Query 025142
Match_columns 257
No_of_seqs 68 out of 70
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07889 DUF1664: Protein of u 100.0 7.8E-62 1.7E-66 401.7 14.5 126 83-209 1-126 (126)
2 PF10805 DUF2730: Protein of u 96.4 0.01 2.2E-07 47.9 6.2 52 149-205 47-98 (106)
3 PF04375 HemX: HemX; InterPro 95.8 0.078 1.7E-06 50.8 10.4 10 99-108 41-50 (372)
4 PRK10884 SH3 domain-containing 95.7 0.4 8.6E-06 43.1 13.7 98 102-207 66-167 (206)
5 PRK11637 AmiB activator; Provi 95.3 0.23 4.9E-06 48.0 11.6 76 128-203 49-127 (428)
6 PF01519 DUF16: Protein of unk 95.3 0.15 3.3E-06 41.7 8.8 81 118-207 22-102 (102)
7 PRK03947 prefoldin subunit alp 94.0 1.8 3.9E-05 35.6 12.2 37 143-179 93-129 (140)
8 PHA02562 46 endonuclease subun 93.9 0.93 2E-05 44.4 12.1 90 130-219 192-281 (562)
9 PF14712 Snapin_Pallidin: Snap 93.5 1.7 3.6E-05 33.3 10.6 72 134-206 15-91 (92)
10 PF00038 Filament: Intermediat 93.5 3.2 6.9E-05 37.9 14.1 93 123-215 166-259 (312)
11 KOG2629 Peroxisomal membrane a 93.4 0.28 6.1E-06 46.7 7.2 87 87-174 82-177 (300)
12 PF07889 DUF1664: Protein of u 93.1 1.6 3.6E-05 36.7 10.7 33 168-200 92-124 (126)
13 PF11932 DUF3450: Protein of u 93.1 2.2 4.7E-05 38.5 12.2 91 134-224 25-119 (251)
14 TIGR01000 bacteriocin_acc bact 93.0 5.5 0.00012 38.8 15.8 50 17-72 66-124 (457)
15 PRK11637 AmiB activator; Provi 93.0 1.6 3.6E-05 42.2 12.0 78 129-206 43-123 (428)
16 PF04582 Reo_sigmaC: Reovirus 93.0 0.13 2.8E-06 49.5 4.4 86 123-208 67-155 (326)
17 PF12718 Tropomyosin_1: Tropom 92.9 2.2 4.7E-05 36.2 11.4 62 148-209 77-138 (143)
18 PF13747 DUF4164: Domain of un 92.8 1.5 3.3E-05 34.6 9.5 82 138-223 2-83 (89)
19 PF06103 DUF948: Bacterial pro 92.1 1.7 3.7E-05 33.3 8.8 28 118-145 18-45 (90)
20 PF10158 LOH1CR12: Tumour supp 91.6 5.1 0.00011 33.8 11.9 51 121-171 26-76 (131)
21 PRK10920 putative uroporphyrin 91.1 1.1 2.3E-05 44.1 8.3 56 99-162 48-103 (390)
22 COG4942 Membrane-bound metallo 90.8 4.1 8.9E-05 40.6 12.2 94 133-231 38-131 (420)
23 PF00015 MCPsignal: Methyl-acc 90.8 8.9 0.00019 32.1 13.7 21 54-74 41-62 (213)
24 PF10805 DUF2730: Protein of u 90.7 2.7 5.9E-05 33.8 9.1 37 185-221 64-100 (106)
25 PF10498 IFT57: Intra-flagella 90.1 5.2 0.00011 38.9 12.0 82 115-196 223-318 (359)
26 COG3883 Uncharacterized protei 89.8 3.6 7.8E-05 38.7 10.3 68 136-203 37-104 (265)
27 PF04513 Baculo_PEP_C: Baculov 89.1 8.5 0.00018 33.2 11.2 83 123-205 35-118 (140)
28 PF01442 Apolipoprotein: Apoli 88.7 10 0.00022 30.9 11.2 15 125-139 4-18 (202)
29 PHA02562 46 endonuclease subun 88.4 9.7 0.00021 37.4 12.7 48 157-204 336-383 (562)
30 PF05816 TelA: Toxic anion res 88.3 8.1 0.00018 36.6 11.7 100 120-219 85-202 (333)
31 PF05597 Phasin: Poly(hydroxya 87.9 4.4 9.5E-05 34.3 8.7 24 185-208 108-131 (132)
32 PF00015 MCPsignal: Methyl-acc 87.8 15 0.00033 30.8 12.9 72 131-202 87-158 (213)
33 PF11932 DUF3450: Protein of u 87.8 12 0.00025 33.8 12.0 65 130-194 35-99 (251)
34 PRK04406 hypothetical protein; 87.7 4 8.7E-05 31.3 7.6 50 144-193 4-53 (75)
35 TIGR00293 prefoldin, archaeal 87.4 1.8 4E-05 34.8 5.9 53 99-182 72-124 (126)
36 PF06103 DUF948: Bacterial pro 87.2 8.5 0.00018 29.4 9.3 57 149-205 31-87 (90)
37 PF06419 COG6: Conserved oligo 87.2 6.8 0.00015 40.3 11.2 89 113-211 6-98 (618)
38 PRK10884 SH3 domain-containing 87.0 8.8 0.00019 34.6 10.6 114 71-191 50-165 (206)
39 TIGR02132 phaR_Bmeg polyhydrox 86.9 2.8 6E-05 37.7 7.2 21 184-204 112-132 (189)
40 PF05478 Prominin: Prominin; 86.7 9.5 0.00021 40.3 12.2 34 127-160 188-222 (806)
41 PRK06975 bifunctional uroporph 86.3 2.3 4.9E-05 44.0 7.3 33 142-174 376-408 (656)
42 PF10241 KxDL: Uncharacterized 86.2 9.4 0.0002 29.8 9.1 61 144-204 18-82 (88)
43 PF05531 NPV_P10: Nucleopolyhe 85.9 3.8 8.3E-05 31.9 6.7 22 184-205 40-61 (75)
44 PRK09039 hypothetical protein; 85.8 13 0.00027 35.7 11.6 81 142-222 107-195 (343)
45 PF07798 DUF1640: Protein of u 85.8 22 0.00048 30.7 14.1 31 118-148 43-73 (177)
46 COG2959 HemX Uncharacterized e 85.5 6.9 0.00015 38.7 9.7 61 91-162 39-101 (391)
47 KOG0250 DNA repair protein RAD 85.3 13 0.00029 41.0 12.6 92 133-224 291-382 (1074)
48 PF10498 IFT57: Intra-flagella 85.2 9.2 0.0002 37.2 10.4 91 112-206 231-348 (359)
49 PF00261 Tropomyosin: Tropomyo 85.2 16 0.00034 32.9 11.3 70 150-219 91-160 (237)
50 smart00502 BBC B-Box C-termina 85.2 15 0.00032 28.1 10.1 15 211-225 86-100 (127)
51 PRK04778 septation ring format 85.1 24 0.00052 35.8 13.7 12 58-69 254-265 (569)
52 PF12732 YtxH: YtxH-like prote 85.1 2.6 5.7E-05 31.4 5.3 47 91-144 5-51 (74)
53 PF12325 TMF_TATA_bd: TATA ele 85.0 8.1 0.00018 32.2 8.7 65 120-185 45-109 (120)
54 PF05739 SNARE: SNARE domain; 84.6 9.4 0.0002 26.8 7.8 53 151-203 4-56 (63)
55 smart00283 MA Methyl-accepting 84.4 24 0.00053 30.0 14.8 20 55-74 93-113 (262)
56 PF05791 Bacillus_HBL: Bacillu 84.4 18 0.00039 31.6 11.0 89 120-208 78-171 (184)
57 KOG3433 Protein involved in me 84.3 20 0.00043 32.6 11.3 130 97-246 61-197 (203)
58 KOG0972 Huntingtin interacting 84.1 15 0.00032 35.9 11.0 99 109-207 223-326 (384)
59 PF09602 PhaP_Bmeg: Polyhydrox 83.7 16 0.00036 32.3 10.4 92 108-209 14-108 (165)
60 PRK13182 racA polar chromosome 83.7 5.9 0.00013 34.9 7.7 62 144-207 85-146 (175)
61 PRK14011 prefoldin subunit alp 83.4 3.8 8.2E-05 35.1 6.2 41 141-181 85-125 (144)
62 PF08614 ATG16: Autophagy prot 83.2 5.7 0.00012 34.6 7.5 96 112-207 71-172 (194)
63 cd00890 Prefoldin Prefoldin is 83.2 4.4 9.5E-05 32.1 6.2 38 146-183 89-126 (129)
64 cd00584 Prefoldin_alpha Prefol 83.1 4.5 9.7E-05 32.7 6.3 42 142-183 85-126 (129)
65 TIGR01837 PHA_granule_1 poly(h 83.0 9.7 0.00021 31.3 8.3 44 164-207 73-117 (118)
66 PF04102 SlyX: SlyX; InterPro 82.8 5.7 0.00012 29.7 6.3 51 149-206 2-52 (69)
67 PF12718 Tropomyosin_1: Tropom 82.3 30 0.00064 29.3 11.7 89 126-218 17-105 (143)
68 COG1196 Smc Chromosome segrega 82.3 25 0.00055 38.6 13.4 68 155-223 443-510 (1163)
69 PF02996 Prefoldin: Prefoldin 81.5 3.7 8E-05 32.4 5.2 76 76-182 39-115 (120)
70 PF04380 BMFP: Membrane fusoge 81.2 7 0.00015 30.0 6.4 77 118-207 2-78 (79)
71 PF10046 BLOC1_2: Biogenesis o 81.0 26 0.00056 27.8 11.9 68 141-208 25-95 (99)
72 KOG1161 Protein involved in va 80.9 6.1 0.00013 38.0 7.2 70 123-193 45-114 (310)
73 PF08317 Spc7: Spc7 kinetochor 80.7 52 0.0011 31.1 13.4 47 115-161 152-201 (325)
74 PF04799 Fzo_mitofusin: fzo-li 80.5 9.7 0.00021 33.8 7.9 82 118-207 83-165 (171)
75 PF03915 AIP3: Actin interacti 80.5 13 0.00028 37.1 9.6 84 139-222 201-304 (424)
76 smart00806 AIP3 Actin interact 80.3 17 0.00036 36.5 10.3 101 123-223 177-309 (426)
77 COG1579 Zn-ribbon protein, pos 80.2 10 0.00022 35.2 8.2 56 152-207 11-66 (239)
78 PRK15048 methyl-accepting chem 79.8 52 0.0011 32.4 13.6 50 140-189 273-322 (553)
79 PRK00295 hypothetical protein; 79.8 10 0.00022 28.5 6.7 46 149-194 3-48 (68)
80 PF04799 Fzo_mitofusin: fzo-li 79.7 15 0.00033 32.6 8.8 44 144-187 120-166 (171)
81 PRK02119 hypothetical protein; 79.7 12 0.00027 28.4 7.3 45 148-192 6-50 (73)
82 PRK04778 septation ring format 79.6 28 0.0006 35.4 11.8 39 167-205 378-416 (569)
83 PF14257 DUF4349: Domain of un 79.6 7.1 0.00015 35.3 7.0 53 151-203 139-193 (262)
84 PF06295 DUF1043: Protein of u 79.3 16 0.00036 30.2 8.5 41 137-177 29-69 (128)
85 COG4942 Membrane-bound metallo 79.2 34 0.00074 34.3 12.0 89 120-208 158-253 (420)
86 TIGR03513 GldL_gliding gliding 79.2 48 0.001 30.2 12.0 90 114-205 102-191 (202)
87 PRK09793 methyl-accepting prot 78.7 57 0.0012 32.3 13.5 9 245-253 525-533 (533)
88 PRK02793 phi X174 lysis protei 78.6 12 0.00026 28.4 6.9 44 148-191 5-48 (72)
89 PF09177 Syntaxin-6_N: Syntaxi 78.4 12 0.00025 29.3 7.0 57 142-205 37-96 (97)
90 PF07888 CALCOCO1: Calcium bin 78.4 21 0.00047 36.8 10.6 60 114-173 129-193 (546)
91 PF04375 HemX: HemX; InterPro 78.4 24 0.00052 34.0 10.5 109 95-207 40-168 (372)
92 PF04513 Baculo_PEP_C: Baculov 78.3 44 0.00095 28.9 11.1 78 124-204 18-103 (140)
93 COG1196 Smc Chromosome segrega 78.2 51 0.0011 36.3 14.1 35 176-210 867-901 (1163)
94 PF06008 Laminin_I: Laminin Do 78.0 35 0.00076 30.9 11.0 82 123-208 21-102 (264)
95 PF10168 Nup88: Nuclear pore c 77.9 27 0.00058 37.0 11.4 28 190-217 590-617 (717)
96 PF04129 Vps52: Vps52 / Sac2 f 77.9 24 0.00052 35.5 10.7 53 151-203 14-66 (508)
97 PF15450 DUF4631: Domain of un 77.5 24 0.00053 36.3 10.6 95 112-206 333-450 (531)
98 PRK00846 hypothetical protein; 77.3 19 0.00041 28.1 7.8 54 146-206 8-61 (77)
99 PF02403 Seryl_tRNA_N: Seryl-t 77.3 15 0.00033 28.7 7.4 26 143-171 35-60 (108)
100 smart00787 Spc7 Spc7 kinetocho 77.3 54 0.0012 31.3 12.4 98 120-217 152-256 (312)
101 PRK04325 hypothetical protein; 77.1 16 0.00035 27.9 7.2 44 148-191 6-49 (74)
102 PF08317 Spc7: Spc7 kinetochor 77.1 38 0.00083 31.9 11.3 48 142-189 175-226 (325)
103 PF04582 Reo_sigmaC: Reovirus 76.1 4.7 0.0001 39.0 5.0 54 150-203 104-157 (326)
104 COG2900 SlyX Uncharacterized p 76.0 17 0.00037 28.2 7.1 53 146-198 3-55 (72)
105 PRK09039 hypothetical protein; 76.0 58 0.0013 31.2 12.3 16 54-69 54-69 (343)
106 PRK00736 hypothetical protein; 76.0 17 0.00036 27.3 6.9 43 149-191 3-45 (68)
107 PF06160 EzrA: Septation ring 75.4 21 0.00045 36.3 9.6 61 136-196 371-431 (560)
108 KOG0161 Myosin class II heavy 75.1 27 0.00058 41.0 11.3 80 127-206 1362-1441(1930)
109 KOG0250 DNA repair protein RAD 74.8 33 0.00071 38.1 11.3 60 148-207 362-422 (1074)
110 PF05008 V-SNARE: Vesicle tran 74.7 19 0.0004 26.7 6.9 50 125-177 2-51 (79)
111 PF03233 Cauli_AT: Aphid trans 74.3 9.8 0.00021 33.6 6.1 50 142-191 109-161 (163)
112 PF14197 Cep57_CLD_2: Centroso 73.8 37 0.00079 25.7 8.7 65 141-205 2-66 (69)
113 PF05377 FlaC_arch: Flagella a 73.8 9.1 0.0002 28.3 4.9 16 171-186 20-35 (55)
114 PF10186 Atg14: UV radiation r 73.1 68 0.0015 28.5 13.9 47 143-189 62-108 (302)
115 PRK05431 seryl-tRNA synthetase 72.8 18 0.00038 35.6 8.1 66 142-211 33-98 (425)
116 PF00509 Hemagglutinin: Haemag 72.5 4.6 0.0001 41.5 4.2 78 119-196 364-451 (550)
117 PF08702 Fib_alpha: Fibrinogen 72.4 61 0.0013 27.7 12.5 96 113-208 23-126 (146)
118 PF10168 Nup88: Nuclear pore c 72.3 65 0.0014 34.2 12.5 79 124-205 541-619 (717)
119 cd00632 Prefoldin_beta Prefold 71.9 16 0.00034 28.9 6.3 14 56-69 16-29 (105)
120 TIGR03495 phage_LysB phage lys 71.8 13 0.00029 31.7 6.2 14 97-110 8-21 (135)
121 PF04912 Dynamitin: Dynamitin 71.8 44 0.00096 32.2 10.5 56 147-205 332-387 (388)
122 PF02994 Transposase_22: L1 tr 71.7 11 0.00024 36.5 6.3 31 173-203 159-189 (370)
123 TIGR03185 DNA_S_dndD DNA sulfu 71.6 45 0.00098 34.2 11.0 30 174-203 437-466 (650)
124 PF00261 Tropomyosin: Tropomyo 71.3 78 0.0017 28.5 12.1 78 123-200 145-225 (237)
125 COG1842 PspA Phage shock prote 70.9 54 0.0012 30.0 10.3 94 113-211 86-184 (225)
126 PRK03918 chromosome segregatio 70.7 70 0.0015 33.4 12.3 11 151-161 640-650 (880)
127 PF10779 XhlA: Haemolysin XhlA 70.4 23 0.0005 26.4 6.6 15 148-162 3-17 (71)
128 COG5283 Phage-related tail pro 70.3 44 0.00095 37.6 11.0 110 124-233 27-146 (1213)
129 PRK02224 chromosome segregatio 70.2 1.2E+02 0.0026 31.9 13.9 29 134-162 163-198 (880)
130 cd07912 Tweety_N N-terminal do 69.9 32 0.00069 34.3 9.2 83 97-184 93-184 (418)
131 COG3883 Uncharacterized protei 69.9 30 0.00066 32.7 8.6 50 153-202 33-82 (265)
132 PF03908 Sec20: Sec20; InterP 69.8 49 0.0011 25.6 10.9 60 136-199 4-63 (92)
133 TIGR03185 DNA_S_dndD DNA sulfu 69.8 63 0.0014 33.2 11.6 34 172-205 428-461 (650)
134 PRK04863 mukB cell division pr 69.7 98 0.0021 35.7 13.9 26 126-151 314-339 (1486)
135 PRK03918 chromosome segregatio 69.7 40 0.00086 35.1 10.3 65 134-198 159-226 (880)
136 PF00804 Syntaxin: Syntaxin; 69.7 43 0.00093 24.8 9.7 64 124-187 5-71 (103)
137 COG3750 Uncharacterized protei 69.5 32 0.0007 27.4 7.4 46 144-196 14-59 (85)
138 PRK10803 tol-pal system protei 69.4 17 0.00037 33.5 6.8 36 169-204 65-100 (263)
139 PF04100 Vps53_N: Vps53-like, 69.2 26 0.00057 34.1 8.4 84 169-253 75-160 (383)
140 TIGR00833 actII Transport prot 69.2 44 0.00095 35.9 10.7 42 182-223 603-644 (910)
141 PF09403 FadA: Adhesion protei 69.0 70 0.0015 27.0 12.0 83 122-204 23-111 (126)
142 PF07439 DUF1515: Protein of u 68.9 38 0.00082 28.4 8.0 55 129-183 4-65 (112)
143 PF02646 RmuC: RmuC family; I 68.8 38 0.00082 31.8 9.1 43 123-165 3-45 (304)
144 PRK10698 phage shock protein P 68.7 63 0.0014 29.2 10.2 80 128-212 97-185 (222)
145 PF04111 APG6: Autophagy prote 68.7 55 0.0012 31.1 10.2 68 139-206 66-133 (314)
146 PHA01750 hypothetical protein 68.5 17 0.00036 28.2 5.5 32 115-146 23-55 (75)
147 PRK11166 chemotaxis regulator 68.5 69 0.0015 29.4 10.4 84 122-205 26-121 (214)
148 TIGR00606 rad50 rad50. This fa 68.5 1E+02 0.0022 34.6 13.5 74 119-192 881-954 (1311)
149 smart00787 Spc7 Spc7 kinetocho 68.4 50 0.0011 31.6 9.9 67 142-208 170-240 (312)
150 COG3165 Uncharacterized protei 68.4 20 0.00044 32.7 6.9 67 136-208 133-201 (204)
151 PLN03094 Substrate binding sub 68.2 29 0.00062 34.1 8.4 20 133-152 293-312 (370)
152 PF05266 DUF724: Protein of un 67.9 90 0.0019 27.8 11.2 63 143-205 123-185 (190)
153 PF08700 Vps51: Vps51/Vps67; 67.8 48 0.001 24.6 8.3 62 142-206 24-85 (87)
154 PF01442 Apolipoprotein: Apoli 67.5 65 0.0014 26.1 11.8 12 169-180 108-119 (202)
155 PRK04098 sec-independent trans 67.5 24 0.00053 31.0 7.0 31 123-153 24-54 (158)
156 PRK02224 chromosome segregatio 67.5 83 0.0018 33.0 12.1 13 29-42 35-47 (880)
157 PF07851 TMPIT: TMPIT-like pro 67.1 57 0.0012 31.8 10.1 50 135-184 9-58 (330)
158 PF06120 Phage_HK97_TLTM: Tail 67.0 78 0.0017 30.4 10.8 110 92-214 24-152 (301)
159 KOG4117 Heat shock factor bind 66.1 44 0.00096 25.8 7.3 44 121-164 11-54 (73)
160 PF07295 DUF1451: Protein of u 66.1 40 0.00088 28.9 8.0 83 136-218 3-103 (146)
161 PF10267 Tmemb_cc2: Predicted 66.0 88 0.0019 31.1 11.3 52 152-206 259-318 (395)
162 PF10046 BLOC1_2: Biogenesis o 65.8 65 0.0014 25.5 10.8 20 185-204 79-98 (99)
163 PRK11091 aerobic respiration c 65.6 1.4E+02 0.0031 30.5 13.2 35 129-163 88-122 (779)
164 PF05791 Bacillus_HBL: Bacillu 65.5 93 0.002 27.1 10.6 75 129-203 106-180 (184)
165 KOG2391 Vacuolar sorting prote 65.5 92 0.002 30.8 11.1 68 115-183 218-285 (365)
166 PF03962 Mnd1: Mnd1 family; I 65.4 98 0.0021 27.3 12.0 116 111-233 57-175 (188)
167 PF10828 DUF2570: Protein of u 64.5 39 0.00084 27.2 7.2 16 98-113 12-27 (110)
168 PF09304 Cortex-I_coil: Cortex 64.4 59 0.0013 27.0 8.3 77 120-203 10-89 (107)
169 PF15188 CCDC-167: Coiled-coil 64.4 31 0.00067 27.4 6.4 62 130-206 2-63 (85)
170 PF06156 DUF972: Protein of un 64.3 43 0.00092 27.4 7.5 31 121-151 3-33 (107)
171 PRK10698 phage shock protein P 64.1 1.1E+02 0.0024 27.6 11.7 41 170-210 97-137 (222)
172 KOG4674 Uncharacterized conser 64.0 69 0.0015 37.7 11.3 24 137-160 791-814 (1822)
173 PF09730 BicD: Microtubule-ass 63.8 1.5E+02 0.0033 31.8 13.2 100 126-232 373-472 (717)
174 PF05478 Prominin: Prominin; 63.8 55 0.0012 34.7 10.1 43 116-158 159-201 (806)
175 TIGR01843 type_I_hlyD type I s 63.7 1.3E+02 0.0027 28.1 13.3 15 55-69 83-97 (423)
176 PF02646 RmuC: RmuC family; I 63.5 49 0.0011 31.0 8.7 63 133-196 2-65 (304)
177 PF10018 Med4: Vitamin-D-recep 63.0 64 0.0014 28.2 8.8 51 135-185 11-63 (188)
178 PF00038 Filament: Intermediat 62.9 1.1E+02 0.0024 27.9 10.8 67 144-210 68-134 (312)
179 PF07106 TBPIP: Tat binding pr 62.7 42 0.0009 28.5 7.5 27 55-81 23-52 (169)
180 COG5185 HEC1 Protein involved 62.5 1.1E+02 0.0023 31.9 11.3 62 106-167 360-423 (622)
181 PF12732 YtxH: YtxH-like prote 62.5 36 0.00079 25.2 6.3 21 128-148 28-48 (74)
182 PF10073 DUF2312: Uncharacteri 62.4 39 0.00084 26.4 6.5 46 145-197 5-50 (74)
183 PF15450 DUF4631: Domain of un 62.4 99 0.0021 32.1 11.1 89 122-210 336-436 (531)
184 PF03148 Tektin: Tektin family 62.3 1.6E+02 0.0034 28.7 12.2 16 116-131 202-217 (384)
185 PLN02678 seryl-tRNA synthetase 62.0 38 0.00083 33.9 8.1 65 142-210 38-102 (448)
186 KOG0996 Structural maintenance 61.9 50 0.0011 37.3 9.5 83 134-216 395-477 (1293)
187 PF06320 GCN5L1: GCN5-like pro 61.7 92 0.002 25.8 10.7 43 167-209 49-91 (121)
188 PF05701 WEMBL: Weak chloropla 61.5 69 0.0015 32.4 9.9 41 164-204 308-348 (522)
189 COG1730 GIM5 Predicted prefold 61.4 32 0.00069 29.7 6.5 61 99-161 63-132 (145)
190 PF10234 Cluap1: Clusterin-ass 61.3 68 0.0015 30.3 9.2 80 125-205 123-202 (267)
191 COG4026 Uncharacterized protei 61.2 1.5E+02 0.0032 28.2 11.2 8 121-128 109-116 (290)
192 cd07628 BAR_Atg24p The Bin/Amp 61.0 75 0.0016 27.7 8.9 76 148-223 8-84 (185)
193 PF03670 UPF0184: Uncharacteri 60.7 42 0.00091 26.7 6.6 46 128-177 28-73 (83)
194 PF10267 Tmemb_cc2: Predicted 60.4 1.2E+02 0.0025 30.3 11.0 77 124-203 217-293 (395)
195 PF05384 DegS: Sensor protein 60.2 43 0.00094 29.2 7.2 39 166-204 56-95 (159)
196 KOG3385 V-SNARE [Intracellular 59.9 32 0.00069 29.1 6.1 68 148-220 33-100 (118)
197 COG5124 Protein predicted to b 59.9 1.2E+02 0.0025 27.8 10.0 42 111-155 70-111 (209)
198 PF05667 DUF812: Protein of un 59.8 97 0.0021 32.3 10.8 89 122-210 397-485 (594)
199 PF10241 KxDL: Uncharacterized 59.8 81 0.0018 24.5 9.0 58 131-195 23-80 (88)
200 TIGR00634 recN DNA repair prot 59.8 73 0.0016 32.2 9.8 31 126-156 266-296 (563)
201 TIGR00414 serS seryl-tRNA synt 59.5 83 0.0018 30.9 9.9 73 141-217 34-107 (418)
202 PF11945 WASH_WAHD: WAHD domai 59.4 54 0.0012 31.3 8.3 54 126-179 18-71 (297)
203 PF06009 Laminin_II: Laminin D 59.3 3.1 6.6E-05 34.7 0.0 43 169-211 42-84 (138)
204 COG2433 Uncharacterized conser 59.2 76 0.0016 33.6 9.8 74 134-207 419-509 (652)
205 PF07888 CALCOCO1: Calcium bin 59.2 1.5E+02 0.0033 30.8 11.9 49 168-216 279-327 (546)
206 PF05701 WEMBL: Weak chloropla 59.1 1.3E+02 0.0029 30.4 11.4 43 166-208 282-324 (522)
207 PRK12687 flagellin; Reviewed 59.1 1.6E+02 0.0035 27.8 15.0 30 53-82 107-140 (311)
208 COG1283 NptA Na+/phosphate sym 59.0 1.2E+02 0.0027 31.4 11.2 98 120-224 336-449 (533)
209 COG3352 FlaC Putative archaeal 58.9 78 0.0017 28.0 8.5 71 120-191 70-141 (157)
210 PHA03395 p10 fibrous body prot 58.9 35 0.00075 27.4 5.8 11 153-163 13-23 (87)
211 PF06156 DUF972: Protein of un 58.9 24 0.00053 28.8 5.1 55 146-200 3-57 (107)
212 PF10602 RPN7: 26S proteasome 58.9 38 0.00083 29.2 6.7 58 141-200 4-61 (177)
213 PF04740 LXG: LXG domain of WX 58.8 1.2E+02 0.0025 26.0 12.2 29 181-209 140-168 (204)
214 PF08172 CASP_C: CASP C termin 58.8 43 0.00093 31.0 7.4 51 136-186 78-128 (248)
215 PHA00276 phage lambda Rz-like 58.8 55 0.0012 28.5 7.5 32 159-190 50-81 (144)
216 PF12128 DUF3584: Protein of u 58.7 1.2E+02 0.0026 33.7 11.9 93 128-223 258-351 (1201)
217 PF09738 DUF2051: Double stran 58.5 29 0.00063 33.2 6.3 76 144-221 105-180 (302)
218 KOG4593 Mitotic checkpoint pro 58.4 2.3E+02 0.005 30.5 13.2 98 122-219 115-212 (716)
219 COG4026 Uncharacterized protei 58.4 58 0.0013 30.8 8.1 30 144-173 149-178 (290)
220 PRK10803 tol-pal system protei 58.4 46 0.001 30.6 7.5 47 144-190 54-100 (263)
221 PF04100 Vps53_N: Vps53-like, 58.3 1.8E+02 0.0038 28.4 11.8 99 126-224 25-151 (383)
222 cd07667 BAR_SNX30 The Bin/Amph 58.1 1.6E+02 0.0035 27.4 12.8 31 122-152 103-133 (240)
223 COG1256 FlgK Flagellar hook-as 58.1 84 0.0018 32.4 9.9 82 119-204 131-212 (552)
224 cd00193 t_SNARE Soluble NSF (N 57.9 55 0.0012 22.0 7.4 46 151-196 6-51 (60)
225 TIGR02231 conserved hypothetic 57.9 1.3E+02 0.0029 29.9 11.1 21 124-144 69-89 (525)
226 PF03915 AIP3: Actin interacti 57.6 2E+02 0.0044 28.9 12.2 35 118-152 205-239 (424)
227 PRK13729 conjugal transfer pil 57.5 29 0.00064 35.3 6.5 51 159-209 70-120 (475)
228 cd07622 BAR_SNX4 The Bin/Amphi 57.5 1.4E+02 0.0031 26.6 10.6 69 108-188 58-126 (201)
229 TIGR02338 gimC_beta prefoldin, 57.4 36 0.00078 27.2 5.9 21 117-138 59-79 (110)
230 PF15361 RIC3: Resistance to i 57.0 4.6 9.9E-05 34.8 0.7 69 82-150 75-148 (152)
231 TIGR02132 phaR_Bmeg polyhydrox 57.0 65 0.0014 29.2 7.9 44 148-191 83-133 (189)
232 PF06008 Laminin_I: Laminin Do 56.9 1.5E+02 0.0033 26.8 10.6 73 135-214 169-241 (264)
233 PF01920 Prefoldin_2: Prefoldi 56.8 47 0.001 25.2 6.3 12 58-69 17-28 (106)
234 PF02994 Transposase_22: L1 tr 56.7 18 0.00039 35.0 4.7 40 171-210 150-189 (370)
235 COG1463 Ttg2C ABC-type transpo 56.5 1.4E+02 0.003 28.5 10.6 87 130-216 215-301 (359)
236 COG1340 Uncharacterized archae 56.5 1.5E+02 0.0032 28.7 10.6 70 134-203 52-124 (294)
237 smart00502 BBC B-Box C-termina 56.5 87 0.0019 23.8 11.6 37 125-161 20-56 (127)
238 PF03114 BAR: BAR domain; Int 56.3 88 0.0019 26.0 8.3 20 54-73 27-47 (229)
239 TIGR00606 rad50 rad50. This fa 56.2 2.1E+02 0.0045 32.2 13.2 38 182-219 987-1024(1311)
240 PF06148 COG2: COG (conserved 55.9 18 0.00038 29.6 3.9 47 123-169 66-112 (133)
241 PF01920 Prefoldin_2: Prefoldi 55.6 89 0.0019 23.7 9.7 24 141-164 9-32 (106)
242 PRK10778 dksA RNA polymerase-b 55.6 23 0.0005 30.5 4.7 108 107-225 6-119 (151)
243 PF04380 BMFP: Membrane fusoge 55.4 93 0.002 23.8 8.3 24 185-208 49-72 (79)
244 PF06160 EzrA: Septation ring 55.3 2.5E+02 0.0054 28.7 13.8 31 191-221 377-407 (560)
245 PRK13694 hypothetical protein; 55.2 83 0.0018 25.1 7.4 48 143-197 11-58 (83)
246 cd07667 BAR_SNX30 The Bin/Amph 55.1 1.2E+02 0.0026 28.3 9.5 76 148-223 55-130 (240)
247 KOG0995 Centromere-associated 55.1 2.5E+02 0.0054 29.5 12.6 27 113-139 215-241 (581)
248 COG3074 Uncharacterized protei 55.1 1E+02 0.0022 24.2 8.4 58 153-210 6-63 (79)
249 PF01544 CorA: CorA-like Mg2+ 54.9 1.3E+02 0.0027 26.4 9.4 46 116-161 115-161 (292)
250 cd00179 SynN Syntaxin N-termin 54.8 1.1E+02 0.0025 24.7 9.4 18 126-143 6-23 (151)
251 TIGR02976 phageshock_pspB phag 54.8 10 0.00022 29.3 2.2 44 116-162 24-67 (75)
252 PF06320 GCN5L1: GCN5-like pro 54.6 1.2E+02 0.0027 25.0 10.5 54 142-196 52-109 (121)
253 TIGR01000 bacteriocin_acc bact 54.5 1.5E+02 0.0032 29.1 10.6 49 124-172 152-200 (457)
254 KOG0240 Kinesin (SMY1 subfamil 54.5 2.9E+02 0.0062 29.2 13.1 65 115-179 385-456 (607)
255 TIGR02550 flagell_flgL flagell 54.4 1.7E+02 0.0037 26.6 13.4 21 54-74 105-126 (306)
256 TIGR00634 recN DNA repair prot 54.1 1.3E+02 0.0028 30.5 10.4 42 122-163 269-313 (563)
257 PF04124 Dor1: Dor1-like famil 54.0 1.6E+02 0.0036 27.7 10.6 70 139-208 16-89 (338)
258 PRK15048 methyl-accepting chem 53.7 2.3E+02 0.005 27.9 14.1 63 142-204 254-316 (553)
259 PF12777 MT: Microtubule-bindi 53.6 54 0.0012 31.2 7.3 104 123-234 218-331 (344)
260 PF06009 Laminin_II: Laminin D 53.4 4.4 9.5E-05 33.8 0.0 62 152-213 18-79 (138)
261 cd07651 F-BAR_PombeCdc15_like 53.3 1.6E+02 0.0036 26.1 13.3 39 113-151 94-132 (236)
262 PF12761 End3: Actin cytoskele 53.2 1.1E+02 0.0024 27.8 8.7 28 176-203 157-184 (195)
263 COG0598 CorA Mg2+ and Co2+ tra 53.1 1.8E+02 0.0038 27.3 10.5 49 115-163 143-192 (322)
264 KOG1961 Vacuolar sorting prote 53.0 69 0.0015 33.9 8.4 71 149-226 73-143 (683)
265 cd07621 BAR_SNX5_6 The Bin/Amp 52.6 1.1E+02 0.0024 28.0 8.8 77 115-194 48-125 (219)
266 PF10280 Med11: Mediator compl 52.5 1.3E+02 0.0028 24.6 8.6 65 151-225 6-77 (117)
267 PRK01919 tatB sec-independent 52.4 1.7E+02 0.0038 26.1 9.8 32 122-153 23-54 (169)
268 KOG0994 Extracellular matrix g 52.3 41 0.0009 38.2 7.0 43 164-206 1252-1294(1758)
269 KOG0860 Synaptobrevin/VAMP-lik 52.3 1.4E+02 0.0031 25.1 9.2 70 150-219 28-97 (116)
