Query 025138
Match_columns 257
No_of_seqs 148 out of 1156
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 4E-28 1.4E-32 211.5 17.7 178 40-254 2-182 (265)
2 2j63_A AP-endonuclease; base e 99.9 3.2E-26 1.1E-30 216.8 19.7 188 39-254 147-389 (467)
3 1hd7_A DNA-(apurinic or apyrim 99.9 1.2E-25 4E-30 201.9 18.9 179 38-253 58-240 (318)
4 2o3h_A DNA-(apurinic or apyrim 99.9 4.9E-25 1.7E-29 193.4 22.0 181 36-253 23-207 (285)
5 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 3.7E-25 1.3E-29 190.6 20.2 174 42-254 2-177 (257)
6 2jc4_A Exodeoxyribonuclease II 99.9 1.8E-24 6E-29 185.8 21.3 175 42-254 1-177 (256)
7 2jc5_A Exodeoxyribonuclease; h 99.9 7E-25 2.4E-29 188.6 17.9 175 42-253 2-179 (259)
8 1ako_A Exonuclease III; AP-end 99.9 1.5E-23 5E-28 181.2 16.1 178 42-254 1-188 (268)
9 1vyb_A ORF2 contains A reverse 99.9 6E-23 2E-27 174.1 18.4 148 38-232 4-156 (238)
10 2ei9_A Non-LTR retrotransposon 99.9 4.5E-22 1.5E-26 172.7 12.8 128 41-228 7-134 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 99.8 9.2E-20 3.2E-24 156.8 16.9 141 39-229 17-162 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 99.8 5.9E-20 2E-24 168.5 14.4 163 31-231 109-281 (362)
13 4fva_A 5'-tyrosyl-DNA phosphod 99.8 1E-19 3.5E-24 155.0 14.6 155 37-229 9-173 (256)
14 4f1h_A Tyrosyl-DNA phosphodies 99.8 4.1E-18 1.4E-22 142.7 13.4 150 40-228 2-159 (250)
15 4gz1_A Tyrosyl-DNA phosphodies 99.8 2.4E-18 8.4E-23 146.2 9.7 151 39-228 7-165 (256)
16 3teb_A Endonuclease/exonucleas 99.7 9.1E-17 3.1E-21 138.2 14.2 170 40-226 2-181 (266)
17 3l1w_A Uncharacterized protein 99.7 1.2E-16 3.9E-21 137.7 11.0 151 42-228 1-173 (257)
18 1zwx_A SMCL, sphingomyelinase- 99.7 4.8E-16 1.6E-20 136.8 13.9 165 40-229 9-203 (301)
19 2ddr_A Sphingomyelin phosphodi 99.7 1.5E-15 5.2E-20 133.7 14.8 165 39-227 7-201 (306)
20 3g6s_A Putative endonuclease/e 99.6 2.2E-15 7.6E-20 130.4 14.4 154 40-228 2-179 (267)
21 3i41_A Beta-hemolysin; beta to 99.6 2E-15 6.9E-20 135.3 13.5 165 38-228 26-221 (317)
22 2f1n_A CDT B, cytolethal diste 99.6 1.2E-14 4.2E-19 126.4 12.2 162 40-229 14-193 (262)
23 3mpr_A Putative endonuclease/e 99.6 2.6E-14 8.8E-19 126.5 13.4 155 39-228 4-185 (298)
24 1sr4_B CDT B, cytolethal diste 99.5 1.1E-13 3.9E-18 121.1 15.5 166 40-228 3-184 (261)
25 3ngq_A CCR4-NOT transcription 99.5 2E-13 6.7E-18 126.8 13.1 44 39-82 29-86 (398)
26 2a40_B Deoxyribonuclease-1; WA 99.4 1.2E-11 4.2E-16 107.1 15.3 153 42-227 1-174 (260)
27 4b8c_D Glucose-repressible alc 99.0 4.1E-11 1.4E-15 118.8 2.4 43 40-82 393-449 (727)
28 1i9z_A Synaptojanin, phosphati 98.8 3E-08 1E-12 90.3 13.2 162 40-226 25-212 (347)
29 2imq_X Salivary nitrophorin; f 98.8 2.4E-09 8.2E-14 94.6 4.4 156 40-227 7-177 (282)
30 2xsw_A 72 kDa inositol polypho 98.8 2.6E-08 8.9E-13 91.0 10.1 152 39-228 25-211 (357)
31 3mtc_A Type II inositol-1,4,5- 98.6 8.2E-07 2.8E-11 79.6 14.1 162 41-228 9-197 (313)
32 4a9c_A Phosphatidylinositol-3, 98.3 5.6E-06 1.9E-10 74.2 11.1 153 41-226 9-196 (316)
33 3p8k_A Hydrolase, carbon-nitro 49.0 13 0.00043 31.7 3.5 50 35-84 14-66 (281)
34 3hkx_A Amidase; alpha-beta-BET 36.9 21 0.00072 30.3 3.0 44 38-83 17-65 (283)
35 2e11_A Hydrolase; dimethylarse 26.1 56 0.0019 27.0 3.8 24 61-84 23-48 (266)
36 1f89_A 32.5 kDa protein YLR351 23.4 44 0.0015 28.1 2.6 15 69-83 43-57 (291)
37 3ivz_A Nitrilase; alpha-beta s 22.3 60 0.002 26.8 3.2 24 61-84 21-47 (262)
38 1uf5_A N-carbamyl-D-amino acid 20.9 55 0.0019 27.6 2.8 22 62-83 26-50 (303)
39 4f4h_A Glutamine dependent NAD 20.2 64 0.0022 30.5 3.3 46 38-83 3-51 (565)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.96 E-value=4e-28 Score=211.45 Aligned_cols=178 Identities=27% Similarity=0.550 Sum_probs=139.5
Q ss_pred CCcEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 025138 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~ 119 (257)
..|||+||||+|++...+ ..+.++|++.+|||||||||+.....++ ..+. .
T Consensus 2 ~~l~i~s~Nv~g~~~~~~---~~l~~~i~~~~~DIv~LQEt~~~~~~~~------------------------~~~~--~ 52 (265)
T 3g91_A 2 AVLKIISWNVNGLRAVHR---KGFLKWFMEEKPDILCLQEIKAAPEQLP------------------------RKLR--H 52 (265)
T ss_dssp CEEEEEEEECSCHHHHHH---HTHHHHHHHHCCSEEEEECCCSCGGGSC------------------------HHHH--C
T ss_pred CccEEEEEEcCCchhhhh---hhHHHHHHhcCCCEEEEEeccccccccC------------------------hhhh--c
Confidence 369999999999988765 2599999999999999999987754322 0111 1
Q ss_pred CCCCeEEEEcC-CCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccHHHHH
Q 025138 120 FKNYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 198 (257)
Q Consensus 120 ~~gY~~~~~~~-~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~~~r~ 198 (257)
..||..++... ..+++||||++|.+ +..+..++.. ...+.++|++.+++..+.|+|+|+|++... ..++.+|.
T Consensus 53 ~~gy~~~~~~~~~~~~~Gvail~k~~--~~~~~~~~~~--~~~d~~gr~i~~~~~~~~i~~vy~p~~~~~--~~~~~~r~ 126 (265)
T 3g91_A 53 VEGYRSFFTPAERKGYSGVAMYTKVP--PSSLREGFGV--ERFDTEGRIQIADFDDFLLYNIYFPNGAMS--EERLKYKL 126 (265)
T ss_dssp CTTCEEEEECBSSTTSCCEEEEESSC--CSEEECCCSC--HHHHSBSCEEEEECSSCEEEEEECCCCTTC--HHHHHHHH
T ss_pred ccCCcEEEccCCCCCcCEEEEEEecC--hHHhccCCCC--cccCCcCCEEEEEeCCEEEEEEEecCCCCC--chhHHHHH
Confidence 26999777653 34677999999986 4444444432 234568999999999999999999998753 35778899
Q ss_pred HHHHHHHHHHHcC--CCCCEEEEecCCCCCCCccCCCcccccCCCCCCCCHHHHhhhh
Q 025138 199 KWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEVLV 254 (257)
Q Consensus 199 ~f~~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~r~~~~ 254 (257)
+|++.|.+++... .+.|+|||||||+.+.+.|..+++ ...+.+||++++|+.|.
T Consensus 127 ~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~ 182 (265)
T 3g91_A 127 EFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPK--ENSNVSGFLPVERAWID 182 (265)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTG--GGTTSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHh--hcCCCCccCHHHHHHHH
Confidence 9999999988764 368999999999999999999988 45788999999998764
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.94 E-value=3.2e-26 Score=216.84 Aligned_cols=188 Identities=23% Similarity=0.379 Sum_probs=133.3
Q ss_pred CCCcEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 025138 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (257)
Q Consensus 39 ~~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~ 118 (257)
...|||+||||+|++...++.+..+.++|.+++|||||||||+.....++ + ...|.
T Consensus 147 ~~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~----------~------------~~~la-- 202 (467)
T 2j63_A 147 SRMYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEAD----------A------------NATLG-- 202 (467)
T ss_dssp TTEEEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHH----------H------------HHTSS--
T ss_pred CCCeEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccc----------h------------HHHHh--
Confidence 45699999999999876543225799999999999999999987643211 0 01232
Q ss_pred CCCCCeEEEEc--CCCCcceEEEEEccCCCc--c--eeeecCcccc---------------cCCCCCCCEEEEEe-----
Q 025138 119 PFKNYQIWWSL--ADSKYAGTALLVKKCFQP--K--KVSFSLEKTA---------------LKYEPDGRVILAEF----- 172 (257)
Q Consensus 119 ~~~gY~~~~~~--~~~~~~GVAIlsr~~l~p--~--~v~~~l~~~~---------------~~~d~~gr~i~v~~----- 172 (257)
...||.+++.. +..+++|||||+|+++.+ + .+..++.... ...+.++|+|.+++
T Consensus 203 ~~~GY~~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~ 282 (467)
T 2j63_A 203 VVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPD 282 (467)
T ss_dssp CCTTEEEEEECCSSSTTSCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCC
T ss_pred hcCCceEEEecccCCCCcceEEEEEeCCccccccceeeeeccccccccccccccccccccccccCCCCcEEEEEEEeCCc
Confidence 12689877764 345678999999997421 1 1233332100 12456899999988
Q ss_pred -----CCEEEEEEecCCCCCCCccccHHHHH-HHHHHHHHHHHcC--------------------CCCCEEEEecCCCCC
Q 025138 173 -----ETFYLLNTYAPNNGWKEEENSFQRRR-KWDKRIQEFVLQC--------------------SGKPLIWCGDLNVSH 226 (257)
Q Consensus 173 -----~~~~i~~vY~P~~~~~~~~~~~~~r~-~f~~~L~~~l~~~--------------------~~~pvIl~GDFN~~~ 226 (257)
..+.|+|+|+|++.... +++.+|. .|++.|.+++..+ ...|+|||||||+.+
T Consensus 283 ~~~~~~~~~vinvYlP~~~~~~--~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p 360 (467)
T 2j63_A 283 SASSSSRIALVNTYVANSGMGL--TRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAE 360 (467)
T ss_dssp C----CCEEEEEEECCCCCTTS--TTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCC
T ss_pred ccccCceEEEEEEECCCCCcch--HHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCC
Confidence 57999999999986432 4566676 4556676666542 257999999999999
Q ss_pred CCccCCC---cccccCCCCCCCCHHHHhhhh
Q 025138 227 EEIDVSH---PEFFAAAKLNGYVPPNKEVLV 254 (257)
Q Consensus 227 ~~~D~~~---~~~~~~~~~~~~~~~~r~~~~ 254 (257)
.+.|+++ ++ ...+.+||+++||+.|.
T Consensus 361 ~~~D~~~~~~~~--~~~~~~gf~~~er~~~~ 389 (467)
T 2j63_A 361 RDYDRYYAGTFK--SMQECSGFAPEERMSFR 389 (467)
T ss_dssp STTSBCCCSCHH--HHTTSTTSCHHHHHHHH
T ss_pred chhhhccccchh--hcccccccCHHHHHHHH
Confidence 9999987 55 34678999999998764
No 3
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.94 E-value=1.2e-25 Score=201.90 Aligned_cols=179 Identities=34% Similarity=0.684 Sum_probs=128.0
Q ss_pred CCCCcEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 025138 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (257)
Q Consensus 38 ~~~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 117 (257)
....|||+||||+|++...++ .+.++|..++|||||||||+.....+. ..|.
