Query 025138
Match_columns 257
No_of_seqs 148 out of 1156
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:01:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 1.2E-37 2.7E-42 272.5 18.5 180 42-255 1-183 (261)
2 PRK13911 exodeoxyribonuclease 100.0 8.4E-35 1.8E-39 256.4 19.9 174 42-255 1-176 (250)
3 PRK11756 exonuclease III; Prov 100.0 2E-27 4.3E-32 210.8 19.5 180 42-256 1-190 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 3.5E-27 7.6E-32 207.6 19.7 176 42-255 1-178 (254)
5 TIGR00633 xth exodeoxyribonucl 99.9 9.9E-25 2.2E-29 190.9 19.2 176 42-254 1-180 (255)
6 PRK05421 hypothetical protein; 99.7 1.3E-15 2.8E-20 135.3 14.5 146 39-226 41-195 (263)
7 PRK15251 cytolethal distending 99.6 9.1E-14 2E-18 122.9 16.4 173 38-229 21-200 (271)
8 TIGR03395 sphingomy sphingomye 99.6 3.9E-14 8.3E-19 127.2 13.7 163 42-230 1-194 (283)
9 COG3568 ElsH Metal-dependent h 99.5 2.9E-13 6.2E-18 118.9 12.4 185 42-257 10-226 (259)
10 PF03372 Exo_endo_phos: Endonu 99.5 3.7E-13 7.9E-18 114.1 12.5 151 45-228 1-171 (249)
11 PLN03144 Carbon catabolite rep 99.3 6.9E-11 1.5E-15 115.3 17.1 161 38-228 251-470 (606)
12 KOG2756 Predicted Mg2+-depende 99.3 1E-10 2.2E-15 102.2 12.8 163 28-226 86-256 (349)
13 PTZ00297 pantothenate kinase; 99.2 1.8E-10 3.9E-15 122.2 16.1 169 36-225 5-207 (1452)
14 smart00476 DNaseIc deoxyribonu 99.2 5.8E-10 1.3E-14 99.7 15.6 158 40-228 16-191 (276)
15 KOG1294 Apurinic/apyrimidinic 99.2 1.2E-10 2.5E-15 106.3 9.4 181 40-254 62-256 (335)
16 KOG2338 Transcriptional effect 99.2 1E-09 2.2E-14 103.0 15.7 160 40-229 115-308 (495)
17 KOG3873 Sphingomyelinase famil 99.0 2.2E-09 4.7E-14 97.3 9.7 166 38-230 5-187 (422)
18 smart00128 IPPc Inositol polyp 98.7 3.3E-07 7.2E-12 83.4 14.3 165 41-228 4-196 (310)
19 COG3021 Uncharacterized protei 98.7 1E-07 2.2E-12 85.6 9.5 170 38-252 85-269 (309)
20 PF14529 Exo_endo_phos_2: Endo 98.2 3.8E-06 8.2E-11 64.6 5.4 50 175-233 1-50 (119)
21 COG5239 CCR4 mRNA deadenylase, 97.1 0.0011 2.4E-08 60.7 5.8 44 41-84 30-86 (378)
22 KOG0566 Inositol-1,4,5-triphos 97.0 0.02 4.4E-07 58.3 14.1 160 41-226 538-727 (1080)
23 KOG0620 Glucose-repressible al 94.1 0.063 1.4E-06 50.0 4.3 77 41-144 19-116 (361)
24 COG2374 Predicted extracellula 90.8 12 0.00026 38.0 15.3 171 38-226 460-687 (798)
25 PLN03191 Type I inositol-1,4,5 89.4 1.5 3.2E-05 43.5 7.7 57 168-227 413-483 (621)
26 PTZ00312 inositol-1,4,5-tripho 81.2 3.6 7.9E-05 37.4 5.5 55 174-228 81-143 (356)
27 PLN03191 Type I inositol-1,4,5 54.6 11 0.00024 37.4 3.0 38 42-82 110-150 (621)
28 COG5411 Phosphatidylinositol 5 48.5 37 0.00081 32.5 5.3 50 174-228 166-221 (460)
29 KOG0620 Glucose-repressible al 37.0 19 0.00041 33.7 1.4 19 213-231 221-239 (361)
30 PLN02504 nitrilase 29.2 95 0.0021 28.6 4.7 60 14-83 5-69 (346)
31 TIGR02855 spore_yabG sporulati 26.8 45 0.00096 30.0 2.0 23 58-80 140-162 (283)
32 PF05582 Peptidase_U57: YabG p 24.7 47 0.001 30.0 1.8 22 59-80 142-163 (287)
33 cd07391 MPP_PF1019 Pyrococcus 23.9 93 0.002 25.2 3.3 26 199-224 28-53 (172)
34 KOG1976 Inositol polyphosphate 23.7 82 0.0018 29.0 3.1 59 174-232 170-236 (391)
35 PRK10438 C-N hydrolase family 23.0 1.1E+02 0.0023 26.7 3.7 23 61-83 23-46 (256)
36 PF09949 DUF2183: Uncharacteri 22.6 97 0.0021 23.4 2.9 18 204-221 55-72 (100)
37 cd07587 ML_beta-AS mammalian-l 20.8 1.4E+02 0.003 27.8 4.2 53 31-83 53-115 (363)
38 cd07577 Ph0642_like Pyrococcus 20.5 1.2E+02 0.0026 26.1 3.5 24 61-84 19-42 (259)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-37 Score=272.46 Aligned_cols=180 Identities=28% Similarity=0.532 Sum_probs=154.1
Q ss_pred cEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~ 121 (257)
|||+||||||++.+.+ .+.+++.+++|||||||||+....++|.. .+ ...
T Consensus 1 mkI~SwNVNgiRar~~----~~~~~l~~~~pDVlclQEtK~~~~~fp~~-----------------------~~---~~~ 50 (261)
T COG0708 1 MKIASWNVNGLRARLK----KLLDWLEEEQPDVLCLQETKAQDEQFPRE-----------------------EL---EAL 50 (261)
T ss_pred CeeEEEehhhHHHHHH----HHHHHHHHhCCCEEEEEecccCcccCCHh-----------------------HH---hhC
Confidence 8999999999999884 59999999999999999999998887731 12 127
Q ss_pred CCeEEEEcCCCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccHHHHHHHH
Q 025138 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (257)
Q Consensus 122 gY~~~~~~~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~~~r~~f~ 201 (257)
||+.++..+++|++||||+||.+ |..+..++++. ...+.+||+|.++++.+.|+|+|+|++... ..+++.+|.+|+
T Consensus 51 GY~~~~~~gqKgysGVailsr~~--~~~v~~g~~~~-~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~-~~~k~~yKl~f~ 126 (261)
T COG0708 51 GYHHVFNHGQKGYSGVAILSKKP--PDDVRRGFPGE-EEDDEEGRVIEAEFDGFRVINLYFPNGSSI-GLEKFDYKLRFL 126 (261)
T ss_pred CceEEEecCcCCcceEEEEEccC--chhhhcCCCCC-ccccccCcEEEEEECCEEEEEEEcCCCCCC-CCcchHHHHHHH
Confidence 99766666788999999999986 55777777641 235678999999999999999999999862 246799999999
Q ss_pred HHHHHHHHcC--CCCCEEEEecCCCCCCCccCCCc-ccccCCCCCCCCHHHHhhhhh
Q 025138 202 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHP-EFFAAAKLNGYVPPNKEVLVL 255 (257)
Q Consensus 202 ~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~-~~~~~~~~~~~~~~~r~~~~~ 255 (257)
+.|.+++.++ .+.|+|+|||||++|.+.|+++| +.+.+.+.+||+++||+.|..
T Consensus 127 ~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ 183 (261)
T COG0708 127 DALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRR 183 (261)
T ss_pred HHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHH
Confidence 9999999874 56899999999999999999999 777789999999999999864
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=8.4e-35 Score=256.39 Aligned_cols=174 Identities=33% Similarity=0.648 Sum_probs=145.9
Q ss_pred cEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~ 121 (257)
|||+||||||++.+.+ ..+.++|.+++|||||||||+.+...++ + ...
T Consensus 1 mki~swNVNgir~~~~---~~~~~~l~~~~~DIiclQEtK~~~~~~~--------------------------~---~~~ 48 (250)
T PRK13911 1 MKLISWNVNGLRACMT---KGFMDFFNSVDADVFCIQESKMQQEQNT--------------------------F---EFK 48 (250)
T ss_pred CEEEEEEeCChhHhhh---hhHHHHHHhcCCCEEEEEeecccccccc--------------------------c---ccC
Confidence 7999999999998775 3699999999999999999998865321 1 127
Q ss_pred CCeEEEEcC-CCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccHHHHHHH
Q 025138 122 NYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (257)
Q Consensus 122 gY~~~~~~~-~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~~~r~~f 200 (257)
||..++... .+|++||||++|.+ |..+.++++. ...|.+||+|.++++.+.|+|+|+|+++.. .+++++|.+|
T Consensus 49 gY~~~~~~~~~kgy~GVAi~~k~~--~~~v~~~~~~--~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~~--~~r~~~K~~~ 122 (250)
T PRK13911 49 GYFDFWNCAIKKGYSGVVTFTKKE--PLSVSYGINI--EEHDKEGRVITCEFESFYLVNVYTPNSQQA--LSRLSYRMSW 122 (250)
T ss_pred CceEEEEecccCccceEEEEEcCC--chheEEcCCC--CcccccCCEEEEEECCEEEEEEEecCCCCC--CcchHHHHHH
Confidence 998777543 56799999999985 6667777753 345788999999999999999999998854 3589999999
Q ss_pred HHHHHHHHHcC-CCCCEEEEecCCCCCCCccCCCcccccCCCCCCCCHHHHhhhhh
Q 025138 201 DKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEVLVL 255 (257)
Q Consensus 201 ~~~L~~~l~~~-~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~r~~~~~ 255 (257)
++.|.+++..+ ...++|+|||||++|.+.|+++|+ ...+.+||+|+||+.|-.