270 KOG0804 Cytoplasmic Zn-finger 52.2 2E+02 0.0044 29.5 11.2 30 134-163 365-394 (493)
271 TIGR02492 flgK_ends flagellar 52.1 1.7E+02 0.0036 27.5 10.3 45 119-163 127-171 (322)
272 PF04906 Tweety: Tweety; Inte 52.0 1.5E+02 0.0032 29.1 10.3 86 98-185 74-162 (406)
273 cd07666 BAR_SNX7 The Bin/Amphi 51.9 2E+02 0.0044 26.7 10.8 79 123-205 107-196 (243)
274 PF15070 GOLGA2L5: Putative go 51.8 3.1E+02 0.0067 28.8 13.2 21 143-163 42-62 (617)
275 cd07596 BAR_SNX The Bin/Amphip 51.8 1.4E+02 0.0031 24.9 13.4 47 122-171 60-106 (218)
276 TIGR02231 conserved hypothetic 51.6 1.3E+02 0.0028 30.0 9.9 46 161-206 127-172 (525)
277 KOG0978 E3 ubiquitin ligase in 51.5 1.6E+02 0.0036 31.5 11.0 84 122-205 534-620 (698)
278 KOG0796 Spliceosome subunit [R 51.5 2E+02 0.0042 28.1 10.7 96 122-224 86-193 (319)
279 PF02403 Seryl_tRNA_N: Seryl-t 51.3 1.2E+02 0.0025 23.7 9.5 30 188-217 69-98 (108)
280 PF13514 AAA_27: AAA domain 51.2 2.3E+02 0.005 31.1 12.5 164 9-215 114-285 (1111)
281 PF05384 DegS: Sensor protein 51.2 97 0.0021 27.1 7.9 49 143-191 97-145 (159)
282 TIGR03752 conj_TIGR03752 integ 51.1 2.5E+02 0.0054 28.8 11.7 78 122-205 62-142 (472)
283 TIGR00833 actII Transport prot 51.1 2.4E+02 0.0051 30.5 12.3 117 54-188 520-637 (910)
284 PF10883 DUF2681: Protein of u 50.9 14 0.0003 29.5 2.4 18 96-113 11-28 (87)
285 KOG4603 TBP-1 interacting prot 50.8 78 0.0017 28.7 7.4 58 149-206 84-143 (201)
286 PRK15396 murein lipoprotein; P 50.6 75 0.0016 24.8 6.4 36 149-184 30-65 (78)
287 PRK14011 prefoldin subunit alp 50.2 1.6E+02 0.0036 25.2 10.7 48 97-161 72-119 (144)
288 KOG2180 Late Golgi protein sor 50.2 66 0.0014 34.6 7.8 20 145-164 41-60 (793)
289 PF00957 Synaptobrevin: Synapt 50.1 1.1E+02 0.0024 23.1 9.9 22 130-151 7-28 (89)
290 PF09748 Med10: Transcription 50.1 1.5E+02 0.0032 24.6 9.1 44 126-169 3-51 (128)
291 KOG2629 Peroxisomal membrane a 50.0 91 0.002 30.1 8.1 39 37-78 4-48 (300)
292 PF15397 DUF4618: Domain of un 50.0 2.3E+02 0.005 26.8 11.4 47 132-178 62-108 (258)
293 PF12352 V-SNARE_C: Snare regi 50.0 92 0.002 22.2 7.0 25 159-183 16-40 (66)
294 KOG2196 Nuclear porin [Nuclear 49.9 1.1E+02 0.0023 29.0 8.4 70 139-208 84-156 (254)
295 TIGR00414 serS seryl-tRNA synt 49.8 89 0.0019 30.7 8.3 33 188-220 71-103 (418)
296 COG0598 CorA Mg2+ and Co2+ tra 49.5 1.7E+02 0.0037 27.4 9.8 72 135-206 182-254 (322)
297 PF04102 SlyX: SlyX; InterPro 49.4 82 0.0018 23.4 6.3 44 148-191 8-51 (69)
298 PRK11085 magnesium/nickel/coba 49.4 2.1E+02 0.0045 27.4 10.5 84 122-205 142-240 (316)
299 PF08580 KAR9: Yeast cortical 49.4 77 0.0017 33.5 8.2 44 111-154 12-57 (683)
300 PF04778 LMP: LMP repeated reg 49.3 1.8E+02 0.0039 25.7 9.2 81 132-212 6-95 (157)
301 PF05377 FlaC_arch: Flagella a 49.1 1.1E+02 0.0023 22.7 6.7 14 176-189 18-31 (55)
302 PRK15422 septal ring assembly 49.0 1.3E+02 0.0029 23.8 8.3 51 155-205 8-58 (79)
303 KOG0976 Rho/Rac1-interacting s 49.0 2.7E+02 0.0059 31.0 12.1 94 128-221 279-372 (1265)
304 cd07625 BAR_Vps17p The Bin/Amp 48.9 2.2E+02 0.0047 26.2 10.6 72 117-194 44-120 (230)
305 PF04108 APG17: Autophagy prot 48.9 2.7E+02 0.0059 27.3 13.3 32 113-144 197-228 (412)
306 cd07630 BAR_SNX_like The Bin/A 48.6 1.6E+02 0.0035 26.2 9.1 81 115-195 28-109 (198)
307 PRK08027 flgL flagellar hook-a 48.6 2.4E+02 0.0052 26.5 11.8 22 53-74 105-127 (317)
308 KOG3091 Nuclear pore complex, 48.3 84 0.0018 32.4 8.0 66 147-212 337-402 (508)
309 PRK00846 hypothetical protein; 48.2 1.3E+02 0.0028 23.5 7.4 43 148-190 17-59 (77)
310 PHA03395 p10 fibrous body prot 48.2 83 0.0018 25.3 6.4 21 126-146 11-31 (87)
311 PF04012 PspA_IM30: PspA/IM30 48.1 1.9E+02 0.0041 25.3 12.2 41 170-210 96-136 (221)
312 PRK13169 DNA replication intia 47.9 1.1E+02 0.0024 25.3 7.4 33 120-152 2-34 (110)
313 PRK12805 flagellin; Provisiona 47.7 2.3E+02 0.005 26.2 11.5 30 53-82 105-138 (287)
314 PF04111 APG6: Autophagy prote 47.6 2.5E+02 0.0055 26.6 11.4 80 140-219 53-132 (314)
315 PF05667 DUF812: Protein of un 47.6 1.8E+02 0.0038 30.4 10.4 29 178-206 504-532 (594)
316 PRK11032 hypothetical protein; 47.5 70 0.0015 28.1 6.5 86 135-223 12-120 (160)
317 PF06825 HSBP1: Heat shock fac 47.5 64 0.0014 23.6 5.3 29 135-163 12-40 (54)
318 PF03233 Cauli_AT: Aphid trans 47.0 1.4E+02 0.0031 26.5 8.3 35 171-209 124-158 (163)
319 PRK01156 chromosome segregatio 47.0 2.6E+02 0.0056 29.6 11.7 26 134-159 163-188 (895)
320 PF04728 LPP: Lipoprotein leuc 46.9 1.2E+02 0.0025 22.5 7.1 16 176-191 14-29 (56)
321 PF13094 CENP-Q: CENP-Q, a CEN 46.5 1.4E+02 0.003 25.1 8.0 63 139-208 22-84 (160)
322 COG5143 SNC1 Synaptobrevin/VAM 46.4 1E+02 0.0023 27.9 7.5 56 131-186 127-185 (190)
323 PF15290 Syntaphilin: Golgi-lo 46.3 1.1E+02 0.0024 29.5 8.1 29 176-204 114-142 (305)
324 KOG0996 Structural maintenance 46.0 3E+02 0.0065 31.5 12.2 106 124-233 512-625 (1293)
325 KOG0240 Kinesin (SMY1 subfamil 46.0 2.7E+02 0.0059 29.4 11.3 84 121-208 416-499 (607)
326 PF10392 COG5: Golgi transport 45.9 1.7E+02 0.0037 24.1 11.7 31 125-155 25-55 (132)
327 PF06705 SF-assemblin: SF-asse 45.7 2.2E+02 0.0049 25.6 9.7 67 124-190 72-139 (247)
328 KOG0161 Myosin class II heavy 45.7 3.1E+02 0.0066 32.9 12.7 46 116-161 898-946 (1930)
329 COG1579 Zn-ribbon protein, pos 45.7 2.6E+02 0.0056 26.1 12.3 14 147-160 62-75 (239)
330 KOG2264 Exostosin EXT1L [Signa 45.6 1.4E+02 0.003 31.9 9.1 44 143-186 99-142 (907)
331 KOG4559 Uncharacterized conser 45.5 86 0.0019 26.2 6.3 50 122-171 57-106 (120)
332 PRK09343 prefoldin subunit bet 45.3 80 0.0017 25.9 6.2 19 121-139 66-84 (121)
333 PF08614 ATG16: Autophagy prot 45.2 1.9E+02 0.0042 25.1 9.0 52 140-191 119-170 (194)
334 PRK10361 DNA recombination pro 45.2 3.6E+02 0.0078 27.6 12.5 15 136-150 39-53 (475)
335 PRK11091 aerobic respiration c 45.0 1.4E+02 0.0031 30.5 9.2 6 170-175 136-141 (779)
336 COG5185 HEC1 Protein involved 44.7 2.8E+02 0.0061 29.0 11.0 92 128-220 273-374 (622)
337 PF06248 Zw10: Centromere/kine 44.6 2.6E+02 0.0057 28.4 11.0 74 125-199 28-103 (593)
338 KOG4674 Uncharacterized conser 44.5 2E+02 0.0043 34.1 10.9 82 128-209 800-888 (1822)
339 PRK04654 sec-independent trans 44.3 2.1E+02 0.0045 26.5 9.2 33 122-154 23-55 (214)
340 PLN02320 seryl-tRNA synthetase 44.1 1.2E+02 0.0026 31.1 8.4 95 107-210 62-161 (502)
341 KOG0809 SNARE protein TLG2/Syn 44.1 2.5E+02 0.0055 27.3 10.1 104 120-223 133-273 (305)
342 PF04977 DivIC: Septum formati 43.9 93 0.002 22.4 5.8 14 150-163 23-36 (80)
343 KOG2391 Vacuolar sorting prote 43.8 1.6E+02 0.0035 29.2 8.9 16 32-47 122-137 (365)
344 PF10191 COG7: Golgi complex c 43.7 2.2E+02 0.0049 30.3 10.7 65 125-189 37-101 (766)
345 PF12761 End3: Actin cytoskele 43.7 1E+02 0.0022 28.0 7.1 95 98-197 74-185 (195)
346 PF07106 TBPIP: Tat binding pr 43.5 86 0.0019 26.6 6.4 21 186-206 116-136 (169)
347 KOG0239 Kinesin (KAR3 subfamil 43.5 4.3E+02 0.0093 28.1 12.6 29 198-227 288-316 (670)
348 KOG1029 Endocytic adaptor prot 43.3 72 0.0016 35.0 6.9 43 131-173 438-480 (1118)
349 PF12777 MT: Microtubule-bindi 43.2 3E+02 0.0065 26.2 10.8 62 153-214 223-284 (344)
350 PRK10807 paraquat-inducible pr 43.1 92 0.002 31.9 7.5 39 123-161 421-460 (547)
351 PRK06696 uridine kinase; Valid 43.0 24 0.00052 30.8 3.0 34 59-92 4-39 (223)
352 KOG0804 Cytoplasmic Zn-finger 42.8 1.9E+02 0.0042 29.7 9.5 55 129-183 367-421 (493)
353 PF14257 DUF4349: Domain of un 42.7 1.1E+02 0.0024 27.6 7.3 29 169-197 166-194 (262)
354 COG1463 Ttg2C ABC-type transpo 42.6 2.5E+02 0.0054 26.8 10.0 7 216-222 270-276 (359)
355 PF03961 DUF342: Protein of un 42.6 1.5E+02 0.0032 29.2 8.6 11 74-85 285-295 (451)
356 TIGR02680 conserved hypothetic 42.6 5E+02 0.011 29.6 13.6 43 167-209 923-965 (1353)
357 TIGR00383 corA magnesium Mg(2+ 42.5 2.1E+02 0.0045 26.1 9.1 84 123-206 146-243 (318)
358 PF07798 DUF1640: Protein of u 42.5 2.2E+02 0.0048 24.5 10.8 19 194-212 121-139 (177)
359 PF04012 PspA_IM30: PspA/IM30 42.5 2.3E+02 0.0051 24.7 9.3 39 124-162 96-137 (221)
360 PRK04863 mukB cell division pr 42.3 5.1E+02 0.011 30.2 13.7 19 55-73 232-251 (1486)
361 PRK09110 flagellar motor prote 42.3 1.4E+02 0.0029 28.3 8.0 88 97-186 10-106 (283)
362 PRK10869 recombination and rep 41.9 1.4E+02 0.003 30.5 8.6 108 112-223 241-364 (553)
363 COG5665 NOT5 CCR4-NOT transcri 41.8 83 0.0018 31.9 6.7 43 124-172 117-159 (548)
364 PF05055 DUF677: Protein of un 41.7 1.7E+02 0.0036 28.4 8.7 25 184-208 293-317 (336)
365 KOG2991 Splicing regulator [RN 41.6 1.6E+02 0.0035 28.5 8.3 83 150-232 235-317 (330)
366 KOG2211 Predicted Golgi transp 41.6 1.8E+02 0.0039 31.4 9.4 84 108-196 53-145 (797)
367 PRK04098 sec-independent trans 41.4 2.5E+02 0.0054 24.8 9.5 53 120-172 39-95 (158)
368 COG0497 RecN ATPase involved i 41.1 1.4E+02 0.003 31.2 8.4 113 112-224 242-366 (557)
369 KOG0976 Rho/Rac1-interacting s 41.0 3.5E+02 0.0076 30.2 11.4 74 123-203 110-186 (1265)
370 PRK08073 flgL flagellar hook-a 41.0 2.9E+02 0.0063 25.4 14.0 21 54-74 106-127 (287)
371 PF05508 Ran-binding: RanGTP-b 41.0 1.7E+02 0.0038 28.3 8.5 112 117-233 14-159 (302)
372 PRK13729 conjugal transfer pil 40.9 54 0.0012 33.5 5.4 18 178-195 103-120 (475)
373 PF14182 YgaB: YgaB-like prote 40.9 1.8E+02 0.004 23.0 8.3 47 151-197 14-65 (79)
374 KOG2196 Nuclear porin [Nuclear 40.8 1.6E+02 0.0035 27.9 8.1 35 128-162 125-159 (254)
375 PRK13169 DNA replication intia 40.7 69 0.0015 26.4 5.1 54 146-199 3-56 (110)
376 PLN03094 Substrate binding sub 40.6 1E+02 0.0023 30.3 7.2 37 132-168 306-344 (370)
377 PF10174 Cast: RIM-binding pro 40.5 3.5E+02 0.0076 29.3 11.5 83 124-206 313-405 (775)
378 COG0497 RecN ATPase involved i 40.3 2.1E+02 0.0045 29.9 9.5 91 123-213 266-362 (557)
379 cd07647 F-BAR_PSTPIP The F-BAR 40.3 2.7E+02 0.0059 24.9 11.5 40 117-156 97-136 (239)
380 PRK07739 flgK flagellar hook-a 40.2 2.5E+02 0.0054 28.3 9.9 43 119-161 139-181 (507)
381 PRK15396 murein lipoprotein; P 40.2 1.1E+02 0.0023 23.9 5.9 8 211-218 64-71 (78)
382 PF06013 WXG100: Proteins of 1 40.2 1.3E+02 0.0028 21.1 9.7 25 132-156 13-37 (86)
383 PF09763 Sec3_C: Exocyst compl 40.0 1.9E+02 0.0041 30.0 9.3 60 140-199 12-71 (701)
384 PLN02320 seryl-tRNA synthetase 39.9 1.3E+02 0.0028 30.9 7.9 15 140-154 110-124 (502)
385 TIGR03007 pepcterm_ChnLen poly 39.7 1.7E+02 0.0037 28.5 8.6 31 121-151 156-186 (498)
386 PRK08913 flgL flagellar hook-a 39.7 3E+02 0.0064 25.1 15.0 21 53-73 105-126 (301)
387 COG4980 GvpP Gas vesicle prote 39.7 2.3E+02 0.0049 23.8 9.5 24 178-201 89-112 (115)
388 KOG0018 Structural maintenance 39.6 2.5E+02 0.0054 31.7 10.4 85 113-202 668-755 (1141)
389 PHA03386 P10 fibrous body prot 39.4 1E+02 0.0023 25.1 5.8 37 126-163 12-48 (94)
390 PRK06665 flgK flagellar hook-a 39.4 2.5E+02 0.0053 29.3 10.0 41 119-159 139-179 (627)
391 cd00024 CHROMO Chromatin organ 39.3 23 0.00049 23.8 1.8 24 104-127 22-45 (55)
392 PRK11020 hypothetical protein; 39.2 1.2E+02 0.0026 25.7 6.3 21 191-211 36-56 (118)
393 PLN03223 Polycystin cation cha 39.1 1.6E+02 0.0035 34.2 9.0 92 120-216 767-860 (1634)
394 KOG0995 Centromere-associated 39.0 1.9E+02 0.0041 30.4 8.9 55 149-203 313-370 (581)
395 PF06013 WXG100: Proteins of 1 39.0 1.3E+02 0.0029 20.9 10.3 27 135-161 9-35 (86)
396 PF13747 DUF4164: Domain of un 38.9 1.9E+02 0.0042 22.7 10.1 48 169-216 36-83 (89)
397 PF07957 DUF3294: Protein of u 38.8 1.3E+02 0.0028 27.9 7.0 34 145-178 5-38 (216)
398 PRK09458 pspB phage shock prot 38.8 22 0.00048 27.8 1.9 44 116-162 24-67 (75)
399 cd01406 SIR2-like Sir2-like: P 38.8 41 0.00089 29.7 3.8 33 10-47 1-33 (242)
400 PF05802 EspB: Enterobacterial 38.7 3.3E+02 0.0072 26.5 9.9 72 131-205 137-208 (317)
401 PF02181 FH2: Formin Homology 38.6 1.7E+02 0.0037 27.4 8.1 39 187-225 310-348 (370)
402 PRK07191 flgK flagellar hook-a 38.3 2.8E+02 0.0061 27.5 9.9 37 119-155 127-163 (456)
403 cd07624 BAR_SNX7_30 The Bin/Am 38.2 2.6E+02 0.0057 24.5 8.7 72 148-219 18-89 (200)
404 PF10158 LOH1CR12: Tumour supp 38.2 2.5E+02 0.0053 23.8 11.0 27 174-200 89-115 (131)
405 COG2096 cob(I)alamin adenosylt 38.1 69 0.0015 28.9 5.1 63 135-206 38-101 (184)
406 PF10334 DUF2421: Protein of u 38.1 2.9E+02 0.0063 24.6 11.8 115 121-235 11-156 (229)
407 PF12329 TMF_DNA_bd: TATA elem 37.9 1.8E+02 0.0039 22.1 7.4 36 156-191 24-59 (74)
408 PRK00409 recombination and DNA 37.9 2.5E+02 0.0054 30.1 9.9 132 31-170 128-275 (782)
409 PF05266 DUF724: Protein of un 37.8 3E+02 0.0064 24.6 10.7 50 142-191 129-178 (190)
410 PF01601 Corona_S2: Coronaviru 37.7 1.2E+02 0.0025 32.1 7.3 82 123-225 256-340 (610)
411 PF02520 DUF148: Domain of unk 37.7 1.8E+02 0.0038 23.1 6.9 13 119-131 29-41 (113)
412 PF06825 HSBP1: Heat shock fac 37.7 1.3E+02 0.0028 22.0 5.6 36 128-163 12-47 (54)
413 PRK10869 recombination and rep 37.7 2.5E+02 0.0053 28.7 9.6 44 122-165 264-310 (553)
414 KOG0963 Transcription factor/C 37.7 3.9E+02 0.0085 28.4 11.0 77 140-216 185-272 (629)
415 COG4842 Uncharacterized protei 37.7 2E+02 0.0043 22.6 10.8 79 126-204 10-93 (97)
416 cd01107 HTH_BmrR Helix-Turn-He 37.5 76 0.0017 25.0 4.8 14 107-120 55-68 (108)
417 TIGR02977 phageshock_pspA phag 37.4 3E+02 0.0065 24.5 10.5 89 120-212 93-185 (219)
418 PF10146 zf-C4H2: Zinc finger- 37.4 3.3E+02 0.0072 25.0 12.4 11 184-194 58-68 (230)
419 KOG0964 Structural maintenance 37.2 4.8E+02 0.01 29.6 11.9 98 120-217 665-765 (1200)
420 PF03938 OmpH: Outer membrane 37.2 2.3E+02 0.005 23.1 9.6 64 127-190 33-105 (158)
421 COG0172 SerS Seryl-tRNA synthe 37.1 3.3E+02 0.0071 27.6 10.1 65 141-208 33-97 (429)
422 PF07544 Med9: RNA polymerase 36.9 78 0.0017 24.4 4.6 54 131-185 26-79 (83)
423 PHA01750 hypothetical protein 36.8 1.1E+02 0.0024 23.8 5.3 15 150-164 41-55 (75)
424 COG4064 MtrG Tetrahydromethano 36.8 1.4E+02 0.003 23.4 5.8 42 147-198 18-60 (75)
425 KOG0994 Extracellular matrix g 36.7 4.9E+02 0.011 30.4 12.0 11 117-127 1534-1544(1758)
426 PLN02678 seryl-tRNA synthetase 36.7 3.9E+02 0.0085 26.9 10.7 37 186-222 71-107 (448)
427 TIGR01010 BexC_CtrB_KpsE polys 36.7 3.7E+02 0.0079 25.3 11.4 85 120-204 164-260 (362)
428 PF15619 Lebercilin: Ciliary p 36.6 3.1E+02 0.0067 24.5 9.6 33 172-204 157-189 (194)
429 PF05911 DUF869: Plant protein 36.5 4.2E+02 0.0091 28.8 11.3 89 115-207 599-687 (769)
430 PF04124 Dor1: Dor1-like famil 36.5 2.3E+02 0.005 26.8 8.6 64 140-206 10-73 (338)
431 KOG2911 Uncharacterized conser 36.5 4.3E+02 0.0094 26.9 10.8 84 123-207 237-355 (439)
432 PF07851 TMPIT: TMPIT-like pro 36.4 2.4E+02 0.0052 27.6 8.8 30 120-149 19-48 (330)
433 PF09278 MerR-DNA-bind: MerR, 36.3 1.3E+02 0.0028 21.0 5.4 28 143-170 35-62 (65)
434 COG1511 Predicted membrane pro 36.2 4.8E+02 0.01 27.8 11.7 104 120-223 145-257 (780)
435 PF02388 FemAB: FemAB family; 36.1 61 0.0013 31.5 4.8 15 125-139 241-255 (406)
436 KOG4302 Microtubule-associated 36.0 5.7E+02 0.012 27.4 13.6 101 130-231 100-205 (660)
437 PF11802 CENP-K: Centromere-as 36.0 4E+02 0.0086 25.5 10.4 127 56-224 55-182 (268)
438 PF04871 Uso1_p115_C: Uso1 / p 35.9 2.7E+02 0.0058 23.5 10.4 69 136-204 26-102 (136)
439 TIGR02977 phageshock_pspA phag 35.8 3.2E+02 0.0069 24.3 12.2 40 171-210 98-137 (219)
440 KOG3595 Dyneins, heavy chain [ 35.8 4.1E+02 0.0088 30.5 11.6 21 112-132 893-913 (1395)
441 PF07160 DUF1395: Protein of u 35.8 1.5E+02 0.0034 27.2 7.2 27 177-203 20-46 (243)
442 PRK11115 transcriptional regul 35.6 3E+02 0.0064 23.9 9.3 47 118-164 19-65 (236)
443 PLN03184 chloroplast Hsp70; Pr 35.5 3.4E+02 0.0073 28.4 10.3 69 137-207 559-632 (673)
444 PF04108 APG17: Autophagy prot 35.5 3.4E+02 0.0074 26.6 9.9 22 213-234 289-310 (412)
445 KOG4677 Golgi integral membran 35.4 3.6E+02 0.0078 28.0 10.1 49 106-159 157-205 (554)
446 PRK00290 dnaK molecular chaper 35.3 3.4E+02 0.0073 27.8 10.1 70 138-209 521-595 (627)
447 PF13166 AAA_13: AAA domain 35.3 5E+02 0.011 26.5 13.3 35 174-208 419-453 (712)
448 PTZ00446 vacuolar sorting prot 35.2 2.6E+02 0.0056 25.2 8.3 76 123-202 99-182 (191)
449 KOG4331 Polytopic membrane pro 35.1 95 0.0021 33.9 6.3 28 123-150 183-210 (865)
450 PRK01026 tetrahydromethanopter 35.0 1.6E+02 0.0034 23.3 6.0 40 147-196 18-58 (77)
451 PRK09303 adaptive-response sen 35.0 1.1E+02 0.0024 28.7 6.2 20 165-184 157-176 (380)
452 COG4477 EzrA Negative regulato 34.9 5.1E+02 0.011 27.2 11.2 52 139-190 377-428 (570)
453 KOG0977 Nuclear envelope prote 34.9 3.1E+02 0.0068 28.6 9.8 48 174-221 122-169 (546)
454 PF05164 ZapA: Cell division p 34.8 1.3E+02 0.0029 22.2 5.5 14 148-161 76-89 (89)
455 PRK01156 chromosome segregatio 34.7 2.8E+02 0.0061 29.4 9.7 21 185-205 415-435 (895)
456 PRK11020 hypothetical protein; 34.6 42 0.00091 28.3 3.0 50 30-79 9-76 (118)
457 smart00298 CHROMO Chromatin or 34.6 39 0.00085 22.5 2.4 23 104-126 20-42 (55)
458 PF02346 Vac_Fusion: Chordopox 34.6 1.6E+02 0.0034 21.9 5.7 48 156-203 6-53 (57)
459 KOG4057 Uncharacterized conser 34.5 3.2E+02 0.0069 24.4 8.5 69 149-227 7-78 (180)
460 PRK05683 flgK flagellar hook-a 34.4 3.3E+02 0.0071 28.9 10.0 58 119-176 127-184 (676)
461 PF11471 Sugarporin_N: Maltopo 34.4 1.2E+02 0.0027 22.4 5.1 56 118-176 2-57 (60)
462 KOG0058 Peptide exporter, ABC 34.3 4.3E+02 0.0094 28.5 10.9 85 62-146 220-323 (716)
463 KOG3202 SNARE protein TLG1/Syn 34.3 2.4E+02 0.0052 26.2 8.1 40 134-177 153-192 (235)
464 PF12329 TMF_DNA_bd: TATA elem 34.2 2.1E+02 0.0045 21.7 8.6 67 156-222 3-69 (74)
465 PRK12803 flagellin; Provisiona 34.2 4.4E+02 0.0095 25.5 14.6 30 53-82 105-138 (335)
466 PRK09546 zntB zinc transporter 34.1 3.5E+02 0.0075 25.1 9.3 32 174-205 224-255 (324)
467 PHA03332 membrane glycoprotein 34.1 1.7E+02 0.0036 33.2 8.0 36 166-201 924-963 (1328)
468 COG4768 Uncharacterized protei 34.1 3.2E+02 0.0069 23.8 11.2 83 118-204 23-105 (139)
469 PF12325 TMF_TATA_bd: TATA ele 34.0 2.8E+02 0.006 23.1 10.1 13 195-207 88-100 (120)
470 PF05739 SNARE: SNARE domain; 34.0 1.6E+02 0.0035 20.4 8.2 41 151-191 18-58 (63)
471 PRK08870 flgL flagellar hook-a 34.0 3.5E+02 0.0076 26.1 9.6 21 54-74 106-127 (404)
472 TIGR02350 prok_dnaK chaperone 34.0 3.8E+02 0.0083 27.1 10.2 71 136-208 517-592 (595)
473 PF08693 SKG6: Transmembrane a 33.7 22 0.00047 24.7 1.0 20 90-109 16-37 (40)
474 PF11559 ADIP: Afadin- and alp 33.7 2.7E+02 0.0059 23.0 13.3 86 120-206 29-114 (151)
475 PF04678 DUF607: Protein of un 33.7 1.2E+02 0.0026 26.4 5.8 50 124-174 38-87 (180)
476 COG0172 SerS Seryl-tRNA synthe 33.6 1.9E+02 0.0041 29.2 7.8 65 141-205 33-101 (429)
477 KOG3990 Uncharacterized conser 33.6 1.2E+02 0.0026 29.1 6.1 58 147-205 228-286 (305)
478 KOG0384 Chromodomain-helicase 33.5 34 0.00073 38.8 2.8 80 105-224 229-308 (1373)
479 PF07195 FliD_C: Flagellar hoo 33.5 2E+02 0.0043 25.7 7.4 72 117-198 155-237 (239)
480 PTZ00446 vacuolar sorting prot 33.4 2.7E+02 0.0059 25.1 8.1 69 142-210 32-105 (191)
481 cd00089 HR1 Protein kinase C-r 33.2 1.8E+02 0.004 21.3 6.0 58 146-205 4-61 (72)
482 PF10211 Ax_dynein_light: Axon 33.1 3.4E+02 0.0074 23.9 11.0 84 114-205 106-189 (189)
483 PRK08147 flgK flagellar hook-a 33.1 3.7E+02 0.008 27.2 9.9 85 119-203 128-214 (547)
484 TIGR00293 prefoldin, archaeal 33.1 2.5E+02 0.0055 22.4 10.1 111 37-159 3-126 (126)
485 PF13805 Pil1: Eisosome compon 33.1 4.4E+02 0.0095 25.1 12.2 90 126-219 96-191 (271)
486 PHA02607 wac fibritin; Provisi 32.7 2.4E+02 0.0052 28.8 8.4 115 123-237 42-164 (454)
487 TIGR01834 PHA_synth_III_E poly 32.7 3.1E+02 0.0067 26.7 8.9 94 113-206 195-309 (320)
488 PF11460 DUF3007: Protein of u 32.6 34 0.00074 28.3 2.1 75 80-172 29-104 (104)
489 PLN03226 serine hydroxymethylt 32.6 4.8E+02 0.01 26.1 10.5 139 34-177 296-457 (475)
490 PF04065 Not3: Not1 N-terminal 32.5 1.7E+02 0.0036 27.1 6.8 71 120-191 123-209 (233)
491 cd04779 HTH_MerR-like_sg4 Heli 32.4 2.6E+02 0.0057 23.4 7.4 54 123-176 58-117 (134)
492 PF05278 PEARLI-4: Arabidopsis 32.2 4.5E+02 0.0099 25.1 10.5 79 132-210 181-259 (269)
493 PF15112 DUF4559: Domain of un 32.2 1.1E+02 0.0024 29.6 5.8 86 118-207 203-295 (307)
494 PF13815 Dzip-like_N: Iguana/D 32.2 2.4E+02 0.0051 22.8 7.0 47 135-181 71-117 (118)
495 KOG0977 Nuclear envelope prote 32.1 3.8E+02 0.0082 28.0 9.9 76 122-197 116-194 (546)
496 cd07623 BAR_SNX1_2 The Bin/Amp 32.0 3.7E+02 0.008 24.0 9.7 80 115-196 36-116 (224)
497 KOG0946 ER-Golgi vesicle-tethe 32.0 1.3E+02 0.0028 33.1 6.7 81 133-213 809-889 (970)
498 PRK04406 hypothetical protein; 31.9 2.3E+02 0.0051 21.6 7.8 56 136-191 3-58 (75)
499 KOG0933 Structural maintenance 31.9 5.5E+02 0.012 29.2 11.3 118 125-246 803-922 (1174)
500 TIGR03752 conj_TIGR03752 integ 31.9 4.4E+02 0.0096 27.1 10.1 81 125-208 58-138 (472)
No 1
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=100.00 E-value=7.8e-62 Score=401.74 Aligned_cols=126 Identities=50% Similarity=0.903 Sum_probs=123.5
Q ss_pred CCCCcceeehhhhhHhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025142 83 NSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 83 ~sGg~~s~~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~ 162 (257)
+|| ++++||+|||++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+
T Consensus 1 ~sg-~~~~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 1 GSG-GWSSLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred CCC-CccchhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 356 5889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 163 QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 163 ~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
|.|++++|++||+++++|+++|++|+++||++|++||+||++||+||
T Consensus 80 ~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 80 QKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998
No 2
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=96.40 E-value=0.01 Score=47.87 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=27.9
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
...|++.++.+++.+ =++++|..++..++++.+|++.+...+++++-..+.+
T Consensus 47 ~~~Rl~~lE~~l~~L-----Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 47 HDRRLQALETKLEHL-----PTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455555555555543 1155566666666666666666655555555444433
No 3
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=95.84 E-value=0.078 Score=50.84 Aligned_cols=10 Identities=50% Similarity=0.876 Sum_probs=6.8
Q ss_pred hhhheeeeEe
Q 025142 99 GALGYGYMWW 108 (257)
Q Consensus 99 GavGYgYmwW 108 (257)
.++|+||.||
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 5667777666
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.72 E-value=0.4 Score=43.11 Aligned_cols=98 Identities=15% Similarity=0.235 Sum_probs=71.0
Q ss_pred heeeeEe----ecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 102 GYGYMWW----KGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 102 GYgYmwW----KGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
||.++.- .|| +++=+-.+..++..-+..+-++|+.+.+.|+.+...+.+|-..+..++++....+..++++-.++
T Consensus 66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777763 378 45445556678999999999999999999999999999999999888888766655555555555
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 178 CDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
...+..++.-++.|+.+++.+..