T Consensus 58 ~~~~lrv~t~Nv~g~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------------------------~~l~- 109 (318)
T 1hd7_A 58 KPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLP------------------------AELQ- 109 (318)
T ss_dssp CBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCC---------------------------------
T ss_pred CCCceEEEEEecCcchhhhhh---hHHHHHHhhCCCEEEEEEccCchhhcc------------------------HHHH-
Confidence 356799999999998865542 499999999999999999987643221 0111
Q ss_pred CCCCCC-eEEEEc-C-CCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccH
Q 025138 118 PPFKNY-QIWWSL-A-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSF 194 (257)
Q Consensus 118 ~~~~gY-~~~~~~-~-~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~ 194 (257)
...|| ..++.. . ..|++||||++|++ +..+...++. ...+.++|++.+++..+.|+|+|+|+.... ..++
T Consensus 110 -~~~gy~~~~~~~~~~~~g~~Gvailsr~~--~~~~~~~~~~--~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~--~~~~ 182 (318)
T 1hd7_A 110 -ELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGD--EEHDQEGRVIVAEFDSFVLVTAYVPNAGRG--LVRL 182 (318)
T ss_dssp ----CCCEEEEECC-----CCCEEEEESSC--CSEEEESCSC--GGGSSSSCEEEEECSSCEEEEEECCCCCGG--GTTH
T ss_pred -hcCCCceEEEecCCCCCccceEEEEEcCC--ceeEEecCCC--cccCCCCcEEEEEcCCEEEEEEEcCCCCCc--cccH
Confidence 12689 566654 2 23556999999996 3444444331 124567899999999999999999987642 2356
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCEEEEecCCCCCCCccCCCcccccCCCCCCCCHHHHhhh
Q 025138 195 QRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEVL 253 (257)
Q Consensus 195 ~~r~~f~~~L~~~l~~~-~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~r~~~ 253 (257)
++|.+|++.|.+++... ...|+|||||||+.+.+.|.+++. ...+.+||++++|..|
T Consensus 183 ~~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D~~~~~--~~~~~~g~~~~~~~~~ 240 (318)
T 1hd7_A 183 EYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK--GNKKNAGFTPQERQGF 240 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHH--HHTTSTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhhccChh--hcCCCCCcCHHHHHHH
Confidence 67888888888888653 237999999999999999988776 4467889999998766
No 4
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.94 E-value=4.9e-25 Score=193.35 Aligned_cols=181 Identities=33% Similarity=0.680 Sum_probs=131.6
Q ss_pred CCCCCCcEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 025138 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (257)
Q Consensus 36 ~~~~~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L 115 (257)
......|||+||||+|++...++ .+.++|++++||||||||++.....+. . .|
T Consensus 23 ~~~~~~l~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------~------------------~l 75 (285)
T 2o3h_A 23 SGKPATLKIASWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLP------A------------------EL 75 (285)
T ss_dssp TSCBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCTTSCC------G------------------GG
T ss_pred CCCccceEEEEEecccChhhhhh---hHHHHHHhcCCCEEEEEEeecchhhcc------H------------------HH
Confidence 33456799999999998766542 399999999999999999987653222 0 11
Q ss_pred CCCCCCCC-eEEEEc-C-CCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccc
Q 025138 116 SSPPFKNY-QIWWSL-A-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEEN 192 (257)
Q Consensus 116 ~~~~~~gY-~~~~~~-~-~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~ 192 (257)
. ...|| ..++.. . ..+..||||++|++ +..+...++. ...+.++|++.+++..+.|+|+|+|+.... ..
T Consensus 76 ~--~~~gy~~~~~~~~~~~~g~~Gvailsr~~--~~~~~~~~~~--~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~--~~ 147 (285)
T 2o3h_A 76 Q--ELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGD--EEHDQEGRVIVAEFDSFVLVTAYVPNAGRG--LV 147 (285)
T ss_dssp G--GCGGGCEEEEECBC--CCSCCEEEEESSC--CSEEEESCSC--GGGSSBCCEEEEECSSCEEEEEECCCCCGG--GT
T ss_pred H--hccCCcEEEEecccCCcccceEEEEEccC--hHHeeeccCC--cccCCCCcEEEEEeCCEEEEEEEcCCCCCc--ch
Confidence 1 12688 556554 2 23456999999996 3444443321 124567899988989999999999987642 24
Q ss_pred cHHHHHHHHHHHHHHHHcC-CCCCEEEEecCCCCCCCccCCCcccccCCCCCCCCHHHHhhh
Q 025138 193 SFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEVL 253 (257)
Q Consensus 193 ~~~~r~~f~~~L~~~l~~~-~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~r~~~ 253 (257)
++++|.+|++.|.++++.. ...|+|||||||+.+.+.|.+++. ...+..||+++++..|
T Consensus 148 ~~~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D~~~~~--~~~~~~g~~~~~~~~~ 207 (285)
T 2o3h_A 148 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK--GNKKNAGFTPQERQGF 207 (285)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTT--TCTTSTTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhhccChh--hcCCCCCcCHHHHHHH
Confidence 5666788888888888763 358999999999999999987766 3456789998888765
No 5
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.94 E-value=3.7e-25 Score=190.61 Aligned_cols=174 Identities=23% Similarity=0.401 Sum_probs=127.6
Q ss_pred cEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~ 121 (257)
|||+||||+|++.+. +.+.++|++++|||||||||+.....++ . ..+. ..
T Consensus 2 lrv~t~Nv~g~~~~~----~~i~~~i~~~~~Dii~lQE~~~~~~~~~----------~-------------~~~~---~~ 51 (257)
T 2voa_A 2 LKIATFNVNSIRSRL----HIVIPWLKENKPDILCMQETKVENRKFP----------E-------------ADFH---RI 51 (257)
T ss_dssp EEEEEEECSCGGGTH----HHHHHHHHHHCCSEEEEECCCCCGGGCC----------H-------------HHHH---TT
T ss_pred eEEEEEecCChHHHH----HHHHHHHhhcCCCEEEEEEeecchhhcC----------H-------------HHhh---hC
Confidence 899999999987654 5799999999999999999986542221 0 0111 16
Q ss_pred CCeEEEEcCCCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccHHHHHHHH
Q 025138 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (257)
Q Consensus 122 gY~~~~~~~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~~~r~~f~ 201 (257)
||.+++.. ..+++||||++|+++. .+...++. ...+ ++|++.++++.+.|+|+|+|+.... ...++.+|.+|+
T Consensus 52 gy~~~~~~-~~~~~G~ailsr~~~~--~~~~~~~~--~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~-~~~~~~~r~~~~ 124 (257)
T 2voa_A 52 GYHVVFSG-SKGRNGVAIASLEEPE--DVSFGLDS--EPKD-EDRLIRAKIAGIDVINTYVPQGFKI-DSEKYQYKLQWL 124 (257)
T ss_dssp TCEEEEEE-ETTEEEEEEEESSCCE--EEEESCSS--SSCC-GGGEEEEEETTEEEEEEECCCCSCT-TSHHHHHHHHHH
T ss_pred CCcEEEcC-CCCccEEEEEEccChH--HheecCCC--Cccc-cCcEEEEEECCEEEEEEEeCCCCCC-CcHHHHHHHHHH
Confidence 89877653 4456799999999642 23334432 1134 7889999999999999999987631 123556677888
Q ss_pred HHHHHHHHcC--CCCCEEEEecCCCCCCCccCCCcccccCCCCCCCCHHHHhhhh
Q 025138 202 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEVLV 254 (257)
Q Consensus 202 ~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~r~~~~ 254 (257)
+.|.+++++. ...|+|||||||+.+.+.|.+++. ...+.+|+++++|..|.
T Consensus 125 ~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~ 177 (257)
T 2voa_A 125 ERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPD--KLKNHVCFHEDARRAYK 177 (257)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGG--GCTTSTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChh--HhCCCCCCCHHHHHHHH
Confidence 8898888763 568999999999999999988876 33567889988887653
No 6
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.93 E-value=1.8e-24 Score=185.79 Aligned_cols=175 Identities=27% Similarity=0.462 Sum_probs=128.9
Q ss_pred cEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~ 121 (257)
|||+||||+|++.+. +.+.++|++++||||||||++.....+. . ..+. ..
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~DIv~LQE~~~~~~~~~---------~--------------~~~~---~~ 50 (256)
T 2jc4_A 1 MKITTWNVNSLNVRL----PQVQNLLADNPPDILVLQELKLDQDKFP---------A--------------AALQ---MM 50 (256)
T ss_dssp CEEEEEECSCHHHHH----HHHHHHHHSSCCSEEEEECCCSCGGGSC---------H--------------HHHH---TT
T ss_pred CEEEEEEcCCcHHHH----HHHHHHHHhcCCCEEEEEeeccchhcCC---------H--------------hHHh---hc
Confidence 799999999987665 5799999999999999999987643211 0 1121 16
Q ss_pred CCeEEEEcCCCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccHHHHHHHH
Q 025138 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (257)
Q Consensus 122 gY~~~~~~~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~~~r~~f~ 201 (257)
||.+++.. ..+.+||||++|+++. .+...++. ...+..+|++.++++.+.|+|+|+|+.... ...++.+|.+|+
T Consensus 51 gy~~~~~~-~~~~~G~ailsr~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~-~~~~~~~r~~~~ 124 (256)
T 2jc4_A 51 GWHCVWSG-QKTYNGVAIVSRSVPQ--DVHFGLPA--LPDDPQRRVIAATVSGVRVINVYCVNGEAL-DSPKFKYKEQWF 124 (256)
T ss_dssp TCEEEEEC-CSSSCCEEEEESSCCE--EEEESCTT--STTCCSCCEEEEEETTEEEEEEECCCCCST-TSHHHHHHHHHH
T ss_pred CCeEEECC-CCcceEEEEEECCChH--HheecCCC--CccCCcCcEEEEEeCCEEEEEEEecCCCCC-CcHhHHHHHHHH
Confidence 89877653 4456799999999632 23333432 123467889999999999999999987642 123556677888
Q ss_pred HHHHHHHHcC--CCCCEEEEecCCCCCCCccCCCcccccCCCCCCCCHHHHhhhh
Q 025138 202 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEVLV 254 (257)
Q Consensus 202 ~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~r~~~~ 254 (257)
+.|.+++++. ...|+|||||||+.+.+.|..+++ ...+..|+++++|..|.
T Consensus 125 ~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~ 177 (256)
T 2jc4_A 125 AALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPE--KWHEKIHCSSVERQWFQ 177 (256)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGG--GGTTCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChh--HhCCCCCcCHHHHHHHH
Confidence 8888888753 578999999999999988888766 33567788888887654
No 7
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.93 E-value=7e-25 Score=188.59 Aligned_cols=175 Identities=21% Similarity=0.425 Sum_probs=127.3
Q ss_pred cEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~ 121 (257)
|||+||||+|++...++ .+.++|+.++||||||||++.....+. ..+. ...
T Consensus 2 l~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------------------------~~l~--~~~ 52 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKK---GFYEYIAASGADIVCVQELKAQEADLS------------------------ADMK--NPH 52 (259)
T ss_dssp EEEEEEECSSHHHHHHT---THHHHHHHTTCSEEEEECCCCCGGGCC------------------------HHHH--SGG
T ss_pred cEEEEEeeccHHHHHHh---HHHHHHHhcCCCEEEEEEecchhhccC------------------------hhhc--ccc
Confidence 89999999998766542 499999999999999999986643211 0111 116
Q ss_pred CCeEEEEc-CCCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccHHHHHHH
Q 025138 122 NYQIWWSL-ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (257)
Q Consensus 122 gY~~~~~~-~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~~~r~~f 200 (257)
||.+++.. +..+..||||++|+++ ..+...++. ...+..+|++.++++.+.|+|+|+|+.... ..+..+|.+|
T Consensus 53 gy~~~~~~~~~~~~~G~ailsr~~~--~~~~~~~~~--~~~~~~~r~~~~~~~~~~v~~~h~~~~~~~--~~r~~~~~~~ 126 (259)
T 2jc5_A 53 GMHGHWHCAEKRGYSGVAVYSKRKP--DNVQIGMGI--EEFDREGRFVRCDFGRLSVISLYLPSGSSA--EERQQVKYRF 126 (259)
T ss_dssp GCEEEEECCSSTTCCCEEEEESSCC--SEEEESCSC--HHHHTTCCEEEEEETTEEEEEEECCCCTTC--HHHHHHHHHH
T ss_pred CCeEEEeccCCCCcceEEEEEecCc--eeEEeCCCC--CccCCCCeEEEEEcCCEEEEEEeccCCCCC--cHHHHHHHHH
Confidence 89877664 3345679999999963 233333331 123457899999999999999999988642 2355566678
Q ss_pred HHHHHHHHHcC--CCCCEEEEecCCCCCCCccCCCcccccCCCCCCCCHHHHhhh
Q 025138 201 DKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEVL 253 (257)
Q Consensus 201 ~~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~r~~~ 253 (257)
++.|.+++++. ...|+|||||||+.+.+.|.+++. .....+|++++++..+
T Consensus 127 ~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~--~~~~~~~~~~~~~~~~ 179 (259)
T 2jc5_A 127 LDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWK--GNQKNSGFLPEEREWI 179 (259)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCST--TCTTSTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChh--hcCCCCCcCHHHHHHH
Confidence 88888887753 468999999999999998887665 3456778888887654
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.91 E-value=1.5e-23 Score=181.17 Aligned_cols=178 Identities=22% Similarity=0.387 Sum_probs=123.0
Q ss_pred cEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~ 121 (257)
|||+||||+|++.+. ..+.++|++++||||||||++.....+. . ..+. . .
