~~G------ad~i~vh~~~----------- 86 (206)
T TIGR03128 36 KNEGIEAVKEMKEAFPDRKVLADLKTM---------D-AG--EYEAEQAFAAG------ADIVTVLGVA----------- 86 (206)
T ss_pred HHhCHHHHHHHHHHCCCCEEEEEEeec---------c-ch--HHHHHHHHHcC------CCEEEEeccC-----------
Confidence 456778999999987544444433211 0 11 12467788899 8888876421
Q ss_pred CCCchhHHHHHHHHHHHhCCcEEEe-CC-CC-HHHHHHHHHcCCCcEEEechHH
Q 025135 155 PGTEDEEAQLLRTWRRSYQGTFICS-GG-FT-RELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 155 ~~~~~~~~~~~~~ir~~~~~pvi~~-G~-it-~~~a~~~l~~g~~D~V~igR~~ 205 (257)
+.......++.+++ .+++++.. -+ -| .+++..+.+.| +|+|.+..++
T Consensus 87 --~~~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g-~d~v~~~pg~ 136 (206)
T TIGR03128 87 --DDATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELG-ADYIGVHTGL 136 (206)
T ss_pred --CHHHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcC-CCEEEEcCCc
Confidence 11111234444444 57776653 23 34 47778887765 9999986543
No 391
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.54 E-value=0.26 Score=47.76 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHc
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAE 193 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~ 193 (257)
+..+-++.|.++| +|.|.+..+. + .....+..+++||+.++...+..|++ |+++|+.+++.
T Consensus 248 ~~~~r~~~l~~ag------~d~i~iD~~~----g--------~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a 309 (505)
T PLN02274 248 SDKERLEHLVKAG------VDVVVLDSSQ----G--------DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA 309 (505)
T ss_pred cHHHHHHHHHHcC------CCEEEEeCCC----C--------CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc
Confidence 3456788899999 7777654321 1 11234567889999886334444666 99999999998
Q ss_pred CCCcEEEec
Q 025135 194 DGADLVAYG 202 (257)
Q Consensus 194 g~~D~V~ig 202 (257)
| +|+|.+|
T Consensus 310 G-aD~i~vg 317 (505)
T PLN02274 310 G-VDGLRVG 317 (505)
T ss_pred C-cCEEEEC
Confidence 8 9999553
No 392
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.54 E-value=5.3 Score=35.78 Aligned_cols=143 Identities=14% Similarity=0.062 Sum_probs=73.1
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCc-CC--cCCCCCCchhhHh--------hHHHHHHHHHHHHhCCCeEEEEEcc
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGI-ND--RTDEYGGSIENRC--------RFLMQLVREVIVAIGADRVGVRMSP 100 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~-N~--R~D~yGGs~enR~--------r~~~eiv~aiR~~vg~~~v~vrls~ 100 (257)
+.+.++||.+|++..-. ..|.. |. |--+....+.|++ +++.++.+..++ .+ .+|++=|..
T Consensus 30 ~~~~~~g~g~v~~kti~-------~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~-~~-~p~i~si~g 100 (301)
T PRK07259 30 RFYDLNGLGAIVTKSTT-------LEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEE-FD-TPIIANVAG 100 (301)
T ss_pred HHhhhcCCcEEEeCCCC-------CCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhc-cC-CcEEEEecc
Confidence 34457999999986533 11211 11 1111223344432 333343333222 22 267776653
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeC--CCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEE
Q 025135 101 AIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ--PRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFIC 178 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~ 178 (257)
.+.+++.+.++.++++|. +|+|++.- |....-+... .. ......+.++.+|+.+++||++
T Consensus 101 ----------~~~~~~~~~a~~~~~aG~-----~D~iElN~~cP~~~~gg~~~--~~-~~~~~~eiv~~vr~~~~~pv~v 162 (301)
T PRK07259 101 ----------STEEEYAEVAEKLSKAPN-----VDAIELNISCPNVKHGGMAF--GT-DPELAYEVVKAVKEVVKVPVIV 162 (301)
T ss_pred ----------CCHHHHHHHHHHHhccCC-----cCEEEEECCCCCCCCCcccc--cc-CHHHHHHHHHHHHHhcCCCEEE
Confidence 246888999999999962 56776632 2211000000 00 1123345677888888889876
Q ss_pred eCC--C-CHHHHHHHHHcCCCcEEEe
Q 025135 179 SGG--F-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 179 ~G~--i-t~~~a~~~l~~g~~D~V~i 201 (257)
=-. + +..+..+.+++.++|+|.+
T Consensus 163 Kl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 163 KLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred EcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 322 3 2233334455555998765
No 393
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.50 E-value=1.8 Score=38.78 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=65.6
Q ss_pred cCCcCCCCCCc--hhhHhhHH---HHHHHHHHHHhCCC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCc
Q 025135 60 INDRTDEYGGS--IENRCRFL---MQLVREVIVAIGAD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAK 133 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~~---~eiv~aiR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~ 133 (257)
.|+|-+-|-+- .+|-..+. .+.++++|+..+.. +|.|-.. +.+++.+ ..++|
T Consensus 157 ~~HR~gL~d~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~------------tleea~e----a~~~g------ 214 (281)
T PRK06106 157 MNHRFGLDDAVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVD------------TLDQLEE----ALELG------ 214 (281)
T ss_pred ccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeC------------CHHHHHH----HHHcC------
Confidence 46676665442 34544444 56677778777643 4555443 3555443 33678
Q ss_pred eeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 134 LTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 134 vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+|.|-+..- ........+..++ -..++-++||+|++.+.++.+.| +|+|++|....
T Consensus 215 aDiI~LDn~--------------s~e~l~~av~~~~--~~~~leaSGGI~~~ni~~yA~tG-VD~Is~Galth 270 (281)
T PRK06106 215 VDAVLLDNM--------------TPDTLREAVAIVA--GRAITEASGRITPETAPAIAASG-VDLISVGWLTH 270 (281)
T ss_pred CCEEEeCCC--------------CHHHHHHHHHHhC--CCceEEEECCCCHHHHHHHHhcC-CCEEEeChhhc
Confidence 777765431 1111112222222 23568899999999999998887 99999998665
No 394
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.43 E-value=0.57 Score=40.57 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHH----hCCcEEEeCCC-CHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRS----YQGTFICSGGF-TREL 186 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~----~~~pvi~~G~i-t~~~ 186 (257)
+.+++..+++.|.+.| +..++++-.. +...+.++.+++. .+.-+++.|.+ |+++
T Consensus 25 ~~~~a~~~~~al~~gG------i~~iEiT~~t---------------p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~ 83 (222)
T PRK07114 25 DVEVAKKVIKACYDGG------ARVFEFTNRG---------------DFAHEVFAELVKYAAKELPGMILGVGSIVDAAT 83 (222)
T ss_pred CHHHHHHHHHHHHHCC------CCEEEEeCCC---------------CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHH
Confidence 4788999999999999 8888876421 1122344445433 33237788888 9999
Q ss_pred HHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 187 GIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 187 a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
++++++.| ++|++-= -.||++.+..++
T Consensus 84 a~~a~~aG-A~FiVsP---~~~~~v~~~~~~ 110 (222)
T PRK07114 84 AALYIQLG-ANFIVTP---LFNPDIAKVCNR 110 (222)
T ss_pred HHHHHHcC-CCEEECC---CCCHHHHHHHHH
Confidence 99999998 9988743 368888887765
No 395
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.40 E-value=1.4 Score=39.51 Aligned_cols=109 Identities=19% Similarity=0.148 Sum_probs=64.8
Q ss_pred CCcCCCCCCc--hhhHhhH--HHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeE
Q 025135 61 NDRTDEYGGS--IENRCRF--LMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTY 136 (257)
Q Consensus 61 N~R~D~yGGs--~enR~r~--~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~ 136 (257)
|||-.-+-+- .+|-..+ +.+.|+.+|+..+..+|.|... +.+++.+ ..++| +|.
T Consensus 148 ~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~~~kIeVEv~------------~leea~~----a~~ag------aDi 205 (278)
T PRK08385 148 PHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSVYKVVEVEVE------------SLEDALK----AAKAG------ADI 205 (278)
T ss_pred ccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCCCCcEEEEeC------------CHHHHHH----HHHcC------cCE
Confidence 6666554442 2233322 4455677776665445666554 3554433 44678 776
Q ss_pred EEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh---CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 137 LHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY---QGTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 137 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
|-+... .........+.+++.. ++.+.++||++++...++.+.| +|++++|....
T Consensus 206 I~LDn~--------------~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tG-vD~Is~galt~ 263 (278)
T PRK08385 206 IMLDNM--------------TPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLD-VDVISLGALTH 263 (278)
T ss_pred EEECCC--------------CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcC-CCEEEeChhhc
Confidence 655431 1112222333344322 3458899999999999999887 99999998776
No 396
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=93.36 E-value=5.9 Score=35.72 Aligned_cols=163 Identities=14% Similarity=0.111 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
+-.|+.+.++||++|-+.+.. .=-+ + -..| ||-+. ..-+++.++.|..++. -||.+.+- .+|-
T Consensus 25 ~lSAri~e~aGf~ai~~ss~~-va~s--l-----G~pD--~g~l~--~~e~~~~~~~I~~~~~-lPv~aD~d--~GyG-- 87 (290)
T TIGR02321 25 PLVAKLAEQAGFGGIWGSGFE-LSAS--Y-----AVPD--ANILS--MSTHLEMMRAIASTVS-IPLIADID--TGFG-- 87 (290)
T ss_pred HHHHHHHHHcCCCEEEECHHH-HHHH--C-----CCCC--cccCC--HHHHHHHHHHHHhccC-CCEEEECC--CCCC--
Confidence 457888999999999975532 1100 0 1123 22211 2234555666666663 27877664 2332
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCccc-CCCcCCCCCCCchhHHHHHHHHHHHh----CCcEEEeCCC
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTA-YGQTESGRPGTEDEEAQLLRTWRRSY----QGTFICSGGF 182 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ir~~~----~~pvi~~G~i 182 (257)
++. ...+.++.++++| +.-|++....+.. .+....+... -.....++.+|+.+. +.+++.+.+.
T Consensus 88 ---~~~-~v~~tV~~~~~aG------vagi~IEDq~~pk~cg~~~~g~~~-l~~~ee~~~kI~Aa~~a~~~~d~~I~ART 156 (290)
T TIGR02321 88 ---NAV-NVHYVVPQYEAAG------ASAIVMEDKTFPKDTSLRTDGRQE-LVRIEEFQGKIAAATAARADRDFVVIARV 156 (290)
T ss_pred ---CcH-HHHHHHHHHHHcC------CeEEEEeCCCCCcccccccCCCcc-ccCHHHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 344 4677899999999 8888886532211 0000000000 011224455555433 2334444332
Q ss_pred -------C----HHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCC
Q 025135 183 -------T----RELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP 220 (257)
Q Consensus 183 -------t----~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~ 220 (257)
. .+-++...+.| +|.|.+ -+.+.+|+.+.++.+..+
T Consensus 157 Da~~~~~g~deAI~Ra~aY~eAG-AD~ifv-~~~~~~~~ei~~~~~~~~ 203 (290)
T TIGR02321 157 EALIAGLGQQEAVRRGQAYEEAG-ADAILI-HSRQKTPDEILAFVKSWP 203 (290)
T ss_pred ccccccCCHHHHHHHHHHHHHcC-CCEEEe-cCCCCCHHHHHHHHHhcC
Confidence 1 23355666776 999998 234588999999887543
No 397
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=93.25 E-value=4.3 Score=37.12 Aligned_cols=121 Identities=10% Similarity=0.017 Sum_probs=65.4
Q ss_pred chhhHhhHHHHHHHHHHHHhCCCeEEEE---EccCCCCCCCC--CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCc
Q 025135 70 SIENRCRFLMQLVREVIVAIGADRVGVR---MSPAIDHLDAT--DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRY 144 (257)
Q Consensus 70 s~enR~r~~~eiv~aiR~~vg~~~v~vr---ls~~~~~~~~~--~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~ 144 (257)
+++...+...++++..+. .|- .|-.- +...++..... ...+.+++.+|++ +.| +|.+.++-++.
T Consensus 120 p~eeNI~~T~evv~~Ah~-~Gv-sVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~---~Tg------vD~LAvaiGt~ 188 (321)
T PRK07084 120 PYEENVALTKKVVEYAHQ-FDV-TVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVK---KTG------VDSLAISIGTS 188 (321)
T ss_pred CHHHHHHHHHHHHHHHHH-cCC-eEEEEEeeecCccCCccCcccccCCHHHHHHHHH---HhC------CCEEeeccccc
Confidence 367788999999998884 332 22222 22111110000 1234566666654 468 88887766555
Q ss_pred ccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCC-----------------------CHHHHHHHHHcCCCcEEE
Q 025135 145 TAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGF-----------------------TRELGIQALAEDGADLVA 200 (257)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~i-----------------------t~~~a~~~l~~g~~D~V~ 200 (257)
++.+....+.. .+....+.+++|++.+ ++|++.=|+- ..++..++++.| +-=|=
T Consensus 189 HG~Y~~~~~~~-~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~G-I~KIN 266 (321)
T PRK07084 189 HGAYKFKPGQC-PPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSA-VCKIN 266 (321)
T ss_pred cccccCCCCCC-CCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcC-Cceec
Confidence 44331100000 1123346788999999 6997665443 346677777777 33344
Q ss_pred ech
Q 025135 201 YGR 203 (257)
Q Consensus 201 igR 203 (257)
++.
T Consensus 267 i~T 269 (321)
T PRK07084 267 IDS 269 (321)
T ss_pred cch
Confidence 443
No 398
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.17 E-value=5.5 Score=34.83 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
+-.|+.+.++||++|-+.+.. ++-- --..|.---+++ -+++.++.|...+. -||.+.+- .+|
T Consensus 19 ~~SAr~~e~~Gf~ai~~sg~~---~a~s-----~G~pD~~~lt~~----e~~~~~~~I~~~~~-iPv~vD~d--~Gy--- 80 (238)
T PF13714_consen 19 ALSARLAERAGFDAIATSGAG---VAAS-----LGYPDGGLLTLT----EMLAAVRRIARAVS-IPVIVDAD--TGY--- 80 (238)
T ss_dssp HHHHHHHHHTT-SEEEEHHHH---HHHH-----TTS-SSS-S-HH----HHHHHHHHHHHHSS-SEEEEE-T--TTS---
T ss_pred HHHHHHHHHcCCCEEEechHH---HHHH-----cCCCCCCCCCHH----HHHHHHHHHHhhhc-CcEEEEcc--ccc---
Confidence 357888999999999875322 1110 012232111222 23466666666663 38888764 233
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHH---hCCc-EEEeCCCC
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRS---YQGT-FICSGGFT 183 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~---~~~p-vi~~G~it 183 (257)
+++.....+.++.++++| +.-+++...+.... +.. --...+++.+||.. .+-+ ++.+.+-+
T Consensus 81 --G~~~~~v~~tv~~~~~aG------~agi~IEDq~~~~~-----~~~--l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTD 145 (238)
T PF13714_consen 81 --GNDPENVARTVRELERAG------AAGINIEDQRCGHG-----GKQ--LVSPEEMVAKIRAAVDARRDPDFVIIARTD 145 (238)
T ss_dssp --SSSHHHHHHHHHHHHHCT-------SEEEEESBSTTTS-----TT---B--HHHHHHHHHHHHHHHSSTTSEEEEEEC
T ss_pred --CchhHHHHHHHHHHHHcC------CcEEEeeccccCCC-----CCc--eeCHHHHHHHHHHHHHhccCCeEEEEEecc
Confidence 234667788999999999 88899876522111 010 11223444555444 3322 44333331
Q ss_pred ------------HHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 184 ------------RELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 184 ------------~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
.+-++.+.+.| +|.|.+- .+.+.+-++++.+
T Consensus 146 a~~~~~~~~deaI~R~~aY~eAG-AD~ifi~--~~~~~~~i~~~~~ 188 (238)
T PF13714_consen 146 AFLRAEEGLDEAIERAKAYAEAG-ADMIFIP--GLQSEEEIERIVK 188 (238)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHTT--SEEEET--TSSSHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHcC-CCEEEeC--CCCCHHHHHHHHH
Confidence 12344556666 9988864 2355555555544
No 399
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=93.15 E-value=4.1 Score=34.77 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=26.8
Q ss_pred CCCCCChhhHHHHHHHHH---------------HHHHHHHHcCCCEEEecccc
Q 025135 11 NPQALQTSEIPEVIDQYR---------------QAALNAIQAGFDGIEIHGAH 48 (257)
Q Consensus 11 ~p~~lt~~eI~~ii~~f~---------------~AA~~a~~aGfDgVEIh~a~ 48 (257)
-||-.|.++..+|++..- ...+.+.+.|.|.||||+..
T Consensus 33 SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~e 85 (207)
T PRK13958 33 SKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGTE 85 (207)
T ss_pred CcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCCC
Confidence 577788888777776331 23455667999999999643
No 400
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.12 E-value=7.1 Score=36.12 Aligned_cols=142 Identities=13% Similarity=0.011 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDAT 108 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~ 108 (257)
+-+++|.++|.|.|.|-.+.- +. +.+...+-+.+.=.+.+.++|+..|+. |. .|.+-++..-...+.
T Consensus 125 ~die~A~~~g~~~v~i~~s~S--------d~--h~~~n~~~t~~e~l~~~~~~v~~Ak~~-Gl-~v~~~is~~fg~p~~- 191 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFASAS--------ES--FSKSNINCSIEESLVRYREVALAAKKH-SI-PVRGYVSCVVGCPIE- 191 (347)
T ss_pred HHHHHHHHcCcCEEEEEEecC--------HH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CC-eEEEEEEeeecCCcc-
Confidence 445688899999988866541 22 222233444455455555666666653 32 232223311011111
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C----
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T---- 183 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t---- 183 (257)
...+.+...++++.+.++| ++.|.+.... + ...+......++.+++.++.+-+..... |
T Consensus 192 ~r~~~~~l~~~~~~~~~~G------ad~I~l~DT~----G------~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA 255 (347)
T PLN02746 192 GPVPPSKVAYVAKELYDMG------CYEISLGDTI----G------VGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQA 255 (347)
T ss_pred CCCCHHHHHHHHHHHHHcC------CCEEEecCCc----C------CcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChH
Confidence 1235788899999999999 7877765421 1 1123344566777888876433444433 3
Q ss_pred HHHHHHHHHcCCCcEEE
Q 025135 184 RELGIQALAEDGADLVA 200 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~ 200 (257)
...+..+++.| +|.|-
T Consensus 256 ~AN~lAA~~aG-a~~vd 271 (347)
T PLN02746 256 LANILVSLQMG-ISTVD 271 (347)
T ss_pred HHHHHHHHHhC-CCEEE
Confidence 45667889988 77663
No 401
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=93.07 E-value=6.1 Score=38.07 Aligned_cols=95 Identities=11% Similarity=0.247 Sum_probs=57.1
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchh-hhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhC
Q 025135 12 PQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLI-DQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIG 90 (257)
Q Consensus 12 p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl-~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg 90 (257)
...|+.+|.-.|++.. .++||+.||+.+|..|-. ..|+|+. ..|.++.+|+.++
T Consensus 19 ~~~~~t~dkl~Ia~~L-------d~~Gv~~IE~~ggatfd~~~~Fl~e~------------------p~e~l~~l~~~~~ 73 (467)
T PRK14041 19 ATRMRTEDMLPALEAF-------DRMGFYSMEVWGGATFDVCVRFLNEN------------------PWERLKEIRKRLK 73 (467)
T ss_pred CccCCHHHHHHHHHHH-------HHcCCCEEEecCCccchhhhcccCCC------------------HHHHHHHHHHhCC
Confidence 3468888887776654 456999999965543322 4566543 5678888888765
Q ss_pred CCeEEE--EEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeC
Q 025135 91 ADRVGV--RMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ 141 (257)
Q Consensus 91 ~~~v~v--rls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~ 141 (257)
..++.+ |..-..+|.. .+.+....+++...+.| ++.+.+..
T Consensus 74 ~~~l~~l~r~~N~~G~~~----~~dDvv~~fv~~A~~~G------vd~irif~ 116 (467)
T PRK14041 74 NTKIQMLLRGQNLVGYRH----YADDVVELFVKKVAEYG------LDIIRIFD 116 (467)
T ss_pred CCEEEEEeccccccCccc----ccchhhHHHHHHHHHCC------cCEEEEEE
Confidence 444433 5321112211 12222344677778889 78887654
No 402
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.93 E-value=1.9 Score=39.41 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 025135 161 EAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 161 ~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D~V~ig 202 (257)
..+.++.+|+.++.|++..|++ |++.|..+++.| +|.|-++
T Consensus 124 ~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG-ad~I~V~ 165 (321)
T TIGR01306 124 VINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG-ADATKVG 165 (321)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC-cCEEEEC
Confidence 4567888999998898888888 999999999998 9987655
No 403
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.91 E-value=5.7 Score=35.67 Aligned_cols=160 Identities=15% Similarity=0.143 Sum_probs=89.6
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
.-+|+.++++||.++-+.++- .-. ..=.|.. |- .. +.-+++.++.|-+++. -||.|.+- .+|.
T Consensus 28 ~~sA~la~~aGF~al~~sg~~-vA~-slG~pD~-------~~--~t-~~e~~~~vrrI~~a~~-lPv~vD~d--tGfG-- 90 (289)
T COG2513 28 AGSALLAERAGFKALYLSGAG-VAA-SLGLPDL-------GI--TT-LDEVLADARRITDAVD-LPVLVDID--TGFG-- 90 (289)
T ss_pred HHHHHHHHHcCCeEEEeccHH-HHH-hcCCCcc-------cc--cc-HHHHHHHHHHHHhhcC-CceEEecc--CCCC--
Confidence 357889999999999976542 111 1111211 11 11 2234555555555553 27888764 2332
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcc-cCCCcCCCCCCCchhHHHHHHHHHHHh---C-CcEEE----
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYT-AYGQTESGRPGTEDEEAQLLRTWRRSY---Q-GTFIC---- 178 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ir~~~---~-~pvi~---- 178 (257)
+ .....+.++.++++| +.-+|+...... ..+.. .+.. -....+.+.+||.++ . .+++.
