BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025140
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 170/237 (71%)
Query: 18 SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI 77
SP EV C T AML+DP +A+ V K G + GKGY+D+STVD +TS IN I
Sbjct: 70 SPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAI 129
Query: 78 KATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA 137
G F+E PVSGSKKPAEDGQLI LAAGDK+L+ P D++GK FYLG VGNGA
Sbjct: 130 TGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAK 189
Query: 138 MKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYP 197
MKL+VNMIMGSMM FSEGL+ ++K GL + L++++ GA++ PM+ KGPSM +S YP
Sbjct: 190 MKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYP 249
Query: 198 TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 254
AFPLKHQQKD+RLAL L + + S P+AAAANE +K A+S GL D DFSAVIEA+K
Sbjct: 250 PAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/234 (55%), Positives = 165/234 (70%)
Query: 18 SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI 77
+P EV SC VTFAMLADP +A +V GKHG G+G G+GYVD+STVD TS+ I +
Sbjct: 50 TPXEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAV 109
Query: 78 KATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA 137
A G FLEAPVSGSKKPAEDG LI LAAGD++LY+ P + MGK +LGDVG GA
Sbjct: 110 VAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAE 169
Query: 138 MKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYP 197
MKLVVNM+MG MMA F EGL EK GL + +++V+ GA++ PM++LKG + + +
Sbjct: 170 MKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFA 229
Query: 198 TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 251
AFPLKH QKDLRLA+ L + V Q +AAANEL+K A++ G DEDFSA+ +
Sbjct: 230 PAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFK 283
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 249 bits (635), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/242 (51%), Positives = 161/242 (66%)
Query: 14 RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI 73
R SP EV A+CD+T AMLADP +A +V G +G G+G G+GY+D+STVD +TS I
Sbjct: 46 RQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAI 105
Query: 74 NGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVG 133
+ A G FLEAPVSG+KKPAEDG LI LAAGD+SL+ P +GK +LG+VG
Sbjct: 106 GAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVG 165
Query: 134 NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIE 193
GA MKLVVNMIMG MM EG+ GLD L+EV+ GA++ PM+ KG ++
Sbjct: 166 QGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLS 225
Query: 194 SLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 253
+PT+FPLKH QKDLRLA+ L + + Q AA ANE +K A++ G +DEDF+AV L
Sbjct: 226 GEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVL 285
Query: 254 KA 255
+A
Sbjct: 286 EA 287
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 157/245 (64%)
Query: 8 FYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG 67
F R +P EV ++CD+TFA ++DP++A D+ G G G+ PGK YVD+STVD
Sbjct: 69 FIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDA 128
Query: 68 DTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 127
DT + I + G FLEAPVSG+++ + DG L+ LAAGD+ LY + MGK+ F
Sbjct: 129 DTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSF 188
Query: 128 YLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLK 187
+LG+VGN A M L+VNM+ GS MAT +EGL ++ G L+++++QG +++ K
Sbjct: 189 FLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQK 248
Query: 188 GPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFS 247
++++ + F LK+ QKDLRLA+ L ++V+ TP+AAAANE+YK AK+ SD D S
Sbjct: 249 CQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMS 308
Query: 248 AVIEA 252
AV A
Sbjct: 309 AVYRA 313
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%)
Query: 21 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT 80
+V D+ F + D DV G+HG A GK VD S++ +K +
Sbjct: 54 QVTEFADIIFIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEX 113
Query: 81 GASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKL 140
GA +L+APVSG + A +G L G++ +++ V PL DI+GK+ +G G+G K+
Sbjct: 114 GADYLDAPVSGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKV 173