T Consensus 145 -------~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 145 -------KNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555666665553
No 5
>PRK11637 AmiB activator; Provisional
Probab=95.32 E-value=0.23 Score=48.02 Aligned_cols=76 Identities=3% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 128 VSNLNKHLESVTEALT---VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 128 v~sv~kqLeqVsesL~---~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
...+-+++++....+. ..++++.+.|+.++.++++..+-...++.++.++..+++....++...+.-+..+...+.
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443 333334455555555555555555555555555555555555555554444444444443
No 6
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=95.31 E-value=0.15 Score=41.69 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=46.8
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
|||+|-+...=.+--.-|..+-..+... -...+|+.|..+.+.|-|-++..+.++. ..+.-++.|-....+
T Consensus 22 YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~k-------~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 22 YVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQK-------AQGKTLQLILKTLQS 92 (102)
T ss_dssp B-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 8999999866655555555555554433 3445555555555555544444444443 445666667777777
Q ss_pred hhhhhhhhhh
Q 025142 198 LDGKIDSLAD 207 (257)
Q Consensus 198 Le~Ki~~ie~ 207 (257)
+..|||+||.
T Consensus 93 inkRLD~~E~ 102 (102)
T PF01519_consen 93 INKRLDKMES 102 (102)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHhhccC
Confidence 7889988874
No 7
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=93.98 E-value=1.8 Score=35.62 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (257)
..|++.|..|++.++..+++..+-...+++++..++.
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666655554444444444444433
No 8
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.90 E-value=0.93 Score=44.37 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=65.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.+..++++....+...++.+...|+.+..++++...-...++.++..++..+.+++.+++.+...+..++.++..++.+-
T Consensus 192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l 271 (562)
T PHA02562 192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555566666677888888888888888889999999999999999998888888888888888777665
Q ss_pred hhHhHHHHHH
Q 025142 210 DITNIGMYLL 219 (257)
Q Consensus 210 d~tn~GV~~L 219 (257)
........++
T Consensus 272 ~~~~~~~~~~ 281 (562)
T PHA02562 272 EQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHh
Confidence 5544444433
No 9
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=93.55 E-value=1.7 Score=33.31 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=56.1
Q ss_pred hhHHHHHH---HHHHHHHHHHHHHhhHHhHHHHHHHHHHH--HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 134 HLESVTEA---LTVAKKHLTQRIQNLNDKVEKQNEISKDI--RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 134 qLeqVses---L~~tKkhLsqRI~~vd~kld~~~eis~~i--~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.|+++.+. +......|..+|+.+..+|+++.++.... -+.+. -...+.+|..+|.+++..+..|..|+..|+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444 44556789999999999999998866544 23444 778899999999999999999999998774
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.46 E-value=3.2 Score=37.93 Aligned_cols=93 Identities=13% Similarity=0.251 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025142 123 SMATAVSNLNKHLES-VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 123 ~ms~Av~sv~kqLeq-VsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
.|++|...+-.+-+. +...-..+......+++.+........+-....++++.+++..+.....++.+++.....||..
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~ 245 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQ 245 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhh
Confidence 388888888888774 4455567888889999999999999899999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHhHH
Q 025142 202 IDSLADKQDITNIG 215 (257)
Q Consensus 202 i~~ie~kQd~tn~G 215 (257)
|..++..-......
T Consensus 246 l~~le~~~~~~~~~ 259 (312)
T PF00038_consen 246 LRELEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99888655544433
No 11
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=0.28 Score=46.69 Aligned_cols=87 Identities=11% Similarity=0.260 Sum_probs=50.7
Q ss_pred cceeehhhhhHhhhhhee-eeEeecCCcchhHHHh--------hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025142 87 NATSLMIPAATLGALGYG-YMWWKGLSFADLMYVT--------RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 87 ~~s~~ivpaA~vGavGYg-YmwWKGws~sDlMfVT--------kr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd 157 (257)
.|--|++-|++.+++.|+ |-.||-|=+| +||.- |+.|.+=...+.|-+.++-+.++++++.++..-+.++
T Consensus 82 rwrdy~vmAvi~aGi~y~~y~~~K~YV~P-~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els 160 (300)
T KOG2629|consen 82 RWRDYFVMAVILAGIAYAAYRFVKSYVLP-RFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELS 160 (300)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777788885 8889998444 44443 4445555555555566666666666555555555555
Q ss_pred HhHHHHHHHHHHHHHHH
Q 025142 158 DKVEKQNEISKDIRKNV 174 (257)
Q Consensus 158 ~kld~~~eis~~i~~eV 174 (257)
..|+...+..-++....
T Consensus 161 ~~L~~l~~~~~~~s~~~ 177 (300)
T KOG2629|consen 161 RALASLKNTLVQLSRNI 177 (300)
T ss_pred HHHHHHHHHHHHhhhhH
Confidence 55554444433333333
No 12
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=93.10 E-value=1.6 Score=36.73 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 168 KDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 168 ~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
..+++++..+++|+..+..-|..+...+..||+
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444555555555555555555444444
No 13
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.05 E-value=2.2 Score=38.51 Aligned_cols=91 Identities=13% Similarity=0.186 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHh
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
++.++......+..+..+||+..+++-++..+-.++.++++..++.-.++...-+++.+..+..|+.+++.++..+.--.
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566667788888888887777777777777777777777777777777777777777777777775544333
Q ss_pred H----HHHHHHHHhh
Q 025142 214 I----GMYLLCNFVD 224 (257)
Q Consensus 214 ~----GV~~Lc~f~~ 224 (257)
- =+..|-+|++
T Consensus 105 p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 105 PLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHh
Confidence 3 3444455554
No 14
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.03 E-value=5.5 Score=38.84 Aligned_cols=50 Identities=20% Similarity=0.148 Sum_probs=29.5
Q ss_pred ccccceeeeccCCCc---hhHH-----HHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHh-hhh
Q 025142 17 GLGYTGTILVKDGKL---PELL-----RELQSLVERLSKSGEQDNFTDAIKDQLNRLKFEC-QRA 72 (257)
Q Consensus 17 GAG~~GSvl~k~GkL---sd~~-----g~lq~~lk~~~k~gd~~~~~d~L~aQV~~L~~El-~La 72 (257)
-+|++..|.+++|.. .|++ ..++.-+..++. ....+.+++.||..|+ .+.
T Consensus 66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~~~~~~~~~~------~~~~~~~~~~rL~a~~~~~~ 124 (457)
T TIGR01000 66 SNNAIKENYLKENKFVKKGDLLVVYDNGNEENQKQLLEQ------QLDNLKDQKKSLDTLKQSIE 124 (457)
T ss_pred CCcEEEEEEcCCCCEecCCCEEEEECchHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 348888888998864 3332 233333333332 2566777788887777 443
No 15
>PRK11637 AmiB activator; Provisional
Probab=92.96 E-value=1.6 Score=42.16 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=48.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 129 SNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 129 ~sv~kqLeqVsesL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+..-++|+++-..|...++.+. +++..+..++++...=...+.+++.+++.+++.+..+++.++.-+..++.+|+..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888887777776666 5566666665555555555555566666666666666666555555555555544
Q ss_pred h
Q 025142 206 A 206 (257)
Q Consensus 206 e 206 (257)
+
T Consensus 123 ~ 123 (428)
T PRK11637 123 E 123 (428)
T ss_pred H
Confidence 3
No 16
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.95 E-value=0.13 Score=49.47 Aligned_cols=86 Identities=14% Similarity=0.323 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 123 SMATAVSNLNKHLESVTEALTVAK---KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tK---khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
+|+.++.++...|..++..|+.-+ .+|+..|..+...+.+.......++..|..+..|+++.+.||-..--.|..||
T Consensus 67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence 444455555555555544444333 34556666666667777777777788888888888888888888888888888
Q ss_pred hhhhhhhhh
Q 025142 200 GKIDSLADK 208 (257)
Q Consensus 200 ~Ki~~ie~k 208 (257)
.|+..+|..
T Consensus 147 ~RV~~LEs~ 155 (326)
T PF04582_consen 147 SRVKALESG 155 (326)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 888877754
No 17
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.95 E-value=2.2 Score=36.17 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=49.5
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.|+.||+-|...|++...--+.+.+.+.++....+++..-++.+..--..+|.|++.++.+-
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 36778888888888888888888888888878888888888888888888888888877653
No 18
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=92.80 E-value=1.5 Score=34.57 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHH
Q 025142 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 138 VsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
|..+|.++-++|.+.|++|+..++.-.+..... .++...+..++.|-..+-+-..+.+.+..++|..|.-....+.
T Consensus 2 ~~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 2 VTYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788888888777666544433 5555666667777777777777778888888877776666666
Q ss_pred HHHHHh
Q 025142 218 LLCNFV 223 (257)
Q Consensus 218 ~Lc~f~ 223 (257)
...+-+
T Consensus 78 ~a~e~I 83 (89)
T PF13747_consen 78 SAIETI 83 (89)
T ss_pred HHHHHH
Confidence 555433
No 19
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=92.08 E-value=1.7 Score=33.27 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=13.3
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVA 145 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~t 145 (257)
+.+-+++....+.+.+.++.+.+.+...
T Consensus 18 ~~~l~~l~~~l~~~~~ti~~l~~~~~~i 45 (90)
T PF06103_consen 18 IKVLKKLKKTLDEVNKTIDTLQEQVDPI 45 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455555555444444444444444333
No 20
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=91.63 E-value=5.1 Score=33.83 Aligned_cols=51 Identities=18% Similarity=0.336 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 025142 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (257)
=|.+-+-|.-...||.+-.+.++....+|.+||-.+|..+....+...+-+
T Consensus 26 s~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erq 76 (131)
T PF10158_consen 26 SRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQ 76 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999999999999998776554444333
No 21
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=91.07 E-value=1.1 Score=44.10 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=27.6
Q ss_pred hhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025142 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 99 GavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~ 162 (257)
-++|+||-|| |. --.......-+.+..+|+.......+.+..|.+.+..++.++.+
T Consensus 48 la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~ 103 (390)
T PRK10920 48 LAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQ 103 (390)
T ss_pred HHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666766666 22 12222344555555566555555555555555444444444433
No 22
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.85 E-value=4.1 Score=40.65 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=66.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhH
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
++|+|....|++.. ++|....++..+...-.+..++++..+..-+.++..|++.++..+..++.++.-++..+ ..
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE 112 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 77877777776654 44555566666666667777788888888888888888888888888899988887655 77
Q ss_pred hHHHHHHHHHhhcccCCcc
Q 025142 213 NIGMYLLCNFVDGKKGRTT 231 (257)
Q Consensus 213 n~GV~~Lc~f~~~~~~~~~ 231 (257)
..++....--+-...++.|
T Consensus 113 qr~~La~~L~A~~r~g~~p 131 (420)
T COG4942 113 QRRRLAEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHHHHHHhccCCC
Confidence 7777665444433333333
No 23
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=90.77 E-value=8.9 Score=32.13 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHHh-hhhcC
Q 025142 54 FTDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El-~La~s 74 (257)
+...+...++.++.+. .|+-+
T Consensus 41 ~i~~~~~~i~~ia~qt~lLalN 62 (213)
T PF00015_consen 41 DISEILSLINEIAEQTNLLALN 62 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHhhhh
Confidence 4566667788888888 66654
No 24
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.73 E-value=2.7 Score=33.85 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHH
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
..|+..++-.+..++++++.+++.=+.-++-+.+|.+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444444444443
No 25
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.11 E-value=5.2 Score=38.89 Aligned_cols=82 Identities=15% Similarity=0.304 Sum_probs=46.8
Q ss_pred hhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH--------------HHHhhhh
Q 025142 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN--------------VEEACDD 180 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e--------------V~~v~~d 180 (257)
|=|=-=+.+++++...+..+|+.+++.+..+...+..|=..+..+++....-=+..+++ |++....
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~ 302 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRE 302 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34555566777777777777777777777776666666555555544444333333333 4444444
Q ss_pred HHHhhhhHHHHHHHHH
Q 025142 181 LFKVEHNLKDLQSMIY 196 (257)
Q Consensus 181 ~~~i~~dv~~v~~~V~ 196 (257)
+.+|..+++.+++-+.
T Consensus 303 L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 303 LAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544433
No 26
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.76 E-value=3.6 Score=38.74 Aligned_cols=68 Identities=16% Similarity=0.347 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 136 eqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....+|+.+..-+......+.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888899999999999988888888888888888888888888877766665555444
No 27
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=89.09 E-value=8.5 Score=33.17 Aligned_cols=83 Identities=14% Similarity=0.295 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH-HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK-QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~-~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
.++..+..+-.||..+.+.|......+..|++.+-.++++ ...+++.++.|++.+..++...-+.|-.+......|=..
T Consensus 35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a 114 (140)
T PF04513_consen 35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566777777788888888888777777777777666654 345667777888777777777776666666665555554
Q ss_pred hhhh
Q 025142 202 IDSL 205 (257)
Q Consensus 202 i~~i 205 (257)
+.-+
T Consensus 115 ln~l 118 (140)
T PF04513_consen 115 LNNL 118 (140)
T ss_pred HHHh
Confidence 4433
No 28
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=88.71 E-value=10 Score=30.89 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhHHHH
Q 025142 125 ATAVSNLNKHLESVT 139 (257)
Q Consensus 125 s~Av~sv~kqLeqVs 139 (257)
.+.+.++..+++.+.
T Consensus 4 ~~~~~~l~~~~~~l~ 18 (202)
T PF01442_consen 4 DDRLDSLSSRTEELE 18 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444333333
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.42 E-value=9.7 Score=37.35 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=20.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 157 NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 157 d~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
..++.+........++++.........+..++.+++..+..++.++.+
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~ 383 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Confidence 333333333333333444444444444445555554444444444443
No 30
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=88.33 E-value=8.1 Score=36.59 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh--------------
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE-------------- 185 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~-------------- 185 (257)
.-+.+-.=-.++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+...+..+..+.
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d 164 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD 164 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence 334444456899999999999999999999999999998877777766666655444333333332
Q ss_pred ----hhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 186 ----HNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 186 ----~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
.....+.+.+..||.|+..++-.+..+..+.--+
T Consensus 165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqi 202 (333)
T PF05816_consen 165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQI 202 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2346678889999999999998888888776543
No 31
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=87.94 E-value=4.4 Score=34.31 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
..||+.++..|..|+.+|+++..+
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~~ 131 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLANK 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999888765
No 32
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=87.82 E-value=15 Score=30.75 Aligned_cols=72 Identities=13% Similarity=0.264 Sum_probs=26.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 131 v~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
++.+-.+....+...-+++.+.++.+-..+++..+......+.+.+....+..|...++.+...+..+...+
T Consensus 87 LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~ 158 (213)
T PF00015_consen 87 LAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESA 158 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhH
Confidence 333333333333333333433433333333333333333333333333333333333333333333333333
No 33
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.79 E-value=12 Score=33.82 Aligned_cols=65 Identities=11% Similarity=0.254 Sum_probs=44.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH
Q 025142 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM 194 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (257)
...++..+--+.+...|..|.++++.+..+++....-.+..++.|...+..+..+..+++++..+
T Consensus 35 ~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 35 QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566677777788888877777777777777777777777777777777666666543
No 34
>PRK04406 hypothetical protein; Provisional
Probab=87.66 E-value=4 Score=31.35 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
+|...+.+||+.|..++--|...+....+.|++-+..+......++.+.+
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999888888888888887776666665555554433
No 35
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=87.40 E-value=1.8 Score=34.79 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=44.4
Q ss_pred hhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025142 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 99 GavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
.-+|.||+-.+- +..|+++|..|++.++..+++..+..+..+++++.+.
T Consensus 72 v~iG~g~~vE~~-------------------------------~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 72 VSIGSGYYVEKD-------------------------------AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred EEcCCCEEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999998875 5789999999999999999999888888888888776
Q ss_pred hhHH
Q 025142 179 DDLF 182 (257)
Q Consensus 179 ~d~~ 182 (257)
..+.
T Consensus 121 ~~l~ 124 (126)
T TIGR00293 121 QEAQ 124 (126)
T ss_pred HHHh
Confidence 6543
No 36
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=87.22 E-value=8.5 Score=29.40 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=27.8
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+++.++.+.+++|....=...+-++++++.+|+...-..++.+-+.|..++..+.++
T Consensus 31 ~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 31 VNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433344444445555555555555555555556555555544
No 37
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=87.16 E-value=6.8 Score=40.28 Aligned_cols=89 Identities=12% Similarity=0.287 Sum_probs=65.8
Q ss_pred cchhHHH----hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 025142 113 FADLMYV----TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 113 ~sDlMfV----Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (257)
++++.|. |||||...++ +.+=..+..+-+.=..+..+|+++...++++++....+++.+...+.+...+-.++
T Consensus 6 L~~~~~~nt~~aRr~LR~~iE---~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~ 82 (618)
T PF06419_consen 6 LSEFGFENTLEARRNLRSDIE---KRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA 82 (618)
T ss_pred hcccccCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555665 8999986554 55555666666667788889999999999999999999999988877777766666
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhh
Q 025142 189 KDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
..+ -.+...++.||..
T Consensus 83 ~~L-------~~~~~~~~~k~~l 98 (618)
T PF06419_consen 83 SEL-------REQKEELELKKKL 98 (618)
T ss_pred HHH-------HHHHHHHHHHHHH
Confidence 666 4455555555544
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.03 E-value=8.8 Score=34.57 Aligned_cols=114 Identities=10% Similarity=0.128 Sum_probs=66.9
Q ss_pred hhcCCCeEEEeCCCCCcceeehhhhhHhhhhheeeeEeecCCcchhHHH--hhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 025142 71 RASSGQIFVRNENSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYV--TRKSMATAVSNLNKHLESVTEALTVAKKH 148 (257)
Q Consensus 71 La~sr~iTVvn~~sGg~~s~~ivpaA~vGavGYgYmwWKGws~sDlMfV--Tkr~ms~Av~sv~kqLeqVsesL~~tKkh 148 (257)
+-+.-++||+....+++|+=.--+ =|-.||.+-|- +++-.=+ -=..+.+-++.+..+|++........+.+
T Consensus 50 l~~G~~v~vl~~~~~~~w~~Vr~~---~G~~GWV~~~~----Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~ 122 (206)
T PRK10884 50 LNAGEEVTLLQVNANTNYAQIRDS---KGRTAWIPLKQ----LSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAE 122 (206)
T ss_pred EcCCCEEEEEEEcCCCCEEEEEeC---CCCEEeEEHHH----hcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344557777764433334222111 14455444432 2222111 11346677777777888887777777778
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+.++++..+....+.++=-++.++++..++.++....-+.+.+
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777777777777777777777666555544444444
No 39
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=86.89 E-value=2.8 Score=37.71 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHHhhhhhhhh
Q 025142 184 VEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.+.|+..+.+-+..||.|++.
T Consensus 112 ~~~~v~~~~q~~~~l~~K~D~ 132 (189)
T TIGR02132 112 LKKDVTKLKQDIKSLDKKLDK 132 (189)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 40
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=86.66 E-value=9.5 Score=40.34 Aligned_cols=34 Identities=9% Similarity=0.286 Sum_probs=24.3
Q ss_pred HHHHHHHhhHHHHHH-HHHHHHHHHHHHHhhHHhH
Q 025142 127 AVSNLNKHLESVTEA-LTVAKKHLTQRIQNLNDKV 160 (257)
Q Consensus 127 Av~sv~kqLeqVses-L~~tKkhLsqRI~~vd~kl 160 (257)
..+++.+|++++-.. ...++.|+...|++.+..+
T Consensus 188 ~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 188 FLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 345666777777777 7778888888887777654
No 41
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=86.27 E-value=2.3 Score=44.03 Aligned_cols=33 Identities=9% Similarity=0.251 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (257)
...+.+.+++|+..++.++.+...-..+++..+
T Consensus 376 ~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~ 408 (656)
T PRK06975 376 AQASVHQLDSQFAQLDGKLADAQSAQQALEQQY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444444444433
No 42
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=86.16 E-value=9.4 Score=29.80 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHH----HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 144 VAKKHLTQRIQNLNDKVEKQNEISKD----IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~----i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.+.+++++|++.=...|.++++.++. ++++...=...+.++..|++.++..++.|..|+..
T Consensus 18 ~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 18 ALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666555543 34455555566777899999999999999998863
No 43
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=85.89 E-value=3.8 Score=31.91 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=9.4
Q ss_pred hhhhHHHHHHHHHhhhhhhhhh
Q 025142 184 VEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+..-++.+-..+.+|+.++..|
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 44
>PRK09039 hypothetical protein; Validated
Probab=85.81 E-value=13 Score=35.71 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh-------hhhhhhhhhhhhhhHhH
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC-------LDGKIDSLADKQDITNI 214 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~-------Le~Ki~~ie~kQd~tn~ 214 (257)
.......+..|+..+.++|++.+..+...+-+|..++..++.++.-+..++..+.. ...+|++++..=+.+..
T Consensus 107 ~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 107 LAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALA 186 (343)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344477888888888888888887776666655555555555554444444444 44455555444444433
Q ss_pred H-HHHHHHH
Q 025142 215 G-MYLLCNF 222 (257)
Q Consensus 215 G-V~~Lc~f 222 (257)
- +.-|-.|
T Consensus 187 ~~~~~l~~~ 195 (343)
T PRK09039 187 QRVQELNRY 195 (343)
T ss_pred HHHHHHHHh
Confidence 3 4444444
No 45
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=85.78 E-value=22 Score=30.65 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=21.3
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKH 148 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~tKkh 148 (257)
+|||..+.+..-..-..+.++-..+....|+
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~ 73 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKS 73 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888877766666666666666555444
No 46
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=85.48 E-value=6.9 Score=38.72 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=32.0
Q ss_pred ehhhhhHhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHhhHHhHHH
Q 025142 91 LMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAK--KHLTQRIQNLNDKVEK 162 (257)
Q Consensus 91 ~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tK--khLsqRI~~vd~kld~ 162 (257)
+++-|+.+|+.|| -||++- .-..+.-...+.+|++....+.+..+ +.|..+|.....+++.
T Consensus 39 all~aLgLGagg~--~f~QqQ---------~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~ 101 (391)
T COG2959 39 ALLLALGLGAGGY--YFGQQQ---------NVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDR 101 (391)
T ss_pred HHHHHHHhchhHH--HHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555 477763 33334444555556665555555555 5555555555444444
No 47
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.29 E-value=13 Score=41.03 Aligned_cols=92 Identities=12% Similarity=0.182 Sum_probs=71.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhH
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
+..++.-..+...-+...+++...+.++-+..+-.+.++++++.-.+.+..+..|++..+..+..++.++.+.+..-+-.
T Consensus 291 ~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~ 370 (1074)
T KOG0250|consen 291 KKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKL 370 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555666666676777777777778888888888889999999999999999999999999888888
Q ss_pred hHHHHHHHHHhh
Q 025142 213 NIGMYLLCNFVD 224 (257)
Q Consensus 213 n~GV~~Lc~f~~ 224 (257)
-.-+.+||.-++
T Consensus 371 k~~~d~l~k~I~ 382 (1074)
T KOG0250|consen 371 KKEVDRLEKQIA 382 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 888999998775
No 48
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.23 E-value=9.2 Score=37.20 Aligned_cols=91 Identities=16% Similarity=0.353 Sum_probs=51.3
Q ss_pred CcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----------hhHHhHHHHHHHHHHHH---HHHHHh
Q 025142 112 SFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ-----------NLNDKVEKQNEISKDIR---KNVEEA 177 (257)
Q Consensus 112 s~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~-----------~vd~kld~~~eis~~i~---~eV~~v 177 (257)
++...+-.||.-|..--+.+++.||.+.+ =-+||.++++ ++..-.++.++.++.+. .+..++
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~s----REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDISKTLEKIES----REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46777788999988888888877776543 2222222222 22222233333333332 445566
Q ss_pred hhhHHHhhhhHH-------------HHHHHHHhhhhhhhhhh
Q 025142 178 CDDLFKVEHNLK-------------DLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 178 ~~d~~~i~~dv~-------------~v~~~V~~Le~Ki~~ie 206 (257)
.+.++++..+|+ .|++++..|..-|..|+
T Consensus 307 seeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 307 SEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 666666655554 56777777766665554
No 49
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=85.23 E-value=16 Score=32.93 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=49.4
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
..||+.|..++.+...+.........++...+..+..|+......+..+|.|+..++..-.....-+.-|
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh
Confidence 4456666666666777777777777788888888888888888888888888887776555554444433
No 50
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=85.18 E-value=15 Score=28.14 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=9.5
Q ss_pred hHhHHHHHHHHHhhc
Q 025142 211 ITNIGMYLLCNFVDG 225 (257)
Q Consensus 211 ~tn~GV~~Lc~f~~~ 225 (257)
.....+..+|.|+..
T Consensus 86 ~~l~~l~~~~~~~e~ 100 (127)
T smart00502 86 QKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566677777763
No 51
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.09 E-value=24 Score=35.81 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHh
Q 025142 58 IKDQLNRLKFEC 69 (257)
Q Consensus 58 L~aQV~~L~~El 69 (257)
+..+++.|+++|
T Consensus 254 i~~~i~~l~~~i 265 (569)
T PRK04778 254 IEKEIQDLKEQI 265 (569)
T ss_pred hHHHHHHHHHHH
Confidence 444555555555
No 52
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=85.05 E-value=2.6 Score=31.40 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=29.0
Q ss_pred ehhhhhHhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Q 025142 91 LMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTV 144 (257)
Q Consensus 91 ~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~ 144 (257)
+++=+++-+++||.|-==+|- =||+.+.+....+..++++.++....
T Consensus 5 ~l~Ga~~Ga~~glL~aP~sG~-------e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPKSGK-------ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHhCCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344445666666555664 37778888887777777666655444
No 53
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.04 E-value=8.1 Score=32.20 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=53.3
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+|..+++-+-.+++..|.+.+... ...+|...++.+..+.+..-++-+.--++|.+++.|+..+.
