RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025136
(257 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 118 bits (297), Expect = 6e-33
Identities = 68/151 (45%), Positives = 99/151 (65%), Gaps = 2/151 (1%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYG 167
+ + IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY
Sbjct: 2 SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYH 61
Query: 168 GFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEAR 226
G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 62 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGE 121
Query: 227 NLVKVTKDCLHKAISVCAPGMEYKKIGKTIQ 257
L ++T++ L+ A+ + PG+ ++IG IQ
Sbjct: 122 RLCRITQESLYLALRMVKPGINLREIGAAIQ 152
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 96.1 bits (238), Expect = 3e-24
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 4/150 (2%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ E+ R + QV +Y + +KPG+T EI + +
Sbjct: 50 DQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLA 109
Query: 169 FPKSVCTSVNECI-CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
FP + D+ L+ D ID +++G D + F + +
Sbjct: 110 FPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDT 166
Query: 228 LVKVTKDCLHKAISVCAPGMEYKKIGKTIQ 257
L+K KD + I + +G+ IQ
Sbjct: 167 LLKAVKDATNTGIKCAGIDVRLCDVGEAIQ 196
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 85.1 bits (209), Expect = 2e-20
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 1/145 (0%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ IE M+ +G+ A L ++ PG T +++ V ++ P+ GYGG
Sbjct: 3 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 62
Query: 169 FPKSVCTSVNECICHGI-PDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
+ + C SVNE + HG+ + ++GD +++DV G +GD + T+ G+ D+ +
Sbjct: 63 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 122
Query: 228 LVKVTKDCLHKAISVCAPGMEYKKI 252
LV+VT++ L KAI + PG+ +
Sbjct: 123 LVRVTREVLEKAIKMIKPGIRLGDV 147
Score = 30.4 bits (67), Expect = 0.16
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 128 QVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYG---GFPKSVCTSVNECICHG 184
+VLE A ++KPGI ++ + + + G G G + G
Sbjct: 129 EVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPNYGTPG 188
Query: 185 IPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEAR-----NLVKVTKD 234
L G T+ I+ V + + D +R + + +T++
Sbjct: 189 --TGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITEN 241
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 80.9 bits (198), Expect = 9e-19
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 6/143 (4%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I +R +G + A A +PG+ ++ +H +GA Y + V +
Sbjct: 5 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGA-----RYPSYNTIVGS 59
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKD 234
N CI H + + DGD + ID GY GD + TF G R + + +
Sbjct: 60 GENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLE 119
Query: 235 CLHKAISVCAPGMEYKKIGKTIQ 257
L ++ + PG ++ +
Sbjct: 120 SLETSLRLYRPGTSILEVTGEVV 142
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 78.3 bits (191), Expect = 6e-18
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
V E+ ++ ++ G + A+V KPGITT E+D ++ + GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD-EARNL 228
P C SVNE + HGIP R + +GD +NIDV+ NGY+ DT +F G+ DD + +
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 229 VKVTKDCLHKAISVCAPGMEY 249
V AI+ PG +
Sbjct: 123 CDVATMAFENAIAKVKPGTKL 143
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 75.4 bits (184), Expect = 5e-17
Identities = 29/146 (19%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
++ IE + + +A + + A + G E+ V ++ NGA F
Sbjct: 2 TKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPA-----FDT 56
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKV 231
+ + + HG+ + +E GD + ID+ N Y+ D + T G +++ R + ++
Sbjct: 57 IIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEI 116
Query: 232 TKDCLHKAISVCAPGMEYKKIGKTIQ 257
+ +A+ PGM K++ +
Sbjct: 117 VLEAQKRAVEAAKPGMTAKELDSIAR 142
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 73.2 bits (178), Expect = 3e-16
Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ +
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAA- 61
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
D+ L++GD + IDV V+++G+ DT+ T G +DE ++ K+
Sbjct: 62 ----HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDEL---MEAAKEA 114
Query: 236 LHKAISVCAPGMEYKKIGK 254
L+ AISV G+E K++GK
Sbjct: 115 LNAAISVARAGVEIKELGK 133
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 72.4 bits (176), Expect = 8e-16
Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 1/141 (0%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSP-LGYGG 168
+ + +R R+A + + E+ Q ++ A +
Sbjct: 2 IKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMD 61
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
+ +N H +R + GD ++++ + GY+ T F D+ L
Sbjct: 62 TWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRL 121
Query: 229 VKVTKDCLHKAISVCAPGMEY 249
+V + + + PG
Sbjct: 122 WQVNVEVHEAGLKLIKPGARC 142
>d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 141
Score = 26.6 bits (59), Expect = 2.0
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 19 VGNRFIHSTQPLNQLFGYNSGKNQVSMQLSRTFSGLAD 56
G R + + ++ YNS + + + ++T S D
Sbjct: 86 YGPRTVTPAM-VEGIYKYNSDRKRFTQIPAKTMSMSVD 122
>d1wpia1 c.47.1.18 (A:1-133) Hypothetical protein YKR049C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 133
Score = 26.4 bits (58), Expect = 2.1
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 7 SLQLQPRLLSSFVGN--RFIHSTQPLNQLFGYNSGKNQVSMQLSRTFSGLADLLF 59
+LQ QPR +S F + I S + L L G S + ++++ F L +
Sbjct: 6 TLQRQPRTISLFTNDIASNIKSQKCLQLLKGDVSHR--FDVEIANRFPTWDQLQY 58
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 26.0 bits (57), Expect = 2.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 189 RALEDGDTINIDVTVYLNG 207
A+E D + ID T ++G
Sbjct: 13 GAVEAEDRVTIDFTGSVDG 31
>d1pk6c_ b.22.1.1 (C:) Complement c1q globular head, C chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 26.1 bits (57), Expect = 2.3
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 191 LEDGDTINIDVTVYLNGYHGDTSATFFCG 219
L+ G+ + + V Y + S + F G
Sbjct: 95 LQVGEEVWLAVNDYYDMVGIQGSDSVFSG 123
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 26.5 bits (58), Expect = 3.2
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 9/115 (7%)
Query: 135 TLVKPGITTDEIDKAVHQMIIDNGA----YPSPLGY-----GGFPKSVCTSVNECICHGI 185
TL+KP T +E+ KA + + PS + + P + T V + +
Sbjct: 9 TLLKPTATLEEVAKAAEEALEYGFYGLCIPPSYVAWVRARYPHAPFRLVTVVGFPLGYQE 68
Query: 186 PDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAI 240
+ +ALE H + ++ E R + + + K I
Sbjct: 69 KEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVI 123
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.7 bits (55), Expect = 5.4
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDN 157
R++ RL +V + + I TD + K + + ID+
Sbjct: 200 PRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 238
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 25.7 bits (56), Expect = 5.6
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 13/116 (11%)
Query: 135 TLVKPGITTDEIDKAVHQMIIDNGA----YPSPLGYGGFPKSVCTSVNECICHGIP---- 186
+KP ++ EI++ V + P + S+ V C G P
Sbjct: 11 AALKPHLSEKEIEEFVLKSEELGIYAVCVNPYHVKL---ASSIAKKVKVCCVIGFPLGLN 67
Query: 187 --DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAI 240
+ E + + ++ + V +E + + + T +HK I
Sbjct: 68 KTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVI 123
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 25.0 bits (54), Expect = 7.6
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 154 IIDNGAYPSPLGYGG--FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTV-YLNGYHG 210
++D G + LGY G P+ + S C I +S + D + V L+ + G
Sbjct: 7 VVDCGTGYTKLGYAGNTEPQFIIPS-----CIAIKESAKVGDQAQRRVMKGVDDLDFFIG 61
Query: 211 D 211
D
Sbjct: 62 D 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.420
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 987,354
Number of extensions: 46821
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 18
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)