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~Dii~LQE~~~~~~~~~---------~--------------~~l~--~-~ 50 (268)
T 1ako_A 1 MKFVSFNINGLRARP----HQLEAIVEKHQPDVIGLQETKVHDDMFP---------L--------------EEVA--K-L 50 (268)
T ss_dssp CEEEEEECSCGGGCH----HHHHHHHHHHCCSEEEEECCCCCGGGCC---------H--------------HHHH--H-T
T ss_pred CEEEEEehhHHHHHH----HHHHHHHHHcCCCEEEEEeccCChhhCC---------H--------------hHhc--c-C
Confidence 799999999987643 5799999999999999999986543211 0 0111 1 5
Q ss_pred CCeEEEEcCCCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEe----CCEEEEEEecCCCCCCCccccHHHH
Q 025138 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEENSFQRR 197 (257)
Q Consensus 122 gY~~~~~~~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~----~~~~i~~vY~P~~~~~~~~~~~~~r 197 (257)
||.+++.. ..+..|+||++|+++ ..+...++. ...+..++++.+++ ..+.|+|+|+|+.....+..++..|
T Consensus 51 gy~~~~~~-~~~~~G~ailsr~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r 125 (268)
T 1ako_A 51 GYNVFYHG-QKGHYGVALLTKETP--IAVRRGFPG--DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAK 125 (268)
T ss_dssp TCEEEEEE-ETTEEEEEEEESSCC--SEEEESSTT--CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHH
T ss_pred CCcEEEeC-CCCcceEEEEEecCc--ceeeeCCCC--cccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHH
Confidence 89877653 446689999999963 333333431 01123467777776 2799999999987643222345567
Q ss_pred HHHHHHHHHHHHcC--CCCCEEEEecCCCCCCCccCCCcc----cccCCCCCCCCHHHHhhhh
Q 025138 198 RKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPE----FFAAAKLNGYVPPNKEVLV 254 (257)
Q Consensus 198 ~~f~~~L~~~l~~~--~~~pvIl~GDFN~~~~~~D~~~~~----~~~~~~~~~~~~~~r~~~~ 254 (257)
..|++.|.+++++. ...|+|||||||+.+.+.|...+. .+......+|+++||+.+.
T Consensus 126 ~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 188 (268)
T 1ako_A 126 AQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMD 188 (268)
T ss_dssp HHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhccCCCcCcCHHHHHHHH
Confidence 78888898888763 568999999999999988876432 1111256788888876553
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.90 E-value=6e-23 Score=174.09 Aligned_cols=148 Identities=25% Similarity=0.373 Sum_probs=104.8
Q ss_pred CCCCcEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 025138 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (257)
Q Consensus 38 ~~~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 117 (257)
..+.|||+||||+|++...++ ..+.++|++++|||||||||+.....+ ..+.
T Consensus 4 ~~~~lri~t~Nv~g~~~~~~~--~~~~~~i~~~~~DIv~LQE~~~~~~~~-------------------------~~l~- 55 (238)
T 1vyb_A 4 SNSHITILTLNINGLNSAIKR--HRLASWIKSQDPSVCCIQETHLTCRDT-------------------------HRLK- 55 (238)
T ss_dssp CCCCEEEEEEECSCCCSHHHH--HHHHHHHHHHCCSEEEEECCCCCTTSG-------------------------GGCC-
T ss_pred CCCcceEEEEecccCCchhhH--HHHHHHHHHcCCCEEEEecccCCCCCc-------------------------hhHh-
Confidence 356799999999998866543 679999999999999999998654321 1121
Q ss_pred CCCCCCeEEE-EcCCCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEe----CCEEEEEEecCCCCCCCccc
Q 025138 118 PPFKNYQIWW-SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEEN 192 (257)
Q Consensus 118 ~~~~gY~~~~-~~~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~----~~~~i~~vY~P~~~~~~~~~ 192 (257)
..||..++ ..+..+.+||||++|+++ |..+.. . ..+.++|++.+++ ..+.|+|+|+|+...
T Consensus 56 --~~~y~~~~~~~~~~~~~Gvail~r~~~-~~~~~~-~-----~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~----- 121 (238)
T 1vyb_A 56 --IKGWRKIYQANGKQKKAGVAILVSDKT-DFKPTK-I-----KRDKEGHYIMVKGSIQQEELTILNIYAPNTGA----- 121 (238)
T ss_dssp --CTTCCEEEEECCSSSSCCEEEEECTTC-CCEEEE-E-----EECTTSSEEEEEEEETTEEEEEEEEECCSSSH-----
T ss_pred --hCCCCeEEEccCCCCCceEEEEEeCCC-Cccccc-e-----eEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc-----
Confidence 26887543 433345679999999864 332221 1 1345788887765 279999999998652
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCEEEEecCCCCCCCccCC
Q 025138 193 SFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 232 (257)
Q Consensus 193 ~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~~D~~ 232 (257)
.+|++.+.+.+.+....|+|||||||+.+.+.|..
T Consensus 122 -----~~~~~~l~~~l~~~~~~~~Il~GDFN~~~~~~~~~ 156 (238)
T 1vyb_A 122 -----PRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRS 156 (238)
T ss_dssp -----HHHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGBT
T ss_pred -----HHHHHHHHHHHHhccCCCEEEEccCCCCCCccccC
Confidence 13556666666554568999999999988877754
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.87 E-value=4.5e-22 Score=172.74 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=92.8
Q ss_pred CcEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCC
Q 025138 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (257)
Q Consensus 41 ~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~ 120 (257)
.|||+||||||++.+.+ .+.++|++++|||||||||+..
T Consensus 7 ~mki~s~Nvn~~r~~~~----~l~~~l~~~~~DIl~LQEt~~~------------------------------------- 45 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATR----ELPSIARDLGLDIVLVQEQYSM------------------------------------- 45 (240)
T ss_dssp EEEEEEEECTTCHHHHH----THHHHHHHHTCSEEEEESCCTT-------------------------------------
T ss_pred cceEEEEecCccHHHHH----HHHHHHHHcCCCEEEeecceEc-------------------------------------
Confidence 58999999999998764 5999999999999999999621
Q ss_pred CCCeEEEEcCCCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCCCCCccccHHHHHHH
Q 025138 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (257)
Q Consensus 121 ~gY~~~~~~~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~~~~~~~~~~~r~~f 200 (257)
.||. |.. .+++||||+++.+..|..+...+ .+..++++.+++..++|+|+|+|++... +++.+|
T Consensus 46 ~gy~--~~~--~~~~gvail~~~~~~~~~~~~~~------~~~~~~~i~i~~~~i~i~svY~P~~~~~------~~~~~~ 109 (240)
T 2ei9_A 46 VGFL--AQC--GAHPKAGVYIRNRVLPCAVLHHL------SSTHITVVHIGGWDLYMVSAYFQYSDPI------DPYLHR 109 (240)
T ss_dssp SSSE--ECC--SSSCSEEEEESSTTSCEEECGGG------CCSSEEEEEETTTTEEEEEEECCTTSCS------HHHHHH
T ss_pred CCce--Eec--cCCCCEEEEEecCCcceeeeccc------CCCCEEEEEEeeccEEEEEEEcCCCCch------hHHHHH
Confidence 3676 322 24689999999853343322111 1234456666667899999999998642 346677
Q ss_pred HHHHHHHHHcCCCCCEEEEecCCCCCCC
Q 025138 201 DKRIQEFVLQCSGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 201 ~~~L~~~l~~~~~~pvIl~GDFN~~~~~ 228 (257)
++.|...+ ...++|||||||+.+..
T Consensus 110 l~~l~~~~---~~~~~Ii~GDfN~~~~~ 134 (240)
T 2ei9_A 110 LGNILDRL---RGARVVICADTNAHSPL 134 (240)
T ss_dssp HHHHHHHT---TTSCEEEEEECCCCCGG
T ss_pred HHHHHHhc---CCCcEEEEEeccccccc
Confidence 77665443 34799999999998743
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.83 E-value=9.2e-20 Score=156.82 Aligned_cols=141 Identities=17% Similarity=0.172 Sum_probs=92.3
Q ss_pred CCCcEEEEEeCCcchhhhhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 025138 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (257)
Q Consensus 39 ~~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~ 118 (257)
...|||+||||+|++... +.+.++|++++|||||||||+...... +.
T Consensus 17 ~~~lri~s~Nv~~~~~~~----~~l~~~i~~~~~DIv~lQE~~~~~~~~---------------------------~~-- 63 (245)
T 1wdu_A 17 GPPYRVLQANLQRKKLAT----AELAIEAATRKAAIALIQEPYVGGAKS---------------------------MK-- 63 (245)
T ss_dssp -CCEEEEEEECTTCHHHH----HHHHHHHHHHTCSEEEEESCCC---------------------------------C--
T ss_pred CcceeeeeeeccccHHHH----HHHHHHHhhcCCCEEEEEcccccCCcc---------------------------cc--
Confidence 457999999999987654 579999999999999999998764311 10
Q ss_pred CCCCCeEEEEcC-CCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEe----CCEEEEEEecCCCCCCCcccc
Q 025138 119 PFKNYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEENS 193 (257)
Q Consensus 119 ~~~gY~~~~~~~-~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~----~~~~i~~vY~P~~~~~~~~~~ 193 (257)
...||.+++... ..+.+|+||++++. +..+. .++. .+.. .++.+.+ ..+.|+|+|+|++..