T Consensus 91 ---~-~~nvartV~~~~~aG------~agi~iEDq~~pk~cgh~-~gk~--l~~~~e~v~rIkAa~~a~~~~~fvi~ART 157 (289)
T COG2513 91 ---E-ALNVARTVRELEQAG------AAGIHIEDQVGPKRCGHL-PGKE--LVSIDEMVDRIKAAVEARRDPDFVIIART 157 (289)
T ss_pred ---c-HHHHHHHHHHHHHcC------cceeeeeecccchhcCCC-CCCC--cCCHHHHHHHHHHHHHhccCCCeEEEeeh
Confidence 3 455667788999999 888888643221 01100 0110 112334555555544 2 23333
Q ss_pred ----eCCC--CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCC
Q 025135 179 ----SGGF--TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP 220 (257)
Q Consensus 179 ----~G~i--t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~ 220 (257)
.|++ ..+-+..+++.| +|+|-. +.+.+++.++++.+..+
T Consensus 158 da~~~~~ld~AI~Ra~AY~eAG-AD~if~--~al~~~e~i~~f~~av~ 202 (289)
T COG2513 158 DALLVEGLDDAIERAQAYVEAG-ADAIFP--EALTDLEEIRAFAEAVP 202 (289)
T ss_pred HHHHhccHHHHHHHHHHHHHcC-CcEEcc--ccCCCHHHHHHHHHhcC
Confidence 2344 245577788887 998754 56778999999887765
No 404
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.91 E-value=7.5 Score=35.75 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCc-C--CcCCCCC--CchhhHhhH----HHHHHHHHHHHhCCCeEEEEE
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGI-N--DRTDEYG--GSIENRCRF----LMQLVREVIVAIGADRVGVRM 98 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~-N--~R~D~yG--Gs~enR~r~----~~eiv~aiR~~vg~~~v~vrl 98 (257)
++..+.+.++||.+|++..-. ..|.. | -|...+- .++.|+.-+ +...++.+++.....||++-|
T Consensus 72 ~~~~~~~~~~G~Gavv~ktvt-------~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI 144 (344)
T PRK05286 72 GEAIDALGALGFGFVEVGTVT-------PRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINI 144 (344)
T ss_pred hHHHHHHHHcCCCEEEeCCcC-------CCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEE
Confidence 455556678999999986532 11111 2 1221221 234455444 445566666543222788888
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEe--eCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC---
Q 025135 99 SPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHV--TQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ--- 173 (257)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--- 173 (257)
..... .......+++.++++.+.+ + +|++++ +.|...... . ........+.++.+|+.++
T Consensus 145 ~~~~~---~~~~~~~~d~~~~~~~~~~-~------ad~lelN~scP~~~g~~---~--~~~~~~~~eiv~aVr~~~~~~~ 209 (344)
T PRK05286 145 GKNKD---TPLEDAVDDYLICLEKLYP-Y------ADYFTVNISSPNTPGLR---D--LQYGEALDELLAALKEAQAELH 209 (344)
T ss_pred ecCCC---CCcccCHHHHHHHHHHHHh-h------CCEEEEEccCCCCCCcc---c--ccCHHHHHHHHHHHHHHHhccc
Confidence 64311 1011346777788887765 4 667654 334321110 0 0011223456778898887
Q ss_pred --CcEEEe--CCCCH---HHHHHHHHcCCCcEEEech
Q 025135 174 --GTFICS--GGFTR---ELGIQALAEDGADLVAYGR 203 (257)
Q Consensus 174 --~pvi~~--G~it~---~~a~~~l~~g~~D~V~igR 203 (257)
+||++= -+++. .+..+.+++.++|+|.+-=
T Consensus 210 ~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 210 GYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 897753 23443 2334455555699887743
No 405
>PRK06852 aldolase; Validated
Probab=92.87 E-value=5.9 Score=35.98 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCC--CH----
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGF--TR---- 184 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~i--t~---- 184 (257)
..+.....++...++| .|+|.+--+.-. ... ..+.++++-+.. ++||+..||= +.
T Consensus 186 ~~~~ia~aaRiaaELG------ADIVKv~y~~~~-----------~~g-~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L 247 (304)
T PRK06852 186 DPHLIAGAAGVAACLG------ADFVKVNYPKKE-----------GAN-PAELFKEAVLAAGRTKVVCAGGSSTDPEEFL 247 (304)
T ss_pred cHHHHHHHHHHHHHHc------CCEEEecCCCcC-----------CCC-CHHHHHHHHHhCCCCcEEEeCCCCCCHHHHH
Confidence 3456667788889999 898876322100 001 123344455666 7897777774 43
Q ss_pred HHHHHHHHcCCCcEEEechHHhhCch
Q 025135 185 ELGIQALAEDGADLVAYGRLFISNPD 210 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~igR~~iadP~ 210 (257)
+...++|+.+++..|++||=....|+
T Consensus 248 ~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 248 KQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred HHHHHHHHHcCCceeeechhhhcCCC
Confidence 34567777456999999999997643
No 406
>PRK14567 triosephosphate isomerase; Provisional
Probab=92.85 E-value=0.38 Score=42.45 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=37.3
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 173 QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 173 ~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
+++|+.+|+++++.+.+++..+.+|.+.+|++.+ +|+-+.++.
T Consensus 202 ~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL-~~~~F~~Ii 244 (253)
T PRK14567 202 NIKIVYGGSLKAENAKDILSLPDVDGGLIGGASL-KAAEFNEII 244 (253)
T ss_pred cceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhh-cHHHHHHHH
Confidence 3678888889999999999999999999999998 776666665
No 407
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=92.84 E-value=2.2 Score=38.30 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=66.6
Q ss_pred cCCcCCCCCCc--hhhHhhHH------HHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccC
Q 025135 60 INDRTDEYGGS--IENRCRFL------MQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQG 131 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~~------~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~ 131 (257)
.|+|-+-+-+- .+|-..+. .+.++.+|+..+...|.|-+. +.+++.+ ..++|
T Consensus 150 ~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~------------tleqa~e----a~~ag---- 209 (284)
T PRK06096 150 LIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEAD------------TPKEAIA----ALRAQ---- 209 (284)
T ss_pred cCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECC------------CHHHHHH----HHHcC----
Confidence 46776665554 34555543 356777787776445555443 3555443 44688
Q ss_pred CceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHH-hCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhh
Q 025135 132 AKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRS-YQGTFICSGGFTRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 132 ~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
+|.|-+..- ...........+++. -++.+-++||+|++.+.++.+.| +|++++|-..-+
T Consensus 210 --aDiI~LDn~--------------~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tG-vD~Is~gal~~a 269 (284)
T PRK06096 210 --PDVLQLDKF--------------SPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCG-IRLFITSAPYYA 269 (284)
T ss_pred --CCEEEECCC--------------CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcC-CCEEEECccccC
Confidence 777765321 111112222223211 23458889999999999999887 999999976444
No 408
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=92.83 E-value=3.8 Score=40.53 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=76.8
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSD 111 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~ 111 (257)
++|.++|.|.|.|..+. | ..+-+.+.++.+|+. |. .+.+=++-. + +. ..
T Consensus 98 ~~a~~~Gvd~irif~~l------------n------------d~~n~~~~i~~ak~~-G~-~v~~~i~~t--~--~p-~~ 146 (582)
T TIGR01108 98 KKAVENGMDVFRIFDAL------------N------------DPRNLQAAIQAAKKH-GA-HAQGTISYT--T--SP-VH 146 (582)
T ss_pred HHHHHCCCCEEEEEEec------------C------------cHHHHHHHHHHHHHc-CC-EEEEEEEec--c--CC-CC
Confidence 34567899998887554 1 123456666666654 33 222223211 1 11 13
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C----HHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T----REL 186 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t----~~~ 186 (257)
+.+...++++.+.++| ++.|.+.... + ...+......++.+|+.+++||-. ..+ | ...
T Consensus 147 ~~~~~~~~~~~~~~~G------ad~I~i~Dt~----G------~~~P~~v~~lv~~lk~~~~~pi~~-H~Hnt~Gla~An 209 (582)
T TIGR01108 147 TLETYLDLAEELLEMG------VDSICIKDMA----G------ILTPKAAYELVSALKKRFGLPVHL-HSHATTGMAEMA 209 (582)
T ss_pred CHHHHHHHHHHHHHcC------CCEEEECCCC----C------CcCHHHHHHHHHHHHHhCCCceEE-EecCCCCcHHHH
Confidence 5788899999999999 7777765421 1 112333446777889888877543 222 2 556
Q ss_pred HHHHHHcCCCcEEEechHH----hhCchH
Q 025135 187 GIQALAEDGADLVAYGRLF----ISNPDL 211 (257)
Q Consensus 187 a~~~l~~g~~D~V~igR~~----iadP~l 211 (257)
...+++.| ||.|-.+=.- ..||.+
T Consensus 210 ~laAveaG-a~~vd~ai~GlG~~tGn~~l 237 (582)
T TIGR01108 210 LLKAIEAG-ADGIDTAISSMSGGTSHPPT 237 (582)
T ss_pred HHHHHHhC-CCEEEeccccccccccChhH
Confidence 67889988 8877433222 456655
No 409
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=92.76 E-value=3.3 Score=38.68 Aligned_cols=133 Identities=13% Similarity=0.061 Sum_probs=80.4
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDS 110 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~ 110 (257)
.++|.++|+|.|.|-... .--++...++.+.+.-.+.+.+.++.+|+. | +-|.++.. + .. .
T Consensus 81 i~~a~~~g~~~i~i~~~~----------Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~-G---~~v~~~~e-d---~~-r 141 (378)
T PRK11858 81 IDASIDCGVDAVHIFIAT----------SDIHIKHKLKKTREEVLERMVEAVEYAKDH-G---LYVSFSAE-D---AS-R 141 (378)
T ss_pred HHHHHhCCcCEEEEEEcC----------CHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEEec-c---CC-C
Confidence 456778899988875543 122345566777776666677777776653 2 23444532 1 11 1
Q ss_pred CcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCC----HHH
Q 025135 111 DPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT----REL 186 (257)
Q Consensus 111 ~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it----~~~ 186 (257)
.+.+...++++.+.++| ++.|.+.... + ...+......++.+++.+++|+-.=+.-+ ...
T Consensus 142 ~~~~~l~~~~~~~~~~G------a~~I~l~DT~----G------~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN 205 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAG------ADRVRFCDTV----G------ILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATAN 205 (378)
T ss_pred CCHHHHHHHHHHHHhCC------CCEEEEeccC----C------CCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHH
Confidence 35788899999999999 7777665421 1 11233445667778888877753322213 445
Q ss_pred HHHHHHcCCCcEE
Q 025135 187 GIQALAEDGADLV 199 (257)
Q Consensus 187 a~~~l~~g~~D~V 199 (257)
+..+++.| ++.|
T Consensus 206 ~laAv~aG-a~~v 217 (378)
T PRK11858 206 ALAGIEAG-AKQV 217 (378)
T ss_pred HHHHHHcC-CCEE
Confidence 67888887 6655
No 410
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=92.75 E-value=1.3 Score=39.57 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCC
Q 025135 78 LMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGT 157 (257)
Q Consensus 78 ~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~ 157 (257)
+.+.++.+|+..+...|.|-+. +.+++. ...++| +|.|-+..- .
T Consensus 175 i~~av~~~r~~~~~~kIeVEv~------------tleea~----ea~~~G------aDiI~lDn~--------------~ 218 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEAD------------TIEQAL----TVLQAS------PDILQLDKF--------------T 218 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEECC------------CHHHHH----HHHHcC------cCEEEECCC--------------C
Confidence 4577888888776445665553 345443 345688 777766531 1
Q ss_pred chhHHHHHHHHHHH-hCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 158 EDEEAQLLRTWRRS-YQGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 158 ~~~~~~~~~~ir~~-~~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
.......++.+++. .++.+.++|||+++.+.++...| +|++++|-...+-|
T Consensus 219 ~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~G-vD~is~gal~~a~~ 270 (277)
T TIGR01334 219 PQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAG-IDLFITSAPYYAAP 270 (277)
T ss_pred HHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcC-CCEEEeCcceecCc
Confidence 11222333334321 23458889999999999999887 99999997765554
No 411
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=92.73 E-value=7.9 Score=35.52 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=63.0
Q ss_pred CCCCChhhHHHHHHH----------HHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHH
Q 025135 12 PQALQTSEIPEVIDQ----------YRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQL 81 (257)
Q Consensus 12 p~~lt~~eI~~ii~~----------f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~ei 81 (257)
|+.+|..+|.+..+. =.-.|+.+.++|+|.|-+--.-|--..-+ +.++. -+ +.-+...
T Consensus 19 ~~k~ti~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~--~~T~~------Vt----ld~mi~H 86 (332)
T PLN02424 19 AQRVTLRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGH--DTTLP------IT----LDEMLVH 86 (332)
T ss_pred CCCcCHHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCC--CCCCC------cC----HHHHHHH
Confidence 566788888887653 13467888899999998743332211111 22221 12 3346666
Q ss_pred HHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHH-HhcCCccCCceeEEEeeC
Q 025135 82 VREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGL-NKLQIDQGAKLTYLHVTQ 141 (257)
Q Consensus 82 v~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L-~~~G~~~~~~vd~i~v~~ 141 (257)
+++|++.+..-.+...|.. .-| ..+.+++.+-+.+| .+.| ++.|.+..
T Consensus 87 ~~aV~Rga~~a~vVaDmPf-gSY-----~~s~e~av~nA~rl~~eaG------a~aVKlEG 135 (332)
T PLN02424 87 CRAVARGANRPLLVGDLPF-GSY-----ESSTDQAVESAVRMLKEGG------MDAVKLEG 135 (332)
T ss_pred HHHHhccCCCCEEEeCCCC-CCC-----CCCHHHHHHHHHHHHHHhC------CcEEEECC
Confidence 7888877754233335542 112 23567777777777 6688 88888754
No 412
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=92.72 E-value=9 Score=36.13 Aligned_cols=83 Identities=11% Similarity=-0.023 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCC-C-CCchhHHHHHHHHHHHhCCcEEEe--CCC-CHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGR-P-GTEDEEAQLLRTWRRSYQGTFICS--GGF-TREL 186 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ir~~~~~pvi~~--G~i-t~~~ 186 (257)
+.+++.++++.+++.| +|+|++.-...........+. . ..+....+.++.+++.+++||++= -.+ +..+
T Consensus 111 ~~~~~~~~a~~~~~~g------~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~ 184 (420)
T PRK08318 111 NEEEWKEIAPLVEETG------ADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIRE 184 (420)
T ss_pred CHHHHHHHHHHHHhcC------CCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHH
Confidence 3677889999999999 888876422111110000000 0 011223456677888888997752 233 3444
Q ss_pred HHHHHHcCCCcEEE
Q 025135 187 GIQALAEDGADLVA 200 (257)
Q Consensus 187 a~~~l~~g~~D~V~ 200 (257)
..+++++.++|.|.
T Consensus 185 ~a~~~~~~Gadgi~ 198 (420)
T PRK08318 185 PARAAKRGGADAVS 198 (420)
T ss_pred HHHHHHHCCCCEEE
Confidence 44555555699988
No 413
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=92.69 E-value=6.6 Score=34.90 Aligned_cols=147 Identities=12% Similarity=-0.037 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcC-CCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFL-KDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLD 106 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFl-Sp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~ 106 (257)
.-.|+.+.++|||.|-+-.+- ....+ -|.+. .-+ +.-.++.+++|++.++..+|.+.+. +..|.
T Consensus 25 ~~sArl~e~aG~d~i~vGds~---~~~~lG~~Dt~------~vt----l~em~~h~~~V~r~~~~p~vvaD~p-fg~y~- 89 (264)
T PRK00311 25 YPFAKLFDEAGVDVILVGDSL---GMVVLGYDSTL------PVT----LDDMIYHTKAVARGAPRALVVADMP-FGSYQ- 89 (264)
T ss_pred HHHHHHHHHcCCCEEEECHHH---HHHHcCCCCCC------CcC----HHHHHHHHHHHHhcCCCCcEEEeCC-CCCcc-
Confidence 356788899999999642111 00001 02211 112 2345666777777765434666662 22221
Q ss_pred CCCCCcHHHH-HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEE--------
Q 025135 107 ATDSDPLGLG-LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFI-------- 177 (257)
Q Consensus 107 ~~~~~~~~~~-~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi-------- 177 (257)
.+.+++ ....+.++++| ++.+++... ......++.+.+ .++||+
T Consensus 90 ----~~~~~av~~a~r~~~~aG------a~aVkiEdg----------------~~~~~~I~al~~-agIpV~gHiGL~pq 142 (264)
T PRK00311 90 ----ASPEQALRNAGRLMKEAG------AHAVKLEGG----------------EEVAETIKRLVE-RGIPVMGHLGLTPQ 142 (264)
T ss_pred ----CCHHHHHHHHHHHHHHhC------CeEEEEcCc----------------HHHHHHHHHHHH-CCCCEeeeecccce
Confidence 234554 44566666699 888887542 112233333332 367876
Q ss_pred ---EeCCC-----CHH-------HHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCC
Q 025135 178 ---CSGGF-----TRE-------LGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP 220 (257)
Q Consensus 178 ---~~G~i-----t~~-------~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~ 220 (257)
.-|++ |.+ +|..+.+.| ||+|.+==. .+++.+++.+..+
T Consensus 143 ~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAG-A~~i~lE~v---~~~~~~~i~~~l~ 196 (264)
T PRK00311 143 SVNVLGGYKVQGRDEEAAEKLLEDAKALEEAG-AFALVLECV---PAELAKEITEALS 196 (264)
T ss_pred eecccCCeeeecCCHHHHHHHHHHHHHHHHCC-CCEEEEcCC---CHHHHHHHHHhCC
Confidence 23433 222 233344455 998877422 3467778776554
No 414
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=92.69 E-value=2.3 Score=39.58 Aligned_cols=84 Identities=21% Similarity=0.175 Sum_probs=57.6
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhC
Q 025135 11 NPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIG 90 (257)
Q Consensus 11 ~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg 90 (257)
+|.-|+.++. ++.+..+...|.|+|.... .|-+|-++| ++.|.+.+.+.++++.+++|
T Consensus 134 KP~GL~~~~~-------a~~~~~~~~gGvD~IKdDe---~l~~~~~~p------------~~eRv~~v~~av~~a~~eTG 191 (364)
T cd08210 134 KPQGLSAAEL-------AELAYAFALGGIDIIKDDH---GLADQPFAP------------FEERVKACQEAVAEANAETG 191 (364)
T ss_pred ccccCCHHHH-------HHHHHHHHhcCCCeeecCc---cccCccCCC------------HHHHHHHHHHHHHHHHhhcC
Confidence 3455665554 4455555679999996432 233444433 58999999999999999999
Q ss_pred CC-eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcC
Q 025135 91 AD-RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQ 127 (257)
Q Consensus 91 ~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G 127 (257)
.. +..+=++. +.+++.+-++.++++|
T Consensus 192 ~~~~y~~Nita-----------~~~em~~ra~~a~~~G 218 (364)
T cd08210 192 GRTLYAPNVTG-----------PPTQLLERARFAKEAG 218 (364)
T ss_pred CcceEEEecCC-----------CHHHHHHHHHHHHHcC
Confidence 75 44444442 2457888899999999
No 415
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.58 E-value=0.85 Score=44.17 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCC-CHHHHHHHHHc
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGF-TRELGIQALAE 193 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~i-t~~~a~~~l~~ 193 (257)
..+.++.|.++| ++.|++.... + .....++.++++|+.+ +.+|++ |.+ |++++..+++.
T Consensus 242 ~~~~~~~l~~ag------~d~i~id~a~----G--------~s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~a 302 (495)
T PTZ00314 242 DIERAAALIEAG------VDVLVVDSSQ----G--------NSIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDA 302 (495)
T ss_pred HHHHHHHHHHCC------CCEEEEecCC----C--------CchHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHc
Confidence 467888999999 8888875421 0 1122346788899886 466666 666 99999999999
Q ss_pred CCCcEEEec
Q 025135 194 DGADLVAYG 202 (257)
Q Consensus 194 g~~D~V~ig 202 (257)
| +|+|-+|
T Consensus 303 G-ad~I~vg 310 (495)
T PTZ00314 303 G-ADGLRIG 310 (495)
T ss_pred C-CCEEEEC
Confidence 8 9999643
No 416
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=92.51 E-value=1.8 Score=40.24 Aligned_cols=78 Identities=17% Similarity=0.063 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAI 102 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~ 102 (257)
.+.+++.+....+.|.|+|...... -+|.++ +++.|.+.+.+.++.+.+++|.. .+..=++.
T Consensus 145 ~~~la~~~~~l~~gGvD~Ikdde~~---ge~~~~------------~~eER~~~v~~av~~a~~~TG~~~~y~~nit~-- 207 (367)
T cd08205 145 PEELAELAYELALGGIDLIKDDELL---ADQPYA------------PFEERVRACMEAVRRANEETGRKTLYAPNITG-- 207 (367)
T ss_pred HHHHHHHHHHHHhcCCCeeeccccc---cCcccC------------CHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC--
Confidence 3445555556677999999865433 233332 45899999999999999999975 34444432
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQ 127 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G 127 (257)
+.+++++.++.++++|
T Consensus 208 ---------~~~e~i~~a~~a~~~G 223 (367)
T cd08205 208 ---------DPDELRRRADRAVEAG 223 (367)
T ss_pred ---------CHHHHHHHHHHHHHcC
Confidence 2478899999999999
No 417
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=92.49 E-value=1.3 Score=40.37 Aligned_cols=91 Identities=19% Similarity=0.334 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHH
Q 025135 1 MPDGSYATYPNPQALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQ 80 (257)
Q Consensus 1 ~~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~e 80 (257)
||+|+..-.+.-..||.|||..+++.|+ +.|.+-|.|-+|- |.. |. .+.+
T Consensus 29 m~eg~~~~~~~~~~Ls~eei~~~~~~~~-------~~Gv~kvRlTGGE---------Pll--R~------------dl~e 78 (322)
T COG2896 29 MPEGPLAFLPKEELLSLEEIRRLVRAFA-------ELGVEKVRLTGGE---------PLL--RK------------DLDE 78 (322)
T ss_pred CCCCCcccCcccccCCHHHHHHHHHHHH-------HcCcceEEEeCCC---------chh--hc------------CHHH
Confidence 8899444233335899999999988663 4789999998887 653 33 4788
Q ss_pred HHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeC
Q 025135 81 LVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ 141 (257)
Q Consensus 81 iv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~ 141 (257)
||+.+.+. +...|.+--|+. .....++.|.++| ++=|++|-
T Consensus 79 Ii~~l~~~-~~~~islTTNG~-------------~L~~~a~~Lk~AG------l~rVNVSL 119 (322)
T COG2896 79 IIARLARL-GIRDLSLTTNGV-------------LLARRAADLKEAG------LDRVNVSL 119 (322)
T ss_pred HHHHHhhc-ccceEEEecchh-------------hHHHHHHHHHHcC------CcEEEeec
Confidence 89888876 433455444421 2346788999999 77787764
No 418
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=92.46 E-value=2.2 Score=36.04 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEE-EEccCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGV-RMSPAIDHLD 106 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~v-rls~~~~~~~ 106 (257)
++-|+-|++.|.-||-+++. +=|++||+.+.-..||+ |- +|.+
T Consensus 2 ~~mA~Aa~~gGA~giR~~~~--------------------------------~dI~aik~~v~lPIIGi~K~----~y~~ 45 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANGV--------------------------------EDIRAIKKAVDLPIIGIIKR----DYPD 45 (192)
T ss_dssp HHHHHHHHHCT-SEEEEESH--------------------------------HHHHHHHTTB-S-EEEE-B-----SBTT
T ss_pred HHHHHHHHHCCceEEEcCCH--------------------------------HHHHHHHHhcCCCEEEEEec----cCCC
Confidence 45677778899999997632 33888999984323665 32 2222
Q ss_pred CCC--CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C
Q 025135 107 ATD--SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T 183 (257)
Q Consensus 107 ~~~--~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t 183 (257)
..- .-+.+ =++.|.++| ++.|-+...... .+ ....+++..+|+.. ..++ ..+ |
T Consensus 46 ~~V~ITPT~~----ev~~l~~aG------adIIAlDaT~R~----------Rp-~~l~~li~~i~~~~-~l~M--ADist 101 (192)
T PF04131_consen 46 SDVYITPTLK----EVDALAEAG------ADIIALDATDRP----------RP-ETLEELIREIKEKY-QLVM--ADIST 101 (192)
T ss_dssp SS--BS-SHH----HHHHHHHCT-------SEEEEE-SSSS-----------S-S-HHHHHHHHHHCT-SEEE--EE-SS
T ss_pred CCeEECCCHH----HHHHHHHcC------CCEEEEecCCCC----------CC-cCHHHHHHHHHHhC-cEEe--eecCC
Confidence 211 11233 356677899 555544321111 11 23456778899887 4444 467 8
Q ss_pred HHHHHHHHHcCCCcEEEec
Q 025135 184 RELGIQALAEDGADLVAYG 202 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~ig 202 (257)
.+++..+.+.| +|+|+--
T Consensus 102 ~ee~~~A~~~G-~D~I~TT 119 (192)
T PF04131_consen 102 LEEAINAAELG-FDIIGTT 119 (192)
T ss_dssp HHHHHHHHHTT--SEEE-T
T ss_pred HHHHHHHHHcC-CCEEEcc
Confidence 99999999998 9999864
No 419
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=92.46 E-value=3.2 Score=38.47 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=77.5
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCC
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDS 110 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~ 110 (257)
.++|.++|.|.|.|..+. |+ .++...++-+.+.-.+.+.+.|+.+|+. | +.+.++.. +. . .
