Query 025140
Match_columns 257
No_of_seqs 168 out of 1174
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:01:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 8.8E-64 1.9E-68 429.5 28.3 250 5-254 37-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 8E-61 1.7E-65 404.6 26.8 255 3-257 69-324 (327)
3 PRK15059 tartronate semialdehy 100.0 7.4E-56 1.6E-60 387.5 30.8 251 6-256 36-286 (292)
4 PRK15461 NADH-dependent gamma- 100.0 1.1E-52 2.5E-57 368.5 30.2 251 6-256 38-289 (296)
5 TIGR01692 HIBADH 3-hydroxyisob 100.0 5E-52 1.1E-56 363.3 29.8 250 5-254 32-288 (288)
6 PLN02858 fructose-bisphosphate 100.0 6.1E-51 1.3E-55 412.8 28.7 253 4-256 39-294 (1378)
7 TIGR01505 tartro_sem_red 2-hyd 100.0 1.1E-47 2.4E-52 336.3 30.4 251 6-256 36-286 (291)
8 PLN02858 fructose-bisphosphate 100.0 3.1E-48 6.7E-53 393.1 28.8 251 5-255 360-613 (1378)
9 PRK11559 garR tartronate semia 100.0 1.9E-47 4.2E-52 335.5 30.0 251 6-256 39-289 (296)
10 PRK12490 6-phosphogluconate de 100.0 9.9E-44 2.2E-48 312.4 22.8 244 6-255 37-293 (299)
11 PLN02350 phosphogluconate dehy 100.0 4.1E-43 8.9E-48 323.6 23.2 228 6-237 43-298 (493)
12 PRK09599 6-phosphogluconate de 100.0 6.4E-41 1.4E-45 294.8 21.9 244 5-255 36-294 (301)
13 PRK09287 6-phosphogluconate de 100.0 2E-37 4.3E-42 284.5 22.2 221 5-229 26-272 (459)
14 TIGR00872 gnd_rel 6-phosphoglu 100.0 1.5E-34 3.2E-39 254.0 21.7 221 5-230 36-266 (298)
15 PTZ00142 6-phosphogluconate de 100.0 2.3E-33 5.1E-38 258.5 22.4 220 6-229 38-283 (470)
16 TIGR00873 gnd 6-phosphoglucona 100.0 3.2E-33 7E-38 257.6 20.9 220 6-229 36-279 (467)
17 TIGR03026 NDP-sugDHase nucleot 100.0 2.9E-31 6.3E-36 242.9 18.8 212 11-236 61-296 (411)
18 PF03446 NAD_binding_2: NAD bi 100.0 2.9E-30 6.2E-35 207.8 8.9 127 4-131 36-163 (163)
19 PF14833 NAD_binding_11: NAD-b 99.9 3.6E-27 7.7E-32 180.9 13.3 121 133-253 1-122 (122)
20 PRK15182 Vi polysaccharide bio 99.9 1.5E-26 3.4E-31 211.6 16.7 213 10-235 61-292 (425)
21 COG1023 Gnd Predicted 6-phosph 99.9 1.5E-26 3.2E-31 190.3 14.1 228 3-235 34-273 (300)
22 PRK11064 wecC UDP-N-acetyl-D-m 99.9 5E-25 1.1E-29 201.6 18.9 207 10-236 63-295 (415)
23 PRK15057 UDP-glucose 6-dehydro 99.9 1.4E-24 3.1E-29 196.6 19.0 204 11-236 57-283 (388)
24 PRK14618 NAD(P)H-dependent gly 99.9 2.1E-24 4.5E-29 192.2 10.8 227 13-254 62-321 (328)
25 PRK00094 gpsA NAD(P)H-dependen 99.9 1.5E-22 3.2E-27 179.7 13.3 231 12-254 58-323 (325)
26 PRK06129 3-hydroxyacyl-CoA deh 99.9 1.3E-21 2.8E-26 172.8 18.3 221 14-251 71-294 (308)
27 PRK14619 NAD(P)H-dependent gly 99.9 1.8E-22 3.9E-27 178.2 11.5 220 16-254 38-299 (308)
28 PRK12557 H(2)-dependent methyl 99.9 7.5E-21 1.6E-25 169.3 16.1 163 6-176 62-238 (342)
29 COG1004 Ugd Predicted UDP-gluc 99.8 1E-19 2.2E-24 160.8 18.1 209 13-235 64-293 (414)
30 COG0362 Gnd 6-phosphogluconate 99.8 9.5E-19 2.1E-23 153.6 13.5 219 6-228 40-283 (473)
31 PLN02353 probable UDP-glucose 99.8 6.2E-18 1.3E-22 156.5 19.4 208 13-232 66-302 (473)
32 KOG2653 6-phosphogluconate deh 99.7 1.4E-16 3E-21 138.2 14.0 159 15-177 57-226 (487)
33 PRK08229 2-dehydropantoate 2-r 99.7 1.8E-16 3.9E-21 141.8 13.3 215 16-244 65-324 (341)
34 PRK07679 pyrroline-5-carboxyla 99.7 3.6E-16 7.8E-21 136.3 12.6 204 6-240 45-269 (279)
35 PRK07531 bifunctional 3-hydrox 99.7 9.2E-16 2E-20 143.6 14.9 155 13-183 68-226 (495)
36 COG0677 WecC UDP-N-acetyl-D-ma 99.6 5.6E-15 1.2E-19 130.5 14.0 167 7-177 66-253 (436)
37 PLN02688 pyrroline-5-carboxyla 99.6 1.2E-14 2.5E-19 125.8 14.1 210 6-240 42-264 (266)
38 PRK08268 3-hydroxy-acyl-CoA de 99.6 3.4E-14 7.4E-19 133.1 12.5 143 13-179 75-227 (507)
39 PRK09260 3-hydroxybutyryl-CoA 99.5 2E-13 4.4E-18 119.5 12.8 149 12-179 68-222 (288)
40 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.5 3.3E-13 7.2E-18 126.2 12.7 146 13-179 73-225 (503)
41 PRK08269 3-hydroxybutyryl-CoA 99.5 2E-13 4.3E-18 120.8 10.0 138 19-180 73-221 (314)
42 PRK11199 tyrA bifunctional cho 99.5 2.8E-12 6.2E-17 116.1 16.8 144 17-172 134-279 (374)
43 PRK08507 prephenate dehydrogen 99.5 2.4E-11 5.2E-16 105.7 21.4 157 7-177 40-209 (275)
44 TIGR01724 hmd_rel H2-forming N 99.4 3.1E-11 6.7E-16 105.0 16.1 147 6-160 62-222 (341)
45 PRK08655 prephenate dehydrogen 99.4 8.9E-11 1.9E-15 108.4 19.6 155 10-173 43-201 (437)
46 KOG2666 UDP-glucose/GDP-mannos 99.3 5.1E-10 1.1E-14 96.4 16.8 198 15-222 68-290 (481)
47 PRK06130 3-hydroxybutyryl-CoA 99.2 1.4E-10 3.1E-15 102.5 13.0 146 14-180 68-222 (311)
48 PLN02545 3-hydroxybutyryl-CoA 99.2 1.9E-10 4.2E-15 101.0 11.8 145 16-179 74-224 (295)
49 PRK06476 pyrroline-5-carboxyla 99.2 1.5E-09 3.3E-14 93.5 16.4 202 7-237 41-254 (258)
50 PRK07417 arogenate dehydrogena 99.2 1.6E-09 3.5E-14 94.5 16.3 138 7-152 38-188 (279)
51 PRK07530 3-hydroxybutyryl-CoA 99.1 1.4E-09 3.1E-14 95.3 11.7 146 13-178 72-223 (292)
52 PRK07819 3-hydroxybutyryl-CoA 99.0 4.4E-09 9.4E-14 92.1 12.3 148 15-180 75-228 (286)
53 PF00984 UDPG_MGDP_dh: UDP-glu 99.0 1.6E-08 3.4E-13 73.9 11.4 93 133-234 2-94 (96)
54 PRK06035 3-hydroxyacyl-CoA deh 98.9 5.5E-09 1.2E-13 91.6 9.3 146 15-179 76-226 (291)
55 PRK07502 cyclohexadienyl dehyd 98.9 2E-07 4.4E-12 82.3 17.7 121 8-133 47-181 (307)
56 PRK07680 late competence prote 98.9 5E-08 1.1E-12 84.7 13.5 153 12-177 49-205 (273)
57 PRK06545 prephenate dehydrogen 98.9 3.1E-07 6.6E-12 83.0 18.7 149 16-176 51-212 (359)
58 PRK11880 pyrroline-5-carboxyla 98.8 2.6E-07 5.7E-12 79.8 16.7 214 7-240 43-265 (267)
59 COG0240 GpsA Glycerol-3-phosph 98.8 9.4E-08 2E-12 84.0 12.0 217 12-234 58-309 (329)
60 PRK12439 NAD(P)H-dependent gly 98.6 1.1E-06 2.4E-11 78.8 14.0 228 13-253 65-327 (341)
61 TIGR03376 glycerol3P_DH glycer 98.6 6.8E-07 1.5E-11 80.0 12.4 207 13-233 70-329 (342)
62 PRK08293 3-hydroxybutyryl-CoA 98.6 9.8E-07 2.1E-11 77.2 12.4 150 12-179 71-226 (287)
63 PTZ00345 glycerol-3-phosphate 98.5 5.6E-06 1.2E-10 74.7 16.0 224 12-253 80-353 (365)
64 TIGR00112 proC pyrroline-5-car 98.5 1.2E-05 2.5E-10 68.9 16.8 211 7-236 24-243 (245)
65 PF02153 PDH: Prephenate dehyd 98.5 1.4E-05 3E-10 68.9 16.8 117 10-131 29-158 (258)
66 PRK05808 3-hydroxybutyryl-CoA 98.5 2.3E-06 5.1E-11 74.6 11.7 145 14-178 72-222 (282)
67 PLN02712 arogenate dehydrogena 98.5 4.8E-06 1E-10 80.8 14.8 119 7-131 406-537 (667)
68 PRK12921 2-dehydropantoate 2-r 98.4 7E-06 1.5E-10 72.2 14.7 206 16-236 59-300 (305)
69 PF03721 UDPG_MGDP_dh_N: UDP-g 98.4 1.6E-07 3.4E-12 77.0 2.9 103 12-117 63-184 (185)
70 PRK14620 NAD(P)H-dependent gly 98.4 1.3E-05 2.8E-10 71.4 15.2 222 13-252 58-323 (326)
71 PRK12491 pyrroline-5-carboxyla 98.4 3.6E-05 7.9E-10 66.9 16.6 212 7-239 44-266 (272)
72 PRK07066 3-hydroxybutyryl-CoA 98.3 5.3E-05 1.1E-09 67.3 17.0 150 14-180 72-226 (321)
73 COG0287 TyrA Prephenate dehydr 98.3 0.00013 2.8E-09 63.6 17.7 107 20-131 59-171 (279)
74 PTZ00431 pyrroline carboxylate 98.2 0.00022 4.8E-09 61.5 18.0 208 12-239 44-259 (260)
75 PRK14806 bifunctional cyclohex 98.2 1.3E-05 2.7E-10 79.1 11.3 120 8-131 44-177 (735)
76 PRK08818 prephenate dehydrogen 98.2 0.00033 7.2E-09 63.4 19.1 108 16-131 42-155 (370)
77 PRK07634 pyrroline-5-carboxyla 98.0 0.00022 4.8E-09 60.7 14.5 152 11-177 52-209 (245)
78 COG0345 ProC Pyrroline-5-carbo 97.9 0.0012 2.6E-08 57.0 17.2 207 11-240 48-264 (266)
79 PRK05479 ketol-acid reductoiso 97.9 0.00046 1E-08 61.4 13.9 153 8-169 57-223 (330)
80 PLN02256 arogenate dehydrogena 97.8 0.00049 1.1E-08 60.8 13.3 116 10-131 76-204 (304)
81 PRK06522 2-dehydropantoate 2-r 97.8 0.00073 1.6E-08 59.2 13.5 205 16-238 58-299 (304)
82 PRK06928 pyrroline-5-carboxyla 97.7 0.00092 2E-08 58.3 13.4 152 12-178 51-209 (277)
83 PLN02712 arogenate dehydrogena 97.7 0.00037 7.9E-09 67.9 10.7 119 8-131 90-220 (667)
84 PF00393 6PGD: 6-phosphoglucon 97.6 0.00024 5.1E-09 61.8 8.0 96 135-230 1-106 (291)
85 PRK06249 2-dehydropantoate 2-r 97.6 0.0038 8.1E-08 55.3 15.7 201 21-237 68-309 (313)
86 cd01065 NAD_bind_Shikimate_DH 97.6 2.8E-05 6E-10 61.4 1.7 67 15-87 71-138 (155)
87 TIGR00745 apbA_panE 2-dehydrop 97.6 0.0037 8.1E-08 54.3 15.3 209 16-236 51-290 (293)
88 TIGR01723 hmd_TIGR 5,10-methen 97.5 0.0048 1E-07 53.0 14.1 139 10-157 124-266 (340)
89 PRK00961 H(2)-dependent methyl 97.5 0.0043 9.2E-08 53.3 13.6 139 10-157 126-268 (342)
90 TIGR01915 npdG NADPH-dependent 97.5 0.00067 1.4E-08 57.0 8.9 117 17-140 60-198 (219)
91 PRK07574 formate dehydrogenase 97.5 0.0008 1.7E-08 61.3 9.8 74 8-83 231-304 (385)
92 PRK09287 6-phosphogluconate de 97.5 0.0012 2.5E-08 61.6 10.8 131 109-239 271-423 (459)
93 TIGR00873 gnd 6-phosphoglucona 97.5 0.0014 3E-08 61.3 11.2 131 109-239 278-431 (467)
94 PLN03139 formate dehydrogenase 97.4 0.0012 2.6E-08 60.2 9.9 76 6-83 236-311 (386)
95 COG2085 Predicted dinucleotide 97.2 0.0011 2.3E-08 55.0 6.4 119 15-139 50-188 (211)
96 PRK06436 glycerate dehydrogena 97.1 0.00098 2.1E-08 58.8 5.9 65 16-82 164-228 (303)
97 PTZ00142 6-phosphogluconate de 97.1 0.0084 1.8E-07 56.1 12.0 129 109-237 282-435 (470)
98 PRK13243 glyoxylate reductase; 97.1 0.0013 2.9E-08 58.8 6.4 69 11-82 191-259 (333)
99 PRK08605 D-lactate dehydrogena 97.1 0.0015 3.2E-08 58.5 6.6 74 12-87 187-262 (332)
100 TIGR00465 ilvC ketol-acid redu 96.9 0.041 8.9E-07 48.9 14.4 109 7-125 42-161 (314)
101 COG4007 Predicted dehydrogenas 96.9 0.05 1.1E-06 46.5 13.7 156 6-169 63-233 (340)
102 PF03807 F420_oxidored: NADP o 96.7 0.00094 2E-08 48.2 1.7 51 9-64 44-95 (96)
103 TIGR01327 PGDH D-3-phosphoglyc 96.6 0.0045 9.8E-08 58.8 6.0 78 8-87 176-255 (525)
104 COG1893 ApbA Ketopantoate redu 96.4 0.19 4.1E-06 44.5 15.0 204 19-239 61-302 (307)
105 PRK14194 bifunctional 5,10-met 96.3 0.0052 1.1E-07 54.0 4.7 50 8-66 179-234 (301)
106 PRK06141 ornithine cyclodeamin 96.2 0.0028 6E-08 56.3 2.3 66 13-87 177-242 (314)
107 PF10727 Rossmann-like: Rossma 96.1 0.0042 9.2E-08 47.6 2.5 65 12-83 55-121 (127)
108 smart00859 Semialdhyde_dh Semi 96.0 0.008 1.7E-07 45.5 3.6 39 24-66 64-102 (122)
109 PRK13581 D-3-phosphoglycerate 96.0 0.012 2.6E-07 55.9 5.5 77 8-87 178-256 (526)
110 PRK15469 ghrA bifunctional gly 95.9 0.02 4.4E-07 50.8 6.5 66 16-83 181-246 (312)
111 PRK06444 prephenate dehydrogen 95.9 0.39 8.4E-06 39.7 13.5 99 6-131 18-121 (197)
112 PRK12480 D-lactate dehydrogena 95.9 0.025 5.5E-07 50.6 6.8 68 14-83 187-254 (330)
113 PRK13403 ketol-acid reductoiso 95.7 0.014 3E-07 51.8 4.4 52 8-63 55-106 (335)
114 PRK11154 fadJ multifunctional 95.7 0.23 5E-06 49.0 13.3 143 13-175 378-525 (708)
115 PRK11730 fadB multifunctional 95.7 0.28 6.1E-06 48.5 13.7 146 13-178 381-531 (715)
116 PRK05708 2-dehydropantoate 2-r 95.6 0.24 5.1E-06 43.8 11.9 203 23-242 68-303 (305)
117 TIGR02440 FadJ fatty oxidation 95.6 0.27 5.9E-06 48.5 13.4 143 13-175 373-520 (699)
118 PF01210 NAD_Gly3P_dh_N: NAD-d 95.5 0.012 2.6E-07 46.7 3.0 64 12-79 56-120 (157)
119 PRK13302 putative L-aspartate 95.4 0.039 8.4E-07 48.0 6.1 65 13-84 55-119 (271)
120 PRK11861 bifunctional prephena 95.4 1.1 2.4E-05 44.0 16.7 100 29-132 1-112 (673)
121 PRK11790 D-3-phosphoglycerate 95.3 0.048 1E-06 50.2 6.7 70 12-83 190-259 (409)
122 PRK14188 bifunctional 5,10-met 95.3 0.022 4.9E-07 50.0 4.3 50 8-66 178-233 (296)
123 TIGR02437 FadB fatty oxidation 95.0 0.55 1.2E-05 46.5 13.2 143 13-179 381-532 (714)
124 COG1250 FadB 3-hydroxyacyl-CoA 94.9 0.82 1.8E-05 40.4 12.8 145 16-180 74-224 (307)
125 PLN02928 oxidoreductase family 94.8 0.066 1.4E-06 48.2 5.9 66 15-82 216-281 (347)
126 PRK15409 bifunctional glyoxyla 94.7 0.15 3.3E-06 45.5 7.9 75 10-87 186-262 (323)
127 PRK14179 bifunctional 5,10-met 94.6 0.037 8.1E-07 48.3 3.7 42 16-66 192-233 (284)
128 PRK08410 2-hydroxyacid dehydro 94.5 0.11 2.3E-06 46.2 6.3 70 16-87 187-257 (311)
129 TIGR02441 fa_ox_alpha_mit fatt 94.2 0.67 1.5E-05 46.0 11.9 140 12-175 402-550 (737)
130 PF10728 DUF2520: Domain of un 94.2 0.61 1.3E-05 36.0 9.3 71 102-176 3-80 (132)
131 TIGR00507 aroE shikimate 5-deh 94.2 0.029 6.4E-07 48.6 2.2 66 17-88 169-237 (270)
132 COG1052 LdhA Lactate dehydroge 94.2 0.13 2.7E-06 46.0 6.2 75 11-88 187-263 (324)
133 PRK06487 glycerate dehydrogena 94.2 0.16 3.4E-06 45.2 6.9 69 17-87 189-259 (317)
134 COG0111 SerA Phosphoglycerate 93.9 0.078 1.7E-06 47.3 4.4 78 8-87 180-259 (324)
135 PF02737 3HCDH_N: 3-hydroxyacy 93.9 0.11 2.3E-06 42.3 4.9 109 12-129 66-177 (180)
136 PRK00257 erythronate-4-phospha 93.9 0.12 2.7E-06 47.1 5.7 72 14-87 156-233 (381)
137 PRK06932 glycerate dehydrogena 93.8 0.18 3.9E-06 44.8 6.5 70 16-87 188-259 (314)
138 PF02826 2-Hacid_dh_C: D-isome 93.8 0.039 8.5E-07 44.7 2.1 72 8-82 75-146 (178)
139 PRK13304 L-aspartate dehydroge 93.3 0.24 5.1E-06 42.9 6.2 80 11-97 47-130 (265)
140 PLN02306 hydroxypyruvate reduc 93.1 0.28 6.1E-06 44.8 6.6 65 16-82 227-291 (386)
141 KOG0069 Glyoxylate/hydroxypyru 92.8 0.23 4.9E-06 44.4 5.4 70 7-79 200-269 (336)
142 PF05222 AlaDh_PNT_N: Alanine 92.8 0.33 7.1E-06 37.7 5.7 77 5-93 44-120 (136)
143 PLN02350 phosphogluconate dehy 92.6 1.2 2.6E-05 42.1 10.2 103 134-236 326-443 (493)
144 TIGR02853 spore_dpaA dipicolin 92.2 0.27 5.8E-06 43.1 5.1 69 10-88 192-262 (287)
145 PRK08306 dipicolinate synthase 92.2 0.16 3.5E-06 44.7 3.7 77 7-88 37-121 (296)
146 PF00393 6PGD: 6-phosphoglucon 92.0 1.5 3.3E-05 38.4 9.4 109 131-239 135-258 (291)
147 PF07991 IlvN: Acetohydroxy ac 91.6 0.15 3.2E-06 40.7 2.5 53 7-63 43-95 (165)
148 COG4074 Mth H2-forming N5,N10- 90.7 3.7 7.9E-05 34.6 9.9 100 11-118 125-228 (343)
149 TIGR02371 ala_DH_arch alanine 90.6 0.2 4.3E-06 44.7 2.7 65 13-86 180-244 (325)
150 PF01408 GFO_IDH_MocA: Oxidore 90.3 1.3 2.8E-05 32.8 6.6 68 10-84 45-116 (120)
151 PRK08306 dipicolinate synthase 90.2 0.47 1E-05 41.7 4.7 68 9-86 192-261 (296)
152 PF09130 DUF1932: Domain of un 90.2 0.32 7E-06 33.3 2.9 70 160-237 1-72 (73)
153 TIGR03855 NAD_NadX aspartate d 90.0 1.1 2.4E-05 37.9 6.6 68 11-85 22-93 (229)
154 COG0002 ArgC Acetylglutamate s 88.9 0.5 1.1E-05 42.2 3.8 120 18-144 62-197 (349)
155 PRK15438 erythronate-4-phospha 88.9 0.82 1.8E-05 41.7 5.3 70 16-87 158-233 (378)
156 cd01075 NAD_bind_Leu_Phe_Val_D 88.1 1.3 2.7E-05 36.7 5.6 72 8-89 67-141 (200)
157 COG2423 Predicted ornithine cy 87.8 0.49 1.1E-05 42.3 3.1 67 13-88 183-250 (330)
158 cd05212 NAD_bind_m-THF_DH_Cycl 87.6 0.91 2E-05 35.4 4.1 50 8-66 48-103 (140)
159 PRK05225 ketol-acid reductoiso 87.3 0.84 1.8E-05 42.5 4.3 50 6-60 79-128 (487)
160 PRK05678 succinyl-CoA syntheta 86.7 3.1 6.7E-05 36.5 7.4 70 11-85 49-120 (291)
161 PF10100 DUF2338: Uncharacteri 86.2 27 0.00059 32.1 13.3 177 50-239 162-395 (429)
162 PF03720 UDPG_MGDP_dh_C: UDP-g 86.2 0.25 5.4E-06 36.4 0.2 51 11-64 52-102 (106)
163 COG5495 Uncharacterized conser 85.7 21 0.00046 30.4 11.8 141 17-167 56-205 (289)
164 TIGR01019 sucCoAalpha succinyl 85.2 4.2 9E-05 35.7 7.5 70 11-85 47-118 (286)
165 PF13380 CoA_binding_2: CoA bi 85.2 0.87 1.9E-05 34.2 2.8 66 11-85 41-106 (116)
166 PTZ00187 succinyl-CoA syntheta 85.0 3.6 7.8E-05 36.6 7.0 70 11-85 72-144 (317)
167 PRK11579 putative oxidoreducta 84.8 3.6 7.7E-05 36.8 7.1 69 12-87 49-121 (346)
168 COG4408 Uncharacterized protei 84.6 30 0.00064 31.1 13.8 202 25-239 137-397 (431)
169 COG0362 Gnd 6-phosphogluconate 83.7 14 0.00031 33.9 10.2 107 132-238 313-434 (473)
170 TIGR01850 argC N-acetyl-gamma- 83.7 1.3 2.8E-05 39.9 3.8 42 18-66 61-102 (346)
171 TIGR00036 dapB dihydrodipicoli 83.4 5.2 0.00011 34.6 7.3 71 11-88 54-125 (266)
172 KOG2380 Prephenate dehydrogena 83.4 9.4 0.0002 34.4 8.7 115 11-130 93-219 (480)
173 TIGR01851 argC_other N-acetyl- 83.0 1.5 3.2E-05 38.9 3.7 40 18-64 42-81 (310)
174 KOG2711 Glycerol-3-phosphate d 83.0 4.7 0.0001 36.1 6.8 143 13-162 93-264 (372)
175 PF01118 Semialdhyde_dh: Semia 82.6 0.97 2.1E-05 34.0 2.2 41 19-66 60-100 (121)
176 PRK14186 bifunctional 5,10-met 81.7 2.1 4.5E-05 37.7 4.1 50 8-66 178-233 (297)
177 PRK10206 putative oxidoreducta 81.3 7.4 0.00016 34.9 7.7 71 12-89 49-123 (344)
178 PF08546 ApbA_C: Ketopantoate 81.0 7.1 0.00015 29.2 6.5 86 145-235 36-123 (125)
179 PLN02522 ATP citrate (pro-S)-l 80.6 6.3 0.00014 38.2 7.3 71 11-85 61-134 (608)
180 PF02882 THF_DHG_CYH_C: Tetrah 80.4 1.7 3.7E-05 34.7 2.9 51 8-67 56-112 (160)
181 TIGR01761 thiaz-red thiazoliny 80.2 5.4 0.00012 35.9 6.4 71 8-85 44-119 (343)
182 PRK14173 bifunctional 5,10-met 80.1 2.4 5.3E-05 37.1 4.0 50 8-66 175-230 (287)
183 PRK13303 L-aspartate dehydroge 79.8 4.4 9.6E-05 35.0 5.5 80 12-98 48-131 (265)
184 PRK06823 ornithine cyclodeamin 78.9 1.4 3.1E-05 39.1 2.3 65 14-87 181-246 (315)
185 PRK11863 N-acetyl-gamma-glutam 78.8 2.1 4.5E-05 38.1 3.2 40 18-64 43-82 (313)
186 PRK14166 bifunctional 5,10-met 78.7 3 6.4E-05 36.5 4.1 50 8-66 177-232 (282)
187 PRK09424 pntA NAD(P) transhydr 78.3 4.1 8.8E-05 38.7 5.2 71 5-90 47-118 (509)
188 PRK06407 ornithine cyclodeamin 78.2 1.3 2.9E-05 39.0 1.9 66 13-87 170-236 (301)
189 COG0673 MviM Predicted dehydro 78.1 7.1 0.00015 34.4 6.6 71 11-88 50-125 (342)
190 PF03447 NAD_binding_3: Homose 77.9 4.7 0.0001 29.8 4.6 66 12-84 44-114 (117)
191 PRK14189 bifunctional 5,10-met 77.7 2.8 6.2E-05 36.7 3.7 50 8-66 178-233 (285)
192 cd01079 NAD_bind_m-THF_DH NAD 77.5 2.2 4.8E-05 35.2 2.8 38 19-65 120-158 (197)
193 PLN00125 Succinyl-CoA ligase [ 76.4 7.2 0.00016 34.4 5.9 69 11-85 53-125 (300)
194 PRK07340 ornithine cyclodeamin 75.8 2 4.3E-05 37.9 2.2 62 16-87 179-240 (304)
195 COG0074 SucD Succinyl-CoA synt 75.0 10 0.00022 33.1 6.2 72 12-88 50-125 (293)
196 PRK09310 aroDE bifunctional 3- 74.9 2.6 5.6E-05 39.7 2.9 51 23-87 388-438 (477)
197 PRK08618 ornithine cyclodeamin 74.5 3.6 7.8E-05 36.6 3.6 47 14-69 181-227 (325)
198 TIGR00561 pntA NAD(P) transhyd 74.2 6.7 0.00015 37.3 5.4 72 5-90 46-117 (511)
199 PF01113 DapB_N: Dihydrodipico 74.1 11 0.00023 28.5 5.7 60 10-76 52-112 (124)
200 TIGR01921 DAP-DH diaminopimela 72.9 9.4 0.0002 34.1 5.7 108 12-144 47-164 (324)
201 TIGR01244 conserved hypothetic 72.7 30 0.00065 26.5 7.9 77 30-129 11-93 (135)
202 PRK14170 bifunctional 5,10-met 72.6 4.7 0.0001 35.2 3.8 50 8-66 177-232 (284)
203 PF04273 DUF442: Putative phos 72.4 37 0.0008 25.2 9.5 83 27-131 8-95 (110)
204 KOG2304 3-hydroxyacyl-CoA dehy 72.4 15 0.00032 31.3 6.4 149 13-180 84-238 (298)
205 PRK00436 argC N-acetyl-gamma-g 72.3 4.1 8.9E-05 36.6 3.5 38 22-66 65-102 (343)
206 TIGR02717 AcCoA-syn-alpha acet 72.3 9.2 0.0002 35.7 5.9 69 11-85 50-125 (447)
207 PRK07589 ornithine cyclodeamin 72.3 3.6 7.8E-05 37.1 3.1 67 13-86 181-247 (346)
208 cd03319 L-Ala-DL-Glu_epimerase 71.4 39 0.00084 29.7 9.4 73 56-128 178-256 (316)
209 PLN02616 tetrahydrofolate dehy 71.3 5.6 0.00012 36.0 4.0 100 8-147 251-356 (364)
210 PRK14193 bifunctional 5,10-met 71.2 5.3 0.00011 35.0 3.7 42 16-66 194-235 (284)
211 PRK03739 2-isopropylmalate syn 70.9 1E+02 0.0022 29.7 12.9 101 64-164 48-162 (552)
212 PRK10265 chaperone-modulator p 70.8 38 0.00082 24.6 7.8 70 158-238 12-82 (101)
213 PRK14169 bifunctional 5,10-met 70.7 5 0.00011 35.1 3.5 50 8-66 176-231 (282)
214 PF07479 NAD_Gly3P_dh_C: NAD-d 70.4 15 0.00032 28.9 5.8 97 136-234 24-137 (149)
215 PLN02819 lysine-ketoglutarate 70.1 7.6 0.00016 40.1 5.1 65 16-88 636-704 (1042)
216 cd03315 MLE_like Muconate lact 70.1 48 0.001 28.3 9.5 71 56-126 130-206 (265)
217 PRK14177 bifunctional 5,10-met 70.1 6 0.00013 34.6 3.8 50 8-66 179-234 (284)
218 COG0059 IlvC Ketol-acid reduct 69.8 5.5 0.00012 35.2 3.5 49 7-59 57-105 (338)
219 PRK06349 homoserine dehydrogen 69.5 42 0.00091 31.1 9.5 125 12-165 57-188 (426)
220 cd03321 mandelate_racemase Man 69.1 56 0.0012 29.3 10.1 66 56-121 187-258 (355)
221 PLN02516 methylenetetrahydrofo 69.0 6.1 0.00013 34.9 3.6 50 8-66 187-242 (299)
222 PRK05568 flavodoxin; Provision 68.8 48 0.001 25.1 8.7 85 21-122 44-139 (142)
223 PRK14181 bifunctional 5,10-met 68.8 6.1 0.00013 34.6 3.6 42 16-66 191-232 (287)
224 PRK14183 bifunctional 5,10-met 68.4 6.4 0.00014 34.4 3.6 50 8-66 177-232 (281)
225 TIGR00973 leuA_bact 2-isopropy 68.3 67 0.0015 30.5 10.7 103 64-166 19-132 (494)
226 PLN02383 aspartate semialdehyd 68.1 6.6 0.00014 35.4 3.8 38 21-65 65-102 (344)
227 PF02423 OCD_Mu_crystall: Orni 67.7 2.6 5.7E-05 37.3 1.2 60 14-80 181-240 (313)
228 PRK14185 bifunctional 5,10-met 67.5 6.7 0.00015 34.5 3.6 41 17-66 196-236 (293)
229 PRK14190 bifunctional 5,10-met 67.2 6.1 0.00013 34.6 3.3 50 8-66 178-233 (284)
230 PRK14171 bifunctional 5,10-met 66.9 7.1 0.00015 34.2 3.6 95 8-148 179-279 (288)
231 PRK14172 bifunctional 5,10-met 66.8 6.9 0.00015 34.2 3.5 50 8-66 178-233 (278)
232 PRK14187 bifunctional 5,10-met 66.8 6.9 0.00015 34.4 3.5 97 8-148 180-283 (294)
233 PRK10792 bifunctional 5,10-met 66.4 8.5 0.00018 33.7 4.0 50 8-66 179-234 (285)
234 cd01080 NAD_bind_m-THF_DH_Cycl 66.4 6.2 0.00013 31.7 3.0 39 17-64 79-117 (168)
235 PLN02897 tetrahydrofolate dehy 66.3 7.3 0.00016 35.0 3.6 50 8-66 234-289 (345)
236 PRK14180 bifunctional 5,10-met 65.7 7.5 0.00016 34.0 3.5 50 8-66 178-233 (282)
237 PRK06046 alanine dehydrogenase 65.4 4.4 9.5E-05 36.1 2.1 64 14-87 183-246 (326)
238 PRK06270 homoserine dehydrogen 65.2 15 0.00033 32.9 5.6 120 17-165 79-209 (341)
239 PRK14175 bifunctional 5,10-met 65.0 8.5 0.00018 33.7 3.8 50 8-66 178-233 (286)
240 PRK00048 dihydrodipicolinate r 64.9 26 0.00056 30.0 6.8 30 57-88 62-91 (257)
241 PRK14168 bifunctional 5,10-met 64.9 8.7 0.00019 33.8 3.8 90 17-147 200-290 (297)
242 PRK00915 2-isopropylmalate syn 64.7 1.3E+02 0.0029 28.6 12.3 103 64-166 22-135 (513)
243 KOG3124 Pyrroline-5-carboxylat 64.7 94 0.002 26.9 15.0 207 8-240 44-265 (267)
244 PLN02968 Probable N-acetyl-gam 64.1 4.8 0.0001 36.8 2.1 36 23-66 102-137 (381)
245 PF01680 SOR_SNZ: SOR/SNZ fami 64.0 64 0.0014 26.3 8.1 102 74-177 86-199 (208)
246 PRK14176 bifunctional 5,10-met 63.7 8.2 0.00018 33.8 3.4 50 8-66 184-239 (287)
247 PF13591 MerR_2: MerR HTH fami 63.6 48 0.001 23.1 7.5 69 158-237 5-73 (84)
248 cd05213 NAD_bind_Glutamyl_tRNA 63.0 6.8 0.00015 34.6 2.9 43 17-63 230-273 (311)
249 PRK14182 bifunctional 5,10-met 62.9 9 0.00019 33.5 3.5 50 8-66 177-232 (282)
250 COG0761 lytB 4-Hydroxy-3-methy 62.9 17 0.00036 31.8 5.0 75 2-85 44-118 (294)
251 KOG2741 Dimeric dihydrodiol de 62.3 34 0.00075 30.7 7.0 73 14-92 59-134 (351)
252 COG2716 GcvR Glycine cleavage 62.2 9.1 0.0002 30.8 3.1 106 58-170 6-123 (176)
253 COG1748 LYS9 Saccharopine dehy 61.8 13 0.00028 34.1 4.4 73 16-96 59-132 (389)
254 PRK14178 bifunctional 5,10-met 61.7 7.9 0.00017 33.8 3.0 50 8-66 172-227 (279)
255 PRK14167 bifunctional 5,10-met 60.7 11 0.00024 33.2 3.7 41 17-66 196-236 (297)
256 PRK14174 bifunctional 5,10-met 60.1 9.8 0.00021 33.5 3.3 41 17-66 198-238 (295)
257 PRK08374 homoserine dehydrogen 60.1 35 0.00076 30.6 6.9 118 18-165 82-205 (336)
258 PRK14184 bifunctional 5,10-met 59.6 9.1 0.0002 33.5 3.0 41 17-66 196-236 (286)
259 TIGR01753 flav_short flavodoxi 59.4 72 0.0016 23.8 9.1 84 23-122 43-139 (140)
260 PRK14191 bifunctional 5,10-met 59.3 8.8 0.00019 33.6 2.8 50 8-66 177-232 (285)
261 TIGR01470 cysG_Nterm siroheme 58.9 81 0.0017 26.0 8.4 52 55-106 68-124 (205)
262 PF03435 Saccharop_dh: Sacchar 58.8 12 0.00026 33.9 3.8 18 19-36 61-78 (386)
263 PRK01045 ispH 4-hydroxy-3-meth 57.0 20 0.00044 31.6 4.7 70 5-83 46-115 (298)
264 PRK06756 flavodoxin; Provision 55.2 52 0.0011 25.3 6.4 87 21-122 45-143 (148)
265 PHA02518 ParA-like protein; Pr 55.0 96 0.0021 24.9 8.3 102 19-120 92-203 (211)
266 TIGR02534 mucon_cyclo muconate 54.7 42 0.00092 30.3 6.6 72 56-127 188-265 (368)
267 PRK09389 (R)-citramalate synth 54.6 1.6E+02 0.0035 27.9 10.6 98 64-165 20-128 (488)
268 PLN02353 probable UDP-glucose 54.4 20 0.00043 33.8 4.5 65 13-86 400-464 (473)
269 cd03325 D-galactonate_dehydrat 54.4 40 0.00087 30.2 6.4 72 49-120 169-247 (352)
270 TIGR03217 4OH_2_O_val_ald 4-hy 54.2 1.6E+02 0.0035 26.3 11.2 127 36-176 171-312 (333)
271 PF11115 DUF2623: Protein of u 53.3 25 0.00055 25.1 3.8 28 150-177 51-78 (95)
272 KOG3007 Mu-crystallin [Amino a 53.3 12 0.00025 32.6 2.5 90 13-114 195-285 (333)
273 TIGR00936 ahcY adenosylhomocys 53.2 44 0.00095 30.9 6.4 51 10-67 236-286 (406)
274 PRK05096 guanosine 5'-monophos 53.1 1.1E+02 0.0023 27.6 8.6 73 103-177 153-235 (346)
275 PF03162 Y_phosphatase2: Tyros 52.8 94 0.002 24.7 7.6 112 55-176 32-148 (164)
276 cd03329 MR_like_4 Mandelate ra 52.7 77 0.0017 28.6 8.0 66 56-121 190-262 (368)
277 cd03322 rpsA The starvation se 52.3 92 0.002 28.0 8.4 75 57-131 165-250 (361)
278 COG3870 Uncharacterized protei 51.8 56 0.0012 23.9 5.4 56 68-125 11-66 (109)
279 TIGR02853 spore_dpaA dipicolin 51.8 16 0.00034 32.0 3.2 70 12-86 41-118 (287)
280 TIGR00977 LeuA_rel 2-isopropyl 50.8 2.1E+02 0.0046 27.4 10.8 103 64-166 19-137 (526)
281 PF06153 DUF970: Protein of un 50.4 30 0.00065 25.7 4.0 57 67-125 10-66 (109)
282 TIGR00518 alaDH alanine dehydr 50.2 64 0.0014 29.3 7.0 69 5-86 47-115 (370)
283 PRK14017 galactonate dehydrata 50.1 51 0.0011 30.0 6.4 66 56-121 178-249 (382)
284 PRK12549 shikimate 5-dehydroge 50.1 13 0.00028 32.4 2.4 65 17-87 184-249 (284)
285 PRK14874 aspartate-semialdehyd 49.7 19 0.00041 32.2 3.5 37 22-65 60-96 (334)
286 PRK06703 flavodoxin; Provision 49.6 86 0.0019 24.1 6.9 64 22-88 45-120 (151)
287 PRK12360 4-hydroxy-3-methylbut 49.2 38 0.00082 29.6 5.1 71 5-84 47-119 (281)
288 COG0214 SNZ1 Pyridoxine biosyn 48.8 1.1E+02 0.0023 26.2 7.4 102 74-177 92-205 (296)
289 PRK00258 aroE shikimate 5-dehy 48.7 10 0.00022 32.9 1.5 65 19-87 179-243 (278)
290 PTZ00075 Adenosylhomocysteinas 48.4 13 0.00029 34.9 2.3 49 11-66 296-344 (476)
291 PRK14847 hypothetical protein; 48.4 2.1E+02 0.0045 25.8 11.3 102 64-165 50-165 (333)
292 PRK10569 NAD(P)H-dependent FMN 48.3 1E+02 0.0023 25.0 7.4 102 17-123 58-169 (191)
293 PRK05583 ribosomal protein L7A 48.2 51 0.0011 24.1 5.0 33 55-87 33-65 (104)
294 cd03318 MLE Muconate Lactonizi 48.0 63 0.0014 29.1 6.6 66 56-121 189-260 (365)
295 PRK06199 ornithine cyclodeamin 47.8 13 0.00028 34.0 2.1 25 13-37 211-235 (379)
296 PF00670 AdoHcyase_NAD: S-aden 47.7 7.2 0.00016 31.2 0.4 52 11-69 65-116 (162)
297 cd07942 DRE_TIM_LeuA Mycobacte 46.9 2E+02 0.0043 25.2 11.3 101 64-165 19-134 (284)
298 cd01483 E1_enzyme_family Super 46.6 56 0.0012 24.9 5.3 38 54-92 88-125 (143)
299 PRK05476 S-adenosyl-L-homocyst 46.4 30 0.00065 32.2 4.3 51 11-68 254-304 (425)
300 COG2247 LytB Putative cell wal 46.3 41 0.00089 29.9 4.8 48 98-145 75-122 (337)
301 PLN02494 adenosylhomocysteinas 45.9 26 0.00056 33.0 3.8 51 9-66 294-344 (477)
302 cd03328 MR_like_3 Mandelate ra 44.8 67 0.0015 28.8 6.3 71 51-121 177-256 (352)
303 PRK08195 4-hyroxy-2-oxovalerat 44.7 2.3E+02 0.0051 25.3 10.1 129 36-176 172-313 (337)
304 PF03435 Saccharop_dh: Sacchar 44.5 45 0.00097 30.2 5.1 31 54-86 66-96 (386)
305 PF00682 HMGL-like: HMGL-like 43.5 1.9E+02 0.0041 24.0 10.3 103 65-167 11-124 (237)
306 PRK08040 putative semialdehyde 43.2 19 0.00041 32.3 2.4 40 18-64 58-98 (336)
307 TIGR01296 asd_B aspartate-semi 43.1 24 0.00052 31.6 3.1 37 21-64 57-93 (339)
308 TIGR02992 ectoine_eutC ectoine 42.5 23 0.0005 31.5 2.8 45 15-67 184-228 (326)
309 PRK05671 aspartate-semialdehyd 42.3 27 0.0006 31.3 3.3 37 23-66 64-100 (336)
310 KOG4230 C1-tetrahydrofolate sy 42.1 22 0.00048 34.3 2.7 43 16-67 196-238 (935)
311 COG1648 CysG Siroheme synthase 42.0 2E+02 0.0044 23.9 8.3 52 55-106 71-127 (210)
312 cd00401 AdoHcyase S-adenosyl-L 42.0 55 0.0012 30.3 5.3 49 9-64 242-290 (413)
313 cd03316 MR_like Mandelate race 41.6 1.2E+02 0.0027 27.0 7.5 65 56-120 190-260 (357)
314 PRK06728 aspartate-semialdehyd 41.5 32 0.00069 31.1 3.6 38 21-65 64-101 (347)
315 cd03327 MR_like_2 Mandelate ra 41.2 1.3E+02 0.0029 26.7 7.6 71 56-126 172-248 (341)
316 TIGR00561 pntA NAD(P) transhyd 40.2 19 0.00041 34.3 2.0 40 19-64 241-285 (511)
317 PRK15072 bifunctional D-altron 40.2 87 0.0019 28.7 6.3 66 56-121 207-278 (404)
318 KOG2305 3-hydroxyacyl-CoA dehy 40.1 1.8E+02 0.0039 24.9 7.5 150 15-180 74-227 (313)
319 KOG0525 Branched chain alpha-k 40.0 47 0.001 28.4 4.1 89 4-94 217-308 (362)
320 COG1799 Uncharacterized protei 40.0 26 0.00056 28.1 2.4 30 49-78 90-120 (167)
321 PF00382 TFIIB: Transcription 39.6 63 0.0014 21.4 4.1 29 213-241 2-30 (71)
322 cd03323 D-glucarate_dehydratas 38.3 2E+02 0.0043 26.3 8.4 69 51-121 209-282 (395)
323 TIGR00216 ispH_lytB (E)-4-hydr 38.2 85 0.0018 27.4 5.6 68 6-82 46-114 (280)
324 cd03324 rTSbeta_L-fuconate_deh 38.0 1.9E+02 0.004 26.8 8.1 67 55-121 240-315 (415)
325 PRK06091 membrane protein FdrA 37.9 75 0.0016 30.6 5.5 65 15-85 104-171 (555)
326 PRK14192 bifunctional 5,10-met 37.9 27 0.00058 30.6 2.5 40 17-65 194-233 (283)
327 PRK08291 ectoine utilization p 37.7 26 0.00055 31.3 2.4 24 15-38 187-210 (330)
328 PRK07714 hypothetical protein; 37.6 30 0.00065 25.0 2.4 33 55-87 34-66 (100)
329 PLN02746 hydroxymethylglutaryl 37.6 3.1E+02 0.0068 24.8 11.2 112 50-166 40-177 (347)
330 cd04728 ThiG Thiazole synthase 37.0 2.5E+02 0.0054 24.1 8.0 75 54-143 121-195 (248)
331 COG3288 PntA NAD/NADP transhyd 37.0 26 0.00056 31.2 2.2 43 19-64 238-282 (356)
332 cd04893 ACT_GcvR_1 ACT domains 37.0 99 0.0021 20.9 4.8 57 63-124 8-66 (77)
333 cd00959 DeoC 2-deoxyribose-5-p 36.9 2.3E+02 0.005 23.1 9.1 69 17-88 73-151 (203)
334 cd05311 NAD_bind_2_malic_enz N 36.5 41 0.00089 28.2 3.3 61 17-87 89-150 (226)
335 PRK09250 fructose-bisphosphate 35.8 3.2E+02 0.0069 24.7 8.9 81 14-94 147-243 (348)
336 PRK06242 flavodoxin; Provision 35.6 1.2E+02 0.0026 23.0 5.7 65 21-90 39-111 (150)
337 cd03326 MR_like_1 Mandelate ra 35.6 2.8E+02 0.0061 25.3 8.8 66 56-121 206-277 (385)
338 COG0190 FolD 5,10-methylene-te 35.4 43 0.00094 29.3 3.3 43 16-67 190-232 (283)
339 TIGR03566 FMN_reduc_MsuE FMN r 34.9 1.8E+02 0.0039 22.9 6.8 26 18-43 61-91 (174)
340 PF02629 CoA_binding: CoA bind 34.7 55 0.0012 23.2 3.3 28 12-39 47-76 (96)
341 PRK04207 glyceraldehyde-3-phos 34.4 50 0.0011 29.6 3.7 21 229-249 259-279 (341)
342 PF02401 LYTB: LytB protein; 34.3 28 0.00061 30.4 2.0 69 5-82 44-112 (281)
343 PF07131 DUF1382: Protein of u 34.0 35 0.00077 22.3 1.9 28 68-95 10-37 (61)
344 PF01113 DapB_N: Dihydrodipico 34.0 62 0.0013 24.2 3.7 29 55-85 67-95 (124)
345 PRK00048 dihydrodipicolinate r 33.8 1.1E+02 0.0024 26.0 5.7 69 12-89 47-116 (257)
346 cd01840 SGNH_hydrolase_yrhL_li 33.8 62 0.0014 24.8 3.8 60 25-87 50-116 (150)
347 TIGR01927 menC_gamma/gm+ o-suc 33.6 2.6E+02 0.0056 24.6 8.1 37 56-92 155-195 (307)
348 cd04733 OYE_like_2_FMN Old yel 33.1 1.7E+02 0.0038 26.0 7.0 40 47-86 207-254 (338)
349 cd03320 OSBS o-Succinylbenzoat 32.8 1.8E+02 0.0039 24.8 6.8 36 55-90 127-163 (263)
350 TIGR02467 CbiE precorrin-6y C5 32.3 2.1E+02 0.0046 23.2 7.0 26 99-124 67-92 (204)
351 PRK13601 putative L7Ae-like ri 32.2 47 0.001 23.2 2.5 33 55-87 24-56 (82)
352 PRK03501 ppnK inorganic polyph 32.2 1.1E+02 0.0025 26.3 5.4 46 65-118 14-59 (264)
353 PLN02321 2-isopropylmalate syn 31.9 5.1E+02 0.011 25.6 10.4 101 64-165 104-224 (632)
354 PF03808 Glyco_tran_WecB: Glyc 31.8 2.6E+02 0.0057 22.1 7.3 80 21-131 1-80 (172)
355 TIGR00970 leuA_yeast 2-isoprop 31.8 4.9E+02 0.011 25.2 10.7 100 64-165 44-159 (564)
356 COG3636 Predicted transcriptio 31.4 83 0.0018 22.9 3.6 36 150-187 46-81 (100)
357 PRK00087 4-hydroxy-3-methylbut 31.3 93 0.002 30.6 5.3 71 5-84 46-116 (647)
358 PRK09466 metL bifunctional asp 31.1 3E+02 0.0064 28.0 8.8 50 110-165 608-659 (810)
359 PRK06852 aldolase; Validated 31.0 1.9E+02 0.0041 25.6 6.7 149 14-175 116-301 (304)
360 cd01078 NAD_bind_H4MPT_DH NADP 30.7 37 0.0008 27.4 2.1 42 20-67 92-133 (194)
361 PRK15440 L-rhamnonate dehydrat 30.7 1.1E+02 0.0024 28.0 5.4 66 56-121 209-282 (394)
362 cd03110 Fer4_NifH_child This p 30.7 1.4E+02 0.003 23.4 5.5 28 57-84 147-174 (179)
363 TIGR00736 nifR3_rel_arch TIM-b 30.6 2.8E+02 0.0062 23.4 7.5 43 54-97 66-108 (231)
364 PF08123 DOT1: Histone methyla 30.2 92 0.002 25.8 4.4 47 20-70 117-165 (205)
365 PRK04452 acetyl-CoA decarbonyl 30.2 3.2E+02 0.0069 24.4 8.0 52 102-169 154-205 (319)
366 PF02593 dTMP_synthase: Thymid 30.1 3.1E+02 0.0066 23.1 7.4 67 61-127 56-135 (217)
367 PF13740 ACT_6: ACT domain; PD 29.6 57 0.0012 22.0 2.6 59 63-124 9-67 (76)
368 TIGR03567 FMN_reduc_SsuE FMN r 29.6 2.8E+02 0.0061 21.8 7.9 50 17-69 57-112 (171)
369 PRK13301 putative L-aspartate 29.5 2.3E+02 0.0049 24.6 6.7 64 13-83 49-116 (267)
370 PRK05569 flavodoxin; Provision 29.3 2.5E+02 0.0053 21.1 9.5 85 21-122 44-139 (141)
371 TIGR00629 uvde UV damage endon 28.8 4E+02 0.0088 23.7 8.3 88 69-166 95-214 (312)
372 PF15608 PELOTA_1: PELOTA RNA 28.8 93 0.002 22.7 3.6 65 149-224 18-84 (100)
373 PLN03228 methylthioalkylmalate 28.7 5.2E+02 0.011 24.7 11.4 103 64-166 102-224 (503)
374 PLN02727 NAD kinase 28.5 6E+02 0.013 26.4 10.2 63 57-131 283-350 (986)
375 TIGR02090 LEU1_arch isopropylm 28.1 4.5E+02 0.0098 23.7 10.5 25 64-88 18-42 (363)
376 cd02803 OYE_like_FMN_family Ol 28.0 3.1E+02 0.0066 24.0 7.7 40 48-87 200-247 (327)
377 COG4639 Predicted kinase [Gene 28.0 72 0.0016 25.5 3.1 39 51-89 64-107 (168)
378 cd05294 LDH-like_MDH_nadp A la 27.1 77 0.0017 27.9 3.6 49 17-69 65-128 (309)
379 TIGR01752 flav_long flavodoxin 27.0 2.7E+02 0.0059 21.8 6.5 63 22-87 41-117 (167)
380 PF08765 Mor: Mor transcriptio 26.9 2.5E+02 0.0054 20.4 6.4 62 113-177 35-96 (108)
381 PRK13371 4-hydroxy-3-methylbut 26.9 1.7E+02 0.0036 27.0 5.7 71 5-84 84-160 (387)
382 TIGR02279 PaaC-3OHAcCoADH 3-hy 26.9 4E+02 0.0086 25.4 8.5 68 104-180 383-453 (503)
383 TIGR01928 menC_lowGC/arch o-su 26.6 3.4E+02 0.0075 23.9 7.7 38 53-91 171-209 (324)
384 KOG0068 D-3-phosphoglycerate d 26.4 80 0.0017 28.6 3.5 73 4-79 180-252 (406)
385 PF09999 DUF2240: Uncharacteri 26.1 3.2E+02 0.0069 21.4 6.5 105 57-172 26-142 (144)
386 PRK04885 ppnK inorganic polyph 25.4 1.5E+02 0.0032 25.6 5.0 44 67-120 14-57 (265)
387 PF07755 DUF1611: Protein of u 25.1 1.5E+02 0.0033 26.2 5.0 114 11-130 18-148 (301)
388 COG1832 Predicted CoA-binding 25.0 1.3E+02 0.0027 23.5 3.9 65 11-84 59-123 (140)
389 TIGR00978 asd_EA aspartate-sem 25.0 81 0.0018 28.2 3.4 38 21-65 69-106 (341)
390 PRK13602 putative ribosomal pr 24.9 2E+02 0.0043 20.0 4.7 34 55-88 27-60 (82)
391 cd02931 ER_like_FMN Enoate red 24.9 4.9E+02 0.011 23.7 8.5 102 65-175 249-350 (382)
392 PRK00377 cbiT cobalt-precorrin 24.7 1.3E+02 0.0027 24.4 4.3 54 24-82 110-163 (198)
393 PRK00208 thiG thiazole synthas 24.6 4.5E+02 0.0098 22.6 8.0 75 54-143 121-195 (250)
394 cd04885 ACT_ThrD-I Tandem C-te 24.5 1E+02 0.0023 20.1 3.1 33 54-86 36-68 (68)
395 TIGR01465 cobM_cbiF precorrin- 24.4 4E+02 0.0087 21.9 8.7 23 100-122 73-95 (229)
396 TIGR01763 MalateDH_bact malate 24.3 70 0.0015 28.2 2.8 20 15-35 60-79 (305)
397 TIGR00518 alaDH alanine dehydr 24.2 37 0.0008 30.8 1.0 15 19-33 224-238 (370)
398 PF11113 Phage_head_chap: Head 24.1 92 0.002 20.2 2.5 26 54-79 25-50 (56)
399 PF08671 SinI: Anti-repressor 24.0 1.4E+02 0.0031 16.6 3.4 23 154-176 6-28 (30)
400 PRK08268 3-hydroxy-acyl-CoA de 23.9 5E+02 0.011 24.7 8.7 65 107-180 389-454 (507)
401 PRK05452 anaerobic nitric oxid 23.8 5.7E+02 0.012 24.1 8.9 98 18-132 294-401 (479)
402 cd01838 Isoamyl_acetate_hydrol 23.7 1.5E+02 0.0032 23.3 4.5 11 25-35 63-73 (199)
403 PRK06598 aspartate-semialdehyd 23.6 74 0.0016 29.0 2.8 37 21-64 61-99 (369)
404 PRK08300 acetaldehyde dehydrog 23.3 1.2E+02 0.0026 26.9 4.0 49 11-66 50-104 (302)
405 PF03358 FMN_red: NADPH-depend 23.1 1.7E+02 0.0037 22.2 4.5 67 20-89 65-144 (152)
406 cd00650 LDH_MDH_like NAD-depen 23.0 1.4E+02 0.0031 25.4 4.4 60 13-77 58-132 (263)
407 PRK11921 metallo-beta-lactamas 22.9 5.8E+02 0.012 23.2 9.5 91 18-123 290-390 (394)
408 COG2185 Sbm Methylmalonyl-CoA 22.8 3.1E+02 0.0068 21.4 5.8 64 72-135 31-106 (143)
409 PF01262 AlaDh_PNT_C: Alanine 22.6 27 0.00059 27.7 -0.1 43 18-63 95-139 (168)
410 TIGR03450 mycothiol_INO1 inosi 22.4 1.2E+02 0.0025 27.5 3.7 21 206-226 304-324 (351)
411 PF06576 DUF1133: Protein of u 22.4 3E+02 0.0065 22.2 5.7 58 115-176 24-83 (176)
412 PF02317 Octopine_DH: NAD/NADP 22.3 1.3E+02 0.0028 23.4 3.7 28 209-236 122-149 (152)
413 cd00308 enolase_like Enolase-s 22.2 4.5E+02 0.0097 21.6 8.5 37 55-91 94-131 (229)
414 PF12637 TSCPD: TSCPD domain; 22.1 2.1E+02 0.0046 20.4 4.5 32 147-178 37-68 (95)
415 COG1712 Predicted dinucleotide 22.0 3.9E+02 0.0084 22.9 6.5 71 10-88 45-118 (255)
416 KOG4518 Hydroxypyruvate isomer 21.9 4.1E+02 0.0088 22.2 6.5 80 139-223 4-102 (264)
417 COG3607 Predicted lactoylgluta 21.6 2.8E+02 0.006 21.3 5.1 77 8-86 21-101 (133)
418 PRK12548 shikimate 5-dehydroge 21.5 81 0.0018 27.5 2.6 62 21-87 195-258 (289)
419 cd00300 LDH_like L-lactate deh 21.5 2E+02 0.0043 25.2 5.1 17 20-36 61-77 (300)
420 PF04472 DUF552: Protein of un 21.4 2.5E+02 0.0053 18.8 4.5 43 31-79 4-46 (73)
421 PRK09620 hypothetical protein; 21.4 3E+02 0.0064 23.1 5.9 74 54-129 18-94 (229)
422 PRK15063 isocitrate lyase; Pro 21.4 2.4E+02 0.0052 26.3 5.6 65 25-93 277-351 (428)
423 PRK04761 ppnK inorganic polyph 21.1 2.7E+02 0.0058 23.8 5.6 47 63-120 1-47 (246)
424 cd03317 NAAAR N-acylamino acid 21.0 5.6E+02 0.012 22.7 8.1 66 55-121 178-249 (354)
425 PF06189 5-nucleotidase: 5'-nu 21.0 2.3E+02 0.005 24.5 5.1 55 58-112 38-95 (264)
426 TIGR03215 ac_ald_DH_ac acetald 20.7 1.3E+02 0.0029 26.3 3.8 49 11-66 47-98 (285)
427 COG0796 MurI Glutamate racemas 20.4 4.8E+02 0.01 22.7 7.0 84 25-125 177-260 (269)
428 PLN00203 glutamyl-tRNA reducta 20.4 80 0.0017 30.2 2.5 23 16-38 320-342 (519)
429 PF06434 Aconitase_2_N: Aconit 20.4 47 0.001 27.3 0.8 36 112-148 43-79 (204)
430 COG1004 Ugd Predicted UDP-gluc 20.1 1.2E+02 0.0026 28.0 3.4 44 13-62 364-407 (414)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=8.8e-64 Score=429.45 Aligned_cols=250 Identities=36% Similarity=0.567 Sum_probs=245.1
Q ss_pred chhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 5 NNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
.+.+++.|++.+.||+|+++.+|+||+||+|+++|++|++|++++++++.+|++||||||++|++++++++.++++|.+|
T Consensus 37 ~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~ 116 (286)
T COG2084 37 AELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEF 116 (286)
T ss_pred hHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcE
Confidence 34577789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025140 85 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG 164 (257)
Q Consensus 85 vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 164 (257)
+|+||+|++..+++|+|+||+||++++|++++|+|+.++++++|+|+.|+|+.+|++||++.++++++++|++.|+++.|
T Consensus 117 lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G 196 (286)
T COG2084 117 LDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG 196 (286)
T ss_pred EecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCCCCCc
Q 025140 165 LDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDE 244 (257)
Q Consensus 165 ld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~ 244 (257)
+|++.++++++.+++.||+++++.|+|++++|.|+|+++++.||++++++++++.|+++|+...+.++|+.+.+.|+|++
T Consensus 197 ld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~ 276 (286)
T COG2084 197 LDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEE 276 (286)
T ss_pred CCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHH
Q 025140 245 DFSAVIEALK 254 (257)
Q Consensus 245 d~~a~~~~~~ 254 (257)
|++++++.++
T Consensus 277 D~sal~~~l~ 286 (286)
T COG2084 277 DFSALIKLLE 286 (286)
T ss_pred ChHHHHHHhC
Confidence 9999999874
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=8e-61 Score=404.58 Aligned_cols=255 Identities=41% Similarity=0.644 Sum_probs=249.5
Q ss_pred CcchhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEE-EEcCCCCHHHHHHHHHHHHHcC
Q 025140 3 TPNNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATG 81 (257)
Q Consensus 3 ~~~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~i-vd~ST~~p~~~~~la~~~~~~G 81 (257)
..+++|++.|+++++||.|++++||+||+||||+.++++|++|..|+++++++|+.. ||+||++|+++++|++.++.+|
T Consensus 69 ~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~ 148 (327)
T KOG0409|consen 69 DKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG 148 (327)
T ss_pred HHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC
Confidence 456899999999999999999999999999999999999999999999999999888 9999999999999999999999
Q ss_pred CcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 82 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE 161 (257)
Q Consensus 82 ~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~ 161 (257)
++|+||||+|+..+|++|+|+||+|||++.|+++.|+|+.++++++|+|..|+|+.+|+|||++++.++.+++|++.|++
T Consensus 149 ~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~ 228 (327)
T KOG0409|consen 149 GRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALAD 228 (327)
T ss_pred CeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCCC
Q 025140 162 KVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGL 241 (257)
Q Consensus 162 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 241 (257)
+.|+|+.+++|+++.+.++||++.++.|.|++++|.|+|.++++.||++++.+.+.+.+.|+|+...+.|+|..+.+.|+
T Consensus 229 r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~ 308 (327)
T KOG0409|consen 229 RLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGY 308 (327)
T ss_pred HcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHhCC
Q 025140 242 SDEDFSAVIEALKAKK 257 (257)
Q Consensus 242 g~~d~~a~~~~~~~~~ 257 (257)
|+.|++++|+.++.+|
T Consensus 309 g~~Dfs~V~~~~~~~~ 324 (327)
T KOG0409|consen 309 GDKDFSAVYRAFRRLN 324 (327)
T ss_pred CccccHHHHHHHHHhc
Confidence 9999999998888654
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=7.4e-56 Score=387.48 Aligned_cols=251 Identities=27% Similarity=0.473 Sum_probs=243.3
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
+++.+.|++.++|+.|++++||+||+|||+++++++|+++++++.+.+.+|++|||+||++|+++++++++++++|++|+
T Consensus 36 ~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~v 115 (292)
T PRK15059 36 DELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYL 115 (292)
T ss_pred HHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 55778899999999999999999999999999999999988888888889999999999999999999999999999999
Q ss_pred EecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 86 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 86 dapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
|+||+|++..++.|++++|+||+++++++++|+|+.++++++|+|+.|+|+.+||+||++.+.++++++|++.+++++|+
T Consensus 116 daPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gl 195 (292)
T PRK15059 116 DAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGA 195 (292)
T ss_pred EecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCCCCCcc
Q 025140 166 DPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDED 245 (257)
Q Consensus 166 d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 245 (257)
|++.++++++.+.+.||+++.+.|++.+++|+++|+++++.||++++++++++.|+++|+.+.+.++|+.+.+.|+|++|
T Consensus 196 d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D 275 (292)
T PRK15059 196 DPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLD 275 (292)
T ss_pred CHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhC
Q 025140 246 FSAVIEALKAK 256 (257)
Q Consensus 246 ~~a~~~~~~~~ 256 (257)
++++++++++.
T Consensus 276 ~sa~~~~~~~~ 286 (292)
T PRK15059 276 HSALVQALELM 286 (292)
T ss_pred hHHHHHHHHHh
Confidence 99999998863
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-52 Score=368.48 Aligned_cols=251 Identities=25% Similarity=0.408 Sum_probs=240.3
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
+++.+.|++.+.|+.|++++||+||+|||++.++++|+++.+++.+.+.+|+++||+||++|.+++++++++.++|++|+
T Consensus 38 ~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 38 DALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred HHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 56778899999999999999999999999999999999888888888889999999999999999999999999999999
Q ss_pred EecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 86 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 86 dapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
|+||+|++..++.|++++|+||+++++++++|+|+.|+++++|+|+.|+|+++|+++|++...++++++|++.+++++|+
T Consensus 118 dapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gl 197 (296)
T PRK15461 118 DVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGL 197 (296)
T ss_pred EccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCchhhhcccc-ccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCCCCCc
Q 025140 166 DPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDE 244 (257)
Q Consensus 166 d~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~ 244 (257)
|++.++++++.++..++.+..+.+ ++.+++|+++|+++++.||++++++++++.|+++|+++.+.++|+.+.+.|+|++
T Consensus 198 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~ 277 (296)
T PRK15461 198 SFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQ 277 (296)
T ss_pred CHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCC
Confidence 999999999998777888877765 8999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhC
Q 025140 245 DFSAVIEALKAK 256 (257)
Q Consensus 245 d~~a~~~~~~~~ 256 (257)
|++++++++++.
T Consensus 278 d~~~~~~~~~~~ 289 (296)
T PRK15461 278 DWSAILEQVRVS 289 (296)
T ss_pred ChHHHHHHHHHh
Confidence 999999998763
No 5
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=5e-52 Score=363.26 Aligned_cols=250 Identities=31% Similarity=0.451 Sum_probs=237.8
Q ss_pred chhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 5 NNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
.+.+.+.|++.++|+.|++++||+||+|||++.+++++++|++++.+.+.+|++|||+||++|+++++++++++++|++|
T Consensus 32 ~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~ 111 (288)
T TIGR01692 32 VEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVF 111 (288)
T ss_pred HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 35678889999999999999999999999999999999998888988889999999999999999999999999999999
Q ss_pred EEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025140 85 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG 164 (257)
Q Consensus 85 vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 164 (257)
+|+||+|++..++.|++++|+||+++.+++++|+|+.++++++|+|+.|+|+++|+++|++.+.++++++|++.+++++|
T Consensus 112 vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 191 (288)
T TIGR01692 112 MDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG 191 (288)
T ss_pred EECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCchhhhcccc-------ccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 025140 165 LDPNVLVEVVSQGAISAPMYSLKGP-------SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 237 (257)
Q Consensus 165 ld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 237 (257)
+|++.++++++.+.+.||++..+.+ .+.+++|+++|++.++.||++++.+++++.|+|+|+++.+.++|+.+.
T Consensus 192 ld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 271 (288)
T TIGR01692 192 LDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFD 271 (288)
T ss_pred CCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 9999999999999888888876655 246789999999999999999999999999999999999999999999
Q ss_pred HCCCCCcchHHHHHHHH
Q 025140 238 SHGLSDEDFSAVIEALK 254 (257)
Q Consensus 238 ~~g~g~~d~~a~~~~~~ 254 (257)
+.|+|++|+++++++++
T Consensus 272 ~~g~g~~d~~~~~~~~~ 288 (288)
T TIGR01692 272 DKGHGGKDFSSVIQLLR 288 (288)
T ss_pred hcCCCCCChHHHHHHhC
Confidence 99999999999999763
No 6
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=6.1e-51 Score=412.76 Aligned_cols=253 Identities=20% Similarity=0.300 Sum_probs=245.4
Q ss_pred cchhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcC--
Q 025140 4 PNNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG-- 81 (257)
Q Consensus 4 ~~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G-- 81 (257)
.+++|++.|++.++||+|++++||+||+|||+++++++|++|++++++++.+|++||||||++|++++++++.++++|
T Consensus 39 ~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~ 118 (1378)
T PLN02858 39 LMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQ 118 (1378)
T ss_pred HHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCc
Confidence 346799999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred CcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceec-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 82 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHS 160 (257)
Q Consensus 82 ~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~-G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la 160 (257)
+.|+||||+|++..++.|+|++|+||+++++++++|+|+.||++++|+ |+.|+|+.+||+||++.++++++++|++.++
T Consensus 119 ~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la 198 (1378)
T PLN02858 119 IFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALG 198 (1378)
T ss_pred eEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998875 8899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCC
Q 025140 161 EKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 240 (257)
Q Consensus 161 ~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 240 (257)
+++|+|++.++++|+.+++.||+++.+.|++++++|.++|+++++.||++++++++++.|+++|+++.+.++|+.+.+.|
T Consensus 199 ~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G 278 (1378)
T PLN02858 199 VRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSM 278 (1378)
T ss_pred HHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHhC
Q 025140 241 LSDEDFSAVIEALKAK 256 (257)
Q Consensus 241 ~g~~d~~a~~~~~~~~ 256 (257)
+|++|++++++++++.
T Consensus 279 ~g~~D~sav~~~~~~~ 294 (1378)
T PLN02858 279 QGDDTATSLAKVWEKV 294 (1378)
T ss_pred CCccChHHHHHHHHHH
Confidence 9999999999999763
No 7
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.1e-47 Score=336.31 Aligned_cols=251 Identities=29% Similarity=0.512 Sum_probs=241.2
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
+.+.+.|+..++|+.+++++||+||+|+|++.++++++++.+++.+.+.+|++|||+||++|.+++++.+.++++|++|+
T Consensus 36 ~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~ 115 (291)
T TIGR01505 36 DELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYL 115 (291)
T ss_pred HHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 56778899999999999999999999999999999999877778788889999999999999999999999999999999
Q ss_pred EecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 86 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 86 dapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
|+||+|++..+..|++.+|+||+++++++++++|+.++.+++|+|+.|.|+.+|+++|++...++.+++|++.+++++|+
T Consensus 116 ~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi 195 (291)
T TIGR01505 116 DAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGV 195 (291)
T ss_pred ecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCCCCCcc
Q 025140 166 DPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDED 245 (257)
Q Consensus 166 d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 245 (257)
|++.+.++++.+.+.|++++.+.+++.+++|.++|+++++.||++++++++++.|+++|+++.+.++|+.+.+.|+|++|
T Consensus 196 d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d 275 (291)
T TIGR01505 196 DPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLD 275 (291)
T ss_pred CHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccC
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhC
Q 025140 246 FSAVIEALKAK 256 (257)
Q Consensus 246 ~~a~~~~~~~~ 256 (257)
++++++++++.
T Consensus 276 ~~~~~~~~~~~ 286 (291)
T TIGR01505 276 HSALVQALELL 286 (291)
T ss_pred hHHHHHHHHHh
Confidence 99999999763
No 8
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=3.1e-48 Score=393.09 Aligned_cols=251 Identities=24% Similarity=0.353 Sum_probs=242.7
Q ss_pred chhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHH--cCC
Q 025140 5 NNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGA 82 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~--~G~ 82 (257)
.+.|.+.|+..++|+.+++++||+||+|||+++++++|++|..++++++.+|++|||+||++|++++++++++++ +|+
T Consensus 360 ~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~ 439 (1378)
T PLN02858 360 LVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDI 439 (1378)
T ss_pred HHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCc
Confidence 456888999999999999999999999999999999999998889988899999999999999999999999999 999
Q ss_pred cEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceec-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 83 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE 161 (257)
Q Consensus 83 ~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~-G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~ 161 (257)
+|+|+||+|+|..++.|+|++|+||++++|++++|+|+.|+++++|+ |++|+|+++||+||++.+.++++++|++.+++
T Consensus 440 ~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~ 519 (1378)
T PLN02858 440 KLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGA 519 (1378)
T ss_pred EEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999885 56999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCCC
Q 025140 162 KVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGL 241 (257)
Q Consensus 162 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 241 (257)
++|+|++.++++++.+++.||+++.+.|++++++|+++|+++++.||++++++++++.|+|+|+++.+.++|+.+.+.|+
T Consensus 520 k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~ 599 (1378)
T PLN02858 520 RLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGW 599 (1378)
T ss_pred HcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHh
Q 025140 242 SDEDFSAVIEALKA 255 (257)
Q Consensus 242 g~~d~~a~~~~~~~ 255 (257)
|++|++++++++++
T Consensus 600 g~~D~sav~~~~~~ 613 (1378)
T PLN02858 600 GRIDDAAVVKVYET 613 (1378)
T ss_pred CccChHHHHHHHHH
Confidence 99999999999875
No 9
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.9e-47 Score=335.52 Aligned_cols=251 Identities=28% Similarity=0.468 Sum_probs=241.0
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
+.+.+.|++.++++.|++++||+||+|+|++.++++++++.+++.+.+.+|++|||+||++|.+++++++.++++|++|+
T Consensus 39 ~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~ 118 (296)
T PRK11559 39 AEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEML 118 (296)
T ss_pred HHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 45777899999999999999999999999999999999887778888889999999999999999999999999999999
Q ss_pred EecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 86 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 86 dapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
|+||+|+++.+..|++.+|+||+++++++++++|+.++.+++|+|+.|+|+.+|+++|++.++++++++|++.++++.|+
T Consensus 119 d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi 198 (296)
T PRK11559 119 DAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGV 198 (296)
T ss_pred EcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCCCCCcc
Q 025140 166 DPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDED 245 (257)
Q Consensus 166 d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 245 (257)
|++++.+++..+.+.|++++.+.|++.+++|.++|+++++.||++++++++++.|+++|+++.+.++|+.+.+.|+|++|
T Consensus 199 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d 278 (296)
T PRK11559 199 NPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTAD 278 (296)
T ss_pred CHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCC
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhC
Q 025140 246 FSAVIEALKAK 256 (257)
Q Consensus 246 ~~a~~~~~~~~ 256 (257)
++++++++++.