T Consensus 45 ~r~~l~~Eiv~l~~~~e~~~~~~~-~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 45 ERDELREEIVKLMEENEELRALKK-EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 899999999999998888855444 44589999999999999999999998899988877666533
No 54
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=84.64 E-value=9.4 Score=26.83 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=31.0
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
+.|+.+..++.+.+++...|.++|.+=..-+.+|..+++.....+..=-.+|.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 56 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLK 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666655556665555555555444444444
No 55
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=84.44 E-value=24 Score=29.98 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHh-hhhcC
Q 025142 55 TDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 55 ~d~L~aQV~~L~~El-~La~s 74 (257)
......+++.+.+++ .|+.+
T Consensus 93 i~~~~~~i~~~a~~~~~la~n 113 (262)
T smart00283 93 IGEIVSVIDDIADQTNLLALN 113 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777 55544
No 56
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=84.41 E-value=18 Score=31.60 Aligned_cols=89 Identities=17% Similarity=0.339 Sum_probs=50.9
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh----hhHHHhhhhHHHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEAL-TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC----DDLFKVEHNLKDLQSM 194 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL-~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~----~d~~~i~~dv~~v~~~ 194 (257)
|-.++.+-++.....-+.+.+.+ ..+|..|.+.|..|-.++.+..+=++.+.+++...+ .|...+..|+..++..
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555555544444334444443 456888888888887776666555555555554443 3555566667777777
Q ss_pred HHhhhhhhhhhhhh
Q 025142 195 IYCLDGKIDSLADK 208 (257)
Q Consensus 195 V~~Le~Ki~~ie~k 208 (257)
+.+-.+.|..++..
T Consensus 158 l~~~~g~I~~L~~~ 171 (184)
T PF05791_consen 158 LAGENGDIPQLQKQ 171 (184)
T ss_dssp HHHTT--HHHHHHH
T ss_pred HhcccCCHHHHHHH
Confidence 76666666665543
No 57
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.34 E-value=20 Score=32.64 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=68.1
Q ss_pred HhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 025142 97 TLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (257)
Q Consensus 97 ~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (257)
=||..-|- ||||.=--..| ..-|..+-++|+.-+.. +..|.+.|++...-.++..|.+.++.++.+.
T Consensus 61 KIgtSnyy------wsfps~a~~~~---ks~~qeLe~~L~~~~qk----~~tl~e~~en~K~~~e~tEer~~el~kklns 127 (203)
T KOG3433|consen 61 KIGTSNYY------WSFPSEAICDR---KSVLQELESQLATGSQK----KATLGESIENRKAGREETEERTDELTKKLNS 127 (203)
T ss_pred Hhcccccc------cccchHHHHHH---HHHHHHHHHHHHHhhhh----HhHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34555553 78886433333 33344444444443332 2234445666666666667777666666666
Q ss_pred hhhhHHHhhhhHHHHHHH-------HHhhhhhhhhhhhhhhhHhHHHHHHHHHhhcccCCcccchhccccccccccC
Q 025142 177 ACDDLFKVEHNLKDLQSM-------IYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRTTESMQVGIVGYFLYDS 246 (257)
Q Consensus 177 v~~d~~~i~~dv~~v~~~-------V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~~~~~i~~~~~~~~ 246 (257)
++.+++.++-|+..+++. ...++.++. +.-++-..-|..|..|+-.+-+--|+. |.-+|..|.
T Consensus 128 lkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~---eaanrwtDnI~il~dy~~rkf~~e~nq----i~~~fgIPe 197 (203)
T KOG3433|consen 128 LKKILESLRWELAKIQETDPQVFEKKVHLEKTMA---EAANRWTDNIFILIDYLYRKFGLEPNQ----IRKEFGIPE 197 (203)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH---HHHhhhhhhHHHHHHHHHHhcCCCHHH----HhHhcCCCc
Confidence 666666666666655543 233333322 112222344556666665444444555 777777653
No 58
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=84.09 E-value=15 Score=35.86 Aligned_cols=99 Identities=13% Similarity=0.225 Sum_probs=68.9
Q ss_pred ecCCc-chhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 025142 109 KGLSF-ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN 187 (257)
Q Consensus 109 KGws~-sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d 187 (257)
|-|.+ -|=|---|+|...++..++-+|+.++..+..+-.++.+|=..+...|.-+..--+...++..++|+.-.+...+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45544 36788899999999999999999999999999999888888777777655444444455566666655555555
Q ss_pred HHH----HHHHHHhhhhhhhhhhh
Q 025142 188 LKD----LQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 188 v~~----v~~~V~~Le~Ki~~ie~ 207 (257)
+.+ +.+++..+|.+=.+||.
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 44445555554444443
No 59
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=83.70 E-value=16 Score=32.29 Aligned_cols=92 Identities=15% Similarity=0.251 Sum_probs=56.1
Q ss_pred eecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH-HHHh-hhhHHHh
Q 025142 108 WKGLSFADLMYVTRKSMATAVSNLNKHLESVTEAL-TVAKKHLTQRIQNLNDKVEKQNEISKDIRKN-VEEA-CDDLFKV 184 (257)
Q Consensus 108 WKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL-~~tKkhLsqRI~~vd~kld~~~eis~~i~~e-V~~v-~~d~~~i 184 (257)
|++| +.+|+ +|++-+|++++.+... ...+.-++.-++.+...+.+...-...+..+ |..+ ..+...+
T Consensus 14 w~~~---------~~sls-~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l 83 (165)
T PF09602_consen 14 WKQW---------SQSLS-LFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSL 83 (165)
T ss_pred HHHH---------HHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7887 34554 6888899998877544 3334456666666666666555554444444 5555 2344455
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.+.+.....-.+.|..+|..+--++
T Consensus 84 ~d~inE~t~k~~El~~~i~el~~~~ 108 (165)
T PF09602_consen 84 NDSINEWTDKLNELSAKIQELLLSP 108 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcch
Confidence 6666667777777777776554333
No 60
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=83.68 E-value=5.9 Score=34.86 Aligned_cols=62 Identities=10% Similarity=0.267 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.-..-|..+.+.|..++++..+.-+...++|-- =.|=+=+.+++.+...+..||.+|..+|.
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs--Yqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVS--YQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666666777777777777777888743 35567789999999999999999999764
No 61
>PRK14011 prefoldin subunit alpha; Provisional
Probab=83.36 E-value=3.8 Score=35.09 Aligned_cols=41 Identities=10% Similarity=0.298 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
++.+|+++|..||+.|++.+++..+..+.+.+++.+++..+
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888899888888888888888888887776543
No 62
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.21 E-value=5.7 Score=34.65 Aligned_cols=96 Identities=20% Similarity=0.326 Sum_probs=45.3
Q ss_pred CcchhHHHhhhhHHH---HHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025142 112 SFADLMYVTRKSMAT---AVSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 112 s~sDlMfVTkr~ms~---Av~sv~kqLeqVsesL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
++.+..+..+..|+. .+..+..+|-..+..+..-++.+.. +|..+...+....+=.+...+++.+....++.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766664 4677788888888888777766654 5555566666666666666788888888999999
Q ss_pred hhHHHHHHHHHhhhhhhhhhhh
Q 025142 186 HNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+++..++--...+|.|+..++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998873
No 63
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=83.21 E-value=4.4 Score=32.12 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
.+.|..|++.+..++++..+-...++++.+.++..+.+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777766666666666666555443
No 64
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=83.07 E-value=4.5 Score=32.67 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
+..|++.+..||+.+...+++..+....++++++.+...+++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557777788888777777777777777777666655544
No 65
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=82.95 E-value=9.7 Score=31.26 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhhhHHH-hhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 164 NEISKDIRKNVEEACDDLFK-VEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~-i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.++.+.+.+.|..+-.++.- ...|++.++..|..|+.+|..++.
T Consensus 73 ~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 73 DKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777766555432 458999999999999999988764
No 66
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=82.83 E-value=5.7 Score=29.68 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=32.6
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+..||..|..|+--+.+..+...+.|++-+..+ +.++..+..|..||.+++
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQI-------DRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 567888888888888777777777776665544 445555556666766655
No 67
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.32 E-value=30 Score=29.35 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=53.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+++..=-|+|++=...+..-=+.|+.|++.+...+|+..+-....++.+.+. +.-....++++..|..||..++..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~----~~~~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES----EKRKSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhHHHHHhhHHHHHHHHHHH
Confidence 4455556667776766666667777777777777776644444444444333 222233446777777777777776
Q ss_pred hhhhhhHhHHHHH
Q 025142 206 ADKQDITNIGMYL 218 (257)
Q Consensus 206 e~kQd~tn~GV~~ 218 (257)
+.+=.-|+.-+..
T Consensus 93 e~~L~e~~ekl~e 105 (143)
T PF12718_consen 93 EKKLKETTEKLRE 105 (143)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
No 68
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.28 E-value=25 Score=38.62 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=42.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHh
Q 025142 155 NLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 155 ~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
.+..+++.+.+--+..++++.++..++..+...+..+..-+..++.++++++..+.. ..|+...-.+.
T Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 510 (1163)
T COG1196 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA-SQGVRAVLEAL 510 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHH
Confidence 333334444444455555666666666677777777777777778888888877776 66666544443
No 69
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=81.53 E-value=3.7 Score=32.38 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=42.1
Q ss_pred CeEEEeCCCCCcceeehh-hhhHhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025142 76 QIFVRNENSGGNATSLMI-PAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (257)
Q Consensus 76 ~iTVvn~~sGg~~s~~iv-paA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~ 154 (257)
.-+.|+-|+|.-+.+-|. |-=++.-+|.||+-++- +..|++.|..||+
T Consensus 39 ~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s-------------------------------~~eA~~~l~~r~~ 87 (120)
T PF02996_consen 39 HEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMS-------------------------------LEEAIEFLKKRIK 87 (120)
T ss_dssp -EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEE-------------------------------HHHHHHHHHHHHH
T ss_pred ceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEec-------------------------------HHHHHHHHHHHHH
Confidence 445566666622222221 12234578999988874 3556666777777
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 025142 155 NLNDKVEKQNEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 155 ~vd~kld~~~eis~~i~~eV~~v~~d~~ 182 (257)
.+.+++++..+-.+.+++++..++..++
T Consensus 88 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 88 ELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666665555555555554444433
No 70
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=81.23 E-value=7 Score=30.03 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=40.8
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
+-+++-+.+...-++..+......-....+.+.+++++.=.+||=. +++|....+.=+. ..+..+..
T Consensus 2 ~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~~~L~-------~~r~kl~~ 68 (79)
T PF04380_consen 2 QDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQKAVLA-------RTREKLEA 68 (79)
T ss_pred CCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHHHHHH-------HHHHHHHH
Confidence 3344555565555555555555555556666666666655555532 2444433333333 34444555
Q ss_pred hhhhhhhhhh
Q 025142 198 LDGKIDSLAD 207 (257)
Q Consensus 198 Le~Ki~~ie~ 207 (257)
||.||..+|.
T Consensus 69 LEarl~~LE~ 78 (79)
T PF04380_consen 69 LEARLAALEA 78 (79)
T ss_pred HHHHHHHHhc
Confidence 5666666654
No 71
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=80.97 E-value=26 Score=27.77 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh---hHHHHHHHHHhhhhhhhhhhhh
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH---NLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~---dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
-|...-+..+.|...+++.......-.+.......+++.-+.+|.. .|..+..+|..|+.-..++|.|
T Consensus 25 LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 25 LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666555555555555555555544444443 6666777777776666666654
No 72
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=80.92 E-value=6.1 Score=38.05 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
..++.|..+-++||.|+.=--+--..|..|++.|..+.|+ -..-+--+++..++++++..++.|+..+-.
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~-~~~~~~~~~~~~~lr~~l~~~~~em~~L~~ 114 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA-LSLEPPSAEEMKELREELVDFHGEMVLLEN 114 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999998874 111122234566677777777777766543
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.68 E-value=52 Score=31.07 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=26.0
Q ss_pred hhHHHhhhhHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHhhHHhHH
Q 025142 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVA---KKHLTQRIQNLNDKVE 161 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVsesL~~t---KkhLsqRI~~vd~kld 161 (257)
+-+--....|.+-.+.+.++++.+.+.+... +..|..++.++....+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666666776666665544433 4445555555554433
No 74
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=80.49 E-value=9.7 Score=33.83 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=34.6
Q ss_pred HHhhhhHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025142 118 YVTRKSMATAVSNLNKHLE-SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLe-qVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
|+|+| |.--|+.-+.+-. ||...|+.+-.+|.+.+|.....|++. +++..+++. -++.+....+.++....
T Consensus 83 hAt~K-Lr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~e---I~~L~~~i~----~le~~~~~~k~LrnKa~ 154 (171)
T PF04799_consen 83 HATEK-LRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDE---IKQLEKEIQ----RLEEIQSKSKTLRNKAN 154 (171)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44443 3333333333333 777777888777777766655554422 223333332 23566777777888888
Q ss_pred hhhhhhhhhhh
Q 025142 197 CLDGKIDSLAD 207 (257)
Q Consensus 197 ~Le~Ki~~ie~ 207 (257)
-|+..|++.+.
T Consensus 155 ~L~~eL~~F~~ 165 (171)
T PF04799_consen 155 WLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888886553
No 75
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=80.48 E-value=13 Score=37.10 Aligned_cols=84 Identities=20% Similarity=0.395 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH------------HhhhhHHHhhhhHHHHHHHHHh--------h
Q 025142 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE------------EACDDLFKVEHNLKDLQSMIYC--------L 198 (257)
Q Consensus 139 sesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~------------~v~~d~~~i~~dv~~v~~~V~~--------L 198 (257)
-.-+..-|++|+.+-++|-.++|+.+.+.+.++++|. .+..|++....+++.+..-+.. +
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4457788999999999999999999999999998864 3445555555555555555543 4
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHH
Q 025142 199 DGKIDSLADKQDITNIGMYLLCNF 222 (257)
Q Consensus 199 e~Ki~~ie~kQd~tn~GV~~Lc~f 222 (257)
|.-|+.|..-|+|=+.=-.++-..
T Consensus 281 E~EL~~V~eEQqfL~~QedL~~DL 304 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLLSDL 304 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778888877775544443
No 76
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=80.33 E-value=17 Score=36.54 Aligned_cols=101 Identities=17% Similarity=0.360 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHhhHHHHHH------------HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH------------Hhh
Q 025142 123 SMATAVSNLNKHLESVTEA------------LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE------------EAC 178 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVses------------L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~------------~v~ 178 (257)
.+..-++++-.++.+|.++ +.+.|++|+.+-|+|-.|.|+.+.+.+.+|++|. .+.
T Consensus 177 ~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~ 256 (426)
T smart00806 177 EIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQ 256 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3445555666666666554 5677999999999999999999999999999874 334
Q ss_pred hhHHHhhhhHHHHHHHHH--------hhhhhhhhhhhhhhhHhHHHHHHHHHh
Q 025142 179 DDLFKVEHNLKDLQSMIY--------CLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~--------~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
.|++....|++.++.-+. .+|..|+.|..-|+|-|.==.++...-
T Consensus 257 kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~ 309 (426)
T smart00806 257 KELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLK 309 (426)
T ss_pred HHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444432 356778888888888776655555543
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=80.19 E-value=10 Score=35.20 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=31.4
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+|+.+|.+++....-.+.+++++..++..++.+..++..++..+..|+..+..++.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ 66 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLES 66 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555555555555555555554443
No 78
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=79.82 E-value=52 Score=32.42 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025142 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 140 esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
+.+...=.+++.-.+.+....+++.+...++...+.++...+.++....+
T Consensus 273 ~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~ 322 (553)
T PRK15048 273 DAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNAR 322 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444455555555544444444444444444444333333
No 79
>PRK00295 hypothetical protein; Provisional
Probab=79.79 E-value=10 Score=28.49 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=30.5
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM 194 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (257)
+..||..|..|+--+........+.|+.-+..+......++.+...
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888887777777777777777666555555444444333
No 80
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=79.68 E-value=15 Score=32.61 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhHHhHHHH---HHHHHHHHHHHHHhhhhHHHhhhh
Q 025142 144 VAKKHLTQRIQNLNDKVEKQ---NEISKDIRKNVEEACDDLFKVEHN 187 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~---~eis~~i~~eV~~v~~d~~~i~~d 187 (257)
.++++|...|+.+..+++.. ..-++.++++++.+..+|++|..+
T Consensus 120 ~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 120 QTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555443333 333455556666666666655443
No 81
>PRK02119 hypothetical protein; Provisional
Probab=79.65 E-value=12 Score=28.44 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=30.7
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
.+..||..|..|+--|........+.|++-+..+......+..+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA 50 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888877777777777777655555444444443
No 82
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.61 E-value=28 Score=35.36 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
-..++++..++...++.|..+...++..+..|.....+.
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eA 416 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEA 416 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555444433
No 83
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=79.60 E-value=7.1 Score=35.27 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=32.5
Q ss_pred HHHHhhHHhHHHHHHHHHH--HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 151 QRIQNLNDKVEKQNEISKD--IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~--i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.||.++....+...++-+. +-+|+-+++..|++++.|+++++.-...|+.+++
T Consensus 139 arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 139 ARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444332 3466777777778888888887777777777664
No 84
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=79.30 E-value=16 Score=30.22 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 137 qVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
++...|..+|.+|.+-=+.|.+..++..++-..+.++-..+
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l 69 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKL 69 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777766777777777777766666665554
No 85
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.22 E-value=34 Score=34.30 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=68.4
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLT-------QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLs-------qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
-|+-+-++....-++|..+...|++-+++|. .+.++++..+.|.+..-+++..+..+-+..++..+-+=..+.
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677888888888999999999999988887 566777777888888877777777777777777777777777
Q ss_pred HHHHhhhhhhhhhhhh
Q 025142 193 SMIYCLDGKIDSLADK 208 (257)
Q Consensus 193 ~~V~~Le~Ki~~ie~k 208 (257)
..+..+|..+.+..++
T Consensus 238 ~~Ias~e~~aA~~re~ 253 (420)
T COG4942 238 NEIASAEAAAAKAREA 253 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777655544443
No 86
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=79.18 E-value=48 Score=30.23 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=62.8
Q ss_pred chhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 114 ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 114 sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
+++|=....++.+ .+..++.|..++++.++++ +-++.++.+...|+..+.+=+.--+..+.--...+++..|-+++|+
T Consensus 102 ~~l~esl~~~i~~-~~~aa~~i~~~~~~~~~~~-~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fke 179 (202)
T TIGR03513 102 ATLMQSLGNGINN-FEGAAKTLAPMTDSYAQQK-KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKE 179 (202)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445445555555 6677788888899888887 7788899999998888777554444333333444666777777777
Q ss_pred HHHhhhhhhhhh
Q 025142 194 MIYCLDGKIDSL 205 (257)
Q Consensus 194 ~V~~Le~Ki~~i 205 (257)
=++.|-..|.++
T Consensus 180 Q~~kLa~NL~sL 191 (202)
T TIGR03513 180 EMEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHHH
Confidence 777777777755
No 87
>PRK09793 methyl-accepting protein IV; Provisional
Probab=78.72 E-value=57 Score=32.34 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=5.3
Q ss_pred cCCCCCccc
Q 025142 245 DSNEIPSVT 253 (257)
Q Consensus 245 ~~~e~~~~~ 253 (257)
+.+++|-|+
T Consensus 525 ~~~~~~~~~ 533 (533)
T PRK09793 525 QLQIAPVVS 533 (533)
T ss_pred cCccCCCCC
Confidence 556666654
No 88
>PRK02793 phi X174 lysis protein; Provisional
Probab=78.59 E-value=12 Score=28.36 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.6
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.+.+||..|..++--|........+.|++-+..+......+..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888887777777777777765555544444443
No 89
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=78.44 E-value=12 Score=29.31 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh---hhhHHHHHHHHHhhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV---EHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i---~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+..++++|..-|+.+.+.|++..+.... +..+=++| ..++..=++.|..++.+|..|
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~i-------ve~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRI-------VEKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666555333332 22222332 234444455555555555544
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.44 E-value=21 Score=36.81 Aligned_cols=60 Identities=20% Similarity=0.393 Sum_probs=31.9
Q ss_pred chhHHHhhhh--HHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q 025142 114 ADLMYVTRKS--MATAVSNLNKH---LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN 173 (257)
Q Consensus 114 sDlMfVTkr~--ms~Av~sv~kq---LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e 173 (257)
+||+.||-|. |.+-+...-|. |.+....|......|..|++.+...|....+-....+.+
T Consensus 129 ~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 129 SDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred cceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888665 33333333333 344445555555556666666666665544444443333
No 91
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=78.40 E-value=24 Score=34.00 Aligned_cols=109 Identities=15% Similarity=0.272 Sum_probs=59.7
Q ss_pred hhHhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q 025142 95 AATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLE-SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN 173 (257)
Q Consensus 95 aA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLe-qVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e 173 (257)
++++|+.||.|.++....+. .+-..++.-.+....+++ +....+....+....++..+..++.....=...++++
T Consensus 40 ~~alg~~~~~~~~~q~~~~~----~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~ 115 (372)
T PF04375_consen 40 ALALGAGGWYWQQQQLQQLQ----QQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQ 115 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999988753211 122233444444444444 4444555555555566666666665554444444554
Q ss_pred HHHhhhh---------HH----------HhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 174 VEEACDD---------LF----------KVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 174 V~~v~~d---------~~----------~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+..+... .+ .+.+|++.--.+.+.-+.+|.+++.
T Consensus 116 ~~~l~~~~~~dW~LaEaeyLlrlA~qrL~l~~Dv~~Al~lL~~AD~rLa~~~d 168 (372)
T PF04375_consen 116 LAALSQRSRDDWLLAEAEYLLRLANQRLQLEGDVQTALALLQSADQRLAELDD 168 (372)
T ss_pred HHHHhcCChHhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Confidence 4443221 11 1456666666666677777766653
No 92
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=78.33 E-value=44 Score=28.88 Aligned_cols=78 Identities=9% Similarity=0.247 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH--------HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ--------NEISKDIRKNVEEACDDLFKVEHNLKDLQSMI 195 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~--------~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V 195 (257)
+++..+.+-.|.-++...|+..+.-+..|+..++.++... .+.....-+.+..++ +.++.++..++..+
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq---~~~rneLtnlnsil 94 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQ---DTLRNELTNLNSIL 94 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4455555555555555555555555555554444444331 122333334444443 33445555666666
Q ss_pred Hhhhhhhhh
Q 025142 196 YCLDGKIDS 204 (257)
Q Consensus 196 ~~Le~Ki~~ 204 (257)
..|-..+.-
T Consensus 95 ~nL~ssvTN 103 (140)
T PF04513_consen 95 NNLTSSVTN 103 (140)
T ss_pred HHHHHHHhh
Confidence 665555553
No 93
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.21 E-value=51 Score=36.33 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=14.1
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 176 EACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
+.+.....+..++...+.....|+..+..++.+..
T Consensus 867 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~ 901 (1163)
T COG1196 867 ELEAEKEELEDELKELEEEKEELEEELRELESELA 901 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444443333
No 94
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=78.01 E-value=35 Score=30.94 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
.+....+.++++|......+..+| .+++.++..++....=....+++++.+..+...+..+.+..+.-...|+..|
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~----~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQK----QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666555555543 3344555555555555555566666666666666666666666666666666
Q ss_pred hhhhhh
Q 025142 203 DSLADK 208 (257)
Q Consensus 203 ~~ie~k 208 (257)
..+..+
T Consensus 97 ~~l~~~ 102 (264)
T PF06008_consen 97 QNLQDN 102 (264)
T ss_pred HHHHHH
Confidence 655544
No 95
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.91 E-value=27 Score=37.00 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=12.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHhHHHH
Q 025142 190 DLQSMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
.+++.-+.|..|++++.++|..-..-+.
T Consensus 590 ~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 590 SLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 96
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=77.87 E-value=24 Score=35.46 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=49.8
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.++..+-.++.+|.++-+.+++-+..-+.||+.+..||.++|+.-..|..|+.
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~ 66 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLK 66 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888889999999999999999999999999999999999999999999998
No 97
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=77.48 E-value=24 Score=36.28 Aligned_cols=95 Identities=14% Similarity=0.241 Sum_probs=61.7
Q ss_pred CcchhHHHhhhhHHHHH-----------HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh--------HHHHHHHHHHHHH
Q 025142 112 SFADLMYVTRKSMATAV-----------SNLNKHLESVTEALTVAKKHLTQRIQNLNDK--------VEKQNEISKDIRK 172 (257)
Q Consensus 112 s~sDlMfVTkr~ms~Av-----------~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k--------ld~~~eis~~i~~ 172 (257)
.-++.+.-+-++|+++. ..+.-++..|+..+.-..+.|..||..+... +++.....+.+..
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777653 3344455556666666677777777766543 5566666777777
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHH----hhhhhhhhhh
Q 025142 173 NVEEACDDLFKVEHNLKDLQSMIY----CLDGKIDSLA 206 (257)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~----~Le~Ki~~ie 206 (257)
...++++.++.+..||.+|..... .++.||+.-+
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~ 450 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEG 450 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHH
Confidence 777888888888888877766553 4455555433
No 98
>PRK00846 hypothetical protein; Provisional
Probab=77.32 E-value=19 Score=28.09 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
-..+.+||+.|..++--|...+....+.|+.-+..+.. ++..+.-|-.|+..++
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~-------L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGAR-------NAELIRHLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 45688999999999888888888888888776555555 4444444555555554
No 99
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.28 E-value=15 Score=28.72 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (257)
-..+|.+..+++.+-.+. ++++++|.
T Consensus 35 d~~~r~l~~~~e~lr~~r---N~~sk~I~ 60 (108)
T PF02403_consen 35 DQERRELQQELEELRAER---NELSKEIG 60 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---hHHHHHHH
Confidence 445566666666655554 34444443
No 100
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.28 E-value=54 Score=31.29 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHhhHHhHHHH----HHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTV---AKKHLTQRIQNLNDKVEKQ----NEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~---tKkhLsqRI~~vd~kld~~----~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
..-.|.+--+.+.++++.+.+.+.. -+..|...+..+..-.++. .+.-..+++++.+...+++....++..++
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~ 231 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELE 231 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666555544333 2333444444443333332 12333344555555555555555555555
Q ss_pred HHHHhhhhhhhhhhhhhhhHhHHHH
Q 025142 193 SMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 193 ~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
.-+..++.+|.....+..-.+.=|.
T Consensus 232 ~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 232 EELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544443333333
No 101
>PRK04325 hypothetical protein; Provisional
Probab=77.07 E-value=16 Score=27.85 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=29.5
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.+..||..|..|+--|...+....+.|++-+..+......+..+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888887777777777776655555444443333
No 102
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.06 E-value=38 Score=31.92 Aligned_cols=48 Identities=17% Similarity=0.343 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHH----HHHHHhhhhHHHhhhhHH
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIR----KNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~----~eV~~v~~d~~~i~~dv~ 189 (257)
|...+-.|..|-+.|..++....+....+. +++..++..+.....++.
T Consensus 175 l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 175 LDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544444332 334444444444444444
No 103
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=76.14 E-value=4.7 Score=39.00 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=22.3
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
+..|...+..+....-....+..+|.-++.|++..+-.|.+++..|..||....
T Consensus 104 S~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s 157 (326)
T PF04582_consen 104 SSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSS 157 (326)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCC
Confidence 344444444444445555555555555555555555555555555555555544
No 104
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.03 E-value=17 Score=28.22 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
...|.+||..|..++--|......+.+.|++-+-.+++.+.-++.+-..+..+
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34688999999999999988888888888887776666655555554433333
No 105
>PRK09039 hypothetical protein; Validated
Probab=76.00 E-value=58 Score=31.25 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=10.2
Q ss_pred chHHHHHHHHHHHHHh
Q 025142 54 FTDAIKDQLNRLKFEC 69 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El 69 (257)
..+.|.+||..|.+-+
T Consensus 54 eL~~L~~qIa~L~e~L 69 (343)
T PRK09039 54 ALDRLNSQIAELADLL 69 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666776666555
No 106
>PRK00736 hypothetical protein; Provisional
Probab=75.95 E-value=17 Score=27.32 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=28.5
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+..||+.|..|+--|....+...+.|+.-+..+..+...++.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888887777777777776655555444443333
No 107
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.36 E-value=21 Score=36.28 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025142 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 136 eqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
..+|+.|..--+++..+++.++.++.+..+....++++=..++..+.++..++..+++.|+
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777778888888888888888888888888888888888888888888777776664
No 108
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=75.15 E-value=27 Score=41.04 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=65.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 127 Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
++.-+-..+.+..+.+...||.+.+|++.....++....-.....+--..++.+++....|++..+.++..||.|+.+.+
T Consensus 1362 ~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~ 1441 (1930)
T KOG0161|consen 1362 WKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFE 1441 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555668888999999999999999998888888888777888889999999999999999999998887655
No 109
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=74.82 E-value=33 Score=38.13 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=34.9
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHH-HHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNV-EEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV-~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
|...+|+..-...|.+...+..++++. ..+..+++++..+++.|..-|+.||.-+.++..
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666555 555555555555555555555555555555543
No 110
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=74.69 E-value=19 Score=26.65 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
...++++.+.++++...-...|+.+ |..+...+++..++.+++.-||..+
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~~~---i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRKSL---IREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHhhccChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456677777777764444444444 5556678999999999999887665
No 111
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=74.33 E-value=9.8 Score=33.62 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhHH---hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 142 LTVAKKHLTQRIQNLND---KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~---kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+-.+-.|+++||+++.. +|.+..+.-.+|.+.|.+..++++.|++++..|
T Consensus 109 ~l~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 109 LLPTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555666665555 455555555666666666666666666655543
No 112
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.78 E-value=37 Score=25.73 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.|.+.+.-|..|+|.++.|+.......+.+..|=...-.-+..-..++..++.-++.|...+++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677778888888888888888877777777655555555556666777777777777666543
No 113
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.76 E-value=9.1 Score=28.26 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=6.0
Q ss_pred HHHHHHhhhhHHHhhh
Q 025142 171 RKNVEEACDDLFKVEH 186 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~ 186 (257)
|++..+++.+++.+..
T Consensus 20 k~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 20 KKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444333333333333
No 114
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.12 E-value=68 Score=28.52 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
.....++..|++.+..+++++++-.+.-++++.+.+..+..-..++.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777777777777777776666554
No 115
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.79 E-value=18 Score=35.65 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
+-..+|.+..+++++..+. ++++++|.... .-.++.+.+..+++.+.+-+..||.++..++.+-+.
T Consensus 33 ld~~~r~l~~~~~~lr~~r---n~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 33 LDEERRELQTELEELQAER---NALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888777664 56666665411 111244445555566666666666666666655443
No 116
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=72.53 E-value=4.6 Score=41.52 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=55.8
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL-------~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (257)
|-++|=.+|++.++++|..+.+.. ...=.++.+||+++++++|+...=.-.-+.|+-.+ +..+..-..+|
T Consensus 364 AD~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds~~ 443 (550)
T PF00509_consen 364 ADLKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDSNV 443 (550)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHHHH
Confidence 568999999999999999888754 33345789999999999999876666666664443 34444445556
Q ss_pred HHHHHHHH
Q 025142 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
.++++.|+
T Consensus 444 ~~L~ekvk 451 (550)
T PF00509_consen 444 NNLYEKVK 451 (550)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 117
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=72.43 E-value=61 Score=27.68 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=66.2
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH---HHHH----HHHHHHHH-HHhhhhHHHh
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK---QNEI----SKDIRKNV-EEACDDLFKV 184 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~---~~ei----s~~i~~eV-~~v~~d~~~i 184 (257)
+.|+|.=.-++..+-++.+-..|++++..=..+......=-+.+...+.. ...+ ++..++.. .....-+..+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~ 102 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67889989999999999999999998887777765554444444444322 1123 33333333 4444555667
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
-.-+..|+.+++.+..||.++|-+
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999988754
No 118
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.28 E-value=65 Score=34.21 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
+..|+..+..+ --.....++.++..|+..+-...++|.+-.+..+++...++..-+.+.+-++.+.+.=+.|..|++
T Consensus 541 L~~a~~vlree---Yi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 541 LSQATKVLREE---YIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554432 113356789999999999999999999999999999988888888888888888888888888887
Q ss_pred hh
Q 025142 204 SL 205 (257)
Q Consensus 204 ~i 205 (257)
.+
T Consensus 618 ~v 619 (717)
T PF10168_consen 618 RV 619 (717)
T ss_pred HH
Confidence 66
No 119
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=71.90 E-value=16 Score=28.88 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 025142 56 DAIKDQLNRLKFEC 69 (257)
Q Consensus 56 d~L~aQV~~L~~El 69 (257)
..|+.|.+.|..++
T Consensus 16 ~~l~~~~~~l~~~~ 29 (105)
T cd00632 16 QAYIVQRQKVEAQL 29 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555444
No 120
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=71.81 E-value=13 Score=31.69 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=8.2
Q ss_pred HhhhhheeeeEeec
Q 025142 97 TLGALGYGYMWWKG 110 (257)
Q Consensus 97 ~vGavGYgYmwWKG 110 (257)
+++++|-+|+||..