T Consensus 78 i~~a~~~g~~~i~i~~~~--------Sd--~~~~~~~~~s~~e~l~~~~~~i~~ak~~-g---~~v~~~~e-d~---~-r 138 (365)
T TIGR02660 78 IEAAARCGVDAVHISIPV--------SD--LQIEAKLRKDRAWVLERLARLVSFARDR-G---LFVSVGGE-DA---S-R 138 (365)
T ss_pred HHHHHcCCcCEEEEEEcc--------CH--HHHHHHhCcCHHHHHHHHHHHHHHHHhC-C---CEEEEeec-CC---C-C
Confidence 346678899988876543 11 1233344555454455556666665543 3 23555542 21 1 1
Q ss_pred CcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C----HH
Q 025135 111 DPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T----RE 185 (257)
Q Consensus 111 ~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t----~~ 185 (257)
.+.+...++++.+.++| ++.|.+.... + ...+......++.+++.+++||- .... | ..
T Consensus 139 ~~~~~l~~~~~~~~~~G------a~~i~l~DT~----G------~~~P~~v~~lv~~l~~~~~v~l~-~H~HNd~GlA~A 201 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAG------ADRFRFADTV----G------ILDPFSTYELVRALRQAVDLPLE-MHAHNDLGMATA 201 (365)
T ss_pred CCHHHHHHHHHHHHHcC------cCEEEEcccC----C------CCCHHHHHHHHHHHHHhcCCeEE-EEecCCCChHHH
Confidence 35788899999999999 7777765421 1 11233445667778888777653 3332 3 45
Q ss_pred HHHHHHHcCCCcEEE
Q 025135 186 LGIQALAEDGADLVA 200 (257)
Q Consensus 186 ~a~~~l~~g~~D~V~ 200 (257)
.+..+++.| ||.|-
T Consensus 202 NalaA~~aG-a~~vd 215 (365)
T TIGR02660 202 NTLAAVRAG-ATHVN 215 (365)
T ss_pred HHHHHHHhC-CCEEE
Confidence 567888887 66553
No 420
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.44 E-value=0.18 Score=42.09 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=44.5
Q ss_pred HHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 025135 119 VIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDGAD 197 (257)
Q Consensus 119 l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~~D 197 (257)
-.+.+++.. .|++++-.+ .....++++++.+++|||++|=+ |.++.+++|+.| ++
T Consensus 109 ~~~~i~~~~------PD~vEilPg-----------------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aG-a~ 164 (175)
T PF04309_consen 109 GIKQIEQSK------PDAVEILPG-----------------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAG-AD 164 (175)
T ss_dssp HHHHHHHHT-------SEEEEESC-----------------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTT-CE
T ss_pred HHHHHhhcC------CCEEEEchH-----------------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcC-CE
Confidence 455566666 888887532 12345667888889999998888 899999999998 99
Q ss_pred EEEechHHh
Q 025135 198 LVAYGRLFI 206 (257)
Q Consensus 198 ~V~igR~~i 206 (257)
.|+-...-+
T Consensus 165 aVSTS~~~L 173 (175)
T PF04309_consen 165 AVSTSNKEL 173 (175)
T ss_dssp EEEE--HHH
T ss_pred EEEcCChHh
Confidence 998776544
No 421
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.39 E-value=1.4 Score=37.37 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=34.8
Q ss_pred HHHHHHHHHhC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 163 QLLRTWRRSYQ-GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 163 ~~~~~ir~~~~-~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
.+++.++..++ ++++.+||++++.+.+.++.| +.+|++|..+....
T Consensus 137 ~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag-~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 137 SYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAG-AVAVGGGSWLFPKD 183 (196)
T ss_dssp HHHHHHHTTTTT-EEEEBSS--TTTHHHHHTST-TBSEEEESGGGSHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCC-CEEEEECchhcCHH
Confidence 45666776654 679999999999999999998 88999998876543
No 422
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=92.35 E-value=5.1 Score=35.65 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHLDA 107 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~~~ 107 (257)
+..++|.++|.|.|.|-.+. |+ .+++...+-+.+.-...+.+.++..|+. |.. .+.+-.+....+.
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~--------Sd--~~~~~~~~~s~~~~~~~~~~~v~~ak~~-G~~v~~~i~~~f~~~~~-- 143 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSA--------SE--TFSQKNINCSIAESLERFEPVAELAKAA-GLRVRGYVSTAFGCPYE-- 143 (274)
T ss_pred HHHHHHHHcCcCEEEEEEec--------CH--HHHHHHcCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeEecCCCC--
Confidence 44678889999998876543 11 1233344555566666677777777765 322 1222211100111
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCCC---
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGFT--- 183 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~it--- 183 (257)
...+.+...++++.+.+.| ++.|.+.... + ...+......++.+++.++ +|+-.=+.-|
T Consensus 144 -~~~~~~~~~~~~~~~~~~G------a~~i~l~DT~----G------~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~Gl 206 (274)
T cd07938 144 -GEVPPERVAEVAERLLDLG------CDEISLGDTI----G------VATPAQVRRLLEAVLERFPDEKLALHFHDTRGQ 206 (274)
T ss_pred -CCCCHHHHHHHHHHHHHcC------CCEEEECCCC----C------ccCHHHHHHHHHHHHHHCCCCeEEEEECCCCCh
Confidence 1235788899999999999 7777765421 1 1123344466777888874 5544322212
Q ss_pred -HHHHHHHHHcCCCcEEE
Q 025135 184 -RELGIQALAEDGADLVA 200 (257)
Q Consensus 184 -~~~a~~~l~~g~~D~V~ 200 (257)
...+..+++.| +|.|-
T Consensus 207 A~AN~laA~~aG-a~~id 223 (274)
T cd07938 207 ALANILAALEAG-VRRFD 223 (274)
T ss_pred HHHHHHHHHHhC-CCEEE
Confidence 55677889988 67664
No 423
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=92.13 E-value=5.4 Score=36.95 Aligned_cols=122 Identities=12% Similarity=0.030 Sum_probs=69.0
Q ss_pred chhhHhhHHHHHHHHHHHHhCCC---eEEEEEccCCCCCCCC------CCCcHHHHHHHHHHHH-hcCCccCCceeEEEe
Q 025135 70 SIENRCRFLMQLVREVIVAIGAD---RVGVRMSPAIDHLDAT------DSDPLGLGLAVIQGLN-KLQIDQGAKLTYLHV 139 (257)
Q Consensus 70 s~enR~r~~~eiv~aiR~~vg~~---~v~vrls~~~~~~~~~------~~~~~~~~~~l~~~L~-~~G~~~~~~vd~i~v 139 (257)
++|...++..|+++-... .|-. -|| ++...++..... ...+.+++.+|++... ..| +|.+.+
T Consensus 147 pfeENI~~TrevVe~Ah~-~GvsVEaELG-~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~Tg------vD~LAv 218 (357)
T TIGR01520 147 PIEENIEICVKYLKRMAK-IKMWLEIEIG-ITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISP------NFSIAA 218 (357)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCEEEEEec-ccCCccCCcccccccccccCCCHHHHHHHHHHhccCCC------cceeee
Confidence 378889999999988664 3321 133 333222211000 1245677887777653 236 788776
Q ss_pred eCCCcccCCCcCCCCCCCchhHHHHHHHH----HHHhCCc------EEEeCC--CCHHHHHHHHHcCCCcEEEechHH
Q 025135 140 TQPRYTAYGQTESGRPGTEDEEAQLLRTW----RRSYQGT------FICSGG--FTRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----r~~~~~p------vi~~G~--it~~~a~~~l~~g~~D~V~igR~~ 205 (257)
+-++.++.+. ++ .+....+.+++| ++.+++| +++=|+ +..++..++++.| +-=|=++.-+
T Consensus 219 AiGT~HG~Yk--~~---~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~G-I~KINi~Tdl 290 (357)
T TIGR01520 219 AFGNVHGVYK--PG---NVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYG-VVKMNIDTDT 290 (357)
T ss_pred eeccccCCcC--CC---CCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCC-CeEEEeCcHH
Confidence 6554443321 01 112234566777 4566777 776665 4678999999998 4445555444
No 424
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=92.11 E-value=7.8 Score=34.04 Aligned_cols=145 Identities=18% Similarity=0.095 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCC
Q 025135 26 QYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHL 105 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~ 105 (257)
++.+.++.+...|.|.||+-. |-+.. +. ....+.+++..+|+..+.-||.+-++.. .+
T Consensus 29 e~~~~~~~~~~~~aD~vElRl------------------D~l~~-~~-~~~~~~~~~~~l~~~~~~~PiI~T~R~~--~e 86 (253)
T PRK02412 29 EVLAEALAISKYDADIIEWRA------------------DFLEK-IS-DVESVLAAAPAIREKFAGKPLLFTFRTA--KE 86 (253)
T ss_pred HHHHHHHHHhhcCCCEEEEEe------------------chhhc-cC-CHHHHHHHHHHHHHhcCCCcEEEEECCh--hh
Confidence 334445556667999999743 33321 01 1235678888999887654655555432 12
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeC-CC--
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSG-GF-- 182 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G-~i-- 182 (257)
++....+.+...++.+.+.+.|. ++||++.-.. ............+ .-+..||++- .+
T Consensus 87 GG~~~~~~~~~~~ll~~~~~~~~-----~d~vDiEl~~-------------~~~~~~~l~~~~~-~~~~kvI~S~H~f~~ 147 (253)
T PRK02412 87 GGEIALSDEEYLALIKAVIKSGL-----PDYIDVELFS-------------GKDVVKEMVAFAH-EHGVKVVLSYHDFEK 147 (253)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCC-----CCEEEEeccC-------------ChHHHHHHHHHHH-HcCCEEEEeeCCCCC
Confidence 22222345566677777777773 6888874310 0111112222222 3356777774 44
Q ss_pred CH--HHHHHHHH---cCCCcEEEechHHhhCchH
Q 025135 183 TR--ELGIQALA---EDGADLVAYGRLFISNPDL 211 (257)
Q Consensus 183 t~--~~a~~~l~---~g~~D~V~igR~~iadP~l 211 (257)
|| ++..+.++ +-+||+|=++...-...|.
T Consensus 148 tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~ 181 (253)
T PRK02412 148 TPPKEEIVERLRKMESLGADIVKIAVMPQSEQDV 181 (253)
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Confidence 55 44333332 2248988887765544444
No 425
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.09 E-value=2.5 Score=38.04 Aligned_cols=111 Identities=15% Similarity=0.060 Sum_probs=64.3
Q ss_pred cCCcCCCCCCc--hhhHhhHH---HHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCce
Q 025135 60 INDRTDEYGGS--IENRCRFL---MQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKL 134 (257)
Q Consensus 60 ~N~R~D~yGGs--~enR~r~~---~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~v 134 (257)
.|+|-+-+-+- .+|-..+. .+.++.+|+..+..+|.|-.. +.+++.+ ..++| +
T Consensus 163 ~~HR~gLsd~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~------------tl~ea~e----al~~g------a 220 (289)
T PRK07896 163 VNHRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVD------------SLEQLDE----VLAEG------A 220 (289)
T ss_pred ccccCCCcceeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcC------------CHHHHHH----HHHcC------C
Confidence 35555544332 34544554 456667777665435555443 3444433 34678 7
Q ss_pred eEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhh
Q 025135 135 TYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGFTRELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 135 d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~ia 207 (257)
|.|-+..- ........+..+++.. ++.+.++||||++...++.+.| +|++++|....+
T Consensus 221 DiI~LDnm--------------~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tG-vD~Is~galt~s 279 (289)
T PRK07896 221 ELVLLDNF--------------PVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETG-VDYLAVGALTHS 279 (289)
T ss_pred CEEEeCCC--------------CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcC-CCEEEeChhhcC
Confidence 77765321 1111122223233222 3458899999999999998887 999999987763
No 426
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.07 E-value=1 Score=42.48 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC-CHHHHHHHHHc
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF-TRELGIQALAE 193 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i-t~~~a~~~l~~ 193 (257)
..+.++.|.++| +|+|.+....- ......+.++.+|+.++ .+|++ |++ |+++|..+++.
T Consensus 154 ~~~~v~~lv~aG------vDvI~iD~a~g------------~~~~~~~~v~~ik~~~p~~~vi~-g~V~T~e~a~~l~~a 214 (404)
T PRK06843 154 TIERVEELVKAH------VDILVIDSAHG------------HSTRIIELVKKIKTKYPNLDLIA-GNIVTKEAALDLISV 214 (404)
T ss_pred HHHHHHHHHhcC------CCEEEEECCCC------------CChhHHHHHHHHHhhCCCCcEEE-EecCCHHHHHHHHHc
Confidence 567788899999 77776533210 11123467788998874 55555 555 99999999999
Q ss_pred CCCcEEEec
Q 025135 194 DGADLVAYG 202 (257)
Q Consensus 194 g~~D~V~ig 202 (257)
| +|+|.+|
T Consensus 215 G-aD~I~vG 222 (404)
T PRK06843 215 G-ADCLKVG 222 (404)
T ss_pred C-CCEEEEC
Confidence 8 9998766
No 427
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.05 E-value=0.94 Score=43.70 Aligned_cols=70 Identities=23% Similarity=0.170 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHc
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAE 193 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~ 193 (257)
+..++++.|.+.| ++.|.+....- ......+.++.||+.++.-.+..|++ |.+.++.+++.
T Consensus 227 ~~~~~a~~Lv~aG------vd~i~~D~a~~------------~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~a 288 (479)
T PRK07807 227 DVAAKARALLEAG------VDVLVVDTAHG------------HQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEA 288 (479)
T ss_pred hHHHHHHHHHHhC------CCEEEEeccCC------------ccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHc
Confidence 3457788888888 66655432110 11234567888999885334445787 99999999999
Q ss_pred CCCcEEEech
Q 025135 194 DGADLVAYGR 203 (257)
Q Consensus 194 g~~D~V~igR 203 (257)
| +|+|.+|=
T Consensus 289 G-ad~v~vgi 297 (479)
T PRK07807 289 G-ADIVKVGV 297 (479)
T ss_pred C-CCEEEECc
Confidence 8 99987443
No 428
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=91.95 E-value=3.1 Score=38.38 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 025135 162 AQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 162 ~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~ig 202 (257)
++.++.+++.++.||++-|-.++++|..+.+.| +|.|.+.
T Consensus 202 ~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~vs 241 (344)
T cd02922 202 WDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYG-VDGIVLS 241 (344)
T ss_pred HHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcC-CCEEEEE
Confidence 456788999999999887655899999998887 9988754
No 429
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=91.90 E-value=4.8 Score=35.35 Aligned_cols=133 Identities=15% Similarity=0.071 Sum_probs=76.6
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATD 109 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~ 109 (257)
..++|.++|+|.|.+.... |+. +....++-+.+.=.+.+.+.++.+|+. | +-++++.. + . .
T Consensus 74 ~v~~a~~~g~~~i~i~~~~--------s~~--~~~~~~~~~~~~~~~~~~~~i~~a~~~-G---~~v~~~~~-~---~-~ 134 (259)
T cd07939 74 DIEAALRCGVTAVHISIPV--------SDI--HLAHKLGKDRAWVLDQLRRLVGRAKDR-G---LFVSVGAE-D---A-S 134 (259)
T ss_pred HHHHHHhCCcCEEEEEEec--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEeec-c---C-C
Confidence 3456778899998886543 111 112233444444445556666666653 3 23445532 1 1 1
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C----H
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T----R 184 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t----~ 184 (257)
..+.+...++++.+.+.| ++.|.+.... + ...+......+..+++.+++|+- .... | .
T Consensus 135 ~~~~~~~~~~~~~~~~~G------~~~i~l~DT~----G------~~~P~~v~~lv~~l~~~~~~~l~-~H~Hn~~Gla~ 197 (259)
T cd07939 135 RADPDFLIEFAEVAQEAG------ADRLRFADTV----G------ILDPFTTYELIRRLRAATDLPLE-FHAHNDLGLAT 197 (259)
T ss_pred CCCHHHHHHHHHHHHHCC------CCEEEeCCCC----C------CCCHHHHHHHHHHHHHhcCCeEE-EEecCCCChHH
Confidence 135788899999999999 7777664421 1 11233344567778888876643 3333 3 4
Q ss_pred HHHHHHHHcCCCcEE
Q 025135 185 ELGIQALAEDGADLV 199 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V 199 (257)
..+..+++.| ||.|
T Consensus 198 An~laAi~aG-~~~v 211 (259)
T cd07939 198 ANTLAAVRAG-ATHV 211 (259)
T ss_pred HHHHHHHHhC-CCEE
Confidence 5667889888 6655
No 430
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=91.88 E-value=0.89 Score=43.46 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCCCHHHHHHHHHc
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGFTRELGIQALAE 193 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~it~~~a~~~l~~ 193 (257)
...+-++.|.++| ++.|++....- ......+.++.+|+.+ ++||++.+..|++++..+++.
T Consensus 224 ~~~~r~~~L~~aG------~d~I~vd~a~g------------~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a 285 (450)
T TIGR01302 224 FDKERAEALVKAG------VDVIVIDSSHG------------HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA 285 (450)
T ss_pred hHHHHHHHHHHhC------CCEEEEECCCC------------cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh
Confidence 3455677888899 78887653210 1123456788898885 678888444499999999999
Q ss_pred CCCcEEEec
Q 025135 194 DGADLVAYG 202 (257)
Q Consensus 194 g~~D~V~ig 202 (257)
| +|+|-+|
T Consensus 286 G-ad~i~vg 293 (450)
T TIGR01302 286 G-ADGLRVG 293 (450)
T ss_pred C-CCEEEEC
Confidence 8 9998644
No 431
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=91.79 E-value=4.7 Score=36.08 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=76.5
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATD 109 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~ 109 (257)
.+.+|.++|++.|.|-.+. |+. +.+...+-+.+.=...+.++++..|+. | +-++++.. ++... .
T Consensus 79 ~~~~A~~~g~~~i~i~~~~--------S~~--h~~~~~~~t~~e~l~~~~~~i~~a~~~-G---~~v~~~~~-d~~~~-~ 142 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKG--------SLK--HCTEQLRKTPEEHFADIREVIEYAIKN-G---IEVNIYLE-DWSNG-M 142 (280)
T ss_pred HHHHHHHCCCCEEEEEEeC--------CHH--HHHHHHCcCHHHHHHHHHHHHHHHHhC-C---CEEEEEEE-eCCCC-C
Confidence 4677888999998886644 121 222233334444444455555555543 3 23444432 22211 1
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC-C----
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF-T---- 183 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i-t---- 183 (257)
..+.+...++++.+.+.| ++.|.+.... + ...+......++.+++.++ +|+ ..... |
T Consensus 143 r~~~~~~~~~~~~~~~~G------~~~i~l~DT~----G------~~~P~~v~~l~~~l~~~~~~~~i-~~H~Hnd~Gla 205 (280)
T cd07945 143 RDSPDYVFQLVDFLSDLP------IKRIMLPDTL----G------ILSPFETYTYISDMVKRYPNLHF-DFHAHNDYDLA 205 (280)
T ss_pred cCCHHHHHHHHHHHHHcC------CCEEEecCCC----C------CCCHHHHHHHHHHHHhhCCCCeE-EEEeCCCCCHH
Confidence 235788899999999999 7777665421 1 1122334456677887764 444 33333 3
Q ss_pred HHHHHHHHHcCCCcEEE
Q 025135 184 RELGIQALAEDGADLVA 200 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~ 200 (257)
...+..+++.| +|.|-
T Consensus 206 ~AN~laA~~aG-a~~vd 221 (280)
T cd07945 206 VANVLAAVKAG-IKGLH 221 (280)
T ss_pred HHHHHHHHHhC-CCEEE
Confidence 45667889888 77654
No 432
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=91.77 E-value=1.5 Score=37.54 Aligned_cols=139 Identities=16% Similarity=0.077 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCC
Q 025135 27 YRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLD 106 (257)
Q Consensus 27 f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~ 106 (257)
....+..+...|.|.|||..-+ +.. .-...+.+.+..+|+.+ ..||.+-++.. .++
T Consensus 12 ~~~~~~~~~~~~~D~vElRlD~------------------l~~---~~~~~~~~~l~~lr~~~-~~piI~T~R~~--~eG 67 (224)
T PF01487_consen 12 LLAELEEAESSGADAVELRLDY------------------LEN---DSAEDISEQLAELRRSL-DLPIIFTVRTK--EEG 67 (224)
T ss_dssp HHHHHHHHHHTTTSEEEEEGGG------------------STT---TSHHHHHHHHHHHHHHC-TSEEEEE--BG--GGT
T ss_pred HHHHHHHHHhcCCCEEEEEecc------------------ccc---cChHHHHHHHHHHHHhC-CCCEEEEeccc--ccC
Confidence 3344445555699999986543 222 11346778899999988 34655544421 112
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC-C--C
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG-F--T 183 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~-i--t 183 (257)
+....+.+...++.+.+.+.| ++||++.-.. ....... ......-+..||++-. + |
T Consensus 68 G~~~~~~~~~~~ll~~~~~~~------~d~iDiE~~~--------------~~~~~~~-~~~~~~~~~~iI~S~H~f~~t 126 (224)
T PF01487_consen 68 GRFQGSEEEYLELLERAIRLG------PDYIDIELDL--------------FPDDLKS-RLAARKGGTKIILSYHDFEKT 126 (224)
T ss_dssp SSBSS-HHHHHHHHHHHHHHT------SSEEEEEGGC--------------CHHHHHH-HHHHHHTTSEEEEEEEESS--
T ss_pred CCCcCCHHHHHHHHHHHHHcC------CCEEEEEccc--------------chhHHHH-HHHHhhCCCeEEEEeccCCCC
Confidence 212234677788999999998 8999985311 1111111 2233445667877743 4 3
Q ss_pred H--HHH----HHHHHcCCCcEEEechHHhhCchH
Q 025135 184 R--ELG----IQALAEDGADLVAYGRLFISNPDL 211 (257)
Q Consensus 184 ~--~~a----~~~l~~g~~D~V~igR~~iadP~l 211 (257)
| ++. +++. +-+||+|=++...-...|.