T Consensus 279 ~~~~~~~~~~~ 289 (296)
T PRK11559 279 HSALACYYEKL 289 (296)
T ss_pred cHHHHHHHHHh
Confidence 99999998753
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=9.9e-44 Score=312.35 Aligned_cols=244 Identities=19% Similarity=0.235 Sum_probs=226.3
Q ss_pred hhhhhcCccccCCHHHHHhc---CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 6 NAFYYSRCRYQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~---advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
+++.+.|++.++|+.|++++ +|+||+|+|+++++++++ +++.+.+.+|++|||+||++|.++++++++++++|+
T Consensus 37 ~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~---~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~ 113 (299)
T PRK12490 37 DVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI---KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGI 113 (299)
T ss_pred HHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCC
Confidence 56778899999999999876 699999999999999998 577778889999999999999999999999999999
Q ss_pred cEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcC---CceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 83 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK---SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLH 159 (257)
Q Consensus 83 ~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~---~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~l 159 (257)
+|+|+||+|++..++.|+ ++|+||++++|++++|+|+.++. +++|+|++|+|+.+|+++|++.++++++++|++.+
T Consensus 114 ~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l 192 (299)
T PRK12490 114 HYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLEL 192 (299)
T ss_pred eEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 89999999999999999999997 78999999999999999999999999999999999
Q ss_pred HHHcC--CCHHHHHHHHhhc-CCCchhhhccccccccCCCCCCCchhhHHHHH---HHHHHHHHhcCCCcHHHHHHH-HH
Q 025140 160 SEKVG--LDPNVLVEVVSQG-AISAPMYSLKGPSMIESLYPTAFPLKHQQKDL---RLALGLAESVSQSTPIAAAAN-EL 232 (257)
Q Consensus 160 a~~~G--ld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~---~~~~~~a~~~g~~~p~~~~~~-~~ 232 (257)
+++.| +|++.++++++.+ .+.|++++.+.+.+..+++ .|.++.+.||+ +++++.+++.|+|+|++..+. .+
T Consensus 193 ~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~ 270 (299)
T PRK12490 193 LDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMR 270 (299)
T ss_pred HHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999 9999999999964 4899999999998876543 36789999998 899999999999999999995 99
Q ss_pred HHHHHHCCCCCcchHHHHHHHHh
Q 025140 233 YKVAKSHGLSDEDFSAVIEALKA 255 (257)
Q Consensus 233 ~~~a~~~g~g~~d~~a~~~~~~~ 255 (257)
|....+.|.|+.|++++.+++-.
T Consensus 271 ~~~~~~~~~~~~~~~a~~~~f~~ 293 (299)
T PRK12490 271 FASQEDDSFHMKVVSALRNQFGG 293 (299)
T ss_pred HHhCccCChHHHHHHHHHHhhCC
Confidence 99999999999999999988753
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=4.1e-43 Score=323.57 Aligned_cols=228 Identities=17% Similarity=0.186 Sum_probs=211.4
Q ss_pred hhhhhc----Ccc---ccCCHHHHHhc---CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHH
Q 025140 6 NAFYYS----RCR---YQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING 75 (257)
Q Consensus 6 ~~~~~~----Ga~---~~~s~~ea~~~---advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~ 75 (257)
++|++. |++ .++|++|+++. +|+||+|||+++++++|+ +++++.+.+|++|||+||++|++++++++
T Consensus 43 ~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~ 119 (493)
T PLN02350 43 DETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIK 119 (493)
T ss_pred HHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHH
Confidence 567764 765 78999999987 999999999999999999 68888999999999999999999999999
Q ss_pred HHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCC------ceecCCCchHHHHHHHHHHHHHHH
Q 025140 76 HIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS------RFYLGDVGNGAAMKLVVNMIMGSM 149 (257)
Q Consensus 76 ~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~------~~~~G~~G~a~~~Kl~~n~~~~~~ 149 (257)
+++++|++|+|+||+||+.+|+.|+ ++|+||++++|++++|+|+.++.+ ++|+|+.|+|+.+||++|.+.+++
T Consensus 120 ~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~ 198 (493)
T PLN02350 120 EAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGD 198 (493)
T ss_pred HHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999954 999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCCchhhhccccccccCC-CCCCCchhhHHHHHH------HHHHHHHh
Q 025140 150 MATFSEGLLHSEK-VGLDPNVLVEV---VSQGAISAPMYSLKGPSMIESL-YPTAFPLKHQQKDLR------LALGLAES 218 (257)
Q Consensus 150 ~~~~~Ea~~la~~-~Gld~~~~~~~---l~~~~~~s~~~~~~~~~~~~~~-~~~~f~~~~~~KD~~------~~~~~a~~ 218 (257)
+++++|++.++++ .|+|++.+.++ ++.+.+.|++++.+.+.+..++ |.++|.++.+.||++ +..+.+.+
T Consensus 199 m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~ 278 (493)
T PLN02350 199 MQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAE 278 (493)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHH
Confidence 9999999999999 59999999999 5677889999999999887775 888999999999999 89999999
Q ss_pred cCCCcHH-HHHHHHHHHHHH
Q 025140 219 VSQSTPI-AAAANELYKVAK 237 (257)
Q Consensus 219 ~g~~~p~-~~~~~~~~~~a~ 237 (257)
.|+|+|+ .+++.++|....
T Consensus 279 lgv~~p~i~~av~~r~~s~~ 298 (493)
T PLN02350 279 LSVAAPTIAASLDARYLSGL 298 (493)
T ss_pred hCCCccHHHHHHHHHHHhcc
Confidence 9999999 777887777654
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=6.4e-41 Score=294.85 Aligned_cols=244 Identities=21% Similarity=0.249 Sum_probs=220.0
Q ss_pred chhhhhcCccccCCHHHHHhc---CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcC
Q 025140 5 NNAFYYSRCRYQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 81 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~---advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G 81 (257)
.+++.+.|++.++|+.|+++. +|+||+|+|+++++++|+ +++.+.+.+|+++||+||++|.+++++++.++++|
T Consensus 36 ~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~---~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g 112 (301)
T PRK09599 36 VEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI---DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG 112 (301)
T ss_pred HHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC
Confidence 356888899999999999986 699999999999999998 57777888999999999999999999999999999
Q ss_pred CcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcC----CceecCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 82 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK----SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 157 (257)
Q Consensus 82 ~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~----~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~ 157 (257)
++|+|+||+|++..++.|. ++|+||++++|++++|+|+.++. +++|+|+.|+|+.+|+++|.+.++++.+++|++
T Consensus 113 ~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~ 191 (301)
T PRK09599 113 IHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGF 191 (301)
T ss_pred CEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999995 99999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHH--cCCCHHHHHHHHhhcC-CCchhhhccccccccCCCCCCCc-hhhHHHH---HHHHHHHHHhcCCCcHHHHHHH
Q 025140 158 LHSEK--VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAFP-LKHQQKD---LRLALGLAESVSQSTPIAAAAN 230 (257)
Q Consensus 158 ~la~~--~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~f~-~~~~~KD---~~~~~~~a~~~g~~~p~~~~~~ 230 (257)
.++++ .|+|++.++++++.+. +.|++++.+.+.+.. + +.|+ +..+.|| ++++++.+.+.|+|+|++..+.
T Consensus 192 ~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~--~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~ 268 (301)
T PRK09599 192 ELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAE-D--PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAAL 268 (301)
T ss_pred HHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhc-C--CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999 9999999999999875 699999988887744 3 3343 4445666 5899999999999999999955
Q ss_pred H-HHHHHHHCCCCCcchHHHHHHHHh
Q 025140 231 E-LYKVAKSHGLSDEDFSAVIEALKA 255 (257)
Q Consensus 231 ~-~~~~a~~~g~g~~d~~a~~~~~~~ 255 (257)
. .|....+.|+|+.|.+++.+++-.
T Consensus 269 ~~~~~~~~~~~~~~~~~~a~~~~fg~ 294 (301)
T PRK09599 269 FMRFRSRQEDSFADKVVAALRNGFGG 294 (301)
T ss_pred HHHHHhccCCCcHHHHHHHHHHhcCC
Confidence 4 589999999999999999988753
No 13
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=2e-37 Score=284.45 Aligned_cols=221 Identities=19% Similarity=0.224 Sum_probs=196.6
Q ss_pred chhhhhc-----CccccCCHHHHHhc---CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHH
Q 025140 5 NNAFYYS-----RCRYQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH 76 (257)
Q Consensus 5 ~~~~~~~-----Ga~~~~s~~ea~~~---advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~ 76 (257)
+++|++. |++.++|++|+++. +|+||+|||+++++++|+ +++++.+.+|++|||+||+.|..+++++++
T Consensus 26 ~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~~l~~GdiiID~gn~~~~~t~~~~~~ 102 (459)
T PRK09287 26 TDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLPLLEKGDIIIDGGNSNYKDTIRREKE 102 (459)
T ss_pred HHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHH
Confidence 3667774 58999999999985 899999999999999999 688999999999999999999999999999
Q ss_pred HHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCc-------eecCCCchHHHHHHHHHHHHHHH
Q 025140 77 IKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGDVGNGAAMKLVVNMIMGSM 149 (257)
Q Consensus 77 ~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~-------~~~G~~G~a~~~Kl~~n~~~~~~ 149 (257)
++++|++|||+||+||+.+|+.|. ++|+||++++|++++|+|+.++.++ +|+|+.|+|+.+||++|.+.+++
T Consensus 103 l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~ 181 (459)
T PRK09287 103 LAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGD 181 (459)
T ss_pred HHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 9999999999999999999999987 99999999999999999999999
Q ss_pred HHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCchhhhccccccccCCCCCCCc-hhhH-----HH-HHHHHHHHHHh
Q 025140 150 MATFSEGLLHSE-KVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESLYPTAFP-LKHQ-----QK-DLRLALGLAES 218 (257)
Q Consensus 150 ~~~~~Ea~~la~-~~Gld~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~~f~-~~~~-----~K-D~~~~~~~a~~ 218 (257)
+++++|++.+++ +.|+|++.+.+++ +.+...||+++.+.+.+..+|+..+.. ++.. .| .-+.....|-+
T Consensus 182 mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~ 261 (459)
T PRK09287 182 MQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALD 261 (459)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHH
Confidence 999999999999 5999999999999 577789999999999998888854432 2221 11 13356778889
Q ss_pred cCCCcHHHHHH
Q 025140 219 VSQSTPIAAAA 229 (257)
Q Consensus 219 ~g~~~p~~~~~ 229 (257)
.|+|.|++..+
T Consensus 262 ~~v~~~~i~~A 272 (459)
T PRK09287 262 LGVPLTLITEA 272 (459)
T ss_pred hCCChHHHHHH
Confidence 99999987653
No 14
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=1.5e-34 Score=254.04 Aligned_cols=221 Identities=21% Similarity=0.230 Sum_probs=200.0
Q ss_pred chhhhhcCccccCCHHHHHh---cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcC
Q 025140 5 NNAFYYSRCRYQPSPDEVAA---SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 81 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~---~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G 81 (257)
.+.+.+.|+..+.++.++++ ++|+||+|+|++ ++++|+ +++.+.+.+|++|||+||+.|..++++.++++++|
T Consensus 36 ~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~---~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g 111 (298)
T TIGR00872 36 VKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL---EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG 111 (298)
T ss_pred HHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC
Confidence 35688889888899988764 579999999998 999999 67888888999999999999999999999999999
Q ss_pred CcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcC---CceecCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 82 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK---SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLL 158 (257)
Q Consensus 82 ~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~---~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~ 158 (257)
++|+|+||+|++..++.| +++|+||+++++++++|+|+.++. +++|+|+.|+|+.+|+++|.+.++.+++++|++.
T Consensus 112 ~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~ 190 (298)
T TIGR00872 112 IHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFE 190 (298)
T ss_pred CeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 699999999999999999999986 5899999999999999999999999999999999
Q ss_pred HHHHc--CCCHHHHHHHHhhcC-CCchhhhccccccccCCCCCCCchh-hHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 025140 159 HSEKV--GLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAFPLK-HQQKDLRLALGLAESVSQSTPIAAAAN 230 (257)
Q Consensus 159 la~~~--Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~f~~~-~~~KD~~~~~~~a~~~g~~~p~~~~~~ 230 (257)
++++. |+|++++.++++.+. ..||+++.+.+.+..+++.+.|... ...+|.+.++..+.+.|+|+|.+..+.
T Consensus 191 l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al 266 (298)
T TIGR00872 191 ILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL 266 (298)
T ss_pred HHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH
Confidence 99998 579999999999986 6999999988877776665566544 467889999999999999999999954
No 15
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-33 Score=258.49 Aligned_cols=220 Identities=16% Similarity=0.166 Sum_probs=187.5
Q ss_pred hhhhhc----C--ccccCCHHHHHh---cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHH
Q 025140 6 NAFYYS----R--CRYQPSPDEVAA---SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH 76 (257)
Q Consensus 6 ~~~~~~----G--a~~~~s~~ea~~---~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~ 76 (257)
++|.+. | .+.++|++|+++ ++|+||+||++++++++|+ +++.+.+.+|++|||+||+.|..++++.++
T Consensus 38 ~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~ 114 (470)
T PTZ00142 38 EEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKR 114 (470)
T ss_pred HHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHH
Confidence 456553 6 346899999997 4899999999999999999 678888999999999999999999999999
Q ss_pred HHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCC------ceecCCCchHHHHHHHHHHHHHHHH
Q 025140 77 IKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS------RFYLGDVGNGAAMKLVVNMIMGSMM 150 (257)
Q Consensus 77 ~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~------~~~~G~~G~a~~~Kl~~n~~~~~~~ 150 (257)
++++|++|+|+||+||+.+|+.|+ ++|+||++++|++++|+|+.++.+ ++|+|+.|+|+.+||++|.+.++++
T Consensus 115 l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m 193 (470)
T PTZ00142 115 CEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDM 193 (470)
T ss_pred HHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999 899999999999999999999988 8999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHh---hcCCCchhhhccccccccCCCCC-CCchhhH------HHHHHHHHHHHHhc
Q 025140 151 ATFSEGLLHSE-KVGLDPNVLVEVVS---QGAISAPMYSLKGPSMIESLYPT-AFPLKHQ------QKDLRLALGLAESV 219 (257)
Q Consensus 151 ~~~~Ea~~la~-~~Gld~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~-~f~~~~~------~KD~~~~~~~a~~~ 219 (257)
++++|++.+++ +.|+|++++.+++. .+...||+++.....+...|-.. .+-++.. .-.-+...+.|-+.
T Consensus 194 ~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~ 273 (470)
T PTZ00142 194 QLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALER 273 (470)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHhhcccccCCCcchhhhcCcccCCchHHhHHHHHHHc
Confidence 99999999998 79999999999984 66788998887665554443211 1222211 11234567888899
Q ss_pred CCCcHHHHHH
Q 025140 220 SQSTPIAAAA 229 (257)
Q Consensus 220 g~~~p~~~~~ 229 (257)
|+|.|++..+
T Consensus 274 ~v~~p~i~~a 283 (470)
T PTZ00142 274 GIPVPTMAAS 283 (470)
T ss_pred CCCchHHHHH
Confidence 9999998665
No 16
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=3.2e-33 Score=257.59 Aligned_cols=220 Identities=16% Similarity=0.164 Sum_probs=188.4
Q ss_pred hhhhhc-----CccccCCHHHHHh---cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHH
Q 025140 6 NAFYYS-----RCRYQPSPDEVAA---SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI 77 (257)
Q Consensus 6 ~~~~~~-----Ga~~~~s~~ea~~---~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~ 77 (257)
++|.+. ++..+++++|+++ .+|+||+|||+++++++|+ +++.+.+.+|++|||+||+.|..++++++.+
T Consensus 36 ~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l 112 (467)
T TIGR00873 36 DEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI---NQLLPLLEKGDIIIDGGNSHYPDTERRYKEL 112 (467)
T ss_pred HHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHH
Confidence 456655 3667889999885 5899999999999999999 6788888999999999999999999999999
Q ss_pred HHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCC------ceecCCCchHHHHHHHHHHHHHHHHH
Q 025140 78 KATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS------RFYLGDVGNGAAMKLVVNMIMGSMMA 151 (257)
Q Consensus 78 ~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~------~~~~G~~G~a~~~Kl~~n~~~~~~~~ 151 (257)
+++|++|+|+||+||+.+|+.|. ++|+||++++|++++|+|+.++.+ ++|+|+.|+|+.+||++|.+.+++++
T Consensus 113 ~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~ 191 (467)
T TIGR00873 113 KAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQ 191 (467)
T ss_pred HhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 999999999999999999999987 48999999999999999999999999
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCchhhhccccccccCCCCCCCchhhH------HHHHHHHHHHHHhcCC
Q 025140 152 TFSEGLLHSE-KVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESLYPTAFPLKHQ------QKDLRLALGLAESVSQ 221 (257)
Q Consensus 152 ~~~Ea~~la~-~~Gld~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~------~KD~~~~~~~a~~~g~ 221 (257)
+++|++.+++ +.|+|++++.+++ +.+...||+++...+.+..+|-...+=++.. .-.-+.....|-+.|+
T Consensus 192 ~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v 271 (467)
T TIGR00873 192 LICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGV 271 (467)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHhccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCC
Confidence 9999999985 7999999999999 5677899999988887766553211112211 1123456788889999
Q ss_pred CcHHHHHH
Q 025140 222 STPIAAAA 229 (257)
Q Consensus 222 ~~p~~~~~ 229 (257)
|.|++..+
T Consensus 272 ~~p~i~~a 279 (467)
T TIGR00873 272 PVTLITES 279 (467)
T ss_pred CchHHHHH
Confidence 99987664
No 17
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.98 E-value=2.9e-31 Score=242.87 Aligned_cols=212 Identities=16% Similarity=0.115 Sum_probs=187.9
Q ss_pred cC-ccccCCHHHHHhcCCEEEEecCChHH---------HHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHc
Q 025140 11 SR-CRYQPSPDEVAASCDVTFAMLADPES---------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT 80 (257)
Q Consensus 11 ~G-a~~~~s~~ea~~~advvi~~l~~~~~---------v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~ 80 (257)
.| .+.++++.+++++||+||+|||++.+ +.+++ +++.+.+.+|++||++||++|.+++++.+.+.++
T Consensus 61 ~g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 61 AGRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred cCCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 35 67788999999999999999999853 66666 6777888899999999999999999998766555
Q ss_pred --CCc-EEEecCCCChHHhhcCce--------EEEecCChhHHHHHHHHHHHhc-CCceecCCCchHHHHHHHHHHHHHH
Q 025140 81 --GAS-FLEAPVSGSKKPAEDGQL--------IFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGS 148 (257)
Q Consensus 81 --G~~-~vdapV~g~~~~a~~g~l--------~i~~gg~~~~~~~~~~ll~~~~-~~~~~~G~~G~a~~~Kl~~n~~~~~ 148 (257)
|.. ++|+||+++|..+..|++ .+++|++++.+++++++|+.++ ..++++|++++|+.+|+++|.+.+.
T Consensus 138 ~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~ 217 (411)
T TIGR03026 138 ASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAV 217 (411)
T ss_pred hcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHH
Confidence 654 789999999999999998 8999999999999999999998 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCcHHH
Q 025140 149 MMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIA 226 (257)
Q Consensus 149 ~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~--f~~~~~~KD~~~~~~~a~~~g~~~p~~ 226 (257)
++++++|++.+|++.|+|++.++++++.+ +++..++|.|+ |...++.||++++++.+++.|+++|++
T Consensus 218 ~ia~~nE~~~la~~~GiD~~~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~ 286 (411)
T TIGR03026 218 KIAFANELARICEALGIDVYEVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELI 286 (411)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHH
Confidence 99999999999999999999999999874 24555667775 577889999999999999999999999
Q ss_pred HHHHHHHHHH
Q 025140 227 AAANELYKVA 236 (257)
Q Consensus 227 ~~~~~~~~~a 236 (257)
+.+.++.+.-
T Consensus 287 ~~~~~~N~~~ 296 (411)
T TIGR03026 287 EAAREINDSQ 296 (411)
T ss_pred HHHHHHHHHh
Confidence 9999876654
No 18
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.96 E-value=2.9e-30 Score=207.78 Aligned_cols=127 Identities=31% Similarity=0.553 Sum_probs=114.9
Q ss_pred cchhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 4 PNNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 4 ~~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
..++|.+.|++.++|++|++++||+||+|||+++++++++++++ +++.+.+|++|||+||++|+++++++++++++|++
T Consensus 36 ~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 36 KAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR 114 (163)
T ss_dssp HHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE
T ss_pred hhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-HhhccccceEEEecCCcchhhhhhhhhhhhhccce
Confidence 34779999999999999999999999999999999999998877 99999999999999999999999999999999999
Q ss_pred EEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCcee-cCC
Q 025140 84 FLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY-LGD 131 (257)
Q Consensus 84 ~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~-~G~ 131 (257)
|+|+||+|+|..+++|++++|+||++++|++++|+|+.|+.+++| +|+
T Consensus 115 ~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 115 YVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp EEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred eeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceeeeCc
Confidence 999999999999999999999999999999999999999999985 585
No 19
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.95 E-value=3.6e-27 Score=180.87 Aligned_cols=121 Identities=40% Similarity=0.646 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccc-cccCCCCCCCchhhHHHHHHH
Q 025140 133 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS-MIESLYPTAFPLKHQQKDLRL 211 (257)
Q Consensus 133 G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~-~~~~~~~~~f~~~~~~KD~~~ 211 (257)
|+|+.+|+++|++.++++.+++|++.++++.|+|++.++++++.+++.||+++.+.|+ +.+++|.|+|+++++.||+++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 7899999999999999999999999999999999999999999999999999999995 899999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHCCCCCcchHHHHHHH
Q 025140 212 ALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 253 (257)
Q Consensus 212 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~ 253 (257)
+++.+++.|+|+|+.+.+.++|+.+.+.|+|++|+++++++|
T Consensus 81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999986
No 20
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.94 E-value=1.5e-26 Score=211.63 Aligned_cols=213 Identities=12% Similarity=0.071 Sum_probs=172.9
Q ss_pred hcCccccCCHHHHHhcCCEEEEecCCh------HHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHH--cC
Q 025140 10 YSRCRYQPSPDEVAASCDVTFAMLADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TG 81 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~~~advvi~~l~~~------~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~--~G 81 (257)
+.|...+.+..+++++||++|+|||+| .+++.|+.+.+++.+.+.+|++||++||++|.+++++.+.+.+ .|
T Consensus 61 ~~g~l~~t~~~~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g 140 (425)
T PRK15182 61 EARYLKFTSEIEKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSG 140 (425)
T ss_pred hhCCeeEEeCHHHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccC
Confidence 344445677778899999999999999 5567777766889999999999999999999999987655544 38
Q ss_pred CcEEEec--------CCCChHHhhcCceE-EEecCChhHHHHHHHHHHHhc-CCceecCCCchHHHHHHHHHHHHHHHHH
Q 025140 82 ASFLEAP--------VSGSKKPAEDGQLI-FLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMA 151 (257)
Q Consensus 82 ~~~vdap--------V~g~~~~a~~g~l~-i~~gg~~~~~~~~~~ll~~~~-~~~~~~G~~G~a~~~Kl~~n~~~~~~~~ 151 (257)
..+.|.| +.+|.......++. ++.|++++..++++++++.+. ..+++++++++|+.+|+++|++.+.+++
T Consensus 141 ~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia 220 (425)
T PRK15182 141 MTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIA 220 (425)
T ss_pred CCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 8888854 44444444444444 555667788889999999997 4578899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCC-CchhhHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 025140 152 TFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA-FPLKHQQKDLRLALGLAESVSQSTPIAAAAN 230 (257)
Q Consensus 152 ~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~-f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~ 230 (257)
+++|++.+|++.|+|.+++.+++... |. +.. +.|| |...|+.||.......+++.|++++++++++
T Consensus 221 ~~NE~a~lae~~GiD~~~v~~a~~~~----~~-------~~~--~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~ 287 (425)
T PRK15182 221 LVNELAIIFNRLNIDTEAVLRAAGSK----WN-------FLP--FRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGR 287 (425)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHhcCC----CC-------ccc--CCCCccccccccccHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999999999996654 21 111 2355 8889999999999999999999999999998
Q ss_pred HHHHH
Q 025140 231 ELYKV 235 (257)
Q Consensus 231 ~~~~~ 235 (257)
++.+.
T Consensus 288 ~iN~~ 292 (425)
T PRK15182 288 RLNDN 292 (425)
T ss_pred HHHHH
Confidence 87554
No 21
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=190.33 Aligned_cols=228 Identities=20% Similarity=0.242 Sum_probs=187.4
Q ss_pred CcchhhhhcCccccCCHHHHHhc---CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHH
Q 025140 3 TPNNAFYYSRCRYQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA 79 (257)
Q Consensus 3 ~~~~~~~~~Ga~~~~s~~ea~~~---advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~ 79 (257)
+.+++++..|++.++|+.|.++. ..+|++|||..+.+.+|+ +.+.+.+.+|.+|||-.+.....+.+.++.+++
T Consensus 34 ~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi---~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~ 110 (300)
T COG1023 34 TAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI---DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE 110 (300)
T ss_pred HHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---HHHHhhcCCCCEEEECCccchHHHHHHHHHHHh
Confidence 34578999999999999998864 679999999999999999 788888999999999999999999999999999
Q ss_pred cCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcC---CceecCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 025140 80 TGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK---SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEG 156 (257)
Q Consensus 80 ~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~---~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea 156 (257)
+|++|+|+..|||+.+++.|. .+|+|||+++|++++|+|+.+.. ...|+|+.|+|+.+||++|-+.+++|++++|.
T Consensus 111 kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEG 189 (300)
T COG1023 111 KGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEG 189 (300)
T ss_pred cCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999998 88999999999999999999976 47899999999999999999999999999999
Q ss_pred HHHHHH--cCCCHHHHHHHHhhcC-CCchhhhcccccccc-CCCCCCCchhh-HHHHHHHHHHHHHhcCCCcHHHHHH-H
Q 025140 157 LLHSEK--VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIE-SLYPTAFPLKH-QQKDLRLALGLAESVSQSTPIAAAA-N 230 (257)
Q Consensus 157 ~~la~~--~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~-~~~~~~f~~~~-~~KD~~~~~~~a~~~g~~~p~~~~~-~ 230 (257)
+.+.++ +.+|.+.+.++.+.++ ..||.++-....+-+ ++.. .+.-.. -.-+=+..++.+-+.|+|.|++..+ .
T Consensus 190 felL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~-q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~ 268 (300)
T COG1023 190 FELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLD-QISGRVSDSGEGRWTVEEALDLGVPAPVIALALM 268 (300)
T ss_pred HHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHH-HhcCeeccCCCceeehHHHHhcCCCchHHHHHHH
Confidence 999987 5578889999999987 688887643322211 1110 000000 0012233467788999999998765 4
Q ss_pred HHHHH
Q 025140 231 ELYKV 235 (257)
Q Consensus 231 ~~~~~ 235 (257)
+.|+.
T Consensus 269 ~Rf~S 273 (300)
T COG1023 269 MRFRS 273 (300)
T ss_pred HHHhc
Confidence 45543
No 22
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.93 E-value=5e-25 Score=201.57 Aligned_cols=207 Identities=12% Similarity=0.060 Sum_probs=169.5
Q ss_pred hcCccccCCHHHHHhcCCEEEEecCCh---------HHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHc
Q 025140 10 YSRCRYQPSPDEVAASCDVTFAMLADP---------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT 80 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~~~advvi~~l~~~---------~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~ 80 (257)
+.|...+.+. .++||+||+|||++ ..+++++ +++.+.+.+|++||++||++|.+++++...+.++
T Consensus 63 ~~g~l~~~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 63 EGGYLRATTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred hcCceeeecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4565555443 34899999999998 6777776 6788889999999999999999999999988876
Q ss_pred CCc--------------EEEec--CCCChHHhhcCceEEEecC-ChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHH
Q 025140 81 GAS--------------FLEAP--VSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVN 143 (257)
Q Consensus 81 G~~--------------~vdap--V~g~~~~a~~g~l~i~~gg-~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n 143 (257)
+.. ++++| +..|...+..+++..++|| +++.+++++++|+.++..++++|++++|+.+|+++|
T Consensus 137 ~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N 216 (415)
T PRK11064 137 RPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTEN 216 (415)
T ss_pred ccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHH
Confidence 543 46777 6677777777777899999 999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCc
Q 025140 144 MIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQST 223 (257)
Q Consensus 144 ~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~ 223 (257)
.+.+.++++++|+..+|++.|+|++.+.+.++..+ ++ .++.. .+||...|+.||...... +.+.+.
T Consensus 217 ~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~~---ri------~~l~p--G~G~GG~ClpkD~~~L~~---~~~~~~ 282 (415)
T PRK11064 217 SFRDVNIAFANELSLICADQGINVWELIRLANRHP---RV------NILQP--GPGVGGHCIAVDPWFIVA---QNPQQA 282 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCC---Cc------ccCCC--CCCCCCccccccHHHHHH---hcCCcc
Confidence 99999999999999999999999999999998653 11 11211 256888999999987644 556678
Q ss_pred HHHHHHHHHHHHH
Q 025140 224 PIAAAANELYKVA 236 (257)
Q Consensus 224 p~~~~~~~~~~~a 236 (257)
++++++++.-+.-
T Consensus 283 ~l~~~a~~~N~~~ 295 (415)
T PRK11064 283 RLIRTAREVNDGK 295 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888765443
No 23
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.93 E-value=1.4e-24 Score=196.55 Aligned_cols=204 Identities=17% Similarity=0.145 Sum_probs=168.5
Q ss_pred cCccccC--CHHHHHhcCCEEEEecCCh----------HHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHH
Q 025140 11 SRCRYQP--SPDEVAASCDVTFAMLADP----------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 78 (257)
Q Consensus 11 ~Ga~~~~--s~~ea~~~advvi~~l~~~----------~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~ 78 (257)
.+.++.. ++.+++++||+||+|||++ ..+++++ +++.+ +.+|++||++||++|.+++++.+.+.
T Consensus 57 ~~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~ 132 (388)
T PRK15057 57 DKIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYR 132 (388)
T ss_pred CCCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhh
Confidence 3445544 4788999999999999988 6788887 67766 68999999999999999999999988
Q ss_pred HcCCcEEEecCCCChHHhhcCce--------EEEecCChhHHHHHHHHHHH--hcCCce-ecCCCchHHHHHHHHHHHHH
Q 025140 79 ATGASFLEAPVSGSKKPAEDGQL--------IFLAAGDKSLYNTVAPLLDI--MGKSRF-YLGDVGNGAAMKLVVNMIMG 147 (257)
Q Consensus 79 ~~G~~~vdapV~g~~~~a~~g~l--------~i~~gg~~~~~~~~~~ll~~--~~~~~~-~~G~~G~a~~~Kl~~n~~~~ 147 (257)
++|+.| +|+++..|++ .+++|++++..+++.++|.. ++..+. +++++++|+.+|+++|.+.+
T Consensus 133 ~~~v~~-------~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a 205 (388)
T PRK15057 133 TENIIF-------SPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLA 205 (388)
T ss_pred cCcEEE-------CcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHH
Confidence 777655 8999999999 99999999889999999854 565554 68999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHH
Q 025140 148 SMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAA 227 (257)
Q Consensus 148 ~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~ 227 (257)
.++++++|+..+|++.|+|...+.++++..+- ..+..+. ..+||...|+.||.......+ .++++++++
T Consensus 206 ~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~r-------i~~~~l~--pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~ 274 (388)
T PRK15057 206 MRVAYFNELDSYAESLGLNTRQIIEGVCLDPR-------IGNHYNN--PSFGYGGYCLPKDTKQLLANY--QSVPNNLIS 274 (388)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCC-------CCCccCC--CCCCCCCcChhhhHHHHHHhc--cCCCcHHHH
Confidence 99999999999999999999999999987531 1122221 125788999999999887655 567889999
Q ss_pred HHHHHHHHH
Q 025140 228 AANELYKVA 236 (257)
Q Consensus 228 ~~~~~~~~a 236 (257)
++++.-+.-
T Consensus 275 ~~~~~N~~~ 283 (388)
T PRK15057 275 AIVDANRTR 283 (388)
T ss_pred HHHHHHHHh
Confidence 988865543
No 24
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.91 E-value=2.1e-24 Score=192.18 Aligned_cols=227 Identities=13% Similarity=0.126 Sum_probs=189.3
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC-CCHHH--HHHHHHHHHH---cCCcEEE
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST-VDGDT--SKLINGHIKA---TGASFLE 86 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST-~~p~~--~~~la~~~~~---~G~~~vd 86 (257)
...++++.|+++++|+||+|+|+. ++++++ +.+.++.++|+++| +.|.+ .+.+++.+.+ +++.+++
T Consensus 62 ~~~~~~~~e~~~~aD~Vi~~v~~~-~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~ 133 (328)
T PRK14618 62 LYPTADPEEALAGADFAVVAVPSK-ALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS 133 (328)
T ss_pred eEEeCCHHHHHcCCCEEEEECchH-HHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE
Confidence 456789999999999999999987 467776 33457889999999 68776 7788888876 6777777
Q ss_pred ecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCce--------ecCC---------CchHHHHHHHHHHHHHHH
Q 025140 87 APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF--------YLGD---------VGNGAAMKLVVNMIMGSM 149 (257)
Q Consensus 87 apV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~--------~~G~---------~G~a~~~Kl~~n~~~~~~ 149 (257)
.|..........+++.++.|++.+.+++++++|+..+.+++ ++|. .|.++.+|+.+|+.....
T Consensus 134 gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~ 213 (328)
T PRK14618 134 GPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALI 213 (328)
T ss_pred CccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 66655554555578999999999999999999999988776 4564 699999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhh----cCCCchhhhccc--cccccC---C-CCCCCchhhHHHHHHHHHHHHHhc
Q 025140 150 MATFSEGLLHSEKVGLDPNVLVEVVSQ----GAISAPMYSLKG--PSMIES---L-YPTAFPLKHQQKDLRLALGLAESV 219 (257)
Q Consensus 150 ~~~~~Ea~~la~~~Gld~~~~~~~l~~----~~~~s~~~~~~~--~~~~~~---~-~~~~f~~~~~~KD~~~~~~~a~~~ 219 (257)
..++.|++.++++.|+|++.+++++.. +++.|+.++++. +++.++ + +.++|.+..+.||++++.+++++.
T Consensus 214 ~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~ 293 (328)
T PRK14618 214 TRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAH 293 (328)
T ss_pred HHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHh
Confidence 999999999999999999999999876 367888888884 478877 4 667899999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHCCCCCcchHHHHHHHH
Q 025140 220 SQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 254 (257)
Q Consensus 220 g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~ 254 (257)
++++|+++.+++++ +++.+...+++.+-
T Consensus 294 ~~~~Pl~~~~~~~~-------~~~~~~~~~~~~~~ 321 (328)
T PRK14618 294 GHDLPIVEAVARVA-------RGGWDPLAGLRSLM 321 (328)
T ss_pred CCCCCHHHHHHHHH-------hCCCCHHHHHHHHh
Confidence 99999999999886 45567766666554
No 25
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.89 E-value=1.5e-22 Score=179.67 Aligned_cols=231 Identities=15% Similarity=0.169 Sum_probs=181.2
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcC-CCCHHHHHHHHHHHHHcC-----CcEE
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATG-----ASFL 85 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~S-T~~p~~~~~la~~~~~~G-----~~~v 85 (257)
|.+.+.++.++++++|+||+|+|+ .++++++ +++.+.+.+++++|+++ |++|++.+.+++.+++.. ..++
T Consensus 58 ~~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~ 133 (325)
T PRK00094 58 NLRATTDLAEALADADLILVAVPS-QALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVL 133 (325)
T ss_pred CeEEeCCHHHHHhCCCEEEEeCCH-HHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEE
Confidence 567788999999999999999998 5788888 56767677899999998 899988888888887753 3456
Q ss_pred EecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCC-----------------CchHHHHHHHHHHHHHH
Q 025140 86 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-----------------VGNGAAMKLVVNMIMGS 148 (257)
Q Consensus 86 dapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~-----------------~G~a~~~Kl~~n~~~~~ 148 (257)
++|.......+...++.++.|++.+.+++++++|+..+.++++... .|.+..+|+.+|.+...
T Consensus 134 ~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~ 213 (325)
T PRK00094 134 SGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAAL 213 (325)
T ss_pred ECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 6776655555566677888888999999999999988876654433 38888899999999999
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhhc----CCCchhhhccc--cccccCC-C-----CCCCchhhHHHHHHHHHHHH
Q 025140 149 MMATFSEGLLHSEKVGLDPNVLVEVVSQG----AISAPMYSLKG--PSMIESL-Y-----PTAFPLKHQQKDLRLALGLA 216 (257)
Q Consensus 149 ~~~~~~Ea~~la~~~Gld~~~~~~~l~~~----~~~s~~~~~~~--~~~~~~~-~-----~~~f~~~~~~KD~~~~~~~a 216 (257)
...++.|++.++++.|+|++.+++++..+ ...|+..+++. ..+..+. + .++ .+..+.||++++.+++
T Consensus 214 ~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a 292 (325)
T PRK00094 214 ITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELA 292 (325)
T ss_pred HHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHH
Confidence 99999999999999999999999886554 23445454444 2333332 1 112 5667899999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHCCCCCcchHHHHHHHH
Q 025140 217 ESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 254 (257)
Q Consensus 217 ~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~ 254 (257)
++.|+++|+.+.+.++| +.+.+...+++.+.
T Consensus 293 ~~~~~~~P~~~~~~~~~-------~~~~~~~~~~~~~~ 323 (325)
T PRK00094 293 KKLGVEMPITEAVYAVL-------YEGKDPREAVEDLM 323 (325)
T ss_pred HHhCCCCCHHHHHHHHH-------cCCCCHHHHHHHHh
Confidence 99999999999999997 46677777766553
No 26
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.88 E-value=1.3e-21 Score=172.76 Aligned_cols=221 Identities=12% Similarity=0.070 Sum_probs=182.4
Q ss_pred cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCCh
Q 025140 14 RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK 93 (257)
Q Consensus 14 ~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~ 93 (257)
+.+.++++++++||+||.|+|++.+++..+++ .+ ....++.++|..| +++....++++.+...+..++|.|+.+..
T Consensus 71 ~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~--~l-~~~~~~~~ii~ss-ts~~~~~~la~~~~~~~~~~~~hp~~p~~ 146 (308)
T PRK06129 71 RVTDSLADAVADADYVQESAPENLELKRALFA--EL-DALAPPHAILASS-TSALLASAFTEHLAGRERCLVAHPINPPY 146 (308)
T ss_pred EEECcHHHhhCCCCEEEECCcCCHHHHHHHHH--HH-HHhCCCcceEEEe-CCCCCHHHHHHhcCCcccEEEEecCCCcc
Confidence 67899999999999999999999888777663 23 3344666777644 44556778998887778889999998642
Q ss_pred HHhhcCceEEEec---CChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 025140 94 KPAEDGQLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL 170 (257)
Q Consensus 94 ~~a~~g~l~i~~g---g~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~ 170 (257)
.. .++.+++ ++++++++++++++.+|++++|+|+.+.|. ++||+ +.+.++|++.++++.|+|++.+
T Consensus 147 ~~----~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~i 215 (308)
T PRK06129 147 LI----PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDI 215 (308)
T ss_pred cC----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHH
Confidence 11 3677886 899999999999999999999999877775 55664 4478999999999999999999
Q ss_pred HHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCCCCCcchHHHH
Q 025140 171 VEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVI 250 (257)
Q Consensus 171 ~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~ 250 (257)
.++++.+.+.+|.+ ++|.+..+.|.++|...++.||..++.+++++.+.|.|++....+......+.-++..++..+.
T Consensus 216 d~~~~~~~g~~~~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (308)
T PRK06129 216 DAVIRDGLGLRWSF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQ 293 (308)
T ss_pred HHHHHhccCCCccC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99999998888877 7888877778789999999999999999999999999999887776666677678888887776
Q ss_pred H
Q 025140 251 E 251 (257)
Q Consensus 251 ~ 251 (257)
+
T Consensus 294 ~ 294 (308)
T PRK06129 294 A 294 (308)
T ss_pred H
Confidence 5
No 27
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.88 E-value=1.8e-22 Score=178.25 Aligned_cols=220 Identities=16% Similarity=0.171 Sum_probs=176.8
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccc-cCCCCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCC--C
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVS--G 91 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~-~l~~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~--g 91 (257)
.+++.++++++|+||+|+|+ .++++++ +.+.. .+.++++||++|+ +.|++.+.+++.+.. +|.++||. +
T Consensus 38 ~~~~~~~~~~advvi~~vp~-~~~~~v~---~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~ 110 (308)
T PRK14619 38 GLSLAAVLADADVIVSAVSM-KGVRPVA---EQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLS 110 (308)
T ss_pred CCCHHHHHhcCCEEEEECCh-HHHHHHH---HHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEE
Confidence 36899999999999999998 4888888 45544 3667899999997 889888888887764 36688885 5
Q ss_pred ChHHhh-----cCceEEEecCChhHHHHHHHHHHHhcCCceecCC-----------------CchHHHHHHHHHHHHHHH
Q 025140 92 SKKPAE-----DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-----------------VGNGAAMKLVVNMIMGSM 149 (257)
Q Consensus 92 ~~~~a~-----~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~-----------------~G~a~~~Kl~~n~~~~~~ 149 (257)
+|..+. .+++++++|++.+.+++++++|+.++.++++.++ .|.+..+|+.+|.+.+..
T Consensus 111 gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~ 190 (308)
T PRK14619 111 GPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALV 190 (308)
T ss_pred CCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 655442 2578999999999999999999999877875555 223445559999999999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhH----------------HHHHHHHH
Q 025140 150 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQ----------------QKDLRLAL 213 (257)
Q Consensus 150 ~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~----------------~KD~~~~~ 213 (257)
..++.|++.++++.|++++.++++ .+.+.++. ..+.+.+++|.++|.+... .||++++.
T Consensus 191 ~~~~~E~~~l~~~~G~~~~t~~~~--~g~gd~~~---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~ 265 (308)
T PRK14619 191 TRALPEMIRVGTHLGAQTETFYGL--SGLGDLLA---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLV 265 (308)
T ss_pred HHHHHHHHHHHHHhCCCccccccc--cchhhhhe---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHH
Confidence 999999999999999999999985 35556554 3456778888878877776 89999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHCCCCCcchHHHHHHHH
Q 025140 214 GLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 254 (257)
Q Consensus 214 ~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~ 254 (257)
+++++.|+++|+++.+.++| +++.+...+++.+.
T Consensus 266 ~~~~~~~~~~Pl~~~v~~i~-------~~~~~~~~~~~~l~ 299 (308)
T PRK14619 266 QLAQQQNIAVPITEQVYRLL-------QGEITPQQALEELM 299 (308)
T ss_pred HHHHHcCCCCCHHHHHHHHH-------cCCCCHHHHHHHHH
Confidence 99999999999999999998 45566666655443
No 28
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.86 E-value=7.5e-21 Score=169.33 Aligned_cols=163 Identities=12% Similarity=0.133 Sum_probs=139.1
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHH-HHHHHHHH----Hc
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS-KLINGHIK----AT 80 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~-~~la~~~~----~~ 80 (257)
+.+...|++.+.++.+++++||+||+|+|++.++++++ +++.+.+.++++|||+||++|... +.+.+++. ..
T Consensus 62 ~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~ 138 (342)
T PRK12557 62 KKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDV 138 (342)
T ss_pred HHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhccccccc
Confidence 35777899999999999999999999999988899998 578888889999999999999988 77777775 34
Q ss_pred CCcEEE-ecCCCChHHhhcCceEEEecC--------ChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHH
Q 025140 81 GASFLE-APVSGSKKPAEDGQLIFLAAG--------DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 151 (257)
Q Consensus 81 G~~~vd-apV~g~~~~a~~g~l~i~~gg--------~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~ 151 (257)
|+.+.+ ++|.|+ ..+.+.+|.|| +++.+++++++|+.++.++++++ .|.++.+|+++|++.+.+++
T Consensus 139 gi~~~~p~~v~Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a 213 (342)
T PRK12557 139 GISSMHPAAVPGT----PQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALS 213 (342)
T ss_pred CeeecCCcccccc----ccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHH
Confidence 666654 344444 45556778776 89999999999999999887776 69999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhh
Q 025140 152 TFSEGLLHSEKVGLDPNVLVEVVSQ 176 (257)
Q Consensus 152 ~~~Ea~~la~~~Gld~~~~~~~l~~ 176 (257)
+.+|++.++++.|.+++.+++-+..
T Consensus 214 ~~aE~~~l~~~~~~~p~~~~~~~~~ 238 (342)
T PRK12557 214 GVLDYYSVGTKIIKAPKEMIEKQIL 238 (342)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999988776544
No 29
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1e-19 Score=160.76 Aligned_cols=209 Identities=16% Similarity=0.173 Sum_probs=172.0
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHH---------HHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPES---------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~---------v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
.++..+.+++++++|++|+||++|.. +++|. +.+.+.+...++||..||++|.++.++.+.+.+....
T Consensus 64 l~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~ 140 (414)
T COG1004 64 LRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSG 140 (414)
T ss_pred EEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhccc
Confidence 56789999999999999999999742 45555 6778888777999999999999999999988775422
Q ss_pred EEEecCCCChHHhhcCce--------EEEecCChh-HHHHHHHHHHHh---cCCceecCCCchHHHHHHHHHHHHHHHHH
Q 025140 84 FLEAPVSGSKKPAEDGQL--------IFLAAGDKS-LYNTVAPLLDIM---GKSRFYLGDVGNGAAMKLVVNMIMGSMMA 151 (257)
Q Consensus 84 ~vdapV~g~~~~a~~g~l--------~i~~gg~~~-~~~~~~~ll~~~---~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~ 151 (257)
= |.-|...|+..++|.. .+++|.+.+ +.+.++++++.+ .. .+.+-+.-+|+++|++.|.+++..++
T Consensus 141 ~-~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~-p~l~t~~~~AE~IKyaaNafLAtKIs 218 (414)
T COG1004 141 K-DFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDV-PILFTDLREAELIKYAANAFLATKIS 218 (414)
T ss_pred C-CceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCC-CEEEecchHHHHHHHHHHHHHHHHHH
Confidence 1 7788888999988876 789998654 577888888776 33 33444678999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 025140 152 TFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANE 231 (257)
Q Consensus 152 ~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~ 231 (257)
.++|...+|++.|+|.+++.+.++... +.++++++. ..||..+|+.||++..+..+++.|.+.++++++.+
T Consensus 219 FiNEia~ice~~g~D~~~V~~gIGlD~-------RIG~~fl~a--G~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~ 289 (414)
T COG1004 219 FINEIANICEKVGADVKQVAEGIGLDP-------RIGNHFLNA--GFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVE 289 (414)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCCCc-------hhhHhhCCC--CCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHH
Confidence 999999999999999999999987742 233344432 24788999999999999999999999999999988
Q ss_pred HHHH
Q 025140 232 LYKV 235 (257)
Q Consensus 232 ~~~~ 235 (257)
+-++
T Consensus 290 vN~~ 293 (414)
T COG1004 290 VNER 293 (414)
T ss_pred HHHH
Confidence 7654
No 30
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=9.5e-19 Score=153.60 Aligned_cols=219 Identities=19% Similarity=0.202 Sum_probs=170.6
Q ss_pred hhhhhcCc-----cccCCHHHHHh---cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHH
Q 025140 6 NAFYYSRC-----RYQPSPDEVAA---SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI 77 (257)
Q Consensus 6 ~~~~~~Ga-----~~~~s~~ea~~---~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~ 77 (257)
+.|++.-+ ..+.|+.|.++ .-.-|++||.....|++++ +.+.+.|.+|.++||-.+.....+.+..+.+
T Consensus 40 d~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL 116 (473)
T COG0362 40 DEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKEL 116 (473)
T ss_pred HHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHHHH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHH
Confidence 45555432 46788888664 4678999999988889998 7899999999999999877776667777889
Q ss_pred HHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCC------ceecCCCchHHHHHHHHHHHHHHHHH
Q 025140 78 KATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS------RFYLGDVGNGAAMKLVVNMIMGSMMA 151 (257)
Q Consensus 78 ~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~------~~~~G~~G~a~~~Kl~~n~~~~~~~~ 151 (257)
.++|+.||-+.||||..+|+.|. ++|.||++++|+.++|+|+.++.+ ..|+|+-|+|+.+|+++|-+.++-|+
T Consensus 117 ~~~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQ 195 (473)
T COG0362 117 SEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQ 195 (473)
T ss_pred HhcCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHH
Confidence 99999999999999999999999 899999999999999999999754 68999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHhhc---CCCchhhhccccccccCCCCCCCchhhHHHHH-------HHHHHHHHhcC
Q 025140 152 TFSEGLLHSEK-VGLDPNVLVEVVSQG---AISAPMYSLKGPSMIESLYPTAFPLKHQQKDL-------RLALGLAESVS 220 (257)
Q Consensus 152 ~~~Ea~~la~~-~Gld~~~~~~~l~~~---~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~-------~~~~~~a~~~g 220 (257)
.++|++.+.+. .|++.+++.+++... -..|...+....-+-..|-..+-++--..-|. +.....|-+.|
T Consensus 196 lIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlG 275 (473)
T COG0362 196 LIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLG 275 (473)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcC
Confidence 99999999998 999999999988763 23444444333222222322222221111111 23355667889
Q ss_pred CCcHHHHH
Q 025140 221 QSTPIAAA 228 (257)
Q Consensus 221 ~~~p~~~~ 228 (257)
+|++++..
T Consensus 276 vP~t~I~e 283 (473)
T COG0362 276 VPLTLITE 283 (473)
T ss_pred CCcHHHHH
Confidence 99987644
No 31
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.79 E-value=6.2e-18 Score=156.47 Aligned_cols=208 Identities=16% Similarity=0.155 Sum_probs=161.9
Q ss_pred ccccCCHHHHHhcCCEEEEecCChH--------------HHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHH
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPE--------------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 78 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~--------------~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~ 78 (257)
.++.+++.+++++||++|+|||+|. .++++. +.+.+.+.++++||..||++|.+++++.+.+.
T Consensus 66 l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~ 142 (473)
T PLN02353 66 LFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILT 142 (473)
T ss_pred EEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHH
Confidence 5677888999999999999998764 455665 67888888999999999999999999999888
Q ss_pred Hc--CC--cEEEecCCCChHHhhcCce---EEEecCC-----hhHHHHHHHHHHHhcC-CceecCCCchHHHHHHHHHHH
Q 025140 79 AT--GA--SFLEAPVSGSKKPAEDGQL---IFLAAGD-----KSLYNTVAPLLDIMGK-SRFYLGDVGNGAAMKLVVNMI 145 (257)
Q Consensus 79 ~~--G~--~~vdapV~g~~~~a~~g~l---~i~~gg~-----~~~~~~~~~ll~~~~~-~~~~~G~~G~a~~~Kl~~n~~ 145 (257)
+. |. .+.-+|-+-.|..+..... .+++||. +++.++++.+++.+.+ .++.+.++.+|++.|++.|.+
T Consensus 143 ~~~~g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ 222 (473)
T PLN02353 143 HNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAF 222 (473)
T ss_pred hhCCCCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHH
Confidence 74 43 2445555544444332221 5677884 2357788999998863 456677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCC--c
Q 025140 146 MGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS--T 223 (257)
Q Consensus 146 ~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~--~ 223 (257)
...+++.++|...+|++.|+|..++.+.++..+- ..+.++. ..+||...|+.||.......+++.|.+ .
T Consensus 223 ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~r-------ig~~~l~--PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~ 293 (473)
T PLN02353 223 LAQRISSVNAMSALCEATGADVSQVSHAVGKDSR-------IGPKFLN--ASVGFGGSCFQKDILNLVYICECNGLPEVA 293 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCCc-------CCCCCCC--CCCCCCCcchhhhHHHHHHHHHHcCCchHH
Confidence 9999999999999999999999999988887531 1112221 125688899999999999999999998 7
Q ss_pred HHHHHHHHH
Q 025140 224 PIAAAANEL 232 (257)
Q Consensus 224 p~~~~~~~~ 232 (257)
++.+.+.++
T Consensus 294 ~l~~~~~~i 302 (473)
T PLN02353 294 EYWKQVIKM 302 (473)
T ss_pred HHHHHHHHH
Confidence 777776654
No 32
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.4e-16 Score=138.17 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=144.1
Q ss_pred ccCCHHHHHh---cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 025140 15 YQPSPDEVAA---SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 91 (257)
Q Consensus 15 ~~~s~~ea~~---~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g 91 (257)
.+.|++|.+. .-.+|++.|.....|+..+ +++.+.+.+|.+|||-.+.....+.+..+.+.++|+-||-+.|||
T Consensus 57 ga~S~ed~v~klk~PR~iillvkAG~pVD~~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSG 133 (487)
T KOG2653|consen 57 GAYSLEDFVSKLKKPRVIILLVKAGAPVDQFI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSG 133 (487)
T ss_pred CCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccC
Confidence 4689999874 4679999999999999998 789999999999999988777666677778889999999999999
Q ss_pred ChHHhhcCceEEEecCChhHHHHHHHHHHHhcCC-------ceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c
Q 025140 92 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS-------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-V 163 (257)
Q Consensus 92 ~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~-------~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~ 163 (257)
|.++|+.|. ++|.||+.++|..++++|+.++.+ ..|+|+-|+|+.+||++|-+.++-|+.++|++.+.++ .
T Consensus 134 GEEGAR~GP-SlMpGg~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~ 212 (487)
T KOG2653|consen 134 GEEGARYGP-SLMPGGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVL 212 (487)
T ss_pred cccccccCC-ccCCCCChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhc
Confidence 999999999 899999999999999999988543 5799999999999999999999999999999999999 8
Q ss_pred CCCHHHHHHHHhhc
Q 025140 164 GLDPNVLVEVVSQG 177 (257)
Q Consensus 164 Gld~~~~~~~l~~~ 177 (257)
|++.+++.+++...
T Consensus 213 gls~~eia~vF~~W 226 (487)
T KOG2653|consen 213 GLSNDEIAEVFDDW 226 (487)
T ss_pred CCcHHHHHHHHHhh
Confidence 89999999998774
No 33
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.70 E-value=1.8e-16 Score=141.75 Aligned_cols=215 Identities=17% Similarity=0.185 Sum_probs=159.3
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEec-----CC
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP-----VS 90 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdap-----V~ 90 (257)
..++ ++++++|+||+|++++. +.+++ +.+.+.+.++++||++++ .+...+.+.+.+.+ .++++++ ++
T Consensus 65 ~~~~-~~~~~~D~vil~vk~~~-~~~~~---~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~--~~~~~g~~~~~~~~ 136 (341)
T PRK08229 65 STDP-AALATADLVLVTVKSAA-TADAA---AALAGHARPGAVVVSFQN-GVRNADVLRAALPG--ATVLAGMVPFNVIS 136 (341)
T ss_pred ccCh-hhccCCCEEEEEecCcc-hHHHH---HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCC--CcEEEEEEEEEEEe
Confidence 3455 67789999999999865 45666 556666778888888854 55555667666643 3567763 35
Q ss_pred CChHHhh---cCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHH------------------
Q 025140 91 GSKKPAE---DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM------------------ 149 (257)
Q Consensus 91 g~~~~a~---~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~------------------ 149 (257)
.+|..+. .|++.+. +.+.++++.++|+..+.++++.++++.++..|++.|.+....
T Consensus 137 ~~pg~~~~~~~g~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~ 213 (341)
T PRK08229 137 RGPGAFHQGTSGALAIE---ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRR 213 (341)
T ss_pred cCCceEEecCCCceEec---CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHH
Confidence 5554443 5555443 335678999999999999999999999999999999754444
Q ss_pred --HHHHHHHHHHHHHcCCCHHHHHHHHhhc-----CCCchhhhccccccccCCCCCCCchhhHHHHHH------------
Q 025140 150 --MATFSEGLLHSEKVGLDPNVLVEVVSQG-----AISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR------------ 210 (257)
Q Consensus 150 --~~~~~Ea~~la~~~Gld~~~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~------------ 210 (257)
..++.|++.++++.|++++.+.++...+ ...++.+....+++...++.+ .+.|.||+.
T Consensus 214 ~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G 290 (341)
T PRK08229 214 CLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWING 290 (341)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhh
Confidence 3789999999999999987765544433 234566666656666655432 345999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHCCCCCc
Q 025140 211 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDE 244 (257)
Q Consensus 211 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~ 244 (257)
.+++.++++|+++|..+.+.+.++...+.|....
T Consensus 291 ~i~~~a~~~gv~~P~~~~~~~~~~~~~~~~~~~~ 324 (341)
T PRK08229 291 EIVRLAGRLGAPAPVNARLCALVHEAERAGARPA 324 (341)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHhCCCcCC
Confidence 7999999999999999999999999988875443
No 34
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.68 E-value=3.6e-16 Score=136.26 Aligned_cols=204 Identities=12% Similarity=0.153 Sum_probs=152.9
Q ss_pred hhhhhc-CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEc-CCCCHHHHHHHHHHHHHcCCc
Q 025140 6 NAFYYS-RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 6 ~~~~~~-Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~-ST~~p~~~~~la~~~~~~G~~ 83 (257)
+.+... |++.++++.|++++||+||+||++ .++.+++ +++.+.+.++++||++ +++++++.+++. .+
T Consensus 45 ~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~vl---~~l~~~~~~~~liIs~~aGi~~~~l~~~~----~~--- 113 (279)
T PRK07679 45 QELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAEAL---IPFKEYIHNNQLIISLLAGVSTHSIRNLL----QK--- 113 (279)
T ss_pred HHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHHHH---HHHHhhcCCCCEEEEECCCCCHHHHHHHc----CC---
Confidence 345443 888899999999999999999996 4555666 5666666788999996 999999877743 12
Q ss_pred EEEecCCCC---hHHhhcCceEEEecCC---hhHHHHHHHHHHHhcCCce------e--cCCCchHHHHHHHHHHHHHHH
Q 025140 84 FLEAPVSGS---KKPAEDGQLIFLAAGD---KSLYNTVAPLLDIMGKSRF------Y--LGDVGNGAAMKLVVNMIMGSM 149 (257)
Q Consensus 84 ~vdapV~g~---~~~a~~g~l~i~~gg~---~~~~~~~~~ll~~~~~~~~------~--~G~~G~a~~~Kl~~n~~~~~~ 149 (257)
++||+++ ++.+..+.++++++|+ ++.++.++++|+.+|..++ | +|..|+|.++
T Consensus 114 --~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~----------- 180 (279)
T PRK07679 114 --DVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPAY----------- 180 (279)
T ss_pred --CCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHHH-----------
Confidence 3678877 4466777888998887 5688999999999998665 5 5667777663
Q ss_pred HHHHHHHHH-HHHHcCCCHHHHHHHHhhcCCCc-hhhh--ccccccccCCC-CCCCchhhHHHHHHHHHHHHHhcCCCcH
Q 025140 150 MATFSEGLL-HSEKVGLDPNVLVEVVSQGAISA-PMYS--LKGPSMIESLY-PTAFPLKHQQKDLRLALGLAESVSQSTP 224 (257)
Q Consensus 150 ~~~~~Ea~~-la~~~Gld~~~~~~~l~~~~~~s-~~~~--~~~~~~~~~~~-~~~f~~~~~~KD~~~~~~~a~~~g~~~p 224 (257)
+..+.|++. .+.+.|+|.+..++++..+...+ +++. .+.|..+.+++ +|+++.... ++..++.|+.--
T Consensus 181 ~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v~spgg~t~~g-------l~~l~~~~~~~~ 253 (279)
T PRK07679 181 IYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITSPGGTTEAG-------IEVLQEHRFQQA 253 (279)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCchHHHHH-------HHHHHHCChHHH
Confidence 334455554 58999999999999998854333 4444 46677777888 678865443 445557888888
Q ss_pred HHHHHHHHHHHHHHCC
Q 025140 225 IAAAANELYKVAKSHG 240 (257)
Q Consensus 225 ~~~~~~~~~~~a~~~g 240 (257)
+.+++...++++.+.|
T Consensus 254 i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 254 LISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999887765
No 35
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.67 E-value=9.2e-16 Score=143.58 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=130.2
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 92 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~ 92 (257)
+++++|+.+++++||+||.|+|+..+++.++++ .+.+.+ +..++|++||.++..+ ++++.+..++..+++.|+...
T Consensus 68 i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~--~l~~~~-~~~~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~ 143 (495)
T PRK07531 68 LTFCASLAEAVAGADWIQESVPERLDLKRRVLA--EIDAAA-RPDALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV 143 (495)
T ss_pred eEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHH--HHHhhC-CCCcEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc
Confidence 688999999999999999999999998887763 344434 4556889999998765 777777777888999998722
Q ss_pred hHHhhcCceEEEecCC---hhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHH
Q 025140 93 KKPAEDGQLIFLAAGD---KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATF-SEGLLHSEKVGLDPN 168 (257)
Q Consensus 93 ~~~a~~g~l~i~~gg~---~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~-~Ea~~la~~~Gld~~ 168 (257)
..+.++.+++|+ ++++++++++|+.+|+++++++ |.++|++...++.++ .|++.++++.|+|++
T Consensus 144 ----~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~ 211 (495)
T PRK07531 144 ----YLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTE 211 (495)
T ss_pred ----ccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 245789999997 6999999999999999999997 678888888888774 999999999999999
Q ss_pred HHHHHHhhcCCCchh
Q 025140 169 VLVEVVSQGAISAPM 183 (257)
Q Consensus 169 ~~~~~l~~~~~~s~~ 183 (257)
.+.++++.+.+.+|.
T Consensus 212 ~id~~~~~g~g~~~~ 226 (495)
T PRK07531 212 EIDDVIRYSFGLRWA 226 (495)
T ss_pred HHHHHHhhccCCCcc
Confidence 999999988766543
No 36
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=5.6e-15 Score=130.50 Aligned_cols=167 Identities=18% Similarity=0.161 Sum_probs=136.4
Q ss_pred hhhhcC-ccccCCHHHHHhcCCEEEEecCChH---------HHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHH
Q 025140 7 AFYYSR-CRYQPSPDEVAASCDVTFAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH 76 (257)
Q Consensus 7 ~~~~~G-a~~~~s~~ea~~~advvi~~l~~~~---------~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~ 76 (257)
..++.| .+...++.++- .||++|+|||+|- -+++.. +.+.+.|.+|.+||--||++|.+++++..+
T Consensus 66 ~~v~~g~lraTtd~~~l~-~~dv~iI~VPTPl~~~~~pDls~v~~aa---~sIa~~L~kG~LVIlEST~~PGTTe~v~~p 141 (436)
T COG0677 66 EAVESGKLRATTDPEELK-ECDVFIICVPTPLKKYREPDLSYVESAA---RSIAPVLKKGDLVILESTTPPGTTEEVVKP 141 (436)
T ss_pred HHHhcCCceEecChhhcc-cCCEEEEEecCCcCCCCCCChHHHHHHH---HHHHHhcCCCCEEEEecCCCCCcHHHHHHH
Confidence 456666 45566666655 9999999999973 234444 678899999999999999999999999999
Q ss_pred HHHc--CCcE-EEecCCCChHHhhcCce-------EEEecC-ChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHH
Q 025140 77 IKAT--GASF-LEAPVSGSKKPAEDGQL-------IFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI 145 (257)
Q Consensus 77 ~~~~--G~~~-vdapV~g~~~~a~~g~l-------~i~~gg-~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~ 145 (257)
+.+. |..+ .|.-+--+|+..-.|+. .=++|| +++..+.+..+++.+-..++.+.+.-+|++.|+.-|.+
T Consensus 142 lle~~sgL~~~~Df~laysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~f 221 (436)
T COG0677 142 LLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTF 221 (436)
T ss_pred HHhhcCCCcccceeeEeeCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhh
Confidence 9874 6666 57777777777665542 335565 56777888899999988877788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 025140 146 MGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 177 (257)
Q Consensus 146 ~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~ 177 (257)
...+++.++|...+|++.|||...+.++.++-
T Consensus 222 RdVNIALaNElali~~~~GIdvwevIeaAnt~ 253 (436)
T COG0677 222 RDVNIALANELALICNAMGIDVWEVIEAANTK 253 (436)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHHHHhccC
Confidence 99999999999999999999998888888774
No 37
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.61 E-value=1.2e-14 Score=125.79 Aligned_cols=210 Identities=16% Similarity=0.142 Sum_probs=145.5
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEc-CCCCHHHHHHHHHHHHHcCCcE
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~-ST~~p~~~~~la~~~~~~G~~~ 84 (257)
+.+.+.|++.++++.|++++||+||+|++ ++++++|+ +++.+.+.++++||.. ++++++..++ .+.. .++
T Consensus 42 ~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl---~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~--~~v 112 (266)
T PLN02688 42 DVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL---TELRPLLSKDKLLVSVAAGITLADLQE---WAGG--RRV 112 (266)
T ss_pred HHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH---HHHHhhcCCCCEEEEecCCCcHHHHHH---HcCC--CCE
Confidence 45677899999999999999999999995 78899998 4666667788988876 5555555442 2221 167
Q ss_pred EE-ecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecC---------CCchHHHHHHHHHHHHHHHHHHHH
Q 025140 85 LE-APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG---------DVGNGAAMKLVVNMIMGSMMATFS 154 (257)
Q Consensus 85 vd-apV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G---------~~G~a~~~Kl~~n~~~~~~~~~~~ 154 (257)
+. .|..+...+.....++...+++++.+++++++|+.+|. ++|++ ..|+|.++ .+.++.++.
T Consensus 113 vr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~-------~~~~~~a~~ 184 (266)
T PLN02688 113 VRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAY-------IFLAIEALA 184 (266)
T ss_pred EEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHH-------HHHHHHHHH
Confidence 74 66555544333322233334588999999999999999 88874 35666653 567777888
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 025140 155 EGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANEL 232 (257)
Q Consensus 155 Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~--f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~ 232 (257)
|+ +.+.|+|++...+++..+...++.+-.. ++.+... -.+..--.-....++..++.|++-.+.+++...
T Consensus 185 ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~-----~~~~~~~l~~~v~spgG~t~~~l~~l~~~g~~~~~~~a~~~~ 256 (266)
T PLN02688 185 DG---GVAAGLPRDVALSLAAQTVLGAAKMVLE-----TGKHPGQLKDMVTSPGGTTIAGVHELEKGGFRAALMNAVVAA 256 (266)
T ss_pred HH---HHHcCCCHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHhCCCCchHHHHHHHHHHHCChHHHHHHHHHHH
Confidence 87 8899999999999998876655542111 1111000 000011123455677888899999999999999
Q ss_pred HHHHHHCC
Q 025140 233 YKVAKSHG 240 (257)
Q Consensus 233 ~~~a~~~g 240 (257)
++++.+.+
T Consensus 257 ~~r~~~~~ 264 (266)
T PLN02688 257 AKRSRELS 264 (266)
T ss_pred HHHHHHhc
Confidence 99998764
No 38
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.56 E-value=3.4e-14 Score=133.14 Aligned_cols=143 Identities=19% Similarity=0.282 Sum_probs=117.1
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEE-EEcCCCCHHHHHHHHHHHHH----cCCcEEE-
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLE- 86 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~i-vd~ST~~p~~~~~la~~~~~----~G~~~vd- 86 (257)
.+.+.++.+ +++||+||.|++++.+++.+++++ +-....++.++ .|+||++|+ ++++.+.. .|.+|++
T Consensus 75 i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~--l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~P 148 (507)
T PRK08268 75 LRPVEALAD-LADCDLVVEAIVERLDVKQALFAQ--LEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNP 148 (507)
T ss_pred eEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHH--HHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCC
Confidence 578889976 569999999999999999998743 43444677777 499999997 45555542 4999999
Q ss_pred ecCCCChHHhhcCceEEEecC---ChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 87 APVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEK 162 (257)
Q Consensus 87 apV~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 162 (257)
+|++ .|+.+++| ++++++++.++++.+++.++++|+ +| .++|-+.. ..++|++.++++
T Consensus 149 a~v~---------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~ 210 (507)
T PRK08268 149 VPLM---------KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEE 210 (507)
T ss_pred cccC---------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHc
Confidence 9999 58889986 889999999999999999999997 78 35554443 489999999999
Q ss_pred cCCCHHHHHHHHhhcCC
Q 025140 163 VGLDPNVLVEVVSQGAI 179 (257)
Q Consensus 163 ~Gld~~~~~~~l~~~~~ 179 (257)
.|++++.+.+++..+.+
T Consensus 211 g~~~~~~iD~al~~~~G 227 (507)
T PRK08268 211 GVADPATIDAILREAAG 227 (507)
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 99999999999987544
No 39
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.51 E-value=2e-13 Score=119.49 Aligned_cols=149 Identities=14% Similarity=0.145 Sum_probs=116.9
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEE-EEcCCCCHHHHHHHHHHHH-HcCCcEEEecC
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIK-ATGASFLEAPV 89 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~i-vd~ST~~p~~~~~la~~~~-~~G~~~vdapV 89 (257)
+.+.++++.+++++||+||.|+|++.+++..+++ .+.+.+.+++++ +|+||++|+...+..+... ..|.+|+ +|+
T Consensus 68 ~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~--~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv 144 (288)
T PRK09260 68 RLSYSLDLKAAVADADLVIEAVPEKLELKKAVFE--TADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPV 144 (288)
T ss_pred CeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCc
Confidence 3567889999999999999999999998877664 466667788866 8999999987655544322 2589999 899
Q ss_pred CCChHHhhcCceEEEecC---ChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 90 SGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 90 ~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
.++ +|+.|++| +++++++++++++.++++++++|+ +| .+.|=+ ....++|++.+.+.--.
T Consensus 145 ~~~-------~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G------f~~nRl---~~~~~~ea~~~~~~gv~ 208 (288)
T PRK09260 145 HKM-------KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG------FVTSRI---SALVGNEAFYMLQEGVA 208 (288)
T ss_pred ccC-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc------HHHHHH---HHHHHHHHHHHHHcCCC
Confidence 775 58999998 899999999999999999999988 77 333433 33567899988877557
Q ss_pred CHHHHHHHHhhcCC
Q 025140 166 DPNVLVEVVSQGAI 179 (257)
Q Consensus 166 d~~~~~~~l~~~~~ 179 (257)
+++++-.++..+.+
T Consensus 209 ~~~~iD~~~~~g~g 222 (288)
T PRK09260 209 TAEDIDKAIRLGLN 222 (288)
T ss_pred CHHHHHHHHHhCCC
Confidence 88888777765543
No 40
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.48 E-value=3.3e-13 Score=126.24 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=113.3
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEE-EcCCCCHHH-HHHHHHHHHHcCCcEEE-ecC
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDT-SKLINGHIKATGASFLE-APV 89 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~iv-d~ST~~p~~-~~~la~~~~~~G~~~vd-apV 89 (257)
.+.++++.+ +++||+||.|++++.+++..+|+. +-....++.++. |+||.+++. +..+....+..|.+|++ +|+
T Consensus 73 i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~--l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv 149 (503)
T TIGR02279 73 LIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQ--LEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPV 149 (503)
T ss_pred cEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHH--HHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCcccc
Confidence 356888865 569999999999999999988743 433344444443 677777753 33333333456999999 999
Q ss_pred CCChHHhhcCceEEEecC---ChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 90 SGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 90 ~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
+ .|+.+++| ++++++++.++++.+++.++++|+ +|. ++|+++ ...+.|++.+.++.++
T Consensus 150 ~---------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~----~~~~~EA~~l~e~g~a 211 (503)
T TIGR02279 150 M---------ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVA----RPYYAEALRALEEQVA 211 (503)
T ss_pred C---------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHH----HHHHHHHHHHHHcCCC
Confidence 8 38999999 899999999999999999999997 774 444444 3589999999999999
Q ss_pred CHHHHHHHHhhcCC
Q 025140 166 DPNVLVEVVSQGAI 179 (257)
Q Consensus 166 d~~~~~~~l~~~~~ 179 (257)
+++.+-+++..+.+
T Consensus 212 ~~~~ID~al~~~~G 225 (503)
T TIGR02279 212 APAVLDAALRDGAG 225 (503)
T ss_pred CHHHHHHHHHhcCC
Confidence 99999999987544
No 41
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.47 E-value=2e-13 Score=120.75 Aligned_cols=138 Identities=18% Similarity=0.160 Sum_probs=118.4
Q ss_pred HHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHH----HHcCCcEEEec------
Q 025140 19 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI----KATGASFLEAP------ 88 (257)
Q Consensus 19 ~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~----~~~G~~~vdap------ 88 (257)
+.+++++||+||-|++.+.+++..++++ +.+.+.+++++ +||+++-...+|++.+ +-.|.+|++.|
T Consensus 73 ~~~a~~~aD~ViEav~E~~~~K~~~f~~--l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lv 148 (314)
T PRK08269 73 AADALADADLVFEAVPEVLDAKREALRW--LGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLV 148 (314)
T ss_pred hHHHhccCCEEEECCcCCHHHHHHHHHH--HHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceE
Confidence 7789999999999999999999998854 66667777777 8888888888999888 34589999999
Q ss_pred -CCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 025140 89 -VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDP 167 (257)
Q Consensus 89 -V~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~ 167 (257)
|++++ +++++++++++++++.+|+.++++|+.+ | +++...+...++|++.++++.|+|+
T Consensus 149 EVv~g~------------~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~ 208 (314)
T PRK08269 149 EVSPSD------------ATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASA 208 (314)
T ss_pred EEeCCC------------CCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCH
Confidence 77777 7899999999999999999999999854 3 3566777889999999999999999
Q ss_pred HHHHHHHhhcCCC
Q 025140 168 NVLVEVVSQGAIS 180 (257)
Q Consensus 168 ~~~~~~l~~~~~~ 180 (257)
+.+.+++..+.+.
