BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025142
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 105 YMWWKG----LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV 160
YM W+ LS+ LM+ + L K +E + + K+ T+R +NL D+
Sbjct: 671 YMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQY 730
Query: 161 EKQNEISKDIRKNVEEACDDLFKV---------EHNL--KDLQSMIYC 197
+ N IS + + C++L K E+N +L+S IYC
Sbjct: 731 SEINAISTACSNGLPQ-CENLAKTLFDQWMSDPENNPIHPNLRSTIYC 777
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 105 YMWWKG----LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV 160
YM W+ LS+ LM+ + L K +E + + K+ T+R +NL D+
Sbjct: 627 YMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQY 686
Query: 161 EKQNEISKDIRKNVEEACDDLFKV---------EHNL--KDLQSMIYC 197
+ N IS + + C++L K E+N +L+S IYC
Sbjct: 687 SEINAISTACSNGLPQ-CENLAKTLFDQWMSDPENNPIHPNLRSTIYC 733
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 105 YMWWKG----LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV 160
YM W+ LS+ LM+ + L K +E + + K+ T+R +NL D+
Sbjct: 627 YMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQY 686
Query: 161 EKQNEISKDIRKNVEEACDDLFKV---------EHNL--KDLQSMIYC 197
+ N IS + + C++L K E+N +L+S IYC
Sbjct: 687 SEINAISTACSNGLPQ-CENLAKTLFDQWMSDPENNPIHPNLRSTIYC 733
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 105 YMWWKG----LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV 160
YM W+ LS+ LM+ + L K +E + + K+ T+R +NL D+
Sbjct: 628 YMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQY 687
Query: 161 EKQNEISKDIRKNVEEACDDLFKV---------EHNL--KDLQSMIYC 197
+ N IS + + C++L K E+N +L+S IYC
Sbjct: 688 SEINAISTACSNGLPQ-CENLAKTLFDQWMSDPENNPIHPNLRSTIYC 734
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211
RI+ LN+K + E K + V+E F VEH KD + + D D A + DI
Sbjct: 20 RIRPLNEKESSERE--KQMLTTVDE-----FTVEHPWKDDKRKQHIYDRVFDMRASQDDI 72
Query: 212 TNIGMYLLCNFVDG 225
YL+ + VDG
Sbjct: 73 FEDTKYLVQSAVDG 86
>pdb|3AL4|B Chain B, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
pdb|3AL4|D Chain D, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
pdb|3AL4|F Chain F, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
pdb|3AL4|H Chain H, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
pdb|3AL4|J Chain J, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
pdb|3AL4|L Chain L, Crystal Structure Of The Swine-Origin A (H1n1)-2009
Influenza A Virus Hemagglutinin (Ha) Reveals Similar
Antigenicity To That Of The 1918 Pandemic Virus
Length = 181
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK---HLTQRIQN 155
G GY + +G +A + T+ ++ + +N +E + T K HL +RI+N
Sbjct: 20 GWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKRIEN 79
Query: 156 LNDKVE 161
LN KV+
Sbjct: 80 LNKKVD 85
>pdb|3LZG|B Chain B, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3LZG|D Chain D, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3LZG|F Chain F, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3LZG|H Chain H, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3LZG|J Chain J, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3LZG|L Chain L, Crystal Structure Of A 2009 H1n1 Influenza Virus
Hemagglutin
pdb|3UBE|B Chain B, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBE|D Chain D, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBE|F Chain F, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBE|H Chain H, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBE|J Chain J, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBE|L Chain L, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lstc
pdb|3UBJ|B Chain B, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBJ|D Chain D, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBJ|F Chain F, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBJ|H Chain H, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBJ|J Chain J, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBJ|L Chain L, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand Lsta