T Consensus 127 p~~~~l~~~~~~~~-~~gadivKia~~~~~~~D~ 159 (224)
T PF01487_consen 127 PSWEELIELLEEMQ-ELGADIVKIAVMANSPEDV 159 (224)
T ss_dssp -THHHHHHHHHHHH-HTT-SEEEEEEE-SSHHHH
T ss_pred CCHHHHHHHHHHHH-hcCCCeEEEEeccCCHHHH
Confidence 3 223 2333 3458988777665444443
No 433
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=91.76 E-value=8.8 Score=33.90 Aligned_cols=147 Identities=16% Similarity=0.022 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcC-CCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFL-KDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLD 106 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFl-Sp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~ 106 (257)
+-.|+.+.++|||.|-+-.+ +....+ -|.+. .-+ +.-.++.+++|++.++...|.+-+. +..|.
T Consensus 22 ~~sA~l~e~aG~d~i~vGds---~~~~~lG~pDt~------~vt----l~em~~~~~~V~r~~~~p~viaD~~-fg~y~- 86 (254)
T cd06557 22 YPTAKLADEAGVDVILVGDS---LGMVVLGYDSTL------PVT----LDEMIYHTRAVRRGAPRALVVADMP-FGSYQ- 86 (254)
T ss_pred HHHHHHHHHcCCCEEEECHH---HHHHHcCCCCCC------CcC----HHHHHHHHHHHHhcCCCCeEEEeCC-CCccc-
Confidence 34678888999999963111 110001 02211 112 2345666777777775422666552 22222
Q ss_pred CCCCCcHHHHHHH-HHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEE--------
Q 025135 107 ATDSDPLGLGLAV-IQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFI-------- 177 (257)
Q Consensus 107 ~~~~~~~~~~~~l-~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi-------- 177 (257)
++.+++.+- .+.++++| ++.+++... ......++.+++ .++||+
T Consensus 87 ----~~~~~av~~a~r~~~~aG------a~aVkiEd~----------------~~~~~~I~al~~-agipV~gHiGL~pq 139 (254)
T cd06557 87 ----TSPEQALRNAARLMKEAG------ADAVKLEGG----------------AEVAETIRALVD-AGIPVMGHIGLTPQ 139 (254)
T ss_pred ----CCHHHHHHHHHHHHHHhC------CeEEEEcCc----------------HHHHHHHHHHHH-cCCCeeccccccce
Confidence 335665554 55556699 888988542 112223333332 357766
Q ss_pred ---EeCCC-----CH-------HHHHHHHHcCCCcEEEechHHhhCchHHHHHHcCCC
Q 025135 178 ---CSGGF-----TR-------ELGIQALAEDGADLVAYGRLFISNPDLVLRFKLNAP 220 (257)
Q Consensus 178 ---~~G~i-----t~-------~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~~ 220 (257)
.-|++ |. +++..+.+.| ||.|.+==. ..++.+++.+..+
T Consensus 140 ~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AG-A~~i~lE~v---~~~~~~~i~~~v~ 193 (254)
T cd06557 140 SVNQLGGYKVQGKTEEEAERLLEDALALEEAG-AFALVLECV---PAELAKEITEALS 193 (254)
T ss_pred eeeccCCceeccCCHHHHHHHHHHHHHHHHCC-CCEEEEcCC---CHHHHHHHHHhCC
Confidence 33443 23 2334444555 998877322 2357777776654
No 434
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=91.74 E-value=3.1 Score=36.95 Aligned_cols=143 Identities=18% Similarity=0.176 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCEEEecc-------cccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccC
Q 025135 29 QAALNAIQAGFDGIEIHG-------AHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPA 101 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~-------a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~ 101 (257)
-.|+.+.+.|.|.|-+.. |.|.|.+-+ | || |=-.+++|..+.|--.+.+.||..=+...
T Consensus 26 lsAk~ae~gGaDlI~~ynsGrfR~~G~~Slagll--p--------yg----naN~iv~em~~eiLp~v~~tPViaGv~at 91 (268)
T PF09370_consen 26 LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLL--P--------YG----NANEIVMEMAREILPVVKDTPVIAGVCAT 91 (268)
T ss_dssp HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGB--T--------EE----EHHHHHHHHHHHHGGG-SSS-EEEEE-TT
T ss_pred hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhh--c--------cc----CHhHHHHHHHHhhhhhccCCCEEEEecCc
Confidence 468888999999998853 344433322 3 33 22345666666666666656888777764
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCC-Cc---CC-CCCCCchhHHHHHHHHHHHhCCcE
Q 025135 102 IDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYG-QT---ES-GRPGTEDEEAQLLRTWRRSYQGTF 176 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~-~~---~~-~~~~~~~~~~~~~~~ir~~~~~pv 176 (257)
+|..+...+.+.|.+.| ..-|.= -|+..... .+ +. .+. +... -+.-|+++...-+
T Consensus 92 ---------DP~~~~~~fl~~lk~~G------f~GV~N-fPTvgliDG~fR~~LEe~Gm-gy~~---EVemi~~A~~~gl 151 (268)
T PF09370_consen 92 ---------DPFRDMDRFLDELKELG------FSGVQN-FPTVGLIDGQFRQNLEETGM-GYDR---EVEMIRKAHEKGL 151 (268)
T ss_dssp ----------TT--HHHHHHHHHHHT-------SEEEE--S-GGG--HHHHHHHHHTT---HHH---HHHHHHHHHHTT-
T ss_pred ---------CCCCcHHHHHHHHHHhC------CceEEE-CCcceeeccHHHHHHHhcCC-CHHH---HHHHHHHHHHCCC
Confidence 34556677889999998 443320 02211000 00 00 000 0111 1233555444444
Q ss_pred EEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 025135 177 ICSGGF-TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 177 i~~G~i-t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+..+-. ++++|+++.+.| +|.+.+==++.
T Consensus 152 ~T~~yvf~~e~A~~M~~AG-aDiiv~H~GlT 181 (268)
T PF09370_consen 152 FTTAYVFNEEQARAMAEAG-ADIIVAHMGLT 181 (268)
T ss_dssp EE--EE-SHHHHHHHHHHT--SEEEEE-SS-
T ss_pred eeeeeecCHHHHHHHHHcC-CCEEEecCCcc
Confidence 444443 899999999998 99987654443
No 435
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.71 E-value=4.3 Score=35.25 Aligned_cols=140 Identities=18% Similarity=0.148 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC
Q 025135 28 RQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA 107 (257)
Q Consensus 28 ~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~ 107 (257)
.+.++++.++|+|.|.|...--- .++. -+++-+.+.....+.+.++.+++. |- .+.+=+.. -+. +
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~-~~~~---------~~~~~~~~~~~~~~~~~i~~a~~~-G~-~v~~~~~~--~~~-~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE-THSR---------KNLNKSREEDLENAEEAIEAAKEA-GL-EVEGSLED--AFG-C 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH-HHHH---------HHhCCCHHHHHHHHHHHHHHHHHC-CC-eEEEEEEe--ecC-C
Confidence 55578888999999998764311 1111 123333444555566666666653 32 22222211 110 0
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC-C--
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF-T-- 183 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i-t-- 183 (257)
..+.+...++++.+.+.| ++.|.+... . + ...+......++.+++.++ +|+-. ... +
T Consensus 142 --~~~~~~l~~~~~~~~~~g------~~~i~l~Dt-~---G------~~~P~~v~~li~~l~~~~~~~~~~~-H~Hn~~g 202 (265)
T cd03174 142 --KTDPEYVLEVAKALEEAG------ADEISLKDT-V---G------LATPEEVAELVKALREALPDVPLGL-HTHNTLG 202 (265)
T ss_pred --CCCHHHHHHHHHHHHHcC------CCEEEechh-c---C------CcCHHHHHHHHHHHHHhCCCCeEEE-EeCCCCC
Confidence 135677888999999999 777776432 1 1 0123344566778888887 55433 322 3
Q ss_pred --HHHHHHHHHcCCCcEEEec
Q 025135 184 --RELGIQALAEDGADLVAYG 202 (257)
Q Consensus 184 --~~~a~~~l~~g~~D~V~ig 202 (257)
...+..+++.| |+.|-.+
T Consensus 203 la~an~laA~~aG-~~~id~s 222 (265)
T cd03174 203 LAVANSLAALEAG-ADRVDGS 222 (265)
T ss_pred hHHHHHHHHHHcC-CCEEEec
Confidence 56677889888 7766433
No 436
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=91.68 E-value=2.4 Score=39.18 Aligned_cols=108 Identities=6% Similarity=-0.028 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCC
Q 025135 78 LMQLVREVIVAIGADRVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGT 157 (257)
Q Consensus 78 ~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~ 157 (257)
..+-++.+|+..++.|+.+=|.... . . ..+.+...+. ++..+ .+++.++-....... .......
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~-~--~--~~~~~~~~~~---~~~~~------adal~l~l~~~qe~~--~p~g~~~ 170 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQ-L--Y--GYGVEEAQRA---VEMIE------ADALQIHLNPLQELV--QPEGDRD 170 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccc-c--C--CCCHHHHHHH---HHhcC------CCcEEEeCccchhhc--CCCCccc
Confidence 4455677777766557766665421 0 0 1234444443 34444 444544422111100 0001111
Q ss_pred chhHHHHHHHHHHHhCCcEEE--eC-CCCHHHHHHHHHcCCCcEEEec
Q 025135 158 EDEEAQLLRTWRRSYQGTFIC--SG-GFTRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 158 ~~~~~~~~~~ir~~~~~pvi~--~G-~it~~~a~~~l~~g~~D~V~ig 202 (257)
.....+.++.+++.+++||++ +| +.+.++|..+.+.| +|+|.++
T Consensus 171 f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~G-vd~I~Vs 217 (352)
T PRK05437 171 FRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAG-VKAIDVA 217 (352)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcC-CCEEEEC
Confidence 111236678899989999886 33 35899998888887 9998873
No 437
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.65 E-value=7.1 Score=35.02 Aligned_cols=138 Identities=16% Similarity=0.088 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEcc--CCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSP--AIDHLD 106 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~--~~~~~~ 106 (257)
+..++|.++|.|.|.|-.+.. +. +.+..+|-+.+.-.+.+.++|+..|+. |. .+..=++. ...+.
T Consensus 83 ~~ie~A~~~g~~~v~i~~~~s--------~~--~~~~n~~~~~~e~l~~~~~~v~~ak~~-g~-~v~~~i~~~~~~~~~- 149 (287)
T PRK05692 83 KGLEAALAAGADEVAVFASAS--------EA--FSQKNINCSIAESLERFEPVAEAAKQA-GV-RVRGYVSCVLGCPYE- 149 (287)
T ss_pred HHHHHHHHcCCCEEEEEEecC--------HH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CC-EEEEEEEEEecCCCC-
Confidence 345678899999988865441 11 122334445555555666677776654 32 22211110 00111
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC-C-
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF-T- 183 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i-t- 183 (257)
...+.+...++++.+.++| ++.|.+.... + ...+....+.++.+++.++ +||-. ... |
T Consensus 150 --~~~~~~~~~~~~~~~~~~G------~d~i~l~DT~----G------~~~P~~v~~lv~~l~~~~~~~~i~~-H~Hn~~ 210 (287)
T PRK05692 150 --GEVPPEAVADVAERLFALG------CYEISLGDTI----G------VGTPGQVRAVLEAVLAEFPAERLAG-HFHDTY 210 (287)
T ss_pred --CCCCHHHHHHHHHHHHHcC------CcEEEecccc----C------ccCHHHHHHHHHHHHHhCCCCeEEE-EecCCC
Confidence 1235788899999999999 7777765421 1 1123344566778888876 56533 322 2
Q ss_pred ---HHHHHHHHHcCCCcEE
Q 025135 184 ---RELGIQALAEDGADLV 199 (257)
Q Consensus 184 ---~~~a~~~l~~g~~D~V 199 (257)
...+..+++.| +|.|
T Consensus 211 Gla~AN~laA~~aG-~~~i 228 (287)
T PRK05692 211 GQALANIYASLEEG-ITVF 228 (287)
T ss_pred CcHHHHHHHHHHhC-CCEE
Confidence 56677889988 8877
No 438
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=91.36 E-value=5.5 Score=32.11 Aligned_cols=133 Identities=17% Similarity=0.106 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDH 104 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~ 104 (257)
+.+.+-++.+.+.|.+.|++-.-. .++..+ ++.. .++++.+++.++. ++.+-+...
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~-------~~~~~~-~~~~------------~~~~~~~~~~~~~-~~~~~~~~~--- 67 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRS-------SDPEEA-ETDD------------KEVLKEVAAETDL-PLGVQLAIN--- 67 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEE-------ECcccC-CCcc------------ccHHHHHHhhcCC-cEEEEEccC---
Confidence 455566667778899999875322 112111 1110 0456666666543 555554321
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCC-
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGF- 182 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~i- 182 (257)
+..+.....++.+.+.| +|+|+++..... ......+.++.+++.+ +.|++..-..
T Consensus 68 ------~~~~~~~~~a~~~~~~g------~d~v~l~~~~~~-----------~~~~~~~~~~~i~~~~~~~~v~~~~~~~ 124 (200)
T cd04722 68 ------DAAAAVDIAAAAARAAG------ADGVEIHGAVGY-----------LAREDLELIRELREAVPDVKVVVKLSPT 124 (200)
T ss_pred ------CchhhhhHHHHHHHHcC------CCEEEEeccCCc-----------HHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 11121222367788899 899988753210 0112345677788887 6776654332
Q ss_pred C-HHHHHHHHHcCCCcEEEechHHh
Q 025135 183 T-RELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 183 t-~~~a~~~l~~g~~D~V~igR~~i 206 (257)
+ ...+ . +.+-.+|+|.+.....
T Consensus 125 ~~~~~~-~-~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 125 GELAAA-A-AEEAGVDEVGLGNGGG 147 (200)
T ss_pred Cccchh-h-HHHcCCCEEEEcCCcC
Confidence 2 2222 1 3444599999876544
No 439
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=90.98 E-value=6.5 Score=35.31 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCC--
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDA-- 107 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~-- 107 (257)
..++|.++||.-|-|.++|- ++|...++..|+++...+ .|- .|-.-|..-.+-.++
T Consensus 90 ~~~~ai~~GFsSvMiDgS~~--------------------~~eENi~~tkevv~~ah~-~gv-sVEaElG~~GG~Edg~~ 147 (286)
T COG0191 90 DCKQAIRAGFSSVMIDGSHL--------------------PFEENIAITKEVVEFAHA-YGV-SVEAELGTLGGEEDGVV 147 (286)
T ss_pred HHHHHHhcCCceEEecCCcC--------------------CHHHHHHHHHHHHHHHHH-cCC-cEEEEeccccCccCCcc
Confidence 45667788898888888771 267788999999988764 332 333333321111111
Q ss_pred --CC---CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCC-
Q 025135 108 --TD---SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGG- 181 (257)
Q Consensus 108 --~~---~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~- 181 (257)
.. ....+++.++ .+..| +|.|.+.-+..++.+.. ..+......++.+++.+++|++.=|+
T Consensus 148 ~~~~~~~~tdp~ea~~f---v~~tg------iD~LA~aiGn~HG~Yk~-----~~p~L~~~~L~~i~~~~~~PlVlHGgS 213 (286)
T COG0191 148 LYTDPADLTDPEEALEF---VERTG------IDALAAAIGNVHGVYKP-----GNPKLDFDRLKEIQEAVSLPLVLHGGS 213 (286)
T ss_pred cccchhhhCCHHHHHHH---HhccC------cceeeeeccccccCCCC-----CCCCCCHHHHHHHHHHhCCCEEEeCCC
Confidence 11 1223444333 34556 77776654444433321 01112345778899999999776555
Q ss_pred -CCHHHHHHHHHcCCC
Q 025135 182 -FTRELGIQALAEDGA 196 (257)
Q Consensus 182 -it~~~a~~~l~~g~~ 196 (257)
+..++..+.|+-|.+
T Consensus 214 Gip~~eI~~aI~~GV~ 229 (286)
T COG0191 214 GIPDEEIREAIKLGVA 229 (286)
T ss_pred CCCHHHHHHHHHhCce
Confidence 578899999998843
No 440
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=90.97 E-value=4.7 Score=37.82 Aligned_cols=41 Identities=15% Similarity=0.022 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 025135 161 EAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 161 ~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~ig 202 (257)
.|+.++.+++.++.|||+-|-++.++|..+++.| +|.|.+.
T Consensus 241 tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G-~d~I~vs 281 (383)
T cd03332 241 TWEDLAFLREWTDLPIVLKGILHPDDARRAVEAG-VDGVVVS 281 (383)
T ss_pred CHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCC-CCEEEEc
Confidence 3466788999999999988777999999999998 9999864
No 441
>PLN02535 glycolate oxidase
Probab=90.94 E-value=4.9 Score=37.40 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 025135 161 EAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 161 ~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~ig 202 (257)
.|+.++.+++.++.|||+-|-+++++|..+++.| +|+|.+.
T Consensus 211 tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~G-vD~I~vs 251 (364)
T PLN02535 211 SWKDIEWLRSITNLPILIKGVLTREDAIKAVEVG-VAGIIVS 251 (364)
T ss_pred CHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcC-CCEEEEe
Confidence 3566788999999999987777999999999987 9999874
No 442
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=90.91 E-value=2.7 Score=37.22 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-cCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccC
Q 025135 24 IDQYRQAALNAIQ-AGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPA 101 (257)
Q Consensus 24 i~~f~~AA~~a~~-aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~ 101 (257)
.++-++.|.|..+ +|.|+|.|-+|. ++++.|+.-+... ||.-=|...
T Consensus 93 ~e~av~nA~rl~ke~GadaVKlEGg~-------------------------------~~~~~i~~l~~~GIPV~gHiGLt 141 (261)
T PF02548_consen 93 PEQAVRNAGRLMKEAGADAVKLEGGA-------------------------------EIAETIKALVDAGIPVMGHIGLT 141 (261)
T ss_dssp HHHHHHHHHHHHHTTT-SEEEEEBSG-------------------------------GGHHHHHHHHHTT--EEEEEES-
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccch-------------------------------hHHHHHHHHHHCCCcEEEEecCc
Q ss_pred -------CCCCC-CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC
Q 025135 102 -------IDHLD-ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ 173 (257)
Q Consensus 102 -------~~~~~-~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~ 173 (257)
.+|.- +...+.....++-++.|+++| +..+.+.. -..+..+.|.+.++
T Consensus 142 PQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AG------af~ivlE~------------------vp~~la~~It~~l~ 197 (261)
T PF02548_consen 142 PQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAG------AFAIVLEC------------------VPAELAKAITEALS 197 (261)
T ss_dssp GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-------SEEEEES------------------BBHHHHHHHHHHSS
T ss_pred hhheeccCCceEEecCHHHHHHHHHHHHHHHHcC------ccEEeeec------------------CHHHHHHHHHHhCC
Q ss_pred CcEEEeC
Q 025135 174 GTFICSG 180 (257)
Q Consensus 174 ~pvi~~G 180 (257)
+|+|+-|
T Consensus 198 IPtIGIG 204 (261)
T PF02548_consen 198 IPTIGIG 204 (261)
T ss_dssp S-EEEES
T ss_pred CCEEecC
No 443
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=90.86 E-value=5.8 Score=36.80 Aligned_cols=134 Identities=14% Similarity=0.112 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDAT 108 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~ 108 (257)
+..++|.++|.|.|.|..+. |+. +....++-+.+.-.+.+.+.++.+|+. | +-+.++.. +..
T Consensus 75 ~di~~a~~~g~~~i~i~~~~--------Sd~--~~~~~~~~~~~~~~~~~~~~i~~ak~~-G---~~v~~~~e-da~--- 136 (363)
T TIGR02090 75 KDIDKAIDCGVDSIHTFIAT--------SPI--HLKYKLKKSRDEVLEKAVEAVEYAKEH-G---LIVEFSAE-DAT--- 136 (363)
T ss_pred HHHHHHHHcCcCEEEEEEcC--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-C---CEEEEEEe-ecC---
Confidence 34567788999999886543 111 222344544444455556666665543 2 23445432 111
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C----
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T---- 183 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t---- 183 (257)
..+.+...++++.+.+.| ++.|.+.... + ...+......++.+++.+++||-. ... +
T Consensus 137 -r~~~~~l~~~~~~~~~~g------~~~i~l~DT~----G------~~~P~~v~~li~~l~~~~~~~l~~-H~Hnd~GlA 198 (363)
T TIGR02090 137 -RTDIDFLIKVFKRAEEAG------ADRINIADTV----G------VLTPQKMEELIKKLKENVKLPISV-HCHNDFGLA 198 (363)
T ss_pred -CCCHHHHHHHHHHHHhCC------CCEEEEeCCC----C------ccCHHHHHHHHHHHhcccCceEEE-EecCCCChH
Confidence 135788889999999999 7777665421 1 012233445667788777765432 222 2
Q ss_pred HHHHHHHHHcCCCcEE
Q 025135 184 RELGIQALAEDGADLV 199 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V 199 (257)
...+..+++.| +|.|
T Consensus 199 ~AN~laA~~aG-a~~v 213 (363)
T TIGR02090 199 TANSIAGVKAG-AEQV 213 (363)
T ss_pred HHHHHHHHHCC-CCEE
Confidence 45667888887 6655
No 444
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=90.85 E-value=12 Score=33.66 Aligned_cols=84 Identities=14% Similarity=0.003 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCC-CCC-chhHHHHHHHHHHHhCCcEEEeCC--C-CHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGR-PGT-EDEEAQLLRTWRRSYQGTFICSGG--F-TREL 186 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~ir~~~~~pvi~~G~--i-t~~~ 186 (257)
+.+++.++++.+++.| +|+|++.-...........+. ... +....+.++.+++.+++||++=-. + +..+
T Consensus 111 ~~~~~~~~a~~~~~~g------ad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~ 184 (299)
T cd02940 111 NKEDWTELAKLVEEAG------ADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIRE 184 (299)
T ss_pred CHHHHHHHHHHHHhcC------CCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHH
Confidence 4678889999999888 788776322111110000000 001 112335567788888899876422 2 2333
Q ss_pred HHHHHHcCCCcEEEe
Q 025135 187 GIQALAEDGADLVAY 201 (257)
Q Consensus 187 a~~~l~~g~~D~V~i 201 (257)
..+.+++.++|+|.+
T Consensus 185 ~a~~~~~~Gadgi~~ 199 (299)
T cd02940 185 IARAAKEGGADGVSA 199 (299)
T ss_pred HHHHHHHcCCCEEEE
Confidence 334444445999874
No 445
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.84 E-value=3.4 Score=36.45 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=66.1
Q ss_pred CcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCC-CCCCchhHHHHHHHHHHHhCCcEEEeCCCCHHHHHH
Q 025135 111 DPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESG-RPGTEDEEAQLLRTWRRSYQGTFICSGGFTRELGIQ 189 (257)
Q Consensus 111 ~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ir~~~~~pvi~~G~it~~~a~~ 189 (257)
++.+...++|+.++++| +.++- .+.|+. .+... ..+....-...+.++++.+++|++. .-+++++++.