T Consensus 64 ~~~gy~~~~~~~~~~~~~GvaIl~~~~--~~~~~-~~~~----~~~~-~~~~~~i~~~~~~~~v~~vy~p~~~~------ 129 (245)
T 1wdu_A 64 GFRGVRVFQSTAQGDGTVKAAIAVFDH--DLDVI-QYPQ----LTTN-NIVVVGIRTRAWEITLVSYYFEPDKP------ 129 (245)
T ss_dssp CCSSCEEEECCCCTTCCCCEEEEECCS--SCEEE-ECTT----TCCS-SEEEEEEECSSCEEEEEEEECCTTSC------
T ss_pred CCCcceEeccccccCCCCCeEEEEECC--CcceE-Eecc----cccC-CEEEEEEEcCCCcEEEEEEEeCCCCC------
Confidence 126887665432 23467999999652 22221 2221 1222 2333333 379999999998753
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEecCCCCCCCc
Q 025138 194 FQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEI 229 (257)
Q Consensus 194 ~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~~~~ 229 (257)
+..|++.|..+++.....|+|||||||+.+..+
T Consensus 130 ---~~~~~~~l~~~~~~~~~~~~Ii~GDfN~~~~~~ 162 (245)
T 1wdu_A 130 ---IESYLEQIKRVERKMGPKRLIFGGDANAKSTWW 162 (245)
T ss_dssp ---SHHHHHHHHHHHHTTCSSSEEEEEECCCCCGGG
T ss_pred ---HHHHHHHHHHHHHHhCCCcEEEEeccccCcccC
Confidence 124566677776654557999999999987543
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.83 E-value=5.9e-20 Score=168.52 Aligned_cols=163 Identities=23% Similarity=0.261 Sum_probs=97.7
Q ss_pred cCCCCCCCCCCcEEEEEeCCcchhhhh-cCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHH
Q 025138 31 TSSEENSKKDPLKFVTWNANSLLLRVK-NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKL 109 (257)
Q Consensus 31 ~~~~~~~~~~~lrIiTwNv~gl~~~~~-~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 109 (257)
..+.+..+...|||+||||+|+..... .+...|+++|+.++||||||||+.... + ..|
T Consensus 109 ~~~~~~~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~--~-------~~l------------ 167 (362)
T 4gew_A 109 VMTAEDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRD--L-------API------------ 167 (362)
T ss_dssp ----CTTTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTT--C-------HHH------------
T ss_pred CCCCCCCCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhH--h-------HHH------------
Confidence 334455667789999999999853211 112679999999999999999995432 1 111
Q ss_pred HHHHhhCCCCCCCCeEEEEcCCCCcceEEEEEccCCCcceeeecCcccccCCCCCCC-EEEEE--eC--CEEEEEEecCC
Q 025138 110 ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAE--FE--TFYLLNTYAPN 184 (257)
Q Consensus 110 ~~~~~L~~~~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr-~i~v~--~~--~~~i~~vY~P~ 184 (257)
..+ ..+|.+++. +..+++|+|||+|+++..... ..++. .....++ ++.+. ++ .+.|+|+|+++
T Consensus 168 ---~~~----~~~y~~~~~-~~~~~~G~aIlsk~~i~~~~~-~~~~~---~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s 235 (362)
T 4gew_A 168 ---DKL----QSLYKIYYS-NKGCQYYTAILVSKMFDVEKH-DVIHF---QNSGMYRTLQILEGSIGGLKVFLLNTHLES 235 (362)
T ss_dssp ---HGG----GGTEEEEES-STTSSSEEEEEEETTEEEEEE-EEEEC---TTCSSCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred ---HHh----cCCceEEeC-CCCCCceEEEEEeccCccccc-cccCC---CCCcccceEEEEEEEECCEEEEEEEecCCc
Confidence 222 156766543 455678999999985321111 11111 1122333 34444 43 69999999988
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHc----CCCCCEEEEecCCCCCCCccC
Q 025138 185 NGWKEEENSFQRRRKWDKRIQEFVLQ----CSGKPLIWCGDLNVSHEEIDV 231 (257)
Q Consensus 185 ~~~~~~~~~~~~r~~f~~~L~~~l~~----~~~~pvIl~GDFN~~~~~~D~ 231 (257)
.... ...|..++..+...+.. ..+.|+|||||||..+.+.+.
T Consensus 236 ~~~~-----~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~ 281 (362)
T 4gew_A 236 TREH-----RPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSR 281 (362)
T ss_dssp SGGG-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCC
T ss_pred cccc-----hhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccch
Confidence 6532 22344444444444432 356899999999988765433
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.82 E-value=1e-19 Score=154.95 Aligned_cols=155 Identities=21% Similarity=0.225 Sum_probs=91.7
Q ss_pred CCCCCcEEEEEeCCcchhhhh-cCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 025138 37 SKKDPLKFVTWNANSLLLRVK-NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (257)
Q Consensus 37 ~~~~~lrIiTwNv~gl~~~~~-~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L 115 (257)
.+.++|||+||||+|+..... .+...+.++|+.++||||||||+..... ..+ ..+
T Consensus 9 ~~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~---------~~l---------------~~~ 64 (256)
T 4fva_A 9 LKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDL---------API---------------DKL 64 (256)
T ss_dssp CTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTC---------HHH---------------HGG
T ss_pred CCCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChhHh---------HHH---------------HHh
Confidence 456789999999998753221 1126799999999999999999964321 111 222
Q ss_pred CCCCCCCCeEEEEcCCCCcceEEEEEccCCCcceeeecCcccccCCCCCCC-EEEEE--eC--CEEEEEEecCCCCCCCc
Q 025138 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAE--FE--TFYLLNTYAPNNGWKEE 190 (257)
Q Consensus 116 ~~~~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr-~i~v~--~~--~~~i~~vY~P~~~~~~~ 190 (257)
.+|..++..+..+..|++|++++++... ....++. ......+ ++.+. ++ .+.|+|+|+++.....
T Consensus 65 -----~~~~~~~~~~~~~~~g~~il~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~- 134 (256)
T 4fva_A 65 -----QSLYKIYYSNKGCQYYTAILVSKMFDVE-KHDVIHF---QNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHR- 134 (256)
T ss_dssp -----GGTEEEEESSTTSSSEEEEEEETTCEEE-EEEEEEC---TTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGH-
T ss_pred -----cCCceEeecCCCCCcceEEEEeecccce-ecccccC---CCCcccceeEEEEEEeCCeEEEEEEecCCCCCcch-
Confidence 3344444445556779999999864211 1111111 1112222 33333 33 6999999998765321
Q ss_pred cccHHHHHHHHHHHHHH----HHcCCCCCEEEEecCCCCCCCc
Q 025138 191 ENSFQRRRKWDKRIQEF----VLQCSGKPLIWCGDLNVSHEEI 229 (257)
Q Consensus 191 ~~~~~~r~~f~~~L~~~----l~~~~~~pvIl~GDFN~~~~~~ 229 (257)
..+..+++.+.+. .....+.|+|+|||||..+.+.
T Consensus 135 ----~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~ 173 (256)
T 4fva_A 135 ----PQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEV 173 (256)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGC
T ss_pred ----HHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchh
Confidence 1222223333332 2234578999999999876443
No 14
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.77 E-value=4.1e-18 Score=142.70 Aligned_cols=150 Identities=18% Similarity=0.278 Sum_probs=91.2
Q ss_pred CCcEEEEEeCCcchhhhh-cCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 025138 40 DPLKFVTWNANSLLLRVK-NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~~-~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~ 118 (257)
.+|||+||||+|+..... .+...+.++|++++||||||||+... ++. .+...
T Consensus 2 ~~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~------------~~~-----------~l~~~---- 54 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPA------------YVQ-----------YLKKR---- 54 (250)
T ss_dssp CCEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHH------------HHH-----------HHHHH----
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHH------------HHH-----------HHHHh----
Confidence 479999999998754211 11267999999999999999999532 110 01112
Q ss_pred CCCCCeEEEEcCCCCcceEEEEEccCCCcceee-ecCcccccCCCCCCC-EEEEEe--C--CEEEEEEecCCCCCCCccc
Q 025138 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEKTALKYEPDGR-VILAEF--E--TFYLLNTYAPNNGWKEEEN 192 (257)
Q Consensus 119 ~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~~v~-~~l~~~~~~~d~~gr-~i~v~~--~--~~~i~~vY~P~~~~~~~~~ 192 (257)
.++..++.....+.+|++++++.++...... ...+ ....++ ++.+.+ . .+.++++|+++...
T Consensus 55 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~----- 122 (250)
T 4f1h_A 55 --AVSYLFFEGSDDGYFTGIMLRKSRVKFLESEIICFP-----TTQMMRNLLIAQVTFSGQKLYLMTSHLESCKN----- 122 (250)
T ss_dssp --CTTEEEEESCSSSSEEEEEEETTTCEEEEEEEEECT-----TCSSCCEEEEEEEEETTEEEEEEECBCCCSGG-----
T ss_pred --ccCceeecccccccCceeEEeeccccceeccccccc-----CccccceEEEEEEecCCcEEEEeccccccccc-----
Confidence 3344444444445667777777654221111 1111 122333 333333 3 68899999987653
Q ss_pred cHHHHHHHHHHHHHHHHcC-CCCCEEEEecCCCCCCC
Q 025138 193 SFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 193 ~~~~r~~f~~~L~~~l~~~-~~~pvIl~GDFN~~~~~ 228 (257)
....+..+++.+.+++++. ...|+|||||||+.+.+
T Consensus 123 ~~~~r~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~ 159 (250)
T 4f1h_A 123 QSQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAE 159 (250)
T ss_dssp GHHHHHHHHHHHHHHHHHSCTTEEEEEEEECCCCHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCcc
Confidence 2234556677777877764 45799999999987644
No 15
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.75 E-value=2.4e-18 Score=146.15 Aligned_cols=151 Identities=22% Similarity=0.251 Sum_probs=87.3
Q ss_pred CCCcEEEEEeCCcchhhh-hcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 025138 39 KDPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (257)
Q Consensus 39 ~~~lrIiTwNv~gl~~~~-~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 117 (257)
..+|||+||||+|+.... ..+...+.++|++++||||||||+... ++. .+...+
T Consensus 7 ~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~------------~~~-----------~l~~~~-- 61 (256)
T 4gz1_A 7 SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPP------------YCA-----------YLKKRA-- 61 (256)
T ss_dssp GGEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHH------------HHH-----------HHHHHC--
T ss_pred CCcEEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHH------------HHH-----------HHHhhc--
Confidence 457999999999875421 111267999999999999999998532 110 011221
Q ss_pred CCCCCCeEEEEcCCCCcceEEEEEccCCCccee-eecCcccccCCCCCCC-EEEEEe--C--CEEEEEEecCCCCCCCcc
Q 025138 118 PPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV-SFSLEKTALKYEPDGR-VILAEF--E--TFYLLNTYAPNNGWKEEE 191 (257)
Q Consensus 118 ~~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~~v-~~~l~~~~~~~d~~gr-~i~v~~--~--~~~i~~vY~P~~~~~~~~ 191 (257)
.+|.+.. ... +..|.+++++++ +... ...... ......++ ++.+.+ + .+.|+|+|+++...
T Consensus 62 ---~~~~~~~-~~~-~~~~~~~l~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~---- 128 (256)
T 4gz1_A 62 ---ASYTIIT-GNE-EGYFTAILLKKG--RVKFKSQEIIP--FPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTRE---- 128 (256)
T ss_dssp ---TTEEEEE-SCS-SSSEEEEEEETT--TEEEEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGG----
T ss_pred ---cccceee-ccc-cCCceEEEEEec--cccceeccccc--CCcccccceEEEEEEEeCCEEEEEEeeccccccc----
Confidence 3444332 233 334555565553 2211 111110 01112223 333333 3 69999999987653
Q ss_pred ccHHHHHHHHHHHHHHHHcC-CCCCEEEEecCCCCCCC
Q 025138 192 NSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 192 ~~~~~r~~f~~~L~~~l~~~-~~~pvIl~GDFN~~~~~ 228 (257)
....+.+++..+.+.+++. .+.|+|+|||||+.+.+
T Consensus 129 -~~~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~ 165 (256)
T 4gz1_A 129 -HSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQE 165 (256)
T ss_dssp -GHHHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHH
T ss_pred -chhhhhHHHHHHhhhhhhccCcceEEEeCccCCCcch
Confidence 2233556666677777654 46799999999986543
No 16
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.71 E-value=9.1e-17 Score=138.23 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=93.5
Q ss_pred CCcEEEEEeCCcchhhh-hcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 025138 40 DPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~-~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~ 118 (257)
..|||+||||++..... +.....+.++|++++||||||||+......-. ....++.|.++.. ....|...
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~----~~~~~~~d~~~~~-----~~~~l~~~ 72 (266)
T 3teb_A 2 NAMKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKI----IFDDIREENYAWV-----LLETLQKY 72 (266)
T ss_dssp -CEEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCE----EETTEETTCHHHH-----HHHHHTTT
T ss_pred CceEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccc----cccccccccHHHH-----HHHHHHHh
Confidence 57999999998764321 11126789999999999999999975432100 0001111111000 01334321
Q ss_pred CCCCCeEEEEc---C-CCCcceEEEEEccCCCcceeeecCcccccCCCCC-CCEEEEEe--C--CEEEEEEecCCCCCCC
Q 025138 119 PFKNYQIWWSL---A-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPD-GRVILAEF--E--TFYLLNTYAPNNGWKE 189 (257)
Q Consensus 119 ~~~gY~~~~~~---~-~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~-gr~i~v~~--~--~~~i~~vY~P~~~~~~ 189 (257)
...+|.+++.. + ..+..|+||++|.++... ....++........+ .+++.+.+ + .+.|+|+|+++.....