T Consensus 8 ~~a~~~~~~~~~~~ 21 (135)
T TIGR03495 8 GLLVAGLGWQSQRL 21 (135)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445556777775
No 121
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=71.78 E-value=44 Score=32.18 Aligned_cols=56 Identities=13% Similarity=0.255 Sum_probs=40.8
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.++.++|..++..+.++..-.+.-++-++.+... +...++.|..-|..||.||..+
T Consensus 332 ~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 332 AEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 3677777777777777666666666666666554 7778888888888888888765
No 122
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=71.71 E-value=11 Score=36.50 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=13.4
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 173 NVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.+.++...+......+..+.+.+..||+++-
T Consensus 159 ~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 159 RIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333333333334444445445555555443
No 123
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.59 E-value=45 Score=34.23 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=11.8
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
+.+++.++.....+++.++.-+..++.++.
T Consensus 437 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 437 LFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444333
No 124
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=71.28 E-value=78 Score=28.46 Aligned_cols=78 Identities=12% Similarity=0.252 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 123 SMATAVSNLNKHLESVTEALTVA---KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~t---KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
.|.+-...++.+|..+..+-..+ ..++..||..|..++.+..-=...-...|..+...+..+..++...+.....+.
T Consensus 145 eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 145 ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555554433333222 234444444444444444333333334444444444444444444444333333
Q ss_pred h
Q 025142 200 G 200 (257)
Q Consensus 200 ~ 200 (257)
.
T Consensus 225 ~ 225 (237)
T PF00261_consen 225 E 225 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 125
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=70.91 E-value=54 Score=30.02 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=61.4
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHHHHHH--HHHHHHHhhhhHHHhhhh
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKH---LTQRIQNLNDKVEKQNEISKD--IRKNVEEACDDLFKVEHN 187 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkh---LsqRI~~vd~kld~~~eis~~--i~~eV~~v~~d~~~i~~d 187 (257)
|....---+.++.+-+....++++++.+.+...|+. |.+||..+..+++........ .+..|...-++.+. .+.
T Consensus 86 LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa 164 (225)
T COG1842 86 LAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSA 164 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhh
Confidence 444444467788999999988888888887777654 567888888777765544333 33556666666555 444
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhh
Q 025142 188 LKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
+..+ .-++.|++++|..=+.
T Consensus 165 ~~~f----er~e~kiee~ea~a~~ 184 (225)
T COG1842 165 MAAF----ERMEEKIEEREARAEA 184 (225)
T ss_pred HHHH----HHHHHHHHHHHHHHHH
Confidence 4444 3447777777765443
No 126
>PRK03918 chromosome segregation protein; Provisional
Probab=70.72 E-value=70 Score=33.37 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=4.3
Q ss_pred HHHHhhHHhHH
Q 025142 151 QRIQNLNDKVE 161 (257)
Q Consensus 151 qRI~~vd~kld 161 (257)
.+|+.+..+++
T Consensus 640 ~~i~~l~~~~~ 650 (880)
T PRK03918 640 KRLEELRKELE 650 (880)
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 127
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=70.38 E-value=23 Score=26.37 Aligned_cols=15 Identities=7% Similarity=0.527 Sum_probs=9.6
Q ss_pred HHHHHHHhhHHhHHH
Q 025142 148 HLTQRIQNLNDKVEK 162 (257)
Q Consensus 148 hLsqRI~~vd~kld~ 162 (257)
++.+||.+++.++|+
T Consensus 3 ~i~e~l~~ie~~l~~ 17 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666665
No 128
>COG5283 Phage-related tail protein [Function unknown]
Probab=70.28 E-value=44 Score=37.62 Aligned_cols=110 Identities=12% Similarity=0.212 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
|-+++...++--...-+.+..||+-|+ .|.+.+-+.+++++..-+..++|+.|+-+-+...+.+.+.+..-....|.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444555443 58889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhH-------hHHHHHHHHHhhcccCCcccc
Q 025142 201 KIDSLADKQDIT-------NIGMYLLCNFVDGKKGRTTES 233 (257)
Q Consensus 201 Ki~~ie~kQd~t-------n~GV~~Lc~f~~~~~~~~~~~ 233 (257)
++.++-..++.| -.++-.+-..+...+..||+.
T Consensus 107 ~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ 146 (1213)
T COG5283 107 KLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQ 146 (1213)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 999999999877 456666666666667777764
No 129
>PRK02224 chromosome segregation protein; Provisional
Probab=70.15 E-value=1.2e+02 Score=31.86 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=14.3
Q ss_pred hhHHHHHHHHH-------HHHHHHHHHHhhHHhHHH
Q 025142 134 HLESVTEALTV-------AKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 134 qLeqVsesL~~-------tKkhLsqRI~~vd~kld~ 162 (257)
.++.+++.+.. .++.+.++++.+...|++
T Consensus 163 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 163 KLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 444555555555555444
No 130
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=69.94 E-value=32 Score=34.28 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=47.2
Q ss_pred HhhhhheeeeEeecCCcchhHHHhhhhH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH------HHHHHH
Q 025142 97 TLGALGYGYMWWKGLSFADLMYVTRKSM---ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVE------KQNEIS 167 (257)
Q Consensus 97 ~vGavGYgYmwWKGws~sDlMfVTkr~m---s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld------~~~eis 167 (257)
...+++++|. ---+|.|=+.-|++.+ ...++++.+|.+.+.+++..+++ +-++++++.++ +-..+.
T Consensus 93 ~~aaIi~~f~--GN~~~h~gV~~t~~si~~an~tv~~l~nqv~~l~~al~~t~~---~~L~~L~~il~~~~~~~~~~~~~ 167 (418)
T cd07912 93 CCAAIGVGLY--GNDETHDGVVQLTYSLRNANHTVAGIDNQTSDTEASLNVTVE---PQLTNLEDIFDARVNKTDYLQIV 167 (418)
T ss_pred HHHHHHHHhh--ccHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhHhHHHHHhCCCcchhhHHHHH
Confidence 3455555442 1223444444444444 66677777788888888877776 44555555443 223445
Q ss_pred HHHHHHHHHhhhhHHHh
Q 025142 168 KDIRKNVEEACDDLFKV 184 (257)
Q Consensus 168 ~~i~~eV~~v~~d~~~i 184 (257)
+.++..++.+..++..+
T Consensus 168 ~~~q~~~~n~~~~~~~~ 184 (418)
T cd07912 168 QGLQQMATNAAQQLTGI 184 (418)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 55666666666555555
No 131
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.85 E-value=30 Score=32.67 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
|++=|.++.+..+-.+.++++|..+...++.+...+++.+.-+..+..+|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~ei 82 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEI 82 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433333333333333333333
No 132
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=69.81 E-value=49 Score=25.55 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 136 eqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
.+|.++|..+++.+.+-+++-...++...+=++.+++ +.+....+++-++.=+.++..|+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~----~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRS----TNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999888877766555554433 22333444555555555555554
No 133
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.79 E-value=63 Score=33.20 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=13.2
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
++..+++.++..+..+++.++.-...++.++.++
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 134
>PRK04863 mukB cell division protein MukB; Provisional
Probab=69.74 E-value=98 Score=35.67 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=17.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025142 126 TAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~~tKkhLsq 151 (257)
+-.+.+.++++.+....+++++++..
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777766553
No 135
>PRK03918 chromosome segregation protein; Provisional
Probab=69.69 E-value=40 Score=35.14 Aligned_cols=65 Identities=22% Similarity=0.364 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH---HHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR---KNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~---~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
.++..++.+...++.+..+|+.+...+.+..++.+.+. .++.++...++.+...+..+...+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~ 226 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888899999998888888766655544322 334444444444444444444333333
No 136
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=69.68 E-value=43 Score=24.81 Aligned_cols=64 Identities=11% Similarity=0.258 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH---hHHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLND---KVEKQNEISKDIRKNVEEACDDLFKVEHN 187 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~---kld~~~eis~~i~~eV~~v~~d~~~i~~d 187 (257)
+-+-|..+...|+.+...+..-++--...+...+. --++..+++..|+.....++..+..+..+
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888877766666666662 22333344444444444444444443333
No 137
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.47 E-value=32 Score=27.40 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025142 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
...|.+..||++|... - +.|.+++.++-.+..--|+|++.++.+++
T Consensus 14 ~QLrafIerIERlEeE---k----~~i~~dikdvy~eakg~GFDvKa~r~iir 59 (85)
T COG3750 14 GQLRAFIERIERLEEE---K----KTIADDIKDVYAEAKGHGFDVKAVRTIIR 59 (85)
T ss_pred HHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 3445556666665533 2 34455666666777888999999999885
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.36 E-value=17 Score=33.48 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
..+.||.++|+.+++...+++.+++--+.|=..|++
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888877666555444443
No 139
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=69.23 E-value=26 Score=34.08 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhccc-CCcccchh-ccccccccccC
Q 025142 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKK-GRTTESMQ-VGIVGYFLYDS 246 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~-~~~~~~~~-~~i~~~~~~~~ 246 (257)
.|++.-..-...+.+|=.||+.+..+=+.|-..|.-+.-=|..++ ++.-|=..+..+. +.+-..|+ .---..+|.|+
T Consensus 75 ~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~-a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~y 153 (383)
T PF04100_consen 75 EIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVT-AVEQLKELAKKRQYKEIASLLQAVKELLEHFKPY 153 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcc
Confidence 333333333344444455555555555555555544444333332 3444444444322 22222221 11112456677
Q ss_pred CCCCccc
Q 025142 247 NEIPSVT 253 (257)
Q Consensus 247 ~e~~~~~ 253 (257)
-.+|.|.
T Consensus 154 ksi~~I~ 160 (383)
T PF04100_consen 154 KSIPQIA 160 (383)
T ss_pred cCcHHHH
Confidence 7777653
No 140
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=69.20 E-value=44 Score=35.87 Aligned_cols=42 Identities=5% Similarity=0.059 Sum_probs=22.7
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHh
Q 025142 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
.+-..++..+.+.+..+.+++.++.....-.-.+...|-+|.
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (910)
T TIGR00833 603 ASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYS 644 (910)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555666666666666655444445554555544
No 141
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=69.04 E-value=70 Score=27.00 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH--Hhhhh----HHHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF--KVEHN----LKDLQSMI 195 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~--~i~~d----v~~v~~~V 195 (257)
.++.+-.+++..+++++-..=...+.+..++-+..+..|+++.+.-..+.+....+..+-. -++++ +.......
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 5666778888888888887778888899999999999999999999999988777766532 23333 44455566
Q ss_pred Hhhhhhhhh
Q 025142 196 YCLDGKIDS 204 (257)
Q Consensus 196 ~~Le~Ki~~ 204 (257)
..||.+|..
T Consensus 103 ~~L~k~I~~ 111 (126)
T PF09403_consen 103 NKLDKEIAE 111 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666653
No 142
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=68.87 E-value=38 Score=28.37 Aligned_cols=55 Identities=9% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHH-------hHHHHHHHHHHHHHHHHHhhhhHHH
Q 025142 129 SNLNKHLESVTEALTVAKKHLTQRIQNLND-------KVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 129 ~sv~kqLeqVsesL~~tKkhLsqRI~~vd~-------kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
+.+..|++.+...+...|+++.+--|+.+. ++||..+-...+...+..+++|++.
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 457788999999999999988876665554 4666655444444444444444443
No 143
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=68.81 E-value=38 Score=31.75 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNE 165 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~e 165 (257)
+|..-..-+..+|+.+...|....+..+++...|...+....+
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~ 45 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSE 45 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555544444444444443333
No 144
>PRK10698 phage shock protein PspA; Provisional
Probab=68.68 E-value=63 Score=29.19 Aligned_cols=80 Identities=14% Similarity=0.280 Sum_probs=47.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH---------HHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI---------RKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i---------~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
|..-...|+.-++....+-..|..++..|..|+.+...=...+ +.+|.+.-. +.|..+--..+..+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~-----~~~~~~a~~~f~rm 171 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD-----SGKLDEAMARFESF 171 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcchHHHHHHHH
Confidence 5555555666666666666666666777766666654322222 222322222 34555566677778
Q ss_pred hhhhhhhhhhhhhH
Q 025142 199 DGKIDSLADKQDIT 212 (257)
Q Consensus 199 e~Ki~~ie~kQd~t 212 (257)
|.||+++|..-+..
T Consensus 172 E~ki~~~Ea~aea~ 185 (222)
T PRK10698 172 ERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHhHh
Confidence 99999999877764
No 145
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.68 E-value=55 Score=31.07 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 139 sesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
-..|...+.+|.+.|..+..+.++..+--...-.+.+..+.++.++..+.+++.....-...+++++.
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666555566666777777777777777777777777777777666
No 146
>PHA01750 hypothetical protein
Probab=68.54 E-value=17 Score=28.19 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=23.1
Q ss_pred hhHHHhhhhHHHHHHHHH-HhhHHHHHHHHHHH
Q 025142 115 DLMYVTRKSMATAVSNLN-KHLESVTEALTVAK 146 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~-kqLeqVsesL~~tK 146 (257)
.+-|--|.++.||+..+- +-|+++-..|+++|
T Consensus 23 qlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 23 QLYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888999998754 45777777777776
No 147
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=68.52 E-value=69 Score=29.36 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=45.5
Q ss_pred hhHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhhH-------HhHHHHHHHHHHHHHHHHHhhhhHHHhhhh---HH
Q 025142 122 KSMATAVSNLN--KHLESVTEALTVAKKHLTQRIQNLN-------DKVEKQNEISKDIRKNVEEACDDLFKVEHN---LK 189 (257)
Q Consensus 122 r~ms~Av~sv~--kqLeqVsesL~~tKkhLsqRI~~vd-------~kld~~~eis~~i~~eV~~v~~d~~~i~~d---v~ 189 (257)
|.|-+|...++ +.|+..++.|-.|+.+|.-=|+.-. +-+|.+..++..+.++...+.....++-.. ..
T Consensus 26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~ 105 (214)
T PRK11166 26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA 105 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56777777765 7778888888888887764333221 224444444455555555555544332221 34
Q ss_pred HHHHHHHhhhhhhhhh
Q 025142 190 DLQSMIYCLDGKIDSL 205 (257)
Q Consensus 190 ~v~~~V~~Le~Ki~~i 205 (257)
.++..+......+.++
T Consensus 106 e~~~L~~~~~~fL~~v 121 (214)
T PRK11166 106 DARELVTDTRAFLADV 121 (214)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444444444433
No 148
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.46 E-value=1e+02 Score=34.59 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=35.2
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
.-|.++......+...+++..+.+...+..+.-==..++....+..++...-+.+..+++..+..+..+++.+.
T Consensus 881 ~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1311)
T TIGR00606 881 QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIH 954 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666665555443222222233333333333333334444444444444444333
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.38 E-value=50 Score=31.55 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHH----HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIR----KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~----~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
+...+-.|..|-+.|..++.+..+....+. ++...++.++.....++...+..+..++..+..++.+
T Consensus 170 l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~ 240 (312)
T smart00787 170 LNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444442 2444444444444444444444444444444444433
No 150
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.36 E-value=20 Score=32.72 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH--HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN--VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 136 eqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e--V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
+.+..++....|.+++.+..+...+-| .|-+| +.-=+..+..+-+|++.+++-+.-||.|++++|.|
T Consensus 133 ~~~~~~l~~~~~~l~~~~~~~q~~~Ae------~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 133 QSVVRALRSGSRFLKHGLKQLQRNLAE------AITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666667777777666654444332 22222 11123456788899999999999999999999876
No 151
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=68.24 E-value=29 Score=34.10 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=9.1
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 025142 133 KHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqR 152 (257)
++|+.++..|+++-.||.+-
T Consensus 293 ~Nle~lt~~LA~as~~l~~l 312 (370)
T PLN03094 293 KEVEKLTRVAAEASEDLRRL 312 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 152
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.89 E-value=90 Score=27.82 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
..=++++...|..++.|+-+.++-...++.+-.+....+++...+++.+++-+...|-+-.++
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677777777766666666665555555666666777777766666666655543
No 153
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=67.80 E-value=48 Score=24.63 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
|....+.|.+.|+..+..|.+. ...=-.+.-.+-+.+..+..++..++..+..|...+.++.
T Consensus 24 i~~~~~~L~~~i~~~~~eLr~~---V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 24 IRQLENKLRQEIEEKDEELRKL---VYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555555554444322 2222234445555566666666666666666666666554
No 154
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=67.50 E-value=65 Score=26.09 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=4.5
Q ss_pred HHHHHHHHhhhh
Q 025142 169 DIRKNVEEACDD 180 (257)
Q Consensus 169 ~i~~eV~~v~~d 180 (257)
.++..+..+...
T Consensus 108 ~~~~~~~~~~~~ 119 (202)
T PF01442_consen 108 RLEEEVDELEES 119 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 155
>PRK04098 sec-independent translocase; Provisional
Probab=67.47 E-value=24 Score=30.97 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRI 153 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI 153 (257)
-|-.+...+++-+..+-..+..+|.++.+-+
T Consensus 24 KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei 54 (158)
T PRK04098 24 KLPQAMVDIAKFFKAVKKTINDAKSTLDKEI 54 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666666666666544
No 156
>PRK02224 chromosome segregation protein; Provisional
Probab=67.46 E-value=83 Score=33.01 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=7.3
Q ss_pred CCchhHHHHHHHHH
Q 025142 29 GKLPELLRELQSLV 42 (257)
Q Consensus 29 GkLsd~~g~lq~~l 42 (257)
|| |-++..+.-++
T Consensus 35 GK-Stil~ai~~~l 47 (880)
T PRK02224 35 GK-SSLLEACFFAL 47 (880)
T ss_pred CH-HHHHHHHHHHh
Confidence 44 55666655555
No 157
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=67.14 E-value=57 Score=31.76 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
|++=...|+++-+...++++.+.+-+++|.--...=++.+.++...+.+.
T Consensus 9 L~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 9 LQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666777777777777777777776555555455566666655555
No 158
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=67.02 E-value=78 Score=30.42 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred hhhhhHhhhhheeeeEeecCCcchhHHHhhhhHHHHHHH---HHHhhHHHHHHHHH-HHHHHHHHHHhhHHhHHHHHHHH
Q 025142 92 MIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSN---LNKHLESVTEALTV-AKKHLTQRIQNLNDKVEKQNEIS 167 (257)
Q Consensus 92 ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~s---v~kqLeqVsesL~~-tKkhLsqRI~~vd~kld~~~eis 167 (257)
..|-++.-+.|-.|.|| .++..|-.+ .+..||.|.+.+.+ .-..|...|..+...+++|+.-.
T Consensus 24 Gp~Gl~ml~AgA~Y~~y-------------Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i 90 (301)
T PF06120_consen 24 GPPGLVMLGAGAWYYFY-------------QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAI 90 (301)
T ss_pred chHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhH---------------HHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhH
Q 025142 168 KDIRKNVEEACDDL---------------FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (257)
Q Consensus 168 ~~i~~eV~~v~~d~---------------~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (257)
+..+++|..++..+ ..+...+.++.+..+.|...-..++..|..-+.
T Consensus 91 ~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q 152 (301)
T PF06120_consen 91 EDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQ 152 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 159
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=66.09 E-value=44 Score=25.80 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 025142 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~ 164 (257)
-+||.+--.-|-+-|.|+.+..+-.-..+..|||.+..++|+..
T Consensus 11 pkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLE 54 (73)
T KOG4117|consen 11 PKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLE 54 (73)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 47999999999999999999999999999999999999888763
No 160
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=66.09 E-value=40 Score=28.95 Aligned_cols=83 Identities=20% Similarity=0.252 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH-HhhhhHHHhhhhHHH--------HHHHHHhhhhh-----
Q 025142 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE-EACDDLFKVEHNLKD--------LQSMIYCLDGK----- 201 (257)
Q Consensus 136 eqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~-~v~~d~~~i~~dv~~--------v~~~V~~Le~K----- 201 (257)
+.+++++..+-+.|..-|+....++.+..++++.=-+.|. -+++|++++...... ++.+=+.|=..
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~~~~~~~~~~~lie~slw~~L~~It 82 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEELREWLSPDLQLIEESLWDELSSIT 82 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhh
Confidence 4555666666666666666665555555555443333332 356677776666555 22222333333
Q ss_pred ----hhhhhhhhhhHhHHHHH
Q 025142 202 ----IDSLADKQDITNIGMYL 218 (257)
Q Consensus 202 ----i~~ie~kQd~tn~GV~~ 218 (257)
++-.|-.|++-++|+|.
T Consensus 83 DkTqvEw~el~~d~~h~g~Y~ 103 (146)
T PF07295_consen 83 DKTQVEWAELAQDLEHHGVYH 103 (146)
T ss_pred chhHHHHHHHHHHHHhcCCee
Confidence 34445567888888543
No 161
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.00 E-value=88 Score=31.14 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=35.4
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh--------HHHHHHHHHhhhhhhhhhh
Q 025142 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN--------LKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d--------v~~v~~~V~~Le~Ki~~ie 206 (257)
|.++|++.+ ++.++.=++|+..++.++..+..- ...|++.++..-.||..||
T Consensus 259 R~erLEeql---Nd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 259 RYERLEEQL---NDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444444444 345556677787888877655543 4567888888889999999
No 162
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=65.76 E-value=65 Score=25.46 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ 204 (257)
..=+..+..-...||.|+.+
T Consensus 79 E~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 79 EQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33344455555555555543
No 163
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=65.59 E-value=1.4e+02 Score=30.48 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=20.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 129 ~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
+.+...++...+......++|.++++.+...+.+.
T Consensus 88 ~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 122 (779)
T PRK11091 88 SRLVAKLEEMRERDLELNVQLKDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555666666677777666665443
No 164
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=65.51 E-value=93 Score=27.14 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=38.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 129 ~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
+.+.+.|+.+.+.+..-+.+..+=+..|..=-+++..=....+..+.++..-+..-+.++..++.-+..+.++|.
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444445555566666666666666777777666666665553
No 165
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.50 E-value=92 Score=30.82 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=41.6
Q ss_pred hhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025142 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
+|+++-+.-|.+.-+.. ..|..-+|.|..-++||..-+++|+.++...++-+.-.++.|.|..+|.++
T Consensus 218 klR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 45555555555554433 345566666666666666666666666666666666666666666666655
No 166
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=65.43 E-value=98 Score=27.34 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=54.1
Q ss_pred CCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh--HHHHHHHHHHHHHHHHHhhhhHHHh-hhh
Q 025142 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK--VEKQNEISKDIRKNVEEACDDLFKV-EHN 187 (257)
Q Consensus 111 ws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k--ld~~~eis~~i~~eV~~v~~d~~~i-~~d 187 (257)
|+||.--.. .+.+.++.+.+.++.+...+...+..|..--..-... =.+..+--+..+++...++..++.. ..|
T Consensus 57 WsFps~~~~---~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D 133 (188)
T PF03962_consen 57 WSFPSQAKQ---KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSEND 133 (188)
T ss_pred EecChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 677766544 4456677777777777776666666554432111111 0001111112222333333333321 223
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhcccCCcccc
Q 025142 188 LKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRTTES 233 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~ 233 (257)
-+.|. .+...+...-..=++-+.-|+.|-.|+..+-+--++.
T Consensus 134 p~~i~----~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~~ 175 (188)
T PF03962_consen 134 PEKIE----KLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEED 175 (188)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHHH
Confidence 33333 3333333333345556667888888887543333333
No 167
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=64.54 E-value=39 Score=27.21 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=9.8
Q ss_pred hhhhheeeeEeecCCc
Q 025142 98 LGALGYGYMWWKGLSF 113 (257)
Q Consensus 98 vGavGYgYmwWKGws~ 113 (257)
+.+..+||+||-.+.+
T Consensus 12 lvl~L~~~l~~qs~~i 27 (110)
T PF10828_consen 12 LVLGLGGWLWYQSQRI 27 (110)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455567788876543
No 168
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.43 E-value=59 Score=27.04 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEA---LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVses---L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
.|-.+++=.+++...||..-.+ |..-|+.|....+.|...-+.. ...+.+++..++.+..+++.-+..=.
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~-------~qr~~eLqaki~ea~~~le~eK~ak~ 82 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR-------NQRIAELQAKIDEARRNLEDEKQAKL 82 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655433 4455555555555444444433 23344444444444444444322222
Q ss_pred hhhhhhh
Q 025142 197 CLDGKID 203 (257)
Q Consensus 197 ~Le~Ki~ 203 (257)
.|+.++.
T Consensus 83 ~l~~r~~ 89 (107)
T PF09304_consen 83 ELESRLL 89 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 169
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=64.36 E-value=31 Score=27.45 Aligned_cols=62 Identities=18% Similarity=0.400 Sum_probs=36.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+|.+++|.+.+.|+..++ |++.++.+|-.- +++.. -|.+++ .+...|...+...|.++..+.
T Consensus 2 ~V~~eId~lEekl~~cr~----~le~ve~rL~~~-eLs~e-------~R~~lE---~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRR----RLEAVESRLRRR-ELSPE-------ARRSLE---KELNELKEKLENNEKELKLLR 63 (85)
T ss_pred cHHHHHhhHHHHHHHHHH----HHHHHHHHHccc-CCChH-------HHHHHH---HHHHHHHHHhhccHHHHHHHH
Confidence 578899999999888876 567788777532 22221 122222 444445555555555555554
No 170
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.35 E-value=43 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025142 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVsesL~~tKkhLsq 151 (257)
||++-++++.+.+||.++++.+.+-|+++..
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~ 33 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQE 33 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666665555443
No 171
>PRK10698 phage shock protein PspA; Provisional
Probab=64.08 E-value=1.1e+02 Score=27.57 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
..+.+..++..+.....-+..++.-+..|+.||.+...+++
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666777777777777777776665
No 172
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=64.03 E-value=69 Score=37.67 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhH
Q 025142 137 SVTEALTVAKKHLTQRIQNLNDKV 160 (257)
Q Consensus 137 qVsesL~~tKkhLsqRI~~vd~kl 160 (257)
..-.+-+++|+.+.+||+.|.+.+
T Consensus 791 ~~e~s~~~~k~~~e~~i~eL~~el 814 (1822)
T KOG4674|consen 791 ELEESEMATKDKCESRIKELEREL 814 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555554444433
No 173
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.78 E-value=1.5e+02 Score=31.78 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
+-+..+-..+......-...+..+..+++.+..++.......+.-++.+ ..+..|+..+..++..-.++|..-
T Consensus 373 ~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~LnsA 445 (717)
T PF09730_consen 373 AELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNSA 445 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333343444444555556666667777777777666654444444444 333445555555555555555544
Q ss_pred hhhhhhHhHHHHHHHHHhhcccCCccc
Q 025142 206 ADKQDITNIGMYLLCNFVDGKKGRTTE 232 (257)
Q Consensus 206 e~kQd~tn~GV~~Lc~f~~~~~~~~~~ 232 (257)
..-=..--..+.-|+..+--.++..|.
T Consensus 446 QDELvtfSEeLAqLYHHVC~cNgeTPn 472 (717)
T PF09730_consen 446 QDELVTFSEELAQLYHHVCMCNGETPN 472 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCc
Confidence 443334444455554444444444444
No 174
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=63.76 E-value=55 Score=34.74 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=24.7
Q ss_pred hHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Q 025142 116 LMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLND 158 (257)
Q Consensus 116 lMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~ 158 (257)
.||+|.+.|.+.+.....-+..-.+.+..=.+...++|++|-.
T Consensus 159 ~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~ 201 (806)
T PF05478_consen 159 CAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQIDHLLV 201 (806)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4899999888777655544444444444444444444444433
No 175
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.72 E-value=1.3e+02 Score=28.06 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHh
Q 025142 55 TDAIKDQLNRLKFEC 69 (257)
Q Consensus 55 ~d~L~aQV~~L~~El 69 (257)
...+.+|+.+|..++
T Consensus 83 l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 83 AAELESQVLRLEAEV 97 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666777776666
No 176
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=63.49 E-value=49 Score=31.05 Aligned_cols=63 Identities=14% Similarity=0.329 Sum_probs=30.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH-HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQ-NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~-~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
++|+++-.-|...-+.+.+||+.+..+..+. ..+.+++ +.+.+...++.++..++.++..+..
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l-~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQL-KQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3555555555555556666665555443222 2222222 2234444444666666666655554
No 177
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=63.01 E-value=64 Score=28.17 Aligned_cols=51 Identities=29% Similarity=0.407 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHH--HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025142 135 LESVTEALTVAKKH--LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 135 LeqVsesL~~tKkh--LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
=+.+++.|....+| +.+||+.|....+...+-++.|.+++.+.+.+|..+-
T Consensus 11 d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 11 DDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 5677777777777777767777777766666655543
No 178
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=62.93 E-value=1.1e+02 Score=27.90 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
.-|.++...++++...+++...=-..-...-..+..++..+..|++.....-..|+.++..+...=+
T Consensus 68 ~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 68 KEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333444444445555556666666666666666665554333
No 179
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.71 E-value=42 Score=28.47 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=13.6
Q ss_pred hHHHHHHH--HHHHHHh-hhhcCCCeEEEe
Q 025142 55 TDAIKDQL--NRLKFEC-QRASSGQIFVRN 81 (257)
Q Consensus 55 ~d~L~aQV--~~L~~El-~La~sr~iTVvn 81 (257)
.+.|..+| .....=| .|+....|+.=.
T Consensus 23 ~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~ 52 (169)
T PF07106_consen 23 FDNLHNKVGKTAVQKALDSLVEEGKIVEKE 52 (169)
T ss_pred HHHHHhhccHHHHHHHHHHHHhCCCeeeee
Confidence 34455444 2333444 566666666543
No 180
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=62.55 E-value=1.1e+02 Score=31.92 Aligned_cols=62 Identities=13% Similarity=0.268 Sum_probs=53.5
Q ss_pred eEeecCCcchh--HHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Q 025142 106 MWWKGLSFADL--MYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS 167 (257)
Q Consensus 106 mwWKGws~sDl--MfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis 167 (257)
+.=+|+|.+|| |-.-|--|..-.+-++-+-+.+..++-+++.+...+++.|.+++.+.+-+.