T Consensus 26 Es~e~~~~~a~~~~~~g------~~~~r--~g~~kp--Rts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T-ev~d~~~v~~ 94 (250)
T PRK13397 26 ESYDHIRLAASSAKKLG------YNYFR--GGAYKP--RTSAASFQGLGLQGIRYLHEVCQEFGLLSVS-EIMSERQLEE 94 (250)
T ss_pred CCHHHHHHHHHHHHHcC------CCEEE--ecccCC--CCCCcccCCCCHHHHHHHHHHHHHcCCCEEE-eeCCHHHHHH
Confidence 46788899999999999 66653 333431 11111 1111223345667788889999886 2337777777
Q ss_pred HHHcCCCcEEEechHHhhCchHHHHHH-cCCC
Q 025135 190 ALAEDGADLVAYGRLFISNPDLVLRFK-LNAP 220 (257)
Q Consensus 190 ~l~~g~~D~V~igR~~iadP~l~~k~~-~g~~ 220 (257)
+.+ .+|++.+|-..+.|.+|.+.+. .|.|
T Consensus 95 ~~e--~vdilqIgs~~~~n~~LL~~va~tgkP 124 (250)
T PRK13397 95 AYD--YLDVIQVGARNMQNFEFLKTLSHIDKP 124 (250)
T ss_pred HHh--cCCEEEECcccccCHHHHHHHHccCCe
Confidence 765 4999999999999999998875 3555
No 446
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=90.79 E-value=14 Score=35.06 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEE--EEEccCCC
Q 025135 26 QYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVG--VRMSPAID 103 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~--vrls~~~~ 103 (257)
++.+.++.+.++|.|.||+. . .+...+..+.++++++..+...+. +|+..
T Consensus 17 ~~~~~~~~~~~~Gv~~ie~g--~-----------------------p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d--- 68 (430)
T PRK07028 17 RAVEIAKEAVAGGADWIEAG--T-----------------------PLIKSEGMNAIRTLRKNFPDHTIVADMKTMD--- 68 (430)
T ss_pred HHHHHHHHHHhcCCcEEEeC--C-----------------------HHHHHhhHHHHHHHHHHCCCCEEEEEeeecc---
Confidence 33446667778999999852 1 112334567788888776543343 33321
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEe-CCC
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICS-GGF 182 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~-G~i 182 (257)
.+ ...++.+.++| ++++|++... ........++.+++ .+.+++.. -..
T Consensus 69 -------~g----~~~v~~a~~aG------AdgV~v~g~~-------------~~~~~~~~i~~a~~-~G~~~~~g~~s~ 117 (430)
T PRK07028 69 -------TG----AIEVEMAAKAG------ADIVCILGLA-------------DDSTIEDAVRAARK-YGVRLMADLINV 117 (430)
T ss_pred -------ch----HHHHHHHHHcC------CCEEEEecCC-------------ChHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 11 12456677889 8999976421 01111233344444 46665541 122
Q ss_pred -C-HHHHHHHHHcCCCcEEEechHHh------hCchHHHHHHc
Q 025135 183 -T-RELGIQALAEDGADLVAYGRLFI------SNPDLVLRFKL 217 (257)
Q Consensus 183 -t-~~~a~~~l~~g~~D~V~igR~~i------adP~l~~k~~~ 217 (257)
| .+.+.++++.| +|+|.++-++- .-.+.++++++
T Consensus 118 ~t~~e~~~~a~~~G-aD~I~~~pg~~~~~~~~~~~~~l~~l~~ 159 (430)
T PRK07028 118 PDPVKRAVELEELG-VDYINVHVGIDQQMLGKDPLELLKEVSE 159 (430)
T ss_pred CCHHHHHHHHHhcC-CCEEEEEeccchhhcCCChHHHHHHHHh
Confidence 3 45567777776 99999885441 11256667664
No 447
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=90.76 E-value=10 Score=33.45 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=67.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeE
Q 025135 15 LQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRV 94 (257)
Q Consensus 15 lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v 94 (257)
-|.+|++.+.++ ++.++++|+|||-+-+ |.+ +.+-| .+.++.+.+.+++-+
T Consensus 67 Ys~~E~~~M~~d----i~~~~~~GadGvV~G~---------L~~--dg~vD-------------~~~~~~Li~~a~~~~- 117 (248)
T PRK11572 67 YSDGEFAAMLED----IATVRELGFPGLVTGV---------LDV--DGHVD-------------MPRMRKIMAAAGPLA- 117 (248)
T ss_pred CCHHHHHHHHHH----HHHHHHcCCCEEEEee---------ECC--CCCcC-------------HHHHHHHHHHhcCCc-
Confidence 377888777665 5566889999998632 222 11222 223333334444323
Q ss_pred EEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCC
Q 025135 95 GVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQG 174 (257)
Q Consensus 95 ~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~ 174 (257)
+-++- .|+... + . .+-.+.|.+.| ++-|=.++. .. .-......++.+.+..+.
T Consensus 118 -vTFHR--AfD~~~--d-~---~~al~~l~~lG------~~rILTSGg-~~-----------~a~~g~~~L~~lv~~a~~ 170 (248)
T PRK11572 118 -VTFHR--AFDMCA--N-P---LNALKQLADLG------VARILTSGQ-QQ-----------DAEQGLSLIMELIAASDG 170 (248)
T ss_pred -eEEec--hhhccC--C-H---HHHHHHHHHcC------CCEEECCCC-CC-----------CHHHHHHHHHHHHHhcCC
Confidence 23331 222211 1 2 23456677888 665533321 10 111222344444443333
Q ss_pred c-EEEeCCCCHHHHHHHHHcCCCcEEEe
Q 025135 175 T-FICSGGFTRELGIQALAEDGADLVAY 201 (257)
Q Consensus 175 p-vi~~G~it~~~a~~~l~~g~~D~V~i 201 (257)
. |+.+||++++.+.++++.| +.-|=+
T Consensus 171 ~~Im~GgGV~~~Nv~~l~~tG-~~~~H~ 197 (248)
T PRK11572 171 PIIMAGAGVRLSNLHKFLDAG-VREVHS 197 (248)
T ss_pred CEEEeCCCCCHHHHHHHHHcC-CCEEee
Confidence 3 6777889999999987655 665543
No 448
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=90.74 E-value=6 Score=33.26 Aligned_cols=112 Identities=23% Similarity=0.201 Sum_probs=64.5
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHH-HHHHHHHHHHhCC--CeEEEEEccCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFL-MQLVREVIVAIGA--DRVGVRMSPAIDHLD 106 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~-~eiv~aiR~~vg~--~~v~vrls~~~~~~~ 106 (257)
.|+.|.++|.|.|.+-.-. .| .|.+ .+..+.+++.+.+ ..+++=++.
T Consensus 11 d~~~a~~~Gvd~ig~i~~~-------~s-----------------~R~v~~~~a~~l~~~~~~~~~~V~v~vn~------ 60 (203)
T cd00405 11 DALAAAEAGADAIGFIFAP-------KS-----------------PRYVSPEQAREIVAALPPFVKRVGVFVNE------ 60 (203)
T ss_pred HHHHHHHcCCCEEEEecCC-------CC-----------------CCCCCHHHHHHHHHhCCCCCcEEEEEeCC------
Confidence 4667788999999975332 01 2344 6677777777766 356665542
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHH
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRE 185 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~ 185 (257)
+.++. .+.+.+.+ ++++|++.. . ....++.+++.++.+++-+=++ +..
T Consensus 61 -----~~~~i---~~ia~~~~------~d~Vqlhg~---------------e--~~~~~~~l~~~~~~~~i~~i~~~~~~ 109 (203)
T cd00405 61 -----DLEEI---LEIAEELG------LDVVQLHGD---------------E--SPEYCAQLRARLGLPVIKAIRVKDEE 109 (203)
T ss_pred -----CHHHH---HHHHHhcC------CCEEEECCC---------------C--CHHHHHHHHhhcCCcEEEEEecCChh
Confidence 24443 34445667 899999752 1 1234566777666665532233 322
Q ss_pred HH--HHHHHcCCCcEEEech
Q 025135 186 LG--IQALAEDGADLVAYGR 203 (257)
Q Consensus 186 ~a--~~~l~~g~~D~V~igR 203 (257)
+. .+... ..+|++.+-.
T Consensus 110 ~~~~~~~~~-~~aD~il~dt 128 (203)
T cd00405 110 DLEKAAAYA-GEVDAILLDS 128 (203)
T ss_pred hHHHhhhcc-ccCCEEEEcC
Confidence 22 23333 4589997744
No 449
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.73 E-value=12 Score=33.48 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=51.4
Q ss_pred eEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEe--eCCCcccCCCcCCCCCCCch-hHHHHHHHHH
Q 025135 93 RVGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHV--TQPRYTAYGQTESGRPGTED-EEAQLLRTWR 169 (257)
Q Consensus 93 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ir 169 (257)
|+.+=|.. .+.+++.+.++.+++++. .++++++ +-|.....+.. +...+ ...+.++.+|
T Consensus 92 pl~~qi~g----------~~~~~~~~~a~~~~~~~~----~~d~ielN~~cP~~~~~g~~----l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 92 PLIASVYG----------SSVEEFAEVAEKLEKAPP----YVDAYELNLSCPHVKGGGIA----IGQDPELSADVVKAVK 153 (300)
T ss_pred cEEEEeec----------CCHHHHHHHHHHHHhccC----ccCEEEEECCCCCCCCCccc----cccCHHHHHHHHHHHH
Confidence 67776653 246788899999987630 1566665 33332211100 11122 2345677888
Q ss_pred HHhCCcEEEeCC--C-CHHHHHHHHHcCCCcEEEe
Q 025135 170 RSYQGTFICSGG--F-TRELGIQALAEDGADLVAY 201 (257)
Q Consensus 170 ~~~~~pvi~~G~--i-t~~~a~~~l~~g~~D~V~i 201 (257)
+.+++||.+=-+ + +..+..+.+++.++|+|.+
T Consensus 154 ~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 154 DKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred HhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEE
Confidence 888889775433 2 2233334455556999987
No 450
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=90.70 E-value=0.41 Score=43.92 Aligned_cols=158 Identities=11% Similarity=0.034 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCC
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAID 103 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~ 103 (257)
..+|.+.+-+..+||.|..|+|..| |+- --+..-|-.+---+.++.||-.-||+.+.- |+.-|+.+.
T Consensus 217 k~~w~el~d~~eqag~d~lE~nlsc---------phg-m~ergmgla~gq~p~v~~EvC~Wi~A~~~I-p~~~kmTPN-- 283 (471)
T KOG1799|consen 217 KKCWMELNDSGEQAGQDDLETNLSC---------PHG-MCERGMGLALGQCPIVDCEVCGWINAKATI-PMVSKMTPN-- 283 (471)
T ss_pred hhhHHHHhhhHHhhcccchhccCCC---------CCC-CccccccceeccChhhhHHHhhhhhhcccc-ccccccCCC--
Confidence 3467778888899999999999998 542 111122223334456888998898877643 677788763
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCCcc-----------CCceeEEEee-CCCcccCCCcCCCCCCCc---hhHHHHHHHH
Q 025135 104 HLDATDSDPLGLGLAVIQGLNKLQIDQ-----------GAKLTYLHVT-QPRYTAYGQTESGRPGTE---DEEAQLLRTW 168 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~L~~~G~~~-----------~~~vd~i~v~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~i 168 (257)
+.+..++++...+.|+.. +++.+ ++- ++.... .+..|+++.+ +.....+..|
T Consensus 284 ---------itd~revar~~~~~g~~GiaA~NTi~SvM~i~~~--~~~P~~~~~~--~sT~GG~S~~AvRPIAl~~V~~I 350 (471)
T KOG1799|consen 284 ---------ITDKREVARSVNPVGCEGIAAINTIMSVMGIDMK--TLRPEPCVEG--YSTPGGYSYKAVRPIALAKVMNI 350 (471)
T ss_pred ---------cccccccchhcCcccccchhhHhHHHHHhccccc--ccCCCccccc--ccCCCCccccccchHHHHHHHHH
Confidence 111223344343333210 01111 110 011110 0111222222 2222222234
Q ss_pred HHHh-CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 025135 169 RRSY-QGTFICSGGF-TRELGIQALAEDGADLVAYGRLFISN 208 (257)
Q Consensus 169 r~~~-~~pvi~~G~i-t~~~a~~~l~~g~~D~V~igR~~iad 208 (257)
.+.. .-|+.+.||+ |.+++.+.|..| ...|.++.+....
T Consensus 351 A~~m~~F~l~~~GGvEt~~~~~~Fil~G-s~~vQVCt~V~~~ 391 (471)
T KOG1799|consen 351 AKMMKEFSLSGIGGVETGYDAAEFILLG-SNTVQVCTGVMMH 391 (471)
T ss_pred HHHhhcCccccccCcccccchhhHhhcC-CcHhhhhhHHHhc
Confidence 4444 3579999999 999999999988 7888888877654
No 451
>PLN02363 phosphoribosylanthranilate isomerase
Probab=90.69 E-value=8.2 Score=34.14 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=27.6
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 173 QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 173 ~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
..|+++.||++++...++++.-...+|=+..++=..|
T Consensus 199 ~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE~~p 235 (256)
T PLN02363 199 RNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGICGPD 235 (256)
T ss_pred CCCEEEECCCCHHHHHHHHHhcCCcEEEeCCcccCCC
Confidence 4589999999999999998865566666665554333
No 452
>PTZ00081 enolase; Provisional
Probab=90.69 E-value=3.2 Score=39.59 Aligned_cols=67 Identities=6% Similarity=0.056 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCC--CHHHHH
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGF--TRELGI 188 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~i--t~~~a~ 188 (257)
.+....+++.+++.+ +.||+ +|- ....+...+++++.+ ++||++.-.+ +++++.
T Consensus 284 ~eli~~~~~~l~~y~------I~~IE--DPl--------------~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~ 341 (439)
T PTZ00081 284 EELVELYLDLVKKYP------IVSIE--DPF--------------DQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIK 341 (439)
T ss_pred HHHHHHHHHHHhcCC------cEEEE--cCC--------------CcccHHHHHHHHHhhCCCceEEcCCcccCCHHHHH
Confidence 333444567888888 77776 552 122345567788888 5666554433 499999
Q ss_pred HHHHcCCCcEEEe
Q 025135 189 QALAEDGADLVAY 201 (257)
Q Consensus 189 ~~l~~g~~D~V~i 201 (257)
+.|+.+.||.|.+
T Consensus 342 ~~I~~~aad~i~i 354 (439)
T PTZ00081 342 KAIEKKACNALLL 354 (439)
T ss_pred HHHHhCCCCEEEe
Confidence 9999999999876
No 453
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=90.67 E-value=3.7 Score=36.61 Aligned_cols=59 Identities=20% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE
Q 025135 22 EVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR 97 (257)
Q Consensus 22 ~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr 97 (257)
-..++.++.|..|.+||+..|-||. |.|.=| ..........|++++||+++++-.|.+-
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~----------------R~~~~G-~~s~d~~~~~e~~~~IR~~~pd~iv~~T 81 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHA----------------RDDEDG-RPSLDPELYAEVVEAIRAACPDLIVQPT 81 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-E----------------E-TTTS--EE--HHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeec----------------CCCCCC-CcCCCHHHHHHHHHHHHHHCCCeEEEeC
Confidence 3455568899999999999999983 433333 3455688999999999999765344433
No 454
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=90.66 E-value=8.5 Score=34.16 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=80.6
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATD 109 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~ 109 (257)
..+++.++|.|.|.|-.+. .--+.++..|-+.+.-.+.+.+.++.+|+. |- -+.+++ +.|.+..
T Consensus 83 ~~~~a~~~g~~~i~i~~~~----------sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~-G~---~v~~~~-~~~~d~~- 146 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKS----------WDLHVTEALGTTLEENLAMIRDSVAYLKSH-GR---EVIFDA-EHFFDGY- 146 (273)
T ss_pred HHHHHHhCCCCEEEEEEcC----------CHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-CC---eEEEeE-EeccccC-
Confidence 3456778899988775432 111234555666666677777888887764 32 233332 2232211
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC-CcEEEeCCC-C----
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ-GTFICSGGF-T---- 183 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G~i-t---- 183 (257)
..+.+...++++.+.+.| ++.|.+.... + ...+......++.+++.++ +|+ ..... |
T Consensus 147 ~~~~~~~~~~~~~~~~~g------~~~i~l~DT~----G------~~~P~~v~~lv~~l~~~~~~~~l-~~H~Hnd~Gla 209 (273)
T cd07941 147 KANPEYALATLKAAAEAG------ADWLVLCDTN----G------GTLPHEIAEIVKEVRERLPGVPL-GIHAHNDSGLA 209 (273)
T ss_pred CCCHHHHHHHHHHHHhCC------CCEEEEecCC----C------CCCHHHHHHHHHHHHHhCCCCee-EEEecCCCCcH
Confidence 134677789999999999 6766654421 1 1123344566778888876 554 33333 3
Q ss_pred HHHHHHHHHcCCCcEEE
Q 025135 184 RELGIQALAEDGADLVA 200 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~ 200 (257)
...+..+++.| +|.|-
T Consensus 210 ~An~laA~~aG-a~~id 225 (273)
T cd07941 210 VANSLAAVEAG-ATQVQ 225 (273)
T ss_pred HHHHHHHHHcC-CCEEE
Confidence 56677889888 66553
No 455
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.65 E-value=5.8 Score=36.77 Aligned_cols=40 Identities=15% Similarity=-0.049 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEe
Q 025135 161 EAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAY 201 (257)
Q Consensus 161 ~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~i 201 (257)
.++.++.+++.+++||++-|-.++++|+.+++.| +|.|.+
T Consensus 209 ~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~v 248 (351)
T cd04737 209 SPADIEFIAKISGLPVIVKGIQSPEDADVAINAG-ADGIWV 248 (351)
T ss_pred CHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcC-CCEEEE
Confidence 3466778999999999988755999999999887 999988
No 456
>PLN02979 glycolate oxidase
Probab=90.60 E-value=5.9 Score=36.89 Aligned_cols=40 Identities=13% Similarity=-0.008 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 025135 162 AQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 162 ~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~ig 202 (257)
|+.++.+|+.+++|||+-|-.++++|+.+++.| +|.|.++
T Consensus 212 W~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~G-vd~I~Vs 251 (366)
T PLN02979 212 WKDVQWLQTITKLPILVKGVLTGEDARIAIQAG-AAGIIVS 251 (366)
T ss_pred HHHHHHHHhccCCCEEeecCCCHHHHHHHHhcC-CCEEEEC
Confidence 466788999999999987777999999999998 9998774
No 457
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=90.58 E-value=2.8 Score=36.29 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCC
Q 025135 26 QYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHL 105 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~ 105 (257)
.+.+..+.+.++|+|.+-+----| +|. |. ..|-.++++++|+..++.++-+++-..
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg----~fv-pn---------------~~~G~~~v~~lr~~~~~~~lDvHLm~~---- 75 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDG----HFV-PN---------------LSFGPPVVKSLRKHLPNTFLDCHLMVS---- 75 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccC----ccC-CC---------------cCcCHHHHHHHHhcCCCCCEEEEECCC----
Confidence 456667778889999876644332 232 22 234557899999876443666666532
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCc-EEEeCCCCH
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGT-FICSGGFTR 184 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~G~it~ 184 (257)
+.+ ..++.+.++| +|++++|.-. ........++.+++.-... |..+-..+.
T Consensus 76 ------~p~---~~i~~~~~~G------ad~itvH~ea-------------~~~~~~~~l~~ik~~G~~~gval~p~t~~ 127 (228)
T PTZ00170 76 ------NPE---KWVDDFAKAG------ASQFTFHIEA-------------TEDDPKAVARKIREAGMKVGVAIKPKTPV 127 (228)
T ss_pred ------CHH---HHHHHHHHcC------CCEEEEeccC-------------CchHHHHHHHHHHHCCCeEEEEECCCCCH
Confidence 222 3457788899 8888887421 1111234455566542222 333333357
Q ss_pred HHHHHHHHcCCCcEEE
Q 025135 185 ELGIQALAEDGADLVA 200 (257)
Q Consensus 185 ~~a~~~l~~g~~D~V~ 200 (257)
++...++....+|.|.
T Consensus 128 e~l~~~l~~~~vD~Vl 143 (228)
T PTZ00170 128 EVLFPLIDTDLVDMVL 143 (228)
T ss_pred HHHHHHHccchhhhHH
Confidence 7788887666688774
No 458
>PLN02858 fructose-bisphosphate aldolase
Probab=90.36 E-value=11 Score=41.17 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=80.3
Q ss_pred HHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEE---EccCCCC---
Q 025135 31 ALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVR---MSPAIDH--- 104 (257)
Q Consensus 31 A~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vr---ls~~~~~--- 104 (257)
.++|.++||+.|-|.++| =++|...++..|+++-.+.. |- .|-.- +...++.