Query: 141 VVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF 200
+I+ + SE L+ + K G DP + + + G S+ + + G I + F
Sbjct: 174 ANQIIVALNIEAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXINRTFEPGF 233
Query: 201 PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 254
+ QKDL LAL A++++ + P A EL+ ++G S D SA ++AL+
Sbjct: 234 KIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAXVQALE 287
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 5/238 (2%)
Query: 20 DEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA 79
+VAA+ D+ F L + V G G S G VD+S+V ++ +
Sbjct: 55 QKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAE 114
Query: 80 TGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMK 139
G +++APVSG K AE G L + ++++ + P+L ++GK +++GD G G A+K
Sbjct: 115 KGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVK 174
Query: 140 LVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS---MIESLY 196
+V N+++G MA+ +E L+ K GL P + E++ G S Y+++ ++ +
Sbjct: 175 IVNNLLLGCNMASLAEALVLGVKCGLKPETMQEII--GKSSGRSYAMEAKMEKFIMSGDF 232
Query: 197 PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 254
F + Q KDL LAL + + P+ A A ++++ ++ GL ED SAVI+ +
Sbjct: 233 AGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWE 290
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 110/228 (48%)
Query: 22 VAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 81
+A CDV L + +VA G++G G PG +D S++ S+ I+ +KA G
Sbjct: 58 IAEQCDVIITXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKG 117
Query: 82 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV 141
L+APVSG + A DG L GDK++++ L S + GD+G G KL
Sbjct: 118 VEXLDAPVSGGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLA 177
Query: 142 VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFP 201
+I+ +A SE L + K G++P+++ + + G + + K P + + + F
Sbjct: 178 NQVIVALNIAAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPGFR 237
Query: 202 LKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 249
+ KDL AL + V P+ AA E + ++ G ++D SA+
Sbjct: 238 IDLHIKDLANALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSAL 285
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 9/248 (3%)
Query: 18 SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI 77
SP +VA D ML +A++ G +G + G +D ST+D SK + +
Sbjct: 71 SPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEV 130
Query: 78 KATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA 137
+ GA F++APVSG A G L F+ G + + LL MG + Y G VG G A
Sbjct: 131 EKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQA 190
Query: 138 MKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA---ISAPMYSLKGPSMIES 194
K+ NM++ M +E + ++GLDP +L ++++ + S+ Y+ P +++
Sbjct: 191 AKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYN-PVPGVMDG 249
Query: 195 L-----YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 249
+ Y F KDL LA A S + + A+++Y++ + G S +DFS+V
Sbjct: 250 VPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSV 309
Query: 250 IEALKAKK 257
+ L+ ++
Sbjct: 310 FQFLREEE 317
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 9/248 (3%)
Query: 18 SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI 77
SP +VA D ML +A++ G +G + G +D ST+D SK + +
Sbjct: 49 SPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEV 108
Query: 78 KATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA 137
+ GA F++APVSG A G L F+ G + + LL MG + Y G VG G A
Sbjct: 109 EKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQA 168
Query: 138 MKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA---ISAPMYSLKGPSMIES 194
K+ NM++ M +E + ++GLDP +L ++++ + S+ Y+ P +++
Sbjct: 169 AKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYN-PVPGVMDG 227
Query: 195 L-----YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 249
+ Y F KDL LA A S + + A+++Y++ + G S +DFS+V
Sbjct: 228 VPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSV 287
Query: 250 IEALKAKK 257
+ L+ ++
Sbjct: 288 FQFLREEE 295
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 1/211 (0%)
Query: 47 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA 106
G A+ PG ++D +++ ++ + A G + L+ PVSG AE G L+ A