T Consensus 123 ~~~~~~~l~~l~~~~~~Ii~GD~Nva~~~~D~~~~~--~~~~~~gf~~~er~~f~~ 176 (250)
T PRK13911 123 EVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPK--TNRKNAGFSDEERGKFSE 176 (250)
T ss_pred HHHHHHHHHhcccCCCEEEEccccCCCChhhccChh--hcCCCCCcCHHHHHHHHH
Confidence 99999999875 357999999999999999999998 447889999999998753
No 3
>PRK11756 exonuclease III; Provisional
Probab=99.96 E-value=2e-27 Score=210.82 Aligned_cols=180 Identities=25% Similarity=0.435 Sum_probs=132.1
Q ss_pred cEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~ 121 (257)
|||+||||+|++.+. ..+.++|++.+|||||||||+.....++. ..+. . .
T Consensus 1 mri~T~Nv~g~~~~~----~~i~~~i~~~~pDIi~LQE~~~~~~~~~~-----------------------~~~~--~-~ 50 (268)
T PRK11756 1 MKFVSFNINGLRARP----HQLEAIIEKHQPDVIGLQETKVHDEMFPL-----------------------EEVE--A-L 50 (268)
T ss_pred CEEEEEEcCCHHHHH----HHHHHHHHhcCCCEEEEEecccccccCCH-----------------------HHHH--h-c
Confidence 799999999987655 46999999999999999999876543221 0111 1 6
Q ss_pred CCeEEEEcCCCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeC----CEEEEEEecCCCCCCCccccHHHH
Q 025138 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRR 197 (257)
Q Consensus 122 gY~~~~~~~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~----~~~i~~vY~P~~~~~~~~~~~~~r 197 (257)
||.+++. +..+++|||||||++ +..+...++. ...+.++|+|.+++. .+.|+|+|+|++....+..++..|
T Consensus 51 gy~~~~~-~~~~~~GvailSr~p--~~~~~~~~~~--~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r 125 (268)
T PRK11756 51 GYHVFYH-GQKGHYGVALLSKQT--PIAVRKGFPT--DDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAK 125 (268)
T ss_pred CCEEEEe-CCCCCCEEEEEECCC--hHHeEECCCC--ccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHH
Confidence 8987765 455788999999996 3334444432 123456889988873 699999999988653333456678
Q ss_pred HHHHHHHHHHHHcC--CCCCEEEEecCCCCCCCccCCCccc----ccCCCCCCCCHHHHhhhhhc
Q 025138 198 RKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEF----FAAAKLNGYVPPNKEVLVLL 256 (257)
Q Consensus 198 ~~f~~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~----~~~~~~~~~~~~~r~~~~~~ 256 (257)
.+|++.|.+++.+. .+.|+|||||||+.+.+.|+.+++. +-....++|+++||+-|..+
T Consensus 126 ~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~~~l 190 (268)
T PRK11756 126 RQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLDRL 190 (268)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHHHHHHHHH
Confidence 88999999888763 4679999999999999999976542 11245789999999987543
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.95 E-value=3.5e-27 Score=207.61 Aligned_cols=176 Identities=27% Similarity=0.553 Sum_probs=136.3
Q ss_pred cEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~ 121 (257)
|||+||||+|++... ..+..+|..++|||||||||+.....++ ..+. ...
T Consensus 1 mri~t~Ni~g~~~~~----~~~~~~l~~~~~DIi~LQE~~~~~~~~~------------------------~~~~--~~~ 50 (254)
T TIGR00195 1 MKIISWNVNGLRARL----HKGLAWLKENQPDVLCLQETKVQDEQFP------------------------LEPF--HKE 50 (254)
T ss_pred CEEEEEEcCcHHHhH----HHHHHHHHhcCCCEEEEEecccchhhCC------------------------HHHh--hcC
Confidence 799999999988665 4589999999999999999987643221 0111 126
Q ss_pred CCeEEEEcCCCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccHHHHHHHH
Q 025138 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (257)
Q Consensus 122 gY~~~~~~~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~~~r~~f~ 201 (257)
||..+++.. .+.+||||++|.+ |+.+...++. ...+.++|++.+++.++.|+|+|+|+++.. ..+++.+|.+|+
T Consensus 51 g~~~~~~~~-~g~~Gvailsr~~--~~~~~~~~~~--~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~-~~~~~~~r~~~~ 124 (254)
T TIGR00195 51 GYHVFFSGQ-KGYSGVAIFSKEE--PLSVRRGFGV--EEEDAEGRIIMAEFDSFLVINGYFPNGSRD-DSEKLPYKLQWL 124 (254)
T ss_pred CcEEEEecC-CCcceEEEEEcCC--cceEEECCCC--cccccCCCEEEEEECCEEEEEEEccCCCCC-CCccHHHHHHHH
Confidence 888777644 5778999999964 5555544432 234578999999999999999999996532 235677899999
Q ss_pred HHHHHHHHcC--CCCCEEEEecCCCCCCCccCCCcccccCCCCCCCCHHHHhhhhh
Q 025138 202 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEVLVL 255 (257)
Q Consensus 202 ~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~r~~~~~ 255 (257)
+.|.+++.+. .+.|+|+|||||+.+.+.|+.++. ...+.+||+++||+.|..
T Consensus 125 ~~l~~~~~~~~~~~~pvIi~GDfN~~~~~~d~~~~~--~~~~~~~~~~~e~~~~~~ 178 (254)
T TIGR00195 125 EALQNYLEKLVDKDKPVLICGDMNIAPTEIDLHSPD--ENRNHTGFLPEEREWLDR 178 (254)
T ss_pred HHHHHHHHHHHhcCCcEEEEeecccCCChhhccChh--hcCCCcCcChHHHHHHHH
Confidence 9999998864 457999999999999999998877 456788999999998753
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=9.9e-25 Score=190.93 Aligned_cols=176 Identities=29% Similarity=0.552 Sum_probs=128.9
Q ss_pred cEEEEEeCCcchhhhhcCchHH-HHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEF-SNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l-~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~ 120 (257)
|||+||||+|++...+ .+ .++|...+|||||||||+.....+. + .+. ..
T Consensus 1 lri~t~Nv~g~~~~~~----~~~~~~l~~~~~DIv~LQE~~~~~~~~~----------~--------------~~~--~~ 50 (255)
T TIGR00633 1 MKIISWNVNGLRARLH----KLFLDWLKEEQPDVLCLQETKVADEQFP----------A--------------ELF--EE 50 (255)
T ss_pred CEEEEEecccHHHHhh----ccHHHHHHhcCCCEEEEEeccCchhhCC----------H--------------hHh--cc
Confidence 7999999999987664 35 9999999999999999987642211 0 110 12
Q ss_pred CCCeEEEEcCC-CCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccHHHHHH
Q 025138 121 KNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 199 (257)
Q Consensus 121 ~gY~~~~~~~~-~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~~~r~~ 199 (257)
.||..++.... .+.+|+||++|+++ ..+..+++. ...+.++|++.+++.++.|+++|+|++.... .+++++|.+
T Consensus 51 ~g~~~~~~~~~~~~~~G~ailsr~~~--~~~~~~~~~--~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~-~~~~~~r~~ 125 (255)
T TIGR00633 51 LGYHVFFHGAKSKGYSGVAILSKVEP--LDVRYGFGG--EEHDEEGRVITAEFDGFTVVNVYVPNGGSRG-LERLEYKLQ 125 (255)
T ss_pred CCceEEEeecccCCcceEEEEEcCCc--ceEEECCCC--CcccCCCcEEEEEECCEEEEEEEccCCCCCC-chhHHHHHH
Confidence 68887665433 36789999999863 233333332 2345678999888899999999999876321 235567888
Q ss_pred HHHHHHHHHHcC--CCCCEEEEecCCCCCCCccCCCcccccCCCCCCCCHHHHhhhh
Q 025138 200 WDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEVLV 254 (257)
Q Consensus 200 f~~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~r~~~~ 254 (257)
|++.+.+.+.+. .+.|+|+|||||+.+...|+.+++ ...+.+++++.+|..|-
T Consensus 126 ~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~ 180 (255)
T TIGR00633 126 FWDALFQYYEKELDAGKPVIICGDMNVAHTEIDLGNPK--ENKGNAGFTPEEREWFD 180 (255)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeecccCCChHHccChh--hcCCCCCcCHHHHHHHH
Confidence 888887766542 467999999999999999998776 44677889998887664
No 6
>PRK05421 hypothetical protein; Provisional
Probab=99.67 E-value=1.3e-15 Score=135.27 Aligned_cols=146 Identities=17% Similarity=0.173 Sum_probs=85.2
Q ss_pred CCCcEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 025138 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (257)
Q Consensus 39 ~~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~ 118 (257)
.+.|||+||||++...... ......+ ..+||||||||+..... .. .+ ...
T Consensus 41 ~~~lri~t~NI~~~~~~~~---~~~l~~l-~~~~DiI~LQEv~~~~~-~~-------~~--------------~~~---- 90 (263)
T PRK05421 41 EERLRLLVWNIYKQQRAGW---LSVLKNL-GKDADLVLLQEAQTTPE-LV-------QF--------------ATA---- 90 (263)
T ss_pred CCceeEEEEEccccccccH---HHHHHHh-ccCCCEEEEEecccCcc-hH-------HH--------------hhc----
Confidence 4689999999998875422 2344444 89999999999975432 00 00 011
Q ss_pred CCCCCeEEE--Ec-CCCCcceEEEEEccCCCcceeeecCcccccCCCCCCC-EEEEEe---C--CEEEEEEecCCCCCCC
Q 025138 119 PFKNYQIWW--SL-ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF---E--TFYLLNTYAPNNGWKE 189 (257)
Q Consensus 119 ~~~gY~~~~--~~-~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr-~i~v~~---~--~~~i~~vY~P~~~~~~ 189 (257)
.||.+.+ .. ...+.+|+||+||+++. .+ ..+.. ....-...| ++.+++ + .+.|+|+|+++....