T Consensus 1185 i~~ai~~Gf~SVM~DgS~--------------------l~~eeNi~~t~~vv~~Ah~~-gv-~VEaElG~v~g~e~~~~~ 1242 (1378)
T PLN02858 1185 LLEALELGFDSVMVDGSH--------------------LSFTENISYTKSISSLAHSK-GL-MVEAELGRLSGTEDGLTV 1242 (1378)
T ss_pred HHHHHHhCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEecccCCccCCccc
Confidence 344555666666666554 14688899999999988763 21 22222 2222211
Q ss_pred CCC-CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh---CCcEEEeC
Q 025135 105 LDA-TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY---QGTFICSG 180 (257)
Q Consensus 105 ~~~-~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~~pvi~~G 180 (257)
.+. ....+.+++.+|++ +.| +|++.++-++.+..+.. + .+....+.+++|++.+ ++|++.=|
T Consensus 1243 ~~~~~~~T~p~~a~~Fv~---~Tg------vD~LAvaiGt~HG~Y~~--~---~p~l~~~~l~~i~~~~~~~~vpLVlHG 1308 (1378)
T PLN02858 1243 EEYEAKLTDVDQAKEFID---ETG------IDALAVCIGNVHGKYPA--S---GPNLRLDLLKELRALSSKKGVLLVLHG 1308 (1378)
T ss_pred cccccCCCCHHHHHHHHH---hcC------CcEEeeecccccccCCC--C---CCccCHHHHHHHHHHhcCCCCcEEEeC
Confidence 000 01234566655544 568 88887766555443311 0 1123346788999998 79977666
Q ss_pred C--CCHHHHHHHHHcCCCcEEEechHH
Q 025135 181 G--FTRELGIQALAEDGADLVAYGRLF 205 (257)
Q Consensus 181 ~--it~~~a~~~l~~g~~D~V~igR~~ 205 (257)
+ +..++..++++.| +-=|=++.-+
T Consensus 1309 gSG~~~~~~~~ai~~G-i~KiNi~T~~ 1334 (1378)
T PLN02858 1309 ASGLPESLIKECIENG-VRKFNVNTEV 1334 (1378)
T ss_pred CCCCCHHHHHHHHHcC-CeEEEeCHHH
Confidence 5 4678889999988 5555555544
No 459
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=90.22 E-value=12 Score=32.71 Aligned_cols=135 Identities=12% Similarity=0.140 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCCEEEeccc-ccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC--eEEEEEccCC
Q 025135 26 QYRQAALNAIQAGFDGIEIHGA-HGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD--RVGVRMSPAI 102 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a-~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~--~v~vrls~~~ 102 (257)
...+.+++..++|..||.|--. || .=+..+. -..-..+-|++++++..+. .|..|....-
T Consensus 86 ~v~~tv~~~~~aG~agi~IEDq~~~----------------~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~ 148 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIEDQRCG----------------HGGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFL 148 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEESBSTT----------------TSTT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHC
T ss_pred HHHHHHHHHHHcCCcEEEeeccccC----------------CCCCcee-CHHHHHHHHHHHHHhccCCeEEEEEeccccc
Confidence 4455667778899999998654 32 1112222 2334555577777776543 4777876420
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC
Q 025135 103 DHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i 182 (257)
. .....+++++=++...++| .|.+-+..+ . ..+.++++.+.++.|+.++-.-
T Consensus 149 ~-----~~~~~deaI~R~~aY~eAG------AD~ifi~~~---------------~--~~~~i~~~~~~~~~Pl~v~~~~ 200 (238)
T PF13714_consen 149 R-----AEEGLDEAIERAKAYAEAG------ADMIFIPGL---------------Q--SEEEIERIVKAVDGPLNVNPGP 200 (238)
T ss_dssp H-----HHHHHHHHHHHHHHHHHTT-------SEEEETTS---------------S--SHHHHHHHHHHHSSEEEEETTS
T ss_pred c-----CCCCHHHHHHHHHHHHHcC------CCEEEeCCC---------------C--CHHHHHHHHHhcCCCEEEEcCC
Confidence 0 0135788899999999999 777765432 0 1233677788889997665422
Q ss_pred CHHHHHHHHHcCCCcEEEechHHh
Q 025135 183 TRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 183 t~~~a~~~l~~g~~D~V~igR~~i 206 (257)
..-..+++-+-| +..|.++-.++
T Consensus 201 ~~~~~~eL~~lG-v~~v~~~~~~~ 223 (238)
T PF13714_consen 201 GTLSAEELAELG-VKRVSYGNSLL 223 (238)
T ss_dssp SSS-HHHHHHTT-ESEEEETSHHH
T ss_pred CCCCHHHHHHCC-CcEEEEcHHHH
Confidence 113445555556 99999986655
No 460
>PRK14565 triosephosphate isomerase; Provisional
Probab=90.17 E-value=0.95 Score=39.58 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=41.8
Q ss_pred HHHHHHHHHh-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 163 QLLRTWRRSY-QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 163 ~~~~~ir~~~-~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
.....||+.. +++|+.+|+++++.+++++..-.+|.+.+||+.+ +|+-+.++.
T Consensus 178 ~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl-~~~~f~~ii 231 (237)
T PRK14565 178 EAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASL-DVDSFCKII 231 (237)
T ss_pred HHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhh-cHHHHHHHH
Confidence 4445577654 4688888889999999999988899999999999 666555554
No 461
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=90.13 E-value=15 Score=33.93 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCCccCCceeEEEeeCCC----cccC--CCc---CCCCCCCchhHHHHHHHHHHHh---CCcEEEeC
Q 025135 113 LGLGLAVIQGLNKLQIDQGAKLTYLHVTQPR----YTAY--GQT---ESGRPGTEDEEAQLLRTWRRSY---QGTFICSG 180 (257)
Q Consensus 113 ~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~----~~~~--~~~---~~~~~~~~~~~~~~~~~ir~~~---~~pvi~~G 180 (257)
.+.....++...++| .|+|-+--+. +... +.. ....... ....+.++.+.+.. ++||+..|
T Consensus 216 ~d~Ia~AaRiaaELG------ADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~-~~~~~~~~~~V~ac~ag~vpVviAG 288 (348)
T PRK09250 216 ADLTGQANHLAATIG------ADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTS-DHPIDLVRYQVANCYMGRRGLINSG 288 (348)
T ss_pred HHHHHHHHHHHHHHc------CCEEEecCCCChhhHHHhhcccccccccccccc-cchHHHHHHHHHhhccCCceEEEeC
Confidence 455566677778899 8888764321 1110 000 0000000 11123344444554 68888877
Q ss_pred CC--CH----HHHHHH---HHcCCCcEEEechHHhhCc
Q 025135 181 GF--TR----ELGIQA---LAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 181 ~i--t~----~~a~~~---l~~g~~D~V~igR~~iadP 209 (257)
|= +. +...++ ++.| +..|.+||=....|
T Consensus 289 G~k~~~~e~L~~v~~a~~~i~aG-a~Gv~iGRNIfQ~~ 325 (348)
T PRK09250 289 GASKGEDDLLDAVRTAVINKRAG-GMGLIIGRKAFQRP 325 (348)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcC-CcchhhchhhhcCC
Confidence 74 33 345667 7755 99999999988766
No 462
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.11 E-value=2.1 Score=39.28 Aligned_cols=69 Identities=17% Similarity=0.293 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC
Q 025135 117 LAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG 195 (257)
Q Consensus 117 ~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~ 195 (257)
.+-+..|.++|+ .+|+|.+.... + ......++++.||+.++.+.+..|.+ |++++..+++.|
T Consensus 99 ~~~~~~Lv~ag~----~~d~i~iD~a~----g--------h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG- 161 (326)
T PRK05458 99 YDFVDQLAAEGL----TPEYITIDIAH----G--------HSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG- 161 (326)
T ss_pred HHHHHHHHhcCC----CCCEEEEECCC----C--------chHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC-
Confidence 345666777751 03776653211 0 11233467888999987444444666 999999999988
Q ss_pred CcEEEec
Q 025135 196 ADLVAYG 202 (257)
Q Consensus 196 ~D~V~ig 202 (257)
+|+|.+|
T Consensus 162 ad~i~vg 168 (326)
T PRK05458 162 ADATKVG 168 (326)
T ss_pred cCEEEEC
Confidence 9998765
No 463
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=90.10 E-value=11 Score=32.28 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=27.1
Q ss_pred CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 174 GTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 174 ~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
++++-+||+++..+.+.+..| +..|++|-.+.
T Consensus 154 v~~~pTGGVs~~N~~~yla~g-v~avG~Gs~l~ 185 (211)
T COG0800 154 VRFCPTGGVSLDNAADYLAAG-VVAVGLGSWLV 185 (211)
T ss_pred CeEeecCCCCHHHHHHHHhCC-ceEEecCcccc
Confidence 458889999999999999999 88888776554
No 464
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=89.98 E-value=2.6 Score=35.97 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=62.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeE
Q 025135 15 LQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRV 94 (257)
Q Consensus 15 lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v 94 (257)
-|.+|++.+.++ ++.++++|.|||-+- .| .+. |+ +-.+.++.+.+++++-++
T Consensus 66 Ys~~E~~~M~~d----I~~~~~~GadG~VfG----~L-----~~d---------g~------iD~~~~~~Li~~a~~~~~ 117 (201)
T PF03932_consen 66 YSDEEIEIMKED----IRMLRELGADGFVFG----AL-----TED---------GE------IDEEALEELIEAAGGMPV 117 (201)
T ss_dssp --HHHHHHHHHH----HHHHHHTT-SEEEE------B-----ETT---------SS------B-HHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHH----HHHHHHcCCCeeEEE----eE-----CCC---------CC------cCHHHHHHHHHhcCCCeE
Confidence 477888776655 556778999999962 22 111 11 122334444444544444
Q ss_pred EEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--
Q 025135 95 GVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-- 172 (257)
Q Consensus 95 ~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-- 172 (257)
.+ +- .|+... +.. +-.+.|.+.| ++-|=.+... .. -....+.++.+.+..
T Consensus 118 tF--HR--AfD~~~---d~~---~al~~L~~lG------~~rVLTSGg~-~~-----------a~~g~~~L~~lv~~a~~ 169 (201)
T PF03932_consen 118 TF--HR--AFDEVP---DPE---EALEQLIELG------FDRVLTSGGA-PT-----------ALEGIENLKELVEQAKG 169 (201)
T ss_dssp EE---G--GGGGSS---THH---HHHHHHHHHT-------SEEEESTTS-SS-----------TTTCHHHHHHHHHHHTT
T ss_pred EE--eC--cHHHhC---CHH---HHHHHHHhcC------CCEEECCCCC-CC-----------HHHHHHHHHHHHHHcCC
Confidence 33 21 122211 122 3345677778 6765444321 11 111223444443333
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEE
Q 025135 173 QGTFICSGGFTRELGIQALAEDGADLV 199 (257)
Q Consensus 173 ~~pvi~~G~it~~~a~~~l~~g~~D~V 199 (257)
++.|+.+||++++.+.+++++.++.-|
T Consensus 170 ~i~Im~GgGv~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 170 RIEIMPGGGVRAENVPELVEETGVREI 196 (201)
T ss_dssp SSEEEEESS--TTTHHHHHHHHT-SEE
T ss_pred CcEEEecCCCCHHHHHHHHHhhCCeEE
Confidence 355888899999999999985556544
No 465
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=89.90 E-value=6.6 Score=36.60 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 025135 161 EAQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 161 ~~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~ig 202 (257)
.|+.++.+|+.++.|||+-|-.++++|..+++.| +|.|.++
T Consensus 212 tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~G-vd~I~Vs 252 (367)
T PLN02493 212 SWKDVQWLQTITKLPILVKGVLTGEDARIAIQAG-AAGIIVS 252 (367)
T ss_pred CHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcC-CCEEEEC
Confidence 3466788999999999987777999999999998 9998774
No 466
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=89.71 E-value=8 Score=36.08 Aligned_cols=39 Identities=13% Similarity=-0.085 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCcEEEeCCCCHHHHHHHHHcCCCcEEEe
Q 025135 162 AQLLRTWRRSYQGTFICSGGFTRELGIQALAEDGADLVAY 201 (257)
Q Consensus 162 ~~~~~~ir~~~~~pvi~~G~it~~~a~~~l~~g~~D~V~i 201 (257)
++.++.+++.+++||++=|-.++++|+.+++.| +|.|.+
T Consensus 217 w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~G-vd~I~V 255 (367)
T TIGR02708 217 PRDIEEIAGYSGLPVYVKGPQCPEDADRALKAG-ASGIWV 255 (367)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcC-cCEEEE
Confidence 466788999999999987644999999999988 997754
No 467
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.71 E-value=1.9 Score=41.52 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCC-CHHHHHHHHH
Q 025135 115 LGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGF-TRELGIQALA 192 (257)
Q Consensus 115 ~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~i-t~~~a~~~l~ 192 (257)
+..+.++.|.+.| ++.|.+.... . ........++.||+.+ ++|||+ |.+ |.+.+..+++
T Consensus 225 ~~~~ra~~Lv~aG------Vd~i~~D~a~--g----------~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~ 285 (475)
T TIGR01303 225 DVGGKAKALLDAG------VDVLVIDTAH--G----------HQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLE 285 (475)
T ss_pred cHHHHHHHHHHhC------CCEEEEeCCC--C----------CcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHH
Confidence 4467888899999 6666543211 0 1123456778898876 688888 544 9999999999
Q ss_pred cCCCcEEE
Q 025135 193 EDGADLVA 200 (257)
Q Consensus 193 ~g~~D~V~ 200 (257)
.| +|.|-
T Consensus 286 ~G-~d~i~ 292 (475)
T TIGR01303 286 AG-ANIIK 292 (475)
T ss_pred hC-CCEEE
Confidence 98 99986
No 468
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=89.61 E-value=9.6 Score=33.07 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=45.5
Q ss_pred CC-chhhHhhHHHHHHHHHHHHhCCC--eEEEEEccCCCCCC-------CCCCCcHHHHHHHHHHHHhcCCccCCceeEE
Q 025135 68 GG-SIENRCRFLMQLVREVIVAIGAD--RVGVRMSPAIDHLD-------ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYL 137 (257)
Q Consensus 68 GG-s~enR~r~~~eiv~aiR~~vg~~--~v~vrls~~~~~~~-------~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i 137 (257)
|| |++.-.-+...|.+.+|+..|.. +..+=.|+ +|.+ ..+.++.+.....++.|++.| .+++
T Consensus 8 GGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~--~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~G------Ad~i 79 (230)
T COG1794 8 GGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSV--DFPEIETLQRAGEWDEAGEILIDAAKKLERAG------ADFI 79 (230)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecC--CcccHHHHHccCccccHHHHHHHHHHHHHhcC------CCEE
Confidence 45 78888999999999999999865 22222232 2221 233445566677899999999 8888
Q ss_pred EeeC
Q 025135 138 HVTQ 141 (257)
Q Consensus 138 ~v~~ 141 (257)
-+..
T Consensus 80 ~l~~ 83 (230)
T COG1794 80 VLPT 83 (230)
T ss_pred EEeC
Confidence 7643
No 469
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=89.42 E-value=15 Score=32.61 Aligned_cols=143 Identities=20% Similarity=0.077 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEE
Q 025135 18 SEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGV 96 (257)
Q Consensus 18 ~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~v 96 (257)
-||-.++..|++++. ...|+|.|-+|+-. |. +-+...++..++ .+.. .|.+
T Consensus 96 ~DIpnTv~~~a~a~~--~~~g~D~vTvh~~~--------------------G~-----d~l~~~~~~~~~-~~~~v~Vlv 147 (261)
T TIGR02127 96 GDIGSTASAYAKAWL--GHLHADALTVSPYL--------------------GL-----DSLRPFLEYARA-NGAGIFVLV 147 (261)
T ss_pred cChHHHHHHHHHHHH--hhcCCCEEEECCcC--------------------CH-----HHHHHHHHHHhh-cCCEEEEEE
Confidence 578788888877754 36889999998543 31 123333333332 2323 4677
Q ss_pred EEcc-C-CCCCCCCCCC--c-HHHHHHHHHHHHhc----CCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH
Q 025135 97 RMSP-A-IDHLDATDSD--P-LGLGLAVIQGLNKL----QIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT 167 (257)
Q Consensus 97 rls~-~-~~~~~~~~~~--~-~~~~~~l~~~L~~~----G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
+.|. . .++++..... + .+...++++.+.+. | .+-+-+ +. +. .+.++.
T Consensus 148 lTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g------~~GvV~--gA-------------T~---p~e~~~ 203 (261)
T TIGR02127 148 KTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCS------SVGAVV--GA-------------TS---PGDLLR 203 (261)
T ss_pred eCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCC------ceEEEE--CC-------------CC---HHHHHH
Confidence 7774 2 1233321111 2 23344445544432 2 222222 10 12 234566
Q ss_pred HHHHhCCcEEEeCCC-----CHHHHHHHHHcCCCc-EEEechHHhhCchHH
Q 025135 168 WRRSYQGTFICSGGF-----TRELGIQALAEDGAD-LVAYGRLFISNPDLV 212 (257)
Q Consensus 168 ir~~~~~pvi~~G~i-----t~~~a~~~l~~g~~D-~V~igR~~iadP~l~ 212 (257)
+|+.++.-.+++=|| ++++....+...+.| ++.+||+.+.-++-.
T Consensus 204 iR~~~~~~~il~PGigaqG~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~ 254 (261)
T TIGR02127 204 LRIEMPTAPFLVPGFGAQGAEAADLRGLFGADGSGLLINSSRGVLFAGPRS 254 (261)
T ss_pred HHHhCCCCeEEeCCcCCCCCCHHHHHHHhcccCCCEEEEcCHHHhcCCChH
Confidence 777654323433333 467777766555688 899999988655433
No 470
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=89.38 E-value=11 Score=36.88 Aligned_cols=135 Identities=14% Similarity=0.102 Sum_probs=80.9
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSD 111 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~ 111 (257)
+.+.++|.+.|.|..+. ..-++++..+-+.+.-.+.+.+.++.+|+. |. -+.+++ +.+.+.. ..
T Consensus 92 e~~~~~g~~~i~i~~~~----------Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~-G~---~v~~~~-e~~~Da~-r~ 155 (524)
T PRK12344 92 QALLDAGTPVVTIFGKS----------WDLHVTEALRTTLEENLAMIRDSVAYLKAH-GR---EVIFDA-EHFFDGY-KA 155 (524)
T ss_pred HHHHhCCCCEEEEEECC----------CHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-CC---eEEEcc-ccccccc-cC
Confidence 44567888887765432 112456667777777777777777777764 22 344554 2222221 13
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCCC----HHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGFT----RELG 187 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~it----~~~a 187 (257)
+.+...++++.+.+.| ++.+.+... .+ ...+......++.+++.+++||-.=+.-+ ...+
T Consensus 156 d~~~l~~~~~~~~~~G------ad~i~l~DT----vG------~~~P~~v~~li~~l~~~~~v~i~~H~HND~GlA~ANs 219 (524)
T PRK12344 156 NPEYALATLKAAAEAG------ADWVVLCDT----NG------GTLPHEVAEIVAEVRAAPGVPLGIHAHNDSGCAVANS 219 (524)
T ss_pred CHHHHHHHHHHHHhCC------CCeEEEccC----CC------CcCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHH
Confidence 5677889999999999 777765432 11 11233445667788888876654322212 4566
Q ss_pred HHHHHcCCCcEE
Q 025135 188 IQALAEDGADLV 199 (257)
Q Consensus 188 ~~~l~~g~~D~V 199 (257)
..+++.| +|.|
T Consensus 220 laAi~aG-a~~V 230 (524)
T PRK12344 220 LAAVEAG-ARQV 230 (524)
T ss_pred HHHHHhC-CCEE
Confidence 7888887 6655
No 471
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.25 E-value=2 Score=41.45 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh-CCcEEEeCCCCHHHHHHHHHcC
Q 025135 116 GLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY-QGTFICSGGFTRELGIQALAED 194 (257)
Q Consensus 116 ~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~G~it~~~a~~~l~~g 194 (257)
..+.++.|.++| ++.+.+....- ........++.+++.+ +.||++.+..|.+++..+++.|
T Consensus 229 ~~e~a~~L~~ag------vdvivvD~a~g------------~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG 290 (486)
T PRK05567 229 NEERAEALVEAG------VDVLVVDTAHG------------HSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAG 290 (486)
T ss_pred hHHHHHHHHHhC------CCEEEEECCCC------------cchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC
Confidence 366788888999 77665432210 1112456778889887 6888884445999999999998
Q ss_pred CCcEEEec
Q 025135 195 GADLVAYG 202 (257)
Q Consensus 195 ~~D~V~ig 202 (257)
+|+|.+|
T Consensus 291 -ad~i~vg 297 (486)
T PRK05567 291 -ADAVKVG 297 (486)
T ss_pred -CCEEEEC
Confidence 9999664
No 472
>PTZ00333 triosephosphate isomerase; Provisional
Probab=89.17 E-value=1.7 Score=38.51 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=35.7
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHH
Q 025135 173 QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRF 215 (257)
Q Consensus 173 ~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~ 215 (257)
+++|+.+|+++++.+.+++....+|.+.+||+.+. ++|..-+
T Consensus 207 ~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~-~~f~~Ii 248 (255)
T PTZ00333 207 ATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK-PDFVDII 248 (255)
T ss_pred cceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh-hhHHHHH
Confidence 36788889999999999999999999999999997 6755433
No 473
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=89.14 E-value=19 Score=38.58 Aligned_cols=140 Identities=17% Similarity=0.110 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEcc
Q 025135 21 PEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSP 100 (257)
Q Consensus 21 ~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~ 100 (257)
+.+++.|++ .+.+.|.|-+.|.-+- |..|-+...++++|++ |.. +-.=|+-
T Consensus 624 d~vv~~f~~---~~~~~GidifrifD~l------------------------N~~~n~~~~~~~~~~~-g~~-~~~~i~y 674 (1143)
T TIGR01235 624 DNVVKYFVK---QAAQGGIDIFRVFDSL------------------------NWVENMRVGMDAVAEA-GKV-VEAAICY 674 (1143)
T ss_pred HHHHHHHHH---HHHHcCCCEEEECccC------------------------cCHHHHHHHHHHHHHc-CCE-EEEEEEE
Confidence 467777766 4468899999986442 5577788888888864 542 2222221
Q ss_pred CCCCCC-CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEe
Q 025135 101 AIDHLD-ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICS 179 (257)
Q Consensus 101 ~~~~~~-~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~ 179 (257)
..+..+ .....+.+...++++.|+++| ++.|.+.... | ...+......++.+|+.+++||-.=
T Consensus 675 t~~~~d~~~~~~~l~y~~~~ak~l~~~G------ad~I~ikDt~---------G-ll~P~~~~~Lv~~lk~~~~~pi~~H 738 (1143)
T TIGR01235 675 TGDILDPARPKYDLKYYTNLAVELEKAG------AHILGIKDMA---------G-LLKPAAAKLLIKALREKTDLPIHFH 738 (1143)
T ss_pred eccCCCcCCCCCCHHHHHHHHHHHHHcC------CCEEEECCCc---------C-CcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 111111 111245788899999999999 7777765421 0 1123334567788999988886542
Q ss_pred CC----CCHHHHHHHHHcCCCcEEEechHHh
Q 025135 180 GG----FTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 180 G~----it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
.. +.......+++.| ||.|-.+=.-+
T Consensus 739 ~Hdt~Gla~an~laA~eaG-ad~vD~ai~gl 768 (1143)
T TIGR01235 739 THDTSGIAVASMLAAVEAG-VDVVDVAVDSM 768 (1143)
T ss_pred ECCCCCcHHHHHHHHHHhC-CCEEEecchhh
Confidence 22 2255667888888 99887665444
No 474
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=89.12 E-value=18 Score=33.20 Aligned_cols=129 Identities=13% Similarity=0.059 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDAT 108 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~ 108 (257)
+-.++|.++|.|.|.|-..+ +....+.+.++.+|+. |-. +.+=+... +
T Consensus 91 ~dl~~a~~~gvd~iri~~~~------------------------~e~d~~~~~i~~ak~~-G~~-v~~~l~~s--~---- 138 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATHC------------------------TEADVSEQHIGMAREL-GMD-TVGFLMMS--H---- 138 (333)
T ss_pred HHHHHHHHCCCCEEEEEecc------------------------chHHHHHHHHHHHHHc-CCe-EEEEEEcc--c----
Confidence 34567788899999875533 1123567778887764 432 22222110 1
Q ss_pred CCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC--CcEEEeCCC-C--
Q 025135 109 DSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ--GTFICSGGF-T-- 183 (257)
Q Consensus 109 ~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~G~i-t-- 183 (257)
..+.+...++++.+++.| ++.|.+.... + ...+....+.++.+++.++ +||- .... +
T Consensus 139 -~~~~e~l~~~a~~~~~~G------a~~i~i~DT~----G------~~~P~~v~~~v~~l~~~l~~~i~ig-~H~HnnlG 200 (333)
T TIGR03217 139 -MTPPEKLAEQAKLMESYG------ADCVYIVDSA----G------AMLPDDVRDRVRALKAVLKPETQVG-FHAHHNLS 200 (333)
T ss_pred -CCCHHHHHHHHHHHHhcC------CCEEEEccCC----C------CCCHHHHHHHHHHHHHhCCCCceEE-EEeCCCCc
Confidence 135678889999999999 7777665421 1 1123344566778888876 5543 3333 3
Q ss_pred --HHHHHHHHHcCCCc-----EEEechHHhhCc
Q 025135 184 --RELGIQALAEDGAD-----LVAYGRLFISNP 209 (257)
Q Consensus 184 --~~~a~~~l~~g~~D-----~V~igR~~iadP 209 (257)
...+..+++.| +| +-+||++ -.|+
T Consensus 201 la~ANslaAi~aG-a~~iD~Sl~G~G~~-aGN~ 231 (333)
T TIGR03217 201 LAVANSIAAIEAG-ATRIDASLRGLGAG-AGNA 231 (333)
T ss_pred hHHHHHHHHHHhC-CCEEEeeccccccc-ccCc
Confidence 45667888888 55 4477775 2444
No 475
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=89.04 E-value=8.1 Score=35.12 Aligned_cols=32 Identities=16% Similarity=0.002 Sum_probs=28.5
Q ss_pred CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 025135 174 GTFICSGGFTRELGIQALAEDGADLVAYGRLFI 206 (257)
Q Consensus 174 ~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~i 206 (257)
.|+-++||||++.+.++.+.| +|+|++|....