T Consensus 360 ~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~ 423 (622)
T COG5185 360 LRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLI 423 (622)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888885 888999999999999999999999999999999999999999877655433
No 181
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=62.46 E-value=36 Score=25.24 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=8.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 025142 128 VSNLNKHLESVTEALTVAKKH 148 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkh 148 (257)
...+....+.+.+.+.....+
T Consensus 28 R~~l~~~~~~~~~~~~~~~~~ 48 (74)
T PF12732_consen 28 REKLKDKAEDLKDKAKDLYEE 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333
No 182
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=62.40 E-value=39 Score=26.37 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
.-|.+-.||++|..... +|+ +++.++-....--|+|++.++++|.-
T Consensus 5 ~Lr~~ieRiErLEeEk~---~i~----~dikdVyaEAK~~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 5 QLRQFIERIERLEEEKK---AIS----DDIKDVYAEAKGNGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556667776665543 334 44444444556679999999999874
No 183
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=62.36 E-value=99 Score=32.06 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH--------HHHHHHHHhhhhHHH----hhhhHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISK--------DIRKNVEEACDDLFK----VEHNLK 189 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~--------~i~~eV~~v~~d~~~----i~~dv~ 189 (257)
.+..++...+..-|+.--..+...-+.|+.+|.+|.+++|-+.+.-. .+.......-.++.+ +...++
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~ 415 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLK 415 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888776677777778999999999998876543211 111112222222222 333444
Q ss_pred HHHHHHHhhhhhhhhhhhhhh
Q 025142 190 DLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~kQd 210 (257)
.|+..|+.|-..|..|..|.+
T Consensus 416 ~v~eKVd~LpqqI~~vs~Kc~ 436 (531)
T PF15450_consen 416 EVQEKVDSLPQQIEEVSDKCD 436 (531)
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 555566655555555555544
No 184
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=62.29 E-value=1.6e+02 Score=28.65 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=8.2
Q ss_pred hHHHhhhhHHHHHHHH
Q 025142 116 LMYVTRKSMATAVSNL 131 (257)
Q Consensus 116 lMfVTkr~ms~Av~sv 131 (257)
..-.|..|+..|=+.+
T Consensus 202 W~~~s~~ni~~a~~e~ 217 (384)
T PF03148_consen 202 WEEFSNENIQRAEKER 217 (384)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444666666554433
No 185
>PLN02678 seryl-tRNA synthetase
Probab=61.96 E-value=38 Score=33.94 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
+-.-+|.+.++++.+..+. ++++++|.. ...-.++.+.+...++.+.+-+..||.++..++.+-+
T Consensus 38 ld~~~r~l~~~~e~lr~er---N~~sk~I~~-~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEF---NKLNKEVAK-LKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776654 556666654 1122233334444444444444444555555544433
No 186
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.88 E-value=50 Score=37.29 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHh
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
.++.-...+....+|+++.|..+.+++++-..-...+.+.....+.++.+...++.++...-..++.+++.+..+=+...
T Consensus 395 ~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t 474 (1293)
T KOG0996|consen 395 DLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQET 474 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444556677778888888888888777766666666777777777777777777777777777777776665555555
Q ss_pred HHH
Q 025142 214 IGM 216 (257)
Q Consensus 214 ~GV 216 (257)
.|+
T Consensus 475 ~~~ 477 (1293)
T KOG0996|consen 475 EGI 477 (1293)
T ss_pred hhh
Confidence 554
No 187
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=61.70 E-value=92 Score=25.80 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.+.|..+...++..+..+...-...-..+..+..+|.+|..-|
T Consensus 49 qk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDve 91 (121)
T PF06320_consen 49 QKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVE 91 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 3333333444444444444444444444444444444443333
No 188
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=61.52 E-value=69 Score=32.39 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 164 NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
......++.++..++.++.+++.+.......|..|+.++..
T Consensus 308 ~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 308 RASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 33344444444444444444444444444444444444443
No 189
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=61.43 E-value=32 Score=29.69 Aligned_cols=61 Identities=26% Similarity=0.350 Sum_probs=37.0
Q ss_pred hhhheeeeEeecCCcchhH------HHhhhhHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHhhHHhHH
Q 025142 99 GALGYGYMWWKGLSFADLM------YVTRKSMATAVSNLNKHLESVTEALTVA---KKHLTQRIQNLNDKVE 161 (257)
Q Consensus 99 GavGYgYmwWKGws~sDlM------fVTkr~ms~Av~sv~kqLeqVsesL~~t---KkhLsqRI~~vd~kld 161 (257)
|+=.|.|.--++- .+++ |.-.++..+|.+.+-|..+.+..++... -++|++|++.+...+.
T Consensus 63 Gag~fv~~kv~~~--~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 63 GAGLFVKAKVKDM--DKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred CCCceEEEEeccC--ceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555542 2222 3467899999999999988877665543 3344455554444443
No 190
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.26 E-value=68 Score=30.34 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
...++.++..=-.+|+.|..=-..=..|-..+... -++.++-+.+++-+..++..++++...+.++..=...||.||.+
T Consensus 123 R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~-~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 123 RQLASEITQRGASLYDLLGKEVELREERQRALARP-LELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444555555554332222333333333 34567888888888888888888888888888888888888864
Q ss_pred h
Q 025142 205 L 205 (257)
Q Consensus 205 i 205 (257)
-
T Consensus 202 k 202 (267)
T PF10234_consen 202 K 202 (267)
T ss_pred H
Confidence 3
No 191
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.17 E-value=1.5e+02 Score=28.19 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=5.3
Q ss_pred hhhHHHHH
Q 025142 121 RKSMATAV 128 (257)
Q Consensus 121 kr~ms~Av 128 (257)
|+.+.||.
T Consensus 109 rkEl~nAl 116 (290)
T COG4026 109 RKELKNAL 116 (290)
T ss_pred HHHHHHHH
Confidence 66677765
No 192
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.99 E-value=75 Score=27.69 Aligned_cols=76 Identities=11% Similarity=0.224 Sum_probs=54.6
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh-hhhhhhhhhhhhhhHhHHHHHHHHHh
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC-LDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~-Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
++..+++.|+.+|.....+...+.+.-.++..|+..++.-+..+-..-.+ |+..+..+...-+....+...|-+.+
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~~ 84 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKYT 84 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778887777778878888888888888888888777777777 77777766666556655555555543
No 193
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=60.65 E-value=42 Score=26.69 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=36.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
.+.|..+||++. ++-.||.+|-|+|-.+|.+.-+-.++|+.+..+-
T Consensus 28 ~~~ins~LD~Ln----s~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 28 YAAINSMLDQLN----SCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777654 5567899999999999999999999998887544
No 194
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=60.36 E-value=1.2e+02 Score=30.28 Aligned_cols=77 Identities=6% Similarity=0.189 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|-+.+..+-+...++.+++.+-|.++.+.+.-+-..|+|-..-.+.+.++|++. ++--..++.++++-+..+|.||+
T Consensus 217 ~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~---~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 217 ILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDL---TELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHH
Confidence 344466666777777777777777777777777777877777777777777665 23345566667766666677665
No 195
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=60.20 E-value=43 Score=29.22 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhhhHHHh-hhhHHHHHHHHHhhhhhhhh
Q 025142 166 ISKDIRKNVEEACDDLFKV-EHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i-~~dv~~v~~~V~~Le~Ki~~ 204 (257)
-...-+..+.+|..+..+. ..|+...-.....+--++..
T Consensus 56 ~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~ 95 (159)
T PF05384_consen 56 RERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAM 95 (159)
T ss_pred HHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444332 23444444444444444433
No 196
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.92 E-value=32 Score=29.05 Aligned_cols=68 Identities=21% Similarity=0.360 Sum_probs=41.3
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHH
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLC 220 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 220 (257)
+=.++++.|..|+--.+.++-.|-+||..--.-+..+++|+++-.-...+==+|+..+... .|+..+|
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~ 100 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLC 100 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHH
Confidence 3344566666666666666666666666666666666666666555555444455444333 6777777
No 197
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=59.88 E-value=1.2e+02 Score=27.81 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=32.6
Q ss_pred CCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 025142 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (257)
Q Consensus 111 ws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~ 155 (257)
|||+. =|.+.+.+.|.++-++++.|+..+..-|..+.--...
T Consensus 70 WsF~s---~~~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~ 111 (209)
T COG5124 70 WSFKS---QTLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKAT 111 (209)
T ss_pred Eecch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 56654 3899999999999999999998888777666655433
No 198
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=59.85 E-value=97 Score=32.30 Aligned_cols=89 Identities=12% Similarity=0.256 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
.-|...|.+-...|.++..--...|.-|...+..+..+.+....=++.-.+++..++.....+-.+++.=.+....|...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688888888899999999999999999999999888777666666667888888888888888888888888888888
Q ss_pred hhhhhhhhh
Q 025142 202 IDSLADKQD 210 (257)
Q Consensus 202 i~~ie~kQd 210 (257)
+.++...-+
T Consensus 477 ~e~~~k~~~ 485 (594)
T PF05667_consen 477 LEKLPKDVN 485 (594)
T ss_pred HHhCCCCCC
Confidence 887765533
No 199
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=59.84 E-value=81 Score=24.55 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=30.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHH
Q 025142 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMI 195 (257)
Q Consensus 131 v~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V 195 (257)
+...|+.=++.|...-....+|++.+.....+-.++.+.++.++ +.|-.-|..++..+
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DL-------d~i~krir~lk~kl 80 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDL-------DYIFKRIRSLKAKL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33444444555555555555566666666655555555555555 55555555554443
No 200
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=59.77 E-value=73 Score=32.19 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=19.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 025142 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~~tKkhLsqRI~~v 156 (257)
+....+...|++++..|.++...|....+.+
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l 296 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDEL 296 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556666677777777777766666644444
No 201
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=59.47 E-value=83 Score=30.95 Aligned_cols=73 Identities=26% Similarity=0.357 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh-HHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHH
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD-LFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d-~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
++-..+|.+..+++++. .+.++++++|..... -.++ .+.+...++.+.+-+..||.++..++.+.+.....|-
T Consensus 34 ~ld~~~r~~~~~~~~l~---~erN~~sk~i~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lP 107 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQ---AKRNELSKQIGKAKG-QKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIP 107 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35566777777777766 456677887765321 1233 4555666666666677777777777766655444443
No 202
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=59.43 E-value=54 Score=31.26 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=37.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 025142 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (257)
.++..+...|+++-....+.=.++++||.+-..+|+..++=+...+.+|..+++
T Consensus 18 Eti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456667777777777777777788888887777777666655555666665554
No 203
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=59.32 E-value=3.1 Score=34.69 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 025142 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
.|.+.+......+...+.-+..|...+..|..|+..++..++.
T Consensus 42 ~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 42 ETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333344444444455555666666666677777777766666
No 204
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.19 E-value=76 Score=33.56 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh-----------------HHHhhhhHHHHHHHHH
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD-----------------LFKVEHNLKDLQSMIY 196 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d-----------------~~~i~~dv~~v~~~V~ 196 (257)
+.+..-..+..+-+.|.-++..|+..+++++......++++..++.. +......+..=...|+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555556666666666666666666665555555554443 3333444444445566
Q ss_pred hhhhhhhhhhh
Q 025142 197 CLDGKIDSLAD 207 (257)
Q Consensus 197 ~Le~Ki~~ie~ 207 (257)
.|+.|+.++..
T Consensus 499 ~L~~~l~~l~k 509 (652)
T COG2433 499 ELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHH
Confidence 66666666663
No 205
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.17 E-value=1.5e+02 Score=30.83 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHH
Q 025142 168 KDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 168 ~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
...+.+...+++.+.....-++.-++-+..|..-+.++-..+|.|..=.
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL 327 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAEL 327 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777778888888888888888888888887775433
No 206
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=59.11 E-value=1.3e+02 Score=30.40 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
..+.++.|+.+++.+|..+..|+..++..|..|...|...-..
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e 324 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEE 324 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777778888888888888888887777655433
No 207
>PRK12687 flagellin; Reviewed
Probab=59.06 E-value=1.6e+02 Score=27.80 Aligned_cols=30 Identities=7% Similarity=-0.065 Sum_probs=23.1
Q ss_pred CchHHHHHHHHHHHHHh-hhhcC---CCeEEEeC
Q 025142 53 NFTDAIKDQLNRLKFEC-QRASS---GQIFVRNE 82 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~La~s---r~iTVvn~ 82 (257)
.+-.+|+.+++.|.+|| ..+.+ +.+-++++
T Consensus 107 ~dr~~i~~Ei~~L~~~i~~ia~~~~fnG~~lL~~ 140 (311)
T PRK12687 107 IDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSV 140 (311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCEeccCC
Confidence 56788999999999999 87764 45666653
No 208
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=58.97 E-value=1.2e+02 Score=31.35 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=66.0
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH----------H------HHHHHhhhhHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI----------R------KNVEEACDDLFK 183 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i----------~------~eV~~v~~d~~~ 183 (257)
++|..-.-++.+-+-|+.+++.++. ......+|.++++.+|...+-.+.- + .+.-+...|+|+
T Consensus 336 A~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~ 414 (533)
T COG1283 336 AAREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEH 414 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHH
Confidence 5666667777788888888999987 7777888888888888765433211 1 234556677777
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhh
Q 025142 184 VEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
||+=++.+ +.-.+.|+ +.+-.++-.|..-||++..
T Consensus 415 IgDiie~l---~~~~~kk~---~~~~~fse~~~~el~~l~~ 449 (533)
T COG1283 415 IGDIIERL---LELADKKI---ANGRAFSEDGLEELDALFA 449 (533)
T ss_pred HHHHHHHH---HHHHHHHH---hcCCCCCHHHHHHHHHHHH
Confidence 77776663 33333333 4566778888888877654
No 209
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=58.95 E-value=78 Score=27.97 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH-HHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEI-SKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~ei-s~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
-|+.++++-+.+- .|+.-+..|-..=..+++.+.-+..+..++-++ .+.+.++|.+++.-++....|+..+
T Consensus 70 ~kk~~~~~~eele-rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 70 QKKQLQDIKEELE-RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred hhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 4555666655553 355555555555555666666666666666655 6666777777777777777666554
No 210
>PHA03395 p10 fibrous body protein; Provisional
Probab=58.93 E-value=35 Score=27.44 Aligned_cols=11 Identities=36% Similarity=0.604 Sum_probs=5.8
Q ss_pred HHhhHHhHHHH
Q 025142 153 IQNLNDKVEKQ 163 (257)
Q Consensus 153 I~~vd~kld~~ 163 (257)
|..||.|+|..
T Consensus 13 Ikavd~KVdal 23 (87)
T PHA03395 13 IKAVSDKVDAL 23 (87)
T ss_pred HHHHhhHHHHH
Confidence 55555555533
No 211
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.88 E-value=24 Score=28.80 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
|+.|-.+|+.+..++.++.+=...++++|.++-+.=.++.-+-+.++..+..++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888999999988888888888999988888888888899999999988876
No 212
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=58.86 E-value=38 Score=29.19 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
-+.+++++-..+++.|+.+|.+-+ ...++++|-....|+.++-..+..+...++..+.
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~ 61 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAK--SNLGKESIRMALEDLADHYCKIGDLEEALKAYSR 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467888888999999999998655 6777888888888888888888877777776654
No 213
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=58.84 E-value=1.2e+02 Score=26.02 Aligned_cols=29 Identities=7% Similarity=0.022 Sum_probs=14.3
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 181 LFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
...+...++..++.+...-.||...+.++
T Consensus 140 ~~~~~~~~~~~~~~l~~~lekL~~fd~~~ 168 (204)
T PF04740_consen 140 SSSFIDSLEKAKKKLQETLEKLRAFDQQS 168 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555444445555554433
No 214
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.83 E-value=43 Score=31.03 Aligned_cols=51 Identities=24% Similarity=0.351 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 025142 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH 186 (257)
Q Consensus 136 eqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~ 186 (257)
..+=.-|.+.|.++-+|...|...+.++.......+.||..++.|=.+.=+
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888999999999999999999977777777777777666444333
No 215
>PHA00276 phage lambda Rz-like lysis protein
Probab=58.75 E-value=55 Score=28.53 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025142 159 KVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 159 kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
++.++.+++...++|+..++....++..|+.+
T Consensus 50 ~QqaVaal~~~yqkEladaK~~~DrLiadlRs 81 (144)
T PHA00276 50 TQAAINAVSKEYQEDLAALEGSTDRVIADLRS 81 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 47778888888999999998888887777754
No 216
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=58.67 E-value=1.2e+02 Score=33.70 Aligned_cols=93 Identities=17% Similarity=0.327 Sum_probs=59.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
....-++|-++...+..+...+.+++..+..++++..+-.+...++..+.++ .+..+...++.-+..++.+|+.++.
T Consensus 258 l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~---~~~~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 258 LQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRD---ELNKELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777888888888888888887776666666655555443 3344555555556666677777664
Q ss_pred h-hhhHhHHHHHHHHHh
Q 025142 208 K-QDITNIGMYLLCNFV 223 (257)
Q Consensus 208 k-Qd~tn~GV~~Lc~f~ 223 (257)
+ ..|-+.+|.-+++=+
T Consensus 335 ~~~~ye~~~i~~~~~~~ 351 (1201)
T PF12128_consen 335 QKKDYEDADIEQLIARV 351 (1201)
T ss_pred HHHHHHHCCHHHHHHHH
Confidence 3 455566776665533
No 217
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.48 E-value=29 Score=33.18 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHH
Q 025142 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
.=|.-|...||.|-++|+++.|.-.+.+.+..+-..+++.....++.++.-+..|-..|. +-.+-+..+|+-..-+
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~--~rdeli~khGlVlv~~ 180 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK--QRDELIEKHGLVLVPD 180 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCeeeCCC
Confidence 347788899999999999999999999999888888888877777777777777766664 2334456667665544
No 218
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.43 E-value=2.3e+02 Score=30.50 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
..+...|..+.++++-+-....+..+...++...+.+++-+...+...-..-..+++..+-....++..+|.-+..++..
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999888888888888888888888888888888888888888
Q ss_pred hhhhhhhhhhHhHHHHHH
Q 025142 202 IDSLADKQDITNIGMYLL 219 (257)
Q Consensus 202 i~~ie~kQd~tn~GV~~L 219 (257)
+++....=+-.+.-+..+
T Consensus 195 ~~~~~~ql~~~~q~~~~~ 212 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQEL 212 (716)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 887665544444444433
No 219
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=58.41 E-value=58 Score=30.79 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q 025142 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKN 173 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~e 173 (257)
+-|.+|-.+++.+..++++.++=.+.++.+
T Consensus 149 ~EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 149 KEKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544333333333
No 220
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.38 E-value=46 Score=30.63 Aligned_cols=47 Identities=4% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025142 144 VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 144 ~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
..--+|.++|+.+...+++..-..+...-++..+++.-.++--|++.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555444444444444444444444444444444443
No 221
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=58.33 E-value=1.8e+02 Score=28.43 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=57.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh----
Q 025142 126 TAVSNLNKHLESVTEALTVAKK--------------HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN---- 187 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~~tKk--------------hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d---- 187 (257)
+..+.+.+.+.++.+.|....+ +....|..|-.++.+.++-++.++.-|.++-.|+.+...=
T Consensus 25 ~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNL 104 (383)
T PF04100_consen 25 ELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNL 104 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666554443 3345577777888888888888888888888888775432
Q ss_pred ---------HHHHHHHHHhhhhhhhhhhhhhhhH-hHHHHHHHHHhh
Q 025142 188 ---------LKDLQSMIYCLDGKIDSLADKQDIT-NIGMYLLCNFVD 224 (257)
Q Consensus 188 ---------v~~v~~~V~~Le~Ki~~ie~kQd~t-n~GV~~Lc~f~~ 224 (257)
++.+-..+..|+.-+..=.+++-.. ...|.-|.++..
T Consensus 105 T~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~ 151 (383)
T PF04100_consen 105 TQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFK 151 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 2223333444444444433333322 244555555554
No 222
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.15 E-value=1.6e+02 Score=27.41 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqR 152 (257)
..|++..+.++..+++.+.+|...+++++++
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6899999999999999999999999988663
No 223
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=58.10 E-value=84 Score=32.41 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=56.8
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
+.|..+-..-..++.++.+.++.|+.-++.+...|...-+++....+=...+.+++..+ ...|.+...+.+-=..|
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~L 206 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQL 206 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHH
Confidence 56778888888999999999999999999888888776666555544444444555544 44566666665555555
Q ss_pred hhhhhh
Q 025142 199 DGKIDS 204 (257)
Q Consensus 199 e~Ki~~ 204 (257)
..+|..
T Consensus 207 v~eLs~ 212 (552)
T COG1256 207 VDELSQ 212 (552)
T ss_pred HHHHHh
Confidence 555553
No 224
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=57.92 E-value=55 Score=21.99 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=25.4
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025142 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
+.|+++...+-++..+...+..+|.+=..=+.+|..+++..+.-+.
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~ 51 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVK 51 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666665554445555555544444333
No 225
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=57.90 E-value=1.3e+02 Score=29.90 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 025142 124 MATAVSNLNKHLESVTEALTV 144 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~ 144 (257)
-+.++..+-++|+++...++.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~ 89 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRD 89 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 444566666666655544433
No 226
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=57.59 E-value=2e+02 Score=28.88 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=31.4
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqR 152 (257)
=--|+.|++-+..+-+.+|.+.+.+...|+...+|
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~R 239 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQR 239 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34578899999999999999999999999988877
No 227
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=57.46 E-value=29 Score=35.29 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 159 KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 159 kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
+|.++++-++++++++..++.+++.+....+..++.++.||..+.+++..+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555444444455555555565555555554
No 228
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=57.45 E-value=1.4e+02 Score=26.57 Aligned_cols=69 Identities=10% Similarity=0.185 Sum_probs=50.3
Q ss_pred eecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 025142 108 WKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN 187 (257)
Q Consensus 108 WKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d 187 (257)
+.+||.+. ..|.++...++..+|..+.++..+-.. .++.-+-|.+....+..++.=+. ++|+.+...+
T Consensus 58 f~~ls~~E------~~l~~~le~~g~~~d~~~~~~~~~~~~----~~~f~e~LkEy~~ya~slk~vlk--~r~~~q~~~e 125 (201)
T cd07622 58 FSEWSAIE------KEMGDGLQKAGHYMDSYAASIDNGLED----EELIADQLKEYLFFADSLRAVCK--KHELLQYDLE 125 (201)
T ss_pred HHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 56788888 699999999999999988888876544 35566777777777777776333 5555555544
Q ss_pred H
Q 025142 188 L 188 (257)
Q Consensus 188 v 188 (257)
.
T Consensus 126 ~ 126 (201)
T cd07622 126 K 126 (201)
T ss_pred H
Confidence 3
No 229
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.44 E-value=36 Score=27.19 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=14.7
Q ss_pred HHHhhhhHHHHHHHHHHhhHHH
Q 025142 117 MYVTRKSMATAVSNLNKHLESV 138 (257)
Q Consensus 117 MfVTkr~ms~Av~sv~kqLeqV 138 (257)
|||- ++..+|...+.+.++..
T Consensus 59 vlv~-~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 59 LLVK-TDKEEAIQELKEKKETL 79 (110)
T ss_pred hhhe-ecHHHHHHHHHHHHHHH
Confidence 6664 66777777777776655
No 230
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=57.04 E-value=4.6 Score=34.80 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=35.8
Q ss_pred CCCCCcceeehhhhhHhhhhhe-eeeEee---cCCc-chhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 025142 82 ENSGGNATSLMIPAATLGALGY-GYMWWK---GLSF-ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLT 150 (257)
Q Consensus 82 ~~sGg~~s~~ivpaA~vGavGY-gYmwWK---Gws~-sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLs 150 (257)
+|++.++.+.++|..++|++-| .|.-.| +-+- .|--..+.++=..--..-..+|.|+.+.|+.|.+++.
T Consensus 75 ~g~~~g~~~~imPlYtiGI~~f~lY~l~Ki~~~k~~~~~~~~~~~~~~~~~~~~~~~eL~qLq~rL~qTE~~m~ 148 (152)
T PF15361_consen 75 GGSGKGLMGQIMPLYTIGIVLFILYTLFKIKKKKDSPRERKSSTERKGNTKRKITDYELAQLQERLAQTERAME 148 (152)
T ss_pred CCCCCchhhhHhHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4444567789999999999998 455444 3221 0111111000001111233466666666666666554
No 231
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=56.98 E-value=65 Score=29.20 Aligned_cols=44 Identities=16% Similarity=0.399 Sum_probs=24.9
Q ss_pred HHHHHHHhhHHhHHH-------HHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 148 HLTQRIQNLNDKVEK-------QNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 148 hLsqRI~~vd~kld~-------~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.|.-|||+++..+|+ |.|-.-.++.+|+.++.|+.....-++.+
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 344556665555554 33334456666777766666666555544
No 232
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=56.87 E-value=1.5e+02 Score=26.81 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhH
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (257)
+..-+...+..+..+..+|..-..||++..+......+.+.++.+=......-+ ..++.|..+|+..|+-++.
T Consensus 169 ~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l-------~~~~~k~~~l~~~~~~~~~ 241 (264)
T PF06008_consen 169 FQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNL-------EDLEKKKQELSEQQNEVSE 241 (264)
T ss_pred HhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777777888777777777766666644444433333 3446666666666655543
No 233
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=56.80 E-value=47 Score=25.23 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 025142 58 IKDQLNRLKFEC 69 (257)
Q Consensus 58 L~aQV~~L~~El 69 (257)
+.+|+..|..++
T Consensus 17 ~~~q~~~l~~~~ 28 (106)
T PF01920_consen 17 LEQQIQQLERQL 28 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 234
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=56.68 E-value=18 Score=35.02 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=20.8
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
.+.+.++.+.+..+...++.....+..|+.|++.+|..-.
T Consensus 150 Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 150 EERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344555555555555555555555555555555554433
No 235
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.52 E-value=1.4e+02 Score=28.53 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=56.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.-+.+++.....+...-+++.++-+.+++-+++....+..+..-+.+.+..+...-.++..+......-...+.++-...
T Consensus 215 ~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~ll~~~ 294 (359)
T COG1463 215 AASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQLLHGL 294 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 33445555556666666777777777888888877777777777777777776655556666666665555555555544
Q ss_pred hhHhHHH
Q 025142 210 DITNIGM 216 (257)
Q Consensus 210 d~tn~GV 216 (257)
.......
T Consensus 295 p~~~~~~ 301 (359)
T COG1463 295 PTYAANL 301 (359)
T ss_pred chhhhhh
Confidence 4444444
No 236
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=56.50 E-value=1.5e+02 Score=28.65 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH---HhhhhHHHHHHHHHhhhhhhh
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF---KVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~---~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
-|-.--.++.+-|+.+..+|..+-.+-++..+-.....+++.+++.+.. .-+.++.++...++-||.+.-
T Consensus 52 E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHH
Confidence 3334445667777778888888888888888777777777777777777 456777777666665555443
No 237
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=56.48 E-value=87 Score=23.85 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld 161 (257)
.++...+.....++.+....+|.++....+.+-.-|+
T Consensus 20 ~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~ 56 (127)
T smart00502 20 EDALKQLISIIQEVEENAADVEAQIKAAFDELRNALN 56 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433333
No 238
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=56.30 E-value=88 Score=25.98 Aligned_cols=20 Identities=5% Similarity=0.147 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHh-hhhc
Q 025142 54 FTDAIKDQLNRLKFEC-QRAS 73 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El-~La~ 73 (257)
.-+.+..+++.+...+ .|..
T Consensus 27 ~f~~~~~~~~~~~~~~~~l~~ 47 (229)
T PF03114_consen 27 EFEELEEKFKQLEESIKKLQK 47 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666 5444
No 239
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.22 E-value=2.1e+02 Score=32.19 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=16.0
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
+.+..+++.+..-+..|..++...+.....-..-+.|+
T Consensus 987 e~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 987 EECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433334444443
No 240
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=55.88 E-value=18 Score=29.60 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD 169 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~ 169 (257)
++.+++..+..-|.++.+.+.+++..+..+.+.+..++++.+++...
T Consensus 66 g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~ 112 (133)
T PF06148_consen 66 GMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREE 112 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999998888888888877655443
No 241
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=55.62 E-value=89 Score=23.70 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHH
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~ 164 (257)
.+......+.++|..+...+.+..
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~ 32 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELE 32 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554443
No 242
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=55.60 E-value=23 Score=30.48 Aligned_cols=108 Identities=8% Similarity=-0.037 Sum_probs=56.1
Q ss_pred EeecCCcchhHHHhhhh---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025142 107 WWKGLSFADLMYVTRKS---MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 107 wWKGws~sDlMfVTkr~---ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
-||--|+++|--+|--. +.+..---.++|+.+-..|..-|..|..+|...-..+. ++..... |...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~~~~~~~~----------~~~~~~~-D~~D 74 (151)
T PRK10778 6 NRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVDRTVTHMQ----------DEAANFP-DPVD 74 (151)
T ss_pred hcccccchhccccccccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cccccCC-CHHH
Confidence 38888888888887766 33333333467777777777777766666553322221 1110111 1111
Q ss_pred hhhh---HHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhc
Q 025142 184 VEHN---LKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDG 225 (257)
Q Consensus 184 i~~d---v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~ 225 (257)
...+ ..-...+...-...|..|+.....-..|-|-.|.-++.
T Consensus 75 ~a~~~~~~~~~l~~~~r~~~~L~~I~~AL~Ri~~gtYG~Ce~CGe 119 (151)
T PRK10778 75 RAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGV 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeccCCC
Confidence 1111 00011112222344555555555566789999998875
No 243
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=55.44 E-value=93 Score=23.84 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
++|++..+.++..+..||+.+|.+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEar 72 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEAR 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888765
No 244
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=55.29 E-value=2.5e+02 Score=28.71 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHHHhhhhhhhhhhhhhhhHhHHHHHHHH
Q 025142 191 LQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 191 v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
+...+..+...++.|+..|.--+..+..|+.
T Consensus 377 i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 377 IQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777777777777776654
No 245
>PRK13694 hypothetical protein; Provisional
Probab=55.18 E-value=83 Score=25.12 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
+..-|.+-.||++|+.. -++|+..|++--.++ .--|+|++.++++|.-
T Consensus 11 ~~~Lr~fIERIERLEeE---kk~i~~dikdVyaEA----K~~GfD~K~~r~ii~l 58 (83)
T PRK13694 11 KEQLRAFIERIERLEEE---KKTISDDIKDVYAEA----KGNGFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HhcCCcHHHHHHHHHH
Confidence 34445556666666544 445555555544444 5679999999999863
No 246
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.15 E-value=1.2e+02 Score=28.28 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=58.6
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHh
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
++.-++|.++.+|-...-+...+.++..++..|..+.+-=+..+-.+=.+|+..|..+...-+-+..|+..|-+..
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566789999999999999999998888888877666666666666666777777777777777777777776654
No 247
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.12 E-value=2.5e+02 Score=29.55 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=17.1
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHH
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVT 139 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs 139 (257)
++++|==+|+.+.+-.+++.++++...
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~ 241 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLK 241 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777766666555443
No 248
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.06 E-value=1e+02 Score=24.22 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=36.7
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
++.|..|+.+-.+.+...+=||.+++++=..+..++++.++.-+.|+..=..+...|.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666677777766666666666666666666666555544443
No 249
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=54.92 E-value=1.3e+02 Score=26.43 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=25.1
Q ss_pred hHHHhhhhHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHhHH
Q 025142 116 LMYVTRKSMATAVSNLNKHLESVTEAL-TVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 116 lMfVTkr~ms~Av~sv~kqLeqVsesL-~~tKkhLsqRI~~vd~kld 161 (257)
++..--....+.+..+.++++++.+.+ ...++..-++|-.+...+.
T Consensus 115 il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~ 161 (292)
T PF01544_consen 115 ILDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELS 161 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 334445566677777777777777776 3333333344444443333
No 250
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=54.82 E-value=1.1e+02 Score=24.66 Aligned_cols=18 Identities=11% Similarity=0.423 Sum_probs=10.0
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 025142 126 TAVSNLNKHLESVTEALT 143 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~ 143 (257)
+-|.+|..+|..+...+.