T Consensus 91 --~~~~~~~~~~~~~~~~~~GvaiLSR~pi~--~~-~~~~~-~~~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~- 163 (263)
T PRK05421 91 --NYLAADQAPAFVLPQHPSGVMTLSKAHPV--YC-CPLRE-REPWLRLPKSALITEYPLPNGRTLLVVNIHAINFSLG- 163 (263)
T ss_pred --ccchHHhccccccCCCccceeEeeecccc--ee-eccCC-CCccccCcceeEEEEEEeCCCCEEEEEEECccccCcC-
Confidence 2333211 11 13357899999999632 21 22221 001111234 334443 2 489999999754321
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCCCEEEEecCCCCC
Q 025138 190 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSH 226 (257)
Q Consensus 190 ~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~ 226 (257)
...+...++.|.+++... ..|+|+|||||+..
T Consensus 164 ----~~~r~~q~~~l~~~~~~~-~~p~Il~GDFN~~~ 195 (263)
T PRK05421 164 ----VDVYSKQLEPIGDQIAHH-SGPVILAGDFNTWS 195 (263)
T ss_pred ----hHHHHHHHHHHHHHHHhC-CCCEEEEcccccCc
Confidence 122455667777777654 57999999999854
No 7
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.58 E-value=9.1e-14 Score=122.87 Aligned_cols=173 Identities=13% Similarity=0.177 Sum_probs=103.5
Q ss_pred CCCCcEEEEEeCCcchhhhhcCch-HHHHHHhhc-CCcEEEEecccCCCCCCCCCCccccccchh-hhhhHHHHHHHHHh
Q 025138 38 KKDPLKFVTWNANSLLLRVKNNWP-EFSNFITTF-DPDVIALQEVRMPAAGSKDAPKNHQELKDD-TKASREEKLILMRA 114 (257)
Q Consensus 38 ~~~~lrIiTwNv~gl~~~~~~~~~-~l~~~l~~~-~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~ 114 (257)
.....+++|||++|........|. .++.++... ++||+++||+-..+....... ..+... ..-+..|.++ .
T Consensus 21 ~~~~~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DIla~QEags~p~~a~~~~---~~~~~~g~~~~v~ey~w---~ 94 (271)
T PRK15251 21 NLEDYKVATWNLQGSSASTESKWNVNVRQLLSGENPADILMVQEAGSLPSSAVPTG---RHVQPGGVGIPIDEYTW---N 94 (271)
T ss_pred ccccceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCEEEEEecCCCcccccccc---ccccccccccCcccEEE---E
Confidence 446789999999998654443454 688998875 599999999964432100000 000000 0000111111 1
Q ss_pred hCCCCCCCCeEEEEcC---CCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCcc
Q 025138 115 LSSPPFKNYQIWWSLA---DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEE 191 (257)
Q Consensus 115 L~~~~~~gY~~~~~~~---~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~ 191 (257)
|+....+++.+++..+ ..+..|+||+||.+ +.. .+.++. +......++.++++++.++++|+...+..+
T Consensus 95 l~~~srpgm~YiY~~aiD~~ggr~glAIlSr~~--a~~-~~~l~~---p~~~~Rpilgi~i~~~~ffstH~~a~~~~d-- 166 (271)
T PRK15251 95 LGTRSRPNQVYIYYSRVDVGANRVNLAIVSRRR--ADE-VIVLRP---PTVASRPIIGIRIGNDVFFSIHALANGGTD-- 166 (271)
T ss_pred ccCccCCCceEEEEecccCCCCceeEEEEeccc--ccc-eEEecC---CCCcccceEEEEecCeEEEEeeecCCCCcc--
Confidence 1100115666555432 23567999999996 332 233331 122344588899999999999998874321
Q ss_pred ccHHHHHHHHHHHHHHHH-cCCCCCEEEEecCCCCCCCc
Q 025138 192 NSFQRRRKWDKRIQEFVL-QCSGKPLIWCGDLNVSHEEI 229 (257)
Q Consensus 192 ~~~~~r~~f~~~L~~~l~-~~~~~pvIl~GDFN~~~~~~ 229 (257)
+.+..+.+.++.. .....||++|||||..|++.
T Consensus 167 -----a~aiV~~I~~~f~~~~~~~pw~I~GDFNr~P~sl 200 (271)
T PRK15251 167 -----AGAIVRAVHNFFRPNMRHINWMIAGDFNRSPDRL 200 (271)
T ss_pred -----HHHHHHHHHHHHhhccCCCCEEEeccCCCCCcch
Confidence 4456677777775 33347999999999988776
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.57 E-value=3.9e-14 Score=127.20 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=90.2
Q ss_pred cEEEEEeCCcchhh------hhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 025138 42 LKFVTWNANSLLLR------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (257)
Q Consensus 42 lrIiTwNv~gl~~~------~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L 115 (257)
|||+||||+.+... ...+.+.+...+...++|||||||+...... ..| ++.|
T Consensus 1 lkVmtyNv~~l~~~~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~--------~~l--------------~~~L 58 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFDTSAS--------KRL--------------LDNL 58 (283)
T ss_pred CeEEEEEeeeecccccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHH--------HHH--------------HHHH
Confidence 68999999853211 1112256777777889999999999643210 011 1222
Q ss_pred CCCCCCCCeEEEEc---------------CCCCcceEEEEEccCCCcceeeecCcccccCCC--CCCCEEEEEeC----C
Q 025138 116 SSPPFKNYQIWWSL---------------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE--PDGRVILAEFE----T 174 (257)
Q Consensus 116 ~~~~~~gY~~~~~~---------------~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d--~~gr~i~v~~~----~ 174 (257)
+. . .+|...+.. .....+|++||||+|+.... ...++. ....+ ....++.+++. .
T Consensus 59 ~~-~-yp~~~~~~g~~~~g~~~~~g~~~~~~~~~~G~~iLSr~Pi~~~~-~~~f~~-~~~~d~~~~kg~l~a~i~~~g~~ 134 (283)
T TIGR03395 59 RE-E-YPYQTDVIGRSKKGWDKTLGNYSSSALEDGGVAIVSKWPIEEKI-QYIFNK-GCGADNLSNKGFAYVKINKNGKK 134 (283)
T ss_pred Hh-h-CCceEeecccccccchhccccccccCccCCEEEEEECCCccccE-EEEccC-CCCCccccCCceEEEEEecCCeE
Confidence 10 1 222221100 01235699999999753221 111211 00011 12235555552 5
Q ss_pred EEEEEEecCCCCCCCc-cccHHHHHHHHHHHHHHHHcC---CCCCEEEEecCCCCCCCcc
Q 025138 175 FYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEID 230 (257)
Q Consensus 175 ~~i~~vY~P~~~~~~~-~~~~~~r~~f~~~L~~~l~~~---~~~pvIl~GDFN~~~~~~D 230 (257)
+.|+++|+........ ......|..+++.|.+++... .+.|+|||||||+.+.+.+
T Consensus 135 ~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~s~~ 194 (283)
T TIGR03395 135 FHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKGSNE 194 (283)
T ss_pred EEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCCCHH
Confidence 8999999975432100 011245777788898888652 2468999999999886643
No 9
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.49 E-value=2.9e-13 Score=118.87 Aligned_cols=185 Identities=19% Similarity=0.249 Sum_probs=106.3
Q ss_pred cEEEEEeCCcchhh-hhc-CchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 025138 42 LKFVTWNANSLLLR-VKN-NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (257)
Q Consensus 42 lrIiTwNv~gl~~~-~~~-~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~ 119 (257)
++|+||||+..... .++ ....+...+....+|||||||+........ ..+.++.+ .....
T Consensus 10 ~~v~TyNih~~~~~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r------~~~~~~~~--------~~~~~---- 71 (259)
T COG3568 10 FKVLTYNIHKGFGAFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHR------DGLLDLPH--------LLGRL---- 71 (259)
T ss_pred eEEEEEEEEEccCccCceecHHHHHHHHHhhccCeeeeecccccccccc------cccchhHH--------HHHHh----
Confidence 89999999865443 221 347899999999999999999976432111 11111110 01111
Q ss_pred CCCCeEEEEc------CCCCcceEEEEEccCCCcceeeecCcccccCCCCCCC-EEEEEe-----CCEEEEEEecCCCCC
Q 025138 120 FKNYQIWWSL------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF-----ETFYLLNTYAPNNGW 187 (257)
Q Consensus 120 ~~gY~~~~~~------~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr-~i~v~~-----~~~~i~~vY~P~~~~ 187 (257)
.+..+.|+. ...+..|++|+|+.++.-+ -...++. ....+.| ++.+++ +++.|+|+|+--..
T Consensus 72 -~~~~~~~~~~~~~a~~~~~~~GnaiLS~~pi~~v-~~~~lp~---~~~~~~Rgal~a~~~~~~g~~l~V~~~HL~l~~- 145 (259)
T COG3568 72 -GLAPYWWSGAAFGAVYGEGQHGNAILSRLPIRDV-ENLALPD---PTGLEPRGALLAEIELPGGKPLRVINAHLGLSE- 145 (259)
T ss_pred -cCCccccchhhhhhhcccceeeeEEEecCcccch-hhccCCC---CCCCCCceeEEEEEEcCCCCEEEEEEEeccccH-
Confidence 222222211 1235779999998853111 1112331 1123445 455544 27999999995221
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCCCEEEEecCCCCCCCccCCCccc------------c---cC---CCCCCCCHHH
Q 025138 188 KEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEF------------F---AA---AKLNGYVPPN 249 (257)
Q Consensus 188 ~~~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~~D~~~~~~------------~---~~---~~~~~~~~~~ 249 (257)
+.|.++++.|.+.+.-....|+|+|||||+.+.+.++..... + .. ...++.+|..