T Consensus 209 e~iD~a~~~g~G~ 221 (314)
T PRK08269 209 EDIDKAIRTGFGL 221 (314)
T ss_pred HHHHHHHHhCCCC
Confidence 9999999877553
No 42
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.46 E-value=2.8e-12 Score=116.11 Aligned_cols=144 Identities=15% Similarity=0.218 Sum_probs=120.3
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE-EecCCCChHH
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP 95 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v-dapV~g~~~~ 95 (257)
+++.+++++||+||+|+|.... .+++ +++.. +.+|++|+|+||+.+...+.+.+... ..|+ ..|++|+...
T Consensus 134 ~~~~~~~~~aDlVilavP~~~~-~~~~---~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~ 205 (374)
T PRK11199 134 DRAEDILADAGMVIVSVPIHLT-EEVI---ARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVG 205 (374)
T ss_pred hhHHHHHhcCCEEEEeCcHHHH-HHHH---HHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCc
Confidence 4778899999999999998765 4555 45666 78999999999999988888876542 3688 9999998777
Q ss_pred hhcCceEEEecC-ChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 025140 96 AEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE 172 (257)
Q Consensus 96 a~~g~l~i~~gg-~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~ 172 (257)
...+...+++++ +++.+++++++++.+|.+++++++.+....+++++ .+ .++.+++++..+++ .|++.+.+.+
T Consensus 206 ~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 206 SLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred ccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 677888888877 55788999999999999999999999999999998 33 88888999999987 8888777644
No 43
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.45 E-value=2.4e-11 Score=105.71 Aligned_cols=157 Identities=13% Similarity=0.237 Sum_probs=116.9
Q ss_pred hhhhcCcc-ccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 7 AFYYSRCR-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 7 ~~~~~Ga~-~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
.+.+.|.. .+.++.++. ++|+||+|+|.+.. .+++ .++.+ +.++++|+|++|+.+...+.+.+. .+.+|+
T Consensus 40 ~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~-~~~~---~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v 110 (275)
T PRK08507 40 KALELGLVDEIVSFEELK-KCDVIFLAIPVDAI-IEIL---PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFI 110 (275)
T ss_pred HHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHH-HHHH---HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEE
Confidence 34556763 456788866 49999999997654 4455 46666 778999999999887777666544 346799
Q ss_pred Ee-cCCCC----hHHhh----cCceEEEec---CChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHH
Q 025140 86 EA-PVSGS----KKPAE----DGQLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATF 153 (257)
Q Consensus 86 da-pV~g~----~~~a~----~g~l~i~~g---g~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~ 153 (257)
.+ |+.|+ |..+. .|...++++ ++++.++.++++|+.+|.+++++++.+..+.+|+++++.. ....++
T Consensus 111 ~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l 189 (275)
T PRK08507 111 AAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFAL 189 (275)
T ss_pred ecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHH
Confidence 99 99875 55443 677788886 4667889999999999999999999999999999999965 444555
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhc
Q 025140 154 SEGLLHSEKVGLDPNVLVEVVSQG 177 (257)
Q Consensus 154 ~Ea~~la~~~Gld~~~~~~~l~~~ 177 (257)
++++. .+.+.+.+.++...+
T Consensus 190 ~~~~~----~~~~~~~~~~~~~~g 209 (275)
T PRK08507 190 ANTVL----KEEDERNIFDLAGGG 209 (275)
T ss_pred HHHHH----hcCChHHHHhhcccc
Confidence 55552 366776666666544
No 44
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.37 E-value=3.1e-11 Score=105.01 Aligned_cols=147 Identities=11% Similarity=0.088 Sum_probs=99.9
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHH-HH--Hc--
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH-IK--AT-- 80 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~-~~--~~-- 80 (257)
+.|.+.|++.++|+.|+++++|+||+|||+++++++|+ +++++++.+|++|||+||++|++..++-+. ++ .+
T Consensus 62 e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~ 138 (341)
T TIGR01724 62 KKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDV 138 (341)
T ss_pred HHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCcccc
Confidence 45889999999999999999999999999999999998 678889999999999999999999987665 32 22
Q ss_pred CC-cEEEecCCCChHHhhcCceEEEec--------CChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHH
Q 025140 81 GA-SFLEAPVSGSKKPAEDGQLIFLAA--------GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 151 (257)
Q Consensus 81 G~-~~vdapV~g~~~~a~~g~l~i~~g--------g~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~ 151 (257)
|+ .|=-+.|-|.+.+ ...++.| .+++..+++.++.+..++..|.+-.-=.+....|+. .+.+..++
T Consensus 139 ~v~s~HP~~vP~~~~~----~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s-~vta~~~~ 213 (341)
T TIGR01724 139 GISSMHPAAVPGTPQH----GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGS-LVTAVALA 213 (341)
T ss_pred CeeccCCCCCCCCCCC----ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHH-HHHHHHHH
Confidence 22 1222333333322 2222222 356778888999999998776653222233333433 23344444
Q ss_pred HHHHHHHHH
Q 025140 152 TFSEGLLHS 160 (257)
Q Consensus 152 ~~~Ea~~la 160 (257)
++.+-...+
T Consensus 214 gil~y~~~~ 222 (341)
T TIGR01724 214 GVLDYYYVG 222 (341)
T ss_pred HHHHHHHHH
Confidence 444444333
No 45
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.36 E-value=8.9e-11 Score=108.38 Aligned_cols=155 Identities=16% Similarity=0.219 Sum_probs=122.3
Q ss_pred hcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe-c
Q 025140 10 YSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-P 88 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda-p 88 (257)
+.|+..+.++.+++.++|+||+|+|.+ .+.+++ +.+.+.+.++++|+|++|+.+...+.+.+.+ ..|.+|+.+ |
T Consensus 43 ~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl---~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~-~~~~~~V~~HP 117 (437)
T PRK08655 43 ELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI---KEVAPHVKEGSLLMDVTSVKERPVEAMEEYA-PEGVEILPTHP 117 (437)
T ss_pred HcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH---HHHHhhCCCCCEEEEcccccHHHHHHHHHhc-CCCCEEEEcCC
Confidence 358777889999999999999999974 556777 5677778899999999999999988888775 357899999 9
Q ss_pred CCCChHHhhcCceEEEecC---ChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 89 VSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 89 V~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
++|.......|+..+++.+ +++.+++++++|+.+|.+++++++. +--|++.+.....++.+++.+..+ ++.|+
T Consensus 118 maGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e---~HD~~~a~vs~lph~~a~al~~~l-~~~g~ 193 (437)
T PRK08655 118 MFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPE---EHDRIMSVVQGLTHFAYISIASTL-KRLGV 193 (437)
T ss_pred CCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 9987666667888888765 4678899999999999988888664 445566666667777777766655 67799
Q ss_pred CHHHHHHH
Q 025140 166 DPNVLVEV 173 (257)
Q Consensus 166 d~~~~~~~ 173 (257)
+.+.....
T Consensus 194 ~~~~~~~~ 201 (437)
T PRK08655 194 DIKESRKF 201 (437)
T ss_pred CHHHHHhh
Confidence 98765433
No 46
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.25 E-value=5.1e-10 Score=96.44 Aligned_cols=198 Identities=13% Similarity=0.136 Sum_probs=147.3
Q ss_pred ccCCHHHHHhcCCEEEEecCChHH-----------HHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 15 YQPSPDEVAASCDVTFAMLADPES-----------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 15 ~~~s~~ea~~~advvi~~l~~~~~-----------v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
+..++..+++++|+||++|-+|.- ++-+-...+-+.+.....+++++.||++..++..|...+. |.-.
T Consensus 68 fstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~-~n~~ 146 (481)
T KOG2666|consen 68 FSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILN-HNSK 146 (481)
T ss_pred eecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHh-cCCC
Confidence 568899999999999999987743 2111111133445556789999999999999999988884 3333
Q ss_pred EEEecCCCChHHhhcCce--------EEEecCCh--hHH---HHHHHHHHHhcCCceec-CCCchHHHHHHHHHHHHHHH
Q 025140 84 FLEAPVSGSKKPAEDGQL--------IFLAAGDK--SLY---NTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIMGSM 149 (257)
Q Consensus 84 ~vdapV~g~~~~a~~g~l--------~i~~gg~~--~~~---~~~~~ll~~~~~~~~~~-G~~G~a~~~Kl~~n~~~~~~ 149 (257)
=+..-|...|+...+|+. .+++||++ +-+ +.+..+++..-.+-..+ -..=+++.-||+.|.+++--
T Consensus 147 ~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqr 226 (481)
T KOG2666|consen 147 GIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQR 226 (481)
T ss_pred CceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHH
Confidence 344467777787777765 78999965 333 34455566554432223 33678999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCC
Q 025140 150 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 222 (257)
Q Consensus 150 ~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~ 222 (257)
+..++-+-++|+..|.|..++.-.+...+ +.++++++. +.||..+++.||+-..+-.++.+|+|
T Consensus 227 issins~salceatgadv~eva~avg~d~-------rig~kfl~a--svgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 227 ISSINSMSALCEATGADVSEVAYAVGTDS-------RIGSKFLNA--SVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred HhhhHHHHHHHHhcCCCHHHHHHHhcccc-------cccHHHhhc--ccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 99999999999999999998888877642 345566654 45899999999999999999998876
No 47
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.23 E-value=1.4e-10 Score=102.53 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=103.7
Q ss_pred cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHH----cCCcEEEecC
Q 025140 14 RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLEAPV 89 (257)
Q Consensus 14 ~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~----~G~~~vdapV 89 (257)
+.++++.+++++||+||+|+|.+.++...++ ..+.. ..++.++|.++|.++.. .++++.+.. .|++|.+.|.
T Consensus 68 ~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~--~~l~~-~~~~~~ii~s~tsg~~~-~~l~~~~~~~~~~ig~h~~~p~~ 143 (311)
T PRK06130 68 RMEAGLAAAVSGADLVIEAVPEKLELKRDVF--ARLDG-LCDPDTIFATNTSGLPI-TAIAQAVTRPERFVGTHFFTPAD 143 (311)
T ss_pred EEeCCHHHHhccCCEEEEeccCcHHHHHHHH--HHHHH-hCCCCcEEEECCCCCCH-HHHHhhcCCcccEEEEccCCCCc
Confidence 4677888999999999999999876544433 23333 33455556566555543 366666642 1445444442
Q ss_pred CCChHHhhcCceEEEecC---ChhHHHHHHHHHHHhcCCceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025140 90 SGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG 164 (257)
Q Consensus 90 ~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 164 (257)
. +.+..++.| +++++++++++|+.+|..++++++ +|. ++||++. ..++|++.++++.|
T Consensus 144 ~--------~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~~----~~~~Ea~~l~~~g~ 206 (311)
T PRK06130 144 V--------IPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQH----ALAREAISLLEKGV 206 (311)
T ss_pred c--------CceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHHH----HHHHHHHHHHHcCC
Confidence 2 224555555 578999999999999999999985 454 7788753 67999999999999
Q ss_pred CCHHHHHHHHhhcCCC
Q 025140 165 LDPNVLVEVVSQGAIS 180 (257)
Q Consensus 165 ld~~~~~~~l~~~~~~ 180 (257)
+|++.+.++++.+.+.
T Consensus 207 ~~~~~id~~~~~~~g~ 222 (311)
T PRK06130 207 ASAEDIDEVVKWSLGI 222 (311)
T ss_pred CCHHHHHHHHHhcCCC
Confidence 9999999999876554
No 48
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.19 E-value=1.9e-10 Score=100.99 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=108.6
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEE-EcCCCCHHHHHHHHHH-HHHcCCcEEEecCCCCh
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGH-IKATGASFLEAPVSGSK 93 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~iv-d~ST~~p~~~~~la~~-~~~~G~~~vdapV~g~~ 93 (257)
..+..+++++||+||.|++++.+++.++++ .+.+.+.++++|+ ++||+++.+..+.... .+-.|++|.+.|+.+
T Consensus 74 ~~~~~~~~~~aD~Vieav~e~~~~k~~v~~--~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~-- 149 (295)
T PLN02545 74 CTTNLEELRDADFIIEAIVESEDLKKKLFS--ELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIM-- 149 (295)
T ss_pred eeCCHHHhCCCCEEEEcCccCHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccC--
Confidence 444457889999999999999999888774 3555567788876 8999998876555432 222588999999864
Q ss_pred HHhhcCceEEEec---CChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 025140 94 KPAEDGQLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNV 169 (257)
Q Consensus 94 ~~a~~g~l~i~~g---g~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~ 169 (257)
.++.++. ++++++++++++|+.+|+.++++++ .| .++|+++. ..++|++.+.+.-..+++.
T Consensus 150 ------~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~----~~~~ea~~~~~~gv~~~~~ 214 (295)
T PLN02545 150 ------KLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILM----PMINEAFYALYTGVASKED 214 (295)
T ss_pred ------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHH----HHHHHHHHHHHcCCCCHHH
Confidence 4455664 4889999999999999999999988 56 34555443 3589999998887788888
Q ss_pred HHHHHhhcCC
Q 025140 170 LVEVVSQGAI 179 (257)
Q Consensus 170 ~~~~l~~~~~ 179 (257)
+-.++..+.+
T Consensus 215 iD~~~~~g~g 224 (295)
T PLN02545 215 IDTGMKLGTN 224 (295)
T ss_pred HHHHHHhccC
Confidence 8777765543
No 49
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.18 E-value=1.5e-09 Score=93.46 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=127.3
Q ss_pred hhhhc--CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 7 AFYYS--RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 7 ~~~~~--Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
.+.+. |.+.++++.|+++++|+||+|++ ++++.+++ +.+ .+.++++||+++ .+-+...+.+.+......+
T Consensus 41 ~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl---~~l--~~~~~~~vis~~--ag~~~~~l~~~~~~~~~~~ 112 (258)
T PRK06476 41 RLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL---RAL--RFRPGQTVISVI--AATDRAALLEWIGHDVKLV 112 (258)
T ss_pred HHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH---HHh--ccCCCCEEEEEC--CCCCHHHHHHHhCCCCCEE
Confidence 45554 57788999999999999999999 68888888 333 245788888854 5555667777665444567
Q ss_pred EEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 025140 85 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM-----IMGSMMATFSEGLLH 159 (257)
Q Consensus 85 vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~-----~~~~~~~~~~Ea~~l 159 (257)
.+.|. ++.+.....+.+++++ +.++++|+.+|..++ +++. |..+++ +.+..+..+.|+..+
T Consensus 113 r~~P~---~~~a~~~g~t~~~~~~----~~~~~l~~~lG~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~ 178 (258)
T PRK06476 113 RAIPL---PFVAERKGVTAIYPPD----PFVAALFDALGTAVE-CDSE------EEYDLLAAASALMATYFGILETATGW 178 (258)
T ss_pred EECCC---ChhhhCCCCeEecCCH----HHHHHHHHhcCCcEE-ECCh------HhccceeehhccHHHHHHHHHHHHHH
Confidence 89998 3333444556666654 479999999998654 6533 333333 445555677888899
Q ss_pred HHHcCCCHHHHHHHHhhcCC-Cchh-hhc--cccccccCCC-CCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 025140 160 SEKVGLDPNVLVEVVSQGAI-SAPM-YSL--KGPSMIESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYK 234 (257)
Q Consensus 160 a~~~Gld~~~~~~~l~~~~~-~s~~-~~~--~~~~~~~~~~-~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~ 234 (257)
+++.|+|++..++++..... ...+ +.. .-|.-+.... +|+=+ ....++..++.|+.-.+.+++...++
T Consensus 179 ~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spgGt-------T~~gl~~le~~~~~~~~~~a~~aa~~ 251 (258)
T PRK06476 179 LEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGL-------NEQVLNDFSRQGGYAALTDALDRVLR 251 (258)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCCch-------HHHHHHHHHHCChHHHHHHHHHHHHH
Confidence 99999999998888876431 1111 111 0111111111 22211 12234556677876666666666666
Q ss_pred HHH
Q 025140 235 VAK 237 (257)
Q Consensus 235 ~a~ 237 (257)
++.
T Consensus 252 r~~ 254 (258)
T PRK06476 252 RIN 254 (258)
T ss_pred Hhh
Confidence 554
No 50
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.17 E-value=1.6e-09 Score=94.47 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=101.4
Q ss_pred hhhhcCcc-ccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 7 AFYYSRCR-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 7 ~~~~~Ga~-~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
.+.+.|.. ...+..+++++||+||+|+|.... .+++ +.+.+.+.++.+|+|++++.+...+.+.+ .+.+|+
T Consensus 38 ~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~-~~~~---~~l~~~l~~~~ii~d~~Svk~~~~~~~~~----~~~~~v 109 (279)
T PRK07417 38 RAIERGLVDEASTDLSLLKDCDLVILALPIGLL-LPPS---EQLIPALPPEAIVTDVGSVKAPIVEAWEK----LHPRFV 109 (279)
T ss_pred HHHHCCCcccccCCHhHhcCCCEEEEcCCHHHH-HHHH---HHHHHhCCCCcEEEeCcchHHHHHHHHHH----hhCCce
Confidence 34555642 233444678999999999996554 4565 56667777899999999999887665543 334688
Q ss_pred E-ecCCCCh-HHhhcCceE-------EEe---cCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHH
Q 025140 86 E-APVSGSK-KPAEDGQLI-------FLA---AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT 152 (257)
Q Consensus 86 d-apV~g~~-~~a~~g~l~-------i~~---gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~ 152 (257)
. .|+.|++ .+.+.+... +++ +++++.++.++++++.+|.+++++++.+....+|+++|+......+.
T Consensus 110 ~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 110 GSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred eeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 8 6999986 455444433 332 25788899999999999999999999999999999998876655443
No 51
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.07 E-value=1.4e-09 Score=95.31 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=105.7
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEE-EcCCCCHHHHHHHHHHHHH----cCCcEEE-
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLE- 86 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~iv-d~ST~~p~~~~~la~~~~~----~G~~~vd- 86 (257)
.+.+++. +.+++||+||.|+|++.+++..++ .++.+.+.++++++ ++||+++. ++++.+.. .|++|++
T Consensus 72 i~~~~~~-~~~~~aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p 145 (292)
T PRK07530 72 ISTATDL-EDLADCDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNP 145 (292)
T ss_pred eEeeCCH-HHhcCCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCC
Confidence 3566777 457899999999999888776655 35666777888887 78888775 46666532 3788988
Q ss_pred ecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 025140 87 APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD 166 (257)
Q Consensus 87 apV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld 166 (257)
+|+++..+ +....+++++++++++++|+.+|+.++++++.+ -|++|+++ ...+.|++.+.++-=.+
T Consensus 146 ~~~~~~ve------i~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~----~~~~~ea~~~~~~g~~~ 211 (292)
T PRK07530 146 VPVMKLVE------LIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRIL----LPMINEAIYTLYEGVGS 211 (292)
T ss_pred cccCceEE------EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHH----HHHHHHHHHHHHhCCCC
Confidence 55553331 222245899999999999999999999998844 46777775 34578888888773347
Q ss_pred HHHHHHHHhhcC
Q 025140 167 PNVLVEVVSQGA 178 (257)
Q Consensus 167 ~~~~~~~l~~~~ 178 (257)
++.+-.++..+.
T Consensus 212 ~~~iD~~~~~g~ 223 (292)
T PRK07530 212 VEAIDTAMKLGA 223 (292)
T ss_pred HHHHHHHHHhCC
Confidence 888777776543
No 52
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.01 E-value=4.4e-09 Score=92.06 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=115.4
Q ss_pred ccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccC-CCCCEEEEcCCCCHHHHHHHHHHHHHc--CCcEEE-ecCC
Q 025140 15 YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE-APVS 90 (257)
Q Consensus 15 ~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l-~~g~~ivd~ST~~p~~~~~la~~~~~~--G~~~vd-apV~ 90 (257)
.++++ +++++||+||-|+|++.+++..+++ .+-+.. .++.+++..||..|.+.........++ |.+|.+ +|++
T Consensus 75 ~~~~~-~~~~~~d~ViEav~E~~~~K~~l~~--~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~ 151 (286)
T PRK07819 75 FTTDL-GDFADRQLVIEAVVEDEAVKTEIFA--ELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVL 151 (286)
T ss_pred eeCCH-HHhCCCCEEEEecccCHHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccC
Confidence 67888 6689999999999999999998874 233334 689999999998888876665555555 889998 7788
Q ss_pred CChHHhhcCceEEEecCChhHHHHHHHHHH-HhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 025140 91 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLD-IMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN 168 (257)
Q Consensus 91 g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~-~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~ 168 (257)
+.+ +++...++++++++++.+++. .+++.++++++ +| .+.|- .....++|++.+.++--.+++
T Consensus 152 ~lv------Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~nR---i~~~~~~Ea~~ll~eGv~~~~ 216 (286)
T PRK07819 152 PLV------ELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSG------FVVNA---LLVPYLLSAIRMVESGFATAE 216 (286)
T ss_pred ceE------EEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC------hHHHH---HHHHHHHHHHHHHHhCCCCHH
Confidence 777 667777899999999999988 69999999988 77 23333 345667899998877667888
Q ss_pred HHHHHHhhcCCC
Q 025140 169 VLVEVVSQGAIS 180 (257)
Q Consensus 169 ~~~~~l~~~~~~ 180 (257)
++-.++..+.+.
T Consensus 217 dID~~~~~g~G~ 228 (286)
T PRK07819 217 DIDKAMVLGCAH 228 (286)
T ss_pred HHHHHHHhCCCC
Confidence 887777665443
No 53
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.96 E-value=1.6e-08 Score=73.85 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHH
Q 025140 133 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLA 212 (257)
Q Consensus 133 G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~ 212 (257)
-+|+.+|++.|.+.+..++.++|...+|++.|+|...+.+.++...-. .+.+... .++|...++.||....
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri-------~~~~~~p--g~g~GG~ClpkD~~~L 72 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRI-------GPHYLRP--GPGFGGSCLPKDPYAL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTT-------TSSS-S---SSS--SSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccc-------ccccCCC--CCCCCCcchhhhHHHH
Confidence 368999999999999999999999999999999999999999885311 1222221 2468889999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHH
Q 025140 213 LGLAESVSQSTPIAAAANELYK 234 (257)
Q Consensus 213 ~~~a~~~g~~~p~~~~~~~~~~ 234 (257)
...+++.|.+.++++++.+..+
T Consensus 73 ~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 73 IYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcC
Confidence 9999999999999999887654
No 54
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.92 E-value=5.5e-09 Score=91.61 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=106.4
Q ss_pred ccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHH----cCCcEEE-ecC
Q 025140 15 YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLE-APV 89 (257)
Q Consensus 15 ~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~----~G~~~vd-apV 89 (257)
..++. +++++||+||.|+|.+..++..++ ..+.+.+.++++++.. ++.-...++++.+.. .|.+|.+ +|+
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~--tsg~~~~~la~~~~~~~r~ig~hf~~P~~~ 150 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASN--TSGIMIAEIATALERKDRFIGMHWFNPAPV 150 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEc--CCCCCHHHHHhhcCCcccEEEEecCCCccc
Confidence 34455 678999999999999887666554 3355556667776533 333344567766643 2788888 888
Q ss_pred CCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 025140 90 SGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNV 169 (257)
Q Consensus 90 ~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~ 169 (257)
++..+ +..|..+ ++++++++.++++.+++.++++++.+....-|+++|++ .|++.+.+.--.++++
T Consensus 151 ~~~vE-v~~g~~T-----~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~--------~ea~~~~~~g~a~~~~ 216 (291)
T PRK06035 151 MKLIE-VVRAALT-----SEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWL--------LEAIRSFEIGIATIKD 216 (291)
T ss_pred CccEE-EeCCCCC-----CHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHH--------HHHHHHHHcCCCCHHH
Confidence 87764 3355544 88999999999999999999999988788888888875 7888888763357888
Q ss_pred HHHHHhhcCC
Q 025140 170 LVEVVSQGAI 179 (257)
Q Consensus 170 ~~~~l~~~~~ 179 (257)
+-.++..+.+
T Consensus 217 iD~~~~~~~g 226 (291)
T PRK06035 217 IDEMCKLAFG 226 (291)
T ss_pred HHHHHhhcCC
Confidence 8777765543
No 55
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.87 E-value=2e-07 Score=82.32 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=89.1
Q ss_pred hhhcCc--cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 8 FYYSRC--RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 8 ~~~~Ga--~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
+.+.|. ..+.++.++++++|+||+|+|.+. ..+++ +.+.+.+.++.+|+|++++.+...+.+.+.+. .+++|+
T Consensus 47 a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~---~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v 121 (307)
T PRK07502 47 ARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA---AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFI 121 (307)
T ss_pred HHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH---HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEE
Confidence 344554 345788889999999999999854 45565 45556677899999999999888877766553 477899
Q ss_pred Ee-cCCCChH-Hhh-------cCceEEEe---cCChhHHHHHHHHHHHhcCCceecCCCc
Q 025140 86 EA-PVSGSKK-PAE-------DGQLIFLA---AGDKSLYNTVAPLLDIMGKSRFYLGDVG 133 (257)
Q Consensus 86 da-pV~g~~~-~a~-------~g~l~i~~---gg~~~~~~~~~~ll~~~~~~~~~~G~~G 133 (257)
.+ |+.|+.. +.+ .|...+++ +++++.++.++++++.+|.+++++++..
T Consensus 122 ~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~ 181 (307)
T PRK07502 122 PGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEH 181 (307)
T ss_pred eCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHH
Confidence 98 9987542 221 33333343 6788889999999999999988887643
No 56
>PRK07680 late competence protein ComER; Validated
Probab=98.87 E-value=5e-08 Score=84.75 Aligned_cols=153 Identities=10% Similarity=0.143 Sum_probs=103.4
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 91 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g 91 (257)
|.+...++.++++++|+||+|++ +.++.+++ +.+.+.+.++++||+++..- ..+.+.+++..+.++++. .
T Consensus 49 g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p----~ 118 (273)
T PRK07680 49 GIHVAKTIEEVISQSDLIFICVK-PLDIYPLL---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIP----S 118 (273)
T ss_pred CeEEECCHHHHHHhCCEEEEecC-HHHHHHHH---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECC----C
Confidence 77788999999999999999998 56688888 56666677889999998733 355666666544445553 3
Q ss_pred ChHHhhcCceEEEec--CChhHHHHHHHHHHHhcCCceecCC-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 025140 92 SKKPAEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAA-MKLVVNMIMGSMMATFSEGLLHSEKVGLDP 167 (257)
Q Consensus 92 ~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~-~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~ 167 (257)
.+..+..|...++.| .+.+.++.++++|+.+|. .+++.+ ...+.. +=-+.-.+.+..+.++.++. .++.|++.
T Consensus 119 ~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~ 195 (273)
T PRK07680 119 ITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISK 195 (273)
T ss_pred hHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCH
Confidence 455666788777776 466778999999999995 566754 222221 11112234444444455433 24489999
Q ss_pred HHHHHHHhhc
Q 025140 168 NVLVEVVSQG 177 (257)
Q Consensus 168 ~~~~~~l~~~ 177 (257)
+...+++...
T Consensus 196 ~~a~~~~~~~ 205 (273)
T PRK07680 196 EEATTLASEM 205 (273)
T ss_pred HHHHHHHHHH
Confidence 9888887654
No 57
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.86 E-value=3.1e-07 Score=82.99 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=103.0
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccc-cCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEE-ecCCCCh
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSK 93 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~-~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vd-apV~g~~ 93 (257)
.+++.+++++||+||+|+|.. .+.+++ +.+.. .+.++.+|.|.+++.....+.+.+. ..++.+|+. .|+.|+.
T Consensus 51 ~~~~~~~~~~aDlVilavP~~-~~~~vl---~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e 125 (359)
T PRK06545 51 AADLQRAAAEADLIVLAVPVD-ATAALL---AELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSH 125 (359)
T ss_pred ccCHHHHhcCCCEEEEeCCHH-HHHHHH---HHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCc
Confidence 456788999999999999974 677887 45554 3678999999999999888877665 346788998 5988863
Q ss_pred --------HHhhcCceEEEec---CChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 94 --------KPAEDGQLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK 162 (257)
Q Consensus 94 --------~~a~~g~l~i~~g---g~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 162 (257)
...-.+..++++. ++.+.++.++++++.+|..++++.+..--..+-++... ...+++++ +..
T Consensus 126 ~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshl-----Ph~ia~al--~~~ 198 (359)
T PRK06545 126 KSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHL-----PHILASSL--AAR 198 (359)
T ss_pred hhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccH-----HHHHHHHH--HHh
Confidence 1223455456664 47788999999999999988888764434444333322 22333333 566
Q ss_pred cCCCHHHHHHHHhh
Q 025140 163 VGLDPNVLVEVVSQ 176 (257)
Q Consensus 163 ~Gld~~~~~~~l~~ 176 (257)
.+.+......+...
T Consensus 199 ~~~~~~~~~~la~~ 212 (359)
T PRK06545 199 LAGEHPLALRLAAG 212 (359)
T ss_pred hccCchHHHhhhcc
Confidence 66665555544443
No 58
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.83 E-value=2.6e-07 Score=79.84 Aligned_cols=214 Identities=17% Similarity=0.142 Sum_probs=130.1
Q ss_pred hhhhc-CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 7 AFYYS-RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 7 ~~~~~-Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
.+.+. |.....+..++++++|+||+|++. .++++++ +.+.+.+ +++||.++...+. ..+.+++ .++.+++
T Consensus 43 ~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~---~~l~~~~--~~~vvs~~~gi~~--~~l~~~~-~~~~~iv 113 (267)
T PRK11880 43 ALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVL---SELKGQL--DKLVVSIAAGVTL--ARLERLL-GADLPVV 113 (267)
T ss_pred HHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHH---HHHHhhc--CCEEEEecCCCCH--HHHHHhc-CCCCcEE
Confidence 35554 788889999999999999999986 4577887 4554444 5677777664443 2444443 3456776
Q ss_pred EecCCCChHHhhcCceEEEecC--ChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHH--HHHHHHHHHHHHH-HH
Q 025140 86 EAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI--MGSMMATFSEGLL-HS 160 (257)
Q Consensus 86 dapV~g~~~~a~~g~l~i~~gg--~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~--~~~~~~~~~Ea~~-la 160 (257)
.+ +...|.....+...++.+. +++.++.++.+|+.+|. .+++.+.. .+..+.-+- .-..+..+.|++. ++
T Consensus 114 ~~-~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~-~~~~~~e~---~~d~~~a~~~~~pa~~~~~~~~~~~~~ 188 (267)
T PRK11880 114 RA-MPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGK-VVWVDDEK---QMDAVTAVSGSGPAYVFLFIEALADAG 188 (267)
T ss_pred Ee-cCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCe-EEEECChH---hcchHHHHhcChHHHHHHHHHHHHHHH
Confidence 63 4445555555555555554 78899999999999997 56665321 111111110 0112234445554 46
Q ss_pred HHcCCCHHHHHHHHhhcCC-CchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 025140 161 EKVGLDPNVLVEVVSQGAI-SAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 237 (257)
Q Consensus 161 ~~~Gld~~~~~~~l~~~~~-~s~~~~~~~~~~~~~~~~~~--f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 237 (257)
.+.|++++...+++..... ....+.. .+.+... -.+..--.-....++..++.|++-.+.+++.+.++++.
T Consensus 189 ~~~Gl~~~~a~~~~~~~~~g~~~~~~~------~~~~~~~l~~~v~tpgG~t~~gl~~l~~~g~~~~~~~a~~~~~~ra~ 262 (267)
T PRK11880 189 VKLGLPREQARKLAAQTVLGAAKLLLE------SGEHPAELRDNVTSPGGTTIAALRVLEEKGLRAAVIEAVQAAAKRSK 262 (267)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHh------cCCCHHHHHHhCCCCcHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 7799999998888776421 1111111 1111000 00111112245567788889999999999999999998
Q ss_pred HCC
Q 025140 238 SHG 240 (257)
Q Consensus 238 ~~g 240 (257)
+.+
T Consensus 263 ~~~ 265 (267)
T PRK11880 263 ELG 265 (267)
T ss_pred Hhc
Confidence 764
No 59
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.78 E-value=9.4e-08 Score=83.95 Aligned_cols=217 Identities=12% Similarity=0.109 Sum_probs=147.2
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC-CCHHHHHHHHHHHHHc-CCcEEEecC
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST-VDGDTSKLINGHIKAT-GASFLEAPV 89 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST-~~p~~~~~la~~~~~~-G~~~vdapV 89 (257)
..++..++.+++++||+|++.+|+ +.+++++ +.+...+.++.++|.+|- +-|++.+.+.+.+++. +..+ ..|
T Consensus 58 ~l~at~Dl~~a~~~ad~iv~avPs-~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~--~~v 131 (329)
T COG0240 58 NLKATTDLAEALDGADIIVIAVPS-QALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP--IAV 131 (329)
T ss_pred ccccccCHHHHHhcCCEEEEECCh-HHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe--EEE
Confidence 456788999999999999999996 7788888 555556788999999985 7777888888888764 5555 666
Q ss_pred CCChHHhh-----cCceEEEecCChhHHHHHHHHHHHhcCCceecCC-----------------CchHHHHHHHHHHHHH
Q 025140 90 SGSKKPAE-----DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-----------------VGNGAAMKLVVNMIMG 147 (257)
Q Consensus 90 ~g~~~~a~-----~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~-----------------~G~a~~~Kl~~n~~~~ 147 (257)
..||..|. ..+.+++.+-|.+..++++.+|..=.-+++.--+ .|-...+.+-+|.-.+
T Consensus 132 LSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~Nakaa 211 (329)
T COG0240 132 LSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAA 211 (329)
T ss_pred EECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHH
Confidence 77777774 3455566666777777777777652222211111 2334445667788888
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----CCCchhhhcc-ccccccCCCCC------CCchhhHHHHHHHHHHHH
Q 025140 148 SMMATFSEGLLHSEKVGLDPNVLVEVVSQG----AISAPMYSLK-GPSMIESLYPT------AFPLKHQQKDLRLALGLA 216 (257)
Q Consensus 148 ~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~----~~~s~~~~~~-~~~~~~~~~~~------~f~~~~~~KD~~~~~~~a 216 (257)
...-+++|+..|+...|-+++.++-+-.-+ .+.|+..+++ +..++....+. ...+-...+-.+.+.+.+
T Consensus 212 litrGL~Em~rlg~~lG~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la 291 (329)
T COG0240 212 LITRGLAEMTRLGVALGAKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELA 291 (329)
T ss_pred HHHhHHHHHHHHHHHhCCCcchhcccccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHH
Confidence 889999999999999999988665543322 1233333332 11222221111 011222456678889999
Q ss_pred HhcCCCcHHHHHHHHHHH
Q 025140 217 ESVSQSTPIAAAANELYK 234 (257)
Q Consensus 217 ~~~g~~~p~~~~~~~~~~ 234 (257)
+++|+++|+++++++++.
T Consensus 292 ~~~~i~mPI~~~Vy~vl~ 309 (329)
T COG0240 292 KKLGIEMPITEAVYRVLY 309 (329)
T ss_pred HHcCCCCCHHHHHHHHHh
Confidence 999999999999998864
No 60
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.61 E-value=1.1e-06 Score=78.83 Aligned_cols=228 Identities=15% Similarity=0.134 Sum_probs=135.1
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC-CCHHHHHHHHHHHHHc-CCcEEEecCC
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST-VDGDTSKLINGHIKAT-GASFLEAPVS 90 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST-~~p~~~~~la~~~~~~-G~~~vdapV~ 90 (257)
....+++.++++++|+||+++|. ..+++++ +.+.+.+.+..++|.++. +.+++.+.+.+.+++. +.. ..-+.
T Consensus 65 i~~t~d~~~a~~~aDlVilavps-~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~--~~~~l 138 (341)
T PRK12439 65 LRATTDFAEAANCADVVVMGVPS-HGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGH--PAGIL 138 (341)
T ss_pred eEEECCHHHHHhcCCEEEEEeCH-HHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCC--CeEEE
Confidence 34667888999999999999994 6688888 566666667777776664 5444444455555442 211 11245
Q ss_pred CChHHhhc---Cce--EEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHH-----------------HHHHHHH
Q 025140 91 GSKKPAED---GQL--IFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV-----------------VNMIMGS 148 (257)
Q Consensus 91 g~~~~a~~---g~l--~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~-----------------~n~~~~~ 148 (257)
.+|..+.+ |.. .++.+-+++..+.++.+|+.-+-+++...++-.-+..|.+ .|...+.
T Consensus 139 ~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aal 218 (341)
T PRK12439 139 AGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMV 218 (341)
T ss_pred ECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 55666543 553 3343445565666777766544333333333334444444 4444455
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhhc----CCCchhhhcc--ccccccCCCCCCC-----chhhHHHHHHHHHHHHH
Q 025140 149 MMATFSEGLLHSEKVGLDPNVLVEVVSQG----AISAPMYSLK--GPSMIESLYPTAF-----PLKHQQKDLRLALGLAE 217 (257)
Q Consensus 149 ~~~~~~Ea~~la~~~Gld~~~~~~~l~~~----~~~s~~~~~~--~~~~~~~~~~~~f-----~~~~~~KD~~~~~~~a~ 217 (257)
...++.|+..++++.|.+++.++..-.-+ +..|...+++ +..+-+|...... .+-....-++.+.+.++
T Consensus 219 i~~~~~E~~~~~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~ 298 (341)
T PRK12439 219 IARALREMTKLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFAD 298 (341)
T ss_pred HHHHHHHHHHHHHHhCCCcccccccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHH
Confidence 66789999999999999999877653332 1122222221 1122222110000 11223556777889999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHCCCCCcchHHHHHHH
Q 025140 218 SVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 253 (257)
Q Consensus 218 ~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~ 253 (257)
+.++++|+++.+++++ +++.+...+++.+
T Consensus 299 ~~~~~~Pi~~~~~~il-------~~~~~~~~~~~~l 327 (341)
T PRK12439 299 EYGLNMPIAREVDAVI-------NHGSTVEQAYRGL 327 (341)
T ss_pred HhCCCCCHHHHHHHHH-------hCCCCHHHHHHHH
Confidence 9999999999999986 4556666655544
No 61
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.60 E-value=6.8e-07 Score=79.99 Aligned_cols=207 Identities=13% Similarity=0.065 Sum_probs=127.2
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC-CCHH--HHHHHHHHHHHc-CCcEEEec
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST-VDGD--TSKLINGHIKAT-GASFLEAP 88 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST-~~p~--~~~~la~~~~~~-G~~~vdap 88 (257)
.++.+++.++++++|+||+++|+ ..+++++ +.+.+.+.+++++|.++- +.++ +.+-+.+.+++. +. ...
T Consensus 70 i~at~dl~eal~~ADiIIlAVPs-~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~---~~~ 142 (342)
T TIGR03376 70 LVAVPDLVEAAKGADILVFVIPH-QFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI---PCG 142 (342)
T ss_pred eEEECCHHHHHhcCCEEEEECCh-HHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC---CeE
Confidence 45668999999999999999996 6777777 566666777888888873 4444 445555555542 32 344
Q ss_pred CCCChHHhh---cC--ceEEEecCC----hhHHHHHHHHHHHhcCCceecCC-Cc--hHHHHH--------------HHH
Q 025140 89 VSGSKKPAE---DG--QLIFLAAGD----KSLYNTVAPLLDIMGKSRFYLGD-VG--NGAAMK--------------LVV 142 (257)
Q Consensus 89 V~g~~~~a~---~g--~l~i~~gg~----~~~~~~~~~ll~~~~~~~~~~G~-~G--~a~~~K--------------l~~ 142 (257)
+..||..|. .| +..++.+.+ .+..+.++.+|+.=.-+++..-+ +| -+-++| +-.
T Consensus 143 ~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~ 222 (342)
T TIGR03376 143 VLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGD 222 (342)
T ss_pred EeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 567777663 23 345555666 56666677666521111111111 22 244444 446
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHH------HhhcCC-CchhhhccccccccCCCCCCCchhhH--------
Q 025140 143 NMIMGSMMATFSEGLLHSEKVGLDPN--VLVEV------VSQGAI-SAPMYSLKGPSMIESLYPTAFPLKHQ-------- 205 (257)
Q Consensus 143 n~~~~~~~~~~~Ea~~la~~~Gld~~--~~~~~------l~~~~~-~s~~~~~~~~~~~~~~~~~~f~~~~~-------- 205 (257)
|.-.+....++.|+..+++..|-+++ .++.. +-+... .+..+ +..+.+. +.+++..
T Consensus 223 N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~---G~~l~~~----g~~~~~~~~~~~~~~ 295 (342)
T TIGR03376 223 NAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKV---GRAFAKT----GKSLEELEKELLNGQ 295 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhhhhheeecCccHHH---HHHHHhc----CCCHHHHHHhhcCCc
Confidence 88888888999999999999998776 66543 322211 11111 1112220 1222221
Q ss_pred ----HHHHHHHHHHHHhcCCC--cHHHHHHHHHH
Q 025140 206 ----QKDLRLALGLAESVSQS--TPIAAAANELY 233 (257)
Q Consensus 206 ----~KD~~~~~~~a~~~g~~--~p~~~~~~~~~ 233 (257)
..-++.+.+.+++.+++ +|+++++++++
T Consensus 296 ~vEG~~t~~~~~~l~~~~~i~~~~Pi~~~vy~il 329 (342)
T TIGR03376 296 SLQGVATAKEVHELLKNKNKDDEFPLFEAVYQIL 329 (342)
T ss_pred EEeeHHHHHHHHHHHHHcCCCcCCCHHHHHHHHH
Confidence 33456677888899999 99999998886
No 62
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=9.8e-07 Score=77.25 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=100.5
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEE-EEcCCCCHHHHHHHHHHHHHcCCcEEEecCC
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASFLEAPVS 90 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~i-vd~ST~~p~~~~~la~~~~~~G~~~vdapV~ 90 (257)
+.+.++++.+++++||+||.|+|.+.+++..++ +.+.+.+.+++++ .++||.+++...+. +. +..+|+-.=.+
T Consensus 71 ~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~~~~~~~---~~-~~~r~vg~Hf~ 144 (287)
T PRK08293 71 RITLTTDLAEAVKDADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLPSQFAEA---TG-RPEKFLALHFA 144 (287)
T ss_pred CeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCHHHHHhh---cC-CcccEEEEcCC
Confidence 455788999999999999999999876655444 4455666677777 47777877654333 22 22344422112
Q ss_pred CChHHhhcCceEEEe---cCChhHHHHHHHHHHHhcCCceecC-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 91 GSKKPAEDGQLIFLA---AGDKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 91 g~~~~a~~g~l~i~~---gg~~~~~~~~~~ll~~~~~~~~~~G-~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
..+ ....+..++ +.++++++++.++++.+++.++.+. + +| .+.|= .....+.|++.+.+.--.
T Consensus 145 ~p~---~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pg------fi~nR---i~~~~~~ea~~l~~~g~a 212 (287)
T PRK08293 145 NEI---WKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPG------YILNS---LLVPFLSAALALWAKGVA 212 (287)
T ss_pred CCC---CcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCC------HhHHH---HHHHHHHHHHHHHHcCCC
Confidence 111 123444444 4678999999999999999888885 4 55 12232 234567999999988778
Q ss_pred CHHHHHHHHhhcCC
Q 025140 166 DPNVLVEVVSQGAI 179 (257)
Q Consensus 166 d~~~~~~~l~~~~~ 179 (257)
+++++-.++..+.+
T Consensus 213 ~~~~iD~a~~~~~g 226 (287)
T PRK08293 213 DPETIDKTWMIATG 226 (287)
T ss_pred CHHHHHHHHHhccC
Confidence 89998777766544
No 63
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.52 E-value=5.6e-06 Score=74.71 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=134.8
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccc--cCCCCCEEEEcCC-CCHHHH--HHHHHHHHHc-CCcEE
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAAS--GMGPGKGYVDVST-VDGDTS--KLINGHIKAT-GASFL 85 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~--~l~~g~~ivd~ST-~~p~~~--~~la~~~~~~-G~~~v 85 (257)
..+..+++.++++++|+||+++|. +.+++++ +.+.+ .+.++.++|.++- +.+++. +-+.+.+++. +.
T Consensus 80 ni~~tsdl~eav~~aDiIvlAVPs-q~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--- 152 (365)
T PTZ00345 80 NIVAVSDLKEAVEDADLLIFVIPH-QFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--- 152 (365)
T ss_pred ceEEecCHHHHHhcCCEEEEEcCh-HHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC---
Confidence 345578889999999999999995 7788888 55555 5666668887763 333332 3344444432 32
Q ss_pred EecCCCChHHhh-----cCceEEEecCChhHHHHHHHHHHHhcCCceecCC-Cc--hHHH--------------HHHHHH
Q 025140 86 EAPVSGSKKPAE-----DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VG--NGAA--------------MKLVVN 143 (257)
Q Consensus 86 dapV~g~~~~a~-----~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~-~G--~a~~--------------~Kl~~n 143 (257)
...+..||..|. ..+..++.+-+.+..+.++.+|+.=.-+++.--+ .| -+.+ +++-.|
T Consensus 153 ~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N 232 (365)
T PTZ00345 153 PCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTN 232 (365)
T ss_pred CeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChh
Confidence 234467777663 2444566666777777777777532222222111 22 2333 345578
Q ss_pred HHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcC----CCchhhhcc--ccccccCCCCCCCchh------------
Q 025140 144 MIMGSMMATFSEGLLHSEKVG--LDPNVLVEVVSQGA----ISAPMYSLK--GPSMIESLYPTAFPLK------------ 203 (257)
Q Consensus 144 ~~~~~~~~~~~Ea~~la~~~G--ld~~~~~~~l~~~~----~~s~~~~~~--~~~~~~~~~~~~f~~~------------ 203 (257)
.-.+....++.|+..|+++.| -+++.++.+-.-+- ..| .+++ +..+.++. .+.+++
T Consensus 233 ~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~--~~~~~~~~~~~~~~~~~v 308 (365)
T PTZ00345 233 TKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRN--GKKSWEEIEAELLNGQKL 308 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccC--CCCCHHHHHHHhhCCcEe
Confidence 888888899999999999996 47888776533221 111 1221 11222221 001111
Q ss_pred hHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHCCCCCcchHHHHHHH
Q 025140 204 HQQKDLRLALGLAESVSQ--STPIAAAANELYKVAKSHGLSDEDFSAVIEAL 253 (257)
Q Consensus 204 ~~~KD~~~~~~~a~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~ 253 (257)
....-+..+.+.+++.++ ++|+++.+++++ +++.+...+++.+
T Consensus 309 EG~~t~~~v~~l~~~~~i~~~~Pi~~~vy~il-------~~~~~~~~~~~~l 353 (365)
T PTZ00345 309 QGTVTLKEVYEVLESHDLKKEFPLFTVTYKIA-------FEGADPSSLIDVL 353 (365)
T ss_pred chHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH-------hCCCCHHHHHHHH
Confidence 134456777899999999 899999999886 3445555554444
No 64
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.49 E-value=1.2e-05 Score=68.89 Aligned_cols=211 Identities=13% Similarity=0.114 Sum_probs=123.8
Q ss_pred hhhh-cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 7 AFYY-SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 7 ~~~~-~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
.+.+ .|.+.+++..++++++|+||+||+ |.++++|+ +.+...+.++++||.++..-+-. ++.+.+. .+.+++
T Consensus 24 ~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi~~~--~l~~~~~-~~~~iv 96 (245)
T TIGR00112 24 ALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGVTLE--KLSQLLG-GTRRVV 96 (245)
T ss_pred HHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCCCHH--HHHHHcC-CCCeEE
Confidence 3444 388889999999999999999999 89999998 45544455678888886543322 3333442 222332
Q ss_pred EecCCCChHHhhcCceEEEecC--ChhHHHHHHHHHHHhcCCceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 86 EAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSE 161 (257)
Q Consensus 86 dapV~g~~~~a~~g~l~i~~gg--~~~~~~~~~~ll~~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~ 161 (257)
= -+--.+...+.|...+..+. +++..+.++.+|+.+|. ++++.+ ......+--+...+.+..+.++.+ .+.
T Consensus 97 R-~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~E~~~~~~talsgsgPA~~~~~~~al~~---~~v 171 (245)
T TIGR00112 97 R-VMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGE-VVELPEALMDAVTALSGSGPAYVFLFIEALAD---AGV 171 (245)
T ss_pred E-ECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC-EEEECHHHcchHHhhccCcHHHHHHHHHHHHH---HHH
Confidence 2 23334445556665555542 34556789999999997 556644 344444433444444444444444 577
Q ss_pred HcCCCHHHHHHHHhhcC-CCchhhhcc--ccccccCCC-CCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 025140 162 KVGLDPNVLVEVVSQGA-ISAPMYSLK--GPSMIESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA 236 (257)
Q Consensus 162 ~~Gld~~~~~~~l~~~~-~~s~~~~~~--~~~~~~~~~-~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a 236 (257)
+.|++.+...+++.... +...++... -|.-+.... +|+=+ ....++..++.|+.--+.+++...++++
T Consensus 172 ~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGt-------T~~gl~~Le~~~~~~~~~~a~~aa~~r~ 243 (245)
T TIGR00112 172 KQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGT-------TIAGLAVLEEKGVRGAVIEAVEAAVRRS 243 (245)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHH-------HHHHHHHHHHCChHHHHHHHHHHHHHHh
Confidence 88999999888887754 222222211 111111111 22211 2233455566777766666666666654
No 65
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.47 E-value=1.4e-05 Score=68.93 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=79.2
Q ss_pred hcCccccC-CHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe-
Q 025140 10 YSRCRYQP-SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA- 87 (257)
Q Consensus 10 ~~Ga~~~~-s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda- 87 (257)
+.|+.... +..+++.++|+||+|+|- ..+.+++ +.+.+.+.+|.+|+|.+++.-.....+.+.+. .+.+||-.
T Consensus 29 ~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l---~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~H 103 (258)
T PF02153_consen 29 ELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVL---EEIAPYLKPGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGH 103 (258)
T ss_dssp HTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHH---HHHHCGS-TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEE
T ss_pred HCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHH---HHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC-cccceeecC
Confidence 45664332 226899999999999995 5566777 67777788999999999999988887777665 67788755
Q ss_pred cCCCC----h----HHhhcCceEEEecC---ChhHHHHHHHHHHHhcCCceecCC
Q 025140 88 PVSGS----K----KPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD 131 (257)
Q Consensus 88 pV~g~----~----~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~~~~~~~~G~ 131 (257)
|+.|. + ...-.|...+++-+ +.+.++.++.+++.+|.+++++-+
T Consensus 104 PM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~ 158 (258)
T PF02153_consen 104 PMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMDA 158 (258)
T ss_dssp ESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--H
T ss_pred CCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcCH
Confidence 77776 2 23335676777733 457889999999999999888743
No 66
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.45 E-value=2.3e-06 Score=74.61 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=97.0
Q ss_pred cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHH----cCCcEEE-ec
Q 025140 14 RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLE-AP 88 (257)
Q Consensus 14 ~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~----~G~~~vd-ap 88 (257)
+..++.. .+++||+||.|+|.+..++..++ ..+.+.+.+++++ .++|.+...+ ++++.+.. .|.+|.+ ++
T Consensus 72 ~~~~~~~-~~~~aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il-~s~ts~~~~~-~la~~~~~~~r~ig~h~~~P~~ 146 (282)
T PRK05808 72 TGTTDLD-DLKDADLVIEAATENMDLKKKIF--AQLDEIAKPEAIL-ATNTSSLSIT-ELAAATKRPDKVIGMHFFNPVP 146 (282)
T ss_pred EEeCCHH-HhccCCeeeecccccHHHHHHHH--HHHHhhCCCCcEE-EECCCCCCHH-HHHHhhCCCcceEEeeccCCcc
Confidence 4456664 57899999999998777774444 4465666666666 5555555544 66666632 3566665 45
Q ss_pred CCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 025140 89 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDP 167 (257)
Q Consensus 89 V~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~ 167 (257)
+..+.+ ...| -+++++.+++++++++.+|+.++++++ +| .+.| -.+...+.|++.+.++--.++
T Consensus 147 ~~~~ve-v~~g-----~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~---Ri~~~~~~ea~~~~~~gv~~~ 211 (282)
T PRK05808 147 VMKLVE-IIRG-----LATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVN---RILIPMINEAIFVLAEGVATA 211 (282)
T ss_pred cCccEE-EeCC-----CCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHH---HHHHHHHHHHHHHHHhCCCCH
Confidence 544442 1111 346889999999999999999999977 55 2233 344566789999987755788
Q ss_pred HHHHHHHhhcC
Q 025140 168 NVLVEVVSQGA 178 (257)
Q Consensus 168 ~~~~~~l~~~~ 178 (257)
+++-.++..+.
T Consensus 212 ~diD~~~~~g~ 222 (282)
T PRK05808 212 EDIDEGMKLGC 222 (282)
T ss_pred HHHHHHHHhCC
Confidence 88877776553
No 67
>PLN02712 arogenate dehydrogenase
Probab=98.45 E-value=4.8e-06 Score=80.79 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=84.3
Q ss_pred hhhhcCccccCCHHHHHh-cCCEEEEecCChHHHHHHhcCCCcccc-cCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 7 AFYYSRCRYQPSPDEVAA-SCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 7 ~~~~~Ga~~~~s~~ea~~-~advvi~~l~~~~~v~~v~~~~~~~~~-~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
...+.|+....++.|++. .+|+||+|+|. ....+++ +.+.. .+.+|++|+|++++. ....+..+.+...|..|
T Consensus 406 ~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi---~~l~~~~lk~g~ivvDv~SvK-~~~~~~~~~~l~~~~~~ 480 (667)
T PLN02712 406 EAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL---KSLPFQRLKRSTLFVDVLSVK-EFPRNLFLQHLPQDFDI 480 (667)
T ss_pred HHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH---HHHHHhcCCCCcEEEECCCcc-HHHHHHHHHhccCCCce
Confidence 344568877889999886 58999999995 6667776 34432 467899999999998 44444444555568889
Q ss_pred E-EecCCCChHHhhcC--ceE-----EEecCChhHHHHH---HHHHHHhcCCceecCC
Q 025140 85 L-EAPVSGSKKPAEDG--QLI-----FLAAGDKSLYNTV---APLLDIMGKSRFYLGD 131 (257)
Q Consensus 85 v-dapV~g~~~~a~~g--~l~-----i~~gg~~~~~~~~---~~ll~~~~~~~~~~G~ 131 (257)
+ ..|++|.... ..| .+. .+++++...++++ ..+++.+|.+++.+.+
T Consensus 481 v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~ 537 (667)
T PLN02712 481 LCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSC 537 (667)
T ss_pred EeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCH
Confidence 8 9999998754 122 122 4456776666555 4788889998888865
No 68
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.45 E-value=7e-06 Score=72.18 Aligned_cols=206 Identities=16% Similarity=0.117 Sum_probs=120.4
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHc----CCcEEEecCCC
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSG 91 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~----G~~~vdapV~g 91 (257)
.+++.++...+|+||+|+++. ++++++ +.+...+.++++||.+... .+....+.+.+.+. |..++.++..+
T Consensus 59 ~~~~~~~~~~~d~vilavk~~-~~~~~~---~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~g~~~~~~~~~~ 133 (305)
T PRK12921 59 ITDPEELTGPFDLVILAVKAY-QLDAAI---PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLGGVVFISAQLNG 133 (305)
T ss_pred ecCHHHccCCCCEEEEEeccc-CHHHHH---HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEEEEEEEEEEECC
Confidence 456777778999999999975 456666 4555556667777766542 23333455544322 34455555544
Q ss_pred ChHHhhcCceEEEecCC----hhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHH--------------------
Q 025140 92 SKKPAEDGQLIFLAAGD----KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG-------------------- 147 (257)
Q Consensus 92 ~~~~a~~g~l~i~~gg~----~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~-------------------- 147 (257)
+..-...+.-.+.+|.. .+..+++..+|...+..+....++-...-.|++.|....
T Consensus 134 ~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~ 213 (305)
T PRK12921 134 DGVVVQRADHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGR 213 (305)
T ss_pred CeEEEEcCCCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHH
Confidence 22111122324555542 244556666777666555555557788899999886532
Q ss_pred -HHHHHHHHHHHHHHHcCCCH--HHHHHHHhhc-----CCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhc
Q 025140 148 -SMMATFSEGLLHSEKVGLDP--NVLVEVVSQG-----AISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESV 219 (257)
Q Consensus 148 -~~~~~~~Ea~~la~~~Gld~--~~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~ 219 (257)
.....+.|...++++.|++. +.+.+.+..- ...|.+++. +..+.. .-++.+. ..+++.++++
T Consensus 214 ~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~~~~sSm~~D----~~~gr~---tEid~i~---G~vv~~a~~~ 283 (305)
T PRK12921 214 DLARALLRECLAVARAEGAPLRDDVVEEIVKIFAGAPGDMKTSMLRD----MEKGRP---LEIDHLQ---GVLLRRARAH 283 (305)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCCCCcHHHHH----HHcCCc---ccHHHHH---HHHHHHHHHh
Confidence 23466889999999999763 3333333220 011111111 111111 1122222 2578999999
Q ss_pred CCCcHHHHHHHHHHHHH
Q 025140 220 SQSTPIAAAANELYKVA 236 (257)
Q Consensus 220 g~~~p~~~~~~~~~~~a 236 (257)
|+++|..+...+.+...
T Consensus 284 gv~~P~~~~l~~~~~~~ 300 (305)
T PRK12921 284 GIPTPILDTVYALLKAY 300 (305)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 99999999999988664
No 69
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.41 E-value=1.6e-07 Score=77.03 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=63.2
Q ss_pred CccccCCHHHHHhcCCEEEEecCChH---------HHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHH-HHHHcC
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING-HIKATG 81 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~---------~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~-~~~~~G 81 (257)
..++..+..+++.++|++|+|||+|. .+++++ +.+.+.+.++++||..||++|.+++++.. .+++.+
T Consensus 63 ~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 63 RLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp SEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred cchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 34677899999999999999999863 466666 67788889999999999999999996654 455444
Q ss_pred C-----cEEEecCCCChHHhh---cCceEEEecCCh-hHHHHHHH
Q 025140 82 A-----SFLEAPVSGSKKPAE---DGQLIFLAAGDK-SLYNTVAP 117 (257)
Q Consensus 82 ~-----~~vdapV~g~~~~a~---~g~l~i~~gg~~-~~~~~~~~ 117 (257)
. .++-+|-+-.+..+. ...-.++.|.++ .+.+++++
T Consensus 140 ~~~~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 140 GKKEDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp CTTTCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred ccccCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 3 455666543333321 112266667655 43335554
No 70
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.40 E-value=1.3e-05 Score=71.37 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=114.7
Q ss_pred ccccCCHHHHH-hcCCEEEEecCChHHHHHHhcCCCcccc-cCCCCCEEEEcCC-CCHHH----HHHHHHHHHHcCCcEE
Q 025140 13 CRYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVST-VDGDT----SKLINGHIKATGASFL 85 (257)
Q Consensus 13 a~~~~s~~ea~-~~advvi~~l~~~~~v~~v~~~~~~~~~-~l~~g~~ivd~ST-~~p~~----~~~la~~~~~~G~~~v 85 (257)
.+...++.+++ ..+|+||+++|+ .++++++ +.+.+ .+.+.+.+|-++. ...++ ...+.+.+..+-+.
T Consensus 58 i~~~~~~~~~~~~~~Dliiiavks-~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~-- 131 (326)
T PRK14620 58 ISVKSAIDEVLSDNATCIILAVPT-QQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIA-- 131 (326)
T ss_pred eEEeCCHHHHHhCCCCEEEEEeCH-HHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceE--
Confidence 34557777876 589999999996 5567777 45555 5555555554443 32211 12222222111111
Q ss_pred EecCCCChHHhh---cC--ceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHH--------------
Q 025140 86 EAPVSGSKKPAE---DG--QLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM-------------- 146 (257)
Q Consensus 86 dapV~g~~~~a~---~g--~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~-------------- 146 (257)
+..||..+. .+ ....+.|.+.+..+++..+|+.-+-+++.--++-..+..|++-|.+.
T Consensus 132 ---~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n 208 (326)
T PRK14620 132 ---ILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNN 208 (326)
T ss_pred ---eecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCch
Confidence 223444332 22 22333444444334444444333323333333555666676666542
Q ss_pred ---HHHHHHHHHHHHHHHHcCC--CHHHHH------HHHhhcCCCchhhhccc--cccccCCC-----CCCCchhhHHHH
Q 025140 147 ---GSMMATFSEGLLHSEKVGL--DPNVLV------EVVSQGAISAPMYSLKG--PSMIESLY-----PTAFPLKHQQKD 208 (257)
Q Consensus 147 ---~~~~~~~~Ea~~la~~~Gl--d~~~~~------~~l~~~~~~s~~~~~~~--~~~~~~~~-----~~~f~~~~~~KD 208 (257)
.....++.|+..++++.|. +++.++ |.+.... +...+++. ..+-.+.. ...-+.-....-
T Consensus 209 ~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl~g~gdl~~t~~--~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~ 286 (326)
T PRK14620 209 AHAAVITKGMNEIKTLYSAKNGSIDLNTLIGPSCLGDLILTCT--TLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFST 286 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcchhhccchhhhhhheec--CCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHH
Confidence 2235678899999999987 778774 5553321 11111111 00111100 000000112344
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCCCCCcchHHHHHH
Q 025140 209 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 252 (257)
Q Consensus 209 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~ 252 (257)
+..+.+.++++|+++|+.+.+.+++ +++.+...+++.
T Consensus 287 ~~~v~~~a~~~~i~~P~~~~l~~~~-------~~~~~~~~~~~~ 323 (326)
T PRK14620 287 VKPLISLAKKLNIELPICESIYNLL-------YENISLEKTISV 323 (326)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHHHH
Confidence 5678899999999999999998885 344555555443
No 71
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.35 E-value=3.6e-05 Score=66.89 Aligned_cols=212 Identities=12% Similarity=0.076 Sum_probs=128.3
Q ss_pred hhhh-cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcC-CCCHHHHHHHHHHHHHcCCcE
Q 025140 7 AFYY-SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 7 ~~~~-~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~S-T~~p~~~~~la~~~~~~G~~~ 84 (257)
.+.+ .|.+.+++..|++++||+||+||+ |.++++|+ +++...+.++++||+.- .++.++-++ ++. ...++
T Consensus 44 ~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl---~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~-~~~~v 115 (272)
T PRK12491 44 NASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI---NQIKDQIKNDVIVVTIAAGKSIKSTEN---EFD-RKLKV 115 (272)
T ss_pred HHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH---HHHHHhhcCCcEEEEeCCCCcHHHHHH---hcC-CCCcE
Confidence 3444 688888999999999999999999 58899998 56666666788999875 466555444 332 11222
Q ss_pred EEecCCCChHHhhcCceEEEecC--ChhHHHHHHHHHHHhcCCceecCC--CchHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 025140 85 LEAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGL-LH 159 (257)
Q Consensus 85 vdapV~g~~~~a~~g~l~i~~gg--~~~~~~~~~~ll~~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~~Ea~-~l 159 (257)
+ --+--.|...+.|-..+..+. +++..+.++.+|+.+|. ++++.+ ......+==+.-.+ +..+.|++ ..
T Consensus 116 v-R~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~~~E~~~d~~talsgsgPAf----~~~~~eal~~a 189 (272)
T PRK12491 116 I-RVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQ-TEVVNEKLMDVVTSISGSSPAY----VYMFIEAMADA 189 (272)
T ss_pred E-EECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCC-EEEEcHHHhhhHHHhccCcHHH----HHHHHHHHHHH
Confidence 2 223344555566665555442 34556789999999998 456643 23222221111122 33344444 45
Q ss_pred HHHcCCCHHHHHHHHhhcCC-Cchhhhcc--ccccccCCC-CCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 025140 160 SEKVGLDPNVLVEVVSQGAI-SAPMYSLK--GPSMIESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKV 235 (257)
Q Consensus 160 a~~~Gld~~~~~~~l~~~~~-~s~~~~~~--~~~~~~~~~-~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~ 235 (257)
+.+.|++.+.-.+++..... ...++... -|.-+.... +|+=+ ....++..++.|+.--+.+++...+++
T Consensus 190 ~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGt-------T~~gl~~le~~~~~~~~~~av~aa~~r 262 (272)
T PRK12491 190 AVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGT-------TIEAVATLEEKGLRTAIISAMKRCTQK 262 (272)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHH
Confidence 77889999998888777532 22222111 111111111 23321 233456667788888888888888888
Q ss_pred HHHC
Q 025140 236 AKSH 239 (257)
Q Consensus 236 a~~~ 239 (257)
+.+.
T Consensus 263 ~~el 266 (272)
T PRK12491 263 SMEM 266 (272)
T ss_pred HHHH
Confidence 7654
No 72
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.32 E-value=5.3e-05 Score=67.31 Aligned_cols=150 Identities=10% Similarity=0.056 Sum_probs=105.1
Q ss_pred cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCCh
Q 025140 14 RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK 93 (257)
Q Consensus 14 ~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~ 93 (257)
+.+.++.+++++||+||-|+|...+++..++ .++.+.++++. ||.+||++. ...++++.+... -+++-.=.+-.|
T Consensus 72 ~~~~~l~~av~~aDlViEavpE~l~vK~~lf--~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p-~R~~g~HffnP~ 146 (321)
T PRK07066 72 RFVATIEACVADADFIQESAPEREALKLELH--ERISRAAKPDA-IIASSTSGL-LPTDFYARATHP-ERCVVGHPFNPV 146 (321)
T ss_pred eecCCHHHHhcCCCEEEECCcCCHHHHHHHH--HHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCc-ccEEEEecCCcc
Confidence 6778999999999999999999999998887 45666665655 778877743 445666665422 233332222222
Q ss_pred HHhhcCceEEEec---CChhHHHHHHHHHHHhcCCceecC-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 025140 94 KPAEDGQLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN 168 (257)
Q Consensus 94 ~~a~~g~l~i~~g---g~~~~~~~~~~ll~~~~~~~~~~G-~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~ 168 (257)
... .|+=++. .++++++++..+++.+|+..+.+. + +| .+.|= ...+.+.|++.+.++-..+++
T Consensus 147 ~~~---pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NR---l~~a~~~EA~~lv~eGvas~e 214 (321)
T PRK07066 147 YLL---PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPG------FIADR---LLEALWREALHLVNEGVATTG 214 (321)
T ss_pred ccC---ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHH---HHHHHHHHHHHHHHhCCCCHH
Confidence 211 2343443 367899999999999999888884 4 66 23343 345678999999999889999
Q ss_pred HHHHHHhhcCCC
Q 025140 169 VLVEVVSQGAIS 180 (257)
Q Consensus 169 ~~~~~l~~~~~~ 180 (257)
++=.++..+.+.
T Consensus 215 dID~a~~~g~g~ 226 (321)
T PRK07066 215 EIDDAIRFGAGI 226 (321)
T ss_pred HHHHHHHhCCCC
Confidence 998888877554
No 73
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.25 E-value=0.00013 Score=63.58 Aligned_cols=107 Identities=18% Similarity=0.265 Sum_probs=82.2
Q ss_pred HHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe-cCCCC--hHHh
Q 025140 20 DEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGS--KKPA 96 (257)
Q Consensus 20 ~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda-pV~g~--~~~a 96 (257)
.++++.+|+||+|||= .+..+++ +.+...+++|.+|+|.+++.-.-...+.+...+.. +|+-+ |++|+ ....
T Consensus 59 ~~~~~~aD~VivavPi-~~~~~~l---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~l 133 (279)
T COG0287 59 AEAAAEADLVIVAVPI-EATEEVL---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGL 133 (279)
T ss_pred hhhcccCCEEEEeccH-HHHHHHH---HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccc
Confidence 6788889999999995 5556677 56777899999999999999888877777765544 78765 88888 3444
Q ss_pred hcCceEEEecC---ChhHHHHHHHHHHHhcCCceecCC
Q 025140 97 EDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD 131 (257)
Q Consensus 97 ~~g~l~i~~gg---~~~~~~~~~~ll~~~~~~~~~~G~ 131 (257)
-.++-+++.=+ +.+.++++..+++.+|.+++++-+
T Consensus 134 f~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~ 171 (279)
T COG0287 134 FENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDA 171 (279)
T ss_pred cCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcCh
Confidence 45665555533 346788999999999988888854
No 74
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.20 E-value=0.00022 Score=61.51 Aligned_cols=208 Identities=16% Similarity=0.107 Sum_probs=123.3
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 91 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g 91 (257)
+...+.++.++++++|+||+|++ +.++++++ ..+.+.+.++.+|-+++.+++++.+++. . .....+ --+.+
T Consensus 44 ~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl---~~i~~~l~~~~iIS~~aGi~~~~l~~~~---~-~~~~vv-r~mPn 114 (260)
T PTZ00431 44 PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL---LEIKPYLGSKLLISICGGLNLKTLEEMV---G-VEAKIV-RVMPN 114 (260)
T ss_pred CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH---HHHHhhccCCEEEEEeCCccHHHHHHHc---C-CCCeEE-EECCC
Confidence 44567889999999999999988 67788888 4565555556788889999988876552 1 111222 23334
Q ss_pred ChHHhhcCceEEEec--CChhHHHHHHHHHHHhcCCceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 025140 92 SKKPAEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDP 167 (257)
Q Consensus 92 ~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~ 167 (257)
.|.....|...+..+ .+++..+.++.+|+.+|. ++++.+ ......+==+.-.+.+..+.++. ..+.+.|++.
T Consensus 115 ~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~-~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~---~~~v~~Gl~~ 190 (260)
T PTZ00431 115 TPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGI-IQEIKEKDMDIATAISGCGPAYVFLFIESLI---DAGVKNGLNR 190 (260)
T ss_pred chhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCc-EEEEChHHcchhhhhcCCHHHHHHHHHHHHH---HHHHHcCCCH
Confidence 455555554333332 245667899999999998 456643 22222221122222333333322 4677899999
Q ss_pred HHHHHHHhhcC-CCchhhhcc--ccc-cccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHC
Q 025140 168 NVLVEVVSQGA-ISAPMYSLK--GPS-MIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 239 (257)
Q Consensus 168 ~~~~~~l~~~~-~~s~~~~~~--~~~-~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 239 (257)
+.-.+++.... +...++... -|. +.+.--+|+=+ ....++..++.|+.--+.+++..-++++.+.