T Consensus 6 ~~v~~I~~~i~~i~~~v~ 23 (151)
T cd00179 6 EEVEEIRGNIDKISEDVE 23 (151)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666555543
No 251
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=54.78 E-value=10 Score=29.33 Aligned_cols=44 Identities=20% Similarity=0.380 Sum_probs=31.7
Q ss_pred hHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025142 116 LMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 116 lMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~ 162 (257)
+=|.||+..+. .++.+-++--+.|...-++|.+||+.|.+=||+
T Consensus 24 lHY~~k~~~~~---~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 24 LHYRSKRKTAA---SLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34777877664 355566666677777788899999988877764
No 252
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=54.59 E-value=1.2e+02 Score=25.05 Aligned_cols=54 Identities=13% Similarity=0.299 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH----hhhhHHHHHHHHH
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK----VEHNLKDLQSMIY 196 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~----i~~dv~~v~~~V~ 196 (257)
|..--|+|......+-++-++-..+.....+.+.++ +|+++ |..|+..|-..++
T Consensus 52 ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEi-GDveNWa~~iE~Dl~~i~~~L~ 109 (121)
T PF06320_consen 52 IEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEI-GDVENWAEMIERDLRVIEETLR 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666666666666666 55543 5556655544443
No 253
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.54 E-value=1.5e+02 Score=29.07 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK 172 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~ 172 (257)
+....+...+.++.-.+.+.+.+..+.++|+.+..++.......+.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 152 LTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333343334444445566666666666666666666655555443333
No 254
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=54.52 E-value=2.9e+02 Score=29.24 Aligned_cols=65 Identities=17% Similarity=0.296 Sum_probs=44.3
Q ss_pred hhHHHhhhhHHH----HHHHHHHhh---HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 025142 115 DLMYVTRKSMAT----AVSNLNKHL---ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (257)
Q Consensus 115 DlMfVTkr~ms~----Av~sv~kqL---eqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (257)
|+|+---..|+. .-.++++-. +...+.+...-.+|.|.+|.-|.+++++..+...++.++-.=.+
T Consensus 385 ~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee 456 (607)
T KOG0240|consen 385 DFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEE 456 (607)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455554455553 333344333 57788888899999999999999988888888777766544333
No 255
>TIGR02550 flagell_flgL flagellar hook-associated protein 3. This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; members of the family vary between 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC.
Probab=54.44 E-value=1.7e+02 Score=26.56 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHh-hhhcC
Q 025142 54 FTDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El-~La~s 74 (257)
+-.+++.+++.|.+++ .++..
T Consensus 105 ~~~~ia~e~~~l~~~i~~~~Nt 126 (306)
T TIGR02550 105 DRKAIAKEIKQLLDQLVNLANT 126 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 3458999999999999 87764
No 256
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=54.11 E-value=1.3e+02 Score=30.49 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQ 163 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLs---qRI~~vd~kld~~ 163 (257)
..+.+.+.++--+|+.+...|+.-...+. .|++.+..++...
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l 313 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQI 313 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 55666666666666666666666444433 3444444444333
No 257
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=54.02 E-value=1.6e+02 Score=27.73 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHh----HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 139 TEALTVAKKHLTQRIQNLNDK----VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 139 sesL~~tKkhLsqRI~~vd~k----ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
-++|+....++.+.|+.+..+ +-+.++....+.+++..+...++++..++.++.........+...+..+
T Consensus 16 p~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~ 89 (338)
T PF04124_consen 16 PQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEE 89 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556655554 3344666677777777777777777777777776666666666655444
No 258
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=53.73 E-value=2.3e+02 Score=27.94 Aligned_cols=63 Identities=8% Similarity=0.157 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
+....+.|...+..+....++....+.++.+...++....++....++.+...++.+...+.+
T Consensus 254 ~n~m~~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e 316 (553)
T PRK15048 254 VSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQ 316 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333333
No 259
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=53.64 E-value=54 Score=31.15 Aligned_cols=104 Identities=21% Similarity=0.316 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
-+.++++.....|+...+.|+..+.+|. .+|+.+..+.++...=...+++++.. ...-++.-..++.+|.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~-------~~~kl~rA~~Li~~L~ 290 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE-------TERKLERAEKLISGLS 290 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhccHHHHHhhhc
Confidence 3667777777777777777776665433 34444444444443333344444444 4444444555666665
Q ss_pred hh-------hhhhhhhhhhHhHHHHHHHHHhhcccCCcccch
Q 025142 200 GK-------IDSLADKQDITNIGMYLLCNFVDGKKGRTTESM 234 (257)
Q Consensus 200 ~K-------i~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~~ 234 (257)
+- +..++. +-.+.-|=-.||.++----|..|..+
T Consensus 291 ~E~~RW~~~~~~l~~-~~~~l~GD~llaaa~isY~G~f~~~~ 331 (344)
T PF12777_consen 291 GEKERWSEQIEELEE-QLKNLVGDSLLAAAFISYLGPFTPEY 331 (344)
T ss_dssp HHHHCCHCHHHHHHH-HHHHHHHHHHHHHHHHHCCCCTSHHH
T ss_pred chhhhHHHHHHHHHH-HhcccHHHHHHHHHHHHHcCCCCHHH
Confidence 53 344433 33333454555543322223444433
No 260
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=53.41 E-value=4.4 Score=33.75 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHh
Q 025142 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
+++.+..++++..+-.+.+..+|.+...+++.+...+..+...|..|+..+.++..++..-.
T Consensus 18 ~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~ 79 (138)
T PF06009_consen 18 RLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLE 79 (138)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666667666666777777777777777777777777666655443
No 261
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=53.28 E-value=1.6e+02 Score=26.09 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=31.1
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsq 151 (257)
|.+-|--.|+...+....+-+...+.+..+..+|+..-+
T Consensus 94 ~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~ 132 (236)
T cd07651 94 FASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEA 132 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567888888888888888888888888888887653
No 262
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=53.16 E-value=1.1e+02 Score=27.85 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=21.4
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 176 EACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
....++..|.+||+.|.+-|.+||.=|.
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888887664
No 263
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=53.14 E-value=1.8e+02 Score=27.29 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=35.4
Q ss_pred hhHHHhhhhHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHhhHHhHHHH
Q 025142 115 DLMYVTRKSMATAVSNLNKHLESVTEALTV-AKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVsesL~~-tKkhLsqRI~~vd~kld~~ 163 (257)
.+++..=.+..+.+..+.++++++.+.+-. .+++.-.||-.+.+.+=..
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~l 192 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYL 192 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 466677788999999999999999966655 4444667777766664433
No 264
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=52.98 E-value=69 Score=33.89 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=56.5
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhcc
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGK 226 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~ 226 (257)
.++.+..+-.+++.|..+-.++.+=+++-+.|++.|..|++.++..-..+.-++.- .|- . --.|-+|+++-
T Consensus 73 es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~N---rq~-v---~s~Ls~fVdd~ 143 (683)
T KOG1961|consen 73 ESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLEN---RQA-V---ESKLSQFVDDL 143 (683)
T ss_pred hhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHh---HHH-H---HHHHHHHhccc
Confidence 45678888999999999999999999999999999999999999888877766551 111 1 13567777763
No 265
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=52.61 E-value=1.1e+02 Score=27.98 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=44.1
Q ss_pred hhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH-HHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISK-DIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~-~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
|-|-.+||.|+++...+++.|..+++.=.. -|+.-+..|.+..+....+-. +-.+|...+.+-+...-.++++++.
T Consensus 48 ~~lv~~rkela~~~~~fs~al~~L~~~E~t---~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~ 124 (219)
T cd07621 48 DKMTRKHKDVADSYIKISAALTQLATSEPT---PLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKD 124 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 456668999999999999999888775321 333333333333332222222 2234555555666666666666654
Q ss_pred H
Q 025142 194 M 194 (257)
Q Consensus 194 ~ 194 (257)
+
T Consensus 125 ~ 125 (219)
T cd07621 125 L 125 (219)
T ss_pred H
Confidence 3
No 266
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=52.47 E-value=1.3e+02 Score=24.57 Aligned_cols=65 Identities=8% Similarity=0.053 Sum_probs=49.8
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhh-------hHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHh
Q 025142 151 QRIQNLNDKVEKQNEISKDIRKNVEEACD-------DLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~-------d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
++++.+|+++-.+.......-++++.-+. .-+.|..-...+...+...+.+|. +=|+|||++.
T Consensus 6 ~~L~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr----------~qI~~L~e~~ 75 (117)
T PF10280_consen 6 QQLNEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELR----------RQIKYLEEVS 75 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhc
Confidence 45777788888888888888788877766 567777777778777777777776 4489999987
Q ss_pred hc
Q 025142 224 DG 225 (257)
Q Consensus 224 ~~ 225 (257)
.+
T Consensus 76 ~~ 77 (117)
T PF10280_consen 76 II 77 (117)
T ss_dssp TT
T ss_pred cc
Confidence 65
No 267
>PRK01919 tatB sec-independent translocase; Provisional
Probab=52.37 E-value=1.7e+02 Score=26.08 Aligned_cols=32 Identities=6% Similarity=0.143 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRI 153 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI 153 (257)
+.|-.+..++++-+..+-..+...|.++..-+
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778888888888888888888877665
No 268
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=52.33 E-value=41 Score=38.22 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 164 NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.+-...|.+++.-...||+.+..++..|..++..|+.+++.|.
T Consensus 1252 E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1252 EETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344555666666677777777777777777777766554
No 269
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.29 E-value=1.4e+02 Score=25.10 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=48.2
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
..|++++..++|+..+|-..==++|-|=.+.|+.+.+--++++..-+..+.+=..+..|.=--|-....+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~i 97 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRII 97 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777778887777776666777777778888888777887777777766655555554444444443
No 270
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.15 E-value=2e+02 Score=29.53 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
+|++-+.-+.++|+-+.+|+..++.|++++
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555544
No 271
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=52.12 E-value=1.7e+02 Score=27.53 Aligned_cols=45 Identities=11% Similarity=0.238 Sum_probs=31.1
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
+.|..+-++-..++.++.+.++.|...++.....|+.--++++..
T Consensus 127 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l 171 (322)
T TIGR02492 127 ALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSL 171 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777788888888888888877777776665544444333
No 272
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=52.02 E-value=1.5e+02 Score=29.15 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=46.7
Q ss_pred hhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH---HHHHHHHHHHHH
Q 025142 98 LGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK---QNEISKDIRKNV 174 (257)
Q Consensus 98 vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~---~~eis~~i~~eV 174 (257)
.+++|-|+ +---..+|=|+.--.++.||-..++.-=.+|++.....+.-+.+.+++|++-.++ ..+..+.+++.+
T Consensus 74 ~aaigvG~--yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~ 151 (406)
T PF04906_consen 74 CAAIGVGF--YGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQA 151 (406)
T ss_pred HHHHHccc--ccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 35666542 2223356667776666777766666444455555455555566666666665533 334444445555
Q ss_pred HHhhhhHHHhh
Q 025142 175 EEACDDLFKVE 185 (257)
Q Consensus 175 ~~v~~d~~~i~ 185 (257)
+.+-..++.|.
T Consensus 152 ~~v~~~l~~l~ 162 (406)
T PF04906_consen 152 ENVVQQLDELP 162 (406)
T ss_pred HHHHHHHhcCc
Confidence 55555554443
No 273
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.85 E-value=2e+02 Score=26.68 Aligned_cols=79 Identities=11% Similarity=0.215 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTV-----------AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~-----------tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.|+++.+.++..+|..+.++.. .-+....-++.+-.-+.+-. +++.++...++.+..-..|=+.+
T Consensus 107 ~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~----~~Q~~le~k~e~l~k~~~dr~~~ 182 (243)
T cd07666 107 ELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRD----QIQAELDSKVEALANKKADRDLL 182 (243)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHH
Confidence 3555555555555555544444 33333333333333222221 33444555555555555555566
Q ss_pred HHHHHhhhhhhhhh
Q 025142 192 QSMIYCLDGKIDSL 205 (257)
Q Consensus 192 ~~~V~~Le~Ki~~i 205 (257)
..-|+.||.|++.-
T Consensus 183 ~~ev~~~e~kve~a 196 (243)
T cd07666 183 KEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666543
No 274
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=51.84 E-value=3.1e+02 Score=28.82 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhHHhHHHH
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~ 163 (257)
..=|+|...||..|..+|-+.
T Consensus 42 ~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 42 KEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666554
No 275
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.79 E-value=1.4e+02 Score=24.93 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (257)
..|++++..+++..+.+++.....-++. ...+.+-|++.......++
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~L~~y~~~~~s~k 106 (218)
T cd07596 60 GELGEALSKLGKAAEELSSLSEAQANQE---LVKLLEPLKEYLRYCQAVK 106 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHH
Confidence 4678888888888888777766654444 3334444555544444444
No 276
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.55 E-value=1.3e+02 Score=29.98 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 161 EKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 161 d~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.+..++...+.++..+++.........+..+++.+..|+.++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444455555544444444444444444444444444443
No 277
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=51.50 E-value=1.6e+02 Score=31.47 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
|.+++-...+.+.+...+.++...|++. .++.+.|--++++....-++|+..+.+.+..++...+-...++.=...|
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777653 3455555555666666666666666666655555555555555555555
Q ss_pred hhhhhhh
Q 025142 199 DGKIDSL 205 (257)
Q Consensus 199 e~Ki~~i 205 (257)
-.|+.++
T Consensus 614 ~~kle~~ 620 (698)
T KOG0978|consen 614 KRKLERL 620 (698)
T ss_pred HHHHHHh
Confidence 5555544
No 278
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=51.47 E-value=2e+02 Score=28.15 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh--hhHH---HHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE--HNLK---DLQSMIY 196 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~--~dv~---~v~~~V~ 196 (257)
+-++.+|+.+....+..-+-|+.+ ..++.+-...+.++..++.+.|.+-+. +++..| ++|+ .+..-|+
T Consensus 86 ~~l~~~v~d~~rri~~~kerL~e~---~ee~~~e~~~k~~~v~~l~e~I~~~l~----~~E~LG~eG~Veeaq~~~~e~E 158 (319)
T KOG0796|consen 86 EILERFVADVDRRIEKAKERLAET---VEERSEEAARKAEKVHELEEKIGKLLE----KAEELGEEGNVEEAQKAMKEVE 158 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcCCHHHHHHHHHHHH
Confidence 345556666666655555555555 224555555554444444444333332 223333 2222 2333344
Q ss_pred hhhh-hhhhhhhhhhhHhHHH------HHHHHHhh
Q 025142 197 CLDG-KIDSLADKQDITNIGM------YLLCNFVD 224 (257)
Q Consensus 197 ~Le~-Ki~~ie~kQd~tn~GV------~~Lc~f~~ 224 (257)
.|.. ++...+.--..++.+. .-+|+.|+
T Consensus 159 ~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCG 193 (319)
T KOG0796|consen 159 ELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCG 193 (319)
T ss_pred HHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhh
Confidence 4443 3444444444455555 67898886
No 279
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=51.35 E-value=1.2e+02 Score=23.73 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHhHHHH
Q 025142 188 LKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
.+.+..-+..|-.+|..+|....-...-+.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444333333333333
No 280
>PF13514 AAA_27: AAA domain
Probab=51.24 E-value=2.3e+02 Score=31.14 Aligned_cols=164 Identities=18% Similarity=0.281 Sum_probs=0.0
Q ss_pred chhhhheeccccceeeeccCCCchhHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhhhhcCCCeEEEeCCCCCcc
Q 025142 9 FQKILMLAGLGYTGTILVKDGKLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNRLKFECQRASSGQIFVRNENSGGNA 88 (257)
Q Consensus 9 l~kv~iLvGAG~~GSvl~k~GkLsd~~g~lq~~lk~~~k~gd~~~~~d~L~aQV~~L~~El~La~sr~iTVvn~~sGg~~ 88 (257)
+|..++=+|+|+.+ |+++...|..-...+=|.....|....+..+++.+.++|.-+..++ ..|
T Consensus 114 lg~~Lf~agaG~~~--------l~~~~~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~---------~~y 176 (1111)
T PF13514_consen 114 LGQLLFSAGAGLGS--------LSQVLKQLDKEADELFKPRGRKPEINQALKELKELERELREAEVRA---------AEY 176 (1111)
T ss_pred HHHHHHHhcccccc--------HHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccH---------HHH
Q ss_pred eeehhhhhHhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHhhHHhHH--
Q 025142 89 TSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKH-----LTQRIQNLNDKVE-- 161 (257)
Q Consensus 89 s~~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkh-----LsqRI~~vd~kld-- 161 (257)
..+.- .+......+..+-+++..+...+..-.+- +-.+++.+..+|+
T Consensus 177 ~~l~~--------------------------~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l 230 (1111)
T PF13514_consen 177 QELQQ--------------------------ALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAEL 230 (1111)
T ss_pred HHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q ss_pred -HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHH
Q 025142 162 -KQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIG 215 (257)
Q Consensus 162 -~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G 215 (257)
+...+-..-.++...+...+......+..++.-+..|+.+++.+.....+-...
T Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~ 285 (1111)
T PF13514_consen 231 GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHA 285 (1111)
T ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhH
No 281
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=51.18 E-value=97 Score=27.06 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+.--++|..|=|.|..+|....++.+.-.+=++.+.-=++-+.+|+..+
T Consensus 97 re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v 145 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQV 145 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3334445555555555555554444444444444433344445555555
No 282
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.11 E-value=2.5e+02 Score=28.84 Aligned_cols=78 Identities=19% Similarity=0.427 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 122 KSMATAVSNLNKHLESVT---EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVs---esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
|-+-..+..+-+.|+.+- +.|.+-.+.|.+|-+++|.++++- ++.+=.++..+.++...+.+.++..+..|
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a------v~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA------VQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH------HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444333 233344444555555555544432 22222344445556666666666666666
Q ss_pred hhhhhhh
Q 025142 199 DGKIDSL 205 (257)
Q Consensus 199 e~Ki~~i 205 (257)
..+++.+
T Consensus 136 ~~~l~~~ 142 (472)
T TIGR03752 136 QRRLAGV 142 (472)
T ss_pred HHHHhhc
Confidence 6666543
No 283
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=51.07 E-value=2.4e+02 Score=30.48 Aligned_cols=117 Identities=8% Similarity=0.028 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHHHh-hhhcCCCeEEEeCCCCCcceeehhhhhHhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHH
Q 025142 54 FTDAIKDQLNRLKFEC-QRASSGQIFVRNENSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLN 132 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El-~La~sr~iTVvn~~sGg~~s~~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~ 132 (257)
-+..+.++++.|++.+ ++.++ ++ .+..+.-|. - .|.-|-.+-..|=+|.+=|..-+-...+.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (910)
T TIGR00833 520 NLGQVSLAVRLMQQAISKLQGS-----AG-----DVFDIFDPL--R-----RFVAAIPECRANPVCSVAREIVQAADTVV 582 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHH--H-----HHhccCCCcccChHHHHHHHHHHHHHHHH
Confidence 3556666777777777 55444 11 011122221 1 12345666677777776665444444444
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhH
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv 188 (257)
.++.++.+.+....+ ...-++..-..|....+-.+++++.+.+++..++++..-+
T Consensus 583 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (910)
T TIGR00833 583 SSAAKLADAAGQLAR-GIADVASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLL 637 (910)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433322 1111222333334444444455555555555555444333
No 284
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=50.89 E-value=14 Score=29.52 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=12.6
Q ss_pred hHhhhhheeeeEeecCCc
Q 025142 96 ATLGALGYGYMWWKGLSF 113 (257)
Q Consensus 96 A~vGavGYgYmwWKGws~ 113 (257)
+++.++=++|.|||-|+.
T Consensus 11 ~~v~~~i~~y~~~k~~ka 28 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKKA 28 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566678999998753
No 285
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=50.82 E-value=78 Score=28.74 Aligned_cols=58 Identities=12% Similarity=0.291 Sum_probs=35.9
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh--HHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDD--LFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d--~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
|...|.++..|+...+........|+.++..- +++++..+++++..|.+.+.||..+.
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555543 34577777777777777777777664
No 286
>PRK15396 murein lipoprotein; Provisional
Probab=50.61 E-value=75 Score=24.84 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=17.9
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
|+..++.|..|.|+...-....+.++...+++-.+-
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ra 65 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666655444444455554444444333
No 287
>PRK14011 prefoldin subunit alpha; Provisional
Probab=50.19 E-value=1.6e+02 Score=25.16 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=27.7
Q ss_pred HhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 025142 97 TLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 97 ~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld 161 (257)
++..||.||.- -+++.+|..-..+..+.+ .++++.|..+|+.+...++
T Consensus 72 VlVdIGtGy~V-------------Ek~~~eA~~~~~~ri~~l----~~~~~~l~~~i~~~~~~~~ 119 (144)
T PRK14011 72 AILGVGSDIYL-------------EKDVSEVIEDFKKSVEEL----DKTKKEGNKKIEELNKEIT 119 (144)
T ss_pred EEEEccCCeEE-------------EecHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34578999864 556777877776665543 3344444444444444433
No 288
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.17 E-value=66 Score=34.63 Aligned_cols=20 Identities=5% Similarity=0.119 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhHHhHHHHH
Q 025142 145 AKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~ 164 (257)
....+..+|.++|++++...
T Consensus 41 li~ki~~eir~~d~~l~~~V 60 (793)
T KOG2180|consen 41 LIQKIQGEIRRVDKNLLAVV 60 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666543
No 289
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=50.12 E-value=1.1e+02 Score=23.12 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=8.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 025142 130 NLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsq 151 (257)
.+-.+++++.+.+...-+.+-+
T Consensus 7 ~i~~~v~~v~~im~~Ni~~ll~ 28 (89)
T PF00957_consen 7 QIQEQVEEVKNIMRENIDKLLE 28 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333
No 290
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=50.11 E-value=1.5e+02 Score=24.65 Aligned_cols=44 Identities=11% Similarity=0.292 Sum_probs=31.6
Q ss_pred HHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHhhHHhHHHHHHHHHH
Q 025142 126 TAVSNLNKHLESVTEALT-----VAKKHLTQRIQNLNDKVEKQNEISKD 169 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~-----~tKkhLsqRI~~vd~kld~~~eis~~ 169 (257)
+.+.++-..|-++.-.+. ..+..|.+||+.+...|++..++...
T Consensus 3 ~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 3 QQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444443 67889999999999999999888887
No 291
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.04 E-value=91 Score=30.14 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhcCCCCCchHHHHHHHHHH------HHHhhhhcCCCeE
Q 025142 37 ELQSLVERLSKSGEQDNFTDAIKDQLNRL------KFECQRASSGQIF 78 (257)
Q Consensus 37 ~lq~~lk~~~k~gd~~~~~d~L~aQV~~L------~~El~La~sr~iT 78 (257)
.+..++|+|++ +.=..+.|..+..=| .+||+.|..|..|
T Consensus 4 li~~AVkFL~~---~kVr~aPli~kr~FLksKGLT~eEI~eAfk~~gi 48 (300)
T KOG2629|consen 4 LIENAVKFLQN---PKVRDAPLIKKREFLKSKGLTEEEIQEAFKRDGI 48 (300)
T ss_pred HHHHHHHHhcC---cccccchHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 46788888863 221123344444444 3677777766333
No 292
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=50.00 E-value=2.3e+02 Score=26.78 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=36.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025142 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 132 ~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
.++|++.-+.|.+.+.....++..|...+++.+.-...+++||.-++
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888887777777776553
No 293
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=49.98 E-value=92 Score=22.20 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHH
Q 025142 159 KVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 159 kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
-+++..++..+|.+++..=++-+..
T Consensus 16 ~~~e~~~~g~~~l~~L~~Qre~L~~ 40 (66)
T PF12352_consen 16 MADETEEIGAATLEDLRSQREQLKR 40 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333333
No 294
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=49.92 E-value=1.1e+02 Score=29.03 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 139 TEALTVAKKHLTQR---IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 139 sesL~~tKkhLsqR---I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
+..|+..-||+.+. |..-|+.|=+.-|.+-..-+||.+++.|-.+|..+++.|-..-..||.-++.+|.+
T Consensus 84 s~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k 156 (254)
T KOG2196|consen 84 SLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETK 156 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888775 45557788888888889999999999999999999999988888888888888855
No 295
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.79 E-value=89 Score=30.72 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHH
Q 025142 188 LKDLQSMIYCLDGKIDSLADKQDITNIGMYLLC 220 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 220 (257)
.+++..-+..|-.+|..+|.+......-+..++
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 296
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=49.46 E-value=1.7e+02 Score=27.39 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHH-HHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQN-EISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~~-eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
|-.+...+-..|+.|...-+-+...+.... .+.+.+++...++.+++.+..+.++..+++++.|-+-..++-
T Consensus 182 l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~i 254 (322)
T COG0598 182 LGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLI 254 (322)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555554444444433333 455566666666666666666666666666666555444443
No 297
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=49.39 E-value=82 Score=23.43 Aligned_cols=44 Identities=16% Similarity=0.362 Sum_probs=22.2
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.|.-||...++.+++.+++.-.=+.++..++..+..+..-++++
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555555555555555554444444
No 298
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=49.38 E-value=2.1e+02 Score=27.36 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH----------HhhhhHHHhhh
Q 025142 122 KSMATAVSNLNKHLESVTEALTV-----AKKHLTQRIQNLNDKVEKQNEISKDIRKNVE----------EACDDLFKVEH 186 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~-----tKkhLsqRI~~vd~kld~~~eis~~i~~eV~----------~v~~d~~~i~~ 186 (257)
...++..+.+++.+|+++..+=. .-+++-++|-++.+-.-+..++.-.++.-+. +.++.+..+.+
T Consensus 142 d~~ad~lE~~~~~ld~ls~~if~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~~~~~~~~~~~~~~ 221 (316)
T PRK11085 142 EQLADEIENIYSDLEKLSRVIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQAREILR 221 (316)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHH
Confidence 34566666777777777766643 1123334444444444333333322222111 11123444555
Q ss_pred hHHHHHHHHHhhhhhhhhh
Q 025142 187 NLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~i 205 (257)
|++++..-...+..++..+
T Consensus 222 Di~~l~~~~~~~~~~~~~l 240 (316)
T PRK11085 222 DIESLLPHNESLFQKVNFL 240 (316)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 299
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=49.36 E-value=77 Score=33.54 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=25.0
Q ss_pred CCcchhHHHhhh--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025142 111 LSFADLMYVTRK--SMATAVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (257)
Q Consensus 111 ws~sDlMfVTkr--~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~ 154 (257)
|.++|.-|...+ ..-+|+..+..+++|+-+-+..+|.-|.+=.+
T Consensus 12 i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~ 57 (683)
T PF08580_consen 12 ILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLRE 57 (683)
T ss_pred cccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 22334444555777777778888777665433
No 300
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=49.25 E-value=1.8e+02 Score=25.73 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=48.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhH-----HHHHHHHHHHHHHHHHhhhhHHHhhhh----HHHHHHHHHhhhhhh
Q 025142 132 NKHLESVTEALTVAKKHLTQRIQNLNDKV-----EKQNEISKDIRKNVEEACDDLFKVEHN----LKDLQSMIYCLDGKI 202 (257)
Q Consensus 132 ~kqLeqVsesL~~tKkhLsqRI~~vd~kl-----d~~~eis~~i~~eV~~v~~d~~~i~~d----v~~v~~~V~~Le~Ki 202 (257)
-++|..--..|+.||.+|.+.|++-..-+ +.+.-.-...-..|+++...|+.|..| +..+++.-...+.=|
T Consensus 6 ~~kL~D~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eFi 85 (157)
T PF04778_consen 6 DKKLTDNDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEFI 85 (157)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444445567777777777777655443 233333344556677777777777665 445555555555555
Q ss_pred hhhhhhhhhH
Q 025142 203 DSLADKQDIT 212 (257)
Q Consensus 203 ~~ie~kQd~t 212 (257)
.....+++++
T Consensus 86 ~~~K~NpnY~ 95 (157)
T PF04778_consen 86 NKNKNNPNYA 95 (157)
T ss_pred hhccCCccHH
Confidence 5556666666
No 301
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.15 E-value=1.1e+02 Score=22.69 Aligned_cols=14 Identities=0% Similarity=0.057 Sum_probs=5.0
Q ss_pred HhhhhHHHhhhhHH
Q 025142 176 EACDDLFKVEHNLK 189 (257)
Q Consensus 176 ~v~~d~~~i~~dv~ 189 (257)
.++...++|+.+++
T Consensus 18 tvk~en~~i~~~ve 31 (55)
T PF05377_consen 18 TVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 302
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.03 E-value=1.3e+02 Score=23.78 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=21.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 155 NLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 155 ~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.|..|+.+..+.+...+-||.+++++=.....+++.++.-=..|+.+-..+
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qL 58 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444455555554444444444444333333333333333
No 303
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=48.96 E-value=2.7e+02 Score=31.00 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=67.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
-+.+++-|-+.-+-+...+++|.--=+....-+.+..+..+-...++.+.......|+.++..-+..+++++.|+..+|.
T Consensus 279 ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 279 NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 34455566665555555555555444444444445555555666778888888888999999999999999999999999
Q ss_pred hhhhHhHHHHHHHH
Q 025142 208 KQDITNIGMYLLCN 221 (257)
Q Consensus 208 kQd~tn~GV~~Lc~ 221 (257)
+-+.+.+-+.-|-+
T Consensus 359 krd~al~dvr~i~e 372 (1265)
T KOG0976|consen 359 KRDMALMDVRSIQE 372 (1265)
T ss_pred HHHHHHHhHHHHHH
Confidence 99998888877655
No 304
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.94 E-value=2.2e+02 Score=26.22 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHhhhhHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 117 MYVTRKSMATAVSNLNKHLESVTEA-----LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 117 MfVTkr~ms~Av~sv~kqLeqVses-----L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+--+||.|+.+.+.+++.+.++++. |+.+-++|...++.+.+-...|. ..++..+.+-+..+-.|+..|
T Consensus 44 lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~~~QA------~~d~~tl~d~L~~~~~~~~~v 117 (230)
T cd07625 44 VSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDIDSIQA------TVDMATLYDGLEWISRDAYVV 117 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999888754 56777777777776665543332 344555555555555555555
Q ss_pred HHH
Q 025142 192 QSM 194 (257)
Q Consensus 192 ~~~ 194 (257)
+.+
T Consensus 118 Kea 120 (230)
T cd07625 118 KEA 120 (230)
T ss_pred HHH
Confidence 433
No 305
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=48.85 E-value=2.7e+02 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=23.8
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTV 144 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~ 144 (257)
++..+-.-=..|++-.+|+++|-|+=..++.-
T Consensus 197 i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~ 228 (412)
T PF04108_consen 197 ILKELHSLEQEMASLLESLTNHFDQCVTAVRH 228 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445588999999999999888777773
No 306
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.61 E-value=1.6e+02 Score=26.19 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=43.4
Q ss_pred hhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH-HHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS-KDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis-~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
|-|--+||.|++++..+++.|..++..=..+-+-|+.=+..+.+-.+...++. .+-.++...+.+.+...-.++++++.
T Consensus 28 ~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~ 107 (198)
T cd07630 28 LKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKD 107 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45666899999999999999987765422221122222222222222222111 12235566666666666666666665
Q ss_pred HH
Q 025142 194 MI 195 (257)
Q Consensus 194 ~V 195 (257)
+.
T Consensus 108 ~l 109 (198)
T cd07630 108 ML 109 (198)
T ss_pred HH
Confidence 54
No 307
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=48.55 E-value=2.4e+02 Score=26.55 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=18.7
Q ss_pred CchHHHHHHHHHHHHHh-hhhcC
Q 025142 53 NFTDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~La~s 74 (257)
.+-.+|+.+++.|.+|| .++.+
T Consensus 105 ~dr~aia~Ei~~l~~~l~~~aNt 127 (317)
T PRK08027 105 DDRASLATDLQGLRDQLLNLANT 127 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 44568999999999999 88874
No 308
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.31 E-value=84 Score=32.37 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=47.6
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhH
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
+.|.+|+.-=|...+.-.+..+.|.++|++++.--...---|...++.-..|+.||=+|--||...