T Consensus 73 ~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~ 151 (266)
T 3teb_A 73 TDTDYYLHWSNSHIGFGKYNEGVAVITRHKIKAE-DEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCET 151 (266)
T ss_dssp CCSCCEEEEEEEEECSTTEEEEEEEEESSCCSEE-EEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTT
T ss_pred CCCCeEEEEeccccCccccCCeEEEEECceecCc-eeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCCh
Confidence 11257765432 2 233569999999964211 122232100011112 33455555 2 7999999998764321
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCCCEEEEecCCCCC
Q 025138 190 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSH 226 (257)
Q Consensus 190 ~~~~~~~r~~f~~~L~~~l~~~~~~pvIl~GDFN~~~ 226 (257)
. .|..+++.|.+.+.. ..|+|||||||+.+
T Consensus 152 ~-----~r~~q~~~l~~~~~~--~~~~il~GDfN~~~ 181 (266)
T 3teb_A 152 E-----DMGKNIQTILNRTQN--SNLKILMGDFNTDA 181 (266)
T ss_dssp C-----CHHHHHHHHHTSSCS--CCEEEEEEECCCCT
T ss_pred H-----HHHHHHHHHHHHHhc--CCcEEEEeECCCCC
Confidence 1 144555556555543 68999999999987
No 17
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.68 E-value=1.2e-16 Score=137.65 Aligned_cols=151 Identities=20% Similarity=0.201 Sum_probs=91.3
Q ss_pred cEEEEEeCCcchhhhh-----cCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhC
Q 025138 42 LKFVTWNANSLLLRVK-----NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~-----~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~ 116 (257)
|||+||||++...... .+...+.++|+.++||||||||+... ++. + +...
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~------------~~~-~-----------l~~~- 55 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPN------------QVR-D-----------LKAY- 55 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHH------------HHH-H-----------HHHH-
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHH------------HHH-H-----------HHhc-
Confidence 7999999998764321 11267999999999999999999732 110 0 1121
Q ss_pred CCCCCCCeEEEEcCC--CCcceEEEEEccC-CCccee-eecCcccccCC-----CCCCCEE-EEEe------CCEEEEEE
Q 025138 117 SPPFKNYQIWWSLAD--SKYAGTALLVKKC-FQPKKV-SFSLEKTALKY-----EPDGRVI-LAEF------ETFYLLNT 180 (257)
Q Consensus 117 ~~~~~gY~~~~~~~~--~~~~GVAIlsr~~-l~p~~v-~~~l~~~~~~~-----d~~gr~i-~v~~------~~~~i~~v 180 (257)
.||.++..... .+..|+||++|.. +..... ...++...... ....|.+ .+.+ ..+.|+|+
T Consensus 56 ----l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~ 131 (257)
T 3l1w_A 56 ----TTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINV 131 (257)
T ss_dssp ----SSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEE
T ss_pred ----CCCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEEe
Confidence 48876654332 3456999999964 211111 11122100000 1234543 3443 26999999
Q ss_pred ecCCCCCCCccccHHHHHHHHHHHHHHHHc-CCCCCEEEEecCCCCCCC
Q 025138 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 181 Y~P~~~~~~~~~~~~~r~~f~~~L~~~l~~-~~~~pvIl~GDFN~~~~~ 228 (257)
|+++... ..|..+++.|.+++++ ....|+|||||||+.+.+
T Consensus 132 Hl~~~~~-------~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~~~~~ 173 (257)
T 3l1w_A 132 HLDHISA-------HARLAGMTVILEELHDKIAQYPTLLMGDFNAESGE 173 (257)
T ss_dssp ECCSSCH-------HHHHHHHHHHHHHTHHHHHHSCEEEEEECCCCTTS
T ss_pred CCCCCCH-------HHHHHHHHHHHHHHHHHcCCCCEEEEeeCCCCCCc
Confidence 9976531 2355667777777762 222399999999997754
No 18
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.67 E-value=4.8e-16 Score=136.78 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=93.2
Q ss_pred CCcEEEEEeCCcchhhh------hcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHH
Q 025138 40 DPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMR 113 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~------~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 113 (257)
..|||+||||+++.... ..+.+.+...+...+||||||||+..... . ..+ ..
T Consensus 9 ~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~-~-------~~l--------------~~ 66 (301)
T 1zwx_A 9 GNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSA-S-------HRL--------------LN 66 (301)
T ss_dssp CSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHH-H-------HHH--------------HH
T ss_pred CceEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHH-H-------HHH--------------HH
Confidence 47999999999863210 10114566677889999999999974321 0 001 11
Q ss_pred hhCCCCCCCCeEEEEc---------------CCCCcceEEEEEccCCCcceeeecCcccccCCCCCCC-EEEEEe--C--
Q 025138 114 ALSSPPFKNYQIWWSL---------------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF--E-- 173 (257)
Q Consensus 114 ~L~~~~~~gY~~~~~~---------------~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr-~i~v~~--~-- 173 (257)
.|.. . .+|.+.+.. ...+..|+||+||+++... ....++..........| ++.+++ +
T Consensus 67 ~l~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ailSr~pi~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~g~ 143 (301)
T 1zwx_A 67 NLRE-M-YPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEK-SQHIFQRGGGADRLSNKGFAYVKIMKNGK 143 (301)
T ss_dssp HTTT-T-CCEECCCTTSCSTTCSEEEC-----CCBCCCCEEEESSCEEEE-EEEECSCCCGGGGGBCCEEEEEEEEETTE
T ss_pred HHhh-c-CCccccccCCccccccccccccccccccCCCEEEEecCCcccc-eEEEecCCCCcccccCCCeEEEEEEECCE
Confidence 2221 1 223211110 0124579999999953211 11122210000011233 455555 2
Q ss_pred CEEEEEEecCCCCCCCc-cccHHHHHHHHHHHHHHHHcC---CCCCEEEEecCCCCCCCc
Q 025138 174 TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEI 229 (257)
Q Consensus 174 ~~~i~~vY~P~~~~~~~-~~~~~~r~~f~~~L~~~l~~~---~~~pvIl~GDFN~~~~~~ 229 (257)
.+.|+|+|+++...... ......|..+++.|.+++++. .+.|+|||||||+.+.+.
T Consensus 144 ~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~ 203 (301)
T 1zwx_A 144 PYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTD 203 (301)
T ss_dssp EEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSH
T ss_pred EEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCcH
Confidence 69999999987643100 013445777888888888762 357999999999988764
No 19
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.65 E-value=1.5e-15 Score=133.69 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=91.1
Q ss_pred CCCcEEEEEeCCcchhhh------hcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 025138 39 KDPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112 (257)
Q Consensus 39 ~~~lrIiTwNv~gl~~~~------~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (257)
...|||+||||+++.... ..+.+.+..++...+||||||||+..... . ..+ .
T Consensus 7 ~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~-~-------~~l--------------~ 64 (306)
T 2ddr_A 7 NDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSA-S-------DRL--------------L 64 (306)
T ss_dssp CCEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHH-H-------HHH--------------H
T ss_pred CCEEEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHH-H-------HHH--------------H
Confidence 457999999999874210 00014566667788999999999964321 0 001 1
Q ss_pred HhhCC-----------CCCCCCeEEEEc---CCCCcceEEEEEccCCCcceeeecCcccccCCC-CCCC-EEEEEe--C-
Q 025138 113 RALSS-----------PPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE-PDGR-VILAEF--E- 173 (257)
Q Consensus 113 ~~L~~-----------~~~~gY~~~~~~---~~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d-~~gr-~i~v~~--~- 173 (257)
..|.. ....||...+.. ...+.+|+||+||+++... ....++.. ...+ ...| ++.+++ +
T Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ailSr~pi~~~-~~~~~~~~-~~~~~~~~r~~~~~~i~~~g 142 (306)
T 2ddr_A 65 GNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEK-IQYVFAKG-CGPDNLSNKGFVYTKIKKND 142 (306)
T ss_dssp HHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEE-EEEECSCC-C----CCCCEEEEEEEEETT
T ss_pred HHHhhhCCceeeccCcccccccccccccccccCccCCeEEEEECCCcccc-cEEEcCCC-CCcchhcCCCeEEEEEEeCC
Confidence 11210 000123322211 1124579999999953211 11122210 0011 2344 455555 3
Q ss_pred -CEEEEEEecCCCCCCCc-cccHHHHHHHHHHHHHHHHcC---CCCCEEEEecCCCCCC
Q 025138 174 -TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHE 227 (257)
Q Consensus 174 -~~~i~~vY~P~~~~~~~-~~~~~~r~~f~~~L~~~l~~~---~~~pvIl~GDFN~~~~ 227 (257)
.+.|+|+|+++...... ......|..+++.|.++++.. ...|+|||||||+.+.
T Consensus 143 ~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~ 201 (306)
T 2ddr_A 143 RFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKI 201 (306)
T ss_dssp EEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCT
T ss_pred EEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcc
Confidence 69999999987642100 013445777888888888763 3579999999999884
No 20
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.64 E-value=2.2e-15 Score=130.45 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=92.2
Q ss_pred CCcEEEEEeCCcchhhh-----hcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 025138 40 DPLKFVTWNANSLLLRV-----KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~-----~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (257)
.+|||+||||++..... ..+...+.++|+..+||||||||+.... +. + +.+.
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~------------~~-~----------l~~~ 58 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQ------------FQ-D----------LRAG 58 (267)
T ss_dssp EEEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHH------------HH-H----------HHHH
T ss_pred CcEEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHH------------HH-H----------HHHh
Confidence 46999999999875311 1123789999999999999999997321 10 0 1122
Q ss_pred hCCCCCCCCeEEEEcCCC---CcceEEEEEccCCCcce-e-eecCcccccC-----CC-CCCCE-EEEEeC------CEE
Q 025138 115 LSSPPFKNYQIWWSLADS---KYAGTALLVKKCFQPKK-V-SFSLEKTALK-----YE-PDGRV-ILAEFE------TFY 176 (257)
Q Consensus 115 L~~~~~~gY~~~~~~~~~---~~~GVAIlsr~~l~p~~-v-~~~l~~~~~~-----~d-~~gr~-i~v~~~------~~~ 176 (257)
| .+|.++...... +..|+||++|..--|+. . .+.++..... ++ ...|. +.+.+. .+.
T Consensus 59 l-----~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~ 133 (267)
T 3g6s_A 59 L-----PEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFM 133 (267)
T ss_dssp C-----TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEE
T ss_pred c-----cCCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCCCCEEE
Confidence 2 578775433221 23359999654311221 1 1112210000 01 23453 334431 699
Q ss_pred EEEEecCCCCCCCccccHHHHHHHHHHHHHHHHcC-CCCCEEEEecCCCCCCC
Q 025138 177 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 177 i~~vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~-~~~pvIl~GDFN~~~~~ 228 (257)
|+|+|+++... ..|.++++.|.+.+++. ...|+|||||||+.+.+
T Consensus 134 v~~~Hl~~~~~-------~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~~~~~ 179 (267)
T 3g6s_A 134 AVNTHFDHVGE-------EARRQSALLIIRKIKEIVGERPAVVTGDFNVTDAS 179 (267)
T ss_dssp EEEEECCSSCH-------HHHHHHHHHHHHHHHHHTTTSCEEEEEECSSCTTS
T ss_pred EEEeCCCCCCH-------HHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCCC
Confidence 99999976541 23556667777777764 36899999999997755
No 21
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.63 E-value=2e-15 Score=135.30 Aligned_cols=165 Identities=17% Similarity=0.158 Sum_probs=93.4
Q ss_pred CCCCcEEEEEeCCcchhh------hhcCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHH
Q 025138 38 KKDPLKFVTWNANSLLLR------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (257)
Q Consensus 38 ~~~~lrIiTwNv~gl~~~------~~~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (257)
....|||+||||+++... ...+...+...+...+||||||||+...... ..+
T Consensus 26 ~~~~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~--------~~l-------------- 83 (317)
T 3i41_A 26 DDTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGAS--------DKL-------------- 83 (317)
T ss_dssp --CCCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHH--------HHH--------------
T ss_pred CCCceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHH--------HHH--------------
Confidence 456899999999986321 0111145677777899999999999643210 011
Q ss_pred HHhhCCCCCCCCeEEEEcCC-C--------------CcceEEEEEccCCCcceeeecCcccccCCC-CCCC-EEEEEe--
Q 025138 112 MRALSSPPFKNYQIWWSLAD-S--------------KYAGTALLVKKCFQPKKVSFSLEKTALKYE-PDGR-VILAEF-- 172 (257)
Q Consensus 112 ~~~L~~~~~~gY~~~~~~~~-~--------------~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d-~~gr-~i~v~~-- 172 (257)
.+.|.. ..+|.+.+.... . ..+|++||||.++.... ...++.. ...+ ...| ++.+++
T Consensus 84 ~~~L~~--~~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~-~~~~~~~-~~~d~~~~r~~~~~~i~~ 159 (317)
T 3i41_A 84 LSNVKK--EYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKI-QHVFKSG-CGFDNDSNKGFVYTKIEK 159 (317)
T ss_dssp HHHTTT--TCCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEEESSCEEEEE-EEECSCC-CSSGGGBCCEEEEEEEEE
T ss_pred HHHHHH--hCCcccccCCccccCccCcccccccccccCCccEEEeCCCCccce-eEECCCC-CCcccccCcceEEEEEEE
Confidence 133421 123332111100 0 01599999999642211 1122210 0011 1233 344444
Q ss_pred C--CEEEEEEecCCCCCCCc-cccHHHHHHHHHHHHHHHHcC---CCCCEEEEecCCCCCCC
Q 025138 173 E--TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 173 ~--~~~i~~vY~P~~~~~~~-~~~~~~r~~f~~~L~~~l~~~---~~~pvIl~GDFN~~~~~ 228 (257)
+ .+.|+|+|+++...... ......|..+++.|.++++.. .+.|+|||||||..+.+
T Consensus 160 ~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s 221 (317)
T 3i41_A 160 NGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT 221 (317)
T ss_dssp TTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS
T ss_pred CCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC
Confidence 3 69999999987542100 123456778888888888863 46799999999999866
No 22
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.58 E-value=1.2e-14 Score=126.42 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=98.8
Q ss_pred CCcEEEEEeCCcchhhhhcCc-hHHHHHHhhcC-CcEEEEecccCCC------CCC--CCCCccccccchhhhhhHHHHH
Q 025138 40 DPLKFVTWNANSLLLRVKNNW-PEFSNFITTFD-PDVIALQEVRMPA------AGS--KDAPKNHQELKDDTKASREEKL 109 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~~~~~-~~l~~~l~~~~-~DIi~LQEt~~~~------~~~--~~~~~~~~~l~~~~~~~~~~~~ 109 (257)
..+||+|||++|........| ..+..+|...+ +|||+|||+-.-+ ... +.. .+-.++.