T Consensus 146 -------~~R~~Q~~~L~~~~~l~~~~p~vl~GDFN~~p~s~~yr~~~~~~~~~~~~~~~~~~~a~~~~~~tfps~~p~l 218 (259)
T COG3568 146 -------ESRLRQAAALLALAGLPALNPTVLMGDFNNEPGSAEYRLAARSPLNAQAALTGAFAPAVGRTIRTFPSNTPLL 218 (259)
T ss_pred -------HHHHHHHHHHHhhccCcccCceEEEccCCCCCCCccceeccCCchhhccccccccCcccCcccCCCCCCCccc
Confidence 235566676766322113349999999998887766622110 0 00 2667788999
Q ss_pred HhhhhhcC
Q 025138 250 KEVLVLLS 257 (257)
Q Consensus 250 r~~~~~~~ 257 (257)
|.++|++|
T Consensus 219 riD~Ifvs 226 (259)
T COG3568 219 RLDRIFVS 226 (259)
T ss_pred cccEEEec
Confidence 99999876
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.49 E-value=3.7e-13 Score=114.12 Aligned_cols=151 Identities=25% Similarity=0.393 Sum_probs=75.0
Q ss_pred EEEeCCcchhhhh--cCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCCC
Q 025138 45 VTWNANSLLLRVK--NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122 (257)
Q Consensus 45 iTwNv~gl~~~~~--~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~g 122 (257)
+||||++...+.. .....+.++|..++||||||||++..... ..+ ...+. ...+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~--------~~~--------------~~~~~--~~~~ 56 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLS--------ELL--------------EEQLR--GYLG 56 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHH--------HHH--------------HHHHH--TCTT
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhh--------hhh--------------hhhcc--cccc
Confidence 6999999432210 01146999999999999999999854210 001 11222 1133
Q ss_pred Ce-EEEEcCCC----CcceEEEEEccCCCcceeeecCcccccCCCCCCCEEE-----------EE--eCCEEEEEEecCC
Q 025138 123 YQ-IWWSLADS----KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL-----------AE--FETFYLLNTYAPN 184 (257)
Q Consensus 123 Y~-~~~~~~~~----~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~-----------v~--~~~~~i~~vY~P~ 184 (257)
+. ..+..... +..|++|++|.++... ....... .......+. +. -.++.|+++|+|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~H~~~ 131 (249)
T PF03372_consen 57 YYGSFWPGNSPPSDAGGYGVAILSRSPIFSS-VSYVFSL----FSKPGIRIFRRSSKSKGIVPVSINGKPITVVNVHLPS 131 (249)
T ss_dssp HEEEEEETSSSTTCSSSEEEEEEESSCCCEE-EEEEEEE----ESSSTTCEEEEEEEEEEEEEEEEETEEEEEEEEETTS
T ss_pred cccceeccccccccccCceEEEEEccccccc-ccccccc----ccccccccccccccccccccccccceEEEeeeccccc
Confidence 23 33322221 2469999999964211 1111110 011111110 11 1257899999987
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHcCCCCCEEEEecCCCCCCC
Q 025138 185 NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 185 ~~~~~~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~ 228 (257)
... .+..+..++++.+..........|+|||||||+.+.+
T Consensus 132 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 132 SND----ERQEQWRELLARIQKIYADNPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHTSSCCEEEEEEE-SS-BSS
T ss_pred cch----hhhhhhhhhhhhhhhcccccccceEEEEeecccCCcc
Confidence 432 1111112334444333332223479999999988754
No 11
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.32 E-value=6.9e-11 Score=115.25 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=88.2
Q ss_pred CCCCcEEEEEeCCcchh--------------hhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhh
Q 025138 38 KKDPLKFVTWNANSLLL--------------RVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKA 103 (257)
Q Consensus 38 ~~~~lrIiTwNv~gl~~--------------~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~ 103 (257)
....+||+||||..-.. ....++..|.+.|..++||||||||+.... +.+.+
T Consensus 251 ~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~------------~~d~~-- 316 (606)
T PLN03144 251 SAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDH------------FEEFF-- 316 (606)
T ss_pred CCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHH------------HHHHH--
Confidence 35689999999974210 001123789999999999999999995321 11100
Q ss_pred hHHHHHHHHHhhCCCCCCCCeEEEEcCC--------CCcceEEEEEccC-CCccee---eec---Cccccc------CCC
Q 025138 104 SREEKLILMRALSSPPFKNYQIWWSLAD--------SKYAGTALLVKKC-FQPKKV---SFS---LEKTAL------KYE 162 (257)
Q Consensus 104 ~~~~~~~~~~~L~~~~~~gY~~~~~~~~--------~~~~GVAIlsr~~-l~p~~v---~~~---l~~~~~------~~d 162 (257)
...|. . .||..++.... .+..|+|||+|.. |..+.. .+. +..... ..+
T Consensus 317 --------~p~L~--~-~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~ 385 (606)
T PLN03144 317 --------APELD--K-HGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKA 385 (606)
T ss_pred --------Hhhhh--h-cCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchh
Confidence 11232 1 68987664321 1346999999885 332211 010 000000 001
Q ss_pred CCCCE------EEE--EeC-------------CEEEEEEecCCCCCCCccccHHHHHHHHHHHHHHHHcC---CCCCEEE
Q 025138 163 PDGRV------ILA--EFE-------------TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIW 218 (257)
Q Consensus 163 ~~gr~------i~v--~~~-------------~~~i~~vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~---~~~pvIl 218 (257)
.-.|+ +.+ +.. .+.|+|+|+-..... . ..|..+...|.+.+++. ...|+|+
T Consensus 386 ~l~Rl~kdNVAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~-~----dvRl~Q~~~Ll~~l~~~~~~~~~PvIl 460 (606)
T PLN03144 386 ALNRLLKDNVALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQEL-K----DVKLWQVHTLLKGLEKIAASADIPMLV 460 (606)
T ss_pred hhhhhccCcEEEEEEEEEecccccccCCCCccEEEEEEeeeccCCcc-c----hhHHHHHHHHHHHHHHHhhcCCCceEE
Confidence 11121 122 221 278999998443321 1 12444455555555542 3579999
Q ss_pred EecCCCCCCC
Q 025138 219 CGDLNVSHEE 228 (257)
Q Consensus 219 ~GDFN~~~~~ 228 (257)
|||||+.+++
T Consensus 461 cGDFNS~P~S 470 (606)
T PLN03144 461 CGDFNSVPGS 470 (606)
T ss_pred eccCCCCCCC
Confidence 9999998865
No 12
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.25 E-value=1e-10 Score=102.24 Aligned_cols=163 Identities=22% Similarity=0.307 Sum_probs=97.7
Q ss_pred ccccCCCCCCCCCCcEEEEEeCCcchhh--hhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhH
Q 025138 28 TTETSSEENSKKDPLKFVTWNANSLLLR--VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASR 105 (257)
Q Consensus 28 ~~~~~~~~~~~~~~lrIiTwNv~gl~~~--~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (257)
+...++.+......+.+++||+.|+... ..++ .+++.+|+.++||||||||+-...-.
T Consensus 86 ~s~~~T~ed~~g~~~S~~~WnidgLdln~l~~RM-rAv~H~i~l~sPdiiflQEV~p~~y~------------------- 145 (349)
T KOG2756|consen 86 TSKISTSEDTQGSMFSLITWNIDGLDLNNLSERM-RAVCHYLALYSPDVIFLQEVIPPYYS------------------- 145 (349)
T ss_pred ccccCChhhhcccEEEEEEeeccccccchHHHHH-HHHHHHHHhcCCCEEEEeecCchhhH-------------------
Confidence 3334444444556689999999997643 1111 57999999999999999999654310
Q ss_pred HHHHHHHHhhCCCCCCCCeEEEEcCCCCcceEEEEEccCCCccee-eecCcccccCCCCCCC---EEEEEeC--CEEEEE
Q 025138 106 EEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV-SFSLEKTALKYEPDGR---VILAEFE--TFYLLN 179 (257)
Q Consensus 106 ~~~~~~~~~L~~~~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~~v-~~~l~~~~~~~d~~gr---~i~v~~~--~~~i~~ 179 (257)
.++.+. ..|..++ ....++.|.+++..+.+...+. ...++ -...+| ++.++++ .+.+.+
T Consensus 146 -----~~~K~~----s~y~i~~-~~~~~~~~~~~l~~s~~~Vks~~~i~F~-----NS~M~R~L~I~Ev~v~G~Kl~l~t 210 (349)
T KOG2756|consen 146 -----YLKKRS----SNYEIIT-GHEEGYFTAIMLKKSRVKVKSQEIIPFP-----NSKMMRNLLIVEVNVSGNKLCLMT 210 (349)
T ss_pred -----HHHHhh----hheeEEE-eccceeeeeeeeehhhcCccccceeccC-----cchhhheeEEEEEeecCceEEEEe
Confidence 123331 3444443 3445677888887664422211 11222 223455 3445565 577888
Q ss_pred EecCCCCCCCccccHHHHHHHHHHHHHHHHcCCCCCEEEEecCCCCC
Q 025138 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSH 226 (257)
Q Consensus 180 vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~ 226 (257)
.|+-+...+.+....+++ .-++..++.|..+.+..||++||.|-..
T Consensus 211 sHLEStr~h~P~r~~qF~-~~~~k~~EaIe~lPnA~ViFGGD~NlrD 256 (349)
T KOG2756|consen 211 SHLESTRGHAPERMNQFK-MVLKKMQEAIESLPNATVIFGGDTNLRD 256 (349)
T ss_pred ccccCCCCCChHHHHHHH-HHHHHHHHHHHhCCCceEEEcCcccchh
Confidence 898776654321111111 2245567777777888999999999643
No 13
>PTZ00297 pantothenate kinase; Provisional
Probab=99.23 E-value=1.8e-10 Score=122.17 Aligned_cols=169 Identities=15% Similarity=0.187 Sum_probs=88.4
Q ss_pred CCCCCCcEEEEEeCCcchhhh-hcCchHHHHHHhhc-CCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHH
Q 025138 36 NSKKDPLKFVTWNANSLLLRV-KNNWPEFSNFITTF-DPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMR 113 (257)
Q Consensus 36 ~~~~~~lrIiTwNv~gl~~~~-~~~~~~l~~~l~~~-~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 113 (257)
......+||+|||++.+.... ....+++..+|+.. ++|||||||+-.... ++. + ...|.. .+.. +..