pdb|3UBN|B Chain B, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBN|D Chain D, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBN|F Chain F, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBN|H Chain H, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBN|J Chain J, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBN|L Chain L, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 6sln
pdb|3UBQ|B Chain B, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
pdb|3UBQ|D Chain D, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
pdb|3UBQ|F Chain F, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
pdb|3UBQ|H Chain H, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
pdb|3UBQ|J Chain J, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
pdb|3UBQ|L Chain L, Influenza Hemagglutinin From The 2009 Pandemic In Complex
With Ligand 3sln
Length = 177
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK---HLTQRIQN 155
G GY + +G +A + T+ ++ + +N +E + T K HL +RI+N
Sbjct: 20 GWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKRIEN 79
Query: 156 LNDKVE 161
LN KV+
Sbjct: 80 LNKKVD 85
>pdb|3ZTN|B Chain B, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H1 Influenza Haemagglutinin
Length = 176
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK---HLTQRIQN 155
G GY + +G +A + T+ ++ + +N +E + T K HL +RI+N
Sbjct: 20 GWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKRIEN 79
Query: 156 LNDKVE 161
LN KV+
Sbjct: 80 LNKKVD 85
>pdb|3M6S|B Chain B, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|D Chain D, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|F Chain F, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|H Chain H, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|J Chain J, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|L Chain L, Crystal Structure Of H1n1pdm Hemagglutinin
Length = 181
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK---HLTQRIQN 155
G GY + +G +A + T+ ++ + +N +E + T K HL +RI+N
Sbjct: 20 GWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKRIEN 79
Query: 156 LNDKVE 161
LN K++
Sbjct: 80 LNKKID 85
>pdb|4F3Z|B Chain B, Crystal Structure Of A Swine H1n2 Influenza Virus
Hemagglutinin
pdb|4F3Z|D Chain D, Crystal Structure Of A Swine H1n2 Influenza Virus
Hemagglutinin
pdb|4F3Z|F Chain F, Crystal Structure Of A Swine H1n2 Influenza Virus
Hemagglutinin
Length = 179
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESV-TEALTVAKK--HLTQRIQN 155
G GY + +G +A + T+ ++ + +N +E + T+ + V K+ HL +RI+N
Sbjct: 20 GWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFIAVGKEFNHLEKRIEN 79
Query: 156 LNDKVE 161
LN KV+
Sbjct: 80 LNKKVD 85
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 18/89 (20%)
Query: 16 AGLGYTGTILVKDGKLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNRLKFECQRASSG 75
AGL TG + V + P L+ +Q +E L+++ E+D D NR SG
Sbjct: 783 AGL-ITGALAVYTPENPINLQTVQEDIELLTRTYEED-------DGKNR---------SG 825
Query: 76 QIFVRNENSGGNATSLMIPAATLGALGYG 104
+IF+ NE + T+ +I AA +G G G
Sbjct: 826 KIFIHNEKASKVYTTDLI-AAIIGEAGKG 853
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196
S+T A H+ +R+++ V I+ D +KN E +D+F E +L DL+ M
Sbjct: 33 SITGAGGFIASHIARRLKHEGHYV-----IASDWKKN-EHMTEDMFCDEFHLVDLRVMEN 86
Query: 197 CL 198
CL
Sbjct: 87 CL 88
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196
S+T A H+ +R+++ V I+ D +KN E +D+F E +L DL+ M
Sbjct: 33 SITGAGGFIASHIARRLKHEGHYV-----IASDWKKN-EHMTEDMFCDEFHLVDLRVMEN 86
Query: 197 CL 198
CL
Sbjct: 87 CL 88
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196
S+T A H+ +R+++ V I+ D +KN E +D+F E +L DL+ M
Sbjct: 33 SITGAGGFIASHIARRLKHEGHYV-----IASDWKKN-EHMTEDMFCDEFHLVDLRVMEN 86
Query: 197 CL 198
CL
Sbjct: 87 CL 88
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196
S+T A H+ +R+++ V I+ D +KN E +D+F E +L DL+ M
Sbjct: 33 SITGAGGFIASHIARRLKHEGHYV-----IASDWKKN-EHMTEDMFCDEFHLVDLRVMEN 86
Query: 197 CL 198
CL
Sbjct: 87 CL 88
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
Length = 914
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 35 LRELQSLVERLSKSGEQDNFTDAIKDQLNRLK-FECQRASSGQIFVRNENSGGNATSL 91