T Consensus 14 ~~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g-~~v~E~~----------- 81 (262)
T 2f1n_A 14 TDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPG-IPVRELI----------- 81 (262)
T ss_dssp GGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSS-CCCEEEE-----------
T ss_pred ceeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCC-cCHHHHH-----------
Confidence 578999999998654211011 46888999988 9999999997432 110 000 0011110
Q ss_pred HHHHhhCCCCCCCCeEEEEcC---CCCcceEEEEEccCCCcceeeecCcccccCCCCCCCEEEEEeCCEEEEEEecCCCC
Q 025138 110 ILMRALSSPPFKNYQIWWSLA---DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 186 (257)
Q Consensus 110 ~~~~~L~~~~~~gY~~~~~~~---~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~d~~gr~i~v~~~~~~i~~vY~P~~~ 186 (257)
..|.....+++.++|... ..+..|+||+||.+. +..+-++. .......++.++++.+.++++|+-..+
T Consensus 82 ---w~lGt~srp~~~yiY~~~~D~~~~r~nlAIlSr~~a---dev~vLp~---~~~~~Rp~lgiri~~~~ff~tHa~a~~ 152 (262)
T 2f1n_A 82 ---WNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRA---DEVFVLSP---VRQGGRPLLGIRIGNDAFFTAHAIAMR 152 (262)
T ss_dssp ---EECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCC---SEEEEECC---SSTTCCCEEEEEETTEEEEEEECCSSS
T ss_pred ---HHhCCCCCCceEEEEEeeccCCCCceeeEEEEcccc---cceEECCC---CCCCCCceEEEEECCEEEEEEEecCCC
Confidence 011100012366544332 235779999999953 23333442 112344588899999999999987764
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCC-----CCEEEEecCCCCCCCc
Q 025138 187 WKEEENSFQRRRKWDKRIQEFVLQCSG-----KPLIWCGDLNVSHEEI 229 (257)
Q Consensus 187 ~~~~~~~~~~r~~f~~~L~~~l~~~~~-----~pvIl~GDFN~~~~~~ 229 (257)
..+ +.+..+.+.+++..... .||||+||||..+.+.
T Consensus 153 g~d-------a~a~v~~I~~~~~~~~~~~~~~~pwii~GDFNr~P~sl 193 (262)
T 2f1n_A 153 NND-------APALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADL 193 (262)
T ss_dssp SCS-------HHHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHH
T ss_pred Ccc-------HHHHHHHHHHHHhcCcccccCCCcEEEEecCCCCCcch
Confidence 321 33556777777766433 5999999999998664
No 23
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.6e-14 Score=126.45 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=91.0
Q ss_pred CCCcEEEEEeCCcchhhhh-------cCchHHHHHHhhcCCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHH
Q 025138 39 KDPLKFVTWNANSLLLRVK-------NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (257)
Q Consensus 39 ~~~lrIiTwNv~gl~~~~~-------~~~~~l~~~l~~~~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (257)
..+|||+||||+....... .+...+.++|...+||||||||+... ++ ++ +
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~------------~~-~~----------l 60 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLH------------QL-KD----------M 60 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHH------------HH-HH----------H
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHH------------HH-HH----------H
Confidence 4569999999986543211 11268999999999999999999632 11 01 1
Q ss_pred HHhhCCCCCCCCeEEEEcCCC---CcceEEEEEccCCCcce-e-eecCcccccCC----C-CCCCE-EEEEe------CC
Q 025138 112 MRALSSPPFKNYQIWWSLADS---KYAGTALLVKKCFQPKK-V-SFSLEKTALKY----E-PDGRV-ILAEF------ET 174 (257)
Q Consensus 112 ~~~L~~~~~~gY~~~~~~~~~---~~~GVAIlsr~~l~p~~-v-~~~l~~~~~~~----d-~~gr~-i~v~~------~~ 174 (257)
.+.| .+|.++...... ...++||++|..--|+. . .+.++...... + ...|. +.+.+ ..
T Consensus 61 ~~~l-----~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~ 135 (298)
T 3mpr_A 61 KEAL-----PGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFE 135 (298)
T ss_dssp HHHS-----TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCE
T ss_pred HHhC-----CCCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEEcCCCCE
Confidence 1232 577765432221 22359999543211221 1 11122100000 1 12353 34443 26
Q ss_pred EEEEEEecCCCCCCCccccHHHHHHHHHHHHHHHHcC---CCCCEEEEecCCCCCCC
Q 025138 175 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 175 ~~i~~vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~~---~~~pvIl~GDFN~~~~~ 228 (257)
+.|+|+|+++... ..|.++++.|.+.++.. ...|+|||||||+.+.+
T Consensus 136 ~~v~~~Hl~~~~~-------~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~ 185 (298)
T 3mpr_A 136 FLFFNLHMDHIGK-------KARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTH 185 (298)
T ss_dssp EEEEEEECCSSCH-------HHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTS
T ss_pred EEEEEecCCCCCH-------HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Confidence 9999999975431 34566677788887764 36799999999998865
No 24
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.54 E-value=1.1e-13 Score=121.09 Aligned_cols=166 Identities=11% Similarity=0.110 Sum_probs=92.8
Q ss_pred CCcEEEEEeCCcchhhhhcCc-hHHHHHHhh-cCCcEEEEecccCCCCC-CCCCCccccccchhhhhhHHHHHHHHHhhC
Q 025138 40 DPLKFVTWNANSLLLRVKNNW-PEFSNFITT-FDPDVIALQEVRMPAAG-SKDAPKNHQELKDDTKASREEKLILMRALS 116 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~~~~~-~~l~~~l~~-~~~DIi~LQEt~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~ 116 (257)
..+||+||||+|........| ..+..+|+. .+||||+|||+..-+.. ... +++.+.-..++. +.++
T Consensus 3 ~~~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~-----~r~~~~~g~~v~------e~~w 71 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRT-----SRVIQHGGTPIE------EYTW 71 (261)
T ss_dssp GGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEEC-----SCCCCCSSSCCE------EEEE
T ss_pred cccEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccc-----hhhhcccCCchh------hhhh
Confidence 468999999998543221112 359999999 88999999999753321 000 010000000000 0111
Q ss_pred CCC---CCCCeEEEEcC---CCCcceEEEEEccCCCcceeeecCcccccCC-CCCCCEEEEEeCCEEEEEEecCCCCCCC
Q 025138 117 SPP---FKNYQIWWSLA---DSKYAGTALLVKKCFQPKKVSFSLEKTALKY-EPDGRVILAEFETFYLLNTYAPNNGWKE 189 (257)
Q Consensus 117 ~~~---~~gY~~~~~~~---~~~~~GVAIlsr~~l~p~~v~~~l~~~~~~~-d~~gr~i~v~~~~~~i~~vY~P~~~~~~ 189 (257)
+.+ .+++.+++... ..+..|+||+||.+ ....+.++. ... .....++.++++.+.++++|+...+..+
T Consensus 72 ~lg~~~r~~~~yiy~~~~d~~~g~~g~AIlSR~~---~~~v~~l~~--~~~~~~~R~~l~i~i~g~~f~s~Hl~~~~~~e 146 (261)
T 1sr4_B 72 NLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQ---ADEAFIVHS--DSSVLQSRPAVGIRIGTDVFFTVHALATGGSD 146 (261)
T ss_dssp ESSCSSSCCEEEEEEECCCTTTSCSCEEEEESSC---CSEEEEECC--CCCSSCCCCEEEEEETTEEEEEEECCTTTTTT
T ss_pred hcccccCCCceEEEEEeecCCCCccceEEEEccc---hhceEEcCC--CCCCCcCcceEEEEECCeEEEEeCCCCCCCch
Confidence 000 02344433221 22456999999984 333333331 110 1233478888989999999998765221
Q ss_pred ccccHHHHHHHHHHHHHHHHcC---CC---CCEEEEecCCCCCCC
Q 025138 190 EENSFQRRRKWDKRIQEFVLQC---SG---KPLIWCGDLNVSHEE 228 (257)
Q Consensus 190 ~~~~~~~r~~f~~~L~~~l~~~---~~---~pvIl~GDFN~~~~~ 228 (257)
+.+....|.+++... .. .++||+||||..+..
T Consensus 147 -------a~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p~~ 184 (261)
T 1sr4_B 147 -------AVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN 184 (261)
T ss_dssp -------HHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH
T ss_pred -------HHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCChhH
Confidence 234456677776543 23 699999999988644
No 25
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.49 E-value=2e-13 Score=126.75 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=32.8
Q ss_pred CCCcEEEEEeCCcchh--------------hhhcCchHHHHHHhhcCCcEEEEecccC
Q 025138 39 KDPLKFVTWNANSLLL--------------RVKNNWPEFSNFITTFDPDVIALQEVRM 82 (257)
Q Consensus 39 ~~~lrIiTwNv~gl~~--------------~~~~~~~~l~~~l~~~~~DIi~LQEt~~ 82 (257)
...+||+||||..-.. ....+...+.++|..++||||||||+..
T Consensus 29 ~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~ 86 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVET 86 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEH
T ss_pred CCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccH
Confidence 4579999999975211 0011127899999999999999999975
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.37 E-value=1.2e-11 Score=107.05 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=79.4
Q ss_pred cEEEEEeCCcchhhhhcCchHHHHHHhhc--CCcEEEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 025138 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF--DPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (257)
Q Consensus 42 lrIiTwNv~gl~~~~~~~~~~l~~~l~~~--~~DIi~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~ 119 (257)
|||+||||+++.....+ ...+...|.+. +||||||||+..... ..+. + +.+.|....