T Consensus 5 ~~~~~~l~VlTyNv~~~~~~~~~~~~~ri~~~i~~l~~~DIv~lQEvf~~~~-~~~-~-~~~~~~-----~~~~---~~~ 73 (1452)
T PTZ00297 5 DAGCAQARVLSYNFNILPRGCGGFQHERIETFLASVDAYDVVLLQEVYAASV-LPY-F-LQKQLC-----FQKM---LVD 73 (1452)
T ss_pred cCCCCceEEEEEEccccCCCcccccHHHHHHHHHhccCCCEEEEeccccccc-ccc-c-ccccch-----hhHH---HHH
Confidence 345568999999998442110 01126899999985 789999999975431 210 0 001100 0000 011
Q ss_pred hhCCCCCCCCeEEEEcCC----C-------CcceEEEEEccCCCcceeeecCcccccCCCCCCC-EEEEEe--C------
Q 025138 114 ALSSPPFKNYQIWWSLAD----S-------KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF--E------ 173 (257)
Q Consensus 114 ~L~~~~~~gY~~~~~~~~----~-------~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr-~i~v~~--~------ 173 (257)
.++ . .||.++..... . ..+|+||+||+||... ....++..........| ++.+++ +
T Consensus 74 ~l~--~-~g~~~~~~~~~~~~~~~~~~~~~~~~G~AILSR~PI~~~-~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~ 149 (1452)
T PTZ00297 74 ELK--A-RGFHHYVISKQPSYLTMLRYNVCSDNGLIIASRFPIWQR-GSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGS 149 (1452)
T ss_pred HHH--h-cCCceeEeecCccccccccCccccCCEEEEEECCChhhc-eeeecCcccccccccccceEEEEEEccccCCCC
Confidence 222 1 47754332111 1 4569999999975321 12223210000001223 344443 2
Q ss_pred -CEEEEEEecCCCCCCCccccHHHHHHHHHHHHHHHHc-----------CCCCCEEEEecCCCC
Q 025138 174 -TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-----------CSGKPLIWCGDLNVS 225 (257)
Q Consensus 174 -~~~i~~vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~-----------~~~~pvIl~GDFN~~ 225 (257)
.+.++++|+-...... .|.++.+++.++++. ....|+||+||||+.
T Consensus 150 ~~v~v~~tHL~~~~~~~------~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~ 207 (1452)
T PTZ00297 150 QRIVFFNVHLRQEDSLP------STSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN 207 (1452)
T ss_pred ceEEEEEeCCCCCCCcc------hHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCc
Confidence 5999999996543321 133444555555543 134699999999965
No 14
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.20 E-value=5.8e-10 Score=99.70 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=81.2
Q ss_pred CCcEEEEEeCCcchhhhhcCc----hHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 025138 40 DPLKFVTWNANSLLLRVKNNW----PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~~~~~----~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L 115 (257)
..|||+||||+..... +..| ..+.++|+ ++|||++||+...... .+. .++..|
T Consensus 16 ~~l~I~SfNIr~fgd~-k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~---------~l~-----------~ll~~L 72 (276)
T smart00476 16 ASLRICAFNIQSFGDS-KMSNATLMSIIVKILS--RYDIALVQEVRDSDLS---------AVP-----------KLMDQL 72 (276)
T ss_pred CcEEEEEEECcccCCc-cccHHHHHHHHHHHhc--cCCEEEEEEeecchhH---------HHH-----------HHHHHH
Confidence 3699999999965432 2122 44555554 8999999999865321 111 011223
Q ss_pred CCCCCCCCeEEEEcCCC--C-cceEEEEEccCCCcceee--ecCccc----ccCCCCCCCEEEEEe-----CCEEEEEEe
Q 025138 116 SSPPFKNYQIWWSLADS--K-YAGTALLVKKCFQPKKVS--FSLEKT----ALKYEPDGRVILAEF-----ETFYLLNTY 181 (257)
Q Consensus 116 ~~~~~~gY~~~~~~~~~--~-~~GVAIlsr~~l~p~~v~--~~l~~~----~~~~d~~gr~i~v~~-----~~~~i~~vY 181 (257)
....-.+|.++.+.... + .--.++++|.. ...+. +.++.. ...+..+.-++..+. ..+.++++|
T Consensus 73 n~~~~~~Y~~v~s~r~gr~~~~E~~a~~Yr~d--rv~v~~~~~f~d~~~~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H 150 (276)
T smart00476 73 NSDSPNTYSYVSSEPLGRNSYKEQYLFLYRSD--LVSVLDSYLYDDGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLH 150 (276)
T ss_pred hhcCCCCceEEecCCCCCCCCCEEEEEEEecc--eEEEcccceecCCCCCccccccccceEEEEEeCCCCCccEEEEEec
Confidence 21111378877654221 1 22488999885 11111 111100 001111222333322 269999999
Q ss_pred cCCCCCCCccccHHHHHHHHHHHHHHHHcCCCCCEEEEecCCCCCCC
Q 025138 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 182 ~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~ 228 (257)
..+... .++....++-+.+..++....++|++||||+..+-
T Consensus 151 ~~p~~~------~~e~~aL~~v~~~~~~~~~~~~villGDFNa~~~y 191 (276)
T smart00476 151 TTPEAA------VAEIDALYDVYLDVRQKWGTEDVIFMGDFNAGCSY 191 (276)
T ss_pred CChHHH------HHHHHHHHHHHHHHHHhhccCCEEEEccCCCCCCc
Confidence 866431 11121223323343333356899999999997643
No 15
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.17 E-value=1.2e-10 Score=106.33 Aligned_cols=181 Identities=33% Similarity=0.463 Sum_probs=130.6
Q ss_pred CCcEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 025138 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~ 119 (257)
..+.|+.|||.+++...+. .-..++.....|++|+||++..-...+. .. +.
T Consensus 62 ~~~~i~~~~i~~~~~~~~~---~~~~~~~~~l~d~~~~~~t~~~i~~~~~------~~--------------------~~ 112 (335)
T KOG1294|consen 62 KVLNICPWDIAGLEACEKF---SGDPEISSELRDLQCLLETKCTIDSGPC------SH--------------------PT 112 (335)
T ss_pred eEeecCchhhhhhhhhhcc---ccchhccccchhhhhhhhccceeccCcc------ee--------------------cc
Confidence 3468889999998876653 3566777889999999999986433321 10 02
Q ss_pred CCCC-eEEEEcCC--CCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccHHH
Q 025138 120 FKNY-QIWWSLAD--SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR 196 (257)
Q Consensus 120 ~~gY-~~~~~~~~--~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~~~ 196 (257)
..|| ..+|..+. .++.|++.+++.. |..+.+++......++..+++|.+++..+.+++.|.|+....+ ...++
T Consensus 113 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~--p~~v~~~~~~~~s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~~--~~~~~ 188 (335)
T KOG1294|consen 113 EKGYTHSLLSCASKKDGYSGEIDYSKFK--PLKVHYGFGAMGSDHRPVGRVIIAEFEIFILINTYVPNIGGGL--VNLVY 188 (335)
T ss_pred cCCcccceeecccccCCccceeeeeecc--cceeeecccccCCccCccceEEEEeecceeeccccCccccccc--chhhh
Confidence 3678 45665543 3677899998875 7777777662125677899999999999999999999877654 33444
Q ss_pred H--HHHHHHHHHHHHcC-CC----CCEEEEecCCCCCCCcc----CCCcccccCCCCCCCCHHHHhhhh
Q 025138 197 R--RKWDKRIQEFVLQC-SG----KPLIWCGDLNVSHEEID----VSHPEFFAAAKLNGYVPPNKEVLV 254 (257)
Q Consensus 197 r--~~f~~~L~~~l~~~-~~----~pvIl~GDFN~~~~~~D----~~~~~~~~~~~~~~~~~~~r~~~~ 254 (257)
+ ..|...+...+.+. .. .++++|||.|..|..+| ..++. ....+.+||++++|..|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~~~~~-~~~~~~~~~t~e~R~~~~ 256 (335)
T KOG1294|consen 189 RILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPLVSPA-GNTLSNAGFTPEERDSFF 256 (335)
T ss_pred hhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccccccc-cCCcCCCCCCHHHhhhHH
Confidence 4 56666676666653 22 37999999999999999 45544 234588999999999983
No 16
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.16 E-value=1e-09 Score=103.05 Aligned_cols=160 Identities=21% Similarity=0.211 Sum_probs=90.9
Q ss_pred CCcEEEEEeCCcchh--h--------------hhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhh
Q 025138 40 DPLKFVTWNANSLLL--R--------------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKA 103 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~--~--------------~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~ 103 (257)
..++|+||||-.-.. . ..+++..|...|...+|||+||||+..... + +
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~--~------~-------- 178 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHY--P------E-------- 178 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhh--H------H--------
Confidence 589999999953211 0 011237889999999999999999986532 1 1
Q ss_pred hHHHHHHHHHhhCCCCCCCCeEEEEcCC-CCcceEEEEEccC-CCcce---eeecCccc-ccCCCCCCCEEEEEe----C
Q 025138 104 SREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKC-FQPKK---VSFSLEKT-ALKYEPDGRVILAEF----E 173 (257)
Q Consensus 104 ~~~~~~~~~~~L~~~~~~gY~~~~~~~~-~~~~GVAIlsr~~-l~p~~---v~~~l~~~-~~~~d~~gr~i~v~~----~ 173 (257)
.+| ..+ ...||..++.... .+..||||+++.. |.-.. +-+....+ ....+--+-+|..++ .