T Consensus 191 ~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~-------T~~gl~~le~~g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 191 DVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGI-------TIVGLYTLEKHAFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence 99888877653 222222221 111 11111123321 2233456667888888888888888887654
No 75
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.19 E-value=1.3e-05 Score=79.08 Aligned_cols=120 Identities=16% Similarity=0.136 Sum_probs=89.6
Q ss_pred hhhcCcc--ccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE-
Q 025140 8 FYYSRCR--YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF- 84 (257)
Q Consensus 8 ~~~~Ga~--~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~- 84 (257)
+.+.|+. ...+..++++++|+||+|+|. ..+++++ +.+.+.+.++.+|+|++++.....+.+.+.+.....+|
T Consensus 44 a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl---~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~ 119 (735)
T PRK14806 44 AVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVL---ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFV 119 (735)
T ss_pred HHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHH---HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEE
Confidence 4455664 456788899999999999996 4678887 55666677889999999999988888887775556665
Q ss_pred EEecCCCChH---Hhh-----cCceEEEec---CChhHHHHHHHHHHHhcCCceecCC
Q 025140 85 LEAPVSGSKK---PAE-----DGQLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGD 131 (257)
Q Consensus 85 vdapV~g~~~---~a~-----~g~l~i~~g---g~~~~~~~~~~ll~~~~~~~~~~G~ 131 (257)
-..|++|+.. .+. .+..++++- ++++.++.++++|+.+|..++++.+
T Consensus 120 ~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~ 177 (735)
T PRK14806 120 PGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDV 177 (735)
T ss_pred ecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 5889886653 112 233344442 5677889999999999988888865
No 76
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.17 E-value=0.00033 Score=63.36 Aligned_cols=108 Identities=14% Similarity=0.229 Sum_probs=78.6
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccc---cCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe-cCCC
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAAS---GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSG 91 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~---~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda-pV~g 91 (257)
..++.+++++||+||+|+|- ..+.+++ +.+.+ .+.++.+|.|.+++.-.-.+.+ .+.+..||-. |+.|
T Consensus 42 ~~~~~~~v~~aDlVilavPv-~~~~~~l---~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG 113 (370)
T PRK08818 42 SLDPATLLQRADVLIFSAPI-RHTAALI---EEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTA 113 (370)
T ss_pred cCCHHHHhcCCCEEEEeCCH-HHHHHHH---HHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCC
Confidence 45788899999999999995 5555566 44544 3689999999999986665554 3446678765 8888
Q ss_pred Ch-HHhhcCceEEEecCC-hhHHHHHHHHHHHhcCCceecCC
Q 025140 92 SK-KPAEDGQLIFLAAGD-KSLYNTVAPLLDIMGKSRFYLGD 131 (257)
Q Consensus 92 ~~-~~a~~g~l~i~~gg~-~~~~~~~~~ll~~~~~~~~~~G~ 131 (257)
+. ...-++...+++-+. .+..+.++.+++.+|.+++.+.+
T Consensus 114 ~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~a 155 (370)
T PRK08818 114 PPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYATP 155 (370)
T ss_pred CCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcCH
Confidence 74 333456666666543 34467889999999998888854
No 77
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.03 E-value=0.00022 Score=60.68 Aligned_cols=152 Identities=11% Similarity=0.102 Sum_probs=91.2
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEE-Eec
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST-VDGDTSKLINGHIKATGASFL-EAP 88 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~v-dap 88 (257)
.|.+...+..++++++|+||+|+|+. ..++++ +.+.+.+ ++++||.++. ++.++ +.+.+. .+..++ -.|
T Consensus 52 ~~~~~~~~~~~~~~~~DiViiavp~~-~~~~v~---~~l~~~~-~~~~vis~~~gi~~~~---l~~~~~-~~~~v~r~~P 122 (245)
T PRK07634 52 YNVSTTTDWKQHVTSVDTIVLAMPPS-AHEELL---AELSPLL-SNQLVVTVAAGIGPSY---LEERLP-KGTPVAWIMP 122 (245)
T ss_pred cCcEEeCChHHHHhcCCEEEEecCHH-HHHHHH---HHHHhhc-cCCEEEEECCCCCHHH---HHHHcC-CCCeEEEECC
Confidence 37777889999999999999999975 567777 4454444 4677777764 55553 444342 233332 222
Q ss_pred CCCChHHhhcCceEEEec--CChhHHHHHHHHHHHhcCCceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025140 89 VSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG 164 (257)
Q Consensus 89 V~g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 164 (257)
..+.....|...+.++ ++++..+.++.+|+.+|..+ ++.+ .....++=-+.-.+.+..+.+ +...+.+.|
T Consensus 123 --n~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a---~~~~~~~~G 196 (245)
T PRK07634 123 --NTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQ-LCTEEEVHQLTAVTGSAPAFLYYFAES---LIEATKSYG 196 (245)
T ss_pred --cHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEE-EECHHHcchHHhhhcchHHHHHHHHHH---HHHHHHHcC
Confidence 2233444554344333 57788899999999999865 4533 122222211111122222222 334578899
Q ss_pred CCHHHHHHHHhhc
Q 025140 165 LDPNVLVEVVSQG 177 (257)
Q Consensus 165 ld~~~~~~~l~~~ 177 (257)
++.+.-.+++...
T Consensus 197 l~~~~a~~~~~~~ 209 (245)
T PRK07634 197 VDEETAKHLVIQM 209 (245)
T ss_pred CCHHHHHHHHHHH
Confidence 9999888877653
No 78
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.94 E-value=0.0012 Score=56.97 Aligned_cols=207 Identities=15% Similarity=0.138 Sum_probs=127.0
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecC
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPV 89 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV 89 (257)
-|...+++..+++.++|+||+||. |..+.+|+ ..+-. ..++++||..-- ++.+ .+.+++. +.+++- -+
T Consensus 48 ~g~~~~~~~~~~~~~advv~LavK-Pq~~~~vl---~~l~~-~~~~~lvISiaAGv~~~---~l~~~l~--~~~vvR-~M 116 (266)
T COG0345 48 YGVVTTTDNQEAVEEADVVFLAVK-PQDLEEVL---SKLKP-LTKDKLVISIAAGVSIE---TLERLLG--GLRVVR-VM 116 (266)
T ss_pred cCCcccCcHHHHHhhCCEEEEEeC-hHhHHHHH---HHhhc-ccCCCEEEEEeCCCCHH---HHHHHcC--CCceEE-eC
Confidence 466668888899999999999998 68888888 45544 568899988754 4433 3444443 233322 12
Q ss_pred CCChHHhhcCceEEEec--CChhHHHHHHHHHHHhcCCceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcC
Q 025140 90 SGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLL-HSEKVG 164 (257)
Q Consensus 90 ~g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~G 164 (257)
--.|.....|...+..+ .+++..+.+..+|+.+|. ++++.+ ......+ .--.=..+..+.|++. .+.+.|
T Consensus 117 PNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~-v~~v~E~~~da~Tai----sGSgPAyv~~~iEal~~agv~~G 191 (266)
T COG0345 117 PNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGK-VVEVEESLMDAVTAL----SGSGPAYVFLFIEALADAGVRLG 191 (266)
T ss_pred CChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCC-eEEechHHhhHHHHH----hcCCHHHHHHHHHHHHHHHHHcC
Confidence 34455667777666665 366777789999999998 667754 2222211 1111122344566664 477899
Q ss_pred CCHHHHHHHHhhcC-CCchhhhcccc--ccccCCC-CCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHCC
Q 025140 165 LDPNVLVEVVSQGA-ISAPMYSLKGP--SMIESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 240 (257)
Q Consensus 165 ld~~~~~~~l~~~~-~~s~~~~~~~~--~~~~~~~-~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 240 (257)
++.+.-+++..... +...++..... ..+.... +|+=+.--.+ +..++.|+..-+.+++...++++.+.|
T Consensus 192 l~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTiagl-------~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 192 LPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAGL-------RVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHHHHH-------HHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 99999888887753 23333333222 2222222 3433322223 334477888888888888888877654
No 79
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.87 E-value=0.00046 Score=61.42 Aligned_cols=153 Identities=11% Similarity=0.138 Sum_probs=94.3
Q ss_pred hhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 8 FYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 8 ~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
..+.|.+.. |+.|++++||+|++++|+... .+++. +++.+.+.+|++++-++-.+....+. .-..+++++-.
T Consensus 57 A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~~--~~I~~~Lk~g~iL~~a~G~~i~~~~~----~p~~~~~Vi~v 128 (330)
T PRK05479 57 AEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVYE--EEIEPNLKEGAALAFAHGFNIHFGQI----VPPADVDVIMV 128 (330)
T ss_pred HHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHHH--HHHHhcCCCCCEEEECCCCChhhcee----ccCCCCcEEEe
Confidence 344577655 899999999999999998765 77773 35777788899997776666555421 11234555443
Q ss_pred cCCCChHH-------hhcCceEEE-ecCC--hhHHHHHHHHHHHhcCCce-ecCC-CchHHHHHHH--HHHHHHHHHHHH
Q 025140 88 PVSGSKKP-------AEDGQLIFL-AAGD--KSLYNTVAPLLDIMGKSRF-YLGD-VGNGAAMKLV--VNMIMGSMMATF 153 (257)
Q Consensus 88 pV~g~~~~-------a~~g~l~i~-~gg~--~~~~~~~~~ll~~~~~~~~-~~G~-~G~a~~~Kl~--~n~~~~~~~~~~ 153 (257)
. --+|.. ...|-..++ +..| .++.+.+..++..+|.... .+.+ ...-.--.|. ..++..+....+
T Consensus 129 a-Pn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~ 207 (330)
T PRK05479 129 A-PKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELI 207 (330)
T ss_pred C-CCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHH
Confidence 3 222333 344554555 5666 7888999999999998643 1111 1100000111 223444455566
Q ss_pred HHHHHHHHHcCCCHHH
Q 025140 154 SEGLLHSEKVGLDPNV 169 (257)
Q Consensus 154 ~Ea~~la~~~Gld~~~ 169 (257)
..++.....+|.+|+.
T Consensus 208 ~~~~e~l~eaG~~pe~ 223 (330)
T PRK05479 208 KAGFETLVEAGYQPEM 223 (330)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 6667778899998874
No 80
>PLN02256 arogenate dehydrogenase
Probab=97.82 E-value=0.00049 Score=60.77 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=80.9
Q ss_pred hcCccccCCHHHHH-hcCCEEEEecCChHHHHHHhcCCCcc-cccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 10 YSRCRYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~-~~advvi~~l~~~~~v~~v~~~~~~~-~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
..|.....+..+++ .++|+||+|+|. .++.+++ +.+ ...+.++++|+|.+++.-.....+.+.+. .+.+|+-+
T Consensus 76 ~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl---~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~ 150 (304)
T PLN02256 76 ELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVL---RSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCT 150 (304)
T ss_pred HcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHH---HhhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEec
Confidence 35777778888887 479999999996 4677777 445 45567899999999977666666655543 35566544
Q ss_pred -cCCCChHH--hhcCceEEEec--------CChhHHHHHHHHHHHhcCCceecCC
Q 025140 88 -PVSGSKKP--AEDGQLIFLAA--------GDKSLYNTVAPLLDIMGKSRFYLGD 131 (257)
Q Consensus 88 -pV~g~~~~--a~~g~l~i~~g--------g~~~~~~~~~~ll~~~~~~~~~~G~ 131 (257)
|+.|.... ...+. .++.. .+++.++.++.+++.+|.+++.+-+
T Consensus 151 HPmaG~e~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~ 204 (304)
T PLN02256 151 HPMFGPESGKGGWAGL-PFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSC 204 (304)
T ss_pred CCCCCCCCCccccCCC-eEEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCH
Confidence 66666432 22233 33332 2667888999999999999888855
No 81
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.77 E-value=0.00073 Score=59.21 Aligned_cols=205 Identities=17% Similarity=0.138 Sum_probs=112.8
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHc----CCcEEEecCCC
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSG 91 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~----G~~~vdapV~g 91 (257)
.+++.++ +.+|+||+|++.. ++++++ +.+...+.++++||.+... .+....+.+.+.+. |..+..+-..+
T Consensus 58 ~~~~~~~-~~~d~vila~k~~-~~~~~~---~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 131 (304)
T PRK06522 58 ADDPAEL-GPQDLVILAVKAY-QLPAAL---PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEG 131 (304)
T ss_pred CCChhHc-CCCCEEEEecccc-cHHHHH---HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecC
Confidence 5566665 8999999999975 456676 4555556667777766553 22223444444321 11122221211
Q ss_pred C--hHHhhcCceEEEecCC---hhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHH--------------------
Q 025140 92 S--KKPAEDGQLIFLAAGD---KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM-------------------- 146 (257)
Q Consensus 92 ~--~~~a~~g~l~i~~gg~---~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~-------------------- 146 (257)
+ ......|. +.+|.. .+..+.+..+|+..+.++.+.-++-...-.|++.|...
T Consensus 132 p~~v~~~~~g~--~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~ 209 (304)
T PRK06522 132 PGVVRHTGGGR--LKIGEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDY 209 (304)
T ss_pred CCEEEEcCCCC--EEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccH
Confidence 1 11222233 344432 23355677777776665544444677778888777432
Q ss_pred -HHHHHHHHHHHHHHHHcCCCH--HHHHHHHhhcC-----CCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHh
Q 025140 147 -GSMMATFSEGLLHSEKVGLDP--NVLVEVVSQGA-----ISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAES 218 (257)
Q Consensus 147 -~~~~~~~~Ea~~la~~~Gld~--~~~~~~l~~~~-----~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~ 218 (257)
......+.|...++++.|++. +.+.+.+.... ..|.+++. +..+.. .-++. =...+++.+++
T Consensus 210 ~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~~~~sSm~~D----~~~gr~---tEid~---i~G~~v~~a~~ 279 (304)
T PRK06522 210 RALIRALMEEVAAVAEAEGVHLSVEEVREYVRQVIQKTAANTSSMLQD----LEAGRP---TEIDA---IVGYVLRRGRK 279 (304)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhhccCCCCchHHHH----HHcCCC---cccch---hccHHHHHHHH
Confidence 223356889999999998754 44444333211 11111111 111111 11111 23347899999
Q ss_pred cCCCcHHHHHHHHHHHHHHH
Q 025140 219 VSQSTPIAAAANELYKVAKS 238 (257)
Q Consensus 219 ~g~~~p~~~~~~~~~~~a~~ 238 (257)
+|+++|..+...+.++...+
T Consensus 280 ~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 280 HGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred cCCCCcHHHHHHHHHHHHHH
Confidence 99999999998888766543
No 82
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.73 E-value=0.00092 Score=58.25 Aligned_cols=152 Identities=11% Similarity=0.164 Sum_probs=91.5
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCC
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVS 90 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~ 90 (257)
+.+...+..++++++|+||+|+| +..+++++ +.+.+.+.++++||.... ++.+ +|.+++. +.+ +=--+-
T Consensus 51 ~~~~~~~~~e~~~~aDvVilavp-p~~~~~vl---~~l~~~l~~~~~ivS~~aGi~~~---~l~~~~~--~~~-vvR~MP 120 (277)
T PRK06928 51 TVELADNEAEIFTKCDHSFICVP-PLAVLPLL---KDCAPVLTPDRHVVSIAAGVSLD---DLLEITP--GLQ-VSRLIP 120 (277)
T ss_pred CeEEeCCHHHHHhhCCEEEEecC-HHHHHHHH---HHHHhhcCCCCEEEEECCCCCHH---HHHHHcC--CCC-EEEEeC
Confidence 34557888899999999999999 67788888 566666667888777765 4444 4444442 122 222233
Q ss_pred CChHHhhcCceEEEecC--ChhHHHHHHHHHHHhcCCceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHc-C
Q 025140 91 GSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLL-HSEKV-G 164 (257)
Q Consensus 91 g~~~~a~~g~l~i~~gg--~~~~~~~~~~ll~~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~-G 164 (257)
-.|...+.|...+..+. +++..+.++.+|+.+|. ++++.+ .....++==+.-.+ +..+.|++. .+.+. |
T Consensus 121 N~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v~E~~~d~~tal~gsgPA~----~~~~~~al~~a~~~~gg 195 (277)
T PRK06928 121 SLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSH-VMTIREENMDIASNLTSSSPGF----IAAIFEEFAEAAVRNSS 195 (277)
T ss_pred ccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCC-EEEEchhhCceeeeeecCHHHH----HHHHHHHHHHHHHHhCC
Confidence 44555666765554442 44567789999999998 445533 22111111111112 223334433 35566 7
Q ss_pred CCHHHHHHHHhhcC
Q 025140 165 LDPNVLVEVVSQGA 178 (257)
Q Consensus 165 ld~~~~~~~l~~~~ 178 (257)
++.+.-.+++....
T Consensus 196 l~~~~a~~l~~~~~ 209 (277)
T PRK06928 196 LSDEEAFQFLNFAL 209 (277)
T ss_pred CCHHHHHHHHHHHH
Confidence 99998888877643
No 83
>PLN02712 arogenate dehydrogenase
Probab=97.66 E-value=0.00037 Score=67.89 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=81.2
Q ss_pred hhhcCccccCCHHHHH-hcCCEEEEecCChHHHHHHhcCCCccc-ccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 8 FYYSRCRYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGAA-SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 8 ~~~~Ga~~~~s~~ea~-~~advvi~~l~~~~~v~~v~~~~~~~~-~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
..+.|+....++.|++ +++|+||+|+|. .++.+++ +.+. ..+.++++|+|++|+.....+.+.+.+ ..|..|+
T Consensus 90 A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl---~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v 164 (667)
T PLN02712 90 ARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVL---KSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDII 164 (667)
T ss_pred HHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHH---HhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEE
Confidence 4456888888999966 569999999995 6778887 4443 457789999999999877666665555 3466666
Q ss_pred Ee-cCCCChHH--hhcCceEEEec---CCh-h---HHHHHHHHHHHhcCCceecCC
Q 025140 86 EA-PVSGSKKP--AEDGQLIFLAA---GDK-S---LYNTVAPLLDIMGKSRFYLGD 131 (257)
Q Consensus 86 da-pV~g~~~~--a~~g~l~i~~g---g~~-~---~~~~~~~ll~~~~~~~~~~G~ 131 (257)
-. |+.|.... .-.+...++.+ +++ . .++.++.+++.+|.+++.+-+
T Consensus 165 ~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~ 220 (667)
T PLN02712 165 CSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSC 220 (667)
T ss_pred eeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeCH
Confidence 44 88877521 12233344442 332 2 345566999999998888744
No 84
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=97.63 E-value=0.00024 Score=61.83 Aligned_cols=96 Identities=20% Similarity=0.198 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---cCCCchhhhccccccccCCCCCCCchhh------
Q 025140 135 GAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVSQ---GAISAPMYSLKGPSMIESLYPTAFPLKH------ 204 (257)
Q Consensus 135 a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gld~~~~~~~l~~---~~~~s~~~~~~~~~~~~~~~~~~f~~~~------ 204 (257)
|+.+||++|-+.++.|++++|++.+.++ .|++.+++.+++.. +...|+.++....-+-..|.+..+=++.
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 6899999999999999999999999995 78998888777764 5567777765544333333211111111
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHH
Q 025140 205 QQKDLRLALGLAESVSQSTPIAAAAN 230 (257)
Q Consensus 205 ~~KD~~~~~~~a~~~g~~~p~~~~~~ 230 (257)
....-+...+.+-+.|+|.|++..+.
T Consensus 81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 81 QKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred CCCccchHHHHHHHhCCCccHHHHHH
Confidence 11123456778889999999987653
No 85
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.61 E-value=0.0038 Score=55.32 Aligned_cols=201 Identities=16% Similarity=0.147 Sum_probs=110.9
Q ss_pred HHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHc----CCcEEEecCCCCh--H
Q 025140 21 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSK--K 94 (257)
Q Consensus 21 ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~----G~~~vdapV~g~~--~ 94 (257)
+....+|+||+|++..+ +.+++ +.+...+.++.+||.+-. ..+....+.+.+.+. |+.++.+-..+.. .
T Consensus 68 ~~~~~~D~vilavK~~~-~~~~~---~~l~~~~~~~~~iv~lqN-G~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~ 142 (313)
T PRK06249 68 EDMPPCDWVLVGLKTTA-NALLA---PLIPQVAAPDAKVLLLQN-GLGVEEQLREILPAEHLLGGLCFICSNRVGPGVIH 142 (313)
T ss_pred hhcCCCCEEEEEecCCC-hHhHH---HHHhhhcCCCCEEEEecC-CCCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEE
Confidence 34668999999999765 34454 334444455666665533 233444455554321 3334444333321 1
Q ss_pred HhhcCceEE-EecCC------hhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHH---------------------
Q 025140 95 PAEDGQLIF-LAAGD------KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM--------------------- 146 (257)
Q Consensus 95 ~a~~g~l~i-~~gg~------~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~--------------------- 146 (257)
....|++.+ ...|+ .+..+++..+|+..+-.+.....+-...-.|++.|...
T Consensus 143 ~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~ 222 (313)
T PRK06249 143 HLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSR 222 (313)
T ss_pred ECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHH
Confidence 122344332 11232 34556677788877766666666778888888877432
Q ss_pred HHHHHHHHHHHHHHHHcCCCH--H---HHHHHHhhcCCCchhhhccccccccCCCCCCCc--hhhHHHHHHHHHHHHHhc
Q 025140 147 GSMMATFSEGLLHSEKVGLDP--N---VLVEVVSQGAISAPMYSLKGPSMIESLYPTAFP--LKHQQKDLRLALGLAESV 219 (257)
Q Consensus 147 ~~~~~~~~Ea~~la~~~Gld~--~---~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~--~~~~~KD~~~~~~~a~~~ 219 (257)
......+.|...++++.|++. + .++++..... ...+.|+. |+..+-+ ++.. ...+++.++++
T Consensus 223 ~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~-------~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~ 291 (313)
T PRK06249 223 ALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMP-------DYRPSMYH-DFEEGRPLELEAI---YANPLAAARAA 291 (313)
T ss_pred HHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCC-------CCCChHHH-HHHCCCcccHHHH---hhHHHHHHHHh
Confidence 123355789999999999862 2 2222222211 01122221 2222211 2222 34568999999
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 025140 220 SQSTPIAAAANELYKVAK 237 (257)
Q Consensus 220 g~~~p~~~~~~~~~~~a~ 237 (257)
|+++|..+.+.+.++...
T Consensus 292 Gi~~P~~~~l~~~l~~~e 309 (313)
T PRK06249 292 GCAMPRVEMLYQALEFLD 309 (313)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 999999999988766543
No 86
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.60 E-value=2.8e-05 Score=61.36 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=52.6
Q ss_pred ccCCHHHHHhcCCEEEEecCChHH-HHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 15 YQPSPDEVAASCDVTFAMLADPES-AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 15 ~~~s~~ea~~~advvi~~l~~~~~-v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
...++.++++++|+||+|+|++.. ++.+.+.. ..+.++++++|+|++++.+ .+.+.++++|++|+++
T Consensus 71 ~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~----~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g 138 (155)
T cd01065 71 AYLDLEELLAEADLIINTTPVGMKPGDELPLPP----SLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDG 138 (155)
T ss_pred eecchhhccccCCEEEeCcCCCCCCCCCCCCCH----HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCC
Confidence 456788888999999999999875 44444322 2357899999999997766 8999999999988764
No 87
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.59 E-value=0.0037 Score=54.34 Aligned_cols=209 Identities=16% Similarity=0.085 Sum_probs=109.3
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHc----CCcEEEecCCC
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSG 91 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~----G~~~vdapV~g 91 (257)
.+++.+ ....|+||+|++.. ++++++ +.+...+.++++||-+... .+....+.+.+.+. |..+..+-..+
T Consensus 51 ~~~~~~-~~~~D~iiv~vKs~-~~~~~l---~~l~~~l~~~~~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~~~~~~~~~ 124 (293)
T TIGR00745 51 ATSPEE-LPPADLVIITVKAY-QTEEAA---ALLLPLIGKNTKVLFLQNG-LGHEERLRELLPARRILGGVVTHGAVREE 124 (293)
T ss_pred ccChhh-cCCCCEEEEeccch-hHHHHH---HHhHhhcCCCCEEEEccCC-CCCHHHHHHHhCccCEEEEEEEEeeEEcC
Confidence 345555 56899999999986 466666 4555656667777765432 22233444444221 11122221111
Q ss_pred ChHHh-hcCceEEEecCCh---hHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHH---------------------
Q 025140 92 SKKPA-EDGQLIFLAAGDK---SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM--------------------- 146 (257)
Q Consensus 92 ~~~~a-~~g~l~i~~gg~~---~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~--------------------- 146 (257)
|... ..+.-.+.+|... +..+++..+|+..+.++.+..++-...-.|++.|...
T Consensus 125 -pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~ 203 (293)
T TIGR00745 125 -PGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEAR 203 (293)
T ss_pred -CcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHH
Confidence 1111 1111234555422 3345566666665555555555777778888877532
Q ss_pred HHHHHHHHHHHHHHHHcCCCH--HHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcH
Q 025140 147 GSMMATFSEGLLHSEKVGLDP--NVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTP 224 (257)
Q Consensus 147 ~~~~~~~~Ea~~la~~~Gld~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p 224 (257)
......+.|...++++.|++. +.+.+.+......++ ...+.|+ .|+..+-..+ +--=...+++.++++|+++|
T Consensus 204 ~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~---~~~sSm~-~D~~~gr~tE-id~i~G~~v~~a~~~gv~~P 278 (293)
T TIGR00745 204 ELLRRLMDEVVRVARAEGVDLPDDEVEELVRAVIRMTA---ENTSSML-QDLLRGRRTE-IDAINGAVVRLAEKLGIDAP 278 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---CCCChHH-HHHHcCCcch-HHHhccHHHHHHHHcCCCCC
Confidence 223456889999999999753 333343332100000 0001111 1111111111 11113356889999999999
Q ss_pred HHHHHHHHHHHH
Q 025140 225 IAAAANELYKVA 236 (257)
Q Consensus 225 ~~~~~~~~~~~a 236 (257)
..+.+.+.+...
T Consensus 279 ~~~~l~~~~~~~ 290 (293)
T TIGR00745 279 VNRTLYALLKAL 290 (293)
T ss_pred hHHHHHHHHHHh
Confidence 999888876543
No 88
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.51 E-value=0.0048 Score=53.04 Aligned_cols=139 Identities=11% Similarity=0.068 Sum_probs=93.2
Q ss_pred hcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc---EEE
Q 025140 10 YSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS---FLE 86 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~---~vd 86 (257)
..|.++.++-.|+++++|++|+-+|-....-++. +.++..++.|.+|-+..|++|-.--++-+.+.++.+. |=-
T Consensus 124 daGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP 200 (340)
T TIGR01723 124 DLGLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP 200 (340)
T ss_pred HcCceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC
Confidence 4699999999999999999999999876544455 5677889999999999999998766666555433222 222
Q ss_pred ecCCCChHHhhcCceEEEec-CChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 87 APVSGSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 157 (257)
Q Consensus 87 apV~g~~~~a~~g~l~i~~g-g~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~ 157 (257)
+.|- +.. ++..+.-| .+++..+++.++.+..++..|.+-..=.+....|+. .+.+..++++.+-.
T Consensus 201 aaVP----gt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS-~VTAv~~aGiL~Y~ 266 (340)
T TIGR01723 201 GCVP----EMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCS-AVTAIVYAGLLAYR 266 (340)
T ss_pred CCCC----CCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHH-HHHHHHHHHHHHHH
Confidence 2232 332 45455545 578888999999999998876663322333334433 33444455554444
No 89
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.50 E-value=0.0043 Score=53.26 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=94.7
Q ss_pred hcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc---EEE
Q 025140 10 YSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS---FLE 86 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~---~vd 86 (257)
+.|.++.++-.|+++++|++|+-+|-....-.+. +.++..++.|.+|-+..|++|-.--++-+.+.++.+. |=-
T Consensus 126 daGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HP 202 (342)
T PRK00961 126 DLGLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHP 202 (342)
T ss_pred HcCceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCC
Confidence 3699999999999999999999999876544455 5677889999999999999998777766665444322 333
Q ss_pred ecCCCChHHhhcCceEEEec-CChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 87 APVSGSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 157 (257)
Q Consensus 87 apV~g~~~~a~~g~l~i~~g-g~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~ 157 (257)
+.|-|.+ |+..+--| .+++..+++.++.+..++..|.+-.-=.+....|+. .+.+..++++.+-.
T Consensus 203 aaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS-~VTAv~~aGiL~Y~ 268 (342)
T PRK00961 203 GAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCS-AVTAIVYAGILAYR 268 (342)
T ss_pred CCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHH-HHHHHHHHHHHHHH
Confidence 4444444 44343333 477888999999999998876663322333444443 33445555555444
No 90
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.50 E-value=0.00067 Score=56.98 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=72.1
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHH---------------HHHHHHHHHHHcC
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD---------------TSKLINGHIKATG 81 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~---------------~~~~la~~~~~~G 81 (257)
.+..|+++++|+||+|+|. .++.+++ +.+...+ ++++|||++..-+. .+..+++.+. .+
T Consensus 60 ~~~~ea~~~aDvVilavp~-~~~~~~l---~~l~~~l-~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p-~~ 133 (219)
T TIGR01915 60 ADNAEAAKRADVVILAVPW-DHVLKTL---ESLRDEL-SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLP-ET 133 (219)
T ss_pred eChHHHHhcCCEEEEECCH-HHHHHHH---HHHHHhc-cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCC-CC
Confidence 5778899999999999996 4456666 3443333 45899998753321 1233444432 12
Q ss_pred CcEEEe------cCCCChHHhhcCceEEEecCChhHHHHHHHHHHHh-cCCceecCCCchHHHHHH
Q 025140 82 ASFLEA------PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKL 140 (257)
Q Consensus 82 ~~~vda------pV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~~~~~~G~~G~a~~~Kl 140 (257)
.++|-+ .+..++ ....+.-.+++|-|+++.+++..+.+.+ |-..+++|+.-.+-.+.-
T Consensus 134 ~~VVka~~~~~a~~~~~~-~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~ 198 (219)
T TIGR01915 134 SRVVAAFHNLSAVLLQDV-DDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVES 198 (219)
T ss_pred CeEeeccccCCHHHhcCC-CCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHh
Confidence 445444 223322 1112232444444567788899999999 999999999766655543
No 91
>PRK07574 formate dehydrogenase; Provisional
Probab=97.48 E-value=0.0008 Score=61.26 Aligned_cols=74 Identities=14% Similarity=0.024 Sum_probs=64.3
Q ss_pred hhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 8 FYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 8 ~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
..+.|.+...++.|+++.||+|++++|..++.+.++- ++.++.+++|.++||++....-....+.+.+++.-+.
T Consensus 231 ~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 231 EQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--ADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 3456777788999999999999999999999999873 4678889999999999999999999999999876543
No 92
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.46 E-value=0.0012 Score=61.61 Aligned_cols=131 Identities=16% Similarity=0.199 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHhcC--CceecCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHh
Q 025140 109 KSLYNTVAPLLDIMGK--SRFYLGDVGN-----GAAMKLVVNMIMGSMMATFSEGLLHSEK------VGLDPNVLVEVVS 175 (257)
Q Consensus 109 ~~~~~~~~~ll~~~~~--~~~~~G~~G~-----a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~l~ 175 (257)
.++|.|+.+.++..-. ...|.|+.+. ++.+|.+.|.+.++.+.+++|.+.+.++ .++|...+.++.+
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 4566677776655422 1345666554 8999999999999999999999999887 5589999999999
Q ss_pred hcC-CCchhhhccccccccC-CC-----CCCCc--hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHC
Q 025140 176 QGA-ISAPMYSLKGPSMIES-LY-----PTAFP--LKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 239 (257)
Q Consensus 176 ~~~-~~s~~~~~~~~~~~~~-~~-----~~~f~--~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 239 (257)
.+. ..|++++...+.+.+. +. ++.|. +......++.++..+-+.|+|+|.+..++..|+.-...
T Consensus 351 ~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~ 423 (459)
T PRK09287 351 GGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTA 423 (459)
T ss_pred CCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 887 5888887654433221 11 12221 22334456888999999999999999999777655443
No 93
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.46 E-value=0.0014 Score=61.31 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHhcC--CceecCCCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHH
Q 025140 109 KSLYNTVAPLLDIMGK--SRFYLGDVGN------GAAMKLVVNMIMGSMMATFSEGLLHSEK------VGLDPNVLVEVV 174 (257)
Q Consensus 109 ~~~~~~~~~ll~~~~~--~~~~~G~~G~------a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~l 174 (257)
.+++.|+.+.++..-. ...+.|+.+. ++.+|.+.|.+.++.+.+++|.+.+.++ .++|...+.++.
T Consensus 278 ~av~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iW 357 (467)
T TIGR00873 278 ESVFARYLSSLKEERVAASKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIW 357 (467)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 3556677776655422 1234566442 8999999999999999999999999887 889999999999
Q ss_pred hhcC-CCchhhhccccccccC-CC-----CCCCc--hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHC
Q 025140 175 SQGA-ISAPMYSLKGPSMIES-LY-----PTAFP--LKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 239 (257)
Q Consensus 175 ~~~~-~~s~~~~~~~~~~~~~-~~-----~~~f~--~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 239 (257)
+.+. ..|++++...+.+.+. +. ++.|. +......++.++..+-+.|+|+|.+..++..|+.-...
T Consensus 358 r~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~ 431 (467)
T TIGR00873 358 RGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTA 431 (467)
T ss_pred CCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 9886 5888887655444221 11 12221 23334556888999999999999999999888876553
No 94
>PLN03139 formate dehydrogenase; Provisional
Probab=97.41 E-value=0.0012 Score=60.16 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=65.3
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
+.+.+.|+...+++.|++++||+|++++|..++.+.++. .+.++.+++|.++||++....-....+.+.+++.-+.
T Consensus 236 ~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 236 ELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN--KERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred hhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhC--HHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 344556888888999999999999999999999999873 3578889999999999999999999999999875443
No 95
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.19 E-value=0.0011 Score=55.00 Aligned_cols=119 Identities=22% Similarity=0.218 Sum_probs=73.9
Q ss_pred ccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC-----CHHH------HHHHHHHHHHc--C
Q 025140 15 YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV-----DGDT------SKLINGHIKAT--G 81 (257)
Q Consensus 15 ~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~-----~p~~------~~~la~~~~~~--G 81 (257)
...++.++++.+|+||+.||- +++.+++ .++...+ .|+++||.+.- .+.. .+..++.+++. +
T Consensus 50 ~~~~~~dA~~~aDVVvLAVP~-~a~~~v~---~~l~~~~-~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ 124 (211)
T COG2085 50 TGGSNEDAAALADVVVLAVPF-EAIPDVL---AELRDAL-GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG 124 (211)
T ss_pred ccCChHHHHhcCCEEEEeccH-HHHHhHH---HHHHHHh-CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCC
Confidence 356788999999999999996 5555566 4454444 49999999873 1111 11223333321 3
Q ss_pred CcEEE------ecCCCChHHhhcCceEEEecC-ChhHHHHHHHHHHHhcCCceecCCCchHHHHH
Q 025140 82 ASFLE------APVSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMK 139 (257)
Q Consensus 82 ~~~vd------apV~g~~~~a~~g~l~i~~gg-~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~K 139 (257)
.+.|- +...-.-..-. ++..+++.| |.++.+.+..+.+.+|-..+-+|+.-.+..+.
T Consensus 125 akVVkAFn~i~a~~l~~~~~~~-~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le 188 (211)
T COG2085 125 AKVVKAFNTIPAAVLADLAKPG-GRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPLENARILE 188 (211)
T ss_pred cchhhhhcccCHHHhccCCCcC-CceeEEEecCcHHHHHHHHHHHHhcCcceeeccccccccccc
Confidence 33332 22222211111 455555555 55789999999999998888899876666554
No 96
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.11 E-value=0.00098 Score=58.84 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=57.7
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
..++.|++++||+|++++|..++.+.++. .+.++.+++|.++||+|+..+-..+.+.+.+++.-.
T Consensus 164 ~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 164 YMEPEDIMKKSDFVLISLPLTDETRGMIN--SKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred cCCHHHHHhhCCEEEECCCCCchhhcCcC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence 57899999999999999999999998873 456788999999999999999999999999987533
No 97
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.07 E-value=0.0084 Score=56.11 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHhcC--CceecCCC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHH
Q 025140 109 KSLYNTVAPLLDIMGK--SRFYLGDV--------GNGAAMKLVVNMIMGSMMATFSEGLLHSEK----V--GLDPNVLVE 172 (257)
Q Consensus 109 ~~~~~~~~~ll~~~~~--~~~~~G~~--------G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~----~--Gld~~~~~~ 172 (257)
..+|.|..+.++.... ...+.|+. +.++.+|.+.|.+.++.+.+++|.+.+.++ + ++|...+.+
T Consensus 282 ~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~ 361 (470)
T PTZ00142 282 ASVDARNISALKEERTKASSHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIAR 361 (470)
T ss_pred HHHHHHHhhhhHHHHHHhccccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3455666666654422 12344543 689999999999999999999999998773 4 899999999
Q ss_pred HHhhcC-CCchhhhccccccccC-C-----CCCCCc--hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 025140 173 VVSQGA-ISAPMYSLKGPSMIES-L-----YPTAFP--LKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 237 (257)
Q Consensus 173 ~l~~~~-~~s~~~~~~~~~~~~~-~-----~~~~f~--~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 237 (257)
+.+.+. ..|++++...+.+... + +.+.|. +......++.++..+-+.|+|+|.+..++..|+.-.
T Consensus 362 iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~ 435 (470)
T PTZ00142 362 IWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYR 435 (470)
T ss_pred HhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 999886 5888887654443221 1 112221 223345568889999999999999999999666443
No 98
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.07 E-value=0.0013 Score=58.78 Aligned_cols=69 Identities=10% Similarity=-0.012 Sum_probs=59.0
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
.|.. ..++.|++++||+|++|+|..++.+.++. .+.++.+++|.++||+|+..+-....+.+.+++.-+
T Consensus 191 ~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~--~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i 259 (333)
T PRK13243 191 LGAE-YRPLEELLRESDFVSLHVPLTKETYHMIN--EERLKLMKPTAILVNTARGKVVDTKALVKALKEGWI 259 (333)
T ss_pred cCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccC--HHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCe
Confidence 3544 45899999999999999999999998873 357788999999999999999999999999986543
No 99
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.06 E-value=0.0015 Score=58.45 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=60.3
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc--EEEe
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FLEA 87 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~--~vda 87 (257)
+....+++.|++++||+|++|+|.....+.++ + .+.++.+++|.++||+|+..+-....+.+.+.+..+. .+|.
T Consensus 187 ~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li-~-~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV 262 (332)
T PRK08605 187 YVDYKDTIEEAVEGADIVTLHMPATKYNHYLF-N-ADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDT 262 (332)
T ss_pred hccccCCHHHHHHhCCEEEEeCCCCcchhhhc-C-HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEec
Confidence 45566799999999999999999988877544 3 3467788999999999999999999999999865443 2554
No 100
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.92 E-value=0.041 Score=48.86 Aligned_cols=109 Identities=9% Similarity=0.025 Sum_probs=68.2
Q ss_pred hhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE-
Q 025140 7 AFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL- 85 (257)
Q Consensus 7 ~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v- 85 (257)
.+.+.|.+.. +..|++++||+|++++|+..+...++ +++.+.+.++.+|.-..-++...-+. .+ ..+.+.+
T Consensus 42 ~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~ei~~~l~~g~iVs~aaG~~i~~~~~---~~-~~~~~Vvr 113 (314)
T TIGR00465 42 KATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---AEIQPLLKEGKTLGFSHGFNIHFVQI---VP-PKDVDVVM 113 (314)
T ss_pred HHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---HHHHhhCCCCcEEEEeCCccHhhccc---cC-CCCCcEEE
Confidence 3446687654 68999999999999999875666555 45666677777665555555554322 22 2233333
Q ss_pred EecCCCChHHh-------hcCceEEE-ecC--ChhHHHHHHHHHHHhcCC
Q 025140 86 EAPVSGSKKPA-------EDGQLIFL-AAG--DKSLYNTVAPLLDIMGKS 125 (257)
Q Consensus 86 dapV~g~~~~a-------~~g~l~i~-~gg--~~~~~~~~~~ll~~~~~~ 125 (257)
-+| -+|... ..|-..++ ++- +.+..+.+..+++.+|..
T Consensus 114 vmP--n~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 114 VAP--KGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred ECC--CCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 222 233332 45554444 332 456778899999999986
No 101
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=96.89 E-value=0.05 Score=46.49 Aligned_cols=156 Identities=12% Similarity=0.132 Sum_probs=102.8
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHH-HHHHHHHHHHc----
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-SKLINGHIKAT---- 80 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~-~~~la~~~~~~---- 80 (257)
+.+-.+|.+..++-.|++++.++.++..|=....-.+. +.|+++++.|.+|.++.|++|-. -..+...++-+
T Consensus 63 ~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dV 139 (340)
T COG4007 63 KRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDV 139 (340)
T ss_pred HHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhc
Confidence 34667899999999999999999999999887776666 67889999999999999998854 34455555432
Q ss_pred CCc-EEEecCCCChHHhhcCceEEEec--------CChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHH
Q 025140 81 GAS-FLEAPVSGSKKPAEDGQLIFLAA--------GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 151 (257)
Q Consensus 81 G~~-~vdapV~g~~~~a~~g~l~i~~g--------g~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~ 151 (257)
|+. +=-+.|-|.|. ....+..| ..++..+++.++.+..|+.++.+ +..--+.+-=...++....++
T Consensus 140 GvssmHPAgvPGtp~----h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~-padv~s~VaDmg~lvtav~l~ 214 (340)
T COG4007 140 GVSSMHPAGVPGTPQ----HGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVL-PADVVSAVADMGVLVTAVALS 214 (340)
T ss_pred CccccCCCCCCCCCC----CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEec-CHHHHHHhhhhHHHHHHHHHH
Confidence 332 22233444443 33343332 13456788999999999976555 332222222223345566677
Q ss_pred HHHHHHHHHH-HcCCCHHH
Q 025140 152 TFSEGLLHSE-KVGLDPNV 169 (257)
Q Consensus 152 ~~~Ea~~la~-~~Gld~~~ 169 (257)
++.+-+..+. -.|.+.+.
T Consensus 215 gvldyy~Vg~qIi~AP~eM 233 (340)
T COG4007 215 GVLDYYYVGTQIIGAPKEM 233 (340)
T ss_pred HHHHHHHHHHHHhCCcHHH
Confidence 7777777766 35555543
No 102
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.66 E-value=0.00094 Score=48.20 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=37.9
Q ss_pred hhcCccccC-CHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC
Q 025140 9 YYSRCRYQP-SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 64 (257)
Q Consensus 9 ~~~Ga~~~~-s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST 64 (257)
...|..... +..|+++++|+||+|+| |.++.+++ +.+ ....+++++|+.+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~advvilav~-p~~~~~v~---~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 44 KEYGVQATADDNEEAAQEADVVILAVK-PQQLPEVL---SEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHH---HHH-HHHHTTSEEEEEST
T ss_pred HhhccccccCChHHhhccCCEEEEEEC-HHHHHHHH---HHH-hhccCCCEEEEeCC
Confidence 334666666 89999999999999999 46677787 455 55678999999763
No 103
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.56 E-value=0.0045 Score=58.79 Aligned_cols=78 Identities=12% Similarity=-0.001 Sum_probs=64.9
Q ss_pred hhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE--E
Q 025140 8 FYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF--L 85 (257)
Q Consensus 8 ~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~--v 85 (257)
..+.|.+..+++.|++++||+|++++|..++.+.++ + .+.++.+++|.++||++....-....+.+.+++..+.. +
T Consensus 176 ~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li-~-~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaL 253 (525)
T TIGR01327 176 AEQLGVELVDDLDELLARADFITVHTPLTPETRGLI-G-AEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAAL 253 (525)
T ss_pred HHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc-C-HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEE
Confidence 345577777899999999999999999999998887 3 35677899999999999999988899999998765543 5
Q ss_pred Ee
Q 025140 86 EA 87 (257)
Q Consensus 86 da 87 (257)
|.
T Consensus 254 DV 255 (525)
T TIGR01327 254 DV 255 (525)
T ss_pred ec
Confidence 54
No 104
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.41 E-value=0.19 Score=44.51 Aligned_cols=204 Identities=16% Similarity=0.123 Sum_probs=115.4
Q ss_pred HHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEec-----CCCCh
Q 025140 19 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP-----VSGSK 93 (257)
Q Consensus 19 ~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdap-----V~g~~ 93 (257)
..+....+|+||+++-+.+ +++++ ..+...+.+.+.|+-+-. .......+.+..... +++-+= +..+|
T Consensus 61 ~~~~~~~~Dlviv~vKa~q-~~~al---~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~--~il~G~~~~~a~~~~~ 133 (307)
T COG1893 61 DAEALGPADLVIVTVKAYQ-LEEAL---PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKE--TVLGGVTTHGAVREGP 133 (307)
T ss_pred ChhhcCCCCEEEEEecccc-HHHHH---HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcc--eEEEEEeeeeeEecCC
Confidence 3455568999999998744 44555 445555555554443332 233333555555443 222211 11122
Q ss_pred HH---hhcCce--EEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHH---------------------
Q 025140 94 KP---AEDGQL--IFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG--------------------- 147 (257)
Q Consensus 94 ~~---a~~g~l--~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~--------------------- 147 (257)
.. ...|.. ..+.|++.+.++.+.++|+.-+-++.+...+-...-.|++.|..+.
T Consensus 134 g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~ 213 (307)
T COG1893 134 GHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARA 213 (307)
T ss_pred ceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHH
Confidence 11 122222 2333455567788888887777777666667788888888876544
Q ss_pred HHHHHHHHHHHHHHHcC--CCHHH---HHHHHhhc--CCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcC
Q 025140 148 SMMATFSEGLLHSEKVG--LDPNV---LVEVVSQG--AISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVS 220 (257)
Q Consensus 148 ~~~~~~~Ea~~la~~~G--ld~~~---~~~~l~~~--~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g 220 (257)
.....+.|....+++.| ++.+. +....... ...|.|++.. ..+... -++. =...+++.++++|
T Consensus 214 l~~~~~~E~~~v~~~~g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl----~~gr~t---Eid~---i~G~vv~~a~~~g 283 (307)
T COG1893 214 LIRALVAEVVAVARAEGVELPEEVVERVLAVIRATDAENYSSMLQDL----EKGRPT---EIDA---INGAVVRLAKKHG 283 (307)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcccccCchHHHHH----HcCCcc---cHHH---HhhHHHHHHHHhC
Confidence 33456788888888888 55533 33333333 1222222221 111000 0111 1345689999999
Q ss_pred CCcHHHHHHHHHHHHHHHC
Q 025140 221 QSTPIAAAANELYKVAKSH 239 (257)
Q Consensus 221 ~~~p~~~~~~~~~~~a~~~ 239 (257)
++.|..+...++.+.....
T Consensus 284 i~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 284 LATPVNDTLYALLKAKEAE 302 (307)
T ss_pred CCCcHHHHHHHHHHHHHHh
Confidence 9999999999988876553
No 105
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.35 E-value=0.0052 Score=53.96 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=41.1
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...|+++ ..+++|++++||+||+|++++..++.++ +.+|.++||+|+..
T Consensus 179 L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~---------ik~GaiVIDvgin~ 234 (301)
T PRK14194 179 LLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADW---------LKPGAVVIDVGINR 234 (301)
T ss_pred HHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhh---------ccCCcEEEEecccc
Confidence 45566654 3579999999999999999999887775 57899999999765
No 106
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.20 E-value=0.0028 Score=56.28 Aligned_cols=66 Identities=9% Similarity=0.133 Sum_probs=52.1
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
...++++.+++++||+|++|.+... .++.+ +.+.+|+ +||+++.++...+++...+.+++..|+|-
T Consensus 177 ~~~~~~~~~av~~aDIVi~aT~s~~---pvl~~-----~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 177 AEVVTDLEAAVRQADIISCATLSTE---PLVRG-----EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred eEEeCCHHHHHhcCCEEEEeeCCCC---CEecH-----HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 6678999999999999988887652 33321 3356777 89999999999999998888888778885
No 107
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.10 E-value=0.0042 Score=47.65 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=37.8
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCccccc--CCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASG--MGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~--l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
+.....++.|+++++|++|+++||+ ++.+|. +++... ..+|++|+=||-..+... -+.++++|+.
T Consensus 55 ~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va---~~La~~~~~~~g~iVvHtSGa~~~~v---L~p~~~~Ga~ 121 (127)
T PF10727_consen 55 GAGAILDLEEILRDADLVFIAVPDD-AIAEVA---EQLAQYGAWRPGQIVVHTSGALGSDV---LAPARERGAI 121 (127)
T ss_dssp TT-----TTGGGCC-SEEEE-S-CC-HHHHHH---HHHHCC--S-TT-EEEES-SS--GGG---GHHHHHTT-E
T ss_pred ccccccccccccccCCEEEEEechH-HHHHHH---HHHHHhccCCCCcEEEECCCCChHHh---hhhHHHCCCe
Confidence 5566778889999999999999996 667777 556554 678999999987665543 4446666664
No 108
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=95.99 E-value=0.008 Score=45.46 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=30.1
Q ss_pred hcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 24 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 24 ~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
.++|+||+|+|++...+.+. .+...+.+|+++||+|+.-
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~----~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAP----LLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHH----HHHhhhcCCCEEEECCccc
Confidence 58999999999987766543 2334567999999999754
No 109
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.97 E-value=0.012 Score=55.92 Aligned_cols=77 Identities=13% Similarity=0.043 Sum_probs=63.3
Q ss_pred hhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc--EE
Q 025140 8 FYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FL 85 (257)
Q Consensus 8 ~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~--~v 85 (257)
....|.+.+ ++.|++++||+|++|+|..++.+.++. .+.++.+++|.++||+|....-....+.+.+++.-+. .+
T Consensus 178 ~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaL 254 (526)
T PRK13581 178 AAQLGVELV-SLDELLARADFITLHTPLTPETRGLIG--AEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAAL 254 (526)
T ss_pred HHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEE
Confidence 345577766 899999999999999999999998873 3577889999999999999998889999999865332 36
Q ss_pred Ee
Q 025140 86 EA 87 (257)
Q Consensus 86 da 87 (257)
|.
T Consensus 255 DV 256 (526)
T PRK13581 255 DV 256 (526)
T ss_pred ec
Confidence 64
No 110
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.95 E-value=0.02 Score=50.78 Aligned_cols=66 Identities=5% Similarity=0.043 Sum_probs=56.2
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
.+++.|++++||+|++++|..++.+.++. .+.++.+++|.++||.+-...=.-..+.+.+++..+.
T Consensus 181 ~~~l~e~l~~aDvvv~~lPlt~~T~~li~--~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 181 REELSAFLSQTRVLINLLPNTPETVGIIN--QQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred cccHHHHHhcCCEEEECCCCCHHHHHHhH--HHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence 46889999999999999999999998874 3577889999999999988887778888888876444
No 111
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.92 E-value=0.39 Score=39.72 Aligned_cols=99 Identities=12% Similarity=0.192 Sum_probs=59.9
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
+.|...|-.+. +++||+||+|+|-. ...+++ +.+. .+++|.+++.-.-. +.+.+|+
T Consensus 18 ~~~~~~g~~v~------~~~~DlVilavPv~-~~~~~i---~~~~------~~v~Dv~SvK~~i~--------~~~~~~v 73 (197)
T PRK06444 18 SILDDNGLGVY------IKKADHAFLSVPID-AALNYI---ESYD------NNFVEISSVKWPFK--------KYSGKIV 73 (197)
T ss_pred HHHHhCCCEEE------ECCCCEEEEeCCHH-HHHHHH---HHhC------CeEEeccccCHHHH--------HhcCCEE
Confidence 34555665543 67999999999964 444555 2221 37999998877432 1244666
Q ss_pred Ee-cCCCChHHhhcC--ceEEEec--CChhHHHHHHHHHHHhcCCceecCC
Q 025140 86 EA-PVSGSKKPAEDG--QLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGD 131 (257)
Q Consensus 86 da-pV~g~~~~a~~g--~l~i~~g--g~~~~~~~~~~ll~~~~~~~~~~G~ 131 (257)
-. |++| |..+..+ ...+++. .+++.++.++.+++ |.+++.+.+
T Consensus 74 g~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~ 121 (197)
T PRK06444 74 SIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFVEMTA 121 (197)
T ss_pred ecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHHHHHc--CCEEEEeCH
Confidence 44 7776 4333332 2333342 34456677888888 666777744
No 112
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.86 E-value=0.025 Score=50.56 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=56.7
Q ss_pred cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 14 RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 14 ~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
+..+++.|++++||+|++|+|...+.+..+. +++++.+++|.++||.+-...-....+.+.+++.-+.
T Consensus 187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~ 254 (330)
T PRK12480 187 TYKDSVKEAIKDADIISLHVPANKESYHLFD--KAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL 254 (330)
T ss_pred hccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee
Confidence 4567899999999999999999998887774 4677889999999999988877778888888765443
No 113
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.73 E-value=0.014 Score=51.79 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=40.9
Q ss_pred hhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcC
Q 025140 8 FYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS 63 (257)
Q Consensus 8 ~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~S 63 (257)
+.+.|.+. .|+.|++++||+|++++|++++ ++++. +++++.+.+|++++-.-
T Consensus 55 A~~~G~~v-~sl~Eaak~ADVV~llLPd~~t-~~V~~--~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 55 AKADGFEV-MSVSEAVRTAQVVQMLLPDEQQ-AHVYK--AEVEENLREGQMLLFSH 106 (335)
T ss_pred HHHcCCEE-CCHHHHHhcCCEEEEeCCChHH-HHHHH--HHHHhcCCCCCEEEECC
Confidence 44458765 4999999999999999999665 77874 46888899999876543
No 114
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.71 E-value=0.23 Score=49.05 Aligned_cols=143 Identities=10% Similarity=0.059 Sum_probs=88.8
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcC-CCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATGASFLEAPVSG 91 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~S-T~~p~~~~~la~~~~~~G~~~vdapV~g 91 (257)
.+..++. +++++||+||=+++.+-+++.-++ ..+-+...+++++...| +.+++ +|++.+... -+++-.=.+.
T Consensus 378 i~~~~~~-~~~~~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i~---~la~~~~~p-~r~ig~Hff~ 450 (708)
T PRK11154 378 ISGTTDY-RGFKHADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPIG---QIAAAAARP-EQVIGLHYFS 450 (708)
T ss_pred EEEeCCh-HHhccCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHHhcCcc-cceEEEecCC
Confidence 3455666 678999999999999988876655 34445556666665443 33443 344444321 2333322222
Q ss_pred ChHHhhcCceE-EEec--CChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 025140 92 SKKPAEDGQLI-FLAA--GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDP 167 (257)
Q Consensus 92 ~~~~a~~g~l~-i~~g--g~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~ 167 (257)
.+... .++ |+.| .++++++.+..+++.+++.++.+.+ +| .+.|= .....+.|++.+.++ |+++
T Consensus 451 P~~~~---~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nR---l~~~~~~EA~~lv~e-Gv~~ 517 (708)
T PRK11154 451 PVEKM---PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNR---ILAPYINEAARLLLE-GEPI 517 (708)
T ss_pred ccccC---ceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHH---HHHHHHHHHHHHHHc-CCCH
Confidence 22211 233 3333 4678999999999999998888866 55 23333 334567888888776 7888
Q ss_pred HHHHHHHh
Q 025140 168 NVLVEVVS 175 (257)
Q Consensus 168 ~~~~~~l~ 175 (257)
+.+-.++.
T Consensus 518 ~dID~a~~ 525 (708)
T PRK11154 518 EHIDAALV 525 (708)
T ss_pred HHHHHHHH
Confidence 87766654
No 115
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.65 E-value=0.28 Score=48.52 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=90.2
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEc-CCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGASFLEAPVSG 91 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~-ST~~p~~~~~la~~~~~~G~~~vdapV~g 91 (257)
.++..+. +.+++||+||=+++.+-+++.-++ ..+-....++.++... ||.+++ +|++.+.. --+++-.=.+.
T Consensus 381 i~~~~~~-~~~~~aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~---~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 381 IRPTLDY-AGFERVDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISIS---LLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred eEEeCCH-HHhcCCCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCC-CccEEEEecCC
Confidence 4456676 567899999999999998876665 3444445556555433 334443 44444432 22333322222
Q ss_pred ChHHhhcCceE-EEec--CChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 025140 92 SKKPAEDGQLI-FLAA--GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDP 167 (257)
Q Consensus 92 ~~~~a~~g~l~-i~~g--g~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~ 167 (257)
.|... .++ |+.| .++++++++..+++.+++.++.+.+ +| .+.|=+. ...+.|++.+.++ |.++
T Consensus 454 P~~~~---~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~---~~~~~ea~~lv~~-Ga~~ 520 (715)
T PRK11730 454 PVHRM---PLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVL---FPYFAGFSQLLRD-GADF 520 (715)
T ss_pred ccccc---ceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHH---HHHHHHHHHHHHc-CCCH
Confidence 22221 223 3333 3678999999999999999888876 66 3445443 3346788888775 4888
Q ss_pred HHHHHHHhhcC
Q 025140 168 NVLVEVVSQGA 178 (257)
Q Consensus 168 ~~~~~~l~~~~ 178 (257)
+.+-.++..+.
T Consensus 521 e~ID~a~~~~~ 531 (715)
T PRK11730 521 RQIDKVMEKQF 531 (715)
T ss_pred HHHHHHHHhhC
Confidence 88877776543
No 116
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.62 E-value=0.24 Score=43.76 Aligned_cols=203 Identities=14% Similarity=0.046 Sum_probs=106.5
Q ss_pred HhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhh-----
Q 025140 23 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE----- 97 (257)
Q Consensus 23 ~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~----- 97 (257)
....|+||+|+-..+ +.+++ +.+...+.++++||-+-+. ...-..+.+.+.+ -+.+.+-+.-+.....
T Consensus 68 ~~~~D~viv~vK~~~-~~~al---~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~--~~v~~g~~~~ga~~~~pg~v~ 140 (305)
T PRK05708 68 AEPIHRLLLACKAYD-AEPAV---ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPH--ARCIFASSTEGAFRDGDWRVV 140 (305)
T ss_pred ccccCEEEEECCHHh-HHHHH---HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCC--CcEEEEEeeeceecCCCCEEE
Confidence 346899999999864 55565 4555556666666544322 1222234444322 1233333322111111
Q ss_pred -cCceEEEecC-ChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHH------------------HHHHHHHHHH
Q 025140 98 -DGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG------------------SMMATFSEGL 157 (257)
Q Consensus 98 -~g~l~i~~gg-~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~------------------~~~~~~~Ea~ 157 (257)
.+.-.+.+|. +.+..+++..+|..-+-...+...+-...-.|++.|.... .....+.|..
T Consensus 141 ~~~~g~~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~ 220 (305)
T PRK05708 141 FAGHGFTWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELS 220 (305)
T ss_pred EeceEEEEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHH
Confidence 2222344553 2344466666777655544444446667777877765321 2346678999
Q ss_pred HHHHHcCCCH--HHHHHHHhh----cC-CCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 025140 158 LHSEKVGLDP--NVLVEVVSQ----GA-ISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAAN 230 (257)
Q Consensus 158 ~la~~~Gld~--~~~~~~l~~----~~-~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~ 230 (257)
.++++.|++. +.+.+.+.. .. ..|.|++. +.+|.- .-++.. ...+++.++++|+|+|..+.+.
T Consensus 221 ~va~a~G~~~~~~~~~~~~~~~~~~~~~~~sSM~qD----~~~gR~---tEid~i---~G~vvr~a~~~Gv~~P~~~~l~ 290 (305)
T PRK05708 221 ELLRRCGQPAAAANLHEEVQRVIQATAANYSSMYQD----VRAGRR---TEISYL---LGYACRAADRHGLPLPRLQHLQ 290 (305)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHhccCCCcHHHHH----HHcCCc---eeehhh---hhHHHHHHHHcCCCCchHHHHH
Confidence 9999999753 223333221 11 11122211 111100 001111 3456899999999999999998
Q ss_pred HHHHHHHH-CCCC
Q 025140 231 ELYKVAKS-HGLS 242 (257)
Q Consensus 231 ~~~~~a~~-~g~g 242 (257)
+....... .|.+
T Consensus 291 ~~v~~~~~~~~~~ 303 (305)
T PRK05708 291 QRLVAHLRARGLP 303 (305)
T ss_pred HHHHHHHHhcCCC
Confidence 77666554 4543
No 117
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=95.60 E-value=0.27 Score=48.46 Aligned_cols=143 Identities=10% Similarity=0.065 Sum_probs=87.3
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEc-CCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGASFLEAPVSG 91 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~-ST~~p~~~~~la~~~~~~G~~~vdapV~g 91 (257)
.+..++. +++++||+||=++|.+-+++.-++ ..+-+...++.++... ||.++. +|++.+... -+++-.=-+-
T Consensus 373 i~~~~~~-~~~~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i~---~la~~~~~p-~r~~g~Hffn 445 (699)
T TIGR02440 373 ITGTTDY-RGFKDVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPIG---QIAAAASRP-ENVIGLHYFS 445 (699)
T ss_pred eEEeCCh-HHhccCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHH---HHHHhcCCc-ccEEEEecCC
Confidence 4456676 578999999999999988876555 3444445555554432 334444 344444321 2333222222
Q ss_pred ChHHhhcCceE-EEec--CChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 025140 92 SKKPAEDGQLI-FLAA--GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDP 167 (257)
Q Consensus 92 ~~~~a~~g~l~-i~~g--g~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~ 167 (257)
.|... .++ |+.| .++++++++..+++.+++.++.+.+ +| .+.|=+ ....+.|++.+.+ .|+++
T Consensus 446 P~~~~---~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl---~~~~~~Ea~~l~~-~G~~~ 512 (699)
T TIGR02440 446 PVEKM---PLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG------FYVNRI---LAPYMNEAARLLL-EGEPV 512 (699)
T ss_pred ccccC---ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc------hHHHHH---HHHHHHHHHHHHH-CCCCH
Confidence 22111 233 3333 4678999999999999999988866 55 233333 3456788888776 56788
Q ss_pred HHHHHHHh
Q 025140 168 NVLVEVVS 175 (257)
Q Consensus 168 ~~~~~~l~ 175 (257)
+.+-.++.
T Consensus 513 ~dID~a~~ 520 (699)
T TIGR02440 513 EHIDKALV 520 (699)
T ss_pred HHHHHHHH
Confidence 87766664
No 118
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.50 E-value=0.012 Score=46.75 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=44.4
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC-CHHHHHHHHHHHHH
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKA 79 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~-~p~~~~~la~~~~~ 79 (257)
..++.+++.++++++|+||+++|. ...++++ +.+.+.+.+++++|.++-. .+++...+.+.+++
T Consensus 56 ~i~~t~dl~~a~~~ad~IiiavPs-~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~ 120 (157)
T PF01210_consen 56 NIKATTDLEEALEDADIIIIAVPS-QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEE 120 (157)
T ss_dssp TEEEESSHHHHHTT-SEEEE-S-G-GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHH
T ss_pred ccccccCHHHHhCcccEEEecccH-HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHH
Confidence 345678999999999999999997 4567888 6777888899999988854 35555555555544
No 119
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.40 E-value=0.039 Score=47.96 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=51.0
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
...++++.|+++++|+|++|.|++.. .++. .. .+..|+-++..|+..+...+++.+.++++|.++
T Consensus 55 ~~~~~~~eell~~~D~Vvi~tp~~~h-~e~~---~~---aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 55 PPPVVPLDQLATHADIVVEAAPASVL-RAIV---EP---VLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred CcccCCHHHHhcCCCEEEECCCcHHH-HHHH---HH---HHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 35789999999999999999998654 4443 22 345677777778887888899999999999875
No 120
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.38 E-value=1.1 Score=44.03 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=72.7
Q ss_pred EEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe-cCCCChHH----h----hcC
Q 025140 29 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKP----A----EDG 99 (257)
Q Consensus 29 vi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda-pV~g~~~~----a----~~g 99 (257)
||+|+|- ....+++ +.+.+.+.++.+|.|.+++.-.-.+.+.+.+.....+||-+ |+.|.... + -.|
T Consensus 1 vila~Pv-~~~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPV-AQTGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG 76 (673)
T ss_pred CEEEcCH-HHHHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence 6889984 5666677 56777788999999999999888887776654333457655 66665321 1 256
Q ss_pred ceEEEe---cCChhHHHHHHHHHHHhcCCceecCCC
Q 025140 100 QLIFLA---AGDKSLYNTVAPLLDIMGKSRFYLGDV 132 (257)
Q Consensus 100 ~l~i~~---gg~~~~~~~~~~ll~~~~~~~~~~G~~ 132 (257)
...+++ ..+.+.++.++.+++.+|.+++.+.+.
T Consensus 77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~ 112 (673)
T PRK11861 77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAE 112 (673)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH
Confidence 666776 236678899999999999998888653
No 121
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.32 E-value=0.048 Score=50.23 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=59.0
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
+.+.+.++.|+++.||+|++++|-.++.+..+ + ...+..+++|.++||++....-....+.+.+++..+.
T Consensus 190 ~~~~~~~l~ell~~sDiVslh~Plt~~T~~li-~-~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 190 NARQVGSLEELLAQSDVVSLHVPETPSTKNMI-G-AEELALMKPGAILINASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred CceecCCHHHHHhhCCEEEEcCCCChHHhhcc-C-HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence 45567799999999999999999988888776 3 3467789999999999999998888999999875443
No 122
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.30 E-value=0.022 Score=49.98 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=40.1
Q ss_pred hhhcCccc--cC----CHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY--QP----SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~--~~----s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...|+++ +. +++|++++||+||+|++++..+++++ +.+|++|||+++..
T Consensus 178 L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~---------lk~GavVIDvGin~ 233 (296)
T PRK14188 178 LLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDW---------IKPGATVIDVGINR 233 (296)
T ss_pred HHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchhe---------ecCCCEEEEcCCcc
Confidence 55566643 23 68999999999999999999877665 57899999999754
No 123
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.95 E-value=0.55 Score=46.48 Aligned_cols=143 Identities=17% Similarity=0.156 Sum_probs=91.5
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEc-CCCCHHHHHHHHHHHHH----cCCcEEEe
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKA----TGASFLEA 87 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~-ST~~p~~~~~la~~~~~----~G~~~vda 87 (257)
.+...+. +.+++||+||=+++-+-+++.-++ ..+-+...++.++... ||.+++ +|++.+.. -|.||. .
T Consensus 381 i~~~~~~-~~~~~aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i~---~ia~~~~~p~r~ig~Hff-~ 453 (714)
T TIGR02437 381 ITPTLSY-AGFDNVDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISIS---LLAKALKRPENFCGMHFF-N 453 (714)
T ss_pred eEEeCCH-HHhcCCCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEecC-C
Confidence 3455666 567899999999999998876665 3444455566655443 334443 34444432 144543 2
Q ss_pred cCCCChHHhhcCceEEEe-c--CChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 025140 88 PVSGSKKPAEDGQLIFLA-A--GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV 163 (257)
Q Consensus 88 pV~g~~~~a~~g~l~i~~-g--g~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 163 (257)
|+.-- .|+=++ | .++++++++..+++.+++.++.+.+ +| .+.|=+. ...+.|++.+.+.
T Consensus 454 P~~~~-------~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl~---~~~~~ea~~l~~e- 516 (714)
T TIGR02437 454 PVHRM-------PLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVL---FPYFGGFSKLLRD- 516 (714)
T ss_pred CcccC-------ceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHHH---HHHHHHHHHHHHC-
Confidence 22211 233233 3 3568899999999999999888876 66 4445443 3456888888864
Q ss_pred CCCHHHHHHHHhhcCC
Q 025140 164 GLDPNVLVEVVSQGAI 179 (257)
Q Consensus 164 Gld~~~~~~~l~~~~~ 179 (257)
|.+++.+-.++..+.+
T Consensus 517 G~~~~~ID~a~~~~~G 532 (714)
T TIGR02437 517 GADFVRIDKVMEKQFG 532 (714)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 5899998888766543
No 124
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=94.87 E-value=0.82 Score=40.42 Aligned_cols=145 Identities=13% Similarity=0.140 Sum_probs=89.8
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC--CCHHHHHHHHHHHHHcCCcEEEecCCCCh
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST--VDGDTSKLINGHIKATGASFLEAPVSGSK 93 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST--~~p~~~~~la~~~~~~G~~~vdapV~g~~ 93 (257)
..++. ++++||+||-.++-.-+++.-+| ..+-. ..+...|+-++| +++.. +++... +--+++-.=-+..|
T Consensus 74 ~~~~~-~l~~~DlVIEAv~E~levK~~vf--~~l~~-~~~~~aIlASNTSsl~it~---ia~~~~-rper~iG~HFfNP~ 145 (307)
T COG1250 74 TTDLA-ALKDADLVIEAVVEDLELKKQVF--AELEA-LAKPDAILASNTSSLSITE---LAEALK-RPERFIGLHFFNPV 145 (307)
T ss_pred cCchh-HhccCCEEEEeccccHHHHHHHH--HHHHh-hcCCCcEEeeccCCCCHHH---HHHHhC-CchhEEEEeccCCC
Confidence 44444 78999999999999999876555 23333 334444544444 44443 344342 21222222222222
Q ss_pred HHhhcCceEEEecC---ChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 025140 94 KPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNV 169 (257)
Q Consensus 94 ~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~ 169 (257)
.- -.|+=++.| ++++++++..+.+.+++.++...+ +| .+.|= .....+.|++.+..+-..+++.
T Consensus 146 ~~---m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NR---il~~~~~eA~~l~~eGva~~e~ 213 (307)
T COG1250 146 PL---MPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNR---LLAALLNEAIRLLEEGVATPEE 213 (307)
T ss_pred Cc---ceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHh---HHHHHHHHHHHHHHhCCCCHHH
Confidence 21 234434444 578999999999999977644455 66 23333 3356678999999998899999
Q ss_pred HHHHHhhcCCC
Q 025140 170 LVEVVSQGAIS 180 (257)
Q Consensus 170 ~~~~l~~~~~~ 180 (257)
+-.++..+.+.
T Consensus 214 ID~~~~~~~G~ 224 (307)
T COG1250 214 IDAAMRQGLGL 224 (307)
T ss_pred HHHHHHhccCC
Confidence 98888876544
No 125
>PLN02928 oxidoreductase family protein
Probab=94.77 E-value=0.066 Score=48.22 Aligned_cols=66 Identities=11% Similarity=0.016 Sum_probs=54.5
Q ss_pred ccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 15 YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 15 ~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
...++.|++++||+|++++|.....+..+. .+.+..+++|.++||++-...=....+.+.+.+.-+
T Consensus 216 ~~~~L~ell~~aDiVvl~lPlt~~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 216 GHEDIYEFAGEADIVVLCCTLTKETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL 281 (347)
T ss_pred cccCHHHHHhhCCEEEECCCCChHhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 356899999999999999999888887763 356778999999999998777777788888876534
No 126
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.68 E-value=0.15 Score=45.45 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=58.9
Q ss_pred hcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc--EEEe
Q 025140 10 YSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FLEA 87 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~--~vda 87 (257)
..|.+. .|+.|++++||+|++++|-.++.+..+ + ...++.+++|.++||++-...=.-..+.+.+++.-+. .+|.
T Consensus 186 ~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li-~-~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDV 262 (323)
T PRK15409 186 RFNARY-CDLDTLLQESDFVCIILPLTDETHHLF-G-AEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDV 262 (323)
T ss_pred hcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhcc-C-HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeec
Confidence 345554 489999999999999999999988776 3 3467789999999999988887778888888764332 3553
No 127
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.61 E-value=0.037 Score=48.27 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=36.5
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
+.++++.+++||+||++++++..++..+ +.+|.++||+++..
T Consensus 192 t~~l~~~~~~ADIVI~avg~~~~v~~~~---------ik~GavVIDvgin~ 233 (284)
T PRK14179 192 TRNLAEVARKADILVVAIGRGHFVTKEF---------VKEGAVVIDVGMNR 233 (284)
T ss_pred CCCHHHHHhhCCEEEEecCccccCCHHH---------ccCCcEEEEeccee
Confidence 4678999999999999999999887665 57899999999765
No 128
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.46 E-value=0.11 Score=46.15 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=55.9
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc-EEEe
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLEA 87 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~-~vda 87 (257)
..++.|+++.||+|++++|-.++.+..+- +..++.+++|.++||.+-...=....+.+.+++.-+. .+|.
T Consensus 187 ~~~l~ell~~sDvv~lh~Plt~~T~~li~--~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV 257 (311)
T PRK08410 187 RVSLEELLKTSDIISIHAPLNEKTKNLIA--YKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDV 257 (311)
T ss_pred eecHHHHhhcCCEEEEeCCCCchhhcccC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEec
Confidence 45899999999999999999888877663 3456789999999999988887778888888765443 2444
No 129
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=94.23 E-value=0.67 Score=46.02 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=89.6
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEE-EcCCCCHHHHHHHHHHHHH----cCCcEEE
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLE 86 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~iv-d~ST~~p~~~~~la~~~~~----~G~~~vd 86 (257)
..+...+. +++++||+||=+++.+-+++.-++ ..+-+...++.++. |+||.+++. |++.+.. -|.||..
T Consensus 402 ~i~~~~~~-~~~~~aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~ig~Hff~ 475 (737)
T TIGR02441 402 NLTPTLDY-SGFKNADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALPIKD---IAAVSSRPEKVIGMHYFS 475 (737)
T ss_pred CeEEeCCH-HHhccCCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCccceEEEeccC
Confidence 34456666 467899999999999999886665 34444555666554 445555554 4444432 2455532
Q ss_pred ecCCCChHHhhcCceE-EEec--CChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025140 87 APVSGSKKPAEDGQLI-FLAA--GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEK 162 (257)
Q Consensus 87 apV~g~~~~a~~g~l~-i~~g--g~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 162 (257)
|+.-- .|+ |+.| .++++++.+..+++.+++.++.+++ +| .+.|=+. ...+.|++.+.+.
T Consensus 476 -P~~~m-------~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~---~~~~~ea~~lv~e 538 (737)
T TIGR02441 476 -PVDKM-------QLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCL---GPMLAEVIRLLQE 538 (737)
T ss_pred -CcccC-------ceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHH---HHHHHHHHHHHHc
Confidence 22211 233 3333 4678999999999999999888877 66 3444433 4567888887754
Q ss_pred cCCCHHHHHHHHh
Q 025140 163 VGLDPNVLVEVVS 175 (257)
Q Consensus 163 ~Gld~~~~~~~l~ 175 (257)
|++++++-.++.
T Consensus 539 -Gv~~~~ID~a~~ 550 (737)
T TIGR02441 539 -GVDPKKLDKLTT 550 (737)
T ss_pred -CCCHHHHHHHHH
Confidence 788888766653
No 130
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=94.22 E-value=0.61 Score=35.96 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=45.3
Q ss_pred EEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HHHHH
Q 025140 102 IFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM---KLVVNMIMGSMMATFSEGLLHSEKVGLDPNV----LVEVV 174 (257)
Q Consensus 102 ~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~---Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~----~~~~l 174 (257)
++.+-||++..+.++.+++.+|.+++.+.+......- =+++|++ ...+..+..+.++.|+|.+. +..++
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~----~~L~~~a~~ll~~~gi~~~~a~~~L~PLi 78 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFL----VALYALAAELLEQAGIDFEEALEALLPLI 78 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTT-SHHH--HHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhH----HHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 3445569999999999999999999888543322211 1344544 34556677899999999954 54444
Q ss_pred hh
Q 025140 175 SQ 176 (257)
Q Consensus 175 ~~ 176 (257)
..