L E+++LV R+ +D F I+DQLN FE + G++ ++ G N SL
Sbjct: 194 LNEIKNLVGRVIGREFKDKFIFEIRDQLNGNDVFEVSDSGDGKVLIK----GNNGVSL 247
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
Length = 891
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 35 LRELQSLVERLSKSGEQDNFTDAIKDQLNRLK-FECQRASSGQIFVRNENSGGNATSL 91
L E+++LV R+ +D F I+DQLN FE + G++ ++ G N SL
Sbjct: 171 LNEIKNLVGRVIGREFKDKFIFEIRDQLNGNDVFEVSDSGDGKVLIK----GNNGVSL 224
>pdb|3U60|A Chain A, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
Length = 195
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 23 TILVKDGKLPELLRELQSLV 42
+IL K+GKLP +L+EL+ LV
Sbjct: 142 SILTKNGKLPLVLKELKGLV 161
>pdb|3U5Z|A Chain A, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|K Chain K, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U61|A Chain A, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 199
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 23 TILVKDGKLPELLRELQSLV 42
+IL K+GKLP +L+EL+ LV
Sbjct: 142 SILTKNGKLPLVLKELKGLV 161
>pdb|2X92|A Chain A, Crystal Structure Of Ance-Ramiprilat Complex
pdb|2X93|A Chain A, Crystal Structure Of Ance-Trandolaprilat Complex
pdb|2X94|A Chain A, Crystal Structure Of Ance-Perindoprilat Complex
pdb|2X95|A Chain A, Crystal Structure Of Ance-Lisinopril-Tryptophan Analogue,
Lisw-S Complex
Length = 599
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185
+ NLNK L T T A I + N+K K+NEIS ++ K ++E D K +
Sbjct: 13 LENLNKELAKRTNVETEAAWAYGSNITDENEK--KKNEISAELAKFMKEVASDTTKFQ 68
>pdb|2X8Y|A Chain A, Crystal Structure Of Ance
pdb|2X8Z|A Chain A, Crystal Structure Of Ance-Captopril Complex
pdb|2X90|A Chain A, Crystal Structure Of Ance-Enalaprilat Complex
pdb|2X91|A Chain A, Crystal Structure Of Ance-Lisinopril Complex
pdb|2X96|A Chain A, Crystal Structure Of Ance-Rxpa380 Complex
pdb|2X97|A Chain A, Crystal Structure Of Ance-Rxp407 Complex
pdb|2XHM|A Chain A, Crystal Structure Of Ance-K26 Complex
pdb|3ZQZ|A Chain A, Crystal Structure Of Ance In Complex With A Selenium
Analogue Of Captopril
pdb|4AA1|A Chain A, Crystal Structure Of Ance In Complex With Angiotensin-Ii
pdb|4AA2|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
Potentiating Peptide B
pdb|4ASQ|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
pdb|4ASR|A Chain A, Crystal Structure Of Ance In Complex With Thr6-Bradykinin
Length = 598
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185
+ NLNK L T T A I + N+K K+NEIS ++ K ++E D K +
Sbjct: 13 LENLNKELAKRTNVETEAAWAYGSNITDENEK--KKNEISAELAKFMKEVASDTTKFQ 68
>pdb|1J36|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J36|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J37|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J37|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J38|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J38|B Chain B, Crystal Structure Of Drosophila Ance
Length = 607
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185
+ NLNK L T T A I + N+K K+NEIS ++ K ++E D K +
Sbjct: 16 LENLNKELAKRTNVETEAAWAYRSAITDENEK--KKNEISAELAKFMKEVASDTTKFQ 71
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 40/197 (20%)
Query: 21 TGTILVKDGKLPELLRELQSLVERLS------KSGEQDNFTD------AIKDQLNRLKFE 68
T TI +K+ + E++ L L + L K+ +NF D AIK+ L+ L E
Sbjct: 33 TSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYLNIE 92
Query: 69 CQRASSGQIFVRNENSGGNATSLMIPAATLGAL-GY-------------GYMWWKGL--- 111
+ I + S G +S I T+ A+ G+ GYM K +
Sbjct: 93 PKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGK 152
Query: 112 -SFADLMYVTRKSMATAVSN--------LNKHLESVTEALTVAKKHLTQRIQNLND--KV 160
S D +T K + +N + L++ + A+K + + +N+ K+
Sbjct: 153 ASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKI 212
Query: 161 EKQNEISKDIRKNVEEA 177
E ++EI K+I K ++EA
Sbjct: 213 ENKDEIFKEIDKVIDEA 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,854,486
Number of Sequences: 62578
Number of extensions: 257081
Number of successful extensions: 890
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 56
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)