T Consensus 179 ---~~~---~~~---~~lGy~~~~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~ 249 (495)
T KOG2338|consen 179 ---FWQ---PLL---GKLGYTGFFKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDE 249 (495)
T ss_pred ---HHH---HHH---hhcCceEEEEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCc
Confidence 111 122 1278987654333 4567999999874 21110 11111100 000111233455554 1
Q ss_pred ---CEEEEEEecCCCCCCCccccHHHHHHHHHHHHHHHHc----C-CCCCEEEEecCCCCCCCc
Q 025138 174 ---TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----C-SGKPLIWCGDLNVSHEEI 229 (257)
Q Consensus 174 ---~~~i~~vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~----~-~~~pvIl~GDFN~~~~~~ 229 (257)
++.|.|+|+=...... .. |.++...|.+.+++ . ...|+++|||||+.+++-
T Consensus 250 ~sq~ilVanTHLl~np~~~-~v----rL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~~ 308 (495)
T KOG2338|consen 250 SSQGILVANTHLLFNPSRS-DV----RLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDSP 308 (495)
T ss_pred ccCceEEEeeeeeecCccc-ch----hhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCCC
Confidence 6889999875443221 12 44444445555543 1 245999999999988553
No 17
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=98.99 E-value=2.2e-09 Score=97.31 Aligned_cols=166 Identities=17% Similarity=0.151 Sum_probs=91.4
Q ss_pred CCCCcEEEEEeCCcchhhhhc---CchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 025138 38 KKDPLKFVTWNANSLLLRVKN---NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (257)
Q Consensus 38 ~~~~lrIiTwNv~gl~~~~~~---~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (257)
..-.+||+|.|++|+.-..+. +...+.+++.+...||+.|||+|...+ + +.+.+.
T Consensus 5 ~a~~lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD-~---------------------~~L~~~ 62 (422)
T KOG3873|consen 5 LALELRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQED-F---------------------EYLQSG 62 (422)
T ss_pred hhheeeeeEeeccccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHH-H---------------------HHHHHh
Confidence 345789999999997532111 125788999999999999999987642 1 111122
Q ss_pred hCCCCCCCCeEEEEcCCCCcceEEEEEccCCCcc-eeeecCccc---ccCCCC-CCCEEE---EEeC--CEEEEEEec--
Q 025138 115 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK-KVSFSLEKT---ALKYEP-DGRVIL---AEFE--TFYLLNTYA-- 182 (257)
Q Consensus 115 L~~~~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~-~v~~~l~~~---~~~~d~-~gr~i~---v~~~--~~~i~~vY~-- 182 (257)
.+ .-..|.-+++.+-- +.|+++|||.||... --.+.+.+- ....|. .|..+. +.++ .+.+.|+|+
T Consensus 63 ~s--s~yPysh~FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntHLHA 139 (422)
T KOG3873|consen 63 CS--SVYPYSHYFHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTHLHA 139 (422)
T ss_pred cc--ccCchHHhhhcccc-cCceEEeecCchhhhhhhccccCCccceeeeccccccceeEEEEEeeCCEEeeeeehhccc
Confidence 22 11345444443333 579999999976311 112333221 011121 333332 2334 355555544
Q ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHc--CCCCCEEEEecCCCCCCCcc
Q 025138 183 PNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEID 230 (257)
Q Consensus 183 P~~~~~~~~~~~~~r~~f~~~L~~~l~~--~~~~pvIl~GDFN~~~~~~D 230 (257)
|.+... +.=...|..+.=.+.++++. ..+.-+|++||||+.|.++.
T Consensus 140 eY~rq~--D~YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl~ 187 (422)
T KOG3873|consen 140 EYDRQN--DEYLCHRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDLG 187 (422)
T ss_pred cccccC--chhhhHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCccccc
Confidence 333322 22222233322235555554 25678999999999987654
No 18
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.72 E-value=3.3e-07 Score=83.40 Aligned_cols=165 Identities=17% Similarity=0.172 Sum_probs=87.2
Q ss_pred CcEEEEEeCCcchhhhhcCchHHHHHHhh-------cCCcE--EEEeccc-CCCCCCCCCCccccccchhhhhhHHHHHH
Q 025138 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT-------FDPDV--IALQEVR-MPAAGSKDAPKNHQELKDDTKASREEKLI 110 (257)
Q Consensus 41 ~lrIiTwNv~gl~~~~~~~~~~l~~~l~~-------~~~DI--i~LQEt~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 110 (257)
.+-++||||+|...... ..+..+|.. ..||| |+|||+- ......... ..... ..|..
T Consensus 4 ~v~v~TwNv~~~~~~p~---~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~---~~~~~-------~~W~~ 70 (310)
T smart00128 4 KVLVGTWNVGGLKADPK---VDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLET---IAGKE-------RLWSK 70 (310)
T ss_pred EEEEEEEECCCccCCCh---hhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhc---cchhH-------HHHHH
Confidence 45788999999642212 457777765 67999 6699993 221111000 00000 11111
Q ss_pred -HHHhhCCCCCCCCeEEEEcCCCCcceEEEEEccCCCcc-------eeeecCcccccCCCCCCCEEEEEeC--CEEEEEE
Q 025138 111 -LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK-------KVSFSLEKTALKYEPDGRVILAEFE--TFYLLNT 180 (257)
Q Consensus 111 -~~~~L~~~~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~-------~v~~~l~~~~~~~d~~gr~i~v~~~--~~~i~~v 180 (257)
+...|. ....|..+.+. .-+.-++.|++|..+.+. .+.+++.+ ...+..+.++.+.+. .+.++++
T Consensus 71 ~i~~~l~--~~~~Y~~v~~~-~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~--~~~nKG~v~i~~~~~~~~~~fv~~ 145 (310)
T smart00128 71 LIESSLN--GDGQYNVLAKV-RLVGILVLVFVKANHLVYIKDVETFTVKTGMGG--LWGNKGAVAVRFKLSDTSFCFVNS 145 (310)
T ss_pred HHHHhcC--CCCceEEEeee-eecceEEEEEEehhhcCccceeEeeeeeccccc--eeecCceEEEEEEEcCcEEEEEee
Confidence 112331 01345544321 223346788888865321 12233322 112344556666665 4999999
Q ss_pred ecCCCCCCCccccHHHHHHHHHHHHHHHHc--------CCCCCEEEEecCCCCCCC
Q 025138 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--------CSGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 181 Y~P~~~~~~~~~~~~~r~~f~~~L~~~l~~--------~~~~pvIl~GDFN~~~~~ 228 (257)
|++++.. +.++|..-+..+.+.+.- .....+|++||||...+.
T Consensus 146 HL~a~~~-----~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~~ 196 (310)
T smart00128 146 HLAAGAS-----NVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLDS 196 (310)
T ss_pred ccccccc-----hhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeecC
Confidence 9998764 234455555555443321 124789999999976543
No 19
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.68 E-value=1e-07 Score=85.60 Aligned_cols=170 Identities=15% Similarity=0.064 Sum_probs=100.7
Q ss_pred CCCCcEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 025138 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (257)
Q Consensus 38 ~~~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 117 (257)
....+++++.|++.-+... ..+...+...++|+|.+||+..-.... ...++
T Consensus 85 ~~~~~~~l~~N~r~~n~~~----~k~Lsl~~~~~~D~v~~~E~~~~~~~~------------------------~~~l~- 135 (309)
T COG3021 85 DQRLLWNLQKNVRFDNASV----AKLLSLIQQLDADAVTTPEGVQLWTAK------------------------VGALA- 135 (309)
T ss_pred cchhhhhhhhhccccCcCH----HHHHHHHhhhCcchhhhHHHHHHhHhH------------------------HHHHH-
Confidence 4567899999988765544 457888888889999999996432210 01221
Q ss_pred CCCCCCeEEEEcCCC-CcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEe----CCEEEEEEecCCCCCCCccc
Q 025138 118 PPFKNYQIWWSLADS-KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEEN 192 (257)
Q Consensus 118 ~~~~gY~~~~~~~~~-~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~----~~~~i~~vY~P~~~~~~~~~ 192 (257)
..|..+..+... +..|+++++|.+ +.......+. .....++.+.+.. ..+.++++|.-+....
T Consensus 136 ---~~yP~~~~~~~~~~~~~~a~~sr~~--~~~~~~~e~~---~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~---- 203 (309)
T COG3021 136 ---AQYPAFILCQHPTGVFTLAILSRRP--CCPLTEAEPW---LRLPKSALATAYPLPDGTELTVVALHAVNFPVG---- 203 (309)
T ss_pred ---HhCCceeecCCCCCeeeeeeccccc--cccccccCcc---ccCCccceeEEEEcCCCCEEEEEeeccccccCC----
Confidence 345543333332 566899999884 1111111111 1122344443332 2688888887654432
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCEEEEecCCCCCCCc----------cCCCcccccCCCCCCCCHHHHhh
Q 025138 193 SFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEI----------DVSHPEFFAAAKLNGYVPPNKEV 252 (257)
Q Consensus 193 ~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~~----------D~~~~~~~~~~~~~~~~~~~r~~ 252 (257)
...+| +.+.+|.+.+.. ..+|+|++||||+.+.+. ....+. .+....+|+|+++..
T Consensus 204 ~~~~~-~ql~~l~~~i~~-~~gpvIlaGDfNa~pWS~~~~R~~~l~~~~~~~~--aG~~~~~~~p~~~~r 269 (309)
T COG3021 204 TDPQR-AQLLELGDQIAG-HSGPVILAGDFNAPPWSRTAKRMAALGGLRAAPR--AGLWEVRFTPDERRR 269 (309)
T ss_pred ccHHH-HHHHHHHHHHHc-CCCCeEEeecCCCcchhHHHHHHHHhcccccchh--ccCCccccCHHHHhh
Confidence 22344 445566666654 358999999999976544 112222 346778899999875
No 20
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=98.15 E-value=3.8e-06 Score=64.56 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=31.7
Q ss_pred EEEEEEecCCCCCCCccccHHHHHHHHHHHHHHHHcCCCCCEEEEecCCCCCCCccCCC
Q 025138 175 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSH 233 (257)
Q Consensus 175 ~~i~~vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~~D~~~ 233 (257)
+.|+++|.|+... +..|++.|.+++......++|++||||+.+..++...