T Consensus 79 ~~ 80 (132)
T PF10728_consen 79 RE 80 (132)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 131
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.20 E-value=0.029 Score=48.58 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=45.9
Q ss_pred CCHHHH-HhcCCEEEEecCChH--HHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEec
Q 025140 17 PSPDEV-AASCDVTFAMLADPE--SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 88 (257)
Q Consensus 17 ~s~~ea-~~~advvi~~l~~~~--~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdap 88 (257)
.+..+. ..++|+||.|+|... .+.++.+ ..+.+.++.+++|+++.++++ .+.++++++|++++|.=
T Consensus 169 ~~~~~~~~~~~DivInatp~gm~~~~~~~~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG~ 237 (270)
T TIGR00507 169 FSMDELPLHRVDLIINATSAGMSGNIDEPPV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDGL 237 (270)
T ss_pred echhhhcccCccEEEECCCCCCCCCCCCCCC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCCH
Confidence 344443 357999999999742 2221111 123467889999999999988 68889999999887753
No 132
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.20 E-value=0.13 Score=45.96 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=60.7
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc--EEEec
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FLEAP 88 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~--~vdap 88 (257)
.+++..+ +.|++++||+|++.+|-..+.+..+- ...++.+.+|.++||++-.+.-..+.+.+.+++.-+. -+|..
T Consensus 187 ~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 187 LGARYVD-LDELLAESDIISLHCPLTPETRHLIN--AEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred cCceecc-HHHHHHhCCEEEEeCCCChHHhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 3477777 99999999999999999999887763 3466789999999999999988888999989875332 34543
No 133
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.19 E-value=0.16 Score=45.18 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=55.4
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc--EEEe
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FLEA 87 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~--~vda 87 (257)
.++.|+++.||+|++++|-.++.+..+- ...++.+++|.++||.+-...=....+.+.+++.-+. -+|.
T Consensus 189 ~~l~ell~~sDiv~l~lPlt~~T~~li~--~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDV 259 (317)
T PRK06487 189 LPLDELLPQVDALTLHCPLTEHTRHLIG--ARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDV 259 (317)
T ss_pred cCHHHHHHhCCEEEECCCCChHHhcCcC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeec
Confidence 4789999999999999999888877763 3466789999999999988777777888888765443 3554
No 134
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.95 E-value=0.078 Score=47.29 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=62.2
Q ss_pred hhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC--cEE
Q 025140 8 FYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA--SFL 85 (257)
Q Consensus 8 ~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~--~~v 85 (257)
-...|....+++.++++.||+|++.+|-.+..+..+- ...+..+++|.++||++-...-.-..+.+.+++.-+ -.+
T Consensus 180 ~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~--~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~l 257 (324)
T COG0111 180 AGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN--AEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAAL 257 (324)
T ss_pred hccccceecccHHHHHhhCCEEEEcCCCCcchhcccC--HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEe
Confidence 3345778889999999999999999999999887763 245667899999999999888777888888876423 345
Q ss_pred Ee
Q 025140 86 EA 87 (257)
Q Consensus 86 da 87 (257)
|.
T Consensus 258 DV 259 (324)
T COG0111 258 DV 259 (324)
T ss_pred cC
Confidence 65
No 135
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.95 E-value=0.11 Score=42.34 Aligned_cols=109 Identities=10% Similarity=0.108 Sum_probs=61.5
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEc-CCCCHHHHHHHHHHHHHcCCcEEEecCC
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGASFLEAPVS 90 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~-ST~~p~~~~~la~~~~~~G~~~vdapV~ 90 (257)
..++.+++.+++ +||+||=|+|.+-.++.-++ ..+-+...+..++... |+.+++ ++++.+. +.-+++-.-.+
T Consensus 66 ~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i~---~la~~~~-~p~R~ig~Hf~ 138 (180)
T PF02737_consen 66 RISFTTDLEEAV-DADLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSIS---ELAAALS-RPERFIGMHFF 138 (180)
T ss_dssp TEEEESSGGGGC-TESEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-HH---HHHTTSS-TGGGEEEEEE-
T ss_pred hcccccCHHHHh-hhheehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCHH---HHHhccC-cCceEEEEecc
Confidence 445789999988 99999999999988876555 3455555566665444 344443 3444443 22233333333
Q ss_pred CChHHhhcCceEEEec--CChhHHHHHHHHHHHhcCCceec
Q 025140 91 GSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYL 129 (257)
Q Consensus 91 g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~~~~~~~~~ 129 (257)
.+|... .-.=++.| .++++++++..+++.+++.++.+
T Consensus 139 ~P~~~~--~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 139 NPPHLM--PLVEVVPGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp SSTTT----EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred cccccC--ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 222211 11123333 46799999999999999887765
No 136
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.88 E-value=0.12 Score=47.06 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=55.7
Q ss_pred cccCCHHHHHhcCCEEEEecCChH----HHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC--cEEEe
Q 025140 14 RYQPSPDEVAASCDVTFAMLADPE----SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA--SFLEA 87 (257)
Q Consensus 14 ~~~~s~~ea~~~advvi~~l~~~~----~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~--~~vda 87 (257)
....++.|++++||+|++++|... ..+..+ ++ ..+..+++|.++||+|...+-....+.+.+++.-. -.+|.
T Consensus 156 ~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li-~~-~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV 233 (381)
T PRK00257 156 GDFVSLERILEECDVISLHTPLTKEGEHPTRHLL-DE-AFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDV 233 (381)
T ss_pred ccccCHHHHHhhCCEEEEeCcCCCCccccccccC-CH-HHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeC
Confidence 345689999999999999999755 344443 43 46678999999999999999999999998876533 23565
No 137
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.84 E-value=0.18 Score=44.76 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=56.0
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc--EEEe
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FLEA 87 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~--~vda 87 (257)
..++.|++++||+|++++|-.+..+..+- ...++.+++|.++||++-...=....+.+.+++.-+. .+|.
T Consensus 188 ~~~l~ell~~sDiv~l~~Plt~~T~~li~--~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV 259 (314)
T PRK06932 188 YTPFEEVLKQADIVTLHCPLTETTQNLIN--AETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDV 259 (314)
T ss_pred cCCHHHHHHhCCEEEEcCCCChHHhcccC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEec
Confidence 45899999999999999998888877763 3466789999999999988877777888888865443 3554
No 138
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.79 E-value=0.039 Score=44.71 Aligned_cols=72 Identities=15% Similarity=0.041 Sum_probs=52.6
Q ss_pred hhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 8 FYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 8 ~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
+...|. ...++.|+++.||+|++++|-.++.+..+ + ...++.+++|.++||.+-...-.-..+.+.+++.-+
T Consensus 75 ~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li-~-~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i 146 (178)
T PF02826_consen 75 ADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLI-N-AEFLAKMKPGAVLVNVARGELVDEDALLDALESGKI 146 (178)
T ss_dssp HHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSB-S-HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSE
T ss_pred cccccc-eeeehhhhcchhhhhhhhhccccccceee-e-eeeeeccccceEEEeccchhhhhhhHHHHHHhhccC
Confidence 345565 45699999999999999999777666554 2 245678899999999998777666788888876433
No 139
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.29 E-value=0.24 Score=42.87 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=55.4
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC---CCHHHHHHHHHHHHHcCCc-EEE
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST---VDGDTSKLINGHIKATGAS-FLE 86 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST---~~p~~~~~la~~~~~~G~~-~vd 86 (257)
.|....++..|++.++|+|++|.+. +...++. ..+ +..|+-++.+|+ .+++..+++.+.++++|.+ |++
T Consensus 47 ~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~---~~a---l~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~ 119 (265)
T PRK13304 47 TGAKACLSIDELVEDVDLVVECASV-NAVEEVV---PKS---LENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLP 119 (265)
T ss_pred cCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHH---HHH---HHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEe
Confidence 3667789999998999999999875 5555554 223 345666667776 4788889999999998875 455
Q ss_pred ecCCCChHHhh
Q 025140 87 APVSGSKKPAE 97 (257)
Q Consensus 87 apV~g~~~~a~ 97 (257)
.-..++-....
T Consensus 120 sga~~g~d~i~ 130 (265)
T PRK13304 120 SGAIVGLDGIK 130 (265)
T ss_pred CchHHhHHHHH
Confidence 43344434433
No 140
>PLN02306 hydroxypyruvate reductase
Probab=93.05 E-value=0.28 Score=44.84 Aligned_cols=65 Identities=17% Similarity=0.032 Sum_probs=53.5
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
..++.|++++||+|++++|-.+..+..+. ...++.+++|.++||.+-...=....+.+.+++.-+
T Consensus 227 ~~~L~ell~~sDiV~lh~Plt~~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i 291 (386)
T PLN02306 227 ASSMEEVLREADVISLHPVLDKTTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKANPM 291 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCCChhhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCe
Confidence 46899999999999999998888877763 356678999999999998777777788888876534
No 141
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=92.81 E-value=0.23 Score=44.37 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=58.3
Q ss_pred hhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHH
Q 025140 7 AFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA 79 (257)
Q Consensus 7 ~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~ 79 (257)
...+.++. ..+..|.++++|+|++|+|..+..+.++- ..+++.+.+|.++||.+-...-.-+.+.+.+++
T Consensus 200 ~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liN--k~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 200 EAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLIN--KKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred hHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhh--HHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 34444555 66888999999999999999999998884 357789999999999999888887888888865
No 142
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=92.79 E-value=0.33 Score=37.65 Aligned_cols=77 Identities=10% Similarity=0.181 Sum_probs=55.1
Q ss_pred chhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 5 NNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
.+.+.+.||++.++..|+.++||+|+-.=+ +. ..-+..+.+|+++|-+.... ...++.+.+.++|+..
T Consensus 44 D~~Y~~aGA~I~~~~~ev~~~adiIl~v~~-p~---------~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~ 111 (136)
T PF05222_consen 44 DEEYEEAGAEIVSRAEEVYSDADIILKVKP-PS---------EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITA 111 (136)
T ss_dssp HHHHHHTTEEEESSHHHHHTTSSEEEESS-------------GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEE
T ss_pred HHHHhhCCcEEecCchhhcccCCEEEEECC-CC---------HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEE
Confidence 356888999999999999999999965443 22 12234578999998776554 4778888888999999
Q ss_pred EEecCCCCh
Q 025140 85 LEAPVSGSK 93 (257)
Q Consensus 85 vdapV~g~~ 93 (257)
++--..-.+
T Consensus 112 ~a~E~ipr~ 120 (136)
T PF05222_consen 112 FALELIPRI 120 (136)
T ss_dssp EEGGGSBSS
T ss_pred EEhhhCcCC
Confidence 887665554
No 143
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=92.59 E-value=1.2 Score=42.13 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCchhhhccccccccC-CC-----CCCC
Q 025140 134 NGAAMKLVVNMIMGSMMATFSEGLLHSEK------VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIES-LY-----PTAF 200 (257)
Q Consensus 134 ~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~~-----~~~f 200 (257)
....++-+.+.+..+.+.+++|.+.+.++ .++|...+..+.+.+. ..|++++...+.+.+. +. .+.|
T Consensus 326 ~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~ 405 (493)
T PLN02350 326 KKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEF 405 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHH
Confidence 35667788899999999999999999874 4789999999999887 5888887655444221 11 1122
Q ss_pred --chhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 025140 201 --PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA 236 (257)
Q Consensus 201 --~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a 236 (257)
.+.....+.+.++..+-+.|+|+|.+..++..|+.-
T Consensus 406 ~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~ 443 (493)
T PLN02350 406 AKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTY 443 (493)
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 123345677888999999999999999999966544
No 144
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.18 E-value=0.27 Score=43.11 Aligned_cols=69 Identities=17% Similarity=0.103 Sum_probs=49.0
Q ss_pred hcCcccc--CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 10 YSRCRYQ--PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 10 ~~Ga~~~--~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
+.|.... +++.+.++++|+||.++|..- + . ...++.+.++.++||+++.+-.+- + +.++++|++.+=+
T Consensus 192 ~~g~~~~~~~~l~~~l~~aDiVint~P~~i-----i-~-~~~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~ 261 (287)
T TIGR02853 192 EMGLIPFPLNKLEEKVAEIDIVINTIPALV-----L-T-ADVLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLA 261 (287)
T ss_pred HCCCeeecHHHHHHHhccCCEEEECCChHH-----h-C-HHHHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEe
Confidence 3455433 356788899999999998752 1 1 234456788999999999776653 3 5678889887766
Q ss_pred c
Q 025140 88 P 88 (257)
Q Consensus 88 p 88 (257)
|
T Consensus 262 ~ 262 (287)
T TIGR02853 262 P 262 (287)
T ss_pred C
Confidence 6
No 145
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.16 E-value=0.16 Score=44.66 Aligned_cols=77 Identities=10% Similarity=-0.004 Sum_probs=51.8
Q ss_pred hhhhcCccccCCHHHHHhcCCEEEEecCChHH---HHHHhcC-----CCcccccCCCCCEEEEcCCCCHHHHHHHHHHHH
Q 025140 7 AFYYSRCRYQPSPDEVAASCDVTFAMLADPES---AMDVACG-----KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 78 (257)
Q Consensus 7 ~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~---v~~v~~~-----~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~ 78 (257)
.....|++.+++..|+++++|+|+..+|-... ++..+.. ++..++.+++|.+++ .+..+|... +.++
T Consensus 37 ~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~----~~~~ 111 (296)
T PRK08306 37 DHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK----ELAK 111 (296)
T ss_pred ccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH----HHHH
Confidence 34466888999999999999999999874221 1222110 123456788897555 477777732 4567
Q ss_pred HcCCcEEEec
Q 025140 79 ATGASFLEAP 88 (257)
Q Consensus 79 ~~G~~~vdap 88 (257)
++|+.++|.+
T Consensus 112 ~~gi~~~~~~ 121 (296)
T PRK08306 112 ETNRKLVELF 121 (296)
T ss_pred HCCCeEEEEe
Confidence 8999988766
No 146
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=92.01 E-value=1.5 Score=38.41 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=74.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCchhhhccccccccC-C-----CC
Q 025140 131 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK------VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIES-L-----YP 197 (257)
Q Consensus 131 ~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~-----~~ 197 (257)
.......++-+.+.+..+.+...++.+.+.++ .++|...+..+.+.|. ..|.+++.....+... + ..
T Consensus 135 ~~~~~~~i~~l~~Aly~~~i~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~ 214 (291)
T PF00393_consen 135 KEDKEEFIEDLRKALYAAKIISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLD 214 (291)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccC
Confidence 35678888999999999999999999988765 5688899999998876 5777777654433221 1 11
Q ss_pred CCCc--hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHC
Q 025140 198 TAFP--LKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 239 (257)
Q Consensus 198 ~~f~--~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 239 (257)
+.|. +.....+++.++..+-+.|+|+|.+.++++.|+.-...
T Consensus 215 ~~f~~~l~~~~~~lR~vV~~ai~~gipvPalsaaL~Y~ds~~~~ 258 (291)
T PF00393_consen 215 PYFAEELKDNQPSLRRVVSLAIEAGIPVPALSAALSYFDSYRSE 258 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcccC
Confidence 2232 34456678899999999999999999999888755443
No 147
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=91.59 E-value=0.15 Score=40.70 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=34.6
Q ss_pred hhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcC
Q 025140 7 AFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS 63 (257)
Q Consensus 7 ~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~S 63 (257)
...+.|-+ ..+++|+++.+|+|++.+||..+ .+|+. +.+.+.+.+|++++=..
T Consensus 43 ~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~~q-~~vy~--~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 43 KAKADGFE-VMSVAEAVKKADVVMLLLPDEVQ-PEVYE--EEIAPNLKPGATLVFAH 95 (165)
T ss_dssp HHHHTT-E-CCEHHHHHHC-SEEEE-S-HHHH-HHHHH--HHHHHHS-TT-EEEESS
T ss_pred HHHHCCCe-eccHHHHHhhCCEEEEeCChHHH-HHHHH--HHHHhhCCCCCEEEeCC
Confidence 34556655 56999999999999999997544 45663 46778899999886554
No 148
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=90.66 E-value=3.7 Score=34.58 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=63.1
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCC
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 90 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~ 90 (257)
.|..+..+-+|++.++|.||+-+|...---+++ +.++..+++|.++-...|++...-.++ .++.|-. |--|.
T Consensus 125 ~g~~vttddreavedad~iitwlpkg~~qpdii---kkfiddipegaivthactipttkf~ki---fed~gre--dlnvt 196 (343)
T COG4074 125 MGIVVTTDDREAVEDADMIITWLPKGGVQPDII---KKFIDDIPEGAIVTHACTIPTTKFKKI---FEDMGRE--DLNVT 196 (343)
T ss_pred ceeEEecCcHhhhcCCCeEEEeccCCCCCccHH---HHHHhcCCCCceEeeecccchHHHHHH---HHHhCcc--cccee
Confidence 577788999999999999999999754322233 334556789999999999987655554 5555432 22333
Q ss_pred CChHH---hhcCceEEEec-CChhHHHHHHHH
Q 025140 91 GSKKP---AEDGQLIFLAA-GDKSLYNTVAPL 118 (257)
Q Consensus 91 g~~~~---a~~g~l~i~~g-g~~~~~~~~~~l 118 (257)
.+-++ -..|+..+--| .++++.+.+-++
T Consensus 197 syhpg~vpemkgqvyiaegyaseeavn~lyel 228 (343)
T COG4074 197 SYHPGTVPEMKGQVYIAEGYASEEAVNALYEL 228 (343)
T ss_pred ccCCCCCccccCcEEEecccccHHHHHHHHHH
Confidence 33222 23677555555 356665544443
No 149
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=90.64 E-value=0.2 Score=44.72 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=44.5
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEE
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 86 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vd 86 (257)
...++++.|++++||+|++|.|+.+.+ +. .+.+++|..|...++-.|.. +++...+-.+.--|+|
T Consensus 180 v~~~~~~~eav~~aDiVitaT~s~~P~---~~-----~~~l~~g~~v~~vGs~~p~~-~Eld~~~l~~a~v~vD 244 (325)
T TIGR02371 180 VRAATDPREAVEGCDILVTTTPSRKPV---VK-----ADWVSEGTHINAIGADAPGK-QELDPEILKNAKIFVD 244 (325)
T ss_pred EEEeCCHHHHhccCCEEEEecCCCCcE---ec-----HHHcCCCCEEEecCCCCccc-ccCCHHHHhcCcEEEC
Confidence 467899999999999999999986532 21 12357899988888888743 5555444333323455
No 150
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.33 E-value=1.3 Score=32.75 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=53.0
Q ss_pred hcCccccCCHHHHHh--cCCEEEEecCChHHHHHHhcCCCcccccCCCC-CEEEEc-CCCCHHHHHHHHHHHHHcCCcE
Q 025140 10 YSRCRYQPSPDEVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPG-KGYVDV-STVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~~--~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g-~~ivd~-ST~~p~~~~~la~~~~~~G~~~ 84 (257)
..|....+|..|+++ +.|+|+++.|+.....-+. .+++ .| .++++. -+.++++.+++.+.++++|..+
T Consensus 45 ~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~----~~l~---~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 45 KYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK----KALE---AGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp HTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH----HHHH---TTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred HhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH----HHHH---cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 357888999999998 6899999999987766554 2222 23 577776 4679999999999999998764
No 151
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.19 E-value=0.47 Score=41.72 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=46.5
Q ss_pred hhcCcccc--CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEE
Q 025140 9 YYSRCRYQ--PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 86 (257)
Q Consensus 9 ~~~Ga~~~--~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vd 86 (257)
...|++.. +++.+.++++|+||.++|..--.+ ..++.+.++.+|||+++.+-.+. + +.++++|++.+=
T Consensus 192 ~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~-------~~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~ 261 (296)
T PRK08306 192 TEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTK-------EVLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALL 261 (296)
T ss_pred HHcCCeeecHHHHHHHhCCCCEEEECCChhhhhH-------HHHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEE
Confidence 34566644 467788999999999998642222 33456788999999998775542 2 355667776653
No 152
>PF09130 DUF1932: Domain of unknown function (DUF1932); InterPro: IPR015814 This domain has been found in a number of eukaryotic and prokaryotic proteins, some of which are predicted to be 6-phosphogluconate dehydrogenase, NAD-binding proteins.; PDB: 3QSG_A 1I36_A 4EZB_A.
Probab=90.18 E-value=0.32 Score=33.34 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=42.8
Q ss_pred HHHcCCCHHHHHHHHhhcCCCch--hhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 025140 160 SEKVGLDPNVLVEVVSQGAISAP--MYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 237 (257)
Q Consensus 160 a~~~Gld~~~~~~~l~~~~~~s~--~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 237 (257)
|+++|+... +++.|..+...-. ......+++.. .+ .-...+++.+.++.++.|++..+.+++.++|+...
T Consensus 1 A~~~Gv~~~-ll~sl~~s~p~~~~~~~~~~v~~~~~----hA---~Rr~~EM~Eia~tl~~~g~~~~m~~a~a~~~~~~a 72 (73)
T PF09130_consen 1 ARRYGVEDE-LLASLAESFPGLDWALAERLVPRMAP----HA---YRRAAEMEEIADTLAELGLPPEMFRAAAEVLRRVA 72 (73)
T ss_dssp HHHTT-HHH-HHHHHHHHSCCSCHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHCH
T ss_pred CcccccHHH-HHHHHHHHCCcchHHHHHHHcccchh----hH---HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 578999865 5566665432211 22222232221 11 23578999999999999999999999999998753
No 153
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=90.00 E-value=1.1 Score=37.92 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=50.1
Q ss_pred cCccccCCHHHHH-hcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC---CHHHHHHHHHHHHHcCCcEE
Q 025140 11 SRCRYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 11 ~Ga~~~~s~~ea~-~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~---~p~~~~~la~~~~~~G~~~v 85 (257)
.|....++..|++ .+.|+|++|.|+....+-.. +.+..|+-++-+|.. +.+..+++.+.+++.|.++.
T Consensus 22 ~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 22 CGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADRELRERLREVARSSGRKVY 93 (229)
T ss_pred hCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHHHHHHHHHHHhcCCEEE
Confidence 4678889999986 57999999999876654443 234456544446664 67889999999999888753
No 154
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=88.93 E-value=0.5 Score=42.21 Aligned_cols=120 Identities=21% Similarity=0.222 Sum_probs=72.1
Q ss_pred CHHHH-HhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHH-HHHHHH-c-CCcEEEecCCCCh
Q 025140 18 SPDEV-AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI-NGHIKA-T-GASFLEAPVSGSK 93 (257)
Q Consensus 18 s~~ea-~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~l-a~~~~~-~-G~~~vdapV~g~~ 93 (257)
++.+. .++||+||+|+|+..+.+-|- .+ +.+|..|||+|+-.-=.-.++ .+|-.. | +-.+++-.|.|-|
T Consensus 62 ~~~~~~~~~~DvvFlalPhg~s~~~v~----~l---~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLp 134 (349)
T COG0002 62 DPEKIELDECDVVFLALPHGVSAELVP----EL---LEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLP 134 (349)
T ss_pred ChhhhhcccCCEEEEecCchhHHHHHH----HH---HhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCc
Confidence 34443 445999999999988766553 22 335677999997433221222 222222 1 3356677777776
Q ss_pred HHh----hcCceEEEecCCh-hHHHHHHHHHHH----hcCC-cee--cCCCchHHHHHHHHHH
Q 025140 94 KPA----EDGQLIFLAAGDK-SLYNTVAPLLDI----MGKS-RFY--LGDVGNGAAMKLVVNM 144 (257)
Q Consensus 94 ~~a----~~g~l~i~~gg~~-~~~~~~~~ll~~----~~~~-~~~--~G~~G~a~~~Kl~~n~ 144 (257)
+.- +..++.-.-||-. .+.-.+.|+++. .... ++. .|-.|+|...+.-+.+
T Consensus 135 El~~e~i~~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~ 197 (349)
T COG0002 135 ELHREKIRGAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHF 197 (349)
T ss_pred ccCHHHHhcCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccc
Confidence 643 4566666778744 666678999976 3443 222 2557888777655433
No 155
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.90 E-value=0.82 Score=41.69 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=52.0
Q ss_pred cCCHHHHHhcCCEEEEecCChHH----HHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC--cEEEe
Q 025140 16 QPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA--SFLEA 87 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~----v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~--~~vda 87 (257)
..++.|++++||+|++++|-... .+..+ + ++.+..+++|.++||.|-...=....+.+.+++.-. -.+|.
T Consensus 158 ~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li-~-~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV 233 (378)
T PRK15438 158 FRSLDELVQEADILTFHTPLFKDGPYKTLHLA-D-EKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDV 233 (378)
T ss_pred cCCHHHHHhhCCEEEEeCCCCCCccccccccc-C-HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEec
Confidence 56899999999999988885432 33333 2 245677899999999999888888888888876533 23565
No 156
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.10 E-value=1.3 Score=36.65 Aligned_cols=72 Identities=10% Similarity=-0.015 Sum_probs=43.8
Q ss_pred hhhc-CccccCCHHHHH-hcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 8 FYYS-RCRYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 8 ~~~~-Ga~~~~s~~ea~-~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
+.+. |++..++ .++. .+||+++.|-....-..+. ++.+ +.++|++..+.+... .+-.+.++++|+.|+
T Consensus 67 ~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~-------~~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~ 136 (200)
T cd01075 67 AAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDT-------IPQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYA 136 (200)
T ss_pred HHHHcCCEEEcc-hhhccccCCEEEecccccccCHHH-------HHHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEe
Confidence 4444 6666655 4444 4799998664432111222 2223 467888888765543 566778899999998
Q ss_pred E-ecC
Q 025140 86 E-APV 89 (257)
Q Consensus 86 d-apV 89 (257)
+ .-.
T Consensus 137 Pd~~~ 141 (200)
T cd01075 137 PDYVV 141 (200)
T ss_pred Cceee
Confidence 6 444
No 157
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=87.82 E-value=0.49 Score=42.30 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=47.6
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHc-CCcEEEec
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT-GASFLEAP 88 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~-G~~~vdap 88 (257)
+..++|+++++++||+|++|.|+.+. ++. .+-+.+|..|.-+++-.|.- +++...+-.+ +.-|+|-+
T Consensus 183 v~a~~s~~~av~~aDiIvt~T~s~~P---il~-----~~~l~~G~hI~aiGad~p~k-~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 183 VGAADSAEEAVEGADIVVTATPSTEP---VLK-----AEWLKPGTHINAIGADAPGK-RELDPEVLARADRVVVDSL 250 (330)
T ss_pred ceeccCHHHHhhcCCEEEEecCCCCC---eec-----HhhcCCCcEEEecCCCCccc-ccCCHHHHHhcCeEEEcCH
Confidence 46899999999999999999999773 331 12356788887777775554 5665544444 46777765
No 158
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=87.59 E-value=0.91 Score=35.38 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=37.0
Q ss_pred hhhcCccc--cC----CHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY--QP----SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~--~~----s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...|+++ ++ ++.|.+++||+||++++.+.-++. +.+++|.+++|.+...
T Consensus 48 L~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~i~~---------~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 48 LQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEKVPT---------EWIKPGATVINCSPTK 103 (140)
T ss_pred HHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCccCH---------HHcCCCCEEEEcCCCc
Confidence 55567754 45 789999999999999998743221 2367999999888655
No 159
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=87.29 E-value=0.84 Score=42.48 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=38.7
Q ss_pred hhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEE
Q 025140 6 NAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 60 (257)
Q Consensus 6 ~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~iv 60 (257)
+...+.|-++ .++.|+++.||+|++.+||.. -..++ +.+.+.+++|.++.
T Consensus 79 ~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~-q~~v~---~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 79 RKATENGFKV-GTYEELIPQADLVINLTPDKQ-HSDVV---RAVQPLMKQGAALG 128 (487)
T ss_pred HHHHhcCCcc-CCHHHHHHhCCEEEEcCChHH-HHHHH---HHHHhhCCCCCEEE
Confidence 3455577765 789999999999999999984 44455 57888888888764
No 160
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=86.74 E-value=3.1 Score=36.55 Aligned_cols=70 Identities=7% Similarity=-0.010 Sum_probs=48.0
Q ss_pred cCccccCCHHHHHhc--CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 11 SRCRYQPSPDEVAAS--CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~--advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
.|.+...|++|+-.. .|+.++++|.+.. .+++ ++..+. .-+..+|-.+-...+..+++.+.++++|++++
T Consensus 49 ~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v-~~~l---~e~~~~-gvk~avI~s~Gf~~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 49 LGLPVFNTVAEAVEATGANASVIYVPPPFA-ADAI---LEAIDA-GIDLIVCITEGIPVLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred eCeeccCCHHHHhhccCCCEEEEEcCHHHH-HHHH---HHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 477888999999987 8999999997544 3444 233331 12334444454555556789999999998875
No 161
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.21 E-value=27 Score=32.10 Aligned_cols=177 Identities=15% Similarity=0.238 Sum_probs=113.4
Q ss_pred cccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHH-HHHHHHHHhcCCc-e
Q 025140 50 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYN-TVAPLLDIMGKSR-F 127 (257)
Q Consensus 50 ~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~-~~~~ll~~~~~~~-~ 127 (257)
+....+.+++|-.|...-....++...++..|+.. -++..|-.|+....++++--+--.=+ ....+|..-+.+. .
T Consensus 162 lt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~---~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYv 238 (429)
T PF10100_consen 162 LTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQL---EVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYV 238 (429)
T ss_pred hhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeE---EEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceE
Confidence 33345789999999888888889999999999754 34566778888888888865432111 3566666655432 1
Q ss_pred e-c---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC--CC---------------chhhhc
Q 025140 128 Y-L---GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA--IS---------------APMYSL 186 (257)
Q Consensus 128 ~-~---G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~--~~---------------s~~~~~ 186 (257)
| + ||+- -.++.-+...+-|++.+-.+.|+++=.+++.++... .. ++.-+.
T Consensus 239 YKL~PEGPIT---------~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QE 309 (429)
T PF10100_consen 239 YKLFPEGPIT---------PTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQE 309 (429)
T ss_pred EecCCCCCCC---------HHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhh
Confidence 1 2 5543 233445556889999999999999999999998731 00 011111
Q ss_pred c------cccccc--------CCCCCCCc----------------hhhH----HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 025140 187 K------GPSMIE--------SLYPTAFP----------------LKHQ----QKDLRLALGLAESVSQSTPIAAAANEL 232 (257)
Q Consensus 187 ~------~~~~~~--------~~~~~~f~----------------~~~~----~KD~~~~~~~a~~~g~~~p~~~~~~~~ 232 (257)
+ ..-+++ |.|. .|+ +..+ ..-+..+...++.+|+++|+++...+.
T Consensus 310 YLLYVRYtsiLIDPFS~PD~~GrYF-DFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~ 388 (429)
T PF10100_consen 310 YLLYVRYTSILIDPFSEPDEQGRYF-DFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLAR 388 (429)
T ss_pred HHHHHHhhhheeCCCCCCCCCCCcc-cccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 1 000111 1110 011 1112 123778899999999999999999999
Q ss_pred HHHHHHC
Q 025140 233 YKVAKSH 239 (257)
Q Consensus 233 ~~~a~~~ 239 (257)
|+....+
T Consensus 389 Ye~~l~~ 395 (429)
T PF10100_consen 389 YESKLSQ 395 (429)
T ss_pred HHHHHHH
Confidence 9987653
No 162
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=86.15 E-value=0.25 Score=36.44 Aligned_cols=51 Identities=12% Similarity=-0.029 Sum_probs=35.1
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 64 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST 64 (257)
.+.+.++++.++++++|+||+++..++=-+ + .-+++...+.++++|||+-.
T Consensus 52 ~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~-l--~~~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 52 EGVEVCDDLEEALKGADAVVLATDHDEFRE-L--DWEEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp HCEEEESSHHHHHTTESEEEESS--GGGGC-C--GHHHHHHHSCSSEEEEESSS
T ss_pred cceEEecCHHHHhcCCCEEEEEecCHHHhc-c--CHHHHHHhcCCCCEEEECcc
Confidence 477888999999999999999998754321 1 01234444568899999854
No 163
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=85.72 E-value=21 Score=30.38 Aligned_cols=141 Identities=18% Similarity=0.140 Sum_probs=87.9
Q ss_pred CCHHHHHh---cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEE----ecC
Q 025140 17 PSPDEVAA---SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE----APV 89 (257)
Q Consensus 17 ~s~~ea~~---~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vd----apV 89 (257)
..|.++.+ -.+++|+-+|+. ....+. ......+|++++-||.-. .+.|-..+.+.|+.-.. .-.
T Consensus 56 a~p~d~~~~ael~~~vfv~vpd~-~~s~va-----a~~~~rpg~iv~HcSga~---~~~il~~~gr~g~~~asiHP~f~F 126 (289)
T COG5495 56 APPLDVAKSAELLLLVFVDVPDA-LYSGVA-----ATSLNRPGTIVAHCSGAN---GSGILAPLGRQGCIPASIHPAFSF 126 (289)
T ss_pred CCccchhhChhhhceEEecchHH-HHHHHH-----HhcccCCCeEEEEccCCC---chhhhhhhhhcCCcceeecccccc
Confidence 34444443 356888888876 333443 122346888888888643 23556666666654321 124
Q ss_pred CCChHHhh--cCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 025140 90 SGSKKPAE--DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDP 167 (257)
Q Consensus 90 ~g~~~~a~--~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~ 167 (257)
+|.+.... .++.....-+|+--+..++.+...||.+.|.+ ..+.=-..-.+.|.........+.|+..+-+..|+|.
T Consensus 127 sgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~emgg~~f~V-~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq 205 (289)
T COG5495 127 SGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEMGGEPFCV-REEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQ 205 (289)
T ss_pred cCCHHHHHhCcccEEEeecccccccHHHHHHHHHhCCCceee-chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 56676665 34433333577777788999999999987766 3343344445555555555678899999999999875
No 164
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=85.24 E-value=4.2 Score=35.66 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=46.5
Q ss_pred cCccccCCHHHHHhc--CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 11 SRCRYQPSPDEVAAS--CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~--advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
.|.+...|+.|+.+. .|++++++|.+. +.+++ ++..+. .-...+|-.+-.+....+++.+.++++|++++
T Consensus 47 ~G~~~y~sv~dlp~~~~~Dlavi~vpa~~-v~~~l---~e~~~~-Gvk~avIis~Gf~e~~~~~l~~~a~~~giril 118 (286)
T TIGR01019 47 LGLPVFDSVKEAVEETGANASVIFVPAPF-AADAI---FEAIDA-GIELIVCITEGIPVHDMLKVKRYMEESGTRLI 118 (286)
T ss_pred cCeeccCCHHHHhhccCCCEEEEecCHHH-HHHHH---HHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 477888999999986 799999999654 44444 233321 12234444444444445788899999998875
No 165
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=85.23 E-value=0.87 Score=34.16 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=39.7
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
.|.+...|+.|.-...|++++++|. +.+.+++ +.+.. +..+.+|+..+ ...+++.+.++++|.+++
T Consensus 41 ~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v---~~~~~-~g~~~v~~~~g----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 41 LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIV---DEAAA-LGVKAVWLQPG----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHH---HHHHH-HT-SEEEE-TT----S--HHHHHHHHHTT-EEE
T ss_pred CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHH---HHHHH-cCCCEEEEEcc----hHHHHHHHHHHHcCCEEE
Confidence 3677889999944889999999995 4444555 33332 23567777777 555667778888998876
No 166
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=85.04 E-value=3.6 Score=36.57 Aligned_cols=70 Identities=7% Similarity=0.028 Sum_probs=46.5
Q ss_pred cCccccCCHHHHHhc--CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHH-HcCCcEE
Q 025140 11 SRCRYQPSPDEVAAS--CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK-ATGASFL 85 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~--advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~-~~G~~~v 85 (257)
.|....+|+.|+.+. .|+.+++||.+...+.+. +..+. .-..++|-.+-.+.....++.+.++ ++|.+++
T Consensus 72 ~Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~dai~----Ea~~a-GI~~~ViiteGfpe~d~~~l~~~~~~~~g~rli 144 (317)
T PTZ00187 72 HGLPVFATVKEAKKATGADASVIYVPPPHAASAII----EAIEA-EIPLVVCITEGIPQHDMVKVKHALLSQNKTRLI 144 (317)
T ss_pred CCccccCCHHHHhcccCCCEEEEecCHHHHHHHHH----HHHHc-CCCEEEEECCCCchhhHHHHHHHHhhcCCCEEE
Confidence 388889999999987 999999999876655554 22221 1233555556566655666665554 4676654
No 167
>PRK11579 putative oxidoreductase; Provisional
Probab=84.77 E-value=3.6 Score=36.82 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=50.5
Q ss_pred CccccCCHHHHHh--cCCEEEEecCChHHHHHHhcCCCcccccCCCCC-EEEEcC-CCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 12 RCRYQPSPDEVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGK-GYVDVS-TVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 12 Ga~~~~s~~ea~~--~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~-~ivd~S-T~~p~~~~~la~~~~~~G~~~vda 87 (257)
+....+|..|+++ +.|+|++|+|+....+-+. ..+..|+ ++++.- +.+.+++++|.+.++++|..+.-+
T Consensus 49 ~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~-------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~ 121 (346)
T PRK11579 49 TVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK-------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVF 121 (346)
T ss_pred CCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 4567799999996 4799999999987766554 2233444 666753 678899999999998888776433
No 168
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.59 E-value=30 Score=31.08 Aligned_cols=202 Identities=13% Similarity=0.172 Sum_probs=123.9
Q ss_pred cCCEEEEecCChHHHHHHhcC--CCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceE
Q 025140 25 SCDVTFAMLADPESAMDVACG--KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLI 102 (257)
Q Consensus 25 ~advvi~~l~~~~~v~~v~~~--~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~ 102 (257)
++|+-++++++.=+--.++.. ++-++...-+.++++-.+-..-...+.+.+.++.+|+. .-+..+|-.|+....+
T Consensus 137 ~~daeViS~SsY~~dTk~id~~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~---v~~~esp~~AEtrnit 213 (431)
T COG4408 137 GRDAEVISLSSYYADTKYIDAEQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGID---VEPCESPLAAETRNIT 213 (431)
T ss_pred CCCceEEEeehhcccceeecccCcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCc---eEEcCChhhhhhcccc
Confidence 467777777664322222211 11122222366788877777777777788888888864 4466778889888888
Q ss_pred EEecCChhHHH-HHHHHHHHhcCCce--ec---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025140 103 FLAAGDKSLYN-TVAPLLDIMGKSRF--YL---GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ 176 (257)
Q Consensus 103 i~~gg~~~~~~-~~~~ll~~~~~~~~--~~---G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~ 176 (257)
.++--+--.-+ ....+|...+.+.+ .+ |++- ..++.-+...+.|.+.+..+.|+..-.++..++.
T Consensus 214 ~YVHpPlflndfsL~aif~~~~~p~yvYKlyPEGPIt---------~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~d 284 (431)
T COG4408 214 LYVHPPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPIT---------PALIRDMRGLWKEYMRLLNRLGVEEINLLRFLND 284 (431)
T ss_pred eeecCcchhhhhHHHHHhCCcCCCceeEecCCCCCCC---------HHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhcc
Confidence 88876653222 35667777766432 12 4442 3344555678999999999999999889999877
Q ss_pred cC--CCc---------------hhhhcc------cccccc--------CCC-C-------------------CCCchhhH
Q 025140 177 GA--ISA---------------PMYSLK------GPSMIE--------SLY-P-------------------TAFPLKHQ 205 (257)
Q Consensus 177 ~~--~~s---------------~~~~~~------~~~~~~--------~~~-~-------------------~~f~~~~~ 205 (257)
.- ... +..+.+ ..-+++ |.| + |..+++-
T Consensus 285 dNYPV~~e~l~r~dId~F~~~~~i~QeYlLfVRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~ED- 363 (431)
T COG4408 285 DNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFVRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLED- 363 (431)
T ss_pred CCCCcChhhcCccchhhcccCChHHHHHHHHHHHHHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHH-
Confidence 41 000 111111 000111 110 0 1111111
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHC
Q 025140 206 QKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 239 (257)
Q Consensus 206 ~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 239 (257)
..-+..++-.+...++++|.++.....|+.++++
T Consensus 364 y~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k~ 397 (431)
T COG4408 364 YYKLATIQLLAGALDVVMPTADQLLTRYEQALKA 397 (431)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 1226678889999999999999999999999764
No 169
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=83.72 E-value=14 Score=33.86 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=78.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHhhcC-CCchhhhcccccccc------CCCCC
Q 025140 132 VGNGAAMKLVVNMIMGSMMATFSEGLLHSEK----V--GLDPNVLVEVVSQGA-ISAPMYSLKGPSMIE------SLYPT 198 (257)
Q Consensus 132 ~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~----~--Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~------~~~~~ 198 (257)
-...+.++-+.+.+.+..+.+.+..+++.++ + +++...+..+.+.+- ..|.+++.....+.. --+.|
T Consensus 313 ~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~p 392 (473)
T COG0362 313 GDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAP 392 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCH
Confidence 4577888889999999999888888877654 3 578888888888765 466666654332221 11223
Q ss_pred CC--chhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 025140 199 AF--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS 238 (257)
Q Consensus 199 ~f--~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 238 (257)
-| -+.....+++.++..+-+.|+|+|.+..++..|+.-..
T Consensus 393 yF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~ 434 (473)
T COG0362 393 YFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRT 434 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhh
Confidence 34 24556788999999999999999999999999886543
No 170
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=83.68 E-value=1.3 Score=39.85 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=30.2
Q ss_pred CHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 18 SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 18 s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
++.++.+++|+||+|+|+..+.+-+- .+ ...|+.|||+|+..
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~----~~---~~~G~~VIDlS~~f 102 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAP----EL---LAAGVKVIDLSADF 102 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHH----HH---HhCCCEEEeCChhh
Confidence 55666678999999999976644332 22 24689999999743
No 171
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=83.43 E-value=5.2 Score=34.58 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=46.2
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCC-CEEEEcCCCCHHHHHHHHHHHHHcCCcEEEec
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG-KGYVDVSTVDGDTSKLINGHIKATGASFLEAP 88 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g-~~ivd~ST~~p~~~~~la~~~~~~G~~~vdap 88 (257)
.|..+.+++.++...+|+||.|.+. +.+.+.+ ... +..| .+|+.++..+++..+++.+.+++.|+.++=+|
T Consensus 54 ~gv~~~~d~~~l~~~~DvVIdfT~p-~~~~~~~---~~a---l~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~ 125 (266)
T TIGR00036 54 VGVPVTDDLEAVETDPDVLIDFTTP-EGVLNHL---KFA---LEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAP 125 (266)
T ss_pred CCceeeCCHHHhcCCCCEEEECCCh-HHHHHHH---HHH---HHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEEC
Confidence 3566678888885568999888854 4444444 222 3344 45556666788888888888777776554444
No 172
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=83.40 E-value=9.4 Score=34.36 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=76.2
Q ss_pred cCccccCCHHHHH-hcCCEEEEecCChHHHHHHhcCCCcc-cccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe-
Q 025140 11 SRCRYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA- 87 (257)
Q Consensus 11 ~Ga~~~~s~~ea~-~~advvi~~l~~~~~v~~v~~~~~~~-~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda- 87 (257)
-|....+.+.+.+ +..|+|+.|+.- ...+.++ ... .+.++.|++++|-.++.--....+.+.+ .+.++.+-+
T Consensus 93 yg~~~ft~lhdlcerhpDvvLlctsi-lsiekil---atypfqrlrrgtlfvdvlSvKefek~lfekYL-PkdfDIlctH 167 (480)
T KOG2380|consen 93 YGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKIL---ATYPFQRLRRGTLFVDVLSVKEFEKELFEKYL-PKDFDILCTH 167 (480)
T ss_pred hcccccccHHHHHhcCCCEEEEEehh-hhHHHHH---HhcCchhhccceeEeeeeecchhHHHHHHHhC-ccccceEeec
Confidence 4777788888988 569999999874 4445554 111 2347789999999887766655555555 345666544
Q ss_pred cCCCChHHhhcCc-eEEEe----cCC----hhHHHHHHHHHHHhcCCceecC
Q 025140 88 PVSGSKKPAEDGQ-LIFLA----AGD----KSLYNTVAPLLDIMGKSRFYLG 130 (257)
Q Consensus 88 pV~g~~~~a~~g~-l~i~~----gg~----~~~~~~~~~ll~~~~~~~~~~G 130 (257)
|++|........+ |++++ .|+ .+-++.+.++|.+.+.+.+++.
T Consensus 168 pmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 168 PMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS 219 (480)
T ss_pred CCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 6666653333333 33332 344 5667888899999998888874
No 173
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=83.04 E-value=1.5 Score=38.89 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=29.1
Q ss_pred CHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC
Q 025140 18 SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 64 (257)
Q Consensus 18 s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST 64 (257)
++.++++++|++|+|+|+..+.+-+- .+ ...|..|||+|+
T Consensus 42 ~~~~~~~~~D~vFlalp~~~s~~~~~----~~---~~~g~~VIDlSa 81 (310)
T TIGR01851 42 ERAKLLNAADVAILCLPDDAAREAVS----LV---DNPNTCIIDAST 81 (310)
T ss_pred CHhHhhcCCCEEEECCCHHHHHHHHH----HH---HhCCCEEEECCh
Confidence 45667789999999999876554332 22 246889999995
No 174
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=83.03 E-value=4.7 Score=36.08 Aligned_cols=143 Identities=13% Similarity=0.037 Sum_probs=83.8
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC----CHH-HHHHHHHHHHHc-CCcEEE
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV----DGD-TSKLINGHIKAT-GASFLE 86 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~----~p~-~~~~la~~~~~~-G~~~vd 86 (257)
....+++.|++.++|++|..+|. +-+.+++ +++.....++...|.++-. .+. ..+-+.+.+.+. |+ .
T Consensus 93 vvAv~dl~ea~~dADilvf~vPh-Qf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI---~ 165 (372)
T KOG2711|consen 93 VVAVPDLVEAAKDADILVFVVPH-QFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGI---P 165 (372)
T ss_pred eEecchHHHHhccCCEEEEeCCh-hhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCC---C
Confidence 34579999999999999999995 5566677 6676677778777777632 222 245556666543 43 2
Q ss_pred ecCCCChHHhh----cCceEEEecCChh-HHH-HHHHHHHHhcCCce---------ecC--------CCchHHHHHHHHH
Q 025140 87 APVSGSKKPAE----DGQLIFLAAGDKS-LYN-TVAPLLDIMGKSRF---------YLG--------DVGNGAAMKLVVN 143 (257)
Q Consensus 87 apV~g~~~~a~----~g~l~i~~gg~~~-~~~-~~~~ll~~~~~~~~---------~~G--------~~G~a~~~Kl~~n 143 (257)
+.|.+|+.-|. ....-.-+|+.+. ... .+..+|+.-.-.+. .+| ..|-...+.+.+|
T Consensus 166 ~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~N 245 (372)
T KOG2711|consen 166 CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNN 245 (372)
T ss_pred ceeecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcc
Confidence 33666655442 2222233455432 111 13333332111111 111 2344455667778
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025140 144 MIMGSMMATFSEGLLHSEK 162 (257)
Q Consensus 144 ~~~~~~~~~~~Ea~~la~~ 162 (257)
.-.+++..++.|+..|++.
T Consensus 246 TkaAi~r~Gl~Em~~F~~~ 264 (372)
T KOG2711|consen 246 TKAAIIRLGLLEMIKFATH 264 (372)
T ss_pred hHHHHHHhhHHHHHHHHHH
Confidence 8888888888999888886
No 175
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=82.58 E-value=0.97 Score=33.96 Aligned_cols=41 Identities=24% Similarity=0.207 Sum_probs=27.5
Q ss_pred HHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 19 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 19 ~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
..+...++|+||+|+|+...-+ .. ..+ +.+|..|||+|+..
T Consensus 60 ~~~~~~~~Dvvf~a~~~~~~~~-~~---~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 60 DPEELSDVDVVFLALPHGASKE-LA---PKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp SGHHHTTESEEEE-SCHHHHHH-HH---HHH---HHTTSEEEESSSTT
T ss_pred chhHhhcCCEEEecCchhHHHH-HH---HHH---hhCCcEEEeCCHHH
Confidence 3455689999999999765433 32 222 45788999999754
No 176
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.67 E-value=2.1 Score=37.72 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=37.2
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||++++-+.-+.. +...+|.++||.++..
T Consensus 178 L~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~~---------~~ik~gavVIDvGin~ 233 (297)
T PRK14186 178 LLAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGA---------EMVKPGAVVVDVGIHR 233 (297)
T ss_pred HHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCH---------HHcCCCCEEEEecccc
Confidence 44567765 36788999999999999998764332 2356899999988664
No 177
>PRK10206 putative oxidoreductase; Provisional
Probab=81.31 E-value=7.4 Score=34.89 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=52.5
Q ss_pred CccccCCHHHHHh--cCCEEEEecCChHHHHHHhcCCCcccccCCCC-CEEEEcC-CCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 12 RCRYQPSPDEVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPG-KGYVDVS-TVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 12 Ga~~~~s~~ea~~--~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g-~~ivd~S-T~~p~~~~~la~~~~~~G~~~vda 87 (257)
+.+..+|..|+++ +.|+|++|+|+....+-+. ..+..| .++++.= +.+.+++++|.+.++++|..+.-+
T Consensus 49 ~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~ 121 (344)
T PRK10206 49 HIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAK-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPY 121 (344)
T ss_pred CCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHH-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEE
Confidence 3667789999996 5799999999987766554 123334 4777764 677899999999999988876544
Q ss_pred cC
Q 025140 88 PV 89 (257)
Q Consensus 88 pV 89 (257)
..
T Consensus 122 ~~ 123 (344)
T PRK10206 122 QN 123 (344)
T ss_pred Ee
Confidence 43
No 178
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=81.03 E-value=7.1 Score=29.20 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCC
Q 025140 145 IMGSMMATFSEGLLHSEKVGL--DPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 222 (257)
Q Consensus 145 ~~~~~~~~~~Ea~~la~~~Gl--d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~ 222 (257)
........+.|++..+++.|+ +.+.+.+.+.......+ ...+.|.. |+..+-..+ .--=...+++.++++|++
T Consensus 36 ~~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~---~~~~SM~~-D~~~gr~tE-id~i~G~vv~~a~~~gv~ 110 (125)
T PF08546_consen 36 ARELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP---DNRSSMLQ-DIEAGRPTE-IDYINGYVVRLAKKHGVP 110 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT---TT--HHHH-HHHTTB--S-HHHTHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC---CccccHHH-HHHHccccc-HHHHHHHHHHHHHHHCCC
Confidence 345556778999999999996 44434444433110000 01111111 111111111 111256678999999999
Q ss_pred cHHHHHHHHHHHH
Q 025140 223 TPIAAAANELYKV 235 (257)
Q Consensus 223 ~p~~~~~~~~~~~ 235 (257)
+|..+.+.+....
T Consensus 111 ~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 111 TPVNETIYALVKA 123 (125)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999998887653
No 179
>PLN02522 ATP citrate (pro-S)-lyase
Probab=80.59 E-value=6.3 Score=38.21 Aligned_cols=71 Identities=10% Similarity=-0.010 Sum_probs=52.5
Q ss_pred cCccccCCHHHHHh---cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 11 SRCRYQPSPDEVAA---SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~---~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
.|..+.+|++||++ ++|+.++.+|-+.+.++++ +.+.. ..-..+||-.+-++....+++.+.++++|++++
T Consensus 61 ~~iPVf~tv~eA~~~~~~~~~~vifvp~~~a~da~l---Ea~~a-~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlI 134 (608)
T PLN02522 61 IAIPVHGSIEAACKAHPTADVFINFASFRSAAASSM---EALKQ-PTIRVVAIIAEGVPESDTKQLIAYARANNKVVI 134 (608)
T ss_pred eCccccchHHHHHHhCCCCcEEEEeCChHHhHHHHH---HHHhh-CCCCEEEEECCCCChhhHHHHHHHHHHcCCEEE
Confidence 47778999999997 4799999999888888787 44332 112346666666666667788889999887765
No 180
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=80.42 E-value=1.7 Score=34.68 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=33.3
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCH
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG 67 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p 67 (257)
|...|+++ ..++.+.++++|+||+++..+.-+.. +.+++|.++||+++...
T Consensus 56 L~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~~i~~---------~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 56 LLNKGATVTICHSKTKNLQEITRRADIVVSAVGKPNLIKA---------DWIKPGAVVIDVGINYV 112 (160)
T ss_dssp HHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT-B-G---------GGS-TTEEEEE--CEEE
T ss_pred HHhCCCeEEeccCCCCcccceeeeccEEeeeecccccccc---------ccccCCcEEEecCCccc
Confidence 44567754 25689999999999999998765432 23578999999988766
No 181
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=80.20 E-value=5.4 Score=35.90 Aligned_cols=71 Identities=7% Similarity=0.065 Sum_probs=46.4
Q ss_pred hhh-cCccccCCHHHHHhcCCEEEEecCCh----HHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 8 FYY-SRCRYQPSPDEVAASCDVTFAMLADP----ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 8 ~~~-~Ga~~~~s~~ea~~~advvi~~l~~~----~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
+.+ -|....+|..|++++.|++++++|+. ...+-+. ..+..|+-|+--=...+++++++.+.++++|+
T Consensus 44 ~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~-------~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~ 116 (343)
T TIGR01761 44 LAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALAR-------ALLARGIHVLQEHPLHPRDIQDLLRLAERQGR 116 (343)
T ss_pred HHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHH-------HHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCC
Confidence 444 37777899999998889999888652 2222121 22345543333333347999999999998888
Q ss_pred cEE
Q 025140 83 SFL 85 (257)
Q Consensus 83 ~~v 85 (257)
.+.
T Consensus 117 ~l~ 119 (343)
T TIGR01761 117 RYL 119 (343)
T ss_pred EEE
Confidence 765
No 182
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.11 E-value=2.4 Score=37.11 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=37.2
Q ss_pred hhhcCcccc------CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRYQ------PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~~------~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++. .++++.+++||+||+++..+.-+.. +...+|.++||.++..
T Consensus 175 L~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~~i~~---------~~vk~GavVIDVGin~ 230 (287)
T PRK14173 175 LLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITP---------EMVRPGAVVVDVGINR 230 (287)
T ss_pred HHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCH---------HHcCCCCEEEEccCcc
Confidence 445677652 5788999999999999998764332 2356899999998764
No 183
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=79.77 E-value=4.4 Score=34.96 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=55.0
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC---CHHHHHHHHHHHHHcCCc-EEEe
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGAS-FLEA 87 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~---~p~~~~~la~~~~~~G~~-~vda 87 (257)
|....+++.++-.+.|+|+.|.+.... .+.. . ..+..|+-++-.|+. .++...++.+.+++.|.. |+..
T Consensus 48 ~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~---~---~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~s 120 (265)
T PRK13303 48 AVRVVSSVDALPQRPDLVVECAGHAAL-KEHV---V---PILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLS 120 (265)
T ss_pred CCeeeCCHHHhccCCCEEEECCCHHHH-HHHH---H---HHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeC
Confidence 667788998884568999999997644 3343 1 234567766666664 566778888888888876 5666
Q ss_pred cCCCChHHhhc
Q 025140 88 PVSGSKKPAED 98 (257)
Q Consensus 88 pV~g~~~~a~~ 98 (257)
...|+-.....
T Consensus 121 ga~gg~d~l~~ 131 (265)
T PRK13303 121 GAIGGIDALAA 131 (265)
T ss_pred hHhhCHHHHHH
Confidence 66666554433
No 184
>PRK06823 ornithine cyclodeaminase; Validated
Probab=78.94 E-value=1.4 Score=39.10 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=44.3
Q ss_pred cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHc-CCcEEEe
Q 025140 14 RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT-GASFLEA 87 (257)
Q Consensus 14 ~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~-G~~~vda 87 (257)
+.++|+.|++++||+|++|.+..+. ++.+ +.+.+|..|+-.++-.|+. +++...+-.+ ..-|+|-
T Consensus 181 ~~~~~~~~av~~ADIV~taT~s~~P---~~~~-----~~l~~G~hi~~iGs~~p~~-~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 181 NTTLDAAEVAHAANLIVTTTPSREP---LLQA-----EDIQPGTHITAVGADSPGK-QELDAELVARADKILVDS 246 (315)
T ss_pred EEECCHHHHhcCCCEEEEecCCCCc---eeCH-----HHcCCCcEEEecCCCCccc-ccCCHHHHhhCCEEEECC
Confidence 3479999999999999999987653 2211 2356898988888888854 5665444333 2345664
No 185
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=78.85 E-value=2.1 Score=38.06 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=28.3
Q ss_pred CHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC
Q 025140 18 SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 64 (257)
Q Consensus 18 s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST 64 (257)
+..+..+++|+||+|+|+..+.+-+- .+ ...|..|||+|+
T Consensus 43 ~~~~~~~~~DvvFlalp~~~s~~~~~----~~---~~~g~~VIDlSa 82 (313)
T PRK11863 43 ARRELLNAADVAILCLPDDAAREAVA----LI---DNPATRVIDAST 82 (313)
T ss_pred CchhhhcCCCEEEECCCHHHHHHHHH----HH---HhCCCEEEECCh
Confidence 34456678999999999876654332 22 246889999995
No 186
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.65 E-value=3 Score=36.47 Aligned_cols=50 Identities=10% Similarity=-0.041 Sum_probs=37.0
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||+++.-+.-+..- ...+|.++||.++..
T Consensus 177 L~~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~~i~~~---------~vk~GavVIDvGin~ 232 (282)
T PRK14166 177 LLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSD---------MVKEGVIVVDVGINR 232 (282)
T ss_pred HHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHH---------HcCCCCEEEEecccc
Confidence 44567765 366889999999999999987754322 256899999988654
No 187
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.32 E-value=4.1 Score=38.73 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=50.8
Q ss_pred chhhhhcCccccCCHHHHHhcCCEEEE-ecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 5 NNAFYYSRCRYQPSPDEVAASCDVTFA-MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~advvi~-~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
.+++.+.||++.++. |+. +||+|+- --|+++.+ +.+++|++++-. ..|...+++.+.+.++|+.
T Consensus 47 D~~Y~~aGA~I~~~~-~v~-~~diilkV~~P~~~e~-----------~~l~~g~~li~~--l~p~~~~~l~~~l~~~~it 111 (509)
T PRK09424 47 DAAYREAGAEIVDGA-AVW-QSDIILKVNAPSDDEI-----------ALLREGATLVSF--IWPAQNPELLEKLAARGVT 111 (509)
T ss_pred HHHHHHCCCEEecCc-ccc-cCCEEEEeCCCCHHHH-----------HhcCCCCEEEEE--eCcccCHHHHHHHHHcCCE
Confidence 466888999998775 877 7999973 33333221 346788888876 4455668899999999998
Q ss_pred EEEecCC
Q 025140 84 FLEAPVS 90 (257)
Q Consensus 84 ~vdapV~ 90 (257)
.++.-..
T Consensus 112 ~ia~e~v 118 (509)
T PRK09424 112 VLAMDAV 118 (509)
T ss_pred EEEeecc
Confidence 8776544
No 188
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=78.24 E-value=1.3 Score=39.00 Aligned_cols=66 Identities=6% Similarity=-0.030 Sum_probs=43.1
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcC-CcEEEe
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG-ASFLEA 87 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G-~~~vda 87 (257)
...++|+.|++++||+|++|.+..+. ++.+ +.+++|..|.-..+-.|. .+++...+-.+. .-|+|-
T Consensus 170 v~~~~~~~eav~~aDIV~taT~s~~P---~~~~-----~~l~pg~hV~aiGs~~p~-~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 170 IRPVDNAEAALRDADTITSITNSDTP---IFNR-----KYLGDEYHVNLAGSNYPN-RREAEHSVLNDADIVVTEH 236 (301)
T ss_pred EEEeCCHHHHHhcCCEEEEecCCCCc---EecH-----HHcCCCceEEecCCCCCC-cccCCHHHHHhCCEEEECC
Confidence 45679999999999999999997653 2211 235678777777777774 456654443332 345663
No 189
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=78.14 E-value=7.1 Score=34.40 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=52.2
Q ss_pred cCc-cccCCHHHHHhc--CCEEEEecCChHHHHHHhcCCCcccccCCCCC-EEEEc-CCCCHHHHHHHHHHHHHcCCcEE
Q 025140 11 SRC-RYQPSPDEVAAS--CDVTFAMLADPESAMDVACGKHGAASGMGPGK-GYVDV-STVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 11 ~Ga-~~~~s~~ea~~~--advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~-~ivd~-ST~~p~~~~~la~~~~~~G~~~v 85 (257)
-|. +..+|..+++++ .|+|++|+|++...+-+. .++..|+ ++++. =+.+++++++|.+.++++|..+.
T Consensus 50 ~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 50 FGIAKAYTDLEELLADPDIDAVYIATPNALHAELAL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred cCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 355 478999999986 589999999988776554 2334444 66666 37888999999999998887654
Q ss_pred Eec
Q 025140 86 EAP 88 (257)
Q Consensus 86 dap 88 (257)
-+-
T Consensus 123 v~~ 125 (342)
T COG0673 123 VGF 125 (342)
T ss_pred eeh
Confidence 443
No 190
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=77.90 E-value=4.7 Score=29.82 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=45.2
Q ss_pred CccccCCHHHHHh--cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC---CHHHHHHHHHHHHHcCCcE
Q 025140 12 RCRYQPSPDEVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGASF 84 (257)
Q Consensus 12 Ga~~~~s~~ea~~--~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~---~p~~~~~la~~~~~~G~~~ 84 (257)
+.....++.+.++ ..|+||=| ..++.+.+.+ . +.+..|.-||-.|.. ++...++|.+.++++|.+|
T Consensus 44 ~~~~~~~~~~~~~~~~~dvvVE~-t~~~~~~~~~---~---~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 44 DEAFTTDLEELIDDPDIDVVVEC-TSSEAVAEYY---E---KALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HSCEESSHHHHHTHTT-SEEEE--SSCHHHHHHH---H---HHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred cccccCCHHHHhcCcCCCEEEEC-CCchHHHHHH---H---HHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 4567788989888 89999999 6667776665 2 334578888888843 4457778888888888775
No 191
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.74 E-value=2.8 Score=36.65 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=36.6
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...|+++ ..++.+.++++|+||++++.+.-+.. +.+.+|.++||.++..
T Consensus 178 L~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~---------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 178 LLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTA---------DMVKPGATVIDVGMNR 233 (285)
T ss_pred HHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCH---------HHcCCCCEEEEccccc
Confidence 44566654 24688999999999999997653221 3467899999998654
No 192
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=77.53 E-value=2.2 Score=35.17 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=30.2
Q ss_pred HHHHHhcCCEEEEecCChHH-HHHHhcCCCcccccCCCCCEEEEcCCC
Q 025140 19 PDEVAASCDVTFAMLADPES-AMDVACGKHGAASGMGPGKGYVDVSTV 65 (257)
Q Consensus 19 ~~ea~~~advvi~~l~~~~~-v~~v~~~~~~~~~~l~~g~~ivd~ST~ 65 (257)
+.|.+++||+||++++.+.- +.. +...+|.++||.++.
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~---------d~ik~GavVIDVGi~ 158 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPT---------ELLKDGAICINFASI 158 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCH---------HHcCCCcEEEEcCCC
Confidence 67899999999999998774 332 225689999999966
No 193
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=76.43 E-value=7.2 Score=34.44 Aligned_cols=69 Identities=9% Similarity=-0.013 Sum_probs=42.2
Q ss_pred cCccccCCHHHHHhc--CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHH-H-HHHHHHHHHcCCcEE
Q 025140 11 SRCRYQPSPDEVAAS--CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-S-KLINGHIKATGASFL 85 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~--advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~-~-~~la~~~~~~G~~~v 85 (257)
.|.....|+.|+... .|+.++++|...... ++ ++..+. .-+.+|-.|..-++. . +.+.+..+++|++++
T Consensus 53 ~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v~~-al---~e~~~~--Gvk~~vIisaGf~e~g~~~~~~~~ar~~girvi 125 (300)
T PLN00125 53 LGLPVFNTVAEAKAETKANASVIYVPPPFAAA-AI---LEAMEA--ELDLVVCITEGIPQHDMVRVKAALNRQSKTRLI 125 (300)
T ss_pred cCeeccCCHHHHhhccCCCEEEEecCHHHHHH-HH---HHHHHc--CCCEEEEECCCCCcccHHHHHHHHHhhcCCEEE
Confidence 477888999999976 799999999754443 33 233321 113344445444444 2 334444677787754
No 194
>PRK07340 ornithine cyclodeaminase; Validated
Probab=75.77 E-value=2 Score=37.94 Aligned_cols=62 Identities=10% Similarity=0.125 Sum_probs=43.7
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
+++..|+++++|+||+|.|..+. ++ +. .+++|..|.-.++-.|+. +++...+-.+---|+|-
T Consensus 179 ~~~~~~av~~aDiVitaT~s~~P---l~---~~---~~~~g~hi~~iGs~~p~~-~El~~~~~~~a~v~vD~ 240 (304)
T PRK07340 179 PLDGEAIPEAVDLVVTATTSRTP---VY---PE---AARAGRLVVAVGAFTPDM-AELAPRTVRGSRLYVDD 240 (304)
T ss_pred ECCHHHHhhcCCEEEEccCCCCc---ee---Cc---cCCCCCEEEecCCCCCCc-ccCCHHHHhhCeEEEcC
Confidence 58899999999999999998864 33 22 257899888888888843 56554443332345665
No 195
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=74.96 E-value=10 Score=33.07 Aligned_cols=72 Identities=8% Similarity=0.110 Sum_probs=55.0
Q ss_pred CccccCCHHHHHhc--CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE--Ee
Q 025140 12 RCRYQPSPDEVAAS--CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL--EA 87 (257)
Q Consensus 12 Ga~~~~s~~ea~~~--advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v--da 87 (257)
|..+.++++||++. +|+.+++||.+-+.+.++ +.+-.++ ..+++-+-.+++....++.++++++|.+.+ +|
T Consensus 50 g~PVf~tV~EA~~~~~a~~svI~Vp~~~aadai~---EAida~i--~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPnc 124 (293)
T COG0074 50 GLPVFNTVEEAVKETGANASVIFVPPPFAADAIL---EAIDAGI--KLVVIITEGIPVLDMLELKRYAREKGTRLIGPNC 124 (293)
T ss_pred CccHHHHHHHHHHhhCCCEEEEecCcHHHHHHHH---HHHhCCC--cEEEEEeCCCCHHHHHHHHHHHHhcCCEEECCCC
Confidence 45567899999964 899999999998888777 3222222 345666667999999999999999998776 56
Q ss_pred c
Q 025140 88 P 88 (257)
Q Consensus 88 p 88 (257)
|
T Consensus 125 p 125 (293)
T COG0074 125 P 125 (293)
T ss_pred C
Confidence 5
No 196
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=74.88 E-value=2.6 Score=39.70 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=37.6
Q ss_pred HhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 23 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 23 ~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
+.++|+||.|+|....+...+ . .+++|+++.+++|. +.++++++|+..+|+
T Consensus 388 l~~~DiVInatP~g~~~~~~l----------~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~G 438 (477)
T PRK09310 388 LHRIDIIINCLPPSVTIPKAF----------P--PCVVDINTLPKHSP--YTQYARSQGSSIIYG 438 (477)
T ss_pred cCCCCEEEEcCCCCCcchhHH----------h--hhEEeccCCCCCCH--HHHHHHHCcCEEECc
Confidence 467999999999876432211 1 38999999988875 778888888776543
No 197
>PRK08618 ornithine cyclodeaminase; Validated
Probab=74.51 E-value=3.6 Score=36.62 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=36.5
Q ss_pred cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHH
Q 025140 14 RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 69 (257)
Q Consensus 14 ~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~ 69 (257)
..++++.++++++|+||+|.|..+. ++ + +.+.+|+.|+-..+-.|+.
T Consensus 181 ~~~~~~~~~~~~aDiVi~aT~s~~p---~i---~---~~l~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 181 YVVNSADEAIEEADIIVTVTNAKTP---VF---S---EKLKKGVHINAVGSFMPDM 227 (325)
T ss_pred EEeCCHHHHHhcCCEEEEccCCCCc---ch---H---HhcCCCcEEEecCCCCccc
Confidence 3578899999999999999998753 33 1 3457899998888877744
No 198
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=74.21 E-value=6.7 Score=37.25 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=49.9
Q ss_pred chhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 5 NNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
.+++.+.||++.++ .++ .+||+|+ .|.-|.. +++ +.+++|+++|-... |....++.+.+.++++..
T Consensus 46 D~~Y~~aGA~I~~~-~~~-~~adiIl-kV~~P~~-~e~--------~~l~~g~tli~~l~--p~~n~~ll~~l~~k~it~ 111 (511)
T TIGR00561 46 DRAFESAGAGIVDG-TLF-WQSDIIL-KVNAPSD-AEI--------AELPAGKALVSFIW--PAQNPELMEKLAAKNITV 111 (511)
T ss_pred HHHHHHcCCEEecc-cch-hcCCEEE-EeCCCCH-HHH--------HhcCCCCEEEEEcC--ccCCHHHHHHHHHcCCEE
Confidence 45678899999988 554 4799876 3433322 111 34678999887754 666788999999999988
Q ss_pred EEecCC
Q 025140 85 LEAPVS 90 (257)
Q Consensus 85 vdapV~ 90 (257)
++--..
T Consensus 112 ia~E~v 117 (511)
T TIGR00561 112 LAMDAV 117 (511)
T ss_pred EEeecc
Confidence 776533
No 199
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=74.14 E-value=11 Score=28.46 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=36.2
Q ss_pred hcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCH-HHHHHHHHH
Q 025140 10 YSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGH 76 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p-~~~~~la~~ 76 (257)
..|..+.+++.++.+.+|++|-+- +++.+.+.+ +-.. ..|.-+|-.||..- +..+++.+.
T Consensus 52 ~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~~~~~---~~~~---~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 52 PLGVPVTDDLEELLEEADVVIDFT-NPDAVYDNL---EYAL---KHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp T-SSBEBS-HHHHTTH-SEEEEES--HHHHHHHH---HHHH---HHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred CcccccchhHHHhcccCCEEEEcC-ChHHhHHHH---HHHH---hCCCCEEEECCCCCHHHHHHHHHH
Confidence 457778899999999999887766 777777666 3333 34677777777664 444444443
No 200
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=72.87 E-value=9.4 Score=34.09 Aligned_cols=108 Identities=13% Similarity=0.187 Sum_probs=60.4
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC---CHHHHHHHHHHHHHcCCcEEEec
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGASFLEAP 88 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~---~p~~~~~la~~~~~~G~~~vdap 88 (257)
|.....+..++..+.|+|++|.|+......+. +.+..|+-+|+.... .|+..+++.+.+++.
T Consensus 47 ~v~~~~d~~e~l~~iDVViIctPs~th~~~~~-------~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~-------- 111 (324)
T TIGR01921 47 PVYAVADDEKHLDDVDVLILCMGSATDIPEQA-------PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAA-------- 111 (324)
T ss_pred CccccCCHHHhccCCCEEEEcCCCccCHHHHH-------HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHc--------
Confidence 33444567777788999999998866654443 234567777777542 234444454444332
Q ss_pred CCCChHHhhcCceEEEecC-ChhHHHHHHHHHHHh---cCCceecCC---CchHHHHHHHHHH
Q 025140 89 VSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIM---GKSRFYLGD---VGNGAAMKLVVNM 144 (257)
Q Consensus 89 V~g~~~~a~~g~l~i~~gg-~~~~~~~~~~ll~~~---~~~~~~~G~---~G~a~~~Kl~~n~ 144 (257)
|...++..| |+..+--.+-+.+++ |...++-|+ .|...+++-++..
T Consensus 112 ----------g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~g~s~ghs~a~~~~~Gv 164 (324)
T TIGR01921 112 ----------GNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGPGLSQGHSDAVRRIDGV 164 (324)
T ss_pred ----------CCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCCCcCchhhhhhcccCCc
Confidence 344554444 665555555555666 334444454 3555555555444
No 201
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=72.66 E-value=30 Score=26.47 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=47.3
Q ss_pred EEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC-----CHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEE
Q 025140 30 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV-----DGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 104 (257)
Q Consensus 30 i~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~-----~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~ 104 (257)
+..-++++++..+- . + .-++|||+=+. .|+ ...+.+++...|+.|+..||... .
T Consensus 11 ~s~qlt~~d~~~L~----~----~-GiktVIdlR~~~E~~~~p~-~~~~~~~a~~~gl~y~~iPv~~~-------~---- 69 (135)
T TIGR01244 11 VSPQLTKADAAQAA----Q----L-GFKTVINNRPDREEESQPD-FAQIKAAAEAAGVTYHHQPVTAG-------D---- 69 (135)
T ss_pred EcCCCCHHHHHHHH----H----C-CCcEEEECCCCCCCCCCCC-HHHHHHHHHHCCCeEEEeecCCC-------C----
Confidence 44456666665432 1 1 34788888543 233 22334566778999999999852 1
Q ss_pred ecCChhHHHHHHHHHHHhcCC-ceec
Q 025140 105 AAGDKSLYNTVAPLLDIMGKS-RFYL 129 (257)
Q Consensus 105 ~gg~~~~~~~~~~ll~~~~~~-~~~~ 129 (257)
=+++..+.+..+|+...+. .+||
T Consensus 70 --~~~~~v~~f~~~~~~~~~pvL~HC 93 (135)
T TIGR01244 70 --ITPDDVETFRAAIGAAEGPVLAYC 93 (135)
T ss_pred --CCHHHHHHHHHHHHhCCCCEEEEc
Confidence 1556677888888866544 3567
No 202
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.65 E-value=4.7 Score=35.25 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=37.0
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||++++.+.-+.. +...+|.++||.++..