T Consensus 263 ~~lEaSGGIt~~ni~~yA~tG-VD~Is~Galth 294 (308)
T PLN02716 263 FETEASGNVTLDTVHKIGQTG-VTYISSGALTH 294 (308)
T ss_pred ceEEEECCCCHHHHHHHHHcC-CCEEEeCcccc
Confidence 568899999999999998887 99999998665
No 476
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=88.98 E-value=14 Score=33.59 Aligned_cols=171 Identities=14% Similarity=0.087 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEcc--C
Q 025135 24 IDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSP--A 101 (257)
Q Consensus 24 i~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~--~ 101 (257)
++..++.++.+.+.|..+|-|.+- | .-+|+.|-+-.|---++-.-|++||+++++-.|...+.. +
T Consensus 60 id~l~~~~~~~~~~Gi~~v~lFgv----------~---~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~Y 126 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMPFGI----------S---HHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEY 126 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC----------C---CCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccC
Confidence 455566677888999999998643 2 237888877666677889999999999965345545543 3
Q ss_pred CCCCCCC---C--CC---cHHHHHHHHHHHHhcCCccCCceeEEEeeC---CCc-------ccCCCcCCC--CCCCchhH
Q 025135 102 IDHLDAT---D--SD---PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ---PRY-------TAYGQTESG--RPGTEDEE 161 (257)
Q Consensus 102 ~~~~~~~---~--~~---~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~---~~~-------~~~~~~~~~--~~~~~~~~ 161 (257)
..+..++ + -+ +.+...+.+-...++| +|+|.-+. ++. +..++.... .+..+ ..
T Consensus 127 T~hGHcGil~~g~i~ND~Tl~~L~~~Als~A~AG------ADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaK-ya 199 (322)
T PRK13384 127 TDHGHCGVLHNDEVDNDATVENLVKQSVTAAKAG------ADMLAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAK-FA 199 (322)
T ss_pred CCCCceeeccCCcCccHHHHHHHHHHHHHHHHcC------CCeEecccccccHHHHHHHHHHHCCCCCCceeehhHh-hh
Confidence 3222221 1 11 2333344555667889 77774321 111 001100000 00011 11
Q ss_pred HHHHHHHHHHhC-CcEEEeCCC-----CH---H----HHHHHHHcCCCcEEEechHHhhCchHHHHHHcCC
Q 025135 162 AQLLRTWRRSYQ-GTFICSGGF-----TR---E----LGIQALAEDGADLVAYGRLFISNPDLVLRFKLNA 219 (257)
Q Consensus 162 ~~~~~~ir~~~~-~pvi~~G~i-----t~---~----~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~g~ 219 (257)
..+.-.+|++.+ .|- |.- ++ . +++.-+++| +|+||+ .|.+.-=|+++++++.-
T Consensus 200 S~fYGPFRdAa~Sap~---gDrksYQmdp~n~~eAlre~~~D~~EG-AD~lMV-KPal~YLDIi~~~k~~~ 265 (322)
T PRK13384 200 SSFYGPFRAAVDCELS---GDRKSYQLDYANGRQALLEALLDEAEG-ADILMV-KPGTPYLDVLSRLRQET 265 (322)
T ss_pred hhhcchHHHHhcCCCC---CCcccccCCCCCHHHHHHHHHhhHhhC-CCEEEE-cCCchHHHHHHHHHhcc
Confidence 223345777765 452 442 22 2 233445676 999987 67777789999998743
No 477
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=88.85 E-value=1.9 Score=39.12 Aligned_cols=72 Identities=15% Similarity=0.056 Sum_probs=50.4
Q ss_pred HHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC--CcEEEeCCC-CHHHHHHHHHcCCCc
Q 025135 121 QGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ--GTFICSGGF-TRELGIQALAEDGAD 197 (257)
Q Consensus 121 ~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~G~i-t~~~a~~~l~~g~~D 197 (257)
+...++| ++-|-+++-.-.+.- .-+...+.+.++-+++. +||..-||+ +-.|.-++|.-| +-
T Consensus 238 ~~Ave~G------~~GIIVSNHGgRQlD--------~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALG-Ak 302 (363)
T KOG0538|consen 238 RKAVEAG------VAGIIVSNHGGRQLD--------YVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALG-AK 302 (363)
T ss_pred HHHHHhC------CceEEEeCCCccccC--------cccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcc-cc
Confidence 4456778 777766642211111 11233466677777774 789999999 788999999998 99
Q ss_pred EEEechHHhh
Q 025135 198 LVAYGRLFIS 207 (257)
Q Consensus 198 ~V~igR~~ia 207 (257)
.|.+|||.+.
T Consensus 303 ~VfiGRP~v~ 312 (363)
T KOG0538|consen 303 GVFIGRPIVW 312 (363)
T ss_pred eEEecCchhe
Confidence 9999999884
No 478
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=88.77 E-value=1.1 Score=39.55 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=35.3
Q ss_pred CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 174 GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 174 ~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
++|+.+|+++++.+.+++..-.+|.+.+|++.+ +|+-+.++.
T Consensus 204 ~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl-~~~~f~~ii 245 (250)
T PRK00042 204 VRILYGGSVKPDNAAELMAQPDIDGALVGGASL-KAEDFLAIV 245 (250)
T ss_pred ceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeee-chHHHHHHH
Confidence 678888889999999999998999999999998 665554443
No 479
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=88.73 E-value=5 Score=35.59 Aligned_cols=102 Identities=11% Similarity=0.210 Sum_probs=65.4
Q ss_pred CcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCC-c-hhHHHHHHHHHHHhCCcEEEeCCC-CHHHH
Q 025135 111 DPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGT-E-DEEAQLLRTWRRSYQGTFICSGGF-TRELG 187 (257)
Q Consensus 111 ~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a 187 (257)
++.+...++|+.|.+.|...+ +.++- ...|+.-..+....+.+ . ..-...++++|+.++.||+. .+ +++++
T Consensus 21 Es~e~~~~~A~~lk~~~~~~~--~~~~f--K~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~GlpvvT--eV~~~~~~ 94 (264)
T PRK05198 21 ESRDLALRIAEHLKEITDKLG--IPYVF--KASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPVLT--DVHEPEQA 94 (264)
T ss_pred cCHHHHHHHHHHHHHHHHhcC--CCeEE--eccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEE--EeCCHHHH
Confidence 457778889999988652111 22221 22333211111111112 2 23457788999999999886 55 88888
Q ss_pred HHHHHcCCCcEEEechHHhhCchHHHHHH-cCCC
Q 025135 188 IQALAEDGADLVAYGRLFISNPDLVLRFK-LNAP 220 (257)
Q Consensus 188 ~~~l~~g~~D~V~igR~~iadP~l~~k~~-~g~~ 220 (257)
+.+.+- +|++.+|-=++.|-+|...+. .|+|
T Consensus 95 ~~v~~~--~DilQIgArn~rn~~LL~a~g~t~kp 126 (264)
T PRK05198 95 APVAEV--VDVLQIPAFLCRQTDLLVAAAKTGKV 126 (264)
T ss_pred HHHHhh--CcEEEECchhcchHHHHHHHhccCCe
Confidence 888764 999999998999999988764 3544
No 480
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=88.42 E-value=20 Score=32.91 Aligned_cols=124 Identities=12% Similarity=0.036 Sum_probs=73.6
Q ss_pred HHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCC
Q 025135 30 AALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATD 109 (257)
Q Consensus 30 AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~ 109 (257)
-.++|.++|.|.|.|-..+ ++...+.+.++.+|+. |-. +.+-+... .
T Consensus 93 dl~~a~~~gvd~iri~~~~------------------------~e~~~~~~~i~~ak~~-G~~-v~~~l~~a-------~ 139 (337)
T PRK08195 93 DLKMAYDAGVRVVRVATHC------------------------TEADVSEQHIGLAREL-GMD-TVGFLMMS-------H 139 (337)
T ss_pred HHHHHHHcCCCEEEEEEec------------------------chHHHHHHHHHHHHHC-CCe-EEEEEEec-------c
Confidence 3466778899998875433 1123467778887764 432 22222211 1
Q ss_pred CCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHh--CCcEEEeCCC-C---
Q 025135 110 SDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSY--QGTFICSGGF-T--- 183 (257)
Q Consensus 110 ~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G~i-t--- 183 (257)
..+.+...++++.+++.| ++.|.+.... + ...+......++.+++.+ ++||- .... +
T Consensus 140 ~~~~e~l~~~a~~~~~~G------a~~i~i~DT~----G------~~~P~~v~~~v~~l~~~l~~~i~ig-~H~HnnlGl 202 (337)
T PRK08195 140 MAPPEKLAEQAKLMESYG------AQCVYVVDSA----G------ALLPEDVRDRVRALRAALKPDTQVG-FHGHNNLGL 202 (337)
T ss_pred CCCHHHHHHHHHHHHhCC------CCEEEeCCCC----C------CCCHHHHHHHHHHHHHhcCCCCeEE-EEeCCCcch
Confidence 135778889999999999 7777665421 1 112334456677888888 45543 3333 3
Q ss_pred -HHHHHHHHHcCCCcEE-----EechH
Q 025135 184 -RELGIQALAEDGADLV-----AYGRL 204 (257)
Q Consensus 184 -~~~a~~~l~~g~~D~V-----~igR~ 204 (257)
...+..+++.| +|.| +||++
T Consensus 203 a~ANslaAi~aG-a~~iD~Sl~GlG~~ 228 (337)
T PRK08195 203 GVANSLAAVEAG-ATRIDGSLAGLGAG 228 (337)
T ss_pred HHHHHHHHHHhC-CCEEEecChhhccc
Confidence 45677889888 5544 56664
No 481
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=88.18 E-value=6.5 Score=35.26 Aligned_cols=98 Identities=11% Similarity=0.122 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHHHHhc----CCccCCceeEEEeeCCCcccCCCcCCCCCCCc--hhHHHHHHHHHHHhCCcEEEeCCC-C
Q 025135 111 DPLGLGLAVIQGLNKL----QIDQGAKLTYLHVTQPRYTAYGQTESGRPGTE--DEEAQLLRTWRRSYQGTFICSGGF-T 183 (257)
Q Consensus 111 ~~~~~~~~l~~~L~~~----G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ir~~~~~pvi~~G~i-t 183 (257)
++.+...++|+.|.+. | +.++- .+.|+....+....+.+. ..-...++++|+.++.||+. .+ +
T Consensus 27 Es~e~~~~~A~~lk~~~~~~g------~~~i~--kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvvT--eV~~ 96 (290)
T PLN03033 27 ESEEHILRMAKHIKDISTKLG------LPLVF--KSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVT--DVHE 96 (290)
T ss_pred cCHHHHHHHHHHHHHHHHhCC------CcEEE--EeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEE--eeCC
Confidence 4577788889888875 7 55543 334442112221112222 24457788999999999875 45 7
Q ss_pred HHHHHHHHHcCCCcEEEechHHhhCchHHHHHH-cCCC
Q 025135 184 RELGIQALAEDGADLVAYGRLFISNPDLVLRFK-LNAP 220 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~-~g~~ 220 (257)
+++++.+.+- +|++.+|-=++.|-+|...+. .|++
T Consensus 97 ~~q~~~vae~--~DilQIgAr~~rqtdLL~a~~~tgkp 132 (290)
T PLN03033 97 SSQCEAVGKV--ADIIQIPAFLCRQTDLLVAAAKTGKI 132 (290)
T ss_pred HHHHHHHHhh--CcEEeeCcHHHHHHHHHHHHHccCCe
Confidence 8888877654 899999998889988886654 3444
No 482
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.13 E-value=16 Score=32.31 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=37.3
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 173 QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 173 ~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
++||+.+|++++..+.+++.+-.+|.+.+|++.+.=.++..-+.
T Consensus 202 ~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~ 245 (251)
T COG0149 202 KVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFLAILE 245 (251)
T ss_pred CeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchhHHHHHH
Confidence 67899999999999998888888999999999997667665543
No 483
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=88.07 E-value=10 Score=37.17 Aligned_cols=136 Identities=14% Similarity=0.112 Sum_probs=80.1
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSD 111 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~ 111 (257)
..+.++|.+.|-|.... ..-+++..++-+.+.-.+.+.+.|+..|+. |. -|.++. +.|.+.. ..
T Consensus 88 ea~~~~~~~~v~i~~~~----------Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~-g~---~V~~~~-e~f~D~~-r~ 151 (526)
T TIGR00977 88 QALIKAETPVVTIFGKS----------WDLHVLEALQTTLEENLAMIYDTVAYLKRQ-GD---EVIYDA-EHFFDGY-KA 151 (526)
T ss_pred HHHhcCCCCEEEEEeCC----------CHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CC---eEEEEe-eeeeecc-cC
Confidence 34556777777665433 222455566666666666666777766654 22 233443 2332221 13
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-C----HHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-T----REL 186 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t----~~~ 186 (257)
+.+...++++.+.++| ++.+.+... .+ ...+......++.+++.++.+.+..... + ...
T Consensus 152 ~~~~l~~~~~~a~~aG------ad~i~i~DT----vG------~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvAN 215 (526)
T TIGR00977 152 NPEYALATLATAQQAG------ADWLVLCDT----NG------GTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVAN 215 (526)
T ss_pred CHHHHHHHHHHHHhCC------CCeEEEecC----CC------CcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHH
Confidence 5788899999999999 777766532 11 1123344566778888887665666554 3 445
Q ss_pred HHHHHHcCCCcEEE
Q 025135 187 GIQALAEDGADLVA 200 (257)
Q Consensus 187 a~~~l~~g~~D~V~ 200 (257)
+..+++.| ++.|-
T Consensus 216 slaAv~AG-A~~Vd 228 (526)
T TIGR00977 216 SLLAVEAG-ATMVQ 228 (526)
T ss_pred HHHHHHhC-CCEEE
Confidence 67888888 66553
No 484
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=88.07 E-value=20 Score=32.72 Aligned_cols=163 Identities=17% Similarity=0.132 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhh--HhhHHHHHHHHHHHHhCCCeEEEE
Q 025135 20 IPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIEN--RCRFLMQLVREVIVAIGADRVGVR 97 (257)
Q Consensus 20 I~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~en--R~r~~~eiv~aiR~~vg~~~v~vr 97 (257)
+..++++ -.+++.++.|.|+|.+-.=+ |.|+ ..--| +..|+.+|.+.+++.= -+..+-
T Consensus 102 l~~ll~~--wS~~rike~GadavK~Llyy--------------~pD~--~~~in~~k~a~vervg~eC~a~d--ipf~lE 161 (324)
T PRK12399 102 LPDCLDD--WSAKRIKEEGADAVKFLLYY--------------DVDE--PDEINEQKKAYIERIGSECVAED--IPFFLE 161 (324)
T ss_pred cccccch--hhHHHHHHhCCCeEEEEEEE--------------CCCC--CHHHHHHHHHHHHHHHHHHHHCC--CCeEEE
Confidence 3344443 35778899999999975433 2332 11112 2345555555555431 143443
Q ss_pred EccCCC-CCCCCC----CCcHHHHHHHHHHHHh--cCCccCCceeEEEeeCCCcccCCCcCCCCCC--CchhHHHHHHHH
Q 025135 98 MSPAID-HLDATD----SDPLGLGLAVIQGLNK--LQIDQGAKLTYLHVTQPRYTAYGQTESGRPG--TEDEEAQLLRTW 168 (257)
Q Consensus 98 ls~~~~-~~~~~~----~~~~~~~~~l~~~L~~--~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i 168 (257)
+=.+.. ..+... ....+...+.++.+.+ .| +|.+-+.-|....+......... .........+..
T Consensus 162 ~ltY~~~~~d~~~~~yak~kP~~V~~a~kefs~~~~g------vDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~ 235 (324)
T PRK12399 162 ILTYDEKIADNGSVEYAKVKPHKVNEAMKVFSKPRFG------VDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQ 235 (324)
T ss_pred EeeccCcccccccHHHHhhChHHHHHHHHHhccCCCC------CcEEEEecccccccccccCcccccccHHHHHHHHHHH
Confidence 322210 000000 0012334556666654 56 77777654432211100000000 011111122333
Q ss_pred HHHhCCc-EEEeCCCCHHHHHHHH----HcCCC--cEEEechHHhhCc
Q 025135 169 RRSYQGT-FICSGGFTRELGIQAL----AEDGA--DLVAYGRLFISNP 209 (257)
Q Consensus 169 r~~~~~p-vi~~G~it~~~a~~~l----~~g~~--D~V~igR~~iadP 209 (257)
....++| |+++.|++.+...+.| +.| + ..|..||+.-.++
T Consensus 236 ~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aG-a~fsGvL~GRAtW~~~ 282 (324)
T PRK12399 236 DAATHLPYIYLSAGVSAELFQETLVFAHEAG-AKFNGVLCGRATWAGS 282 (324)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHHHHHHHcC-CCcceEEeehhhhHhh
Confidence 4445788 8899999876655444 445 5 7999999988775
No 485
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=88.03 E-value=6.8 Score=35.04 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=64.6
Q ss_pred CcHHHHHHHHHHHH----hcCCccCCceeEEEeeCCCcccCCCcCCCCCCCch--hHHHHHHHHHHHhCCcEEEeCCC-C
Q 025135 111 DPLGLGLAVIQGLN----KLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTED--EEAQLLRTWRRSYQGTFICSGGF-T 183 (257)
Q Consensus 111 ~~~~~~~~l~~~L~----~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ir~~~~~pvi~~G~i-t 183 (257)
++.+...++|+.|. +.| +.++- ...|+....+....+.+.. .-...++++|+.++.||+. .+ +
T Consensus 27 Es~e~~~~iA~~lk~i~~~~g------~~~~f--K~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvT--eV~~ 96 (281)
T PRK12457 27 ESLDFTLDVCGEYVEVTRKLG------IPFVF--KASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVIT--DVHE 96 (281)
T ss_pred cCHHHHHHHHHHHHHHHHHCC------CcEEe--eeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEE--EeCC
Confidence 45677778888775 577 55432 3344422222211122222 3456788999999999986 55 7
Q ss_pred HHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc-CCC
Q 025135 184 RELGIQALAEDGADLVAYGRLFISNPDLVLRFKL-NAP 220 (257)
Q Consensus 184 ~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~-g~~ 220 (257)
+++++.+.+- +|++.+|-=++.|-+|...+.. |++
T Consensus 97 ~~~~~~~ae~--vDilQIgAr~~rntdLL~a~~~t~kp 132 (281)
T PRK12457 97 VEQAAPVAEV--ADVLQVPAFLARQTDLVVAIAKTGKP 132 (281)
T ss_pred HHHHHHHhhh--CeEEeeCchhhchHHHHHHHhccCCe
Confidence 8888887765 9999999988889898877653 444
No 486
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=87.96 E-value=18 Score=33.12 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=31.5
Q ss_pred HHHHHHH---HhCCc-EEEeCCCCHHHHHHHH----HcCCC--cEEEechHHhhCc
Q 025135 164 LLRTWRR---SYQGT-FICSGGFTRELGIQAL----AEDGA--DLVAYGRLFISNP 209 (257)
Q Consensus 164 ~~~~ir~---~~~~p-vi~~G~it~~~a~~~l----~~g~~--D~V~igR~~iadP 209 (257)
..+.+++ ..++| |+++.|++.+...+.| +.| + ..|..||+.-.++
T Consensus 229 A~~~f~eq~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aG-a~fsGvL~GRAtW~~~ 283 (325)
T TIGR01232 229 AAQHFKDQDAATHLPYIYLSAGVSAELFQETLKFAHEAG-AKFNGVLCGRATWSGA 283 (325)
T ss_pred HHHHHHHHhhccCCCEEEEcCCCCHHHHHHHHHHHHHcC-CCcceEEeehhhhHhh
Confidence 3344554 56788 8899999876655444 345 5 7999999988765
No 487
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=87.93 E-value=26 Score=34.76 Aligned_cols=94 Identities=11% Similarity=0.147 Sum_probs=56.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecccccchh-hhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCC
Q 025135 13 QALQTSEIPEVIDQYRQAALNAIQAGFDGIEIHGAHGYLI-DQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGA 91 (257)
Q Consensus 13 ~~lt~~eI~~ii~~f~~AA~~a~~aGfDgVEIh~a~GyLl-~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~ 91 (257)
..|+.+|.-.+++. ..++||+.||+.+|..|-. -.|+|+. ..|.++.+|+..+.