T Consensus 1 i~i~~vY~pp~~~---------~~~~~~~l~~~~~~~~~~~~Ii~GDFN~~~~~w~~~~ 50 (119)
T PF14529_consen 1 ITIISVYAPPSSE---------REEFFDQLRQLLKNLPPAPIIIGGDFNAHHPNWDSSN 50 (119)
T ss_dssp EEEEEEE--TTS----------CHHHHHHHHHHHHCCTTSSEEEEEE-----GGGT-SC
T ss_pred CEEEEEECCCCcc---------HHHHHHHHHHHHHhCCCCCEEEEeECCCCchhhhhcc
Confidence 5799999999871 3477888988887754449999999999776665543
No 21
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=97.06 E-value=0.0011 Score=60.70 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=32.0
Q ss_pred CcEEEEEeCCcchhhh-------------hcCchHHHHHHhhcCCcEEEEecccCCC
Q 025138 41 PLKFVTWNANSLLLRV-------------KNNWPEFSNFITTFDPDVIALQEVRMPA 84 (257)
Q Consensus 41 ~lrIiTwNv~gl~~~~-------------~~~~~~l~~~l~~~~~DIi~LQEt~~~~ 84 (257)
.++|+|||+-.-.... ..+...+...|...++||+||||+....
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~ 86 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAED 86 (378)
T ss_pred eeEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCceeeeehhhhhH
Confidence 8999999995422100 1112678888889999999999997653
No 22
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.02 Score=58.26 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=78.4
Q ss_pred CcEEEEEeCCcchhhhhcCchHHHHHHhhc-------CCcE--EEEeccc-CCCCCCCCCCccccccchhhhhhHHHHHH
Q 025138 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTF-------DPDV--IALQEVR-MPAAGSKDAPKNHQELKDDTKASREEKLI 110 (257)
Q Consensus 41 ~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~-------~~DI--i~LQEt~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 110 (257)
.+-+.||||||.....+ +.+.+||--. -+|| |.+||+- ....++. ..|.. -+.-|--
T Consensus 538 ~IfvgTfNvNG~s~~~k---~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv---------~As~t-k~~~Wee 604 (1080)
T KOG0566|consen 538 SIFVGTFNVNGRSAAFK---DDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIV---------SASTT-KRRFWEE 604 (1080)
T ss_pred EEEEEeeeccCccccch---hhHHhhccccccCCcCCcCcEEEEeehhhhhcCcccee---------ccChH-HHHHHHH
Confidence 34556999999332222 4677777544 3776 5579983 2222211 11110 0111111
Q ss_pred -HHHhhCCCCCCCCeEEEEcCCCCcceEEEE--EccCCCcc-------eeeecCcccccCCCCCCCEEEEEe--C--CEE
Q 025138 111 -LMRALSSPPFKNYQIWWSLADSKYAGTALL--VKKCFQPK-------KVSFSLEKTALKYEPDGRVILAEF--E--TFY 176 (257)
Q Consensus 111 -~~~~L~~~~~~gY~~~~~~~~~~~~GVAIl--sr~~l~p~-------~v~~~l~~~~~~~d~~gr~i~v~~--~--~~~ 176 (257)
+.+.|.+ .-..|-..++ ....||.++ +|..-.|. .+.+++.+ .......+.+++ . .+.
T Consensus 605 ~i~~~Ln~-~~~kYvlL~s---~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG----~tgNKGAVAIrf~~~~TsfC 676 (1080)
T KOG0566|consen 605 KILKTLNR-YKNKYVLLRS---EQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGG----ATGNKGAVAIRFVYHATSFC 676 (1080)
T ss_pred HHHHHhcC-CCCceEEEeh---hhhheeeEEEEEcccccchhhhcccceeeccccc----ccCCCceEEEEEEeccccEE
Confidence 1133321 1134444432 234576665 56542221 12344543 122223455554 3 688
Q ss_pred EEEEecCCCCCCCccccHHHHHHHHHHHHHHHHc-----C-CCCCEEEEecCCCCC
Q 025138 177 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-----C-SGKPLIWCGDLNVSH 226 (257)
Q Consensus 177 i~~vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~-----~-~~~pvIl~GDFN~~~ 226 (257)
+++-|+-++.+. .++|..=+..+.+-|.= . ..+.+++|||||..-
T Consensus 677 Fv~SHlAAG~sn-----v~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI 727 (1080)
T KOG0566|consen 677 FVCSHLAAGQSN-----VEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRI 727 (1080)
T ss_pred EEecccccccch-----HhhhhhhHHHHHHhccccCCccccCCceEEEecccceee
Confidence 888898887653 33444334444444431 1 346799999999753
No 23
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=94.12 E-value=0.063 Score=50.02 Aligned_cols=77 Identities=19% Similarity=0.215 Sum_probs=47.5
Q ss_pred CcEEEEEeCCcchhhh--------------hcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHH
Q 025138 41 PLKFVTWNANSLLLRV--------------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASRE 106 (257)
Q Consensus 41 ~lrIiTwNv~gl~~~~--------------~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (257)
.++|+|||+....... ..+...+...|...+||++||||+..-. .+..
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev~~~~-~~~~----------------- 80 (361)
T KOG0620|consen 19 TFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEVDRYH-DFFS----------------- 80 (361)
T ss_pred eEEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchhhHHH-HHcc-----------------
Confidence 8899999997643211 0012556666667899999999992111 1110
Q ss_pred HHHHHHHhhCCCCCCCCeEEEEcC-------CCCcceEEEEEccC
Q 025138 107 EKLILMRALSSPPFKNYQIWWSLA-------DSKYAGTALLVKKC 144 (257)
Q Consensus 107 ~~~~~~~~L~~~~~~gY~~~~~~~-------~~~~~GVAIlsr~~ 144 (257)
..+. . .||...|... .++-.|+||+.|.+
T Consensus 81 ------p~l~--~-~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s 116 (361)
T KOG0620|consen 81 ------PELE--A-SGYSGIFIEKTRMGEVELEKIDGCAIFFKPS 116 (361)
T ss_pred ------chhh--h-cCCcceeecccccchhhcccCceeeeeecch
Confidence 0111 1 5898777641 33467999998875
No 24
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=90.80 E-value=12 Score=38.04 Aligned_cols=171 Identities=17% Similarity=0.174 Sum_probs=87.0
Q ss_pred CCCCcEEEEEeCCcchh-----------h-----------hhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCcccc
Q 025138 38 KKDPLKFVTWNANSLLL-----------R-----------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95 (257)
Q Consensus 38 ~~~~lrIiTwNv~gl~~-----------~-----------~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~ 95 (257)
....|||.++||...-. . .++++..+...|...++||+.|-|+.... ++... -.
T Consensus 460 v~G~LkiasfNVlNyf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~--~~~~s--~~ 535 (798)
T COG2374 460 VGGSLKIASFNVLNYFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNG--YGTDS--GD 535 (798)
T ss_pred cCceeeeeeeehhhhhccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccC--CCCCc--HH
Confidence 35679999999943211 0 01124678888889999999999997653 22110 00
Q ss_pred ccchhhhhhHHHHHHHHHhhCCCCCC-CCeEEEEcCC--CC--cceEEEEEccCCCcceeee-c---Cc-c-----cccC
Q 025138 96 ELKDDTKASREEKLILMRALSSPPFK-NYQIWWSLAD--SK--YAGTALLVKKCFQPKKVSF-S---LE-K-----TALK 160 (257)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~L~~~~~~-gY~~~~~~~~--~~--~~GVAIlsr~~l~p~~v~~-~---l~-~-----~~~~ 160 (257)
.+ .++...+ .+.+.. . .|.++..... -+ .-+|++++|.. .|.. + +. . ....
T Consensus 536 ai-~~lV~~l------na~~G~---~~~y~~v~p~~~~~lgtD~I~vg~iY~~~----~V~~~g~~~~~~~~a~~~v~~~ 601 (798)
T COG2374 536 AI-AQLVNAL------NAKAGA---GTRYAFVAPGRNGGLGTDAIRVGFIYKPS----AVSLVGKAAIVDNDAFLGVGEI 601 (798)
T ss_pred HH-HHHHHHH------HhhcCC---CceEEEEecCccCCcCCCceeEEEEeccc----eEEecccccccccccccccccc
Confidence 11 1221111 133321 3 3444433211 11 33688888753 2211 0 00 0 0000
Q ss_pred CCCCCCEEEE-Ee------CCEEEEEEecCCCCCCCc---------cccHHHHHHHHHHHHHHHHcC----CCCCEEEEe
Q 025138 161 YEPDGRVILA-EF------ETFYLLNTYAPNNGWKEE---------ENSFQRRRKWDKRIQEFVLQC----SGKPLIWCG 220 (257)
Q Consensus 161 ~d~~gr~i~v-~~------~~~~i~~vY~P~~~~~~~---------~~~~~~r~~f~~~L~~~l~~~----~~~pvIl~G 220 (257)
.+...|.-.+ .| ..|+++.-|+.+-+.... ...-..|.+..++|..+++.. ...++++.|
T Consensus 602 ~~~n~R~~laqtF~~~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~~~d~~~viLG 681 (798)
T COG2374 602 DDNNARPPLAQTFQDLSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTGKADADIVILG 681 (798)
T ss_pred cccccCcchhhhhhhccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCcccccCCCEEEEe
Confidence 1112232111 11 246777778765443211 012234667788899999853 367999999
Q ss_pred cCCCCC
Q 025138 221 DLNVSH 226 (257)
Q Consensus 221 DFN~~~ 226 (257)
|||.-.
T Consensus 682 D~N~y~ 687 (798)
T COG2374 682 DFNDYA 687 (798)
T ss_pred ccchhh
Confidence 999644
No 25
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=89.36 E-value=1.5 Score=43.49 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=31.8
Q ss_pred EEEEeC--CEEEEEEecCCCCCCCccccHHHHHHHHHHHHHHHH--c----------CCCCCEEEEecCCCCCC
Q 025138 168 ILAEFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--Q----------CSGKPLIWCGDLNVSHE 227 (257)
Q Consensus 168 i~v~~~--~~~i~~vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~--~----------~~~~pvIl~GDFN~~~~ 227 (257)
|.+.+. .+.++|.|+.++... ...++|..-+..+...+. . .....+|++||||....