T Consensus 177 L~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~~i~~---------~~vk~GavVIDvGin~ 232 (284)
T PRK14170 177 LLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKK---------DYIKPGAIVIDVGMDR 232 (284)
T ss_pred HHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCH---------HHcCCCCEEEEccCcc
Confidence 44456654 25688999999999999998764332 2356899999998765
No 203
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=72.44 E-value=37 Score=25.17 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=46.2
Q ss_pred CEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC--H--HHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceE
Q 025140 27 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD--G--DTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLI 102 (257)
Q Consensus 27 dvvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~--p--~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~ 102 (257)
++-+..-|+++++..+-. ..-++|||.-.-. | .....+.+.+++.|..|+.-||.++..
T Consensus 8 ~~~vs~Q~~~~d~~~la~---------~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~-------- 70 (110)
T PF04273_consen 8 DLSVSGQPSPEDLAQLAA---------QGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAI-------- 70 (110)
T ss_dssp TEEEECS--HHHHHHHHH---------CT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT---------
T ss_pred CeEECCCCCHHHHHHHHH---------CCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCC--------
Confidence 455666777787776541 1236788875431 2 234467888999999999999987531
Q ss_pred EEecCChhHHHHHHHHHHHhcCCc-eecCC
Q 025140 103 FLAAGDKSLYNTVAPLLDIMGKSR-FYLGD 131 (257)
Q Consensus 103 i~~gg~~~~~~~~~~ll~~~~~~~-~~~G~ 131 (257)
+.+.++++..+|+.+.+++ .||.+
T Consensus 71 -----~~~~v~~f~~~l~~~~~Pvl~hC~s 95 (110)
T PF04273_consen 71 -----TEEDVEAFADALESLPKPVLAHCRS 95 (110)
T ss_dssp ------HHHHHHHHHHHHTTTTSEEEE-SC
T ss_pred -----CHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3456788888898887664 56755
No 204
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=72.35 E-value=15 Score=31.27 Aligned_cols=149 Identities=12% Similarity=0.167 Sum_probs=96.9
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHH----cCCcEEE-e
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLE-A 87 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~----~G~~~vd-a 87 (257)
.+.+.++.+++.++|+||-.+-...+++.=+| ..+ +...+...++-..|.+-..+ +++...+. .|.+|.. .
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF--~~l-~~~ak~~~il~tNTSSl~lt-~ia~~~~~~srf~GlHFfNPv 159 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLF--KDL-DKIAKSSTILATNTSSLSLT-DIASATQRPSRFAGLHFFNPV 159 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHH--HHH-HhhcccceEEeecccceeHH-HHHhhccChhhhceeeccCCc
Confidence 45678899999999999866655555544443 122 33446666766666666554 33333332 3667653 3
Q ss_pred cCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 025140 88 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD 166 (257)
Q Consensus 88 pV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld 166 (257)
||+.-.+-.+... ..++.|.....+=+.+|+..+-+-+ +| .+.|=+ .+-.+.|++.+-++-..+
T Consensus 160 PvMKLvEVir~~~------TS~eTf~~l~~f~k~~gKttVackDtpG------FIVNRl---LiPyl~ea~r~yerGdAs 224 (298)
T KOG2304|consen 160 PVMKLVEVIRTDD------TSDETFNALVDFGKAVGKTTVACKDTPG------FIVNRL---LIPYLMEAIRMYERGDAS 224 (298)
T ss_pred hhHHHhhhhcCCC------CCHHHHHHHHHHHHHhCCCceeecCCCc------hhhhHH---HHHHHHHHHHHHHhcCCc
Confidence 4554444433322 3568888888888999997766644 67 344433 345678999999999999
Q ss_pred HHHHHHHHhhcCCC
Q 025140 167 PNVLVEVVSQGAIS 180 (257)
Q Consensus 167 ~~~~~~~l~~~~~~ 180 (257)
.+++-..+.-+.++
T Consensus 225 keDIDtaMklGagy 238 (298)
T KOG2304|consen 225 KEDIDTAMKLGAGY 238 (298)
T ss_pred HhhHHHHHhccCCC
Confidence 99998888877654
No 205
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=72.33 E-value=4.1 Score=36.58 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=27.9
Q ss_pred HHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 22 VAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 22 a~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
..+++|+||+|+|+....+-+. .+ +..|+.|||+|+-.
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~----~a---~~aG~~VID~S~~f 102 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAP----QL---LEAGVKVIDLSADF 102 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHH----HH---HhCCCEEEECCccc
Confidence 4578999999999976654443 22 34689999999654
No 206
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=72.32 E-value=9.2 Score=35.70 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=44.4
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCH-------HHHHHHHHHHHHcCCc
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-------DTSKLINGHIKATGAS 83 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p-------~~~~~la~~~~~~G~~ 83 (257)
.|.....|++|+-...|++++++|. +.+.+++ +.+.+. .-..+||- |..-+ ...+++.+.++++|++
T Consensus 50 ~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l---~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 50 LGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVV---EECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred CCccccCCHHHCCCCCCEEEEecCH-HHHHHHH---HHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 4778889999998889999999996 4444455 334332 22334443 32222 2346777888888887
Q ss_pred EE
Q 025140 84 FL 85 (257)
Q Consensus 84 ~v 85 (257)
++
T Consensus 124 vl 125 (447)
T TIGR02717 124 LL 125 (447)
T ss_pred EE
Confidence 65
No 207
>PRK07589 ornithine cyclodeaminase; Validated
Probab=72.31 E-value=3.6 Score=37.07 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=41.9
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEE
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 86 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vd 86 (257)
...++++.|++++||+|++|.++... .-++.+ +.+++|..|.-..+-.|.. +++...+-.+.--|+|
T Consensus 181 v~~~~~~~~av~~ADIIvtaT~S~~~-~Pvl~~-----~~lkpG~hV~aIGs~~p~~-~Eld~~~l~~a~v~vD 247 (346)
T PRK07589 181 IVACRSVAEAVEGADIITTVTADKTN-ATILTD-----DMVEPGMHINAVGGDCPGK-TELHPDILRRARVFVE 247 (346)
T ss_pred EEEeCCHHHHHhcCCEEEEecCCCCC-CceecH-----HHcCCCcEEEecCCCCCCc-ccCCHHHHhcCEEEEC
Confidence 44579999999999999999975431 012211 2356888777777766654 4554433333334566
No 208
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.41 E-value=39 Score=29.73 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=50.4
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-----HHhhcCceEEEecCChhHHHHHHHHHHHhcCCcee
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-----KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 128 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-----~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~ 128 (257)
-.+.+|... -++++++++.+.+++.++.|++-|+.... .-.+.-..++..+++--..+.++++++.-+-+++.
T Consensus 178 ~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~ 256 (316)
T cd03319 178 ARLRVDANQGWTPEEAVELLRELAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGIN 256 (316)
T ss_pred CeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEE
Confidence 468899954 67899999999999999999999996431 11122345666666555566777777755544443
No 209
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=71.30 E-value=5.6 Score=35.98 Aligned_cols=100 Identities=18% Similarity=0.298 Sum_probs=60.7
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 81 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G 81 (257)
|...||++ ..++.+.+++||+||+++.-+.-+..- ...+|.+|||......+.
T Consensus 251 L~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~~d---------~vK~GAvVIDVGIn~~~~------------ 309 (364)
T PLN02616 251 LQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGS---------WIKPGAVVIDVGINPVED------------ 309 (364)
T ss_pred HHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCCHH---------HcCCCCEEEecccccccc------------
Confidence 44556654 467889999999999999987754322 256899999987654210
Q ss_pred CcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHH
Q 025140 82 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 147 (257)
Q Consensus 82 ~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~ 147 (257)
+ ....|. -++ ||-+ |+.+.++-..+..- -|++|.=...-|..|.+.+
T Consensus 310 ------~------~~~~g~--klv-GDVd-fe~v~~~as~ITPV---PGGVGpmTva~Ll~N~~~a 356 (364)
T PLN02616 310 ------A------SSPRGY--RLV-GDVC-YEEACKVASAVTPV---PGGVGPMTIAMLLSNTLTS 356 (364)
T ss_pred ------c------cccCCC--eEE-ecCc-HHHHHhhccccCCC---CCchHHHHHHHHHHHHHHH
Confidence 0 001121 133 3332 45565554444331 2668877777777887754
No 210
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.16 E-value=5.3 Score=34.97 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=32.7
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
..++.+.+++||+||+++..+.-+.. +.+.+|.++||.++..
T Consensus 194 T~~l~~~~k~ADIvV~AvGkp~~i~~---------~~ik~GavVIDvGin~ 235 (284)
T PRK14193 194 TRDLAAHTRRADIIVAAAGVAHLVTA---------DMVKPGAAVLDVGVSR 235 (284)
T ss_pred CCCHHHHHHhCCEEEEecCCcCccCH---------HHcCCCCEEEEccccc
Confidence 35788999999999999998764322 2357899999998665
No 211
>PRK03739 2-isopropylmalate synthase; Validated
Probab=70.89 E-value=1e+02 Score=29.70 Aligned_cols=101 Identities=11% Similarity=0.090 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEe--cCCCChHHh------hc-----C-ceEEEecCChhHHHHHHHHHHHhcCCceec
Q 025140 64 TVDGDTSKLINGHIKATGASFLEA--PVSGSKKPA------ED-----G-QLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 129 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vda--pV~g~~~~a------~~-----g-~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~ 129 (257)
..++++..+|++.+.+.|++++++ |.++..... .. + .+..++-.-+..++++...+.......+++
T Consensus 48 ~~s~~~Ki~ia~~L~~~GV~~IE~GfP~~s~~e~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~~~~~~v~i 127 (552)
T PRK03739 48 PMSPERKLRMFDLLVKIGFKEIEVGFPSASQTDFDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEGAKRAIVHL 127 (552)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCCcChHHHHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcCCCCCEEEE
Confidence 678899999999999999999999 666655411 11 1 222333344444444444433333333333
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025140 130 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG 164 (257)
Q Consensus 130 G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 164 (257)
--.-+-..++...|.-..-.+..+.|+..+++..|
T Consensus 128 ~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~ 162 (552)
T PRK03739 128 YNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELA 162 (552)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Confidence 22223333333334444556667788888888766
No 212
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=70.77 E-value=38 Score=24.62 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=50.6
Q ss_pred HHHHHcCCCHHHHHHHHhhcCCCchhhhcccccccc-CCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 025140 158 LHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIE-SLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA 236 (257)
Q Consensus 158 ~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~-~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a 236 (257)
.+|+.+|++++.+.+.+..+.... .... +.| .|+ +....-++.+.++.++.+++.+....+.+++++-
T Consensus 12 Elc~~~gi~~~~l~eLve~GlIep--------~~~~~~~~--~F~-~~~l~r~~~a~rL~~dl~in~~gialvl~LLd~i 80 (101)
T PRK10265 12 EFCLHTGVSEEELNEIVGLGVIEP--------REIQETTW--VFD-DHAAIVVQRAVRLRHELALDWPGIAVALTLLDEI 80 (101)
T ss_pred HHHHHHCcCHHHHHHHHHCCCeec--------CCCCcccc--eEC-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 578899999999999998875331 1111 111 232 2245678888899999999999999999988876
Q ss_pred HH
Q 025140 237 KS 238 (257)
Q Consensus 237 ~~ 238 (257)
..
T Consensus 81 ~~ 82 (101)
T PRK10265 81 AH 82 (101)
T ss_pred HH
Confidence 43
No 213
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.72 E-value=5 Score=35.08 Aligned_cols=50 Identities=12% Similarity=0.182 Sum_probs=36.8
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||++++-+.-+.. +.+.+|.++||.++..
T Consensus 176 L~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~i~~---------~~vk~GavVIDvGin~ 231 (282)
T PRK14169 176 MVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGA---------DAVKPGAVVIDVGISR 231 (282)
T ss_pred HHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCccCH---------HHcCCCcEEEEeeccc
Confidence 44567753 35688999999999999998775332 2356899999988654
No 214
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=70.40 E-value=15 Score=28.92 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HH------HHHHhhcCCCchhhhcc--ccccccCCCCC--------
Q 025140 136 AAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN-VL------VEVVSQGAISAPMYSLK--GPSMIESLYPT-------- 198 (257)
Q Consensus 136 ~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~-~~------~~~l~~~~~~s~~~~~~--~~~~~~~~~~~-------- 198 (257)
..+++-.|...+....++.|+..+++..|-+++ .+ -|++-+.. |+..+++ +..+..++.+.
T Consensus 24 ~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~--s~~sRN~~~G~~l~~g~~~~~~~~~~~~ 101 (149)
T PF07479_consen 24 DGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCT--SDKSRNRRFGKALGKGGKSIEEAEKEML 101 (149)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHH--HTTSHHHHHHHHHHHTTS-HHHHHHHHT
T ss_pred HcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhc--CCCCCcHHHHHHHHccCCCHHHHHHhhh
Confidence 335566899999999999999999999998887 43 33333321 1111111 22233331110
Q ss_pred CCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 025140 199 AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYK 234 (257)
Q Consensus 199 ~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~ 234 (257)
.-..-....-++.+.+++++.++++|++..+++++.
T Consensus 102 ~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~ 137 (149)
T PF07479_consen 102 GGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILY 137 (149)
T ss_dssp TTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHc
Confidence 001112345677788999999999999999998864
No 215
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=70.13 E-value=7.6 Score=40.13 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=43.8
Q ss_pred cCCHHHHH---hcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE-EEec
Q 025140 16 QPSPDEVA---ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF-LEAP 88 (257)
Q Consensus 16 ~~s~~ea~---~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~-vdap 88 (257)
+.+..++. +++|+||+|+|..-... +. ...+..|+-+++.|.+ .+..+++.+.+++.|+.+ +++-
T Consensus 636 v~D~e~L~~~v~~~DaVIsalP~~~H~~-VA------kaAieaGkHvv~eky~-~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 636 VSDSESLLKYVSQVDVVISLLPASCHAV-VA------KACIELKKHLVTASYV-SEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred cCCHHHHHHhhcCCCEEEECCCchhhHH-HH------HHHHHcCCCEEECcCC-HHHHHHHHHHHHHcCCEEEECCc
Confidence 45655554 57999999999865432 22 1234567777888744 556678888898888876 4444
No 216
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=70.11 E-value=48 Score=28.29 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=47.6
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-HH----hhcCceEEEecCChhHHHHHHHHHHHhcCCc
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-KP----AEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR 126 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-~~----a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~ 126 (257)
-.+.+|... -+++++.++.+.+++.|+.|++-|+...- .. ...-..++..++.-.....++++++.-.-.+
T Consensus 130 ~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~ 206 (265)
T cd03315 130 AELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADA 206 (265)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCE
Confidence 468899865 57899999999999999999999986532 11 1222345666655444556666665444333
No 217
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.09 E-value=6 Score=34.63 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=37.0
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++++.+++||+||+++.-+.-+.. +...+|.++||.++..
T Consensus 179 L~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~---------~~ik~gavVIDvGin~ 234 (284)
T PRK14177 179 LTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKA---------DWISEGAVLLDAGYNP 234 (284)
T ss_pred HHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccCH---------HHcCCCCEEEEecCcc
Confidence 44456653 35688999999999999998775432 2357899999999765
No 218
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=69.76 E-value=5.5 Score=35.16 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=36.2
Q ss_pred hhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEE
Q 025140 7 AFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 59 (257)
Q Consensus 7 ~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~i 59 (257)
...+.|-+ ..+++||++.+|+|++-+||..+ .+|+. +.|.+.+.+|+.+
T Consensus 57 kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q-~~vy~--~~I~p~Lk~G~aL 105 (338)
T COG0059 57 KAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ-KEVYE--KEIAPNLKEGAAL 105 (338)
T ss_pred HHHhcCCE-eecHHHHhhcCCEEEEeCchhhH-HHHHH--HHhhhhhcCCceE
Confidence 34455655 78999999999999999998655 45663 3566777777755
No 219
>PRK06349 homoserine dehydrogenase; Provisional
Probab=69.47 E-value=42 Score=31.12 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=70.3
Q ss_pred CccccCCHHHHHhc--CCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcC-CCCHHHHHHHHHHHHHcCCcEE-Ee
Q 025140 12 RCRYQPSPDEVAAS--CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATGASFL-EA 87 (257)
Q Consensus 12 Ga~~~~s~~ea~~~--advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~S-T~~p~~~~~la~~~~~~G~~~v-da 87 (257)
+..+.+++.+++++ .|+|+.|.+..+...+.. .+.+..|+-||-.. .......+++.+.++++|+.|. ++
T Consensus 57 ~~~~~~d~~~ll~d~~iDvVve~tg~~~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEa 130 (426)
T PRK06349 57 GILLTTDPEELVNDPDIDIVVELMGGIEPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEA 130 (426)
T ss_pred ccceeCCHHHHhhCCCCCEEEECCCCchHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 45677889998864 689998887644333332 23455676666433 1223566788888888888753 44
Q ss_pred cCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcC
Q 025140 88 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM---ATFSEGLLHSEKVG 164 (257)
Q Consensus 88 pV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~---~~~~Ea~~la~~~G 164 (257)
.|.|+- ..++.++..+ -+.++..+-++-+|. .|+++.-+. ..+.|++.-|++.|
T Consensus 131 sV~ggi----------------Pii~~l~~~l--~~~~I~~I~GIlnGT-----~nyIl~~m~~~g~~f~~al~~Aq~~G 187 (426)
T PRK06349 131 AVAGGI----------------PIIKALREGL--AANRITRVMGIVNGT-----TNYILTKMTEEGLSFEDALKEAQRLG 187 (426)
T ss_pred EeeccC----------------chHHHHHhhc--ccCCeeEEEEEEeCc-----HHHHHhhhhhcCCCHHHHHHHHHHcC
Confidence 444442 2344555543 233343332221222 244433222 25788888888877
Q ss_pred C
Q 025140 165 L 165 (257)
Q Consensus 165 l 165 (257)
.
T Consensus 188 y 188 (426)
T PRK06349 188 Y 188 (426)
T ss_pred C
Confidence 5
No 220
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=69.08 E-value=56 Score=29.31 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=43.1
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCChHH-----hhcCceEEEecCChhHHHHHHHHHHH
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSKKP-----AEDGQLIFLAAGDKSLYNTVAPLLDI 121 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~~~-----a~~g~l~i~~gg~~~~~~~~~~ll~~ 121 (257)
-.+.||... -+++++.++.+.+++.++.|++-|+.-.-.. ...-..++.++..-.....++++++.
T Consensus 187 ~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~ 258 (355)
T cd03321 187 VGLMVDYNQSLTVPEAIERGQALDQEGLTWIEEPTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA 258 (355)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHcCCCCEEECCCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh
Confidence 368999975 7789999999999999999999999644211 11222355544333334455555543
No 221
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=68.95 E-value=6.1 Score=34.86 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=36.0
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||+++..+.-+.. +...+|.++||.++..
T Consensus 187 L~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~~---------~~vk~gavVIDvGin~ 242 (299)
T PLN02516 187 LLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKG---------DWIKPGAAVIDVGTNA 242 (299)
T ss_pred HHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCH---------HHcCCCCEEEEeeccc
Confidence 44556654 35688999999999999988643221 2356899999988654
No 222
>PRK05568 flavodoxin; Provisional
Probab=68.80 E-value=48 Score=25.07 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=53.3
Q ss_pred HHHhcCCEEEEecCChH-------HHHHHhcCCCcccccCCCCCEEEEcCC---CCHHHHHHHHHHHHHcCCcEEEecCC
Q 025140 21 EVAASCDVTFAMLADPE-------SAMDVACGKHGAASGMGPGKGYVDVST---VDGDTSKLINGHIKATGASFLEAPVS 90 (257)
Q Consensus 21 ea~~~advvi~~l~~~~-------~v~~v~~~~~~~~~~l~~g~~ivd~ST---~~p~~~~~la~~~~~~G~~~vdapV~ 90 (257)
.-+.++|.|++..|... .+...+ +.+.. ..+++.++-.+| ......+.+.+.++..|..++..|+.
T Consensus 44 ~~~~~~d~iilgsp~y~~~~~~~~~~~~f~---~~~~~-~~~~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~~~~ 119 (142)
T PRK05568 44 DDVKGADVVALGSPAMGDEVLEEGEMEPFV---ESISS-LVKGKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNEGLI 119 (142)
T ss_pred HHHHhCCEEEEECCccCcccccchhHHHHH---HHhhh-hhCCCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCCcEE
Confidence 35678999999998742 455555 22222 235665444444 33567788999998889888776541
Q ss_pred CChHHhhcCceEEEec-CChhHHHHHHHHHHHh
Q 025140 91 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIM 122 (257)
Q Consensus 91 g~~~~a~~g~l~i~~g-g~~~~~~~~~~ll~~~ 122 (257)
+-+ -+++.+++++.+-+.+
T Consensus 120 -------------~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 120 -------------VNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred -------------EecCCCHHHHHHHHHHHHHH
Confidence 112 3456777777765554
No 223
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.76 E-value=6.1 Score=34.61 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=32.2
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
..++.+.+++||+||++++-+.-+.. +.+.+|.++||.++..
T Consensus 191 T~~l~~~~~~ADIvV~AvG~p~~i~~---------~~ik~GavVIDvGin~ 232 (287)
T PRK14181 191 SENLTEILKTADIIIAAIGVPLFIKE---------EMIAEKAVIVDVGTSR 232 (287)
T ss_pred CCCHHHHHhhCCEEEEccCCcCccCH---------HHcCCCCEEEEecccc
Confidence 46688999999999999998764332 2356899999988654
No 224
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.42 E-value=6.4 Score=34.38 Aligned_cols=50 Identities=8% Similarity=0.111 Sum_probs=36.5
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||+++..+.-+..- ...+|.++||.++..
T Consensus 177 L~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~~i~~~---------~vk~gavvIDvGin~ 232 (281)
T PRK14183 177 LLNANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITED---------MVKEGAIVIDIGINR 232 (281)
T ss_pred HHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCcccccCHH---------HcCCCcEEEEeeccc
Confidence 44556653 356888999999999999987644322 356899999988655
No 225
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=68.34 E-value=67 Score=30.47 Aligned_cols=103 Identities=13% Similarity=0.015 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEecCCCChH-Hh----------hcCceEEEecCChhHHHHHHHHHHHhcCCceecCCC
Q 025140 64 TVDGDTSKLINGHIKATGASFLEAPVSGSKK-PA----------EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV 132 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vdapV~g~~~-~a----------~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~ 132 (257)
+.+++...++++.+.+.|++++++.....++ .. ...++..++-+.++.++++...+...+...+++--.
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~~~ 98 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFIA 98 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEEEc
Confidence 4689999999999999999999974433321 11 112344454455666555555444334444444222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 025140 133 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD 166 (257)
Q Consensus 133 G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld 166 (257)
.+-..++...|.-..-.+..+.|+..+++..|..
T Consensus 99 ~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~ 132 (494)
T TIGR00973 99 TSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD 132 (494)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 2333333333433455566677888888877753
No 226
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=68.10 E-value=6.6 Score=35.37 Aligned_cols=38 Identities=18% Similarity=0.061 Sum_probs=27.0
Q ss_pred HHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC
Q 025140 21 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 65 (257)
Q Consensus 21 ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~ 65 (257)
+.++++|+||+|+|+..+.+-+- .+ ...|..|||+|..
T Consensus 65 ~~~~~~D~vf~a~p~~~s~~~~~----~~---~~~g~~VIDlS~~ 102 (344)
T PLN02383 65 DSFDGVDIALFSAGGSISKKFGP----IA---VDKGAVVVDNSSA 102 (344)
T ss_pred HHHcCCCEEEECCCcHHHHHHHH----HH---HhCCCEEEECCch
Confidence 55689999999999875544321 12 2468899999953
No 227
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=67.74 E-value=2.6 Score=37.34 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=33.9
Q ss_pred cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHc
Q 025140 14 RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT 80 (257)
Q Consensus 14 ~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~ 80 (257)
..++|+.+++++||+|++|.+..... -++. .+.+.+|..|+-.++-.|+. +++...+-..
T Consensus 181 ~~~~~~~~av~~aDii~taT~s~~~~-P~~~-----~~~l~~g~hi~~iGs~~~~~-~El~~~~~~~ 240 (313)
T PF02423_consen 181 VAVDSAEEAVRGADIIVTATPSTTPA-PVFD-----AEWLKPGTHINAIGSYTPGM-RELDDELLKR 240 (313)
T ss_dssp EEESSHHHHHTTSSEEEE----SSEE-ESB------GGGS-TT-EEEE-S-SSTTB-ESB-HHHHHC
T ss_pred eeccchhhhcccCCEEEEccCCCCCC-cccc-----HHHcCCCcEEEEecCCCCch-hhcCHHHhcc
Confidence 56899999999999999999876510 1221 12367888888888887754 4555444433
No 228
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.51 E-value=6.7 Score=34.48 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=32.1
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
.++.+.+++||+||++++-+.-+.. +...+|.++||.++..
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~i~~---------~~vk~gavVIDvGin~ 236 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEFVKA---------DMVKEGAVVIDVGTTR 236 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH---------HHcCCCCEEEEecCcc
Confidence 5688999999999999998774332 2356899999988654
No 229
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.25 E-value=6.1 Score=34.59 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=35.3
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||+++..+.-+.. +.+.+|.++||.+...
T Consensus 178 L~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG~p~~i~~---------~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 178 LLNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITA---------DMVKEGAVVIDVGVNR 233 (284)
T ss_pred HHHCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCH---------HHcCCCCEEEEeeccc
Confidence 34456643 25678899999999999987763221 2357899999988654
No 230
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.93 E-value=7.1 Score=34.23 Aligned_cols=95 Identities=15% Similarity=0.239 Sum_probs=59.5
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 81 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G 81 (257)
|...||++ ..++.+.+++||+||+++.-+.-+..- ...+|.++||.+.....
T Consensus 179 L~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~~i~~~---------~vk~GavVIDvGin~~~------------- 236 (288)
T PRK14171 179 LLKENCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAE---------YFNPESIVIDVGINRIS------------- 236 (288)
T ss_pred HHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCCccCHH---------HcCCCCEEEEeeccccC-------------
Confidence 44566654 366888999999999999987644322 35689999998865320
Q ss_pred CcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHH
Q 025140 82 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS 148 (257)
Q Consensus 82 ~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~ 148 (257)
.|. ++ ||-+ |+.+++.-..+.. .-|++|.=+..-|..|++.+.
T Consensus 237 ----------------~gk---l~-GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~v~a~ 279 (288)
T PRK14171 237 ----------------GNK---II-GDVD-FENVKSKVKYITP---VPGGIGPMTIAFLLKNTVKAF 279 (288)
T ss_pred ----------------CCC---eE-CCcc-HHHHHhhceEeCC---CCCCcHHHHHHHHHHHHHHHH
Confidence 122 33 4443 4455544333322 126688777777888877543
No 231
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.81 E-value=6.9 Score=34.15 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=36.1
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||++++-+.-+.. +...+|.++||..+..
T Consensus 178 L~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~~---------~~ik~gavVIDvGin~ 233 (278)
T PRK14172 178 LLNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDE---------EYVKEGAIVIDVGTSS 233 (278)
T ss_pred HHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCH---------HHcCCCcEEEEeeccc
Confidence 44566654 35688999999999999998774332 2356899999986443
No 232
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.78 E-value=6.9 Score=34.42 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=59.4
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 81 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G 81 (257)
|...||++ ..++.+.+++||+||+++..+.-+..- ...+|.++||..+...+. |
T Consensus 180 L~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~~i~~~---------~ik~gaiVIDVGin~~~~-----------~ 239 (294)
T PRK14187 180 LLGENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYS---------WIKKGAIVIDVGINSIEE-----------G 239 (294)
T ss_pred HhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHH---------HcCCCCEEEEecccccCC-----------C
Confidence 34456654 356889999999999999987754322 256899999987654210 1
Q ss_pred CcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceec-CCCchHHHHHHHHHHHHHH
Q 025140 82 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIMGS 148 (257)
Q Consensus 82 ~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~-G~~G~a~~~Kl~~n~~~~~ 148 (257)
. ... ++ ||-+ |+.+.+.-.. ++-+ |++|.=+..-|..|++.+.
T Consensus 240 ~---------------~~k---l~-GDvd-~e~v~~~a~~----iTPVPGGVGp~T~a~L~~N~~~a~ 283 (294)
T PRK14187 240 G---------------VKK---FV-GDVD-FAEVKKKASA----ITPVPGGVGPMTIAFLMVNTVIAA 283 (294)
T ss_pred C---------------ccc---ee-CCcc-HHHHhhhccE----ecCCCCCChHHHHHHHHHHHHHHH
Confidence 0 001 33 4432 4445443333 2333 6788888888888887543
No 233
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.43 E-value=8.5 Score=33.72 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=36.9
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.++++|+||.+++.+.-+.. +.+.+|.++||.++..
T Consensus 179 L~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~---------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 179 LLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPG---------EWIKPGAIVIDVGINR 234 (285)
T ss_pred HHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccH---------HHcCCCcEEEEccccc
Confidence 44566643 35688999999999999987764432 3357899999998655
No 234
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=66.36 E-value=6.2 Score=31.69 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=26.0
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 64 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST 64 (257)
+++.+.++++|+||++++.++ + +. .+ .+.++.++||.+.
T Consensus 79 ~~l~~~l~~aDiVIsat~~~~-i---i~-~~----~~~~~~viIDla~ 117 (168)
T cd01080 79 KNLKEHTKQADIVIVAVGKPG-L---VK-GD----MVKPGAVVIDVGI 117 (168)
T ss_pred hhHHHHHhhCCEEEEcCCCCc-e---ec-HH----HccCCeEEEEccC
Confidence 467778889999999998875 2 21 11 2345677777764
No 235
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=66.25 E-value=7.3 Score=35.00 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=36.9
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||+++.-+.-+..- .+.+|.+|||.++..
T Consensus 234 L~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d---------~vk~GavVIDVGin~ 289 (345)
T PLN02897 234 LQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGS---------WLKPGAVVIDVGTTP 289 (345)
T ss_pred HHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcCccCHH---------HcCCCCEEEEccccc
Confidence 44566653 367899999999999999987744322 256899999988653
No 236
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.69 E-value=7.5 Score=34.00 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=35.8
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+..++||+||++++-+.-+.. +...+|.++||.++..
T Consensus 178 L~~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~---------~~vk~gavVIDvGin~ 233 (282)
T PRK14180 178 LLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITA---------DMVKEGAVVIDVGINH 233 (282)
T ss_pred HHHCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcCcCCH---------HHcCCCcEEEEecccc
Confidence 44556643 36788999999999999998764332 2356899999987543
No 237
>PRK06046 alanine dehydrogenase; Validated
Probab=65.42 E-value=4.4 Score=36.12 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=42.9
Q ss_pred cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 14 RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 14 ~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
..++++.++++ +|+|++|.|+.+. ++. .+.+++|+.|.-.++-.|.. +++...+-.+.--|+|-
T Consensus 183 ~~~~~~~~~l~-aDiVv~aTps~~P---~~~-----~~~l~~g~hV~~iGs~~p~~-~El~~~~~~~a~vvvD~ 246 (326)
T PRK06046 183 TVAEDIEEACD-CDILVTTTPSRKP---VVK-----AEWIKEGTHINAIGADAPGK-QELDPEILLRAKVVVDD 246 (326)
T ss_pred EEeCCHHHHhh-CCEEEEecCCCCc---Eec-----HHHcCCCCEEEecCCCCCcc-ccCCHHHHhCCcEEECC
Confidence 45789999997 9999999998653 221 12357888888888877743 56655443333345564
No 238
>PRK06270 homoserine dehydrogenase; Provisional
Probab=65.25 E-value=15 Score=32.91 Aligned_cols=120 Identities=23% Similarity=0.248 Sum_probs=64.1
Q ss_pred CCHHHHHh--cCCEEEEecCChHH----HHHHhcCCCcccccCCCCCEEEEcCCCCH-HHHHHHHHHHHHcCCcEE-Eec
Q 025140 17 PSPDEVAA--SCDVTFAMLADPES----AMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL-EAP 88 (257)
Q Consensus 17 ~s~~ea~~--~advvi~~l~~~~~----v~~v~~~~~~~~~~l~~g~~ivd~ST~~p-~~~~~la~~~~~~G~~~v-dap 88 (257)
.++.|+++ +.|+|+.|.|+... ..+.+ ...+..|+-||-.+.-+. ....++.+.++++|..|. ++.
T Consensus 79 ~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~------~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~ 152 (341)
T PRK06270 79 ISGLEVIRSVDADVVVEATPTNIETGEPALSHC------RKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEAT 152 (341)
T ss_pred CCHHHHhhccCCCEEEECCcCcccccchHHHHH------HHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeee
Confidence 47777774 57888888886322 12222 223445666655443221 234567777777777653 454
Q ss_pred CCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcCC
Q 025140 89 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM---MATFSEGLLHSEKVGL 165 (257)
Q Consensus 89 V~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~---~~~~~Ea~~la~~~Gl 165 (257)
|.++-+ .++.++.++. +.++..+-.+=+|.. |++..-+ -..+.|++.-|++.|.
T Consensus 153 v~~glP----------------ii~~l~~~l~--g~~I~~I~GIlnGT~-----nyIl~~m~~~g~~f~~al~~Aq~~G~ 209 (341)
T PRK06270 153 VGGAMP----------------IINLAKETLA--GNDIKSIKGILNGTT-----NYILTRMEEEGLSYEQALAEAQELGY 209 (341)
T ss_pred eeechh----------------HHHHHHhhcc--cCceEEEEEEEeCcH-----HHHHHHHhhcCCCHHHHHHHHHHcCC
Confidence 444432 4455666543 444544433222221 3332211 2458899999998886
No 239
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.05 E-value=8.5 Score=33.75 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.3
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...|+++ ..++.+.+++||+||++++.+.-+.. +.+.+|.++||.++..
T Consensus 178 L~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~---------~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 178 LLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTK---------DVVKEGAVIIDVGNTP 233 (286)
T ss_pred HHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCH---------HHcCCCcEEEEcCCCc
Confidence 44556643 24578899999999999998663221 1246788999988643
No 240
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=64.94 E-value=26 Score=30.02 Aligned_cols=30 Identities=7% Similarity=0.039 Sum_probs=17.8
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHHcCCcEEEec
Q 025140 57 KGYVDVSTVDGDTSKLINGHIKATGASFLEAP 88 (257)
Q Consensus 57 ~~ivd~ST~~p~~~~~la~~~~~~G~~~vdap 88 (257)
.++||+| +|+...++...+.++|.+++-+|
T Consensus 62 DvVid~t--~p~~~~~~~~~al~~G~~vvigt 91 (257)
T PRK00048 62 DVLIDFT--TPEATLENLEFALEHGKPLVIGT 91 (257)
T ss_pred CEEEECC--CHHHHHHHHHHHHHcCCCEEEEC
Confidence 4566666 45555566666666666666554
No 241
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.85 E-value=8.7 Score=33.84 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=54.3
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHh
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 96 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a 96 (257)
.++.+.+++||+||+++.-+.-+.. +.+.+|.++||.++.... +.|
T Consensus 200 ~~l~~~~~~ADIvVsAvGkp~~i~~---------~~ik~gavVIDvGin~~~-----------------~~~-------- 245 (297)
T PRK14168 200 KNLARHCQRADILIVAAGVPNLVKP---------EWIKPGATVIDVGVNRVG-----------------TNE-------- 245 (297)
T ss_pred cCHHHHHhhCCEEEEecCCcCccCH---------HHcCCCCEEEecCCCccC-----------------ccc--------
Confidence 4688999999999999987664322 235689999998865421 000
Q ss_pred hcCceEEEecCChhHHHHHHHHHHHhcCCceec-CCCchHHHHHHHHHHHHH
Q 025140 97 EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIMG 147 (257)
Q Consensus 97 ~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~-G~~G~a~~~Kl~~n~~~~ 147 (257)
..|. ..++ ||-+ |+.+.+.-..+ +-+ |++|.=+..-|..|++.+
T Consensus 246 ~~g~-~~~~-GDVd-fe~v~~~a~~i----TPVPGGVGp~T~a~L~~N~~~a 290 (297)
T PRK14168 246 STGK-AILS-GDVD-FDAVKEIAGKI----TPVPGGVGPMTIAMLMRNTLKS 290 (297)
T ss_pred cCCC-ccee-cccc-HHHHHhhccEe----cCCCCCchHHHHHHHHHHHHHH
Confidence 0111 1123 4443 44454443333 333 678888888888887754
No 242
>PRK00915 2-isopropylmalate synthase; Validated
Probab=64.72 E-value=1.3e+02 Score=28.63 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEe--cCCCChHHh---------hcCceEEEecCChhHHHHHHHHHHHhcCCceecCCC
Q 025140 64 TVDGDTSKLINGHIKATGASFLEA--PVSGSKKPA---------EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV 132 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vda--pV~g~~~~a---------~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~ 132 (257)
..+++...++++.+.+.|++++++ |.++..... ..-++..++-+..+.++++.+.+...+...+++--.
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~ 101 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIA 101 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEEC
Confidence 578899999999999999999998 433221111 112334444455555666665555555544443222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 025140 133 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD 166 (257)
Q Consensus 133 G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld 166 (257)
.+-.-++...|.-..-.+..+.++..++++.|..
T Consensus 102 ~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~ 135 (513)
T PRK00915 102 TSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDD 135 (513)
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 2222223333333445566677888888887753
No 243
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=64.71 E-value=94 Score=26.88 Aligned_cols=207 Identities=16% Similarity=0.139 Sum_probs=119.3
Q ss_pred hhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 8 FYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 8 ~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
+...|...+.+-.+..+.+|++++++- |..+.+|+ .++-.....+++++..--..+=. .+.+.+- ...+. .
T Consensus 44 ~~~~g~~~~~~n~~~~~~s~v~~~svK-p~~i~~vl---s~~~~~~~~~~iivS~aaG~tl~--~l~~~l~-~~~rv--i 114 (267)
T KOG3124|consen 44 FEALGVKTVFTNLEVLQASDVVFLSVK-PQVIESVL---SEIKPKVSKGKIIVSVAAGKTLS--SLESKLS-PPTRV--I 114 (267)
T ss_pred hhcCCceeeechHHHHhhccceeEeec-chhHHHHh---hcCccccccceEEEEEeecccHH--HHHHhcC-CCCce--E
Confidence 666788777666999999999999997 57778888 45544466888888775433221 2222222 11122 2
Q ss_pred cC-CCChHHhhcCceEEEecC--ChhHHHHHHHHHHHhcCCce--------ecCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 025140 88 PV-SGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRF--------YLGDVGNGAAMKLVVNMIMGSMMATFSEG 156 (257)
Q Consensus 88 pV-~g~~~~a~~g~l~i~~gg--~~~~~~~~~~ll~~~~~~~~--------~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea 156 (257)
.+ .-.|....+|..++-.|. ..+..+.++.+|...|.-.. +.|=.|+|= .+.+..+.+++
T Consensus 115 RvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~iDavTgLsGSgP-------Ay~f~~ieaLa-- 185 (267)
T KOG3124|consen 115 RVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCIDAVTGLSGSGP-------AYVFVAIEALA-- 185 (267)
T ss_pred EecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhhhHHhhccCCcH-------HHHHHHHHHHh--
Confidence 23 334556666664343443 23556778999999886311 112123332 22233333333
Q ss_pred HHHHHHcCCCHHHHHHHHhhcC-CCchhhhcc--ccccccCCC-CCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 025140 157 LLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLK--GPSMIESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANEL 232 (257)
Q Consensus 157 ~~la~~~Gld~~~~~~~l~~~~-~~s~~~~~~--~~~~~~~~~-~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~ 232 (257)
.-+-+.|++.+.-++.-..+- +...+...- =|..++.+. +|+=+ .-+.+...++-|++.-+++++.+-
T Consensus 186 -dGgVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~SPgG~-------TI~glh~LE~ggfRs~linaVeaa 257 (267)
T KOG3124|consen 186 -DGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVCSPGGT-------TIYGLHALEKGGFRSGLINAVEAA 257 (267)
T ss_pred -ccccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCCCCCcc-------hHHHHHHHHhCCchhHHHHHHHHH
Confidence 346689999988777766542 333332221 244454443 34211 223456677889999999988888
Q ss_pred HHHHHHCC
Q 025140 233 YKVAKSHG 240 (257)
Q Consensus 233 ~~~a~~~g 240 (257)
-.++.+.|
T Consensus 258 ~~r~~el~ 265 (267)
T KOG3124|consen 258 TKRARELG 265 (267)
T ss_pred HHHHHHhc
Confidence 77776543
No 244
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=64.08 E-value=4.8 Score=36.80 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=25.8
Q ss_pred HhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 23 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 23 ~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
++++|+||+|+|+..+ .++. +.+..|..|||+|+..
T Consensus 102 ~~~~DvVf~Alp~~~s-~~i~-------~~~~~g~~VIDlSs~f 137 (381)
T PLN02968 102 FSDVDAVFCCLPHGTT-QEII-------KALPKDLKIVDLSADF 137 (381)
T ss_pred hcCCCEEEEcCCHHHH-HHHH-------HHHhCCCEEEEcCchh
Confidence 5889999999998543 3343 2234678999999744
No 245
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=63.96 E-value=64 Score=26.33 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHHHcCCcEEEecCCCChHHhhc------CceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHH-
Q 025140 74 NGHIKATGASFLEAPVSGSKKPAED------GQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM- 146 (257)
Q Consensus 74 a~~~~~~G~~~vdapV~g~~~~a~~------g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~- 146 (257)
++.++..|++|+|-.-.-.|..-.. =+.++++|... .=+.++.+-+.-+. +.-=|+.|+|.....+.++-.
T Consensus 86 AqiLealgVD~IDESEVLTpAD~~~HI~K~~F~vPFVcGarn-LGEALRRI~EGAaM-IRtKGEaGTGnvveAVrH~R~i 163 (208)
T PF01680_consen 86 AQILEALGVDYIDESEVLTPADEENHIDKHNFKVPFVCGARN-LGEALRRIAEGAAM-IRTKGEAGTGNVVEAVRHMRTI 163 (208)
T ss_dssp HHHHHHTT-SEEEEETTS--S-SS----GGG-SS-EEEEESS-HHHHHHHHHTT-SE-EEEETTTTST-THHHHHHHHHH
T ss_pred hhhHHHhCCceeccccccccccccccccchhCCCCeEecCCC-HHHHHhhHHhhhhh-hcccCCCCCCcHHHHHHHHHHH
Confidence 4567788999999987777765422 13367777643 22445555443322 334488999988777665421
Q ss_pred -----HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 025140 147 -----GSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 177 (257)
Q Consensus 147 -----~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~ 177 (257)
...-.---|.+.+|++.+.+.+.+.++-..+
T Consensus 164 ~~eI~~l~~~~~~el~~~Ak~~~ap~eLv~~~~~~g 199 (208)
T PF01680_consen 164 NGEIRRLQNMDDEELFAFAKEIGAPYELVKEVAELG 199 (208)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHTCGHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHCCCHHHHHHHHHHC
Confidence 1111223488899999999988777776664
No 246
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.74 E-value=8.2 Score=33.84 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=36.9
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.++++|+||.++.-+.-+.. +...+|.++||.++..
T Consensus 184 L~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~~---------~~vk~gavVIDvGin~ 239 (287)
T PRK14176 184 LLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKA---------DMVKEGAVIFDVGITK 239 (287)
T ss_pred HHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCccccCH---------HHcCCCcEEEEecccc
Confidence 44566652 35788999999999999988764321 1356899999999864
No 247
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=63.59 E-value=48 Score=23.14 Aligned_cols=69 Identities=22% Similarity=0.216 Sum_probs=51.3
Q ss_pred HHHHHcCCCHHHHHHHHhhcCCCchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 025140 158 LHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 237 (257)
Q Consensus 158 ~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 237 (257)
.+|+..|++++.+.+.+..+.... ....+. +-|+ ......++.+.++-++.+++++....+.+++++-.
T Consensus 5 e~~~~~~i~~~~l~~lve~Gli~p--------~~~~~~--~~f~-~~~l~rl~~~~rL~~Dl~in~~gi~lil~LLd~i~ 73 (84)
T PF13591_consen 5 EFCEACGIEPEFLRELVEEGLIEP--------EGEEEE--WYFS-EEDLARLRRIRRLHRDLGINLEGIALILDLLDRIE 73 (84)
T ss_pred HHHHHHCcCHHHHHHHHHCCCeee--------cCCCCe--eeEC-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 589999999999999998875331 111122 2244 23467788899999999999999999999888753
No 248
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=62.99 E-value=6.8 Score=34.63 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccC-CCCCEEEEcC
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVS 63 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l-~~g~~ivd~S 63 (257)
++..+++.++|+||+|.+.+.. .+.+ ..+.... .++.++||.+
T Consensus 230 ~~~~~~l~~aDvVi~at~~~~~-~~~~---~~~~~~~~~~~~~viDla 273 (311)
T cd05213 230 DELLELLNEADVVISATGAPHY-AKIV---ERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred HHHHHHHhcCCEEEECCCCCch-HHHH---HHHHhhCCCCCeEEEEeC
Confidence 3456777888888888887765 2222 1111111 2567888888
No 249
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.91 E-value=9 Score=33.50 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=35.8
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||++++-+.-+.. +...+|.++||.++..
T Consensus 177 L~~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~~i~~---------~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 177 LLERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVKG---------AWVKEGAVVIDVGMNR 232 (282)
T ss_pred HHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCH---------HHcCCCCEEEEeecee
Confidence 34456654 35788999999999999987653322 2356899999988654
No 250
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=62.86 E-value=17 Score=31.83 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=54.4
Q ss_pred CCcchhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcC
Q 025140 2 KTPNNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 81 (257)
Q Consensus 2 ~~~~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G 81 (257)
|...+.|.+.|+.+.+.+.|+-++.-+||..=.-+.++++-+ -.+|-.++|.|---....+...++..+.|
T Consensus 44 ~~Vv~~L~~~g~~fve~l~e~p~~~~VIfsAHGVs~~v~~~a---------~~r~l~v~DATCPlVtKvh~~v~~~~~~G 114 (294)
T COG0761 44 RYVVDRLREKGAIFVEELDEVPDGATVIFSAHGVSPAVREEA---------KERGLKVIDATCPLVTKVHKEVERYAREG 114 (294)
T ss_pred HHHHHHHHHcCCEeccccccCCCCCEEEEECCCCCHHHHHHH---------HHCCCEEEecCCCcchHHHHHHHHHHhCC
Confidence 344577888888888888777766666666666667666554 13677888888888888888888888877
Q ss_pred CcEE
Q 025140 82 ASFL 85 (257)
Q Consensus 82 ~~~v 85 (257)
-+.|
T Consensus 115 ~~iI 118 (294)
T COG0761 115 YEII 118 (294)
T ss_pred CEEE
Confidence 6543
No 251
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.26 E-value=34 Score=30.74 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=55.8
Q ss_pred cccCCHHHHHhcC--CEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcC-CCCHHHHHHHHHHHHHcCCcEEEecCC
Q 025140 14 RYQPSPDEVAASC--DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATGASFLEAPVS 90 (257)
Q Consensus 14 ~~~~s~~ea~~~a--dvvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~S-T~~p~~~~~la~~~~~~G~~~vdapV~ 90 (257)
+...|-.|++++. |+|.+..|++...+-+.. ++. ....++++.- ..+.++.++|-+.++++|+.+.|+-..
T Consensus 59 k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l----~l~--~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~ 132 (351)
T KOG2741|consen 59 KAYGSYEELAKDPEVDVVYISTPNPQHYEVVML----ALN--KGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWW 132 (351)
T ss_pred ccccCHHHHhcCCCcCEEEeCCCCccHHHHHHH----HHH--cCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeee
Confidence 6779999999875 999999999988776652 221 2234777764 588899999999999999988888654
Q ss_pred CC
Q 025140 91 GS 92 (257)
Q Consensus 91 g~ 92 (257)
.-
T Consensus 133 R~ 134 (351)
T KOG2741|consen 133 RF 134 (351)
T ss_pred ec
Confidence 43
No 252
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=62.21 E-value=9.1 Score=30.76 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=67.5
Q ss_pred EEEE-cCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCC---c---eecC
Q 025140 58 GYVD-VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS---R---FYLG 130 (257)
Q Consensus 58 ~ivd-~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~---~---~~~G 130 (257)
.||+ .++-.|+....+++.+.+.|+.++|.=+.-- .+.=.+++.++|+.+.+++++.-|..++.. . ..-+
T Consensus 6 LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~---g~~~a~i~lisgs~dav~~le~~l~~l~~~~~L~v~m~rt~ 82 (176)
T COG2716 6 LVITAVGADRPGLVNTLARAVASSGCNWLESRLAML---GEEFAGIMLISGSWDAVTLLEATLPLLGAELDLLVVMKRTG 82 (176)
T ss_pred EEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHh---hcceeEEEEEeeCHHHHHHHHHHhhcccccCCeEEEEeecC
Confidence 3444 3788999999999999999999998754211 111235788999999999999999988872 1 1112
Q ss_pred CCc-hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 025140 131 DVG-NGAA----MKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL 170 (257)
Q Consensus 131 ~~G-~a~~----~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~ 170 (257)
+.. .++. +++..|- -...+.|...|-...|++.+.+
T Consensus 83 ~~~~~a~~~~v~v~v~a~D----rpgIv~~~T~lf~~~~inie~L 123 (176)
T COG2716 83 AHPTPANPAPVWVYVDAND----RPGIVEEFTALFDGHGINIENL 123 (176)
T ss_pred CCccCCCCceEEEEEEecC----CccHHHHHHHHHHhcCCchhhc
Confidence 211 1111 1111121 1123566677888899987654
No 253
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=61.82 E-value=13 Score=34.09 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=51.9
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE-EEecCCCChH
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF-LEAPVSGSKK 94 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~-vdapV~g~~~ 94 (257)
.+.+.+++++.|+||.|+|-.... .++ +. .+..|.-+||.|-..+.. +++.+.+++.|... +++.+.-|..
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~-~i~---ka---~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDL-TIL---KA---CIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhH-HHH---HH---HHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 356678889999999999987665 333 22 234678888888888877 88888888888754 5666655544
Q ss_pred Hh
Q 025140 95 PA 96 (257)
Q Consensus 95 ~a 96 (257)
.+
T Consensus 131 nv 132 (389)
T COG1748 131 NV 132 (389)
T ss_pred HH
Confidence 43
No 254
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.66 E-value=7.9 Score=33.78 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=33.6
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...|+++ ..++.+.+++||+||.+++-+.-+.. . .+++|.+|||.+...
T Consensus 172 L~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~lv~~------~---~vk~GavVIDVgi~~ 227 (279)
T PRK14178 172 LLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITP------D---MVKPGATVIDVGINQ 227 (279)
T ss_pred HHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccccCH------H---HcCCCcEEEEeeccc
Confidence 44456653 25678899999999999976532221 1 247889999987543
No 255
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.75 E-value=11 Score=33.20 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=31.5
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
.++.+.+++||+||+++.-+.-+.. +...+|.++||.++..
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp~~i~~---------~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVPELIDG---------SMLSEGATVIDVGINR 236 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH---------HHcCCCCEEEEccccc
Confidence 6688899999999999988763322 2356899999988654
No 256
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.06 E-value=9.8 Score=33.49 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=29.5
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
.++.+.+++||+||.+++.+.-+.. +.+.+|.++||.+...
T Consensus 198 ~~l~~~~~~ADIvI~Avg~~~li~~---------~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 198 KDIPSYTRQADILIAAIGKARFITA---------DMVKPGAVVIDVGINR 238 (295)
T ss_pred hhHHHHHHhCCEEEEecCccCccCH---------HHcCCCCEEEEeeccc
Confidence 4678899999999999976632211 1247899999987543
No 257
>PRK08374 homoserine dehydrogenase; Provisional
Probab=60.06 E-value=35 Score=30.55 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=64.5
Q ss_pred CHHHHH--hcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCH-HHHHHHHHHHHHcCCcEE-EecCCCCh
Q 025140 18 SPDEVA--ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL-EAPVSGSK 93 (257)
Q Consensus 18 s~~ea~--~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p-~~~~~la~~~~~~G~~~v-dapV~g~~ 93 (257)
++.|.+ .++|+||=+.+ ++...+++ . ..+..|+-+|-.++... ...+++.+..+++|..++ ++.|.+|.
T Consensus 82 ~~~ell~~~~~DVvVd~t~-~~~a~~~~---~---~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~Gi 154 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTN-DKNAHEWH---L---EALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGT 154 (336)
T ss_pred CHHHHHhcCCCCEEEECCC-cHHHHHHH---H---HHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccC
Confidence 566665 36777776654 44444444 1 23446666666665322 233455555556676653 44465554
Q ss_pred HHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC
Q 025140 94 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS--MMATFSEGLLHSEKVGL 165 (257)
Q Consensus 94 ~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~--~~~~~~Ea~~la~~~Gl 165 (257)
| +++.++..+ .+.++..+-++=+|+. |+++.- .-..+.|++.-|++.|.
T Consensus 155 P----------------ii~~l~~~l--~g~~i~~i~GIlnGT~-----nyIl~~m~~g~~f~eal~eAq~~Gy 205 (336)
T PRK08374 155 P----------------IIGLLRENL--LGDTVKRIEAVVNATT-----TFILTRMEQGKTFEEALKEAQTLGI 205 (336)
T ss_pred C----------------chHHHHhhc--cccceEEEEEEEechH-----HHHHHHhhCCCCHHHHHHHHHHcCC
Confidence 3 345566655 4566777644333332 332221 23458888888988776
No 258
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.62 E-value=9.1 Score=33.54 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=30.3
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
.++.+.+++||+||.++..+.-+..- .+.+|.++||.+...
T Consensus 196 ~~l~~~~~~ADIVI~AvG~p~li~~~---------~vk~GavVIDVGi~~ 236 (286)
T PRK14184 196 PDLAEECREADFLFVAIGRPRFVTAD---------MVKPGAVVVDVGINR 236 (286)
T ss_pred hhHHHHHHhCCEEEEecCCCCcCCHH---------HcCCCCEEEEeeeec
Confidence 45888999999999999776643322 246889999987543
No 259
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=59.40 E-value=72 Score=23.79 Aligned_cols=84 Identities=10% Similarity=0.016 Sum_probs=49.8
Q ss_pred HhcCCEEEEecCCh-------HHHHHHhcCCCcccccCCCCCEEEEcCCCC-----HHHHHHHHHHHHHcCCcEEEecCC
Q 025140 23 AASCDVTFAMLADP-------ESAMDVACGKHGAASGMGPGKGYVDVSTVD-----GDTSKLINGHIKATGASFLEAPVS 90 (257)
Q Consensus 23 ~~~advvi~~l~~~-------~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~-----p~~~~~la~~~~~~G~~~vdapV~ 90 (257)
+.++|.||++.|+. ..++..+ +.+.+...+|+.++-.+|.. -...+.+.+.++++|...+..|+.
T Consensus 43 l~~~d~iilgspty~~g~~p~~~~~~f~---~~l~~~~~~gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~~~v~~~~~ 119 (140)
T TIGR01753 43 LLSYDAVLLGCSTWGDEDLEQDDFEPFF---EELEDIDLGGKKVALFGSGDWGYEFCEAVDDWEERLKEAGATIIAEGLK 119 (140)
T ss_pred HhcCCEEEEEcCCCCCCCCCcchHHHHH---HHhhhCCCCCCEEEEEecCCCCchhhHHHHHHHHHHHHCCCEEecCCee
Confidence 45699999998883 2334444 22222223565544444422 256778889998899988766542
Q ss_pred CChHHhhcCceEEEec-CChhHHHHHHHHHHHh
Q 025140 91 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIM 122 (257)
Q Consensus 91 g~~~~a~~g~l~i~~g-g~~~~~~~~~~ll~~~ 122 (257)
+-+ -+++..++++++.+.+
T Consensus 120 -------------~~~~p~~~~~~~~~~~~~~l 139 (140)
T TIGR01753 120 -------------VDGDPEEEDLDKCREFAKDL 139 (140)
T ss_pred -------------eecCCCHHHHHHHHHHHHHh
Confidence 222 3446667777776554
No 260
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.32 E-value=8.8 Score=33.62 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=35.2
Q ss_pred hhhcCccc------cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 8 FYYSRCRY------QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 8 ~~~~Ga~~------~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
|...||++ ..++.+.+++||+||+++..+.-+.. +.+.+|.++||.++..
T Consensus 177 L~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~---------~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 177 MLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKA---------SMVKKGAVVVDIGINR 232 (285)
T ss_pred HHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCCH---------HHcCCCcEEEEeeccc
Confidence 45567753 24467889999999999988764332 1247899999988654
No 261
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=58.87 E-value=81 Score=26.03 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=41.8
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCCcE--EEecCCCC---hHHhhcCceEEEec
Q 025140 55 PGKGYVDVSTVDGDTSKLINGHIKATGASF--LEAPVSGS---KKPAEDGQLIFLAA 106 (257)
Q Consensus 55 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~--vdapV~g~---~~~a~~g~l~i~~g 106 (257)
.+.-+|-.+|..++..+.+.+.++++|+-+ +|.|-.+. |.....|.+.+-++
T Consensus 68 ~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iais 124 (205)
T TIGR01470 68 EGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAIS 124 (205)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEE
Confidence 577888899999999999999999999876 77776433 66677888887775
No 262
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=58.76 E-value=12 Score=33.93 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=8.7
Q ss_pred HHHHHhcCCEEEEecCCh
Q 025140 19 PDEVAASCDVTFAMLADP 36 (257)
Q Consensus 19 ~~ea~~~advvi~~l~~~ 36 (257)
+.++++++|+||.|++..
T Consensus 61 l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 61 LAELLRGCDVVINCAGPF 78 (386)
T ss_dssp HHHHHTTSSEEEE-SSGG
T ss_pred HHHHHhcCCEEEECCccc
Confidence 344555555555555443
No 263
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=56.98 E-value=20 Score=31.57 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=46.7
Q ss_pred chhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 5 NNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
.+.|.+.|.+..+++.++-.++-+||-.=.-+.++++-+ ..+|-.|||.|--.+...++..+.+.+.|-.
T Consensus 46 v~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~---------~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~ 115 (298)
T PRK01045 46 VERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEA---------KERGLTVIDATCPLVTKVHKEVARMSREGYE 115 (298)
T ss_pred HHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHH---------HHCCCeEEeCCCccchHHHHHHHHHHhCCCE
Confidence 456777888888777776555556655555555555443 1356677888877777777777777777654
No 264
>PRK06756 flavodoxin; Provisional
Probab=55.18 E-value=52 Score=25.26 Aligned_cols=87 Identities=10% Similarity=0.015 Sum_probs=51.9
Q ss_pred HHHhcCCEEEEecCCh------HHHHHHhcCCCcccccCCCCCEEEEcCCCC------HHHHHHHHHHHHHcCCcEEEec
Q 025140 21 EVAASCDVTFAMLADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVD------GDTSKLINGHIKATGASFLEAP 88 (257)
Q Consensus 21 ea~~~advvi~~l~~~------~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~------p~~~~~la~~~~~~G~~~vdap 88 (257)
+-+.++|.|+++.|+. ..+...+ +.+...-.+|+.+.-.+|.. ....+.+.+.+.+.|...+..|
T Consensus 45 ~~~~~~d~vi~gspt~~~g~~p~~~~~fl---~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~ 121 (148)
T PRK06756 45 SILEQYDGIILGAYTWGDGDLPDDFLDFY---DAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEG 121 (148)
T ss_pred HHHhcCCeEEEEeCCCCCCCCcHHHHHHH---HHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCC
Confidence 4456899999998874 2355555 22222123566555554422 3677889999999999887654
Q ss_pred CCCChHHhhcCceEEEecCChhHHHHHHHHHHHh
Q 025140 89 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM 122 (257)
Q Consensus 89 V~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~ 122 (257)
+.- -..-+++.+++++.+-+.+
T Consensus 122 ~~~------------~~~p~~~d~~~~~~~~~~~ 143 (148)
T PRK06756 122 LKV------------ELTPEDEDVEKCLQFGAEF 143 (148)
T ss_pred eEE------------ecCCCHHHHHHHHHHHHHH
Confidence 321 1122445666666665554
No 265
>PHA02518 ParA-like protein; Provisional
Probab=55.01 E-value=96 Score=24.92 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHHHhcCCEEEEecCC-hHHHH---HH---hcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 025140 19 PDEVAASCDVTFAMLAD-PESAM---DV---ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 91 (257)
Q Consensus 19 ~~ea~~~advvi~~l~~-~~~v~---~v---~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g 91 (257)
..+++..||.||+++.. ..+++ .+ +............-.+++++..-.....+++.+.+++.|..++...+..
T Consensus 92 ~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 171 (211)
T PHA02518 92 ARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQLYREARKALAGYGLPILRNGTTQ 171 (211)
T ss_pred HHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCcchHHHHHHHHHHHcCchhhhchhhh
Confidence 34567788888776543 22222 11 1100011112222234444432222344566666765555544443333
Q ss_pred ChHH---hhcCceEEEecCChhHHHHHHHHHH
Q 025140 92 SKKP---AEDGQLIFLAAGDKSLYNTVAPLLD 120 (257)
Q Consensus 92 ~~~~---a~~g~l~i~~gg~~~~~~~~~~ll~ 120 (257)
.... ...|....-+..+..+.+.++.+..
T Consensus 172 ~~~~~~a~~~g~~v~~~~~~~~a~~~~~~l~~ 203 (211)
T PHA02518 172 RVAYADAAEAGGSVLELPEDDKAAEEIIQLVK 203 (211)
T ss_pred HHHHHHHHhcCCceEecCCCchHHHHHHHHHH
Confidence 2221 2334433333333344445544443
No 266
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=54.72 E-value=42 Score=30.25 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=48.3
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-HH----hhcCceEEEecCChhHHHHHHHHHHHhcCCce
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-KP----AEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 127 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-~~----a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~ 127 (257)
-++.||... -+++++.++.+.+++.+..|++-|+.-.- .. ......++..+-.-..+..++.+++.-+-+++
T Consensus 188 ~~l~~DaN~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~ 265 (368)
T TIGR02534 188 ASVRVDVNAAWDERTALHYLPQLADAGVELIEQPTPAENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVF 265 (368)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcChhheECCCCcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEE
Confidence 368899964 78899999999999999999999996431 11 12333455554443445566777766544443
No 267
>PRK09389 (R)-citramalate synthase; Provisional
Probab=54.58 E-value=1.6e+02 Score=27.88 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEe--cCCCChH-----Hh-h---cCceEEEecCChhHHHHHHHHHHHhcCCceecCCC
Q 025140 64 TVDGDTSKLINGHIKATGASFLEA--PVSGSKK-----PA-E---DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV 132 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vda--pV~g~~~-----~a-~---~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~ 132 (257)
..++++..++++.+.+.|++++++ |+++... .. . ..++..++-..... ++..++ .+.+.+++--.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~~~d---i~~a~~-~g~~~v~i~~~ 95 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAVKVD---IDAALE-CDVDSVHLVVP 95 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccCHHH---HHHHHh-CCcCEEEEEEc
Confidence 567899999999999999999999 4443211 11 1 12223333333333 333333 34445555333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 133 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 133 G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
-+-..++...|.-..-.+..+.|+..++++.|+
T Consensus 96 ~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~ 128 (488)
T PRK09389 96 TSDLHIEYKLKKTREEVLETAVEAVEYAKDHGL 128 (488)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 333344444444445556777888899998886
No 268
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=54.42 E-value=20 Score=33.85 Aligned_cols=65 Identities=9% Similarity=-0.065 Sum_probs=40.7
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEE
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 86 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vd 86 (257)
.+.++|+.|+++++|+||++...++ .++. .-+.+...+.+.++|+|.-.+-.. +.+++.|..|+-
T Consensus 400 ~~~~~~~~~a~~~aD~vvi~t~~~e-f~~l--~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~ 464 (473)
T PLN02353 400 VSVVWDAYEATKGAHGICILTEWDE-FKTL--DYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYS 464 (473)
T ss_pred eeeeCCHHHHhcCCCEEEECCCChH-hccc--CHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEE
Confidence 4678888899999999999988754 2221 002223334444589998776532 223345887754
No 269
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.41 E-value=40 Score=30.25 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=45.5
Q ss_pred ccccCC-CCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-HH----hhcCceEEEecCChhHHHHHHHHHH
Q 025140 49 AASGMG-PGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-KP----AEDGQLIFLAAGDKSLYNTVAPLLD 120 (257)
Q Consensus 49 ~~~~l~-~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-~~----a~~g~l~i~~gg~~~~~~~~~~ll~ 120 (257)
+.+.+. .-.+.||.+. -++++++++.+.+++.|+.|++-|+.-.- .. ......+|..+-..-....++++++
T Consensus 169 vr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~ 247 (352)
T cd03325 169 LREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLLFIEEPVLPENVEALAEIAARTTIPIATGERLFSRWDFKELLE 247 (352)
T ss_pred HHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHH
Confidence 334443 3468999975 77899999999999999999999995431 11 1222334444322234455666654
No 270
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=54.24 E-value=1.6e+02 Score=26.31 Aligned_cols=127 Identities=13% Similarity=0.152 Sum_probs=67.1
Q ss_pred hHHHHHHhcCCCcccccCCCCCEEEEc--CCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEE---------
Q 025140 36 PESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL--------- 104 (257)
Q Consensus 36 ~~~v~~v~~~~~~~~~~l~~g~~ivd~--ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~--------- 104 (257)
|.++.+.+ ..+.+.+.+...|=-+ .+..-..+-.++ +-+.|++++|+.+.|--.++.+-.+-.+
T Consensus 171 P~~v~~~v---~~l~~~l~~~i~ig~H~HnnlGla~ANsla--Ai~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~ 245 (333)
T TIGR03217 171 PDDVRDRV---RALKAVLKPETQVGFHAHHNLSLAVANSIA--AIEAGATRIDASLRGLGAGAGNAPLEVFVAVLDRLGW 245 (333)
T ss_pred HHHHHHHH---HHHHHhCCCCceEEEEeCCCCchHHHHHHH--HHHhCCCEEEeecccccccccCccHHHHHHHHHhcCC
Confidence 55666555 2333333333222223 344444444343 3357999999999877665544332111
Q ss_pred -ecCCh-hHHHHHHHHHHHhcCCceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025140 105 -AAGDK-SLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ 176 (257)
Q Consensus 105 -~gg~~-~~~~~~~~ll~~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~ 176 (257)
.|-|- ...+.++.++.++-.+...+.. .-.|. .+..-....-+-.+++++|+|+..++--+.+
T Consensus 246 ~tgidl~~l~~~a~~~v~p~~~~~~~~~~~~~~~Gy---------ag~~s~~~~~~~~~~~~~~~~~~~i~~~~~~ 312 (333)
T TIGR03217 246 NTGCDLFKLMDAAEDIVRPLMDRPVRVDRETLTLGY---------AGVYSSFLLHAERAAAKYGVDARDILVELGR 312 (333)
T ss_pred CCCcCHHHHHHHHHHHHHhhccCCCcCChHHHHhhh---------hhhhhhHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 12222 3344456666666555433322 11111 2333445566678999999999887766655
No 271
>PF11115 DUF2623: Protein of unknown function (DUF2623); InterPro: IPR022574 This family is conserved in the Enterobacteriaceae family. Several members are named as YghW. The function is not known.
Probab=53.31 E-value=25 Score=25.11 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 025140 150 MATFSEGLLHSEKVGLDPNVLVEVVSQG 177 (257)
Q Consensus 150 ~~~~~Ea~~la~~~Gld~~~~~~~l~~~ 177 (257)
..+..|+-.|++++|++.+.+.+....+
T Consensus 51 ~~aA~eAG~L~RrYgL~rd~v~~FF~~~ 78 (95)
T PF11115_consen 51 QLAAWEAGELTRRYGLDRDMVADFFTEG 78 (95)
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHHhcC
Confidence 3567899999999999999999999875
No 272
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=53.27 E-value=12 Score=32.62 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=57.7
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 92 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~ 92 (257)
...+.+..+++..+|+|+.|.++-+- .++|+ -+.+| +.||+=-..--..++.-..+-+.++-|||.- -
T Consensus 195 ~~~~qsl~~aV~~sDIIs~atlsteP---ilfge-----wlkpg-thIdlVGsf~p~mhEcDdelIq~a~vfVDsr---e 262 (333)
T KOG3007|consen 195 LNQYQSLNGAVSNSDIISGATLSTEP---ILFGE-----WLKPG-THIDLVGSFKPVMHECDDELIQSACVFVDSR---E 262 (333)
T ss_pred EEehhhhhcccccCceEEeccccCCc---eeeee-----eecCC-ceEeeeccCCchHHHHhHHHhhhheEEEecc---h
Confidence 34678999999999999999987543 34432 34455 6677755444455788888878889999952 1
Q ss_pred hHHhhcCceE-EEecCChhHHHH
Q 025140 93 KKPAEDGQLI-FLAAGDKSLYNT 114 (257)
Q Consensus 93 ~~~a~~g~l~-i~~gg~~~~~~~ 114 (257)
-...+.|++. -+..|+.+++..
T Consensus 263 ~aL~EsGell~~~~~g~neI~a~ 285 (333)
T KOG3007|consen 263 HALLESGELLDSNIAGHNEIEAG 285 (333)
T ss_pred HHhhhhhhhccccccCHHHHHhH
Confidence 2233566654 233344554433
No 273
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=53.18 E-value=44 Score=30.89 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=37.1
Q ss_pred hcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCH
Q 025140 10 YSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG 67 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p 67 (257)
..|.+.. +..|+++.+|+||++..+...+..- .+..+++|.++++.+-...
T Consensus 236 ~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~------~~~~mK~GailiN~G~~~~ 286 (406)
T TIGR00936 236 MDGFRVM-TMEEAAKIGDIFITATGNKDVIRGE------HFENMKDGAIVANIGHFDV 286 (406)
T ss_pred hcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHH------HHhcCCCCcEEEEECCCCc
Confidence 3566543 5688999999999998876665532 2356789999999987554
No 274
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=53.13 E-value=1.1e+02 Score=27.63 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=52.2
Q ss_pred EEecCChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------HHHHHH
Q 025140 103 FLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD---------PNVLVE 172 (257)
Q Consensus 103 i~~gg~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld---------~~~~~~ 172 (257)
.+++|+-...+.++.|++ -|...+.+|- +|+-...+.+..+ -..++.++.|+...+++.|++ .-.+.+
T Consensus 153 ~vIaGNV~T~e~a~~Li~-aGAD~vKVGIGpGSiCtTr~vtGv-G~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~K 230 (346)
T PRK05096 153 TICAGNVVTGEMVEELIL-SGADIVKVGIGPGSVCTTRVKTGV-GYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAK 230 (346)
T ss_pred cEEEecccCHHHHHHHHH-cCCCEEEEcccCCccccCcccccc-ChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHH
Confidence 355666666667777766 4666778876 8887777776654 356889999999999998764 245677
Q ss_pred HHhhc
Q 025140 173 VVSQG 177 (257)
Q Consensus 173 ~l~~~ 177 (257)
.|..+
T Consensus 231 AlaaG 235 (346)
T PRK05096 231 AFGGG 235 (346)
T ss_pred HHHcC
Confidence 77654
No 275
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=52.82 E-value=94 Score=24.69 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=56.0
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHH-HHHHHHHhcCC-ceec--C
Q 025140 55 PGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNT-VAPLLDIMGKS-RFYL--G 130 (257)
Q Consensus 55 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~-~~~ll~~~~~~-~~~~--G 130 (257)
.=++||+++.-.|.. +..+.+++.|++++.-++...... ...-+++...+ ++-+++.-.-. .+|+ |
T Consensus 32 ~LKTII~L~~e~~~~--~~~~f~~~~~I~l~~~~~~~~~~~--------~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G 101 (164)
T PF03162_consen 32 GLKTIINLRPEPPSQ--DFLEFAEENGIKLIHIPMSSSKDP--------WVPISEEQVAEALEIILDPRNYPVLIHCNHG 101 (164)
T ss_dssp T-SEEEE--SS---H--HHHHHHHHTT-EEEE-------GG--------G----HHHHHHHHHHHH-GGG-SEEEE-SSS
T ss_pred CCceEEEecCCCCCH--HHHHHHhhcCceEEEeccccccCc--------cccCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 347999999876643 444488999999999998766543 11223333333 33344433222 3566 5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh
Q 025140 131 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVSQ 176 (257)
Q Consensus 131 ~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gld~~~~~~~l~~ 176 (257)
.--+|..+-+..-+..+...+.+.|.-.++.. .....+.+.|.+..