T Consensus 1 lrv~s~NI~~~g~~~~~-~~~~~~~i~~~~~~~DIv~LQEv~~~~~---------~~~~-~----------l~~~L~~~~ 59 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMS-NATLASYIVRIVRRYDIVLIQEVRDSHL---------VAVG-K----------LLDYLNQDD 59 (260)
T ss_dssp CEEEEEEEEEESHHHHH-SHHHHHHHHHHHTTCSEEEEEEECCTTS---------HHHH-H----------HHHHHTSSS
T ss_pred CEEEEEehhhhCCCccc-hHHHHHHHHHHhccCCEEEEEEEEcCch---------hHHH-H----------HHHHHHhcc
Confidence 69999999875322111 13445555543 899999999975421 0111 1 123442111
Q ss_pred CCCCeEEEEcCCC---CcceEEEEEccCCCcceee--ecCcccc-----cCCCCCCCEEEEEe-----CCEEEEEEecCC
Q 025138 120 FKNYQIWWSLADS---KYAGTALLVKKCFQPKKVS--FSLEKTA-----LKYEPDGRVILAEF-----ETFYLLNTYAPN 184 (257)
Q Consensus 120 ~~gY~~~~~~~~~---~~~GVAIlsr~~l~p~~v~--~~l~~~~-----~~~d~~gr~i~v~~-----~~~~i~~vY~P~ 184 (257)
..+|.++...... +..++|+++|.+ ...+. +.++... ..+....++..... .++.|+++|+++
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~--~v~~~~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~ 137 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPN--KVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAP 137 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTT--TCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCG
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCc--eeEecCceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCC
Confidence 1358776543211 233689999986 22221 1122100 00112222333332 269999999975
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHc----CCCCCEEEEecCCCCCC
Q 025138 185 NGWKEEENSFQRRRKWDKRIQEFVLQ----CSGKPLIWCGDLNVSHE 227 (257)
Q Consensus 185 ~~~~~~~~~~~~r~~f~~~L~~~l~~----~~~~pvIl~GDFN~~~~ 227 (257)
... .+ ..+.|.++++. ....|+|||||||..+.
T Consensus 138 ~~~------~~----q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 138 SDA------VA----EINSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp GGH------HH----HHHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred CCc------HH----HHHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 431 11 13334333322 24579999999999776
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.05 E-value=4.1e-11 Score=118.81 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCcchhh--------------hhcCchHHHHHHhhcCCcEEEEecccC
Q 025138 40 DPLKFVTWNANSLLLR--------------VKNNWPEFSNFITTFDPDVIALQEVRM 82 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~--------------~~~~~~~l~~~l~~~~~DIi~LQEt~~ 82 (257)
..+++++||+...... ...+...+.+.|..++||||||||+..
T Consensus 393 ~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~ 449 (727)
T 4b8c_D 393 RTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVES 449 (727)
T ss_dssp ---------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCH
T ss_pred cceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCH
Confidence 4689999999851100 011126799999999999999999964
No 28
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=98.84 E-value=3e-08 Score=90.32 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=84.2
Q ss_pred CCcEEEEEeCCcchhhhhcCchHHHHHHhh---cCCcE--EEEecccC-CCCCCCCCCccccccchhhhhhHHHHH-HHH
Q 025138 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITT---FDPDV--IALQEVRM-PAAGSKDAPKNHQELKDDTKASREEKL-ILM 112 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~---~~~DI--i~LQEt~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 112 (257)
-.+.|+||||+|... . ..+..||.. ..||| |||||+.. ....+-. .|. .....|. .+.
T Consensus 25 ~~i~v~TwNv~g~~~--~---~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~---------~~~-~~~~~w~~~i~ 89 (347)
T 1i9z_A 25 VKIFVASYNLNGCSA--T---TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS---------ADP-AKRREWESCVK 89 (347)
T ss_dssp EEEEEEEEECTTCCC--C---SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----C---------CCH-HHHHHHHHHHH
T ss_pred cEEEEEeEecCCCCC--c---hhHHHHhccccCCCCCEEEEEeEEeecCchhhhcc---------cCc-hhHHHHHHHHH
Confidence 358899999998764 1 348888874 67999 89999842 3221100 000 0000111 111
Q ss_pred HhhCCC--CCCCCeEEEEcCCCCcceEEEEEccCCCcc--eee-----ecCcccccCCCCCCCEEEEE--eC--CEEEEE
Q 025138 113 RALSSP--PFKNYQIWWSLADSKYAGTALLVKKCFQPK--KVS-----FSLEKTALKYEPDGRVILAE--FE--TFYLLN 179 (257)
Q Consensus 113 ~~L~~~--~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~--~v~-----~~l~~~~~~~d~~gr~i~v~--~~--~~~i~~ 179 (257)
..|... ...+|..+.+. .-+.-+++||+|.++.+. .+. +++.+ .......+.+. +. .+.++|
T Consensus 90 ~~L~~~~~~~~~Y~~v~s~-~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g----~~gnKGav~vr~~~~~~~l~fvn 164 (347)
T 1i9z_A 90 RLLNGKCTSGPGYVQLRSG-QLVGTALMIFCKESCLPSIKNVEGTVKKTGLGG----VSGNKGAVAIRFDYEDTGLCFIT 164 (347)
T ss_dssp HHHHHTCCSSCCEEEEEEE-EETTEEEEEEEEGGGGGGEEEEEEEEEECCCC--------CCEEEEEEEEETTEEEEEEE
T ss_pred HHHhhcccCCCceeEEEEe-eccceEEEEEEehHhhhhccceeeeeEeccCCC----ccCCCceEEEEEEECCeEEEEEE
Confidence 223100 01345544332 122347888999976432 111 33322 11112234444 43 699999
Q ss_pred EecCCCCCCCccccHHHHHHHHHHHHHHHHc------CCCCCEEEEecCCCCC
Q 025138 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------CSGKPLIWCGDLNVSH 226 (257)
Q Consensus 180 vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~------~~~~pvIl~GDFN~~~ 226 (257)
+|+.++.. ..++|.+.+..+.+.+.- ....++|++||||...
T Consensus 165 ~HLaa~~~-----~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi 212 (347)
T 1i9z_A 165 SHLAAGYT-----NYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRI 212 (347)
T ss_dssp EECCCCSS-----CHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCB
T ss_pred ecCCCCCc-----cHHHHHHHHHHHHHhhccCcccccccCccEEEeccccccc
Confidence 99988764 233455555555444320 1346899999999544
No 29
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=98.80 E-value=2.4e-09 Score=94.63 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=76.2
Q ss_pred CCcEEEEEeCCcchhhhhcCchHHHHHHh---hcCCcE--EEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 025138 40 DPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDV--IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (257)
Q Consensus 40 ~~lrIiTwNv~gl~~~~~~~~~~l~~~l~---~~~~DI--i~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (257)
-.++|+||||++.... +.+..|+. ..+||| |||||+........ ....+.++ +.+.
T Consensus 7 ~~i~V~T~Nv~~~~~~-----~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~~----~~~~w~~~----------l~~~ 67 (282)
T 2imq_X 7 LSVHTVSWNSGHERAP-----TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQ----QGPACVKN----------FQSL 67 (282)
T ss_dssp EEEEEEEEEEETCCCC-----SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTC----CHHHHHHH----------HHHH
T ss_pred cEEEEEEEeCCCCcCc-----hhHHHHhcccccCCCCEEEEEeeeeccccccch----hhHHHHHH----------HHHh
Confidence 4689999999875432 23455554 688996 59999975432100 00011111 1123
Q ss_pred hCCCCCCCCeEEEEcCCCCcce--EEEEEccCCCcc-e-e-eecCcccccCCCCCCCEEEEEe--C--CEEEEEEecCCC
Q 025138 115 LSSPPFKNYQIWWSLADSKYAG--TALLVKKCFQPK-K-V-SFSLEKTALKYEPDGRVILAEF--E--TFYLLNTYAPNN 185 (257)
Q Consensus 115 L~~~~~~gY~~~~~~~~~~~~G--VAIlsr~~l~p~-~-v-~~~l~~~~~~~d~~gr~i~v~~--~--~~~i~~vY~P~~ 185 (257)
|. . .+|..+... ..+..| ++|++|+++.+. . + ..++.+ ..... ..+.+++ . .+.++|+|+.++
T Consensus 68 L~--~-~~Y~~v~~~-~~~~~G~~l~vf~k~~~~~~i~~~~~~~~~g---~~g~k-Gav~~r~~~~~~~~~fvn~HL~~~ 139 (282)
T 2imq_X 68 LT--S-KGYTKLKNT-ITETMGLTVYCLEKHLDQNTLKNETIIVTVD---DQKKS-GGIVTSFTIYNKRFSFTTSRMSDE 139 (282)
T ss_dssp HH--H-TTEEEEEEE-ECSSEEEEEEEEGGGCCTTTCCCEEEEEECS---TTSCS-EEEEEEEEETTEEEEEEEEECCTT
T ss_pred cC--C-CceEEEEec-cCceeEEEEEEEEccccCccceeeeeccccc---cccCC-ceEEEEEEECCEEEEEEEECCCCC
Confidence 31 1 356554331 123345 444557654221 1 1 112211 01111 1344444 3 689999999887
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHc-CCCCCEEEEecCCCCCC
Q 025138 186 GWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHE 227 (257)
Q Consensus 186 ~~~~~~~~~~~r~~f~~~L~~~l~~-~~~~pvIl~GDFN~~~~ 227 (257)
...... |.+.++.+.+.+.. ....++|+|||||...+
T Consensus 140 ~~~~~~-----R~~~~~~I~~~~~~~~~~~~vi~~GDfN~r~~ 177 (282)
T 2imq_X 140 DVTSTN-----TKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVE 177 (282)
T ss_dssp CCCTTS-----SSSSCCGGGCTTSSSSCCSEEEEEEECSCCBC
T ss_pred CchHHH-----HHHHHHHHHHhhhccCccceEEEecccccccC
Confidence 432111 11122233333322 13468999999997654
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.77 E-value=2.6e-08 Score=91.01 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=83.9
Q ss_pred CCCcEEEEEeCCcchhhhhcCchHHHHHHh----hcCCcE--EEEecccCCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 025138 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFIT----TFDPDV--IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112 (257)
Q Consensus 39 ~~~lrIiTwNv~gl~~~~~~~~~~l~~~l~----~~~~DI--i~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (257)
.-.++|+||||+|..... ..+.+|+. ...||| |+|||+.... ..+.+ .+.
T Consensus 25 ~l~i~v~TwNv~g~~~~~----~~L~~~l~~~~~~~~pDI~viGlQEi~~~~----------~~W~~----------~l~ 80 (357)
T 2xsw_A 25 NVALFVATWNMQGQKELP----PSLDEFLLPAEADYAQDLYVIGVQEGCSDR----------REWET----------RLQ 80 (357)
T ss_dssp EEEEEEEEEECTTCSSCC----SCCHHHHSCTTCCSCCSEEEEEEESCCSCH----------HHHHH----------HHH
T ss_pred CceEEEEEEecCCCCCCc----ccHHHHhccccccCCCCEEEEEeeeccchH----------HHHHH----------HHH
Confidence 345889999999864322 23556654 357996 8899996321 11111 112
Q ss_pred HhhCCCCCCCCeEEEEcCCCCcceEEEEEccCCCcc----e---eeecCcccccCCCCCCCEEEE--EeC--CEEEEEEe
Q 025138 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK----K---VSFSLEKTALKYEPDGRVILA--EFE--TFYLLNTY 181 (257)
Q Consensus 113 ~~L~~~~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~----~---v~~~l~~~~~~~d~~gr~i~v--~~~--~~~i~~vY 181 (257)
+.|. .+|..+.+ ..-+.-+++||+|.++.+. . +..++.+ .-.....+.+ .+. .+.++|+|
T Consensus 81 ~~L~----~~Y~~v~s-~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g----~~gNKGav~vr~~~~~t~~~Fvn~H 151 (357)
T 2xsw_A 81 ETLG----PHYVLLSS-AAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVS----QIKTKGALGISFTFFGTSFLFITSH 151 (357)
T ss_dssp HHHC----TTEEEEEE-EEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEE----TTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHhC----Ccccchhh-hhhhhEEEEEEEchHHhhcCceeEeccccccccc----ccccccEEEEEEEECCeEEEEEEEc
Confidence 3442 45655433 2223457899999975331 1 1122211 0001123333 443 68899999
Q ss_pred cCCCCCCCccccHHHHHHHHHHHHHHHHc------------------CCCCCEEEEecCCCCCCC
Q 025138 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQ------------------CSGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 182 ~P~~~~~~~~~~~~~r~~f~~~L~~~l~~------------------~~~~pvIl~GDFN~~~~~ 228 (257)
+.++.. +.++|.+-+..+.+.+.- .....+|++||||.....
T Consensus 152 Laa~~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 152 FTSGDG-----KVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp CCCSTT-----CHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred cCCCCc-----hHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCccccc
Confidence 988764 234455555555444320 013689999999986653
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.59 E-value=8.2e-07 Score=79.55 Aligned_cols=162 Identities=19% Similarity=0.184 Sum_probs=84.8
Q ss_pred CcEEEEEeCCcchhhhhcCchHHHHHHhh--cCCc--EEEEecccCCCCCCC-CCCccccccchhhhhhHHHHH-HHHHh
Q 025138 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT--FDPD--VIALQEVRMPAAGSK-DAPKNHQELKDDTKASREEKL-ILMRA 114 (257)
Q Consensus 41 ~lrIiTwNv~gl~~~~~~~~~~l~~~l~~--~~~D--Ii~LQEt~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~-~~~~~ 114 (257)
.+.|+||||+|.... +.+.+||.. ..|| ||+|||+......+- .. ....+ .|. .+...