Sbjct: 108 QGVAAAXKPGSLFLDXASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIXAG 167
Query: 107 GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD 166
G + + PLL + G++ ++G G+G KL I+G + +E LL + K G D
Sbjct: 168 GKPADFERSLPLLKVFGRAT-HVGPHGSGQLTKLANQXIVGITIGAVAEALLFATKGGAD 226
Query: 167 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIA 226
+ E ++ G + + L G +E + L Q KD R AL A+ + PI
Sbjct: 227 XAKVKEAITGGFADSRVLQLHGQRXVERDFAPRARLSIQLKDXRNALATAQEIGFDAPIT 286
Query: 227 AAANELYKVAKSHGLSDEDFSAVIEALKAKK 257
+LY HGL+D D S + L ++
Sbjct: 287 GLFEQLYAEGVEHGLTDLDQSGLFVELASRN 317
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 8/237 (3%)
Query: 19 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 78
P E A V F L +VA + + G +VD ++ + + S+ + ++
Sbjct: 49 PLERVAEARVIFTCLPTTREVYEVAEALY---PYLREGTYWVDATSGEPEASRRLAERLR 105
Query: 79 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 138
G ++L+APVSG AE G L + G + V P L K ++G VG G A+
Sbjct: 106 EKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVHVGPVGAGHAV 164
Query: 139 KLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV-SQGAISAPMYSLKGPSMIESLYP 197
K + N ++ + EGLL K G+ +EV+ + S +L ++ +P
Sbjct: 165 KAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFP 224
Query: 198 TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 254
F L KDL +A+G+ + +P+ A E+Y++AK D D +EAL+
Sbjct: 225 KTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADH---VEALR 278
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 8/237 (3%)
Query: 19 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 78
P E A V F L +VA + + G +VD ++ + + S+ + ++
Sbjct: 49 PLERVAEARVIFTCLPTTREVYEVAEALY---PYLREGTYWVDATSGEPEASRRLAERLR 105
Query: 79 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 138
G ++L+APVSG AE G L G + V P L K ++G VG G A+
Sbjct: 106 EKGVTYLDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAV 164
Query: 139 KLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV-SQGAISAPMYSLKGPSMIESLYP 197
K + N ++ + EGLL K G+ +EV+ + S +L ++ +P
Sbjct: 165 KAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFP 224
Query: 198 TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 254
F L KDL +A G+ + +P+ A E+Y+ AK D D +EAL+
Sbjct: 225 KTFALGLLVKDLGIAXGVLDGEKAPSPLLRLAREVYEXAKRELGPDADH---VEALR 278
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 1/240 (0%)
Query: 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL 72
C S E A D ++ + V G+ G A PG ST+ ++
Sbjct: 52 CGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLXKPGSAVXVSSTISSADAQE 111
Query: 73 INGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV 132
I + A + L+APVSG A G+ A+G ++ + + P+LD + + + + D
Sbjct: 112 IAAALTALNLNXLDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKPVLDAVASNVYRISDT 171
Query: 133 -GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSM 191
G G+ +K++ ++ G +A +E + + G+ +V +VV+ A ++ + + +
Sbjct: 172 PGAGSTVKIIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXFENRXQHV 231
Query: 192 IESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 251
++ Y + KDL L A+++ P+A+ A + A + G ED SAVI+
Sbjct: 232 VDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNXFTSASNAGYGKEDDSAVIK 291
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 8/185 (4%)
Query: 55 PGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNT 114
PG ST+ T+ + +KA ++APVSG A G+L + D+ +Y
Sbjct: 97 PGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYER 156
Query: 115 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV 174
+ P + G+ G G MKL NM+ + A E + +E GLD L VV
Sbjct: 157 IKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVV 216
Query: 175 SQ-GAISAPMYSLKGPSMIESLYPTAF---PLKHQ----QKDLRLALGLAESVSQSTPIA 226
A++ ++ ++ L P F P H +KDL LAL L E+VS P+A
Sbjct: 217 RHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLA 276
Query: 227 AAANE 231
A E
Sbjct: 277 RLAYE 281
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 9/232 (3%)
Query: 26 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85
DV + L + + G + + PG ++ ST+ +++ I+ + G + L
Sbjct: 59 ADVVISXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXL 118
Query: 86 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI 145