T Consensus 102 ~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~f~~~~~~~~~~~fIe~f~~ 148 (164)
T PF03162_consen 102 KDRTGLVVGCLRKLQGWSLSSIFDEYRRFAGPKIRYLDEQFIELFDV 148 (164)
T ss_dssp SSHHHHHHHHHHHHTTB-HHHHHHHHHHHHGGG--HHHHHHHHT---
T ss_pred CcchhhHHHHHHHHcCCCHHHHHHHHHHhcCCCCcHHHHHHHHhcCc
Confidence 66788887777766667788899999988877 44445566666554
No 276
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=52.70 E-value=77 Score=28.59 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=44.1
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCChH----H-hhcCceEEEecCChhH-HHHHHHHHHH
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSKK----P-AEDGQLIFLAAGDKSL-YNTVAPLLDI 121 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~~----~-a~~g~l~i~~gg~~~~-~~~~~~ll~~ 121 (257)
-.+.||.+. -+++++.++++.+++.+..|++-|+.-... . ...-..+++.|..-.. .+.++++++.
T Consensus 190 ~~l~vDan~~~~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~ 262 (368)
T cd03329 190 MRLMHDGAHWYSRADALRLGRALEELGFFWYEDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLA 262 (368)
T ss_pred CeEEEECCCCcCHHHHHHHHHHhhhcCCCeEeCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh
Confidence 368899964 789999999999999999999999964321 1 1122335544333233 5567777665
No 277
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=52.32 E-value=92 Score=28.05 Aligned_cols=75 Identities=8% Similarity=-0.015 Sum_probs=47.9
Q ss_pred CEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-----HHhhcCceEEEecCChhHHHHHHHHHHHhc-----CC
Q 025140 57 KGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-----KPAEDGQLIFLAAGDKSLYNTVAPLLDIMG-----KS 125 (257)
Q Consensus 57 ~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-----~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~-----~~ 125 (257)
.+.||... -+++++.++.+.+++.++.|++-|+.-.- .-......++..|-.-.....++++++.=. .+
T Consensus 165 ~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d 244 (361)
T cd03322 165 HLLHDVHHRLTPNQAARFGKDVEPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTT 244 (361)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecC
Confidence 68999975 78899999999999999999999995322 111222334443322233556677765422 23
Q ss_pred ceecCC
Q 025140 126 RFYLGD 131 (257)
Q Consensus 126 ~~~~G~ 131 (257)
+.++|+
T Consensus 245 ~~~~GG 250 (361)
T cd03322 245 VSHAGG 250 (361)
T ss_pred ccccCC
Confidence 445565
No 278
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.82 E-value=56 Score=23.86 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCC
Q 025140 68 DTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS 125 (257)
Q Consensus 68 ~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~ 125 (257)
..+.++.+.+.++|.+.-.-.-+|| ...+|..++|+|-+++..+.++.+++.-++.
T Consensus 11 ~da~~l~~~L~d~~fraTkLAsTGG--FlkaGNTTfliGved~~vd~~~s~Ike~C~~ 66 (109)
T COG3870 11 QDANELEDALTDKNFRATKLASTGG--FLKAGNTTFLIGVEDDRVDALRSLIKENCKS 66 (109)
T ss_pred ccHHHHHHHHHhCCceeEEeeccCc--eeecCCeEEEEecccchhHHHHHHHHHHhhh
Confidence 3567888899999888777776776 4567888999999998889999988766653
No 279
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=51.76 E-value=16 Score=31.99 Aligned_cols=70 Identities=9% Similarity=-0.028 Sum_probs=42.1
Q ss_pred CccccCCHHHHHhcCCEEEEecCC--hH-HHHHHhcCC-----CcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLAD--PE-SAMDVACGK-----HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~--~~-~v~~v~~~~-----~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
|...+.+..++++++|+||+++|- +. .++.++... +.+++.++++. ++-.....++.. +.++++|+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~-~~~~G~~~~~l~----~~a~~~gi~ 115 (287)
T TIGR02853 41 GAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKGHC-TIYVGISNPYLE----QLAADAGVK 115 (287)
T ss_pred cceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcCCCC-EEEEecCCHHHH----HHHHHCCCe
Confidence 556777888889999999999993 22 222222211 13445555433 344444555443 367789999
Q ss_pred EEE
Q 025140 84 FLE 86 (257)
Q Consensus 84 ~vd 86 (257)
++|
T Consensus 116 v~~ 118 (287)
T TIGR02853 116 LIE 118 (287)
T ss_pred EEE
Confidence 983
No 280
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=50.75 E-value=2.1e+02 Score=27.40 Aligned_cols=103 Identities=8% Similarity=0.077 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEe--cCCCChHHh--h--------cCceEEEecCChh----HHHHHHHHHHHhcCCce
Q 025140 64 TVDGDTSKLINGHIKATGASFLEA--PVSGSKKPA--E--------DGQLIFLAAGDKS----LYNTVAPLLDIMGKSRF 127 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vda--pV~g~~~~a--~--------~g~l~i~~gg~~~----~~~~~~~ll~~~~~~~~ 127 (257)
..+++...++++.+.+.|++++++ |.++..... + ..++..++-..++ ..++.-+.+...+...+
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v 98 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVV 98 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEE
Confidence 567899999999999999999998 444322110 1 1233333322222 11222223333455555
Q ss_pred ecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 025140 128 YLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD 166 (257)
Q Consensus 128 ~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld 166 (257)
++-...+-.-++...|.-.--.+..+.++..+++..|..
T Consensus 99 ~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~ 137 (526)
T TIGR00977 99 TIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDE 137 (526)
T ss_pred EEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 553333444444444444456667778888888888765
No 281
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=50.44 E-value=30 Score=25.73 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCC
Q 025140 67 GDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS 125 (257)
Q Consensus 67 p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~ 125 (257)
-+.+..+.+.+.++|.+.---+=+|| ..+.|..++|+|-+++-.+++-.+++.-+++
T Consensus 10 d~Da~~l~~~L~~~g~~~TkLsstGG--FLr~GNtTlliGvede~v~~vl~iIk~~c~~ 66 (109)
T PF06153_consen 10 DEDADDLSDALNENGFRVTKLSSTGG--FLREGNTTLLIGVEDEKVDEVLEIIKENCKK 66 (109)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEEEET--TTTEEEEEEEEEEEGGGHHHHHHHHHHHH--
T ss_pred HhhHHHHHHHHHHCCceEEEEecccc--eeccCCEEEEEEecHHHHHHHHHHHHHhhcC
Confidence 45677888999999887655444444 5678888999999999999999999887764
No 282
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=50.21 E-value=64 Score=29.28 Aligned_cols=69 Identities=7% Similarity=0.199 Sum_probs=43.5
Q ss_pred chhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 5 NNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
.+++.+.||++.++.+|+.+ ||+|+- |..+... +. ..+.+|++++-+.--. ..+.+.+.+.++++..
T Consensus 47 D~~Y~~aGa~i~~~~~~~~~-~dii~~-Vk~p~~~-~~--------~~~~~g~~l~~~~~~a--~~~~~~~~l~~~~~t~ 113 (370)
T TIGR00518 47 DAAYKAAGAELVATAKQVWD-AELVLK-VKEPLPE-EY--------GYLRHGQILFTYLHLA--AERALTDALLDSGTTA 113 (370)
T ss_pred hHHHHHCCCEEecCHHHHhc-CCEEEE-eCCCCHH-HH--------hhcCCCcEEEEEeccC--CCHHHHHHHHHcCCeE
Confidence 46788999999999999995 999863 4333221 11 2345677766654332 3345666666777765
Q ss_pred EE
Q 025140 85 LE 86 (257)
Q Consensus 85 vd 86 (257)
++
T Consensus 114 i~ 115 (370)
T TIGR00518 114 IA 115 (370)
T ss_pred EE
Confidence 54
No 283
>PRK14017 galactonate dehydratase; Provisional
Probab=50.08 E-value=51 Score=29.97 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=43.9
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-----HHhhcCceEEEecCChhHHHHHHHHHHH
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-----KPAEDGQLIFLAAGDKSLYNTVAPLLDI 121 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-----~~a~~g~l~i~~gg~~~~~~~~~~ll~~ 121 (257)
-.+.||... -+++++.++.+.+++.|+.|++-|+.-.- .-......+|..+-..-.+..++++++.
T Consensus 178 ~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~ 249 (382)
T PRK14017 178 IGIGVDFHGRVHKPMAKVLAKELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA 249 (382)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc
Confidence 368999976 67889999999999999999999995432 1112233344443333345566666653
No 284
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=50.08 E-value=13 Score=32.42 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=42.8
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcc-cccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~-~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
++..+.++++|+||.|.|-.-.-..- ..+ .+.+.++.+++|+.-.++.| .+.+.++++|++.+|.
T Consensus 184 ~~~~~~~~~aDiVInaTp~Gm~~~~~----~~~~~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~G 249 (284)
T PRK12549 184 SDLAAALAAADGLVHATPTGMAKHPG----LPLPAELLRPGLWVADIVYFPLET--ELLRAARALGCRTLDG 249 (284)
T ss_pred cchHhhhCCCCEEEECCcCCCCCCCC----CCCCHHHcCCCcEEEEeeeCCCCC--HHHHHHHHCCCeEecC
Confidence 45566778899999998753210000 001 12356788999999988776 6777888889876554
No 285
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=49.70 E-value=19 Score=32.17 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC
Q 025140 22 VAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 65 (257)
Q Consensus 22 a~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~ 65 (257)
..+++|+||+|+|...+-+ +. ..+ +..|.+|||+|.-
T Consensus 60 ~~~~vDvVf~A~g~g~s~~-~~---~~~---~~~G~~VIDlS~~ 96 (334)
T PRK14874 60 DFSGVDIALFSAGGSVSKK-YA---PKA---AAAGAVVIDNSSA 96 (334)
T ss_pred HHcCCCEEEECCChHHHHH-HH---HHH---HhCCCEEEECCch
Confidence 4478999999998865543 32 222 3467799999964
No 286
>PRK06703 flavodoxin; Provisional
Probab=49.60 E-value=86 Score=24.08 Aligned_cols=64 Identities=13% Similarity=0.012 Sum_probs=38.9
Q ss_pred HHhcCCEEEEecCCh------HHHHHHhcCCCcccccCCCCCEEEEcCCCC------HHHHHHHHHHHHHcCCcEEEec
Q 025140 22 VAASCDVTFAMLADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVD------GDTSKLINGHIKATGASFLEAP 88 (257)
Q Consensus 22 a~~~advvi~~l~~~------~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~------p~~~~~la~~~~~~G~~~vdap 88 (257)
-+.+.|.||++.|+. ..+...+ +.+.....+++.+.-.++.. ....+.+.+.+++.|+.++.-|
T Consensus 45 ~l~~~d~viigspt~~~g~~p~~~~~f~---~~l~~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 45 ELLAYDGIILGSYTWGDGDLPYEAEDFH---EDLENIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HHhcCCcEEEEECCCCCCcCcHHHHHHH---HHHhcCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccC
Confidence 466889999988864 3455555 22222123455444444322 3556679999999999876654
No 287
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=49.23 E-value=38 Score=29.64 Aligned_cols=71 Identities=10% Similarity=-0.040 Sum_probs=50.5
Q ss_pred chhhhhcCcccc--CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 5 NNAFYYSRCRYQ--PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 5 ~~~~~~~Ga~~~--~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
.+.|.+.|.++. +++.++-.++-+||-.=.-+..+++-+ ..+|-.+||.|--.+...+..++++.+.|-
T Consensus 47 v~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~~~---------~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy 117 (281)
T PRK12360 47 VSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYKDL---------KDKGLEIIDATCPFVKKIQNIVEEYYNKGY 117 (281)
T ss_pred HHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHHHH---------HHCCCeEEeCCCccchHHHHHHHHHHhCCC
Confidence 467888899888 888776555555555555556555444 135778889998888888888888888775
Q ss_pred cE
Q 025140 83 SF 84 (257)
Q Consensus 83 ~~ 84 (257)
..
T Consensus 118 ~i 119 (281)
T PRK12360 118 SI 119 (281)
T ss_pred EE
Confidence 43
No 288
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=48.81 E-value=1.1e+02 Score=26.22 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=64.0
Q ss_pred HHHHHHcCCcEEEecCCCChHHhhc----C--ceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHH---
Q 025140 74 NGHIKATGASFLEAPVSGSKKPAED----G--QLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM--- 144 (257)
Q Consensus 74 a~~~~~~G~~~vdapV~g~~~~a~~----g--~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~--- 144 (257)
++.++..|++|+|-.-.-+|..-.. . +.+++ .|.+..-+.++.+.+.-+. +.-=|+.|+|.....+..+
T Consensus 92 A~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFV-cGarnLgEAlRRI~EGAaM-IRTKGEaGTGnv~eAVrHmr~i 169 (296)
T COG0214 92 AQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFV-CGARNLGEALRRISEGAAM-IRTKGEAGTGNVVEAVRHMRKI 169 (296)
T ss_pred HHHHHHhCCCccccccccCCCchhhhcchhhccccee-cCcCcHHHHHHHHhhhHHH-HhcCCCCCCCcHHHHHHHHHHH
Confidence 4566778999999887777664422 1 22444 4555455666666654443 3334888888776555433
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 025140 145 ---IMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 177 (257)
Q Consensus 145 ---~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~ 177 (257)
+....-..--|.+..|+.++.+-+.+.++...+
T Consensus 170 ~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~g 205 (296)
T COG0214 170 NGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLG 205 (296)
T ss_pred HHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhC
Confidence 222222233567778999999998888887765
No 289
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=48.66 E-value=10 Score=32.88 Aligned_cols=65 Identities=20% Similarity=0.015 Sum_probs=39.7
Q ss_pred HHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 19 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 19 ~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
..+.+.++|+||.|.|....-..- ...-..+.+.++.+++|+.-.+..| .+-+.++++|+..+|.
T Consensus 179 ~~~~~~~~DivInaTp~g~~~~~~--~~~~~~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~G 243 (278)
T PRK00258 179 LQEELADFDLIINATSAGMSGELP--LPPLPLSLLRPGTIVYDMIYGPLPT--PFLAWAKAQGARTIDG 243 (278)
T ss_pred chhccccCCEEEECCcCCCCCCCC--CCCCCHHHcCCCCEEEEeecCCCCC--HHHHHHHHCcCeecCC
Confidence 346677899999998865321000 0000113356788999998866554 5667778888765543
No 290
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=48.44 E-value=13 Score=34.92 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=36.0
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
.|++. .+..++++.+|+||++..+...+. ...++.+++|.++||.+-..
T Consensus 296 ~G~~~-~~leell~~ADIVI~atGt~~iI~------~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 296 EGYQV-VTLEDVVETADIFVTATGNKDIIT------LEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred cCcee-ccHHHHHhcCCEEEECCCcccccC------HHHHhccCCCcEEEEcCCCc
Confidence 46653 468899999999999976544332 13446688999999998875
No 291
>PRK14847 hypothetical protein; Provisional
Probab=48.44 E-value=2.1e+02 Score=25.78 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEe--cCCCChHHh------hcC------ceEEEecCChhHHHHHHHHHHHhcCCceec
Q 025140 64 TVDGDTSKLINGHIKATGASFLEA--PVSGSKKPA------EDG------QLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 129 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vda--pV~g~~~~a------~~g------~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~ 129 (257)
.-++++..+|++.+.+.|++.+++ |.++..... ..+ .+..+.=...+.+++.-+........++|+
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi 129 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPRAIVHL 129 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCEEEE
Confidence 567899999999999999999988 445433321 222 233444455555555544444444456777
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 130 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 130 G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
.-+.+-..+|...|.-..-.+..+.|+..+|+..|.
T Consensus 130 ~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~ 165 (333)
T PRK14847 130 YNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALAD 165 (333)
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc
Confidence 656666666666665556667788899999999954
No 292
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=48.34 E-value=1e+02 Score=25.05 Aligned_cols=102 Identities=10% Similarity=-0.107 Sum_probs=54.0
Q ss_pred CCHHHHHhcCCEEEEecCCh-----HHHHHHhcCCCcccccCCCCCEEEE-cCCCCHHHHHHHH----HHHHHcCCcEEE
Q 025140 17 PSPDEVAASCDVTFAMLADP-----ESAMDVACGKHGAASGMGPGKGYVD-VSTVDGDTSKLIN----GHIKATGASFLE 86 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~-----~~v~~v~~~~~~~~~~l~~g~~ivd-~ST~~p~~~~~la----~~~~~~G~~~vd 86 (257)
....+.+++||.||+..|-. ..++..+ +-+......|+.+.- .+..++...+.+. ..+...|+..+.
T Consensus 58 ~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~i---D~l~~~~l~~K~v~iiat~G~~~~~~~~~~~lr~~l~~l~a~~~~ 134 (191)
T PRK10569 58 KTFTEQLAQADGLIVATPVYKASFSGALKTLL---DLLPERALEHKVVLPLATGGSVAHMLAVDYALKPVLSALKAQEIL 134 (191)
T ss_pred HHHHHHHHHCCEEEEECCccCCCCCHHHHHHH---HhCChhhhCCCEEEEEEecCCchhHHHHHHHHHHHHHHcCCeecC
Confidence 34556778899999999874 3455555 212122345554433 3336666665554 344445555444
Q ss_pred ecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhc
Q 025140 87 APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG 123 (257)
Q Consensus 87 apV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~ 123 (257)
-+++-.......-.-.-.+ +++..++++.+++.+-
T Consensus 135 ~~~~~~~~~~~~~d~~~~~--d~~~~~rl~~~~~~~~ 169 (191)
T PRK10569 135 HGVFADDSQVIDYHHQPQF--TPNLQTRLDEALETFW 169 (191)
T ss_pred ceEEEechhhhcccccccc--CHHHHHHHHHHHHHHH
Confidence 4444333332100000011 7777788887777664
No 293
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=48.25 E-value=51 Score=24.15 Aligned_cols=33 Identities=3% Similarity=0.031 Sum_probs=28.2
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 55 PGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 55 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
+.+.||-.+..++++.+++...++..++.++..
T Consensus 33 k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~ 65 (104)
T PRK05583 33 KVYLIIISNDISENSKNKFKNYCNKYNIPYIEG 65 (104)
T ss_pred CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe
Confidence 457899999999999999999998888877655
No 294
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=48.04 E-value=63 Score=29.06 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=43.8
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-H----HhhcCceEEEecCChhHHHHHHHHHHH
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-K----PAEDGQLIFLAAGDKSLYNTVAPLLDI 121 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-~----~a~~g~l~i~~gg~~~~~~~~~~ll~~ 121 (257)
-.+.||... -+++++.++.+.+++.+..|++-|+.-.. . -......+|..+-.-.....++++++.
T Consensus 189 ~~l~iDaN~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~ 260 (365)
T cd03318 189 ASVRVDVNQAWDESTAIRALPRLEAAGVELIEQPVPRENLDGLARLRSRNRVPIMADESVSGPADAFELARR 260 (365)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcCcceeeCCCCcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh
Confidence 468999964 78899999999999999999999996431 1 112223344433222345566777655
No 295
>PRK06199 ornithine cyclodeaminase; Validated
Probab=47.83 E-value=13 Score=33.97 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=21.5
Q ss_pred ccccCCHHHHHhcCCEEEEecCChH
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPE 37 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~ 37 (257)
...++|+.|++++||+|++|.++.+
T Consensus 211 v~~~~s~~eav~~ADIVvtaT~s~~ 235 (379)
T PRK06199 211 VEVVDSIEEVVRGSDIVTYCNSGET 235 (379)
T ss_pred EEEeCCHHHHHcCCCEEEEccCCCC
Confidence 5568999999999999999997644
No 296
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=47.65 E-value=7.2 Score=31.17 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=32.6
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHH
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 69 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~ 69 (257)
.|-+. .+..|++..+|++|++..+...+.. .-++.+++|.++.+.+...-+.
T Consensus 65 dGf~v-~~~~~a~~~adi~vtaTG~~~vi~~------e~~~~mkdgail~n~Gh~d~Ei 116 (162)
T PF00670_consen 65 DGFEV-MTLEEALRDADIFVTATGNKDVITG------EHFRQMKDGAILANAGHFDVEI 116 (162)
T ss_dssp TT-EE-E-HHHHTTT-SEEEE-SSSSSSB-H------HHHHHS-TTEEEEESSSSTTSB
T ss_pred cCcEe-cCHHHHHhhCCEEEECCCCccccCH------HHHHHhcCCeEEeccCcCceeE
Confidence 45554 4788999999999998887543321 1234578999999988766554
No 297
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=46.94 E-value=2e+02 Score=25.16 Aligned_cols=101 Identities=9% Similarity=0.037 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEe--cCCCChHHh------hcC------ceEEEecCChhHHHHHHHHHHHhcC-Ccee
Q 025140 64 TVDGDTSKLINGHIKATGASFLEA--PVSGSKKPA------EDG------QLIFLAAGDKSLYNTVAPLLDIMGK-SRFY 128 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vda--pV~g~~~~a------~~g------~l~i~~gg~~~~~~~~~~ll~~~~~-~~~~ 128 (257)
..++++..++++.+.+.|++.+++ |.++..... ..+ ++..++-..+..++++......... .+..
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~gfP~~~~~e~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~~~~~v~i 98 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVGFPSASQTDFDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGAKKAIVHL 98 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCCCCCEEEE
Confidence 567899999999999999999999 776655521 121 1223333444433433322211211 1333
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 129 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 129 ~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
+-+.-..+..|- .|.-..-.+..+.|+..+++..|+
T Consensus 99 ~~~~Sd~h~~~~-~~~s~~e~~~~~~~~v~~a~~~g~ 134 (284)
T cd07942 99 YNATSPLQRRVV-FGKSKEEIIEIAVDGAKLVKELAA 134 (284)
T ss_pred EEcCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhcc
Confidence 333333333332 233345556678888888888763
No 298
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=46.58 E-value=56 Score=24.86 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=31.9
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Q 025140 54 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 92 (257)
Q Consensus 54 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~ 92 (257)
.+..+||+++.. +...+.+.+.++++|+.|+++...|.
T Consensus 88 ~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g~ 125 (143)
T cd01483 88 DGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLGL 125 (143)
T ss_pred cCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 456788888877 66777899999999999999999873
No 299
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=46.37 E-value=30 Score=32.17 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=37.2
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHH
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD 68 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~ 68 (257)
.|... .+..++++.+|+||.+..+...+.. ..+..+++|.++++.+....+
T Consensus 254 ~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~------~~~~~mK~GailiNvG~~d~E 304 (425)
T PRK05476 254 DGFRV-MTMEEAAELGDIFVTATGNKDVITA------EHMEAMKDGAILANIGHFDNE 304 (425)
T ss_pred cCCEe-cCHHHHHhCCCEEEECCCCHHHHHH------HHHhcCCCCCEEEEcCCCCCc
Confidence 46653 4688999999999999887665542 234567899999999876543
No 300
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=46.27 E-value=41 Score=29.93 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=39.8
Q ss_pred cCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHH
Q 025140 98 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI 145 (257)
Q Consensus 98 ~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~ 145 (257)
...+++.+||+.++-...+.-|+.+|-.+.+.|+.-.....+=+.+.+
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~ 122 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFF 122 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHH
Confidence 456799999999999999999999999999998876666666555555
No 301
>PLN02494 adenosylhomocysteinase
Probab=45.93 E-value=26 Score=33.04 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=36.2
Q ss_pred hhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 9 YYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 9 ~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
...|.... +..|+++.+|+||++..+...+.. ..++.+++|.++++.+-..
T Consensus 294 ~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~------e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 294 LMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMV------DHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred HhcCCeec-cHHHHHhhCCEEEECCCCccchHH------HHHhcCCCCCEEEEcCCCC
Confidence 34566544 678999999999997776554321 2235688999999998743
No 302
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=44.79 E-value=67 Score=28.84 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=46.3
Q ss_pred ccCCC-CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-----HHhhc--CceEEEecCChhHHHHHHHHHHH
Q 025140 51 SGMGP-GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-----KPAED--GQLIFLAAGDKSLYNTVAPLLDI 121 (257)
Q Consensus 51 ~~l~~-g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-----~~a~~--g~l~i~~gg~~~~~~~~~~ll~~ 121 (257)
+.+.+ -.+.||... -+++++.++.+.+++.+..|++-|+...- .-.+. -..+|+.|-..-....++++++.
T Consensus 177 e~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~~EeP~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~ 256 (352)
T cd03328 177 RAIGPDAELFVDANGAYSRKQALALARAFADEGVTWFEEPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEA 256 (352)
T ss_pred HHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCcchhhCCCChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHc
Confidence 33433 368999975 67899999999999999999999995321 11122 22455544333345566677653
No 303
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=44.66 E-value=2.3e+02 Score=25.34 Aligned_cols=129 Identities=12% Similarity=0.147 Sum_probs=65.2
Q ss_pred hHHHHHHhcCCCcccccCCCCCEEEEc--CCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEE----------
Q 025140 36 PESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF---------- 103 (257)
Q Consensus 36 ~~~v~~v~~~~~~~~~~l~~g~~ivd~--ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i---------- 103 (257)
|.++.+.+ ..+.+.+.++..|=-+ .+..-..+-.++ +-+.|++++|+.+.|--.++.+-.+=.
T Consensus 172 P~~v~~~v---~~l~~~l~~~i~ig~H~HnnlGla~ANsla--Ai~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~ 246 (337)
T PRK08195 172 PEDVRDRV---RALRAALKPDTQVGFHGHNNLGLGVANSLA--AVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLDRMGW 246 (337)
T ss_pred HHHHHHHH---HHHHHhcCCCCeEEEEeCCCcchHHHHHHH--HHHhCCCEEEecChhhcccccCccHHHHHHHHHhcCC
Confidence 55565555 3333333233222222 344444444443 335799999999987655544332210
Q ss_pred EecCCh-hHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025140 104 LAAGDK-SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ 176 (257)
Q Consensus 104 ~~gg~~-~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~ 176 (257)
-.|-|- ...+..+.++.++-.+..++...+ ..+- + ....-....-+-.+++++|+|+..++--+.+
T Consensus 247 ~tgidl~~l~~~a~~~~~p~~~~~~~~~~~~--~~~g----~-ag~~s~~~~~~~~~~~~~~~~~~~i~~~~~~ 313 (337)
T PRK08195 247 ETGVDLYKLMDAAEDLVRPLMDRPVRVDREA--LTLG----Y-AGVYSSFLLHAERAAERYGVDARDILVELGR 313 (337)
T ss_pred CCCcCHHHHHHHHHHHHhhhccCCCCCCHHH--Hhhh----h-cccchhhHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 011222 334445556666655443332221 1111 1 2233344556668899999999887766665
No 304
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=44.49 E-value=45 Score=30.16 Aligned_cols=31 Identities=3% Similarity=0.025 Sum_probs=24.1
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEE
Q 025140 54 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 86 (257)
Q Consensus 54 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vd 86 (257)
....+||+++.-. ....+.+.+.+.|++|+|
T Consensus 66 ~~~dvVin~~gp~--~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 66 RGCDVVINCAGPF--FGEPVARACIEAGVHYVD 96 (386)
T ss_dssp TTSSEEEE-SSGG--GHHHHHHHHHHHT-EEEE
T ss_pred hcCCEEEECCccc--hhHHHHHHHHHhCCCeec
Confidence 4568999977544 778999999999999999
No 305
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=43.54 E-value=1.9e+02 Score=23.99 Aligned_cols=103 Identities=10% Similarity=0.108 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecCC-CChHHh----------hcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCc
Q 025140 65 VDGDTSKLINGHIKATGASFLEAPVS-GSKKPA----------EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVG 133 (257)
Q Consensus 65 ~~p~~~~~la~~~~~~G~~~vdapV~-g~~~~a----------~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G 133 (257)
.+++...++++.+.+.|+.+++.... .++... ...++..++-......++.-..+...+...+++-...
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~ 90 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRIFISV 90 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEecCcc
Confidence 57888999999999999999999832 333222 2345556666777777775555566777776665544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 025140 134 NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDP 167 (257)
Q Consensus 134 ~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~ 167 (257)
+-...+...|.-..-.+..+.++..++++.|.+.
T Consensus 91 s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 91 SDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp SHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 4444444444444556677788889999877654
No 306
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=43.16 E-value=19 Score=32.34 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=26.5
Q ss_pred CHHHHH-hcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC
Q 025140 18 SPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 64 (257)
Q Consensus 18 s~~ea~-~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST 64 (257)
++.+.. .++|++|+|+|+..+.+ +. ..+ ...|..|||+|.
T Consensus 58 ~~~~~~~~~~Dvvf~a~p~~~s~~-~~---~~~---~~~g~~VIDlS~ 98 (336)
T PRK08040 58 DAAEFDWSQAQLAFFVAGREASAA-YA---EEA---TNAGCLVIDSSG 98 (336)
T ss_pred eCchhhccCCCEEEECCCHHHHHH-HH---HHH---HHCCCEEEECCh
Confidence 444433 68999999999865433 33 222 246889999994
No 307
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=43.08 E-value=24 Score=31.64 Aligned_cols=37 Identities=19% Similarity=0.101 Sum_probs=25.8
Q ss_pred HHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC
Q 025140 21 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 64 (257)
Q Consensus 21 ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST 64 (257)
+.++++|+||.|++...+.+ .. ..+ +..|.+|||+|+
T Consensus 57 ~~~~~~D~v~~a~g~~~s~~-~a---~~~---~~~G~~VID~ss 93 (339)
T TIGR01296 57 ESFEGIDIALFSAGGSVSKE-FA---PKA---AKCGAIVIDNTS 93 (339)
T ss_pred HHhcCCCEEEECCCHHHHHH-HH---HHH---HHCCCEEEECCH
Confidence 45588999999999875544 32 122 245778999996
No 308
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=42.50 E-value=23 Score=31.51 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=30.5
Q ss_pred ccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCH
Q 025140 15 YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG 67 (257)
Q Consensus 15 ~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p 67 (257)
..+++.++++++|+||+|.|..+. ++.. +.+.+|..+...+.-.|
T Consensus 184 ~~~~~~~av~~aDiVvtaT~s~~p---~i~~-----~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 184 AATDPRAAMSGADIIVTTTPSETP---ILHA-----EWLEPGQHVTAMGSDAE 228 (326)
T ss_pred EeCCHHHHhccCCEEEEecCCCCc---EecH-----HHcCCCcEEEeeCCCCC
Confidence 368999999999999999988553 2210 23467777765554433
No 309
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=42.29 E-value=27 Score=31.29 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=25.5
Q ss_pred HhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 23 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 23 ~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
.+++|++|+|+|...+ .... ..+ ...|..+||+|.-.
T Consensus 64 ~~~vD~vFla~p~~~s-~~~v---~~~---~~~G~~VIDlS~~f 100 (336)
T PRK05671 64 FSQVQLAFFAAGAAVS-RSFA---EKA---RAAGCSVIDLSGAL 100 (336)
T ss_pred hcCCCEEEEcCCHHHH-HHHH---HHH---HHCCCeEEECchhh
Confidence 4789999999996433 3333 222 23688999999654
No 310
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=42.10 E-value=22 Score=34.29 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=34.4
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCH
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG 67 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p 67 (257)
..+++|-+.++|+||..+.-++-|+.-+ +.+|.++||+.....
T Consensus 196 T~~lae~v~~ADIvIvAiG~PefVKgdW---------iKpGavVIDvGINyv 238 (935)
T KOG4230|consen 196 TRNLAEKVSRADIVIVAIGQPEFVKGDW---------IKPGAVVIDVGINYV 238 (935)
T ss_pred CccHHHHhccCCEEEEEcCCcceeeccc---------ccCCcEEEEcccccc
Confidence 3678899999999999999888776443 468999999986543
No 311
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=42.04 E-value=2e+02 Score=23.88 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=41.0
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCC--cEEEecCCCC---hHHhhcCceEEEec
Q 025140 55 PGKGYVDVSTVDGDTSKLINGHIKATGA--SFLEAPVSGS---KKPAEDGQLIFLAA 106 (257)
Q Consensus 55 ~g~~ivd~ST~~p~~~~~la~~~~~~G~--~~vdapV~g~---~~~a~~g~l~i~~g 106 (257)
.+..+|-.+|..++..+++.+.+.++++ ..+|-|-.+. |.-...+.+.+-+|
T Consensus 71 ~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIs 127 (210)
T COG1648 71 DDAFLVIAATDDEELNERIAKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAIS 127 (210)
T ss_pred cCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCcccCceecceeeccCCeEEEEE
Confidence 4578899999999999999999999885 4478887544 55566777777775
No 312
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=42.00 E-value=55 Score=30.33 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=32.8
Q ss_pred hhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC
Q 025140 9 YYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 64 (257)
Q Consensus 9 ~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST 64 (257)
...|++.. +..++++.+|+||.|..+...+..- .+..+++|.++++.+.
T Consensus 242 ~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~------~l~~mk~GgilvnvG~ 290 (413)
T cd00401 242 AMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGE------HFEQMKDGAIVCNIGH 290 (413)
T ss_pred HhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHH------HHhcCCCCcEEEEeCC
Confidence 34566433 4567888889998888776655432 2345678888888874
No 313
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=41.59 E-value=1.2e+02 Score=26.95 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=44.6
Q ss_pred CCEEEEcC-CCCHHHHHHHHHHHHHcCCcEEEecCCCCh-HH----hhcCceEEEecCChhHHHHHHHHHH
Q 025140 56 GKGYVDVS-TVDGDTSKLINGHIKATGASFLEAPVSGSK-KP----AEDGQLIFLAAGDKSLYNTVAPLLD 120 (257)
Q Consensus 56 g~~ivd~S-T~~p~~~~~la~~~~~~G~~~vdapV~g~~-~~----a~~g~l~i~~gg~~~~~~~~~~ll~ 120 (257)
-.+.||.. .-+++++.++.+.+++.++.|++-|+.-.- .. ...-..+++++..-...+.++.+++
T Consensus 190 ~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~ 260 (357)
T cd03316 190 VDLMVDANGRWDLAEAIRLARALEEYDLFWFEEPVPPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLE 260 (357)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCccCCCeEcCCCCccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHH
Confidence 36889985 578899999999999899999999986431 11 1222346666555444566666665
No 314
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=41.47 E-value=32 Score=31.08 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC
Q 025140 21 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 65 (257)
Q Consensus 21 ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~ 65 (257)
+..+++|++|+|+|+..+ +++. ..+ ...|..|||.|..
T Consensus 64 ~~~~~~Divf~a~~~~~s-~~~~---~~~---~~~G~~VID~Ss~ 101 (347)
T PRK06728 64 NSFEGVDIAFFSAGGEVS-RQFV---NQA---VSSGAIVIDNTSE 101 (347)
T ss_pred HHhcCCCEEEECCChHHH-HHHH---HHH---HHCCCEEEECchh
Confidence 344789999999998644 3343 112 2468999999953
No 315
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=41.24 E-value=1.3e+02 Score=26.72 Aligned_cols=71 Identities=7% Similarity=-0.009 Sum_probs=45.8
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-----HHhhcCceEEEecCChhHHHHHHHHHHHhcCCc
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-----KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR 126 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-----~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~ 126 (257)
-.+.+|... -+++++.++.+.+++.+..|++-|+.-.- .-......+|..|-.--....++++++.=+-++
T Consensus 172 ~~l~vDan~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~ 248 (341)
T cd03327 172 VDLMLDCYMSWNLNYAIKMARALEKYELRWIEEPLIPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDI 248 (341)
T ss_pred CcEEEECCCCCCHHHHHHHHHHhhhcCCccccCCCCccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCE
Confidence 368999864 78899999999999999999999996432 111222334444333234456777776433333
No 316
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=40.23 E-value=19 Score=34.25 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=26.5
Q ss_pred HHHHHhcCCEEEEec-----CChHHHHHHhcCCCcccccCCCCCEEEEcCC
Q 025140 19 PDEVAASCDVTFAML-----ADPESAMDVACGKHGAASGMGPGKGYVDVST 64 (257)
Q Consensus 19 ~~ea~~~advvi~~l-----~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST 64 (257)
..|.++++|+||.++ +.|.-+. +..++.+++|.+|||.+.
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit------~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLIT------EEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeeh------HHHHhhCCCCCEEEEeee
Confidence 445678899999998 4432111 233456788888888874
No 317
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=40.20 E-value=87 Score=28.75 Aligned_cols=66 Identities=9% Similarity=0.027 Sum_probs=43.6
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-HH---h-hcCceEEEecCChhHHHHHHHHHHH
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-KP---A-EDGQLIFLAAGDKSLYNTVAPLLDI 121 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-~~---a-~~g~l~i~~gg~~~~~~~~~~ll~~ 121 (257)
-.+.||... -+++++.++.+.+++.++.|++-|+--.. .. . ..-..+|..|-.-.....++++++.
T Consensus 207 ~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~ 278 (404)
T PRK15072 207 LHLLHDVHHRLTPIEAARLGKSLEPYRLFWLEDPTPAENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE 278 (404)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc
Confidence 368999975 78999999999999999999999995322 11 1 2223344443322334556666654
No 318
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=40.13 E-value=1.8e+02 Score=24.95 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=91.7
Q ss_pred ccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChH
Q 025140 15 YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 94 (257)
Q Consensus 15 ~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~ 94 (257)
.+.++.|+++++=.|--|+|.+=.++.-++. .+..+...++|+-.||.+---+.--+....+..+ +|--||--. -
T Consensus 74 ~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~---qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~-lvaHPvNPP-y 148 (313)
T KOG2305|consen 74 GTTSLNELVKGAIHIQECVPEDLNLKKQLYK---QLDEIADPTTILASSTSTFMPSKFSAGLINKEQC-LVAHPVNPP-Y 148 (313)
T ss_pred CCccHHHHHhhhhhHHhhchHhhHHHHHHHH---HHHHhcCCceEEeccccccChHHHhhhhhhhhhe-eEecCCCCC-c
Confidence 4789999999988888899987666554431 1223345677777776554333333333433332 344444211 0
Q ss_pred HhhcCceEEEec---CChhHHHHHHHHHHHhcCCceecC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 025140 95 PAEDGQLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLG-DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL 170 (257)
Q Consensus 95 ~a~~g~l~i~~g---g~~~~~~~~~~ll~~~~~~~~~~G-~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~ 170 (257)
.. .|+=++= ...+..+|.+.+++.+|.+.+-.- +++ |- .+.-...+.++|--.+...-+++..++
T Consensus 149 fi---PLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~-Gf-------~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 149 FI---PLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREIL-GF-------ALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred cc---chheeccCCCCChhHHHHHHHHHHHhCCCCcccccccc-cc-------eeccccHHHHHHHHHHHHccCcchhhH
Confidence 11 0111121 345778999999999997655443 332 11 123445677899999999999999998
Q ss_pred HHHHhhcCCC
Q 025140 171 VEVVSQGAIS 180 (257)
Q Consensus 171 ~~~l~~~~~~ 180 (257)
-.+++.+.+.
T Consensus 218 D~VmS~GLG~ 227 (313)
T KOG2305|consen 218 DAVMSAGLGP 227 (313)
T ss_pred HHHHhcCCCc
Confidence 8888887543
No 319
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=39.98 E-value=47 Score=28.43 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=53.5
Q ss_pred cchhhhhcCccccCCHHHHHh-cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 4 PNNAFYYSRCRYQPSPDEVAA-SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 4 ~~~~~~~~Ga~~~~s~~ea~~-~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
..++..+..-.+--|-+|.++ ++|+.++.-. .++.-++....=..+.+.-..-+||+-|+-|=....+.+-+.+.|-
T Consensus 217 a~edvp~~dy~iplsqaevireg~ditlv~wg--tqvh~i~e~a~l~~ek~giscevidlkti~pwd~d~v~~sv~ktgr 294 (362)
T KOG0525|consen 217 AVEDVPEGDYMIPLSQAEVIREGSDITLVAWG--TQVHVIMEQACLAKEKLGISCEVIDLKTIIPWDKDTVEESVQKTGR 294 (362)
T ss_pred hhhhCCCCCccccccHHHHhhcCCceEEEEcc--hhhHHHHHHHHhhHHhcCCceEEEeeecccCccHHHHHHHHHhhce
Confidence 334444444445556778774 5787765544 4443333110001122334457899999999887788888887775
Q ss_pred cEE--EecCCCChH
Q 025140 83 SFL--EAPVSGSKK 94 (257)
Q Consensus 83 ~~v--dapV~g~~~ 94 (257)
-++ ++||+||-.
T Consensus 295 llisheapvtggfg 308 (362)
T KOG0525|consen 295 LLISHEAPVTGGFG 308 (362)
T ss_pred EEEeccCCccCcch
Confidence 443 899998854
No 320
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.97 E-value=26 Score=28.10 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=23.2
Q ss_pred ccccCCCC-CEEEEcCCCCHHHHHHHHHHHH
Q 025140 49 AASGMGPG-KGYVDVSTVDGDTSKLINGHIK 78 (257)
Q Consensus 49 ~~~~l~~g-~~ivd~ST~~p~~~~~la~~~~ 78 (257)
+...+..+ .++||++-.+|.++|++-..+.
T Consensus 90 ia~~lk~~k~Vvinl~~m~~~qArRivDFla 120 (167)
T COG1799 90 IADYLKNRKAVVINLQRMDPAQARRIVDFLA 120 (167)
T ss_pred HHHHHhcCceEEEEeeeCCHHHHHHHHHHhc
Confidence 34445544 5899999999999999987774
No 321
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=39.58 E-value=63 Score=21.44 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=23.5
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHCCC
Q 025140 213 LGLAESVSQSTPIAAAANELYKVAKSHGL 241 (257)
Q Consensus 213 ~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 241 (257)
.+.+..+++|.++.+.+.++|+.+.+.+.
T Consensus 2 ~r~~~~L~L~~~v~~~A~~i~~~~~~~~~ 30 (71)
T PF00382_consen 2 PRICSKLGLPEDVRERAKEIYKKAQERGL 30 (71)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHhHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 46788899999999999999999988864
No 322
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=38.29 E-value=2e+02 Score=26.34 Aligned_cols=69 Identities=9% Similarity=0.110 Sum_probs=43.8
Q ss_pred ccCCCCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCChHHh----hcCceEEEecCChhHHHHHHHHHHH
Q 025140 51 SGMGPGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSKKPA----EDGQLIFLAAGDKSLYNTVAPLLDI 121 (257)
Q Consensus 51 ~~l~~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a----~~g~l~i~~gg~~~~~~~~~~ll~~ 121 (257)
+....-.+.||.+. -++++++++.+.+++ +..|++-|+. ..... .....+|..+-.-..+..++++++.
T Consensus 209 ea~~~~~l~vDaN~~w~~~~A~~~~~~l~~-~l~~iEeP~~-d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~ 282 (395)
T cd03323 209 EAFPGARLRLDPNGAWSLETAIRLAKELEG-VLAYLEDPCG-GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL 282 (395)
T ss_pred HhCCCCcEEEeCCCCcCHHHHHHHHHhcCc-CCCEEECCCC-CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc
Confidence 33434578999975 578999999999999 9999999997 32222 2223344443222234456666653
No 323
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=38.16 E-value=85 Score=27.45 Aligned_cols=68 Identities=15% Similarity=0.034 Sum_probs=34.5
Q ss_pred hhhhhcCc-cccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 6 NAFYYSRC-RYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 6 ~~~~~~Ga-~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
+.|.+.|. .+.+++.++-+++-+||..=.-+.++++-+ ..+|-.+||.|--.....+...+++.+.|-
T Consensus 46 ~~L~~~Gv~~~v~~~~~v~~~~~ViirAHGv~~~~~~~~---------~~~gl~viDaTCP~V~kv~~~v~~~~~~Gy 114 (280)
T TIGR00216 46 ERLRERGVFFFLEDLDEVAAGDTVIIRAHGVPPEVREEL---------EKKGLEVIDATCPLVTKVHNAVKKYAKEGY 114 (280)
T ss_pred HHHHHCCCEEeecCcccCCCCCEEEEeCCCCCHHHHHHH---------HHCCCeEEeCCCcccHHHHHHHHHHHhCCC
Confidence 45566663 444555554444334444444444443332 124455666666666666666666655553
No 324
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=37.97 E-value=1.9e+02 Score=26.78 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=44.2
Q ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh----HHhhcC----ceEEEecCChhHHHHHHHHHHH
Q 025140 55 PGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK----KPAEDG----QLIFLAAGDKSLYNTVAPLLDI 121 (257)
Q Consensus 55 ~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~----~~a~~g----~l~i~~gg~~~~~~~~~~ll~~ 121 (257)
.-.+.||... -+++++.++++.+++.+..|++-|+...- ....+. ..+|..|-.......++++++.
T Consensus 240 ~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~ 315 (415)
T cd03324 240 DNKLMIDANQRWDVPEAIEWVKQLAEFKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA 315 (415)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhccCCCEEECCCCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc
Confidence 3468999964 68899999999999999999999995432 111121 2455443333334566777654
No 325
>PRK06091 membrane protein FdrA; Validated
Probab=37.92 E-value=75 Score=30.60 Aligned_cols=65 Identities=9% Similarity=-0.015 Sum_probs=43.6
Q ss_pred ccCCHHHHHh---cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 15 YQPSPDEVAA---SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 15 ~~~s~~ea~~---~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
...+..++++ +.|+.++++|.......+- ...+.- ..++|-.+..+...-+++.+.++++|++++
T Consensus 104 ~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~----ea~~~G--~~viI~S~gfg~~~E~~L~e~Ar~~Glrvm 171 (555)
T PRK06091 104 QVRRWDSACQKLPDANLALISVAGEYAAELAE----QALDRN--LNVMMFSDNVTLEDEIRLKTRAREKGLLVM 171 (555)
T ss_pred ccccHHHHHhcCCCCCEEEEecCHHHHHHHHH----HHHHcC--CeEEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 3556667664 5799999999866555443 233321 235666666666777888899999988765
No 326
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.90 E-value=27 Score=30.57 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=24.1
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 65 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~ 65 (257)
.++.+.++++|+||.+++.+.-+. .+.+.+|.+++|....
T Consensus 194 ~~L~~~~~~aDIvI~AtG~~~~v~---------~~~lk~gavViDvg~n 233 (283)
T PRK14192 194 QNLPELVKQADIIVGAVGKPELIK---------KDWIKQGAVVVDAGFH 233 (283)
T ss_pred hhHHHHhccCCEEEEccCCCCcCC---------HHHcCCCCEEEEEEEe
Confidence 446666777888888875444111 1234567777777654
No 327
>PRK08291 ectoine utilization protein EutC; Validated
Probab=37.70 E-value=26 Score=31.25 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=20.5
Q ss_pred ccCCHHHHHhcCCEEEEecCChHH
Q 025140 15 YQPSPDEVAASCDVTFAMLADPES 38 (257)
Q Consensus 15 ~~~s~~ea~~~advvi~~l~~~~~ 38 (257)
..+++.++++++|+||+|.|..+.
T Consensus 187 ~~~d~~~al~~aDiVi~aT~s~~p 210 (330)
T PRK08291 187 VARDVHEAVAGADIIVTTTPSEEP 210 (330)
T ss_pred EeCCHHHHHccCCEEEEeeCCCCc
Confidence 468999999999999999988643
No 328
>PRK07714 hypothetical protein; Provisional
Probab=37.64 E-value=30 Score=25.02 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=28.3
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 55 PGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 55 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
+-++||-.+..+|.+.+++...++.+++.|+..
T Consensus 34 ~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 34 KAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV 66 (100)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 346899999999999999999998888888654
No 329
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=37.61 E-value=3.1e+02 Score=24.76 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=61.6
Q ss_pred cccCCCCCEEEEcC----------CCCHHHHHHHHHHHHHcCCcEEEecCCCChH----Hh------------hcCceEE
Q 025140 50 ASGMGPGKGYVDVS----------TVDGDTSKLINGHIKATGASFLEAPVSGSKK----PA------------EDGQLIF 103 (257)
Q Consensus 50 ~~~l~~g~~ivd~S----------T~~p~~~~~la~~~~~~G~~~vdapV~g~~~----~a------------~~g~l~i 103 (257)
++++.+.-.|+|++ ..++++..++++.+.+.|+++|++--+.+|. .+ ..-++..
T Consensus 40 ~~~m~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~ 119 (347)
T PLN02746 40 LKGLPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPV 119 (347)
T ss_pred hhcCCCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeE
Confidence 34453434566776 5788999999999999999999986444431 00 0111223
Q ss_pred EecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 025140 104 LAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD 166 (257)
Q Consensus 104 ~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld 166 (257)
++ ...+.++++. ++ +...+++.-.-+-...|.-.|.-..-.+.-+.++..++++.|+.
T Consensus 120 l~-~n~~die~A~---~~-g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~ 177 (347)
T PLN02746 120 LT-PNLKGFEAAI---AA-GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIP 177 (347)
T ss_pred Ec-CCHHHHHHHH---Hc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 32 2444444433 32 33333332222223333333333445556677888888888753
No 330
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=37.04 E-value=2.5e+02 Score=24.14 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=44.3
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCc
Q 025140 54 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVG 133 (257)
Q Consensus 54 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G 133 (257)
.+|-+++=-.+-+|..+++++ +.|+.+| |..|.|-+...|- -+ .+.++.+.+.....++.-|.++
T Consensus 121 ~~Gf~vlpyc~dd~~~ar~l~----~~G~~~v--mPlg~pIGsg~Gi------~~---~~~I~~I~e~~~vpVI~egGI~ 185 (248)
T cd04728 121 KEGFTVLPYCTDDPVLAKRLE----DAGCAAV--MPLGSPIGSGQGL------LN---PYNLRIIIERADVPVIVDAGIG 185 (248)
T ss_pred HCCCEEEEEeCCCHHHHHHHH----HcCCCEe--CCCCcCCCCCCCC------CC---HHHHHHHHHhCCCcEEEeCCCC
Confidence 467777766777787776665 4489988 6666666532211 02 3344555554443344345588
Q ss_pred hHHHHHHHHH
Q 025140 134 NGAAMKLVVN 143 (257)
Q Consensus 134 ~a~~~Kl~~n 143 (257)
+++-++.+..
T Consensus 186 tpeda~~Ame 195 (248)
T cd04728 186 TPSDAAQAME 195 (248)
T ss_pred CHHHHHHHHH
Confidence 8877766544
No 331
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=36.98 E-value=26 Score=31.17 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=28.4
Q ss_pred HHHHHhcCCEEEEe--cCChHHHHHHhcCCCcccccCCCCCEEEEcCC
Q 025140 19 PDEVAASCDVTFAM--LADPESAMDVACGKHGAASGMGPGKGYVDVST 64 (257)
Q Consensus 19 ~~ea~~~advvi~~--l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST 64 (257)
.+|.+++.|+||+. +|.-.+=+=+. +...+.+++|.+|||+..
T Consensus 238 ~a~~~~~~DivITTAlIPGrpAP~Lvt---~~mv~sMkpGSViVDlAa 282 (356)
T COG3288 238 VAEQAKEVDIVITTALIPGRPAPKLVT---AEMVASMKPGSVIVDLAA 282 (356)
T ss_pred HHHHhcCCCEEEEecccCCCCCchhhH---HHHHHhcCCCcEEEEehh
Confidence 45778889999985 34333222222 345677899999999864
No 332
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=36.97 E-value=99 Score=20.88 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcC--ceEEEecCChhHHHHHHHHHHHhcC
Q 025140 63 STVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDG--QLIFLAAGDKSLYNTVAPLLDIMGK 124 (257)
Q Consensus 63 ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g--~l~i~~gg~~~~~~~~~~ll~~~~~ 124 (257)
..-.|....++++.+.++|+..+|.-... ..+ .+.+.+..+....++++.-|+.++.
T Consensus 8 g~Dr~GiVa~vs~~la~~g~nI~d~~q~~-----~~~~F~m~~~~~~~~~~~~~l~~~l~~~~~ 66 (77)
T cd04893 8 GTDRPGILNELTRAVSESGCNILDSRMAI-----LGTEFALTMLVEGSWDAIAKLEAALPGLAR 66 (77)
T ss_pred eCCCChHHHHHHHHHHHcCCCEEEceeeE-----EcCEEEEEEEEEeccccHHHHHHHHHHHHH
Confidence 45678889999999999999999988776 233 3345556554445566655555543
No 333
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=36.89 E-value=2.3e+02 Score=23.08 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=44.5
Q ss_pred CCHHHHHh-cCCEEEEecCCh-------HHHHHHhcCCCcccccC--CCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEE
Q 025140 17 PSPDEVAA-SCDVTFAMLADP-------ESAMDVACGKHGAASGM--GPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 86 (257)
Q Consensus 17 ~s~~ea~~-~advvi~~l~~~-------~~v~~v~~~~~~~~~~l--~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vd 86 (257)
.+..++++ ++|-|-++++-. +.+.+-+ ..+.+.. .+=+++++..-.+++......+.+.+.|++||-
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei---~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IK 149 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEI---AAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIK 149 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHH---HHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 44667776 588777666532 2222221 1122211 234567888888899988999999999999998
Q ss_pred ec
Q 025140 87 AP 88 (257)
Q Consensus 87 ap 88 (257)
.+
T Consensus 150 Ts 151 (203)
T cd00959 150 TS 151 (203)
T ss_pred cC
Confidence 87
No 334
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=36.49 E-value=41 Score=28.23 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=35.9
Q ss_pred CCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc-EEEe
Q 025140 17 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLEA 87 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~-~vda 87 (257)
.++.++++++|++|-+.+-.--.. ..++.+.++.+++++++-.+ ..+.+.+.+.|+. +.+.
T Consensus 89 ~~l~~~l~~~dvlIgaT~~G~~~~-------~~l~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~i~a~G 150 (226)
T cd05311 89 GTLKEALKGADVFIGVSRPGVVKK-------EMIKKMAKDPIVFALANPVP---EIWPEEAKEAGADIVATG 150 (226)
T ss_pred CCHHHHHhcCCEEEeCCCCCCCCH-------HHHHhhCCCCEEEEeCCCCC---cCCHHHHHHcCCcEEEeC
Confidence 367788888999988886221111 22334456778888883222 2355555556765 5543
No 335
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=35.78 E-value=3.2e+02 Score=24.74 Aligned_cols=81 Identities=10% Similarity=0.037 Sum_probs=48.7
Q ss_pred cccCCHHHHHh-cCCEEEEecCChH-----HHHH---HhcCCC--c---ccccCCCCCEEEEcC--CCCHHHHHHHHHHH
Q 025140 14 RYQPSPDEVAA-SCDVTFAMLADPE-----SAMD---VACGKH--G---AASGMGPGKGYVDVS--TVDGDTSKLINGHI 77 (257)
Q Consensus 14 ~~~~s~~ea~~-~advvi~~l~~~~-----~v~~---v~~~~~--~---~~~~l~~g~~ivd~S--T~~p~~~~~la~~~ 77 (257)
....|++||++ +||.|-+.+.-.. .+++ +....+ | ++-..+.|.-+-+-. +..|+.....+...
T Consensus 147 ~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRia 226 (348)
T PRK09250 147 ALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLA 226 (348)
T ss_pred cceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHH
Confidence 35678999996 4887766553321 1222 111101 1 111234566665544 45688877778888
Q ss_pred HHcCCcEEEecCCCChH
Q 025140 78 KATGASFLEAPVSGSKK 94 (257)
Q Consensus 78 ~~~G~~~vdapV~g~~~ 94 (257)
.+.|+++|-.+-.+.+.
T Consensus 227 aELGADIVKv~yp~~~~ 243 (348)
T PRK09250 227 ATIGADIIKQKLPTNNG 243 (348)
T ss_pred HHHcCCEEEecCCCChh
Confidence 88999999998886543
No 336
>PRK06242 flavodoxin; Provisional
Probab=35.63 E-value=1.2e+02 Score=23.02 Aligned_cols=65 Identities=12% Similarity=-0.016 Sum_probs=40.0
Q ss_pred HHHhcCCEEEEecCCh-----HHHHHHhcCCCcccccCCCCCEE---EEcCCCCHHHHHHHHHHHHHcCCcEEEecCC
Q 025140 21 EVAASCDVTFAMLADP-----ESAMDVACGKHGAASGMGPGKGY---VDVSTVDGDTSKLINGHIKATGASFLEAPVS 90 (257)
Q Consensus 21 ea~~~advvi~~l~~~-----~~v~~v~~~~~~~~~~l~~g~~i---vd~ST~~p~~~~~la~~~~~~G~~~vdapV~ 90 (257)
+-+.++|.||+..|.. ..+++.+ +.+- .+ .++.+ ..+.+..+...+.+.+.+..+|..++..-..
T Consensus 39 ~~~~~~d~ii~g~pvy~~~~~~~~~~fl---~~~~-~~-~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~~~~~~~ 111 (150)
T PRK06242 39 EDLSEYDLIGFGSGIYFGKFHKSLLKLI---EKLP-PV-SGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEIVGEFSC 111 (150)
T ss_pred ccHhHCCEEEEeCchhcCCcCHHHHHHH---Hhhh-hh-cCCeEEEEECCCCCcchHHHHHHHHHHHCCCEEEEEEec
Confidence 3467899999998863 4455555 2221 11 23332 2223344456788999999999998876433
No 337
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=35.62 E-value=2.8e+02 Score=25.31 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=44.4
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-----HHhhcCceEEEecCChhHHHHHHHHHHH
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-----KPAEDGQLIFLAAGDKSLYNTVAPLLDI 121 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-----~~a~~g~l~i~~gg~~~~~~~~~~ll~~ 121 (257)
-.+.||... -+++++.++.+.+++.++.|++-|+...- .-...-..+|+.|-.--....++++++.
T Consensus 206 ~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~ 277 (385)
T cd03326 206 ARLAVDANGRFDLETAIAYAKALAPYGLRWYEEPGDPLDYALQAELADHYDGPIATGENLFSLQDARNLLRY 277 (385)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhCcCCCEEECCCCccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHh
Confidence 368999965 67899999999999999999999995432 1112223454444333345567777653
No 338
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=35.36 E-value=43 Score=29.25 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=31.9
Q ss_pred cCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCH
Q 025140 16 QPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG 67 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p 67 (257)
..++.+.++++|++|+++.-+.-+.. +...+|.++||-.+...
T Consensus 190 T~~l~~~~k~ADIvv~AvG~p~~i~~---------d~vk~gavVIDVGinrv 232 (283)
T COG0190 190 TKDLASITKNADIVVVAVGKPHFIKA---------DMVKPGAVVIDVGINRV 232 (283)
T ss_pred CCCHHHHhhhCCEEEEecCCcccccc---------ccccCCCEEEecCCccc
Confidence 35789999999999999987664441 23468888888766544
No 339
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=34.93 E-value=1.8e+02 Score=22.93 Aligned_cols=26 Identities=8% Similarity=-0.198 Sum_probs=18.7
Q ss_pred CHHHHHhcCCEEEEecCCh-----HHHHHHh
Q 025140 18 SPDEVAASCDVTFAMLADP-----ESAMDVA 43 (257)
Q Consensus 18 s~~ea~~~advvi~~l~~~-----~~v~~v~ 43 (257)
...+.+.+||.||+..|.+ ..++..+
T Consensus 61 ~~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~l 91 (174)
T TIGR03566 61 RILQAIESADLLVVGSPVYRGSYTGLFKHLF 91 (174)
T ss_pred HHHHHHHHCCEEEEECCcCcCcCcHHHHHHH
Confidence 3446677899999999874 4556555
No 340
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=34.69 E-value=55 Score=23.24 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=20.9
Q ss_pred CccccCCHHHHHhc--CCEEEEecCChHHH
Q 025140 12 RCRYQPSPDEVAAS--CDVTFAMLADPESA 39 (257)
Q Consensus 12 Ga~~~~s~~ea~~~--advvi~~l~~~~~v 39 (257)
|..+..+..|+.+. .|+.|+|+|...+-
T Consensus 47 gipV~~~~~~l~~~~~i~iaii~VP~~~a~ 76 (96)
T PF02629_consen 47 GIPVYGSMDELEEFIEIDIAIITVPAEAAQ 76 (96)
T ss_dssp TEEEESSHHHHHHHCTTSEEEEES-HHHHH
T ss_pred CEEeeccHHHhhhhhCCCEEEEEcCHHHHH
Confidence 55566788888887 99999999875543
No 341
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=34.35 E-value=50 Score=29.63 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=12.9
Q ss_pred HHHHHHHHHHCCCCCcchHHH
Q 025140 229 ANELYKVAKSHGLSDEDFSAV 249 (257)
Q Consensus 229 ~~~~~~~a~~~g~g~~d~~a~ 249 (257)
..+..+.+.+.|....|+..+
T Consensus 259 ~~~~~~~~~~~~rp~~d~~e~ 279 (341)
T PRK04207 259 TAELIEYARDLGRPRGDLYEN 279 (341)
T ss_pred hHHHhHHHHHcCCCcccchhh
Confidence 445555555777777776554
No 342
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=34.28 E-value=28 Score=30.43 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=32.2
Q ss_pred chhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 5 NNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
.+.|.+.|..+.+++.|+-.++-+||..=.-+.++++-+ ..+|-.+||.|--.....+++.+.+.+.|-
T Consensus 44 v~~L~~~Gv~~v~~~~~~~~g~~ViirAHGv~~~~~~~l---------~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy 112 (281)
T PF02401_consen 44 VERLEKRGVKVVDDIDEVPEGDTVIIRAHGVPPEVYEEL---------KERGLEVIDATCPFVKKIHKIVRKYAKEGY 112 (281)
T ss_dssp HHHHHHCTEEEESSGCGS-TTEEEEE-TT---HHHHHHH---------HHTTEEEEE---HHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHCCCEEecCccccCCCCEEEEeCCCCCHHHHHHH---------HHcCCEEEECCChhHHHHHHHHHHHHhcCC
Confidence 355666676666666555544434443333333333332 124556666666666666666666655553
No 343
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.02 E-value=35 Score=22.26 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCcEEEecCCCChHH
Q 025140 68 DTSKLINGHIKATGASFLEAPVSGSKKP 95 (257)
Q Consensus 68 ~~~~~la~~~~~~G~~~vdapV~g~~~~ 95 (257)
..+.+++..++..|++||--||..-...
T Consensus 10 R~~lE~A~~La~~GIRFVpiPv~~dee~ 37 (61)
T PF07131_consen 10 RKALEMAHSLAHIGIRFVPIPVVTDEEF 37 (61)
T ss_pred HHHHHHHHHHHHcCceeeccccccHHHH
Confidence 4455678888889999999998754433
No 344
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=34.01 E-value=62 Score=24.23 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=21.9
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 55 PGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 55 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
...++||.| .|+...+..+.+.++|..+|
T Consensus 67 ~~DVvIDfT--~p~~~~~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 67 EADVVIDFT--NPDAVYDNLEYALKHGVPLV 95 (124)
T ss_dssp H-SEEEEES---HHHHHHHHHHHHHHT-EEE
T ss_pred cCCEEEEcC--ChHHhHHHHHHHHhCCCCEE
Confidence 356999999 89999999999988887543
No 345
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=33.84 E-value=1.1e+02 Score=26.04 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=42.6
Q ss_pred CccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCC-EEEEcCCCCHHHHHHHHHHHHHcCCcEEEecC
Q 025140 12 RCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATGASFLEAPV 89 (257)
Q Consensus 12 Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~-~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV 89 (257)
|....+++.++++++|+||.+.+. +...++. ... +..|+ +++-.+-.+++...+|.+ ++ +++..+=+|-
T Consensus 47 ~i~~~~dl~~ll~~~DvVid~t~p-~~~~~~~---~~a---l~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n 116 (257)
T PRK00048 47 GVAITDDLEAVLADADVLIDFTTP-EATLENL---EFA---LEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPN 116 (257)
T ss_pred CccccCCHHHhccCCCEEEECCCH-HHHHHHH---HHH---HHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECc
Confidence 555678999999899999877754 4444444 222 33454 555544457888878876 43 5554444443
No 346
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=33.78 E-value=62 Score=24.82 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=31.1
Q ss_pred cCCEEEEecCChHH-HHHHhcCCCcccccCCCCCEEEEcCCCCH-HH----HHHHHHHHHHc-CCcEEEe
Q 025140 25 SCDVTFAMLADPES-AMDVACGKHGAASGMGPGKGYVDVSTVDG-DT----SKLINGHIKAT-GASFLEA 87 (257)
Q Consensus 25 ~advvi~~l~~~~~-v~~v~~~~~~~~~~l~~g~~ivd~ST~~p-~~----~~~la~~~~~~-G~~~vda 87 (257)
..|+||+++.+-+. .++-+ +.+++.+.++..|+-+++-.| .. .+.+.+.++++ ++.|+|-
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl---~~ii~~~~~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~~~v~~id~ 116 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQL---DELLDALGPDRQVYLVNPHVPRPWEPDVNAYLLDAAKKYKNVTIIDW 116 (150)
T ss_pred CCCeEEEEecCCCCCCHHHH---HHHHHHcCCCCEEEEEECCCCcchHHHHHHHHHHHHHHCCCcEEecH
Confidence 47999999876442 11111 234444445455544444333 12 22244445555 7888884
No 347
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=33.59 E-value=2.6e+02 Score=24.56 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHH---cCCcEEEecCCCC
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKA---TGASFLEAPVSGS 92 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~---~G~~~vdapV~g~ 92 (257)
-++.||... -+++++.++.+.+++ .++.|++-|+...
T Consensus 155 ~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iEqP~~~~ 195 (307)
T TIGR01927 155 AELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLEEPLPDA 195 (307)
T ss_pred CeEEEeCCCCCCHHHHHHHHHhcccccCCCceEEeCCCCCH
Confidence 479999964 788999999999987 7899999999554
No 348
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.13 E-value=1.7e+02 Score=25.99 Aligned_cols=40 Identities=13% Similarity=0.314 Sum_probs=30.1
Q ss_pred CcccccCCCC-CEEEEcC-------CCCHHHHHHHHHHHHHcCCcEEE
Q 025140 47 HGAASGMGPG-KGYVDVS-------TVDGDTSKLINGHIKATGASFLE 86 (257)
Q Consensus 47 ~~~~~~l~~g-~~ivd~S-------T~~p~~~~~la~~~~~~G~~~vd 86 (257)
+.+-+...++ .+.|++| ..+++++.++++.+++.|+.|++
T Consensus 207 ~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~ie 254 (338)
T cd04733 207 DAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVE 254 (338)
T ss_pred HHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3444444444 5778887 35789999999999999999998
No 349
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.75 E-value=1.8e+02 Score=24.75 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=31.1
Q ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCC
Q 025140 55 PGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVS 90 (257)
Q Consensus 55 ~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~ 90 (257)
.-.+.+|... -+++++.++.+.+++.++.|++-|+.
T Consensus 127 ~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iEqP~~ 163 (263)
T cd03320 127 DAKLRLDANGGWSLEEALAFLEALAAGRIEYIEQPLP 163 (263)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHhhcccCCceEECCCC
Confidence 3468899875 67899999999999999999999996
No 350
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=32.35 E-value=2.1e+02 Score=23.19 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=19.9
Q ss_pred CceEEEecCChhHHHHHHHHHHHhcC
Q 025140 99 GQLIFLAAGDKSLYNTVAPLLDIMGK 124 (257)
Q Consensus 99 g~l~i~~gg~~~~~~~~~~ll~~~~~ 124 (257)
+...++.+||.-.|.....+.+.+..
T Consensus 67 ~~vv~l~~GDP~~~~~~~~l~~~~~~ 92 (204)
T TIGR02467 67 KRVVVLASGDPLFYGIGRTLAERLGK 92 (204)
T ss_pred CCEEEEecCCCcccccHHHHHHhCCC
Confidence 34567778999888888888887764
No 351
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=32.22 E-value=47 Score=23.24 Aligned_cols=33 Identities=6% Similarity=-0.066 Sum_probs=28.4
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 55 PGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 55 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
+.++||-.+..++.+...+...++.+++.|+..
T Consensus 24 kakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~ 56 (82)
T PRK13601 24 NVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYI 56 (82)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 456889999999999999999999999988644
No 352
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.20 E-value=1.1e+02 Score=26.35 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHH
Q 025140 65 VDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL 118 (257)
Q Consensus 65 ~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~l 118 (257)
...+..+++.++++++|+.++..+ ..-.+.+.+|||...+..++.+
T Consensus 14 ~a~~~~~~l~~~l~~~g~~~~~~~--------~~~D~vi~lGGDGT~L~a~~~~ 59 (264)
T PRK03501 14 ELVEKVKPLKKIAEEYGFTVVDHP--------KNANIIVSIGGDGTFLQAVRKT 59 (264)
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCC--------CCccEEEEECCcHHHHHHHHHh
Confidence 334456667888888998765431 2347899999999988777664
No 353
>PLN02321 2-isopropylmalate synthase
Probab=31.92 E-value=5.1e+02 Score=25.55 Aligned_cols=101 Identities=10% Similarity=0.089 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEe--cCCCChHH-----h-hc--C---------ceEEEecCChhHHHHHHHHHHHhcC
Q 025140 64 TVDGDTSKLINGHIKATGASFLEA--PVSGSKKP-----A-ED--G---------QLIFLAAGDKSLYNTVAPLLDIMGK 124 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vda--pV~g~~~~-----a-~~--g---------~l~i~~gg~~~~~~~~~~ll~~~~~ 124 (257)
+.++++..++++.+.+.|+++|++ |.++.... . .. . .+..+.-...+.++++...+.....
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~ 183 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKR 183 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCC
Confidence 688999999999999999999997 33322211 1 11 0 0111222344444433332222211
Q ss_pred -CceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 125 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 125 -~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
.+..+.+.-.-+ ++...|.-.--.+..+.+++.++++.|.
T Consensus 184 ~~I~i~~stSd~h-~~~~l~~t~ee~l~~~~~~V~~Ak~~G~ 224 (632)
T PLN02321 184 PRIHTFIATSEIH-MEHKLRKTPDEVVEIARDMVKYARSLGC 224 (632)
T ss_pred CEEEEEEcCCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 233333333333 2223344455666778888899998876
No 354
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.80 E-value=2.6e+02 Score=22.14 Aligned_cols=80 Identities=20% Similarity=0.152 Sum_probs=49.2
Q ss_pred HHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCc
Q 025140 21 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQ 100 (257)
Q Consensus 21 ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~ 100 (257)
|+++++|++ ++|...+.-.. .+. |.-+- .....++....+-+.+...+.
T Consensus 1 ~~~~~adlv---~~DG~~i~~~~----~~~-----g~~~~-~rv~g~dl~~~l~~~~~~~~~------------------ 49 (172)
T PF03808_consen 1 EALNSADLV---LPDGMPIVWAA----RLL-----GRPLP-ERVTGSDLFPDLLRRAEQRGK------------------ 49 (172)
T ss_pred ChHHhCCEE---ecCCHHHHHHH----HHc-----CCCCC-cccCHHHHHHHHHHHHHHcCC------------------
Confidence 456777876 57766654332 111 22221 344556777777666655443
Q ss_pred eEEEecCChhHHHHHHHHHHHhcCCceecCC
Q 025140 101 LIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 131 (257)
Q Consensus 101 l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~ 131 (257)
-..++||++++.+++...|+.-..++..+|.
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~ 80 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRYPGLRIVGY 80 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 2678899999989888888777666555553
No 355
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=31.75 E-value=4.9e+02 Score=25.24 Aligned_cols=100 Identities=11% Similarity=0.063 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEec--CCCChHHh-------hcC------ceEEEecCChhHHHHHHHHHHHhcCCcee
Q 025140 64 TVDGDTSKLINGHIKATGASFLEAP--VSGSKKPA-------EDG------QLIFLAAGDKSLYNTVAPLLDIMGKSRFY 128 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vdap--V~g~~~~a-------~~g------~l~i~~gg~~~~~~~~~~ll~~~~~~~~~ 128 (257)
+.++++..++++.+.+.|++++++. ..+ +... ..+ ++..++-.-+..+++.-..+.......++
T Consensus 44 ~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s-~~D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~~~v~ 122 (564)
T TIGR00970 44 PMSPARKRRYFDLLVRIGFKEIEVGFPSAS-QTDFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKRATVH 122 (564)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCCCEEE
Confidence 5789999999999999999999975 333 2222 111 12223333344344433333333322333
Q ss_pred c-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 129 L-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 129 ~-G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
+ .+.- -...+-..|.-..-.+..+.|+..+++..|.
T Consensus 123 i~~~~S-d~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~ 159 (564)
T TIGR00970 123 FYNATS-ILFREVVFRASRAEVQAIATDGTKLVRKCTK 159 (564)
T ss_pred EEEcCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3 3332 2333333344445566777888888887653
No 356
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=31.40 E-value=83 Score=22.87 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhcc
Q 025140 150 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLK 187 (257)
Q Consensus 150 ~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~ 187 (257)
++..--+..+|++.|++.+.+++.|+.+ .+|.++..
T Consensus 46 var~~GMsqvA~~aGlsRe~LYkaLS~~--GNPtf~Ti 81 (100)
T COG3636 46 VARSRGMSQVARKAGLSREGLYKALSPG--GNPTFDTI 81 (100)
T ss_pred HHHhcCHHHHHHHhCccHHHHHHHhCCC--CCCcHHHH
Confidence 4444556688999999999999999875 34555443
No 357
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=31.29 E-value=93 Score=30.59 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=53.0
Q ss_pred chhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 5 NNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
.+.|.+.|.++.+++.++-.++-+||..=.-+.++++-+ ...|-.+||.|--.+...+..++.+.+.|-..