T Consensus 413 Ir~~l~~Ts~cFVn~HLAAg~~~---~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRId 483 (621)
T PLN03191 413 ISMSLFQSRLCFVCSHLTSGHKD---GAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLN 483 (621)
T ss_pred EEEEEcCcEEEEEEecccccccc---chHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccccc
Confidence 444443 689999999887532 122334332223322111 0 02357999999997654
No 26
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=81.16 E-value=3.6 Score=37.35 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=30.9
Q ss_pred CEEEEEEecCCCCCCCcc------ccHHHHHHHHHHHHHHHHc--CCCCCEEEEecCCCCCCC
Q 025138 174 TFYLLNTYAPNNGWKEEE------NSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 174 ~~~i~~vY~P~~~~~~~~------~~~~~r~~f~~~L~~~l~~--~~~~pvIl~GDFN~~~~~ 228 (257)
.+.++|+|+=+..+.... .....|.+-+....+.+.. ....++++.||||...+.
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld~ 143 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLDG 143 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeecc
Confidence 578999998766543211 1122233333333322222 256899999999976643
No 27
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=54.63 E-value=11 Score=37.44 Aligned_cols=38 Identities=29% Similarity=0.457 Sum_probs=25.8
Q ss_pred cEEEEEeCCcchhhhhcCchHHHHHHhhcC-CcE--EEEecccC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFD-PDV--IALQEVRM 82 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~-~DI--i~LQEt~~ 82 (257)
+-|.||||+|...... -.+..||...+ +|| |.|||+-.
T Consensus 110 v~v~TWNV~g~~p~~~---l~l~~wl~~~~p~DiyviG~QE~v~ 150 (621)
T PLN03191 110 VTIGTWNVAGRLPSED---LEIEDWLSTEEPADIYIIGFQEVVP 150 (621)
T ss_pred EEEEEeecCCCCCccc---CCHHHhccCCCCCCEEEEeeEEecc
Confidence 4566999999755332 24778887665 476 56799953
No 28
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=48.49 E-value=37 Score=32.49 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=31.2
Q ss_pred CEEEEEEecCCCCCCCccccHHHHHHHHHHHHHHHHcC------CCCCEEEEecCCCCCCC
Q 025138 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC------SGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 174 ~~~i~~vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~------~~~pvIl~GDFN~~~~~ 228 (257)
++.+++.|+-++.. +.++|..-++.+..-|.-. ....++++||||...+.
T Consensus 166 ~~cFv~shlaag~~-----N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyRVts 221 (460)
T COG5411 166 SFCFVNSHLAAGVN-----NIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYRVTS 221 (460)
T ss_pred CcEEEecchhcccc-----cHHHHHHHHHHHHHheecCCCceecccceEEEecccCceeec
Confidence 68888888876654 3445544444444444321 23569999999965544
No 29
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=36.95 E-value=19 Score=33.69 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=14.8
Q ss_pred CCCEEEEecCCCCCCCccC
Q 025138 213 GKPLIWCGDLNVSHEEIDV 231 (257)
Q Consensus 213 ~~pvIl~GDFN~~~~~~D~ 231 (257)
.-|+++|||||+.+.+..+
T Consensus 221 ~~p~l~~gdfNs~p~~~v~ 239 (361)
T KOG0620|consen 221 SFPLLLCGDFNSTPLSPVY 239 (361)
T ss_pred ccceeeeccccCCCCccce
Confidence 4699999999998755433
No 30
>PLN02504 nitrilase
Probab=29.15 E-value=95 Score=28.62 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=33.3
Q ss_pred ccCCCCCCCCCCCCccccCCCCCCCCCCcE--EEEEeCCcchhhhhcCchHHHHHHh---hcCCcEEEEecccCC
Q 025138 14 AKKPALSPSKKDGETTETSSEENSKKDPLK--FVTWNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQEVRMP 83 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr--IiTwNv~gl~~~~~~~~~~l~~~l~---~~~~DIi~LQEt~~~ 83 (257)
|.-||..|.-.-|.... ...|| ++++++.-...... ...+..++. +.++|+|+++|+...
T Consensus 5 ~~~~~~~~~~~~~~~~~--------~~~~kiAlvQ~~~~~~d~~~n--l~~~~~li~eAa~~gadLIVfPE~~lt 69 (346)
T PLN02504 5 ADMPAVEPEVDMGADAS--------SSTVRATVVQASTVFYDTPAT--LDKAERLIAEAAAYGSQLVVFPEAFIG 69 (346)
T ss_pred CCCccccCCcccccccc--------CCceEEEEEEcCcccCCHHHH--HHHHHHHHHHHHHCCCeEEEeCccccc
Confidence 55677777655553322 22455 55666542221111 134455554 567999999998654
No 31
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=26.76 E-value=45 Score=30.02 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=19.6
Q ss_pred cCchHHHHHHhhcCCcEEEEecc
Q 025138 58 NNWPEFSNFITTFDPDVIALQEV 80 (257)
Q Consensus 58 ~~~~~l~~~l~~~~~DIi~LQEt 80 (257)
.++..+..+|.+++|||++|+=-
T Consensus 140 eqp~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 140 EMPEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred hchHHHHHHHHHhCCCEEEEeCc
Confidence 34688999999999999999644
No 32
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=24.69 E-value=47 Score=29.98 Aligned_cols=22 Identities=9% Similarity=0.357 Sum_probs=19.2
Q ss_pred CchHHHHHHhhcCCcEEEEecc
Q 025138 59 NWPEFSNFITTFDPDVIALQEV 80 (257)
Q Consensus 59 ~~~~l~~~l~~~~~DIi~LQEt 80 (257)
++..+..+|.+++||||+|+=-
T Consensus 142 qp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 142 QPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred hhHHHHHHHHHcCCCEEEEeCc
Confidence 4688999999999999999644
No 33
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=23.92 E-value=93 Score=25.22 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCCCCEEEEecCCC
Q 025138 199 KWDKRIQEFVLQCSGKPLIWCGDLNV 224 (257)
Q Consensus 199 ~f~~~L~~~l~~~~~~pvIl~GDFN~ 224 (257)
+.++.+.+.+.+.....+|++||+=-
T Consensus 28 ~~~~~l~~~~~~~~~d~lii~GDl~~ 53 (172)
T cd07391 28 DTLERLDRLIEEYGPERLIILGDLKH 53 (172)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 44566777776656688999999863
No 34
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=23.70 E-value=82 Score=28.95 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=34.5
Q ss_pred CEEEEEEecCCCCCCC-----ccccHH-HHHHHHHHHHHHHHc--CCCCCEEEEecCCCCCCCccCC
Q 025138 174 TFYLLNTYAPNNGWKE-----EENSFQ-RRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVS 232 (257)
Q Consensus 174 ~~~i~~vY~P~~~~~~-----~~~~~~-~r~~f~~~L~~~l~~--~~~~pvIl~GDFN~~~~~~D~~ 232 (257)
.+.++|+|+=+..+.. +...+. .|.+.++.+.+.|.. +...-+++.||||....+-+.-
T Consensus 170 ~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~~~~~~fVfGdfNfrLds~s~l 236 (391)
T KOG1976|consen 170 EFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGLRNDAIFVFGDFNFRLDSTSLL 236 (391)
T ss_pred eeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhccCceEEEEecccccccchHHHH
Confidence 5788898874332211 011111 234556666666654 2445789999999987765553
No 35
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=22.97 E-value=1.1e+02 Score=26.67 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=16.3
Q ss_pred hHHHHHHhh-cCCcEEEEecccCC
Q 025138 61 PEFSNFITT-FDPDVIALQEVRMP 83 (257)
Q Consensus 61 ~~l~~~l~~-~~~DIi~LQEt~~~ 83 (257)
+.+..++.+ ..+|+|+++|....
T Consensus 23 ~~~~~~i~~a~gadLivfPE~~~~ 46 (256)
T PRK10438 23 RHFDRQLEGITGRDVIVLPEMFTT 46 (256)
T ss_pred HHHHHHHHhccCCCEEEeCCcccC
Confidence 345555554 57999999998754
No 36
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=22.63 E-value=97 Score=23.36 Aligned_cols=18 Identities=22% Similarity=0.446 Sum_probs=13.2
Q ss_pred HHHHHHcCCCCCEEEEec
Q 025138 204 IQEFVLQCSGKPLIWCGD 221 (257)
Q Consensus 204 L~~~l~~~~~~pvIl~GD 221 (257)
|.++++.....++|++||
T Consensus 55 i~~i~~~fP~~kfiLIGD 72 (100)
T PF09949_consen 55 IERILRDFPERKFILIGD 72 (100)
T ss_pred HHHHHHHCCCCcEEEEee
Confidence 445554457789999999
No 37
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=20.81 E-value=1.4e+02 Score=27.76 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=28.5
Q ss_pred cCCCCCCCCCCcEEEE--EeCCcch-----hhhhcCchHHHHHHh---hcCCcEEEEecccCC
Q 025138 31 TSSEENSKKDPLKFVT--WNANSLL-----LRVKNNWPEFSNFIT---TFDPDVIALQEVRMP 83 (257)
Q Consensus 31 ~~~~~~~~~~~lrIiT--wNv~gl~-----~~~~~~~~~l~~~l~---~~~~DIi~LQEt~~~ 83 (257)
...|.......|||.. +++.-.. .......+.+..++. ..++|+|||+|++..
T Consensus 53 ~~~~~~~~~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~ 115 (363)
T cd07587 53 AAPEQTRPPRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTM 115 (363)
T ss_pred CChhhcCCCceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccC
Confidence 3455555566788765 4433110 000001134445544 468999999999764
No 38
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=20.52 E-value=1.2e+02 Score=26.13 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=19.3
Q ss_pred hHHHHHHhhcCCcEEEEecccCCC
Q 025138 61 PEFSNFITTFDPDVIALQEVRMPA 84 (257)
Q Consensus 61 ~~l~~~l~~~~~DIi~LQEt~~~~ 84 (257)
+.+..++.+..+|+|+++|.....
T Consensus 19 ~~~~~~i~~a~adlvvfPE~~l~g 42 (259)
T cd07577 19 KKVESLIKGVEADLIVLPELFNTG 42 (259)
T ss_pred HHHHHHHHHhCCCEEEcccccccC
Confidence 567778877779999999997653
Done!