T Consensus 16 ~~~~t~dkl~ia~~-------L~~~Gv~~IE~~GGatfd~~~~f~~e~------------------~~e~l~~l~~~~~~ 70 (582)
T TIGR01108 16 TRMRTEDMLPIAEK-------LDDVGYWSLEVWGGATFDACIRFLNED------------------PWERLRELKKALPN 70 (582)
T ss_pred ccCCHHHHHHHHHH-------HHHcCCCEEEecCCcccccccccCCCC------------------HHHHHHHHHHhCCC
Confidence 46788877776654 4557999999976554432 2455532 56778888887754
Q ss_pred CeE--EEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeC
Q 025135 92 DRV--GVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQ 141 (257)
Q Consensus 92 ~~v--~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~ 141 (257)
-++ .+|..-.-+|.. .+.+....+++...+.| ++.+.+..
T Consensus 71 ~~l~~L~Rg~N~~G~~~----ypddvv~~~v~~a~~~G------vd~irif~ 112 (582)
T TIGR01108 71 TPLQMLLRGQNLLGYRH----YADDVVERFVKKAVENG------MDVFRIFD 112 (582)
T ss_pred CEEEEEEcccccccccc----CchhhHHHHHHHHHHCC------CCEEEEEE
Confidence 443 334211112221 12233455777788889 78777654
No 488
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=87.92 E-value=10 Score=34.29 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=30.1
Q ss_pred CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCc
Q 025135 174 GTFICSGGFTRELGIQALAEDGADLVAYGRLFISNP 209 (257)
Q Consensus 174 ~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP 209 (257)
+.++++|+|+++.+.++.+.| +|++++|..+..-|
T Consensus 246 ~~ieaSGgI~~~~i~~~a~~g-vD~isvGs~~~~~~ 280 (302)
T cd01571 246 VKIFVSGGLDEEDIKELEDVG-VDAFGVGTAISKAP 280 (302)
T ss_pred eEEEEeCCCCHHHHHHHHHcC-CCEEECCcccCCCC
Confidence 348899999999999999888 99999999886543
No 489
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.78 E-value=17 Score=31.40 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=35.5
Q ss_pred HHHHHHHHHhC-CcEEEeCCCCH--HHHHHHHHcCCCcEEEechHHhh
Q 025135 163 QLLRTWRRSYQ-GTFICSGGFTR--ELGIQALAEDGADLVAYGRLFIS 207 (257)
Q Consensus 163 ~~~~~ir~~~~-~pvi~~G~it~--~~a~~~l~~g~~D~V~igR~~ia 207 (257)
.+++.++..++ ++++.+||+++ +++.+.|+.| +..|++|..++.
T Consensus 147 ~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG-a~avg~Gs~L~~ 193 (222)
T PRK07114 147 GFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG-VTCVGMGSKLIP 193 (222)
T ss_pred HHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC-CEEEEEChhhcC
Confidence 34555665554 67999999976 8999999987 999999999874
No 490
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=87.75 E-value=17 Score=33.31 Aligned_cols=42 Identities=26% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHHHhCCc-EEEeCCCCHHHHHHHH---HcCCCc--EEEechHHhhCc
Q 025135 168 WRRSYQGT-FICSGGFTRELGIQAL---AEDGAD--LVAYGRLFISNP 209 (257)
Q Consensus 168 ir~~~~~p-vi~~G~it~~~a~~~l---~~g~~D--~V~igR~~iadP 209 (257)
.....++| |+++.|++.+...+.| .+.++. .|..||+.-.++
T Consensus 237 ~~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fnGvL~GRAtW~~~ 284 (329)
T PRK04161 237 QEAATHLPYIYLSAGVSAKLFQETLVFAAEAGAQFNGVLCGRATWAGS 284 (329)
T ss_pred HhcccCCCEEEEcCCCCHHHHHHHHHHHHhcCCCcccEEeehhhhhhh
Confidence 33445788 8899999876655444 233476 999999998776
No 491
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=87.62 E-value=19 Score=31.70 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=76.4
Q ss_pred HHHHHHcC----CCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCC
Q 025135 31 ALNAIQAG----FDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLD 106 (257)
Q Consensus 31 A~~a~~aG----fDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~ 106 (257)
.++|.++| +|.|.|..+- |+..+++ .++-+.++-.+.+.++++.+|+. |. -+.+++..
T Consensus 75 v~~a~~~~~~~~~~~i~i~~~~--------s~~~~~~--~~~~~~~~~~~~~~~~i~~a~~~-G~---~v~~~~~~---- 136 (268)
T cd07940 75 IDAAAEALKPAKVDRIHTFIAT--------SDIHLKY--KLKKTREEVLERAVEAVEYAKSH-GL---DVEFSAED---- 136 (268)
T ss_pred HHHHHHhCCCCCCCEEEEEecC--------CHHHHHH--HhCCCHHHHHHHHHHHHHHHHHc-CC---eEEEeeec----
Confidence 34556667 8988886543 2222111 23445555566677777777764 32 23344321
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC---CcEEEeCCC-
Q 025135 107 ATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ---GTFICSGGF- 182 (257)
Q Consensus 107 ~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~---~pvi~~G~i- 182 (257)
. ...+.+....+++.+.++| ++.|.+.... + ...+......++.+|+.++ +|+- ....
T Consensus 137 ~-~~~~~~~~~~~~~~~~~~G------~~~i~l~DT~----G------~~~P~~v~~lv~~l~~~~~~~~i~l~-~H~Hn 198 (268)
T cd07940 137 A-TRTDLDFLIEVVEAAIEAG------ATTINIPDTV----G------YLTPEEFGELIKKLKENVPNIKVPIS-VHCHN 198 (268)
T ss_pred C-CCCCHHHHHHHHHHHHHcC------CCEEEECCCC----C------CCCHHHHHHHHHHHHHhCCCCceeEE-EEecC
Confidence 1 1135778899999999999 7777664421 1 1123344567788888886 4543 2333
Q ss_pred C----HHHHHHHHHcCCCcEE
Q 025135 183 T----RELGIQALAEDGADLV 199 (257)
Q Consensus 183 t----~~~a~~~l~~g~~D~V 199 (257)
| ...+..+++.| +|.|
T Consensus 199 ~~GlA~An~laAi~aG-~~~i 218 (268)
T cd07940 199 DLGLAVANSLAAVEAG-ARQV 218 (268)
T ss_pred CcchHHHHHHHHHHhC-CCEE
Confidence 3 44567888887 6654
No 492
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=87.48 E-value=14 Score=32.73 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCCCCCCCC
Q 025135 32 LNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHLDATDSD 111 (257)
Q Consensus 32 ~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~~~~~~~ 111 (257)
+++.++|.|.|.|-... |..+.+.+.++.+|+. +.++.....+... ...
T Consensus 98 ~~~~~~g~~~iri~~~~------------------------~~~~~~~~~i~~ak~~------G~~v~~~i~~~~~-~~~ 146 (275)
T cd07937 98 EKAAKNGIDIFRIFDAL------------------------NDVRNLEVAIKAVKKA------GKHVEGAICYTGS-PVH 146 (275)
T ss_pred HHHHHcCCCEEEEeecC------------------------ChHHHHHHHHHHHHHC------CCeEEEEEEecCC-CCC
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEE----eCCCCHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFIC----SGGFTRELG 187 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~----~G~it~~~a 187 (257)
+.+...++++.+.+.| ++.|.+.. +-+...+......++.+++.+++|+-. +-|+-...+
T Consensus 147 ~~~~~~~~~~~~~~~G------a~~i~l~D----------T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~ 210 (275)
T cd07937 147 TLEYYVKLAKELEDMG------ADSICIKD----------MAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATY 210 (275)
T ss_pred CHHHHHHHHHHHHHcC------CCEEEEcC----------CCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHH
Q ss_pred HHHHHcCCCcEE
Q 025135 188 IQALAEDGADLV 199 (257)
Q Consensus 188 ~~~l~~g~~D~V 199 (257)
..+++.| |+.|
T Consensus 211 laA~~aG-a~~v 221 (275)
T cd07937 211 LAAAEAG-VDIV 221 (275)
T ss_pred HHHHHhC-CCEE
No 493
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=87.48 E-value=12 Score=34.27 Aligned_cols=116 Identities=10% Similarity=0.092 Sum_probs=61.8
Q ss_pred hHHHHHHHH----HHHHHHHHHc-CCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCe
Q 025135 19 EIPEVIDQY----RQAALNAIQA-GFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADR 93 (257)
Q Consensus 19 eI~~ii~~f----~~AA~~a~~a-GfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~ 93 (257)
.++++++.. .+-++...++ |.|+|.|+=..+.-.+.||||.. |- +-=.-...+|++.+++..+ .+
T Consensus 145 ~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~------f~---efv~P~~krIi~~ik~~~g-~p 214 (321)
T cd03309 145 AAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPAT------FR---EFILPRMQRIFDFLRSNTS-AL 214 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHH------HH---HHHHHHHHHHHHHHHhccC-Cc
Confidence 444444443 3444444566 99999997544444446777642 10 0002345688888887533 23
Q ss_pred EEEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC
Q 025135 94 VGVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ 173 (257)
Q Consensus 94 v~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~ 173 (257)
+.+=... .. ..+...+.+.| ++.+++... . ..+.++++.++
T Consensus 215 iilH~cG----------~~----~~~l~~~~e~g------~dvl~~d~~--------------~-----~dl~eak~~~g 255 (321)
T cd03309 215 IVHHSCG----------AA----ASLVPSMAEMG------VDSWNVVMT--------------A-----NNTAELRRLLG 255 (321)
T ss_pred eEEEeCC----------Cc----HHHHHHHHHcC------CCEEEecCC--------------C-----CCHHHHHHHhC
Confidence 3332221 11 23456677788 777764321 0 01244677777
Q ss_pred CcEEEeCCCC
Q 025135 174 GTFICSGGFT 183 (257)
Q Consensus 174 ~pvi~~G~it 183 (257)
..+...|+++
T Consensus 256 ~k~~l~GNlD 265 (321)
T cd03309 256 DKVVLAGAID 265 (321)
T ss_pred CCeEEEcCCC
Confidence 6666667764
No 494
>PRK02227 hypothetical protein; Provisional
Probab=87.48 E-value=19 Score=31.52 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCC-eEEEEEccCCCCCCC
Q 025135 29 QAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGAD-RVGVRMSPAIDHLDA 107 (257)
Q Consensus 29 ~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~-~v~vrls~~~~~~~~ 107 (257)
+-|..|.++|.|-|++.= -....-|+ ..-.+|++|++.++.. +|+..+.- +..
T Consensus 11 eEA~~Al~~GaDiIDvK~---------------P~~GaLGA-------~~p~vir~Iv~~~~~~~pvSAtiGD---~p~- 64 (238)
T PRK02227 11 EEALEALAGGADIIDVKN---------------PKEGSLGA-------NFPWVIREIVAAVPGRKPVSATIGD---VPY- 64 (238)
T ss_pred HHHHHHHhcCCCEEEccC---------------CCCCCCCC-------CCHHHHHHHHHHhCCCCCceeeccC---CCC-
Confidence 446788899999999752 22334443 3457788888888765 78777752 211
Q ss_pred CCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHH----HHHHh-CCcEEEeC--
Q 025135 108 TDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRT----WRRSY-QGTFICSG-- 180 (257)
Q Consensus 108 ~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----ir~~~-~~pvi~~G-- 180 (257)
.+ .....-+..+...| +||+.+--.... ......+.++. ++... +..|+.++
T Consensus 65 ---~p-~~~~~aa~~~a~~G------vDyVKvGl~~~~-----------~~~~~~~~~~~v~~a~~~~~~~~~vVav~ya 123 (238)
T PRK02227 65 ---KP-GTISLAALGAAATG------ADYVKVGLYGGK-----------TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYA 123 (238)
T ss_pred ---Cc-hHHHHHHHHHHhhC------CCEEEEcCCCCC-----------cHHHHHHHHHHHHHhhhhcCCCCeEEEEEec
Confidence 12 23333344556678 999987321110 11112222222 23222 23455543
Q ss_pred ------CCCHHHHHHHHHcCCCcEEEec
Q 025135 181 ------GFTRELGIQALAEDGADLVAYG 202 (257)
Q Consensus 181 ------~it~~~a~~~l~~g~~D~V~ig 202 (257)
.+.+.+.-+.+.+-++|.+|+=
T Consensus 124 D~~r~~~~~~~~l~~~a~~aGf~g~MlD 151 (238)
T PRK02227 124 DAHRVGSVSPLSLPAIAADAGFDGAMLD 151 (238)
T ss_pred ccccccCCChHHHHHHHHHcCCCEEEEe
Confidence 1235555566666669999994
No 495
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=87.40 E-value=19 Score=31.41 Aligned_cols=86 Identities=7% Similarity=0.063 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCC
Q 025135 25 DQYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDH 104 (257)
Q Consensus 25 ~~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~ 104 (257)
+...+.+..++..++|.||+-.-+ .. ++ --+.+++.++++.....++.+-++.- .
T Consensus 14 ~~~~e~~~~~~~~~~Di~E~RvD~------------------l~----~~-~~~~~~~~~~~e~~~~~~~IfT~R~~--~ 68 (231)
T COG0710 14 AELKEQAEKSKELDADIVELRVDL------------------LE----SN-VEVLEVAKALREKDPDKPLIFTFRTV--K 68 (231)
T ss_pred HHHHHHHHHhhccCCCEEEEeech------------------hc----cc-chHHHHHHHHHHhccCCceEEEEeeh--h
Confidence 444566677888999999975433 21 11 23678888899888766655555421 1
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEee
Q 025135 105 LDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVT 140 (257)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~ 140 (257)
.++....+.+..+++.+.+.+.+ .++|+++.
T Consensus 69 EGG~~~~~~~~~i~ll~~la~~~-----~~d~iDiE 99 (231)
T COG0710 69 EGGEFPGSEEEYIELLKKLAELN-----GPDYIDIE 99 (231)
T ss_pred hcCCCCCCHHHHHHHHHHHHhhc-----CCCEEEEE
Confidence 22222234677778888887763 17888874
No 496
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=87.30 E-value=25 Score=33.26 Aligned_cols=137 Identities=15% Similarity=0.096 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCCEEEecccccchhhhcCCCCcCCcCCCCCCchhhHhhHHHHHHHHHHHHhCCCeEEEEEccCCCCC
Q 025135 26 QYRQAALNAIQAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQLVREVIVAIGADRVGVRMSPAIDHL 105 (257)
Q Consensus 26 ~f~~AA~~a~~aGfDgVEIh~a~GyLl~qFlSp~~N~R~D~yGGs~enR~r~~~eiv~aiR~~vg~~~v~vrls~~~~~~ 105 (257)
.-......+.++|.|.|-|-.+. ...+++..++.+.+.-...+.+.++..|+.- +-++.++. ++.
T Consensus 77 ~~~~~~ea~~~a~~~~i~if~~t----------Sd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g----~~~~~~~E-d~~ 141 (409)
T COG0119 77 AIKRDIEALLEAGVDRIHIFIAT----------SDLHLRYKLKKTREEVLERAVDAVEYARDHG----LEVRFSAE-DAT 141 (409)
T ss_pred hHHhhHHHHHhCCCCEEEEEEcC----------CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC----CeEEEEee-ccc
Confidence 33345556678899988775543 4456777788887777777777777777542 55665553 322
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhC--CcEEEeCCC-
Q 025135 106 DATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQ--GTFICSGGF- 182 (257)
Q Consensus 106 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~G~i- 182 (257)
..+.+...++++.+.+.| ++.|.+... .+ ...+....+.++.+++.++ .+| .....
T Consensus 142 ----rt~~~~l~~~~~~~~~~g------a~~i~l~DT----vG------~~~P~~~~~~i~~l~~~v~~~~~l-~~H~Hn 200 (409)
T COG0119 142 ----RTDPEFLAEVVKAAIEAG------ADRINLPDT----VG------VATPNEVADIIEALKANVPNKVIL-SVHCHN 200 (409)
T ss_pred ----cCCHHHHHHHHHHHHHcC------CcEEEECCC----cC------ccCHHHHHHHHHHHHHhCCCCCeE-EEEecC
Confidence 245778888999999888 777776432 11 0123344567778888876 443 33333
Q ss_pred C----HHHHHHHHHcCCCcEE
Q 025135 183 T----RELGIQALAEDGADLV 199 (257)
Q Consensus 183 t----~~~a~~~l~~g~~D~V 199 (257)
+ ...+..+++.| ||.|
T Consensus 201 D~G~AvANslaAv~aG-a~~v 220 (409)
T COG0119 201 DLGMAVANSLAAVEAG-ADQV 220 (409)
T ss_pred CcchHHHHHHHHHHcC-CcEE
Confidence 3 34556788887 7755
No 497
>PLN02561 triosephosphate isomerase
Probab=87.28 E-value=2.2 Score=37.68 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=35.7
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCchHHHHHH
Q 025135 173 QGTFICSGGFTRELGIQALAEDGADLVAYGRLFISNPDLVLRFK 216 (257)
Q Consensus 173 ~~pvi~~G~it~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~ 216 (257)
+++|+.+|+++++.+.+++....+|.+.+|++.+. |+ +.++.
T Consensus 204 ~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~-~~-F~~ii 245 (253)
T PLN02561 204 TTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK-PE-FIDII 245 (253)
T ss_pred cceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH-HH-HHHHH
Confidence 36788888999999999999999999999999997 67 44543
No 498
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.15 E-value=4.3 Score=34.02 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccCCCcCCCCCCCchhHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHH
Q 025135 112 PLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAYGQTESGRPGTEDEEAQLLRTWRRSYQGTFICSGGF-TRELGIQA 190 (257)
Q Consensus 112 ~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~ 190 (257)
+.+++..+++.+.+.| +.++.+.... ....+.++.+++....-.+..|-+ +.++++.+
T Consensus 22 ~~~~~~~~~~~~~~~G------v~~vqlr~k~---------------~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A 80 (187)
T PRK07455 22 DLELGLQMAEAVAAGG------MRLIEITWNS---------------DQPAELISQLREKLPECIIGTGTILTLEDLEEA 80 (187)
T ss_pred CHHHHHHHHHHHHHCC------CCEEEEeCCC---------------CCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHH
Confidence 4788899999999999 8899886421 112345555666554434555565 78999999
Q ss_pred HHcCCCcEEEech
Q 025135 191 LAEDGADLVAYGR 203 (257)
Q Consensus 191 l~~g~~D~V~igR 203 (257)
++.| +|+|..+-
T Consensus 81 ~~~g-Adgv~~p~ 92 (187)
T PRK07455 81 IAAG-AQFCFTPH 92 (187)
T ss_pred HHcC-CCEEECCC
Confidence 9987 99996654
No 499
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=87.00 E-value=1.5 Score=37.72 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=36.7
Q ss_pred CCcEE--EeCCC-CHHHHHHHHHcCCCcEEEechHHhhCchHHHHHHc
Q 025135 173 QGTFI--CSGGF-TRELGIQALAEDGADLVAYGRLFISNPDLVLRFKL 217 (257)
Q Consensus 173 ~~pvi--~~G~i-t~~~a~~~l~~g~~D~V~igR~~iadP~l~~k~~~ 217 (257)
..||+ +.||+ ||.+|.-+++-| ||.|.+|.+...-+|=+++++.
T Consensus 207 rlPVV~FAaGGvaTPADAALmMQLG-CdGVFVGSgiFks~dP~k~a~a 253 (296)
T KOG1606|consen 207 RLPVVNFAAGGVATPADAALMMQLG-CDGVFVGSGIFKSGDPVKRARA 253 (296)
T ss_pred CCceEEecccCcCChhHHHHHHHcC-CCeEEeccccccCCCHHHHHHH
Confidence 46754 67999 999999998887 9999999999988887777653
No 500
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=86.99 E-value=4.9 Score=39.23 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=68.5
Q ss_pred HHHHHHHHhCCCeE-EEEEccCCCCCCCCCCCcHHHHHHHHHHHHhcCCccCCceeEEEeeCCCcccC-----------C
Q 025135 81 LVREVIVAIGADRV-GVRMSPAIDHLDATDSDPLGLGLAVIQGLNKLQIDQGAKLTYLHVTQPRYTAY-----------G 148 (257)
Q Consensus 81 iv~aiR~~vg~~~v-~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~vd~i~v~~~~~~~~-----------~ 148 (257)
+|+..|+. |- +| +|-|+.. --+.+++.++++.|..-| +.|+.+-.+..++. .
T Consensus 113 Lv~kara~-G~-~I~gvvIsAG--------IP~le~A~ElI~~L~~~G------~~yv~fKPGtIeqI~svi~IAka~P~ 176 (717)
T COG4981 113 LVQKARAS-GA-PIDGVVISAG--------IPSLEEAVELIEELGDDG------FPYVAFKPGTIEQIRSVIRIAKANPT 176 (717)
T ss_pred HHHHHHhc-CC-CcceEEEecC--------CCcHHHHHHHHHHHhhcC------ceeEEecCCcHHHHHHHHHHHhcCCC
Confidence 45555543 22 33 6667642 134788999999998889 88886543222110 0
Q ss_pred -----CcCCCCCCCch-------hHHHHHHHHHHHhCCcEEEeCCC-CHHHHHHHHHcCC----------CcEEEechHH
Q 025135 149 -----QTESGRPGTED-------EEAQLLRTWRRSYQGTFICSGGF-TRELGIQALAEDG----------ADLVAYGRLF 205 (257)
Q Consensus 149 -----~~~~~~~~~~~-------~~~~~~~~ir~~~~~pvi~~G~i-t~~~a~~~l~~g~----------~D~V~igR~~ 205 (257)
...-|+.++.- ....-..++|..-++.|+++||| +++++...|.-.+ +|.+.+|..+
T Consensus 177 ~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaa 256 (717)
T COG4981 177 FPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAA 256 (717)
T ss_pred CceEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhH
Confidence 00011111111 11122356888878889999999 9999999986433 7899999988
Q ss_pred hhC
Q 025135 206 ISN 208 (257)
Q Consensus 206 iad 208 (257)
++-
T Consensus 257 Mat 259 (717)
T COG4981 257 MAT 259 (717)
T ss_pred Hhh
Confidence 863
Done!