T Consensus 46 v~~l~~~Gv~~v~~~~~~~~~~~vii~aHG~~~~~~~~~---------~~~~~~viDaTCP~V~k~~~~~~~~~~~g~~i 116 (647)
T PRK00087 46 VEKLKKKGIKPIEDIDELNEGDTIIIRSHGVPPEVLEEL---------KDKGLKVIDATCPFVKNIQKLAKKYYEEGYQI 116 (647)
T ss_pred HHHHHHCCCEEeCCHhhCCCCCEEEEeCCCCCHHHHHHH---------HHCCCeEEECCCcCchHHHHHHHHHHhCCCEE
Confidence 467889999999998887656556665555566655444 13677889999999999999998888887543
No 358
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=31.12 E-value=3e+02 Score=28.04 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhcCCceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025140 110 SLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL 165 (257)
Q Consensus 110 ~~~~~~~~ll~~~~~~~~~~G~--~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 165 (257)
.+++.++.+++. |.++..+-+ .|+-+. +.+++. .-..+.|++.-|++.|.
T Consensus 608 Pii~~l~~l~~~-gd~i~~i~GIlnGT~ny---i~~~~~--~g~~f~eal~~Aq~~Gy 659 (810)
T PRK09466 608 PINHTVRDLRNS-GDSILAISGIFSGTLSW---LFLQFD--GSVPFSELVDQAWQQGL 659 (810)
T ss_pred ChHHHHHHHHhc-cCcEEEEEEEEccHHHH---HHHHHh--cCCCHHHHHHHHHHcCC
Confidence 345666666554 777877744 465444 223332 23568899999998886
No 359
>PRK06852 aldolase; Validated
Probab=30.99 E-value=1.9e+02 Score=25.62 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=79.6
Q ss_pred cccCCHHHHHh-c------CCEEEEecCChH-----HHHH---HhcCCC--cc---cccCCCCCEEEEcCCCCHHHHHHH
Q 025140 14 RYQPSPDEVAA-S------CDVTFAMLADPE-----SAMD---VACGKH--GA---ASGMGPGKGYVDVSTVDGDTSKLI 73 (257)
Q Consensus 14 ~~~~s~~ea~~-~------advvi~~l~~~~-----~v~~---v~~~~~--~~---~~~l~~g~~ivd~ST~~p~~~~~l 73 (257)
....|+.||++ + ||.|-+.+.-.. .+++ +....+ |+ .-..+.|.-+ .....|+.....
T Consensus 116 ~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i--~~~~~~~~ia~a 193 (304)
T PRK06852 116 RQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV--KDEKDPHLIAGA 193 (304)
T ss_pred cceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCccc--CCCccHHHHHHH
Confidence 46778999997 2 677766553321 1222 111101 11 1122455554 234468888888
Q ss_pred HHHHHHcCCcEEEecCC-----CChHHh-----hc-CceEEEecCChh----HHHHHHHHHHHhcCCceecCCCchHHHH
Q 025140 74 NGHIKATGASFLEAPVS-----GSKKPA-----ED-GQLIFLAAGDKS----LYNTVAPLLDIMGKSRFYLGDVGNGAAM 138 (257)
Q Consensus 74 a~~~~~~G~~~vdapV~-----g~~~~a-----~~-g~l~i~~gg~~~----~~~~~~~ll~~~~~~~~~~G~~G~a~~~ 138 (257)
++...+.|+++|-.+-. +.+..- .. ..-+++.||++. .++.++..++. .|..|..
T Consensus 194 aRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~-------aGa~Gv~--- 263 (304)
T PRK06852 194 AGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHI-------SGASGNA--- 263 (304)
T ss_pred HHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHH-------cCCceee---
Confidence 88888999999999987 443322 12 233577778763 23333333321 2222211
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHcCCCHHHHHHHHh
Q 025140 139 KLVVNMIMGSMM--ATFSEGLLHSEKVGLDPNVLVEVVS 175 (257)
Q Consensus 139 Kl~~n~~~~~~~--~~~~Ea~~la~~~Gld~~~~~~~l~ 175 (257)
+-.|.+..-.. ..+..++.-.-..|.+++..+++++
T Consensus 264 -~GRNIfQ~~~p~~~~~~~Ai~~IVH~~~s~~eA~~~~~ 301 (304)
T PRK06852 264 -TGRNIHQKPLDEAVRMCNAIYAITVEDKSVEEALKIYN 301 (304)
T ss_pred -echhhhcCCCchHHHHHHHHHHHHhCCCCHHHHHHHhc
Confidence 11455555444 5555555555567777777666554
No 360
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=30.73 E-value=37 Score=27.41 Aligned_cols=42 Identities=24% Similarity=0.131 Sum_probs=24.2
Q ss_pred HHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCH
Q 025140 20 DEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG 67 (257)
Q Consensus 20 ~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p 67 (257)
.++++++|+||.+.|.+...... ......++.+++|++-.++
T Consensus 92 ~~~~~~~diVi~at~~g~~~~~~------~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 92 AAAIKGADVVFAAGAAGVELLEK------LAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred HHHHhcCCEEEECCCCCceechh------hhcccCceeEEEEccCCCC
Confidence 46777888888887766531100 1112234678888865544
No 361
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=30.69 E-value=1.1e+02 Score=28.04 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=43.9
Q ss_pred CCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-H---HhhcC-ceEEEec-CCh-hHHHHHHHHHHH
Q 025140 56 GKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-K---PAEDG-QLIFLAA-GDK-SLYNTVAPLLDI 121 (257)
Q Consensus 56 g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-~---~a~~g-~l~i~~g-g~~-~~~~~~~~ll~~ 121 (257)
-.+.||+.. -+++++.++++.+++.|+.|++-|+.-.- . ..... ...+.+. |+. .....++++++.
T Consensus 209 ~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~ 282 (394)
T PRK15440 209 FWLMLDCWMSLDVNYATKLAHACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEM 282 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHc
Confidence 368999975 68899999999999999999999995321 1 11121 2224443 433 234557777764
No 362
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=30.67 E-value=1.4e+02 Score=23.42 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=17.0
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 57 KGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 57 ~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
.+|++.........+++.+.+++.|..+
T Consensus 147 ~vV~N~~~~~~~~~~~~~~~~~~~~~~v 174 (179)
T cd03110 147 GVVINKYDLNDEIAEEIEDYCEEEGIPI 174 (179)
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCe
Confidence 3666666555555566666676666544
No 363
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=30.64 E-value=2.8e+02 Score=23.41 Aligned_cols=43 Identities=16% Similarity=0.033 Sum_probs=36.0
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhh
Q 025140 54 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 97 (257)
Q Consensus 54 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~ 97 (257)
.++.++++..+.+|+...++++.+.+ ++.++|--..++.+...
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~ 108 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEIT 108 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHc
Confidence 36689999999999999999999966 78999988877766553
No 364
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=30.21 E-value=92 Score=25.80 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=27.2
Q ss_pred HHHHhcCCEEEEe--cCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHH
Q 025140 20 DEVAASCDVTFAM--LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 70 (257)
Q Consensus 20 ~ea~~~advvi~~--l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~ 70 (257)
.+...+||+||+. +-+++-...+ ..++..+++|..||-+.+..|..-
T Consensus 117 ~~~~s~AdvVf~Nn~~F~~~l~~~L----~~~~~~lk~G~~IIs~~~~~~~~~ 165 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCFDPDLNLAL----AELLLELKPGARIISTKPFCPRRR 165 (205)
T ss_dssp HHHGHC-SEEEE--TTT-HHHHHHH----HHHHTTS-TT-EEEESS-SS-TT-
T ss_pred hhhhcCCCEEEEeccccCHHHHHHH----HHHHhcCCCCCEEEECCCcCCCCc
Confidence 4556899999983 4444444444 355667899999998888887753
No 365
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=30.19 E-value=3.2e+02 Score=24.41 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=34.8
Q ss_pred EEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 025140 102 IFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNV 169 (257)
Q Consensus 102 ~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~ 169 (257)
.++.|-+.+-|+++-++...++-.++-..+.. +..+-+....+.++|++++.
T Consensus 154 pLInSat~en~~~i~~lA~~y~~~Vva~s~~D----------------ln~ak~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 154 CLLGSAEEDNYKKIAAAAMAYGHAVIAWSPLD----------------INLAKQLNILLTELGVPRER 205 (319)
T ss_pred CEEEECCHHHHHHHHHHHHHhCCeEEEEcHHH----------------HHHHHHHHHHHHHcCCCHHH
Confidence 46667777778888888888887665443222 33455666677788887664
No 366
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=30.14 E-value=3.1e+02 Score=23.05 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=35.2
Q ss_pred EcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhh---------cC-c---eEEEecCChhHHHHHHHHHHHhcCCce
Q 025140 61 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE---------DG-Q---LIFLAAGDKSLYNTVAPLLDIMGKSRF 127 (257)
Q Consensus 61 d~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~---------~g-~---l~i~~gg~~~~~~~~~~ll~~~~~~~~ 127 (257)
-.-+..|+.+.++...+++.|+.+|=.|...+..+.+ .| . --.|++=++.-...+.++++.||+..+
T Consensus 56 I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGkP~~ 135 (217)
T PF02593_consen 56 IAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGKPKV 135 (217)
T ss_pred EEeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCCceE
Confidence 3345666666666666666666666555554431110 01 0 023444443334557778888987543
No 367
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=29.65 E-value=57 Score=22.02 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcC
Q 025140 63 STVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 124 (257)
Q Consensus 63 ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~ 124 (257)
+.-.|....++.+.+.++|+..+|.-..--.. .-.+.+++.++.+..++++.-|+.++.
T Consensus 9 G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~---~f~~~~~v~~~~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 9 GPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGG---RFTLIMLVSIPEDSLERLESALEELAE 67 (76)
T ss_dssp EE--TTHHHHHHHHHHCTT-EEEEEEEEEETT---EEEEEEEEEESHHHHHHHHHHHHHHHH
T ss_pred ecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcC---eEEEEEEEEeCcccHHHHHHHHHHHHH
Confidence 34668888999999999999998876432111 123577888888777888777766543
No 368
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=29.57 E-value=2.8e+02 Score=21.80 Aligned_cols=50 Identities=10% Similarity=-0.091 Sum_probs=28.1
Q ss_pred CCHHHHHhcCCEEEEecCCh-----HHHHHHhcCCCcccccCCCCCEEEEcCC-CCHHH
Q 025140 17 PSPDEVAASCDVTFAMLADP-----ESAMDVACGKHGAASGMGPGKGYVDVST-VDGDT 69 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~-----~~v~~v~~~~~~~~~~l~~g~~ivd~ST-~~p~~ 69 (257)
....+-+.+||.||+..|-+ ..++..+ +-+......++.+.-.+| ..+..
T Consensus 57 ~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~i---D~~~~~~l~~K~v~~~~~gg~~~~ 112 (171)
T TIGR03567 57 KAATAQVAQADGVVVATPVYKASYSGVLKALL---DLLPQRALRGKVVLPIATGGSIAH 112 (171)
T ss_pred HHHHHHHHHCCEEEEECCcccCCCCHHHHHHH---HhCChhhhCCCEEEEEEcCCchhH
Confidence 34456677899999999874 4566665 222222335554443333 34444
No 369
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=29.49 E-value=2.3e+02 Score=24.64 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=45.8
Q ss_pred ccccCCHHHH-HhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCC---CCHHHHHHHHHHHHHcCCc
Q 025140 13 CRYQPSPDEV-AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST---VDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 13 a~~~~s~~ea-~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST---~~p~~~~~la~~~~~~G~~ 83 (257)
+..++|+.++ ....|+|+=|-+ ++++++.. ..+ |..|+-+|-+|. ..++.-+++.+.+++.|.+
T Consensus 49 ~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~---~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~ 116 (267)
T PRK13301 49 VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHA---EGC---LTAGLDMIICSAGALADDALRARLIAAAEAGGAR 116 (267)
T ss_pred CcccCCHHHHhhcCCCEEEECCC-HHHHHHHH---HHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCE
Confidence 7789999996 688999977655 67777765 333 446777777775 4556777788778777654
No 370
>PRK05569 flavodoxin; Provisional
Probab=29.27 E-value=2.5e+02 Score=21.05 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=50.6
Q ss_pred HHHhcCCEEEEecCCh-------HHHHHHhcCCCcccccCCCCCEEEEcCCC---CHHHHHHHHHHHHHcCCcEEEecCC
Q 025140 21 EVAASCDVTFAMLADP-------ESAMDVACGKHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGASFLEAPVS 90 (257)
Q Consensus 21 ea~~~advvi~~l~~~-------~~v~~v~~~~~~~~~~l~~g~~ivd~ST~---~p~~~~~la~~~~~~G~~~vdapV~ 90 (257)
+-+.++|.||+..|+. ..+..++ +.+.....+|+.++-.+|- ..+..+.+.+.++..|..+++. +
T Consensus 44 ~~~~~~d~iilgsPty~~~~~~~~~~~~~~---~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~-~- 118 (141)
T PRK05569 44 EDVLEADAVAFGSPSMDNNNIEQEEMAPFL---DQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGD-L- 118 (141)
T ss_pred HHHhhCCEEEEECCCcCCCcCChHHHHHHH---HHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeee-E-
Confidence 3566899999999873 2456665 2222112356655444442 2455667888888888877552 1
Q ss_pred CChHHhhcCceEEEec-CChhHHHHHHHHHHHh
Q 025140 91 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIM 122 (257)
Q Consensus 91 g~~~~a~~g~l~i~~g-g~~~~~~~~~~ll~~~ 122 (257)
. +-| -+++.+++++++-+.+
T Consensus 119 -----------~-~~~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 119 -----------A-VNESPNKEELNSAKELGKKL 139 (141)
T ss_pred -----------E-EccCCCHHHHHHHHHHHHHH
Confidence 1 113 3557777877775554
No 371
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.80 E-value=4e+02 Score=23.69 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHH-------HHHHHHHhc--------CC-ceecCCC
Q 025140 69 TSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNT-------VAPLLDIMG--------KS-RFYLGDV 132 (257)
Q Consensus 69 ~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~-------~~~ll~~~~--------~~-~~~~G~~ 132 (257)
..+++.+.+++.|+++ ..-.++.+++-+-+++++++ ...+|+.|| .. ++|+|+.
T Consensus 95 ~l~~iG~~a~~~~iRL----------S~Hp~qfi~LnS~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~ 164 (312)
T TIGR00629 95 ELREIGELAKTHQHRL----------TFHPGQFTQFTSPRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGA 164 (312)
T ss_pred HHHHHHHHHHHcCeEE----------EECCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcC
Confidence 4455666777777775 22334545555566666554 345666676 22 4778773
Q ss_pred -c--hHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHcCCC
Q 025140 133 -G--NGAAMKLVVNMIMGSMM-------------ATFSEGLLHSEKVGLD 166 (257)
Q Consensus 133 -G--~a~~~Kl~~n~~~~~~~-------------~~~~Ea~~la~~~Gld 166 (257)
| .+..-+...|+-...-. -.+-|.+.+|++.|++
T Consensus 165 ~gdk~~alerf~~n~~~L~~~i~~rL~lEnd~k~~sl~evL~lc~e~~iP 214 (312)
T TIGR00629 165 FGNKDTTLARFHQNYKRLSQSIKERLVLENDDVTWTVEDLLPVCEELNIP 214 (312)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHhcEEeccCCCcCCHHHHHHHHHhcCCC
Confidence 3 23333344444321111 2356777777765544
No 372
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=28.79 E-value=93 Score=22.75 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC-Cchhhhccccc-cccCCCCCCCchhhHHHHHHHHHHHHHhcCCCcH
Q 025140 149 MMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSLKGPS-MIESLYPTAFPLKHQQKDLRLALGLAESVSQSTP 224 (257)
Q Consensus 149 ~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~-~s~~~~~~~~~-~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~p 224 (257)
...+..+.-.+++++|++--. .+.-|-+ .+..+-++.|. ++=++-. ..|+.+++.+|++.|+|..
T Consensus 18 ~~~g~~~v~~i~~~~gI~diN---~IKPGIgEaTRvLLRRvP~~vLVr~~~--------~pd~~Hl~~LA~ekgVpVe 84 (100)
T PF15608_consen 18 TWQGWAEVERIAERYGISDIN---LIKPGIGEATRVLLRRVPWKVLVRDPD--------DPDLAHLLLLAEEKGVPVE 84 (100)
T ss_pred hHHHHHHHHHHHHHhCCCCcc---cccCChhHHHHHHHhcCCCEEEECCCC--------CccHHHHHHHHHHcCCcEE
Confidence 345677777889999986432 2222222 33444455554 3322221 2599999999999999874
No 373
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=28.69 E-value=5.2e+02 Score=24.67 Aligned_cols=103 Identities=11% Similarity=0.086 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEecCCCC-hHHh-------hc------------CceEEEecCChhHHHHHHHHHHHhc
Q 025140 64 TVDGDTSKLINGHIKATGASFLEAPVSGS-KKPA-------ED------------GQLIFLAAGDKSLYNTVAPLLDIMG 123 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vdapV~g~-~~~a-------~~------------g~l~i~~gg~~~~~~~~~~ll~~~~ 123 (257)
..++++..++++.+.+.|++++++-.-.. +... .. ..+..+.-...+.++++...+...+
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~ 181 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAK 181 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccC
Confidence 57899999999999999999999844222 1111 00 0111111233333344333222112
Q ss_pred CCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 025140 124 KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD 166 (257)
Q Consensus 124 ~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld 166 (257)
...+++--.-+-..+|.-.|.-.--.+..+.|++.+++..|+.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~ 224 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFH 224 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 2223321112222333333333455567778888898888764
No 374
>PLN02727 NAD kinase
Probab=28.48 E-value=6e+02 Score=26.40 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=41.7
Q ss_pred CEEEEcCCCCH---HHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHH-HHhcCCc-eecCC
Q 025140 57 KGYVDVSTVDG---DTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSR-FYLGD 131 (257)
Q Consensus 57 ~~ivd~ST~~p---~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll-~~~~~~~-~~~G~ 131 (257)
++|||+-.-.. -...++.+.+++.|+.|++-||..+... +.+..+++..+| +.+.+.+ .||.+
T Consensus 283 KTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~ap------------t~EqVe~fa~~l~~slpkPVLvHCKS 350 (986)
T PLN02727 283 KTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAP------------SAEQVEKFASLVSDSSKKPIYLHSKE 350 (986)
T ss_pred eEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCC------------CHHHHHHHHHHHHhhcCCCEEEECCC
Confidence 78888855332 2234577778888999999999654321 345677888888 5565554 56743
No 375
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=28.10 E-value=4.5e+02 Score=23.71 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEec
Q 025140 64 TVDGDTSKLINGHIKATGASFLEAP 88 (257)
Q Consensus 64 T~~p~~~~~la~~~~~~G~~~vdap 88 (257)
..++++..++++.+.+.|++.+++-
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG 42 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAG 42 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 5788999999999999999999983
No 376
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.99 E-value=3.1e+02 Score=24.02 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=28.8
Q ss_pred cccccCCCC-CEEEEcCC-------CCHHHHHHHHHHHHHcCCcEEEe
Q 025140 48 GAASGMGPG-KGYVDVST-------VDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 48 ~~~~~l~~g-~~ivd~ST-------~~p~~~~~la~~~~~~G~~~vda 87 (257)
.+.+...++ .+.|.+|. .+++...++++.+.+.|+.|++.
T Consensus 200 avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~v 247 (327)
T cd02803 200 AVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHV 247 (327)
T ss_pred HHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 333434334 56676664 36788999999999999999985
No 377
>COG4639 Predicted kinase [General function prediction only]
Probab=27.96 E-value=72 Score=25.52 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=31.0
Q ss_pred ccCCCCC-EEEEcCCCCHHHHHHHHHHHHHcCCc----EEEecC
Q 025140 51 SGMGPGK-GYVDVSTVDGDTSKLINGHIKATGAS----FLEAPV 89 (257)
Q Consensus 51 ~~l~~g~-~ivd~ST~~p~~~~~la~~~~~~G~~----~vdapV 89 (257)
+.+..|+ +|||.++..|+.-+++-+.+...|.. ++|-|.
T Consensus 64 qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~ 107 (168)
T COG4639 64 QRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPL 107 (168)
T ss_pred HHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCH
Confidence 4456665 79999999999999999999999864 356554
No 378
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=27.14 E-value=77 Score=27.94 Aligned_cols=49 Identities=20% Similarity=0.047 Sum_probs=30.0
Q ss_pred CCHHHHHhcCCEEEEecCChH-------H--------HHHHhcCCCcccccCCCCCEEEEcCCCCHHH
Q 025140 17 PSPDEVAASCDVTFAMLADPE-------S--------AMDVACGKHGAASGMGPGKGYVDVSTVDGDT 69 (257)
Q Consensus 17 ~s~~ea~~~advvi~~l~~~~-------~--------v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~ 69 (257)
.+ .+.+++||+||+++..+. + ++++. +.+.+....+.++|..+++.+-+
T Consensus 65 ~d-~~~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~---~~i~~~~~~~~viv~~npvd~~t 128 (309)
T cd05294 65 SD-LSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYA---KQIAEFAPDTKILVVTNPVDVMT 128 (309)
T ss_pred CC-HHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHCCCeEEEEeCCchHHHH
Confidence 34 456999999999997421 1 23333 34445555667777777665544
No 379
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=27.02 E-value=2.7e+02 Score=21.79 Aligned_cols=63 Identities=17% Similarity=-0.023 Sum_probs=39.1
Q ss_pred HHhcCCEEEEecCCh------HHHHHHhcCCCcccccCCCCCEEEEcCCC----CH----HHHHHHHHHHHHcCCcEEEe
Q 025140 22 VAASCDVTFAMLADP------ESAMDVACGKHGAASGMGPGKGYVDVSTV----DG----DTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 22 a~~~advvi~~l~~~------~~v~~v~~~~~~~~~~l~~g~~ivd~ST~----~p----~~~~~la~~~~~~G~~~vda 87 (257)
-+.+.|.||+..|+. ..+++.+ +.+...-.+|+.+.-.+|. .+ +..+.+.+.++++|+.++..
T Consensus 41 ~l~~~d~ii~gspty~~g~~p~~~~~fl---~~l~~~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~ 117 (167)
T TIGR01752 41 DLNAYDKLILGTPTWGVGELQEDWEDFL---PTLEELDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGF 117 (167)
T ss_pred HHhhCCEEEEEecCCCCCcCcHHHHHHH---HHhhcCCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEce
Confidence 456889999999874 2344444 2222212356666555542 12 23578889999999988764
No 380
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=26.95 E-value=2.5e+02 Score=20.40 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 025140 113 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 177 (257)
Q Consensus 113 ~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~ 177 (257)
+.+..+.+.+|+..+|+ |-+...... ..|.-+.-.+.+.+ ...||+++|++...++.++...
T Consensus 35 ~~~~~L~~~~gG~~iyi-P~~~~~~~~-~R~~~I~~~f~G~n-~~eLA~kyglS~r~I~~Ii~~~ 96 (108)
T PF08765_consen 35 EVALKLCRYFGGQQIYI-PKCDRLLRA-LRNREIRREFNGMN-VRELARKYGLSERQIYRIIKRV 96 (108)
T ss_dssp HHHHHHHHHH-SS-------SHHHHHH-HHHHHHHHH--SS--HHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEeEEe-eCccHHHHH-HHHHHHHHHhCCCC-HHHHHHHHCcCHHHHHHHHHHH
Confidence 45677788888888888 433332222 23322233333322 4589999999999999999873
No 381
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.92 E-value=1.7e+02 Score=26.96 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=48.6
Q ss_pred chhhhhcCccccCC------HHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHH
Q 025140 5 NNAFYYSRCRYQPS------PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 78 (257)
Q Consensus 5 ~~~~~~~Ga~~~~s------~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~ 78 (257)
.+.|.+.|.++.++ +.++-.+.-+||..=.-+..+.+-+ ..+|-.|||.|--.+...+...++..
T Consensus 84 v~~L~~~Gv~~v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~---------~~rgl~iiDATCP~V~kvh~~v~~~~ 154 (387)
T PRK13371 84 NQHLREMGVRFIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLL---------NEKGCHIVDTTCPWVSKVWNTVEKHK 154 (387)
T ss_pred HHHHHhCCCEEEcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHH---------HHCCCeEEecCCccchHHHHHHHHHH
Confidence 46788999988874 4443333334444444455554443 13678899999999999999999998
Q ss_pred HcCCcE
Q 025140 79 ATGASF 84 (257)
Q Consensus 79 ~~G~~~ 84 (257)
+.|-..
T Consensus 155 ~~Gy~i 160 (387)
T PRK13371 155 KKDFTS 160 (387)
T ss_pred hCCCEE
Confidence 888654
No 382
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=26.89 E-value=4e+02 Score=25.37 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=51.1
Q ss_pred Eec--CChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025140 104 LAA--GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS 180 (257)
Q Consensus 104 ~~g--g~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~ 180 (257)
+-+ .++++++.+..+++.+++.++.+.+ +| .+.| -.....++|++.+.+.--.+++.+=.++..+.+.
T Consensus 383 ~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pG------fi~n---Ril~~~~nEA~~ll~eGvas~~dID~a~~~g~G~ 453 (503)
T TIGR02279 383 AAAAVNPDSATRKAIYYLQQAGKKVLQIADYPG------LLIL---RTVAMLANEAADAVLQGVASAQDIDTAMRLGVNY 453 (503)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEeCCccc------HHHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 444 4779999999999999999988866 56 2333 3445678999999888767888887777766443
No 383
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=26.56 E-value=3.4e+02 Score=23.90 Aligned_cols=38 Identities=11% Similarity=-0.014 Sum_probs=28.6
Q ss_pred CCCCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCC
Q 025140 53 MGPGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSG 91 (257)
Q Consensus 53 l~~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g 91 (257)
+..-.+.||... -++++. ...+++++.+..|++-|+..
T Consensus 171 ~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~~~iEeP~~~ 209 (324)
T TIGR01928 171 FPQIPLVIDANESYDLQDF-PRLKELDRYQLLYIEEPFKI 209 (324)
T ss_pred CCCCcEEEECCCCCCHHHH-HHHHHHhhCCCcEEECCCCh
Confidence 334479999965 556665 45788888999999999963
No 384
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=26.42 E-value=80 Score=28.57 Aligned_cols=73 Identities=11% Similarity=0.015 Sum_probs=54.6
Q ss_pred cchhhhhcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHH
Q 025140 4 PNNAFYYSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA 79 (257)
Q Consensus 4 ~~~~~~~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~ 79 (257)
|.+...+.|.+ .-|..|+...||.|-+-+|--.+.+.++. +.-+..+++|-.|||.|-...-....+-+.+.+
T Consensus 180 ~~~~~~a~gvq-~vsl~Eil~~ADFitlH~PLtP~T~~lin--~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 180 PMALAEAFGVQ-LVSLEEILPKADFITLHVPLTPSTEKLLN--DETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred chHHHHhccce-eeeHHHHHhhcCEEEEccCCCcchhhccC--HHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 33444555554 45788999999999999998888887774 234566899999999998877666677666654
No 385
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=26.15 E-value=3.2e+02 Score=21.35 Aligned_cols=105 Identities=11% Similarity=0.111 Sum_probs=52.8
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecC-------CCC--hHHhhcCceEEEecCChhHHHHHHHHHHH-hcCCc
Q 025140 57 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPV-------SGS--KKPAEDGQLIFLAAGDKSLYNTVAPLLDI-MGKSR 126 (257)
Q Consensus 57 ~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV-------~g~--~~~a~~g~l~i~~gg~~~~~~~~~~ll~~-~~~~~ 126 (257)
.+=.|.-..+|++++++-+.+.+.|.-..+.-. ..- |.+-..+. .++ -.+..|+++-+.+.. .|
T Consensus 26 ~Ls~D~~WmspdqAk~li~~A~~eGLl~~~~~~l~~~Fd~~~v~iP~~FkP~~-~~l--~e~~~fe~ild~ia~~~g--- 99 (144)
T PF09999_consen 26 ALSFDRKWMSPDQAKRLIDEAIEEGLLEEEGGYLVPNFDPSEVEIPLGFKPDE-EIL--QERDPFERILDYIAAKTG--- 99 (144)
T ss_pred eEeeecCCCCHHHHHHHHHHHHHCCCeeecCCEEEEecCccccccCCCCCCcH-HHH--hcccHHHHHHHHHHHhcC---
Confidence 344677799999999999988887753322211 000 00000000 011 233444444443322 22
Q ss_pred eecCCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCHHHHHH
Q 025140 127 FYLGDVGNGAAMKLVVNMIMGS--MMATFSEGLLHSEKVGLDPNVLVE 172 (257)
Q Consensus 127 ~~~G~~G~a~~~Kl~~n~~~~~--~~~~~~Ea~~la~~~Gld~~~~~~ 172 (257)
...-..+-.+|...--. ++..=.=++.+|++.|+|.+.+++
T Consensus 100 -----~~~~evv~~in~~q~~~~~~l~~e~aall~ake~Gvdv~~~~~ 142 (144)
T PF09999_consen 100 -----IEKQEVVAEINELQEELGGLLDPEAAALLYAKEKGVDVSDFAD 142 (144)
T ss_pred -----CCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhCCCHHHHhh
Confidence 22334444455432211 233333346789999999988764
No 386
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.37 E-value=1.5e+02 Score=25.64 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHH
Q 025140 67 GDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 120 (257)
Q Consensus 67 p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 120 (257)
.+.+.++.+++.++|+. +|. ....+.+.+|||...+..++.+..
T Consensus 14 ~~~~~~l~~~l~~~g~~-~~~---------~~~Dlvi~iGGDGT~L~a~~~~~~ 57 (265)
T PRK04885 14 KRVASKLKKYLKDFGFI-LDE---------KNPDIVISVGGDGTLLSAFHRYEN 57 (265)
T ss_pred HHHHHHHHHHHHHcCCc-cCC---------cCCCEEEEECCcHHHHHHHHHhcc
Confidence 34556677778788877 221 245789999999998877666543
No 387
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=25.10 E-value=1.5e+02 Score=26.22 Aligned_cols=114 Identities=14% Similarity=0.083 Sum_probs=60.3
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChH-----HHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEE
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPE-----SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 85 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~-----~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~v 85 (257)
.|....+|+.++..++|++|+-+...- ..+..+ .+++..|.-||+.=-..-+.-.++.+.++++|+++.
T Consensus 18 ~~iPi~~~~~~a~~~~~~liiGiA~~GG~lp~~w~~~i------~~Ai~~Gl~IvsGLH~~L~ddpel~~~A~~~g~~i~ 91 (301)
T PF07755_consen 18 RGIPIVASLEEAAAGADTLIIGIAPAGGRLPPSWRPVI------LEAIEAGLDIVSGLHDFLSDDPELAAAAKKNGVRII 91 (301)
T ss_dssp S--BEESSHHHHHCT-SEEEE---STTHCCHCCHHHHH------HHHHHTT-EEEE-SSS-HCCHHHHHCCHHCCT--EE
T ss_pred CCCCccCCHHHHhcCCCEEEEecCcCCCcCCHHHHHHH------HHHHHcCCCEEecChhhhccCHHHHHHHHHcCCeEe
Confidence 678889999999889999998776532 223332 344556777777444455555677888888999998
Q ss_pred Eec-------CCCChHHhhcCceEEEecCChhH-----HHHHHHHHHHhcCCceecC
Q 025140 86 EAP-------VSGSKKPAEDGQLIFLAAGDKSL-----YNTVAPLLDIMGKSRFYLG 130 (257)
Q Consensus 86 dap-------V~g~~~~a~~g~l~i~~gg~~~~-----~~~~~~ll~~~~~~~~~~G 130 (257)
|.- +..+...-..+.-..++|.|-.+ --.+..-++.-|-+.-+++
T Consensus 92 DvR~p~~~~~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fva 148 (301)
T PF07755_consen 92 DVRKPPKDLPVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVA 148 (301)
T ss_dssp ETTS--SS-----SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eccCCCcccccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEe
Confidence 873 33333333345546666655443 2234455555566655553
No 388
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=24.96 E-value=1.3e+02 Score=23.48 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=46.2
Q ss_pred cCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcE
Q 025140 11 SRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 84 (257)
Q Consensus 11 ~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~ 84 (257)
.|-+...|++|.-..-|+|-+..+. +.+-++. +.+++ .....+|...+....+. .+.+++.|..+
T Consensus 59 LG~k~y~sL~dIpe~IDiVdvFR~~-e~~~~i~---~eal~-~~~kv~W~QlGi~n~ea----~~~~~~aG~~v 123 (140)
T COG1832 59 LGEKVYPSLADIPEPIDIVDVFRRS-EAAPEVA---REALE-KGAKVVWLQLGIRNEEA----AEKARDAGLDV 123 (140)
T ss_pred cCchhhhcHHhCCCCCcEEEEecCh-hhhHHHH---HHHHh-hCCCeEEEecCcCCHHH----HHHHHHhCcHH
Confidence 5778899999999999999988875 4444454 33433 23678999999998873 34455566543
No 389
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=24.95 E-value=81 Score=28.18 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=25.8
Q ss_pred HHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCC
Q 025140 21 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 65 (257)
Q Consensus 21 ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~ 65 (257)
+...++|+||+|+|.....+-+ ..+ ...|..+||.|..
T Consensus 69 ~~~~~~DvVf~a~p~~~s~~~~----~~~---~~~G~~VIDlsg~ 106 (341)
T TIGR00978 69 VASKDVDIVFSALPSEVAEEVE----PKL---AEAGKPVFSNASN 106 (341)
T ss_pred HHhccCCEEEEeCCHHHHHHHH----HHH---HHCCCEEEECChh
Confidence 4557899999999987554322 112 2357889998854
No 390
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.91 E-value=2e+02 Score=19.95 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=29.9
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEec
Q 025140 55 PGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 88 (257)
Q Consensus 55 ~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdap 88 (257)
+.+.+|-.+..+|.+...+...++.+++.|+..+
T Consensus 27 kaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 27 SVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 4568899999999999999999999999988776
No 391
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=24.86 E-value=4.9e+02 Score=23.69 Aligned_cols=102 Identities=10% Similarity=0.038 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCchHHHHHHHHHH
Q 025140 65 VDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 144 (257)
Q Consensus 65 ~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~ 144 (257)
.+++.+.++++.+.+.|+.||+.- ++......-...-+..++..-++.++.+-+.++..++..|.+-+...+. ..
T Consensus 249 ~~~e~~~~~~~~l~~~gvD~l~vs--~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~---~~ 323 (382)
T cd02931 249 RDLEEGLKAAKILEEAGYDALDVD--AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELAS---EA 323 (382)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeC--CCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHH---HH
Confidence 467889999999999999999853 3321100000000111111112334444455666677778865443221 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025140 145 IMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 175 (257)
Q Consensus 145 ~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~ 175 (257)
+ -...+....+++..=.||+.+.++..
T Consensus 324 l----~~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 324 I----NEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred H----HcCCCCeeeechHhHhCccHHHHHHc
Confidence 1 11224455556655566666555544
No 392
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=24.72 E-value=1.3e+02 Score=24.37 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=32.5
Q ss_pred hcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Q 025140 24 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 82 (257)
Q Consensus 24 ~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~ 82 (257)
...|.||+.... .....++ +.+...+.+|..++ ..+...++.+++.+.++++|.
T Consensus 110 ~~~D~V~~~~~~-~~~~~~l---~~~~~~LkpgG~lv-~~~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 110 EKFDRIFIGGGS-EKLKEII---SASWEIIKKGGRIV-IDAILLETVNNALSALENIGF 163 (198)
T ss_pred CCCCEEEECCCc-ccHHHHH---HHHHHHcCCCcEEE-EEeecHHHHHHHHHHHHHcCC
Confidence 347899885532 2233344 33334455655444 245577888888888888885
No 393
>PRK00208 thiG thiazole synthase; Reviewed
Probab=24.62 E-value=4.5e+02 Score=22.58 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=42.5
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCCc
Q 025140 54 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVG 133 (257)
Q Consensus 54 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~G 133 (257)
.+|-+++=-.+-+|..++++++ .|+.+| |..|.|-+...|- -+. +.++.+.+.....++.-|.++
T Consensus 121 ~~Gf~vlpyc~~d~~~ak~l~~----~G~~~v--mPlg~pIGsg~gi------~~~---~~i~~i~e~~~vpVIveaGI~ 185 (250)
T PRK00208 121 KEGFVVLPYCTDDPVLAKRLEE----AGCAAV--MPLGAPIGSGLGL------LNP---YNLRIIIEQADVPVIVDAGIG 185 (250)
T ss_pred HCCCEEEEEeCCCHHHHHHHHH----cCCCEe--CCCCcCCCCCCCC------CCH---HHHHHHHHhcCCeEEEeCCCC
Confidence 4677777567777877666654 489988 6666665532211 022 234444444333344345577
Q ss_pred hHHHHHHHHH
Q 025140 134 NGAAMKLVVN 143 (257)
Q Consensus 134 ~a~~~Kl~~n 143 (257)
+++-++.+..
T Consensus 186 tpeda~~Ame 195 (250)
T PRK00208 186 TPSDAAQAME 195 (250)
T ss_pred CHHHHHHHHH
Confidence 7776665443
No 394
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.50 E-value=1e+02 Score=20.08 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=27.2
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEE
Q 025140 54 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 86 (257)
Q Consensus 54 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vd 86 (257)
....+.|..-|-.++...++.+.+++.|..+.|
T Consensus 36 ~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~d 68 (68)
T cd04885 36 DEARVLVGIQVPDREDLAELKERLEALGYPYVD 68 (68)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHHHHcCCCccC
Confidence 345677778888999999999999999987654
No 395
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=24.36 E-value=4e+02 Score=21.85 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=15.2
Q ss_pred ceEEEecCChhHHHHHHHHHHHh
Q 025140 100 QLIFLAAGDKSLYNTVAPLLDIM 122 (257)
Q Consensus 100 ~l~i~~gg~~~~~~~~~~ll~~~ 122 (257)
...++.+||.-.|.....+++.+
T Consensus 73 ~V~~L~~GDP~~~~~~~~l~~~~ 95 (229)
T TIGR01465 73 LVVRLHTGDPSIYGAIAEQMQLL 95 (229)
T ss_pred eEEEEeCcCccccccHHHHHHHH
Confidence 35667788887777666655544
No 396
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=24.27 E-value=70 Score=28.16 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=16.1
Q ss_pred ccCCHHHHHhcCCEEEEecCC
Q 025140 15 YQPSPDEVAASCDVTFAMLAD 35 (257)
Q Consensus 15 ~~~s~~ea~~~advvi~~l~~ 35 (257)
...+..+ +++||+||++++.
T Consensus 60 ~t~d~~~-~~~aDiVIitag~ 79 (305)
T TIGR01763 60 GTNNYAD-TANSDIVVITAGL 79 (305)
T ss_pred ecCCHHH-hCCCCEEEEcCCC
Confidence 4567766 7899999999984
No 397
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=24.17 E-value=37 Score=30.85 Aligned_cols=15 Identities=7% Similarity=0.240 Sum_probs=8.5
Q ss_pred HHHHHhcCCEEEEec
Q 025140 19 PDEVAASCDVTFAML 33 (257)
Q Consensus 19 ~~ea~~~advvi~~l 33 (257)
+.+.++++|+||.|+
T Consensus 224 l~~~l~~aDvVI~a~ 238 (370)
T TIGR00518 224 IEDAVKRADLLIGAV 238 (370)
T ss_pred HHHHHccCCEEEEcc
Confidence 344555666666655
No 398
>PF11113 Phage_head_chap: Head assembly gene product; InterPro: IPR021049 This head assembly protein is also refereed to as gene product 40 (Gp40). A specific gp20-gp40 membrane insertion structure constitutes the T4 prohead assembly initiation complex [].
Probab=24.10 E-value=92 Score=20.16 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHH
Q 025140 54 GPGKGYVDVSTVDGDTSKLINGHIKA 79 (257)
Q Consensus 54 ~~g~~ivd~ST~~p~~~~~la~~~~~ 79 (257)
..|++.+|.||.+++...+++..+.+
T Consensus 25 ~~G~l~vdfsT~~e~~k~el~phVe~ 50 (56)
T PF11113_consen 25 DDGKLKVDFSTPSEDRKEELAPHVEK 50 (56)
T ss_pred cCCeEEEEEeCCCcchhhHHHHHHHH
Confidence 48999999999999888888776654
No 399
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.04 E-value=1.4e+02 Score=16.61 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhh
Q 025140 154 SEGLLHSEKVGLDPNVLVEVVSQ 176 (257)
Q Consensus 154 ~Ea~~la~~~Gld~~~~~~~l~~ 176 (257)
.+.+.-|...|++.+.+.+.+..
T Consensus 6 ~~Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 6 VELIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Confidence 34556688999999999888754
No 400
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=23.89 E-value=5e+02 Score=24.66 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=47.1
Q ss_pred CChhHHHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025140 107 GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS 180 (257)
Q Consensus 107 g~~~~~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~~~ 180 (257)
.++++++.+..+++.+++.++.+.+ +| .+.| -.....++|++.+.+.-=.+++++=.++..+.+.
T Consensus 389 Ts~e~~~~~~~~~~~~gk~pi~v~d~~G------fi~n---Rll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~ 454 (507)
T PRK08268 389 TSPAARDAAHALFQQDGKAVSVIRDSPG------FVAQ---RTVAMIVNEAADIAQQGIASPADIDLAMRLGLNY 454 (507)
T ss_pred CCHHHHHHHHHHHHHcCCeeEEeCCCcc------HHHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence 4779999999999999999888866 55 2333 3345567899888866545788877776665443
No 401
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=23.84 E-value=5.7e+02 Score=24.10 Aligned_cols=98 Identities=7% Similarity=-0.017 Sum_probs=51.9
Q ss_pred CHHHHHh---cCCEEEEecCCh-----HHHHHHhcCCCcccccCCCCCEEEEcCCC--CHHHHHHHHHHHHHcCCcEEEe
Q 025140 18 SPDEVAA---SCDVTFAMLADP-----ESAMDVACGKHGAASGMGPGKGYVDVSTV--DGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 18 s~~ea~~---~advvi~~l~~~-----~~v~~v~~~~~~~~~~l~~g~~ivd~ST~--~p~~~~~la~~~~~~G~~~vda 87 (257)
++.+++. ++|.|++-.|+. ..+...+ +.+...-.+|+.+.-.+|- +.+..+.+.++++..|...++
T Consensus 294 ~~~~i~~~~~~ad~vilGspT~~~~~~p~~~~fl---~~l~~~~l~gK~~~vFGSygw~g~a~~~~~~~l~~~g~~~~~- 369 (479)
T PRK05452 294 DKNEILTNVFRSKGVLVGSSTMNNVMMPKIAGLL---EEITGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSL- 369 (479)
T ss_pred CHHHHHhHHhhCCEEEEECCccCCcchHHHHHHH---HHhhccCcCCCEEEEEECCCcCcHHHHHHHHHHHHCCCEEec-
Confidence 4555554 478887777762 2344454 2222222356655444432 235566677777777776642
Q ss_pred cCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhcCCceecCCC
Q 025140 88 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV 132 (257)
Q Consensus 88 pV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~~G~~ 132 (257)
.+.+-..-+++.+++++.+-+.+...+. .++.
T Consensus 370 ------------~l~~~~~P~ee~~~~~~~~g~~la~~~~-~~~~ 401 (479)
T PRK05452 370 ------------SLKAKWRPDQDALELCREHGREIARQWA-LAPL 401 (479)
T ss_pred ------------cEEEEecCCHHHHHHHHHHHHHHHHHHh-hCCc
Confidence 2233333345666666666666654444 4443
No 402
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=23.66 E-value=1.5e+02 Score=23.26 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=8.7
Q ss_pred cCCEEEEecCC
Q 025140 25 SCDVTFAMLAD 35 (257)
Q Consensus 25 ~advvi~~l~~ 35 (257)
..|+||+++..
T Consensus 63 ~pd~vii~~G~ 73 (199)
T cd01838 63 QPDLVTIFFGA 73 (199)
T ss_pred CceEEEEEecC
Confidence 58999998843
No 403
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=23.58 E-value=74 Score=29.00 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=24.4
Q ss_pred HHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCC--CEEEEcCC
Q 025140 21 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG--KGYVDVST 64 (257)
Q Consensus 21 ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g--~~ivd~ST 64 (257)
+..+++|++|+|+|+..+ +++. ..+. ..| .+|||.|.
T Consensus 61 ~~~~~~Divf~a~~~~~s-~~~~---~~~~---~aG~~~~VID~Ss 99 (369)
T PRK06598 61 DALKKLDIIITCQGGDYT-NEVY---PKLR---AAGWQGYWIDAAS 99 (369)
T ss_pred hHhcCCCEEEECCCHHHH-HHHH---HHHH---hCCCCeEEEECCh
Confidence 345789999999997643 3343 2222 356 57999984
No 404
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=23.32 E-value=1.2e+02 Score=26.85 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=34.5
Q ss_pred cCccc-cCCHHHHHh-----cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 11 SRCRY-QPSPDEVAA-----SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 11 ~Ga~~-~~s~~ea~~-----~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
.|... .++..++++ +.|+||.+.++....+... .....|+.+||.|...
T Consensus 50 ~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~-------~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 50 LGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHVRHAA-------KLREAGIRAIDLTPAA 104 (302)
T ss_pred cCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHHHHHH-------HHHHcCCeEEECCccc
Confidence 47654 578888885 4788999998866544332 2245789999998655
No 405
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=23.07 E-value=1.7e+02 Score=22.20 Aligned_cols=67 Identities=7% Similarity=-0.076 Sum_probs=41.2
Q ss_pred HHHHhcCCEEEEecCCh-----HHHHHHhcCCCccc---ccCCCCCEEEEcCC-----CCHHHHHHHHHHHHHcCCcEEE
Q 025140 20 DEVAASCDVTFAMLADP-----ESAMDVACGKHGAA---SGMGPGKGYVDVST-----VDGDTSKLINGHIKATGASFLE 86 (257)
Q Consensus 20 ~ea~~~advvi~~l~~~-----~~v~~v~~~~~~~~---~~l~~g~~ivd~ST-----~~p~~~~~la~~~~~~G~~~vd 86 (257)
.+.+.+||.+|+..|.. ..++..+ +-+. .....+|.+.-.++ ..-.....+...+...|..++.
T Consensus 65 ~~~l~~aD~iI~~sP~y~~~~s~~lK~~l---D~~~~~~~~~~~~K~~~~i~~~g~~~g~~~~~~~l~~~~~~~~~~~~~ 141 (152)
T PF03358_consen 65 YDKLKEADGIIFASPVYNGSVSGQLKNFL---DRLSCWFRRALRGKPVAIIAVGGGRRGGLRALEQLRQILDYLGMIVVP 141 (152)
T ss_dssp HHHHHHSSEEEEEEEEBTTBE-HHHHHHH---HTHHHTHTTTTTTSEEEEEEEESSSSTTHHHHHHHHHHHHHTTBEEEC
T ss_pred HhceecCCeEEEeecEEcCcCChhhhHHH---HHhccccccccCCCEEEEEEEecCCcHHHHHHHHHHHHHHHCCCEEcC
Confidence 45667899999998874 4566666 3332 33445665544432 2445555666777777887776
Q ss_pred ecC
Q 025140 87 APV 89 (257)
Q Consensus 87 apV 89 (257)
..+
T Consensus 142 ~~~ 144 (152)
T PF03358_consen 142 SGV 144 (152)
T ss_dssp CSE
T ss_pred CcE
Confidence 543
No 406
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=23.03 E-value=1.4e+02 Score=25.37 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=34.2
Q ss_pred ccccCCHHHHHhcCCEEEEecCCh---------------HHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHH
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADP---------------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI 77 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~---------------~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~ 77 (257)
.+..+++.+++++||+||++..-+ +..+++. +.+.+. .+..++|.. |.+.+..-.+..+.
T Consensus 58 i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~---~~i~~~-~p~a~~i~~-tNP~d~~t~~~~~~ 132 (263)
T cd00650 58 VSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIG---DNIEKY-SPDAWIIVV-SNPVDIITYLVWRY 132 (263)
T ss_pred EEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHH---HHHHHH-CCCeEEEEe-cCcHHHHHHHHHHH
Confidence 345677889999999999955221 1234444 333333 355666666 45555554444433
No 407
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=22.91 E-value=5.8e+02 Score=23.17 Aligned_cols=91 Identities=10% Similarity=0.087 Sum_probs=53.1
Q ss_pred CHHHHH---hcCCEEEEecCChH-----HHHHHhcCCCcccccCCCCCEEEEcCC--CCHHHHHHHHHHHHHcCCcEEEe
Q 025140 18 SPDEVA---ASCDVTFAMLADPE-----SAMDVACGKHGAASGMGPGKGYVDVST--VDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 18 s~~ea~---~~advvi~~l~~~~-----~v~~v~~~~~~~~~~l~~g~~ivd~ST--~~p~~~~~la~~~~~~G~~~vda 87 (257)
++.+++ .++|.+|+..|+.. .+..++ +.+.....+|+++.-..| -+.+..+.+.+.++..|...++-
T Consensus 290 ~~~~i~~~~~~~d~ii~GspT~~~~~~~~~~~~l---~~l~~~~~~~K~~a~FGsygw~g~a~~~~~~~l~~~g~~~v~~ 366 (394)
T PRK11921 290 DKNDIITEVFKSKAILVGSSTINRGILSSTAAIL---EEIKGLGFKNKKAAAFGSYGWSGESVKIITERLKKAGFEIVND 366 (394)
T ss_pred CHHHHHHHHHhCCEEEEECCCcCccccHHHHHHH---HHhhccCcCCCEEEEEecCCCccHHHHHHHHHHHHCCCEEccC
Confidence 445543 36999999998842 244444 222222235766544443 23567777888898889888765
Q ss_pred cCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhc
Q 025140 88 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG 123 (257)
Q Consensus 88 pV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~ 123 (257)
|+ .+-..-+++.+++++.+-+.+.
T Consensus 367 ~~------------~~~~~p~~~~~~~~~~~g~~la 390 (394)
T PRK11921 367 GI------------RELWNPDDEALDRCRSFGENFA 390 (394)
T ss_pred cE------------EEEeCCCHHHHHHHHHHHHHHH
Confidence 43 2222234466677776655554
No 408
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.80 E-value=3.1e+02 Score=21.40 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCcEEEecCCCChHHhhc------Cce---EEEecCChhHHHHHHHHHHHhcCCce--ecCC-CchH
Q 025140 72 LINGHIKATGASFLEAPVSGSKKPAED------GQL---IFLAAGDKSLYNTVAPLLDIMGKSRF--YLGD-VGNG 135 (257)
Q Consensus 72 ~la~~~~~~G~~~vdapV~g~~~~a~~------g~l---~i~~gg~~~~~~~~~~ll~~~~~~~~--~~G~-~G~a 135 (257)
-++..+++.|...+..+..-+|..+.. ... +.+.|+-.+.+..+.+.|+..|.+-+ ++|+ +...
T Consensus 31 via~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~ 106 (143)
T COG2185 31 VIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPG 106 (143)
T ss_pred HHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCch
Confidence 356677788888888888888876532 121 22334455666777777777776533 4565 4433
No 409
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=22.57 E-value=27 Score=27.67 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=25.8
Q ss_pred CHHHHHhcCCEEEEec--CChHHHHHHhcCCCcccccCCCCCEEEEcC
Q 025140 18 SPDEVAASCDVTFAML--ADPESAMDVACGKHGAASGMGPGKGYVDVS 63 (257)
Q Consensus 18 s~~ea~~~advvi~~l--~~~~~v~~v~~~~~~~~~~l~~g~~ivd~S 63 (257)
...+.++.+|+||++. ++...-+ ++. +..++.+.++.+|+|.|
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~~~P~-lvt--~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGKRAPR-LVT--EEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTSS----SBE--HHHHHTSSTTEEEEETT
T ss_pred HHHHHHhhCcEEeeecccCCCCCCE-EEE--hHHhhccCCCceEEEEE
Confidence 4567888999999643 3323221 221 23345678999999997
No 410
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=22.40 E-value=1.2e+02 Score=27.46 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHH
Q 025140 206 QKDLRLALGLAESVSQSTPIA 226 (257)
Q Consensus 206 ~KD~~~~~~~a~~~g~~~p~~ 226 (257)
.=|+-.+.++|.+.|+.-++.
T Consensus 304 viDlvR~~klA~drG~~G~v~ 324 (351)
T TIGR03450 304 IIDAVRAAKIAKDRGIGGPVI 324 (351)
T ss_pred HHHHHHHHHHHHhcCCCCccc
Confidence 345555556666666554433
No 411
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=22.38 E-value=3e+02 Score=22.21 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCceecCCCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025140 115 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM--MATFSEGLLHSEKVGLDPNVLVEVVSQ 176 (257)
Q Consensus 115 ~~~ll~~~~~~~~~~G~~G~a~~~Kl~~n~~~~~~--~~~~~Ea~~la~~~Gld~~~~~~~l~~ 176 (257)
++.-|...|+ .-|+|+-..| .+.|+++.... =.++.|++.=.++.|++-+++...+..
T Consensus 24 iqgkLrmWGR-wsyiggG~~g---~mfnqLl~s~kitKtaI~~aLr~mkKsGi~k~EL~~~~~e 83 (176)
T PF06576_consen 24 IQGKLRMWGR-WSYIGGGKGG---NMFNQLLASKKITKTAINEALRRMKKSGISKPELEAFLRE 83 (176)
T ss_pred HHHHHHhhhe-eecccCCchh---hHHHHHHhcccccHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 5667778887 4577632222 56677766443 378999999999999999888777654
No 412
>PF02317 Octopine_DH: NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain; InterPro: IPR003421 This group of enzymes act on the CH-NH substrate bond using NAD(+) or NADP(+) as an acceptor. This domain is found primarily in octopine dehydrogenase (1.5.1.11 from EC), nopaline dehydrogenase (1.5.1.19 from EC), and lysopine dehydrogenase (1.5.1.16 from EC). NADPH is the preferred cofactor, but NADH is also used. Octopine dehydrogenase is involved in the reductive condensation of arginine and pyruvic acid to D-octopine []. Opine dehydrogenases can be found in both bacteria and marine cephalopods. In bacteria, some of these opine dehydrogenases are involved in crown gall tumours that are produced by Agrobacterium spp., and which encode for the opine dehydrogenases on a Ti-plasmid. These bacteria can transfer a portion of this plasmid (T-DNA) to a susceptible plant cell; the T-DNA then integrates into the plant nuclear genome, where its genes can be expressed. Some of these genes direct the synthesis and secretion of unusual amino acid and sugar derivatives called opines - these opines are used as a carbon and sometimes a nitrogen source by the infecting bacteria. Opine dehydrogenases are also found in the marine invertebrate cephalopods (octopuses, squid, and cuttlefish). For example in marine cephalopods, octopine dehydrogenase activity in mantle muscle is significantly correlated with a species' ability to buffer the acidic end products of anaerobic metabolism, with activity declining strongly with a species' habitat depth [].; GO: 0016491 oxidoreductase activity, 0050662 coenzyme binding, 0055114 oxidation-reduction process; PDB: 3IQD_B 3C7D_B 3C7A_A 3C7C_B 1BG6_A.
Probab=22.35 E-value=1.3e+02 Score=23.44 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 025140 209 LRLALGLAESVSQSTPIAAAANELYKVA 236 (257)
Q Consensus 209 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a 236 (257)
+-.+.++++..|+++|.++......+..
T Consensus 122 L~~~~~la~~~GV~tP~id~~I~~a~~~ 149 (152)
T PF02317_consen 122 LVPLASLAELLGVPTPVIDSIITWASAI 149 (152)
T ss_dssp HHHHHHHHHHCT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4566789999999999999998887654
No 413
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=22.17 E-value=4.5e+02 Score=21.64 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=31.8
Q ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCC
Q 025140 55 PGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSG 91 (257)
Q Consensus 55 ~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g 91 (257)
.-.+.+|... -+++++.++.+.+.+.++.|++-|+.-
T Consensus 94 ~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~~ 131 (229)
T cd00308 94 DARLAVDANGAWTPKEAIRLIRALEKYGLAWIEEPCAP 131 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhcCCCeEECCCCc
Confidence 3468899975 678999999999999999999999954
No 414
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=22.07 E-value=2.1e+02 Score=20.39 Aligned_cols=32 Identities=6% Similarity=0.167 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 025140 147 GSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA 178 (257)
Q Consensus 147 ~~~~~~~~Ea~~la~~~Gld~~~~~~~l~~~~ 178 (257)
.+++.+++-.+.++-+.|++++.+.+-|....
T Consensus 37 ~~~~~ai~rliS~~Lr~G~~~~~ii~~L~gi~ 68 (95)
T PF12637_consen 37 SGNLEAIARLISLALRSGVPPEEIIDQLRGIR 68 (95)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC
Confidence 44566778888889999999999999998754
No 415
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=22.03 E-value=3.9e+02 Score=22.89 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=43.5
Q ss_pred hcCccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC---HHHHHHHHHHHHHcCCcEEE
Q 025140 10 YSRCRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD---GDTSKLINGHIKATGASFLE 86 (257)
Q Consensus 10 ~~Ga~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~---p~~~~~la~~~~~~G~~~vd 86 (257)
..+...+.++.|.+++.|+++=|-+ ++++++.. . +.|..|.-+|-+|+.. |+.-.++-+.+ +.|..++-
T Consensus 45 ~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~---~---~~L~~g~d~iV~SVGALad~~l~erl~~la-k~~~~rv~ 116 (255)
T COG1712 45 SVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYV---P---KILKAGIDVIVMSVGALADEGLRERLRELA-KCGGARVY 116 (255)
T ss_pred hcCCCccccHHHHhhccceeeeeCC-HHHHHHHh---H---HHHhcCCCEEEEechhccChHHHHHHHHHH-hcCCcEEE
Confidence 3455666889999999999987755 68887765 2 3355666666677643 34433343333 34444444
Q ss_pred ec
Q 025140 87 AP 88 (257)
Q Consensus 87 ap 88 (257)
.|
T Consensus 117 ~p 118 (255)
T COG1712 117 LP 118 (255)
T ss_pred ec
Confidence 43
No 416
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=21.91 E-value=4.1e+02 Score=22.24 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-----------HHHHHHHHhhcCCCchhhhccccccccCCCCCCC-------
Q 025140 139 KLVVNMIMGSMMATFSEGLLHSEKVGLD-----------PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF------- 200 (257)
Q Consensus 139 Kl~~n~~~~~~~~~~~Ea~~la~~~Gld-----------~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f------- 200 (257)
|.+.|+-+...-..+.|-..+|..+|.- .+++.++....-. .......-.++|+.+|
T Consensus 4 ~~aanln~lft~~~l~~r~~~a~~~gf~~vev~~p~~e~a~~~~~~~~~~~~-----~~~~~~a~~~~~d~~~~G~~svp 78 (264)
T KOG4518|consen 4 RVAANLNMLFTNLPLLQRYGAAASAGFKLVEVSIPYTEPAEKLREAADEYHL-----KHTLINAPPGNWDDGFRGLASVP 78 (264)
T ss_pred hhhhhhhhHhhccHHHHHHHHHHhCCceEEEecCCCCChHHHHHHhhhcchh-----hhhhccCCCCChhhhccCcccCC
Confidence 4454543222225678888888887753 2344444333211 1111112234554332
Q ss_pred -chhhHHHHHHHHHHHHHhcCCCc
Q 025140 201 -PLKHQQKDLRLALGLAESVSQST 223 (257)
Q Consensus 201 -~~~~~~KD~~~~~~~a~~~g~~~ 223 (257)
+=+.+.|.++.+++.|+..|++-
T Consensus 79 g~~k~FR~~Ld~ai~yAkalgC~r 102 (264)
T KOG4518|consen 79 GAKKEFRKSLDTAIEYAKALGCCR 102 (264)
T ss_pred chHHHHHHHHHHHHHHHHHhCCce
Confidence 12467888999999999988763
No 417
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=21.63 E-value=2.8e+02 Score=21.28 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=55.1
Q ss_pred hhhcCccccCCHHHHHh----cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCc
Q 025140 8 FYYSRCRYQPSPDEVAA----SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 83 (257)
Q Consensus 8 ~~~~Ga~~~~s~~ea~~----~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~ 83 (257)
+.+.|-+.-..+.+--+ -.|-|+++|-..+..+++.. +++...-.+..++|-+|-.+-+.+.++-..+.+.|++
T Consensus 21 y~alGfk~Npq~sde~a~~mi~~~ni~vMLL~~~~fq~F~~--~~i~dt~~s~evli~ls~~s~eevd~~v~ka~eaGGk 98 (133)
T COG3607 21 YTALGFKFNPQFSDEDAACMIISDNIFVMLLEEARFQTFTK--RQIADTTKSREVLISLSAGSREEVDELVDKALEAGGK 98 (133)
T ss_pred HHHhCcccCCCcccccceeEEEeccEEEEEeccHHhhhhcc--cccccccCCceEEEEeccCcHHHHHHHHHHHHHcCCC
Confidence 34456655444443322 35778889988888877763 4566666677899999999999999999999888877
Q ss_pred EEE
Q 025140 84 FLE 86 (257)
Q Consensus 84 ~vd 86 (257)
..+
T Consensus 99 ~~~ 101 (133)
T COG3607 99 PAN 101 (133)
T ss_pred CCC
Confidence 543
No 418
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=21.55 E-value=81 Score=27.47 Aligned_cols=62 Identities=13% Similarity=-0.010 Sum_probs=34.1
Q ss_pred HHHhcCCEEEEecCChHH--HHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEe
Q 025140 21 EVAASCDVTFAMLADPES--AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 87 (257)
Q Consensus 21 ea~~~advvi~~l~~~~~--v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vda 87 (257)
+.++.+|+||-|.|-.-. ...... . -...+.++.+++|+--.+++| .+.+.++++|++.+|+
T Consensus 195 ~~~~~~DilINaTp~Gm~~~~~~~~~--~-~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~G 258 (289)
T PRK12548 195 AEIASSDILVNATLVGMKPNDGETNI--K-DTSVFRKDLVVADTVYNPKKT--KLLEDAEAAGCKTVGG 258 (289)
T ss_pred hhhccCCEEEEeCCCCCCCCCCCCCC--C-cHHhcCCCCEEEEecCCCCCC--HHHHHHHHCCCeeeCc
Confidence 345567888877763211 000000 0 012345677888888877665 5566677777765543
No 419
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=21.54 E-value=2e+02 Score=25.17 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=14.3
Q ss_pred HHHHhcCCEEEEecCCh
Q 025140 20 DEVAASCDVTFAMLADP 36 (257)
Q Consensus 20 ~ea~~~advvi~~l~~~ 36 (257)
-+.+++||+||++...+
T Consensus 61 ~~~l~~aDiVIitag~p 77 (300)
T cd00300 61 YADAADADIVVITAGAP 77 (300)
T ss_pred HHHhCCCCEEEEcCCCC
Confidence 57889999999998754
No 420
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=21.38 E-value=2.5e+02 Score=18.81 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=25.3
Q ss_pred EecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHH
Q 025140 31 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA 79 (257)
Q Consensus 31 ~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~ 79 (257)
.-..+.++++++. +.+. ....+++|++....+.++++...+..
T Consensus 4 ~~p~~~~D~~~i~---~~l~---~g~~Vivnl~~l~~~~~~Ri~Dfl~G 46 (73)
T PF04472_consen 4 FEPKSFEDAREIV---DALR---EGKIVIVNLENLDDEEAQRILDFLSG 46 (73)
T ss_dssp EE-SSGGGHHHHH---HHHH---TT--EEEE-TTS-HHHHHHHHHHHHH
T ss_pred EeeCCHHHHHHHH---HHHH---cCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 3344455555554 2222 23458999999999999998888864
No 421
>PRK09620 hypothetical protein; Provisional
Probab=21.37 E-value=3e+02 Score=23.15 Aligned_cols=74 Identities=9% Similarity=0.114 Sum_probs=44.1
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHHcCC--cEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHHHhc-CCceec
Q 025140 54 GPGKGYVDVSTVDGDTSKLINGHIKATGA--SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG-KSRFYL 129 (257)
Q Consensus 54 ~~g~~ivd~ST~~p~~~~~la~~~~~~G~--~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~-~~~~~~ 129 (257)
.+-+.|=|.||..-.. .+++++.++|. .++|.|..+.+.....+.....+-++.+..+.++.+++... .-++|+
T Consensus 18 D~VR~itN~SSGfiGs--~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~~~~~~~~~D~VIH~ 94 (229)
T PRK09620 18 DQVRGHTNMAKGTIGR--IIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMKSIITHEKVDAVIMA 94 (229)
T ss_pred CCeeEecCCCcCHHHH--HHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHHHHhcccCCCEEEEC
Confidence 3445555777777664 78888888885 56799887554432222333445566666667777765433 224554
No 422
>PRK15063 isocitrate lyase; Provisional
Probab=21.37 E-value=2.4e+02 Score=26.32 Aligned_cols=65 Identities=23% Similarity=0.283 Sum_probs=43.0
Q ss_pred cCCEEEEe--cCChHHHHHHhcCCCcccccCCCCCEEE-EcCC-------CCHHHHHHHHHHHHHcCCcEEEecCCCCh
Q 025140 25 SCDVTFAM--LADPESAMDVACGKHGAASGMGPGKGYV-DVST-------VDGDTSKLINGHIKATGASFLEAPVSGSK 93 (257)
Q Consensus 25 ~advvi~~--l~~~~~v~~v~~~~~~~~~~l~~g~~iv-d~ST-------~~p~~~~~la~~~~~~G~~~vdapV~g~~ 93 (257)
.||.||+- .||.+..+.+. +++-.-. |++++. ++|. .++++.+...+.+.+.|..++=-|+.+--
T Consensus 277 GAD~iw~Et~~~d~ee~~~fa---~~v~~~~-P~~~layn~sPsfnW~~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~h 351 (428)
T PRK15063 277 YADLIWCETSTPDLEEARRFA---EAIHAKF-PGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFH 351 (428)
T ss_pred CCCEEEeCCCCCCHHHHHHHH---HhhcccC-ccceeecCCCCCcccccccCHHHHHHHHHHHHHcCceEEEechHHHH
Confidence 68999985 78888888887 3332211 344333 3332 25677788888898899888777765543
No 423
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=21.08 E-value=2.7e+02 Score=23.82 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEEecCChhHHHHHHHHHH
Q 025140 63 STVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 120 (257)
Q Consensus 63 ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 120 (257)
++.+|...+.+..+.++.|.. ..+...+.+.+|||...+..++.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Dlvi~iGGDGTlL~a~~~~~~ 47 (246)
T PRK04761 1 ASPTPEAQAALEELVKRYGDV-----------PIEEADVIVALGGDGFMLQTLHRYMN 47 (246)
T ss_pred CCCCHHHHHHHHHHHHHhCCC-----------CcccCCEEEEECCCHHHHHHHHHhcC
Confidence 355677766666667777763 22345789999999998877766543
No 424
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.05 E-value=5.6e+02 Score=22.70 Aligned_cols=66 Identities=6% Similarity=0.003 Sum_probs=40.6
Q ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHHcCCcEEEecCCCCh-----HHhhcCceEEEecCChhHHHHHHHHHHH
Q 025140 55 PGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVSGSK-----KPAEDGQLIFLAAGDKSLYNTVAPLLDI 121 (257)
Q Consensus 55 ~g~~ivd~ST-~~p~~~~~la~~~~~~G~~~vdapV~g~~-----~~a~~g~l~i~~gg~~~~~~~~~~ll~~ 121 (257)
.-++.+|... -++++++ ..+.+++.++.|++-|+.-.- .-.+.-..+|+.+-.......++++++.
T Consensus 178 ~~~l~lDaN~~~~~~~a~-~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~ 249 (354)
T cd03317 178 DIPLMADANSAYTLADIP-LLKRLDEYGLLMIEQPLAADDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL 249 (354)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHhhcCCccEEECCCChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc
Confidence 4479999964 5666765 678888889999999996432 1112222345444333444556666654
No 425
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=21.00 E-value=2.3e+02 Score=24.53 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=40.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHh---hcCceEEEecCChhHH
Q 025140 58 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA---EDGQLIFLAAGDKSLY 112 (257)
Q Consensus 58 ~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a---~~g~l~i~~gg~~~~~ 112 (257)
=||-+|..+|++..++-.-++-+|...--+..++|.+.. ..=...++++.+++..
T Consensus 38 EVVllSRNspdTGlRv~nSI~hygL~ItR~~ft~G~~~~~Yl~af~v~LFLSan~~DV 95 (264)
T PF06189_consen 38 EVVLLSRNSPDTGLRVFNSIRHYGLDITRAAFTGGESPYPYLKAFNVDLFLSANEDDV 95 (264)
T ss_pred EEEEEecCCHHHHHHHHHhHHHhCCcceeeeecCCCCHHHHHHHhCCceEeeCCHHHH
Confidence 478899999999999999999999876666666664433 2223468888887643
No 426
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=20.73 E-value=1.3e+02 Score=26.29 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=29.1
Q ss_pred cCcc-ccCCHHHHHh--cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCC
Q 025140 11 SRCR-YQPSPDEVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD 66 (257)
Q Consensus 11 ~Ga~-~~~s~~ea~~--~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~ 66 (257)
.|.. ..++..++++ +.|+||+|.|++...+... ..+..|+.+||.+...
T Consensus 47 ~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a~-------~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 47 LGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHAR-------LLAELGKIVIDLTPAA 98 (285)
T ss_pred CCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHHH-------HHHHcCCEEEECCccc
Confidence 4543 3456777665 4677888887766554332 2244677777776544
No 427
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=20.42 E-value=4.8e+02 Score=22.70 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=53.5
Q ss_pred cCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEcCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHhhcCceEEE
Q 025140 25 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 104 (257)
Q Consensus 25 ~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ST~~p~~~~~la~~~~~~G~~~vdapV~g~~~~a~~g~l~i~ 104 (257)
+.|++|+-+....-++..+ +.+ +.....+||.+- ++++++...+...+.. +..... .....++
T Consensus 177 ~~DtlVLGCTHyPll~~~i---~~~---~~~~v~lids~~---~~a~~~~~~L~~~~~~-------~~~~~~-~~~~~f~ 239 (269)
T COG0796 177 GPDTLVLGCTHYPLLKPEI---QQV---LGEHVALIDSGA---ETARRLARLLSPEGLL-------AKGADG-GPDHRFF 239 (269)
T ss_pred CCCEEEEeCcCcHHHHHHH---HHH---hCCCceEeCCHH---HHHHHHHHHhChhhhc-------ccccCC-CcceEEE
Confidence 4789999888888888776 332 334556666543 6777777777654321 111010 1135889
Q ss_pred ecCChhHHHHHHHHHHHhcCC
Q 025140 105 AAGDKSLYNTVAPLLDIMGKS 125 (257)
Q Consensus 105 ~gg~~~~~~~~~~ll~~~~~~ 125 (257)
.+|+.+.+.+....+..++..
T Consensus 240 ~tg~~~~~~~~~~~~l~~~~~ 260 (269)
T COG0796 240 TTGDPDEFEQLLKRWLGLGFE 260 (269)
T ss_pred EcCCcHHHHHHHHHHhccCcc
Confidence 999998888887777666543
No 428
>PLN00203 glutamyl-tRNA reductase
Probab=20.40 E-value=80 Score=30.22 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=17.0
Q ss_pred cCCHHHHHhcCCEEEEecCChHH
Q 025140 16 QPSPDEVAASCDVTFAMLADPES 38 (257)
Q Consensus 16 ~~s~~ea~~~advvi~~l~~~~~ 38 (257)
.+++.+++.++|+||+|.+.+..
T Consensus 320 ~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 320 LDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred HhhHHHHHhcCCEEEEccCCCCC
Confidence 35677788888998888766543
No 429
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=20.37 E-value=47 Score=27.32 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCceecCC-CchHHHHHHHHHHHHHH
Q 025140 112 YNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGS 148 (257)
Q Consensus 112 ~~~~~~ll~~~~~~~~~~G~-~G~a~~~Kl~~n~~~~~ 148 (257)
.++++.+ +.-+..+.|+|+ .|.|+.-|-+.|.+++.
T Consensus 43 l~~i~~l-k~kg~~la~vGdvvGtGSSRKSa~NSvlW~ 79 (204)
T PF06434_consen 43 LEQIEEL-KEKGHPLAYVGDVVGTGSSRKSATNSVLWH 79 (204)
T ss_dssp HHHHHHH-HTTSS-EEEEEEEEEES---THHHHHHHHH
T ss_pred HHHHHHH-HHcCCcEEEecCccccCcccchhhhhhhhh
Confidence 3444443 456667899999 89999999999987654
No 430
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=20.13 E-value=1.2e+02 Score=28.04 Aligned_cols=44 Identities=9% Similarity=0.002 Sum_probs=30.7
Q ss_pred ccccCCHHHHHhcCCEEEEecCChHHHHHHhcCCCcccccCCCCCEEEEc
Q 025140 13 CRYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV 62 (257)
Q Consensus 13 a~~~~s~~ea~~~advvi~~l~~~~~v~~v~~~~~~~~~~l~~g~~ivd~ 62 (257)
...++++.|++++||+++++..++ +.+++=+ +-+ +.++.+|+|.
T Consensus 364 ~~~~~~~~~~~~~aDaivi~tew~-ef~~~d~--~~~---~m~~~~v~Dg 407 (414)
T COG1004 364 VELESDAEEALKGADAIVINTEWD-EFRDLDF--EKL---LMKTPVVIDG 407 (414)
T ss_pred ceEeCCHHHHHhhCCEEEEeccHH-HHhccCh--hhh---hccCCEEEec
Confidence 567899999999999999988764 3443321 112 4577888874
Done!