+APVSG A G L F GD PL + G++ F+ G G G K+ N +
Sbjct: 119 DAPVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQL 178
Query: 146 MGSMMATFSEGLLHSEKVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESL-----YP 197
+ + +E GL+ VL E+ S G + +Y+ P + E+ Y
Sbjct: 179 LAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYN-PWPGVXENAPASRDYS 237
Query: 198 TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 249
F + KDL LA A++ + STP + A LY++ G ++ DFS V
Sbjct: 238 GGFXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 289
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 9/232 (3%)
Query: 26 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85
DV + L + + G + + PG ++ ST+ +++ I+ + G + L
Sbjct: 60 ADVVISXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXL 119
Query: 86 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI 145
+APVSG A G L F GD PL + G++ F+ G G G K+ N +
Sbjct: 120 DAPVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQL 179
Query: 146 MGSMMATFSEGLLHSEKVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESL-----YP 197
+ + +E GL+ VL E+ S G + +Y+ P + E+ Y
Sbjct: 180 LAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYN-PWPGVXENAPASRDYS 238
Query: 198 TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 249
F + KDL LA A++ + STP + A LY++ G ++ DFS V
Sbjct: 239 GGFXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 290
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 4/224 (1%)
Query: 28 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87
+ F++LAD + ++ + +G +V ST+ +TS+ + + GA ++ A
Sbjct: 64 IVFSVLADDAAVEELFSXE--LVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGA 121
Query: 88 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIM 146
P+ + +G+ + P+++ K F GD G +KL N +
Sbjct: 122 PIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFXI 181
Query: 147 GSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLY-PTAFPLKHQ 205
+ E +EK G+ + E ++ +AP++ G + + Y P AF
Sbjct: 182 ACSLEXXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLG 241
Query: 206 QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 249
KD+ L L A V+ P A + + G + D+ A+
Sbjct: 242 LKDINLTLQTASDVNAPXPFADIIRNRFISGLAKGRENLDWGAL 285
>pdb|4EZB|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
From Sinorhizobium Meliloti 1021
Length = 317
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 59 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL 118
++D+++V DT L G I SF+E V P + ++ L AG +++ VA
Sbjct: 117 FIDLNSVGPDTKALAAGAIATGKGSFVEGAVXARVPPYAE-KVPILVAGRRAV--EVAER 173
Query: 119 LDIMGKSRFYLGDV-GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL 170
L+ +G + +G+ G +++K + ++ + + A E L +E+ G+ +L
Sbjct: 174 LNALGXNLEAVGETPGQASSLKXIRSVXIKGVEALLIEALSSAERAGVTERIL 226
>pdb|3RKO|L Chain L, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|B Chain B, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 613
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 20/126 (15%)
Query: 127 FYLGDVGNGAA-MKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYS 185
FY D NGAA MK V +G + F+ +L++E L+ +VE+ AP +
Sbjct: 156 FYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVEL-------APAHF 208
Query: 186 LKGPSMIESLYPTAFPL---KHQQKDLRLALGLAESVSQSTPIAAAANE-------LYKV 235
G +M+ ++ T L + L L LA++++ TP++A + +Y +
Sbjct: 209 ADGNNML--MWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLI 266
Query: 236 AKSHGL 241
A++HGL
Sbjct: 267 ARTHGL 272
>pdb|1XN4|A Chain A, Putative Mar1 Ribonuclease From Leishmania Major
Length = 192
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 98 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNG--------AAMKLVVNMIMGSM 149
D ++F G + TVA LLD+ R +L G G AAMKL+ +
Sbjct: 100 DNAVVFGIEGHACILQTVADLLDM--NKRVFLPKDGLGSQKKTDFKAAMKLMGSWSPNCE 157
Query: 150 MATFSEGLLHSEKVGLDPN 168
+ T LL K +DPN
Sbjct: 158 ITTSESILLQMTKDAMDPN 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,395,338
Number of Sequences: 62578
Number of extensions: 292482
Number of successful extensions: 646
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 25
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)