T Consensus 9 ~i~v~TwNvng~~~~-----~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~----~~~~~-------~W~~~i~~~ 72 (313)
T 3mtc_A 9 RFFAGTYNVNGQSPK-----ECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHD----TPKEE-------EWFKAVSEG 72 (313)
T ss_dssp EEEEEEEECTTCCCC-----SCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCC----CHHHH-------HHHHHHHHH
T ss_pred EEEEEEEEcCCccCc-----hhHHHHhcccCCCCCeEEEEEEecccchhhhcccC----cchHH-------HHHHHHHHh
Confidence 467889999997542 358888886 6799 799999964321100 00 00011 222 12244
Q ss_pred hCCCCCCCCeEEEEcCCCCcceEEEEEccCCCcc-------eeeecCcccccCCCCCCCEEEEEeC--CEEEEEEecCCC
Q 025138 115 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK-------KVSFSLEKTALKYEPDGRVILAEFE--TFYLLNTYAPNN 185 (257)
Q Consensus 115 L~~~~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~-------~v~~~l~~~~~~~d~~gr~i~v~~~--~~~i~~vY~P~~ 185 (257)
|. +..+|..+.+..-.| --+.|++|..+.+. .+.+++.+ ...+..+-.+...+. .+.++|.|+.++
T Consensus 73 L~--~~~~Y~~v~s~~lvG-l~l~Vfvr~~~~~~i~~v~~~~v~tG~~g--~~GNKGaV~ir~~~~~ts~cFVnsHLaA~ 147 (313)
T 3mtc_A 73 LH--PDAKYAKVKLIRLVG-IMLLLYVKQEHAAYISEVEAETVGTGIMG--RMGNKGGVAIRFQFHNTSICVVNSHLAAH 147 (313)
T ss_dssp SC--TTSCEEEEEEEEETT-EEEEEEEEGGGGGGEEEEEEEEEECSGGG--TSTTSEEEEEEEEETTEEEEEEEEECCCS
T ss_pred cC--CCCCEEEEEEechhh-hhhhhhhhhhhhhhcceeEeeeecccccc--cccCCceEEEEEEECCcEEEEEeeccCCC
Confidence 52 113566554321111 23557778865332 12233322 011111123344443 688999999887
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHc------------CCCCCEEEEecCCCCCCC
Q 025138 186 GWKEEENSFQRRRKWDKRIQEFVLQ------------CSGKPLIWCGDLNVSHEE 228 (257)
Q Consensus 186 ~~~~~~~~~~~r~~f~~~L~~~l~~------------~~~~pvIl~GDFN~~~~~ 228 (257)
.. +.++|.+-+..+.+.+.- .....++++||||.....
T Consensus 148 ~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~ 197 (313)
T 3mtc_A 148 IE-----EYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEE 197 (313)
T ss_dssp GG-----GHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCS
T ss_pred ch-----HHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccC
Confidence 53 344554444444443321 012359999999987653
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.26 E-value=5.6e-06 Score=74.23 Aligned_cols=153 Identities=19% Similarity=0.155 Sum_probs=78.3
Q ss_pred CcEEEEEeCCcchhhhhcCchHHHHHHhh-------------cCCcEE--EEecccCCCCCCCCCCccccccchhhhhhH
Q 025138 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT-------------FDPDVI--ALQEVRMPAAGSKDAPKNHQELKDDTKASR 105 (257)
Q Consensus 41 ~lrIiTwNv~gl~~~~~~~~~~l~~~l~~-------------~~~DIi--~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (257)
.+-|.||||+|.... ..|..||.. ..|||+ ++||..... ..+.+. +
T Consensus 9 ~i~vgTwNv~g~~p~-----~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~----------~~W~~~----i 69 (316)
T 4a9c_A 9 SVFIGTWNMGSVPPP-----KNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGD----------REWLDL----L 69 (316)
T ss_dssp EEEEEEEECTTSCCC-----SCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCH----------HHHHHH----H
T ss_pred EEEEEEeEcCCcCCC-----cchhHhhcccccccCcccccccCCCcEEEEeccccccch----------hHHHHH----H
Confidence 467889999985422 347777752 347887 899974221 111111 1
Q ss_pred HHHHHHHHhhCCCCCCCCeEEEEcCCCCcceEEEEEccCCCcc--e-----eeecCcccccCCCCCCCEEEEEeC--CEE
Q 025138 106 EEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK--K-----VSFSLEKTALKYEPDGRVILAEFE--TFY 176 (257)
Q Consensus 106 ~~~~~~~~~L~~~~~~gY~~~~~~~~~~~~GVAIlsr~~l~p~--~-----v~~~l~~~~~~~d~~gr~i~v~~~--~~~ 176 (257)
.+.|.......|..+... .-+.-+++|++|.++.+. . +.+++.+ ...+..+-.+.+.+. .+.
T Consensus 70 ------~~~L~~~~~~~Y~~v~s~-~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g--~~GNKGaV~ir~~~~~ts~~ 140 (316)
T 4a9c_A 70 ------RGGLKELTDLDYRPIAMQ-SLWNIKVAVLVKPEHENRISHVSTSSVKTGIAN--TLGNKGAVGVSFMFNGTSFG 140 (316)
T ss_dssp ------HHHHHHHHSCCCEEEEEE-EETTEEEEEEECGGGGGGEEEEEEEEEEEC--------CEEEEEEEEEETTEEEE
T ss_pred ------HHHhccccCCCEEEEEee-eehheeeeeEEeHHHhhhCcccccceeeeeeeE--ecCCCceEEEEEEECCcEEE
Confidence 122210001357655432 112346888899875332 1 2233322 001111112334443 689
Q ss_pred EEEEecCCCCCCCccccHHHHHHHHHHHHHHHHc----C-------CCCCEEEEecCCCCC
Q 025138 177 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----C-------SGKPLIWCGDLNVSH 226 (257)
Q Consensus 177 i~~vY~P~~~~~~~~~~~~~r~~f~~~L~~~l~~----~-------~~~pvIl~GDFN~~~ 226 (257)
++|.|+.++.. +.++|.+-+..+.+.+.- . ....++++||||...
T Consensus 141 FVn~HLaAg~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi 196 (316)
T 4a9c_A 141 FVNCHLTSGNE-----KTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRL 196 (316)
T ss_dssp EEEEECCCSTT-----CHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCB
T ss_pred EEEeccccCch-----HHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCc
Confidence 99999988764 344554444444433210 0 113589999999765
No 33
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=48.97 E-value=13 Score=31.67 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=27.6
Q ss_pred CCCCCCCcEEEEEeCCcchhhhhcCchHHHHHHhh---cCCcEEEEecccCCC
Q 025138 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITT---FDPDVIALQEVRMPA 84 (257)
Q Consensus 35 ~~~~~~~lrIiTwNv~gl~~~~~~~~~~l~~~l~~---~~~DIi~LQEt~~~~ 84 (257)
..+....|||+..-++-.......+.+.+..++++ .++|+|+++|+....
T Consensus 14 ~~~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~g 66 (281)
T 3p8k_A 14 LVPRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNG 66 (281)
T ss_dssp CCCTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTT
T ss_pred ccccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCC
Confidence 34445567777654432111111011345555554 589999999997753
No 34
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=36.93 E-value=21 Score=30.28 Aligned_cols=44 Identities=7% Similarity=-0.001 Sum_probs=24.7
Q ss_pred CCCCcEEEE--EeCCcchhhhhcCchHHHHHHh---hcCCcEEEEecccCC
Q 025138 38 KKDPLKFVT--WNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQEVRMP 83 (257)
Q Consensus 38 ~~~~lrIiT--wNv~gl~~~~~~~~~~l~~~l~---~~~~DIi~LQEt~~~ 83 (257)
....|||+. .|+.-...... .+.+..+++ +.++|+|+++|+...
T Consensus 17 ~~~~~rva~~Q~~~~~~d~~~N--~~~~~~~i~~A~~~gadlvvfPE~~l~ 65 (283)
T 3hkx_A 17 RGSHMRIALMQHTARPLDPQHN--LDLIDDAAARASEQGAQLLLTPELFGF 65 (283)
T ss_dssp TTEEEEEEEEEBCCCTTCHHHH--HHHHHHHHHHHHHTTCSEEECCTTGGG
T ss_pred cCCccEEEEEeCCCCCCCHHHH--HHHHHHHHHHHHHCCCCEEEcCCCccc
Confidence 344567665 45432111111 134555554 358999999999875
No 35
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=26.10 E-value=56 Score=27.02 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=17.1
Q ss_pred hHHHHHHhh--cCCcEEEEecccCCC
Q 025138 61 PEFSNFITT--FDPDVIALQEVRMPA 84 (257)
Q Consensus 61 ~~l~~~l~~--~~~DIi~LQEt~~~~ 84 (257)
+.+..++++ .++|+|+++|+....
T Consensus 23 ~~~~~~i~~a~~gadlvv~PE~~~~g 48 (266)
T 2e11_A 23 DYYGALLEPLAGQSDLVILPETFTSG 48 (266)
T ss_dssp HHHHHHHGGGTTTCSEEECCTTTTTC
T ss_pred HHHHHHHHHhcCCCCEEECCCCcccc
Confidence 345555553 579999999997753
No 36
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=23.35 E-value=44 Score=28.12 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=12.4
Q ss_pred hcCCcEEEEecccCC
Q 025138 69 TFDPDVIALQEVRMP 83 (257)
Q Consensus 69 ~~~~DIi~LQEt~~~ 83 (257)
..++|+|+++|+...
T Consensus 43 ~~gadlvv~PE~~~~ 57 (291)
T 1f89_A 43 QPDTKLVVLPECFNS 57 (291)
T ss_dssp CTTEEEEECCTTTTS
T ss_pred cCCCeEEEcCCCccc
Confidence 457999999999873
No 37
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=22.29 E-value=60 Score=26.85 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=17.3
Q ss_pred hHHHHHH---hhcCCcEEEEecccCCC
Q 025138 61 PEFSNFI---TTFDPDVIALQEVRMPA 84 (257)
Q Consensus 61 ~~l~~~l---~~~~~DIi~LQEt~~~~ 84 (257)
+.+.+++ ...++|+|+++|+....
T Consensus 21 ~~~~~~i~~A~~~gadlvvfPE~~~~g 47 (262)
T 3ivz_A 21 SKAEKLIKEASKQGAQLVVLPELFDTG 47 (262)
T ss_dssp HHHHHHHHHHHHTTCSEEECCTTTTTC
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCcccC
Confidence 3455555 35689999999998753
No 38
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=20.93 E-value=55 Score=27.57 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=16.0
Q ss_pred HHHHHHh---hcCCcEEEEecccCC
Q 025138 62 EFSNFIT---TFDPDVIALQEVRMP 83 (257)
Q Consensus 62 ~l~~~l~---~~~~DIi~LQEt~~~ 83 (257)
.+..+++ ..++|+|+++|+...
T Consensus 26 ~~~~~i~~a~~~gadlvv~PE~~~~ 50 (303)
T 1uf5_A 26 RLLDMLTKAASRGANFIVFPELALT 50 (303)
T ss_dssp HHHHHHHHHHHTTCSEEECCTTTTS
T ss_pred HHHHHHHHHHhcCCCEEEecccccc
Confidence 4555554 458999999999765
No 39
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=20.25 E-value=64 Score=30.47 Aligned_cols=46 Identities=7% Similarity=-0.014 Sum_probs=23.9
Q ss_pred CCCCcEEEEEeCCcchhhhhcCchHHHHHHh---hcCCcEEEEecccCC
Q 025138 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQEVRMP 83 (257)
Q Consensus 38 ~~~~lrIiTwNv~gl~~~~~~~~~~l~~~l~---~~~~DIi~LQEt~~~ 83 (257)
.++.|||+.-=++...+....+.+.+.++++ +.++|+|+++|....
T Consensus 3 ~sMkmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~lt 51 (565)
T 4f4h_A 3 GSMKTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALS 51 (565)
T ss_dssp ---CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTT
T ss_pred CCcceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCccc
Confidence 4566888754443221111101134455544 578999999998765
Done!