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeil 402 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEIL 402 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888887777777778888888888888874444445556667777777777777776666543
No 309
>PRK00846 hypothetical protein; Provisional
Probab=48.23 E-value=1.3e+02 Score=23.50 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=19.2
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
.|.-|+..-++.+|+.++..-.-+.++..++.-+..+.+-++.
T Consensus 17 ~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 17 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443333
No 310
>PHA03395 p10 fibrous body protein; Provisional
Probab=48.22 E-value=83 Score=25.30 Aligned_cols=21 Identities=5% Similarity=0.286 Sum_probs=10.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 025142 126 TAVSNLNKHLESVTEALTVAK 146 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~~tK 146 (257)
++++.+...++.+..++...+
T Consensus 11 ~dIkavd~KVdalQ~~V~~l~ 31 (87)
T PHA03395 11 QDIKAVSDKVDALQAAVDDVR 31 (87)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 445555555554444444443
No 311
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.13 E-value=1.9e+02 Score=25.28 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
..+++..++..+......+..++..+..|+.||..+..+.+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777776655
No 312
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.94 E-value=1.1e+02 Score=25.27 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqR 152 (257)
-|+++-++++.+.+|+.++++.+++-|.++..=
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~el 34 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAEL 34 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888888888888877777666544
No 313
>PRK12805 flagellin; Provisional
Probab=47.71 E-value=2.3e+02 Score=26.18 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=23.1
Q ss_pred CchHHHHHHHHHHHHHh-hhhcC---CCeEEEeC
Q 025142 53 NFTDAIKDQLNRLKFEC-QRASS---GQIFVRNE 82 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~La~s---r~iTVvn~ 82 (257)
.+-.+++.+++.|.++| .++.+ ...-++.|
T Consensus 105 ~dr~ai~~Ei~~l~~~i~~~an~~~~nG~ylf~G 138 (287)
T PRK12805 105 EDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQ 138 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeeecCC
Confidence 35678999999999999 88874 35556654
No 314
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=47.63 E-value=2.5e+02 Score=26.63 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 140 esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
+.|....+.+.+.+..+...-++..+-.+..+++..++...-.+.-.+...++.-...++.+.++++..-++++.=+..|
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666667766666666555555555555555555555555555555555555566666555555555544444
No 315
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=47.61 E-value=1.8e+02 Score=30.44 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=23.8
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 178 CDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+.|+.+|-.|...||.-++.|.+|++|=-
T Consensus 504 k~eI~KIl~DTr~lQkeiN~l~gkL~RtF 532 (594)
T PF05667_consen 504 KEEIEKILSDTRELQKEINSLTGKLDRTF 532 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56678888888889999999999998753
No 316
>PRK11032 hypothetical protein; Provisional
Probab=47.47 E-value=70 Score=28.06 Aligned_cols=86 Identities=16% Similarity=0.271 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH----hhhhHHHhhhhHHHHH------HHHHhhh-----
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE----ACDDLFKVEHNLKDLQ------SMIYCLD----- 199 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~----v~~d~~~i~~dv~~v~------~~V~~Le----- 199 (257)
|++|.+.|....+.|..-|+...+.+.+. .+.|++|+.. +++|++++...+..=. -....++
T Consensus 12 l~~v~~~l~~~~~~l~~~ve~a~~~~~~~---~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~~~~~i~~slw~ 88 (160)
T PRK11032 12 VASLTERLRNGERDIDALVESARKRVDAA---GELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVFMRVIKESLWQ 88 (160)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 56666666666655555555555554444 4445555443 5677777766433210 0012222
Q ss_pred --------hhhhhhhhhhhhHhHHHHHHHHHh
Q 025142 200 --------GKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 200 --------~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
.+++-.|-.||+..+|+|.=-+.+
T Consensus 89 ~L~~ItDrTqvEw~el~~dl~h~g~Y~sGEvv 120 (160)
T PRK11032 89 ELADITDKTQLEWREVFQDLNHHGVYHSGEVV 120 (160)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhcCeeecceee
Confidence 234445566788888887654444
No 317
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=47.46 E-value=64 Score=23.62 Aligned_cols=29 Identities=10% Similarity=0.409 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
|+|+.+..+..-..+..|||.+..++|+.
T Consensus 12 L~qmq~kFq~mS~~I~~riDeM~~RIDdL 40 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRIDEMSSRIDDL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44455555555555666666666666654
No 318
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=47.03 E-value=1.4e+02 Score=26.48 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=18.1
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
++++..+.+++.. -..+...|..++.+|.+|++++
T Consensus 124 e~~~k~L~d~Iv~----~~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 124 ETEVKKLKDNIVT----EKLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHhHhhhccc----cHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 1345555566666666666654
No 319
>PRK01156 chromosome segregation protein; Provisional
Probab=47.03 E-value=2.6e+02 Score=29.62 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHh
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~k 159 (257)
.++..++.+..+.+.+..+|..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~ei~~le~~ 188 (895)
T PRK01156 163 SLERNYDKLKDVIDMLRAEISNIDYL 188 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655555443
No 320
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=46.92 E-value=1.2e+02 Score=22.55 Aligned_cols=16 Identities=6% Similarity=0.148 Sum_probs=6.0
Q ss_pred HhhhhHHHhhhhHHHH
Q 025142 176 EACDDLFKVEHNLKDL 191 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v 191 (257)
.+..++.++..||+.+
T Consensus 14 ~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 321
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=46.54 E-value=1.4e+02 Score=25.14 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 139 sesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
++.+...++.|.+.++..-..++. .++|+......+++-...+++++..+..++..+.+.+.+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~l-------Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLEL-------LQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555543333332 244455555555555566666777777777766665555
No 322
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=46.37 E-value=1e+02 Score=27.87 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=42.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 025142 131 LNKHLESVTEALTVAKKHLTQRIQNL---NDKVEKQNEISKDIRKNVEEACDDLFKVEH 186 (257)
Q Consensus 131 v~kqLeqVsesL~~tKkhLsqRI~~v---d~kld~~~eis~~i~~eV~~v~~d~~~i~~ 186 (257)
+.-.++|+..++..+|+=++.-|+.+ |+|||.+..++..+.-++.-++....+++.
T Consensus 127 ~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~ 185 (190)
T COG5143 127 IQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNL 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44457888888888888888888877 677888988888888887766655555443
No 323
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=46.28 E-value=1.1e+02 Score=29.54 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=22.7
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 176 EACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
|++--|.+-+.+|++++++|+++-..|..
T Consensus 114 EAQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 114 EAQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 45556777899999999999988777663
No 324
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.02 E-value=3e+02 Score=31.52 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|...-+...+.++.+..+|.+.+.++..+-+.+++. ++-....++|..++..++.+......+++.....+..|+.
T Consensus 512 L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~----k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrve 587 (1293)
T KOG0996|consen 512 LLSRHETGLKKVEELKGKLLASSESLKEKKTELDDL----KEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVE 587 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777766666554443332 3333344445555555555555555555555555555554
Q ss_pred hhhh---hhhhHhHHHHHHHHH-----hhcccCCcccc
Q 025142 204 SLAD---KQDITNIGMYLLCNF-----VDGKKGRTTES 233 (257)
Q Consensus 204 ~ie~---kQd~tn~GV~~Lc~f-----~~~~~~~~~~~ 233 (257)
+... .+..-|.=+..|.+- +.|.-|++.+.
T Consensus 588 E~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDL 625 (1293)
T KOG0996|consen 588 EAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDL 625 (1293)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccc
Confidence 4332 333344444444432 23444555553
No 325
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=45.96 E-value=2.7e+02 Score=29.37 Aligned_cols=84 Identities=13% Similarity=0.253 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
+.-|..-|.++-+|||+--.-+... +|=.+.+..++-+|.|....++.+-+.++....+|..+++...+-|...-.
T Consensus 416 ~~~~~e~~~~L~qqlD~kd~~~n~~----sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~ 491 (607)
T KOG0240|consen 416 EDILTERIESLYQQLDQKDDQINKQ----SQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLT 491 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777888888888777666544 344455555666666777666666666666666666666666555555555
Q ss_pred hhhhhhhh
Q 025142 201 KIDSLADK 208 (257)
Q Consensus 201 Ki~~ie~k 208 (257)
.+.++..+
T Consensus 492 al~el~~~ 499 (607)
T KOG0240|consen 492 ALEELAVN 499 (607)
T ss_pred HHHHHHHh
Confidence 55544433
No 326
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=45.92 E-value=1.7e+02 Score=24.07 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~ 155 (257)
++...+++..|..+...|+...++|.+-+-.
T Consensus 25 ~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~ 55 (132)
T PF10392_consen 25 SDSELDISTPLKKLNFDIQELDKRIRSQVTS 55 (132)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344456666666666666666666555543
No 327
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=45.70 E-value=2.2e+02 Score=25.58 Aligned_cols=67 Identities=15% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH-HHHHHHHhhhhHHHhhhhHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD-IRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~-i~~eV~~v~~d~~~i~~dv~~ 190 (257)
+.+.-+.+.+++..-.+.++.+-+.|..||..|...+.+..+-... |...-..+..++..+...++.
T Consensus 72 i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 72 INNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
No 328
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=45.68 E-value=3.1e+02 Score=32.89 Aligned_cols=46 Identities=24% Similarity=0.443 Sum_probs=21.3
Q ss_pred hHHHhhhhHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHhhHHhHH
Q 025142 116 LMYVTRKSMATAVSNLNKHLESVTE---ALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 116 lMfVTkr~ms~Av~sv~kqLeqVse---sL~~tKkhLsqRI~~vd~kld 161 (257)
.++.-|-.+..-+..+..+++...+ .+...++.+.+.++.+.+.++
T Consensus 898 ~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~ 946 (1930)
T KOG0161|consen 898 RLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLE 946 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544443 344444444444444444444
No 329
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=45.66 E-value=2.6e+02 Score=26.11 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=5.5
Q ss_pred HHHHHHHHhhHHhH
Q 025142 147 KHLTQRIQNLNDKV 160 (257)
Q Consensus 147 khLsqRI~~vd~kl 160 (257)
..++.+|+.+..++
T Consensus 62 ~~~e~ei~~~r~r~ 75 (239)
T COG1579 62 SQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 330
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=45.56 E-value=1.4e+02 Score=31.94 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH 186 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~ 186 (257)
++-|.+|.+-|+.+.-|+++++....+-|.|+..++..+++.+.
T Consensus 99 e~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~ 142 (907)
T KOG2264|consen 99 EVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQR 142 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Confidence 34456677777777777777766666666555555554444443
No 331
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.52 E-value=86 Score=26.23 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (257)
..|.+|...==|-+.|+-+.|+.--.+|+++.++|.--|.+..+|...++
T Consensus 57 EeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~ 106 (120)
T KOG4559|consen 57 EEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTD 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35777777777788888888888888888888888777777766666554
No 332
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.27 E-value=80 Score=25.91 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHhhHHHH
Q 025142 121 RKSMATAVSNLNKHLESVT 139 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs 139 (257)
|....+|.+.+.+.+|-..
T Consensus 66 ~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 66 KVDKTKVEKELKERKELLE 84 (121)
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 4477788777777776655
No 333
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.24 E-value=1.9e+02 Score=25.13 Aligned_cols=52 Identities=17% Similarity=0.357 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 140 esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
..+.....+|..||..++..+.+.....+.++||...++--+.....-+..+
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777777777777777777777777776666555555444444
No 334
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.19 E-value=3.6e+02 Score=27.64 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 025142 136 ESVTEALTVAKKHLT 150 (257)
Q Consensus 136 eqVsesL~~tKkhLs 150 (257)
+++.+.+...+..+.
T Consensus 39 ~~~~~~~~~~~~~~~ 53 (475)
T PRK10361 39 EEMVAELSAAKQQIT 53 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 335
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=45.00 E-value=1.4e+02 Score=30.53 Aligned_cols=6 Identities=0% Similarity=0.639 Sum_probs=2.2
Q ss_pred HHHHHH
Q 025142 170 IRKNVE 175 (257)
Q Consensus 170 i~~eV~ 175 (257)
++.+++
T Consensus 136 L~~~i~ 141 (779)
T PRK11091 136 LKNEIK 141 (779)
T ss_pred HHHHHH
Confidence 333333
No 336
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=44.65 E-value=2.8e+02 Score=29.00 Aligned_cols=92 Identities=23% Similarity=0.293 Sum_probs=45.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh-------hhHHHhhhhHHHHHHHHHhhhh
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC-------DDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~-------~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
.+.+-.+++.+++-+++| +++++.|+.++.|-.+++.=.--.+.-|..++ +.+++...++.....-+..|-.
T Consensus 273 i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~ 351 (622)
T COG5185 273 IANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQS 351 (622)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 344445566677777777 45788888888775444332222222222222 2333444444444444444444
Q ss_pred hhhhhh---hhhhhHhHHHHHHH
Q 025142 201 KIDSLA---DKQDITNIGMYLLC 220 (257)
Q Consensus 201 Ki~~ie---~kQd~tn~GV~~Lc 220 (257)
+++++. .||++...-+....
T Consensus 352 ~~d~L~~q~~kq~Is~e~fe~mn 374 (622)
T COG5185 352 NIDELHKQLRKQGISTEQFELMN 374 (622)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHH
Confidence 444433 26666655555443
No 337
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=44.58 E-value=2.6e+02 Score=28.37 Aligned_cols=74 Identities=22% Similarity=0.419 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH--HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ--NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~--~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
++.++.+.++-..+...+..+ ++|..|.+.+.+.+++. .++...++.++.+.-.++..+..+++........|+
T Consensus 28 ~eV~~~I~~~y~df~~~~~~~-~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~ 103 (593)
T PF06248_consen 28 EEVHSMINKKYSDFSPSLQSA-KDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE 103 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555444444 34566666666666333 225566667777777777777777776666666555
No 338
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=44.46 E-value=2e+02 Score=34.14 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=51.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh-------HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDK-------VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k-------ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
......+++.+...|+..|+||....+.+-.- +..-.-.......+...+..+++....++..+..-+..|+.
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k 879 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK 879 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455899999999999999999887765432 22222333333444555555555556666666666666666
Q ss_pred hhhhhhhhh
Q 025142 201 KIDSLADKQ 209 (257)
Q Consensus 201 Ki~~ie~kQ 209 (257)
+|.+.+...
T Consensus 880 ~l~~~~~~~ 888 (1822)
T KOG4674|consen 880 RLKSAKTQL 888 (1822)
T ss_pred HHHHhHHHH
Confidence 666655443
No 339
>PRK04654 sec-independent translocase; Provisional
Probab=44.30 E-value=2.1e+02 Score=26.49 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~ 154 (257)
+.|-.+...+++-+..+-.....+|.++.+-++
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 446667777777777777777777777766543
No 340
>PLN02320 seryl-tRNA synthetase
Probab=44.13 E-value=1.2e+02 Score=31.14 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=51.9
Q ss_pred EeecCCcchhHHHhhhhHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025142 107 WWKGLSFADLMYVTRKSMATAVSNLNKH-----LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 107 wWKGws~sDlMfVTkr~ms~Av~sv~kq-----LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
-||- .-|+=|. |.|-.....++.+- +|++- ++-..+|.+.++++.+..+ .++++++|+. ..-.++.
T Consensus 62 ~~~~--mlD~k~i-r~n~~~v~~~l~~R~~~~~vd~l~-~ld~~~r~~~~~~~~lr~e---rn~~sk~i~~--~~~~~~~ 132 (502)
T PLN02320 62 QWKA--AIDFKWI-RDNKEAVAINIRNRNSNANLELVL-ELYENMLALQKEVERLRAE---RNAVANKMKG--KLEPSER 132 (502)
T ss_pred cccc--ccCHHHH-HhCHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHh--hhCCCCH
Confidence 3776 3566665 55655555555443 34332 3444566666666665544 5566777765 1222445
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
+.+..+++.+.+-+..||.++..++.+..
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQ 161 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666665555443
No 341
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.11 E-value=2.5e+02 Score=27.26 Aligned_cols=104 Identities=13% Similarity=0.262 Sum_probs=74.0
Q ss_pred hhhhHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH--------------------------------HHH
Q 025142 120 TRKSMA-TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ--------------------------------NEI 166 (257)
Q Consensus 120 Tkr~ms-~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~--------------------------------~ei 166 (257)
.++++. |+...++.+|.+.|...+...-..-.||++-+.+-.+. .+.
T Consensus 133 ~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~ 212 (305)
T KOG0809|consen 133 SERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEV 212 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHH
Confidence 456666 88889999999999999988777777776655432111 122
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHh----HHHHHHHHHh
Q 025142 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN----IGMYLLCNFV 223 (257)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn----~GV~~Lc~f~ 223 (257)
+..=.+||+.+...+.....=++.+..+|-.=+.=+|+|.+|-+-|+ .|..-|..+-
T Consensus 213 ~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe 273 (305)
T KOG0809|consen 213 VREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE 273 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH
Confidence 22233568888888888888888888888888889999988766554 5666676654
No 342
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=43.85 E-value=93 Score=22.39 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=5.5
Q ss_pred HHHHHhhHHhHHHH
Q 025142 150 TQRIQNLNDKVEKQ 163 (257)
Q Consensus 150 sqRI~~vd~kld~~ 163 (257)
.+.|+.+..++++.
T Consensus 23 ~~ei~~l~~~i~~l 36 (80)
T PF04977_consen 23 NQEIAELQKEIEEL 36 (80)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 343
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.81 E-value=1.6e+02 Score=29.16 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHhhh
Q 025142 32 PELLRELQSLVERLSK 47 (257)
Q Consensus 32 sd~~g~lq~~lk~~~k 47 (257)
+|+++.+|.++..+.+
T Consensus 122 sdLv~Liq~l~a~f~~ 137 (365)
T KOG2391|consen 122 SDLVGLIQELIAAFSE 137 (365)
T ss_pred chHHHHHHHHHHHhcC
Confidence 6788888888866643
No 344
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=43.70 E-value=2.2e+02 Score=30.30 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
++-+..+--..++++.+|..+-.++.+|+=++...++.+..=....++++..++++++....|-.
T Consensus 37 s~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~ 101 (766)
T PF10191_consen 37 SSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTA 101 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH
Confidence 33333344456777788888888888888888888888877777777777777777776655543
No 345
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=43.66 E-value=1e+02 Score=28.03 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=45.3
Q ss_pred hhhhheeeeEeecCCcchhHHHhh------hhHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHhhHHhH
Q 025142 98 LGALGYGYMWWKGLSFADLMYVTR------KSMATAVSNLNKHLESVTEALTV-----------AKKHLTQRIQNLNDKV 160 (257)
Q Consensus 98 vGavGYgYmwWKGws~sDlMfVTk------r~ms~Av~sv~kqLeqVsesL~~-----------tKkhLsqRI~~vd~kl 160 (257)
+|.-|-+| -=+|-.||. |+ -.|..-.+.+-+.|+.+...... .|++|.|=++=-..+|
T Consensus 74 lG~~~~s~-~~~gTdfS~----~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql 148 (195)
T PF12761_consen 74 LGRGGKSY-KEKGTDFSA----TEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQL 148 (195)
T ss_pred hccccCCC-CCCCCCCCC----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34444432 346777776 32 12333334444444444443333 3555554444333333
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 161 EKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 161 d~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
.+..+-......++..+++||+.|..-|+-+..-...
T Consensus 149 ~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~ 185 (195)
T PF12761_consen 149 RELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSS 185 (195)
T ss_pred HhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332212223345667777777777766666655443
No 346
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.52 E-value=86 Score=26.55 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhh
Q 025142 186 HNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie 206 (257)
..+.++..-+..|+.||..+.
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444333
No 347
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=43.48 E-value=4.3e+02 Score=28.08 Aligned_cols=29 Identities=10% Similarity=-0.019 Sum_probs=17.2
Q ss_pred hhhhhhhhhhhhhhHhHHHHHHHHHhhccc
Q 025142 198 LDGKIDSLADKQDITNIGMYLLCNFVDGKK 227 (257)
Q Consensus 198 Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~ 227 (257)
++..+-..+ +++-.+..++.=.++..|+.
T Consensus 288 ~~~~l~~~~-~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 288 LEENLVEKK-KEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhcCc
Confidence 333344444 55566777777777777765
No 348
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.30 E-value=72 Score=34.97 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=27.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q 025142 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN 173 (257)
Q Consensus 131 v~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e 173 (257)
=-|||++=-++|..-++.|++||+.+.+++-.+++..+.+...
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q 480 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQ 480 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhH
Confidence 3466666677777777777777777777766665444444433
No 349
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=43.19 E-value=3e+02 Score=26.16 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=28.5
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhH
Q 025142 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (257)
++.+..++++..+--+.+++++.++...+.....+.+....--..|+.++...+.+-++++.
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~ 284 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK 284 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Confidence 33333344444444444444444444444444444444444444455555555544444443
No 350
>PRK10807 paraquat-inducible protein B; Provisional
Probab=43.13 E-value=92 Score=31.88 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 025142 123 SMATAVSNLNKH-LESVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 123 ~ms~Av~sv~kq-LeqVsesL~~tKkhLsqRI~~vd~kld 161 (257)
++++.++.+.+= ||++-+.+.++-+++.+-+++++..++
T Consensus 421 ~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~ 460 (547)
T PRK10807 421 KLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLD 460 (547)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333332 344455555555555555555555554
No 351
>PRK06696 uridine kinase; Validated
Probab=43.01 E-value=24 Score=30.80 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=22.7
Q ss_pred HHHHHHHHHHh-hhhcCCCeEE-EeCCCCCcceeeh
Q 025142 59 KDQLNRLKFEC-QRASSGQIFV-RNENSGGNATSLM 92 (257)
Q Consensus 59 ~aQV~~L~~El-~La~sr~iTV-vn~~sGg~~s~~i 92 (257)
.+++..|++++ ...+.+|..| +.|.||+++|.+.
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 35678888888 6555555555 6787886675543
No 352
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.80 E-value=1.9e+02 Score=29.65 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=32.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025142 129 SNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 129 ~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
++-.+-++....++.....+++-|++++...+.+..|+.+..+++-..-++.++.
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE 421 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444555556666666666666666666666666666666666554444444443
No 353
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=42.69 E-value=1.1e+02 Score=27.58 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
.+++++++++.+++.+...++.+.+.|.-
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 46788999999999999999999998863
No 354
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.63 E-value=2.5e+02 Score=26.78 Aligned_cols=7 Identities=14% Similarity=0.026 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 025142 216 MYLLCNF 222 (257)
Q Consensus 216 V~~Lc~f 222 (257)
+..||.+
T Consensus 270 l~~l~~~ 276 (359)
T COG1463 270 LANLRPL 276 (359)
T ss_pred HHHHHHH
Confidence 3334433
No 355
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.59 E-value=1.5e+02 Score=29.18 Aligned_cols=11 Identities=45% Similarity=0.779 Sum_probs=5.2
Q ss_pred CCCeEEEeCCCC
Q 025142 74 SGQIFVRNENSG 85 (257)
Q Consensus 74 sr~iTVvn~~sG 85 (257)
...+.+ +++.|
T Consensus 285 ~~~i~v-~~~~g 295 (451)
T PF03961_consen 285 GGSIIV-NGGKG 295 (451)
T ss_pred CCeEEE-eCCCC
Confidence 345555 44433
No 356
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.56 E-value=5e+02 Score=29.64 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
...++.++.+++..+......+.........++.++.+.+.+-
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666665555443
No 357
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=42.50 E-value=2.1e+02 Score=26.12 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHhhHHh-------HHHHHHHHHHHHHH--H----HHhhhhHHHhhhhH
Q 025142 123 SMATAVSNLNKHLESVTEALTVA-KKHLTQRIQNLNDK-------VEKQNEISKDIRKN--V----EEACDDLFKVEHNL 188 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~t-KkhLsqRI~~vd~k-------ld~~~eis~~i~~e--V----~~v~~d~~~i~~dv 188 (257)
+..+.+..+.++++++.+.+-.. +++...||-++.+. +..+.++...+... . .+.+..+..+.+++
T Consensus 146 ~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~~ 225 (318)
T TIGR00383 146 SYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHI 225 (318)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHH
Confidence 44556667777777777766432 23333344444433 33333444333221 1 22233344455567
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 025142 189 KDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie 206 (257)
+.+.+.+..+..+++++.
T Consensus 226 ~~l~~~~~~~~e~l~~l~ 243 (318)
T TIGR00383 226 LSLLEMIETYRELLSSLM 243 (318)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777776655
No 358
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=42.49 E-value=2.2e+02 Score=24.48 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=7.5
Q ss_pred HHHhhhhhhhhhhhhhhhH
Q 025142 194 MIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 194 ~V~~Le~Ki~~ie~kQd~t 212 (257)
....+|.||..++.+-+..
T Consensus 121 e~~~~~~ki~e~~~ki~~e 139 (177)
T PF07798_consen 121 EQAKQELKIQELNNKIDTE 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333
No 359
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.46 E-value=2.3e+02 Score=24.71 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhHHhHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKK---HLTQRIQNLNDKVEK 162 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKk---hLsqRI~~vd~kld~ 162 (257)
+.+-+..+.+++++....+...|. .|..||+.+..+.+.
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333 334444444444443
No 360
>PRK04863 mukB cell division protein MukB; Provisional
Probab=42.29 E-value=5.1e+02 Score=30.17 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHh-hhhc
Q 025142 55 TDAIKDQLNRLKFEC-QRAS 73 (257)
Q Consensus 55 ~d~L~aQV~~L~~El-~La~ 73 (257)
.+.+...++..++=+ .+..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~ 251 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRV 251 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 456777777777666 4444
No 361
>PRK09110 flagellar motor protein MotA; Validated
Probab=42.27 E-value=1.4e+02 Score=28.27 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=62.6
Q ss_pred HhhhhheeeeEeec-----CCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHH
Q 025142 97 TLGALGYGYMWWKG-----LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQR---IQNLNDKVEKQNEISK 168 (257)
Q Consensus 97 ~vGavGYgYmwWKG-----ws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqR---I~~vd~kld~~~eis~ 168 (257)
++|.+.+||++=.| |.+|-+|-|-=-.+ ++.-++--+..+-.++...++-+..+ -+...+-++...+++.
T Consensus 10 ~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtl--ga~lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l~~l~~ 87 (283)
T PRK09110 10 VLGSVFGGYLLAGGHLGALIQPAELLIIGGAAL--GAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALLYELLR 87 (283)
T ss_pred HHHHHHHHHHHcCCChhHhhchhHHHHHHHhHH--HHHHHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Confidence 56777777777555 77778888776544 34456777888888888888888643 5566677888888888
Q ss_pred HHHHH-HHHhhhhHHHhhh
Q 025142 169 DIRKN-VEEACDDLFKVEH 186 (257)
Q Consensus 169 ~i~~e-V~~v~~d~~~i~~ 186 (257)
..|++ +-.+.++++++.+
T Consensus 88 ~aRk~GllaLE~~v~~~~~ 106 (283)
T PRK09110 88 KARQEGMMALEAHIENPEE 106 (283)
T ss_pred HHHhcCHHHHHhhhcCccc
Confidence 88866 6666666666653
No 362
>PRK10869 recombination and repair protein; Provisional
Probab=41.88 E-value=1.4e+02 Score=30.47 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=58.2
Q ss_pred CcchhHHHhhhhHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025142 112 SFADLMYVTRKSMATA------VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 112 s~sDlMfVTkr~ms~A------v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+..|.+.-..+.|+.. ...+...|++++..|..+.+.|....+.++-.=++..+ +++.+..++.=--+.|
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~----ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAE----LEQRLSKQISLARKHH 316 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH----HHHHHHHHHHHHHHhC
Confidence 4556666666777544 35577778888888888888888877766543222222 2333333332222334
Q ss_pred hhHHHHHHHHHhhhh----------hhhhhhhhhhhHhHHHHHHHHHh
Q 025142 186 HNLKDLQSMIYCLDG----------KIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~----------Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
.+++.|-..-..++. ++..++...+-.-.-...+|+-.
T Consensus 317 ~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~L 364 (553)
T PRK10869 317 VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKL 364 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333 45555555555555555555433
No 363
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=41.79 E-value=83 Score=31.89 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK 172 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~ 172 (257)
.+||+..+-+|+|+.-.. ++..||++-...++...-|-+..++
T Consensus 117 i~~~~~el~~q~e~~ea~------e~e~~~erh~~h~~~le~i~~~l~n 159 (548)
T COG5665 117 IHDCLDELQKQLEQYEAQ------ENEEQTERHEFHIANLENILKKLQN 159 (548)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999986543 8889999999998888777777664
No 364
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=41.67 E-value=1.7e+02 Score=28.43 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 184 VEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
+..-++.++.-+..+..+|+++|++
T Consensus 293 vk~vv~el~k~~~~f~~qleELeeh 317 (336)
T PF05055_consen 293 VKEVVKELKKNVESFTEQLEELEEH 317 (336)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444555555555555555544
No 365
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=41.58 E-value=1.6e+02 Score=28.45 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=65.1
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhcccCC
Q 025142 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGR 229 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~ 229 (257)
..||..|..+|-=|+--++..+..-.++-+-+.++..||+-.+.+|--|-.|+.+-+..=..--.|.--+-+.++.++..
T Consensus 235 ~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~ 314 (330)
T KOG2991|consen 235 EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDE 314 (330)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 46899999999988888888888888888888999999999999998888888766655455556666677777665554
Q ss_pred ccc
Q 025142 230 TTE 232 (257)
Q Consensus 230 ~~~ 232 (257)
...
T Consensus 315 ~~a 317 (330)
T KOG2991|consen 315 VDA 317 (330)
T ss_pred ccc
Confidence 443
No 366
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.56 E-value=1.8e+02 Score=31.42 Aligned_cols=84 Identities=12% Similarity=0.267 Sum_probs=50.3
Q ss_pred eecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH---------HHHHHHHHHhh
Q 025142 108 WKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS---------KDIRKNVEEAC 178 (257)
Q Consensus 108 WKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis---------~~i~~eV~~v~ 178 (257)
.-.-.||+=||-| -+-+-+.++.|++.++..|+..+++|-+.. +++..+-.+..+ ...+.+|.+++
T Consensus 53 fln~~fSv~~~tS---as~~s~~ia~q~~~L~q~lr~ldrqLh~qv--~~Rh~allaQat~~~~~d~~l~sl~~~v~~lq 127 (797)
T KOG2211|consen 53 FLNTLFSVQMMTS---ASKESNRIATQCDDLTQKLRELDRQLHAQV--LKRHMALLAQATEELFEDLELRSLLVKVAELQ 127 (797)
T ss_pred cccchhhhhhHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3344577777533 233456788888888888888888886543 222222222222 23445677777
Q ss_pred hhHHHhhhhHHHHHHHHH
Q 025142 179 DDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~ 196 (257)
+.+.+|..|++.....++
T Consensus 128 s~i~riknd~~epyk~i~ 145 (797)
T KOG2211|consen 128 SEIKRIKNDNKEPYKIIW 145 (797)
T ss_pred HHHHHHHHhhhhHHHHHH
Confidence 777777777766554443
No 367
>PRK04098 sec-independent translocase; Provisional
Probab=41.41 E-value=2.5e+02 Score=24.76 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhhHH--hHHHHHHHHHHHHH
Q 025142 120 TRKSMATAVSNLNKH--LESVTEALTVAKKHLTQRIQNLND--KVEKQNEISKDIRK 172 (257)
Q Consensus 120 Tkr~ms~Av~sv~kq--LeqVsesL~~tKkhLsqRI~~vd~--kld~~~eis~~i~~ 172 (257)
-||.++++-+.+... ++.+-+.+...|+.|.+-.+.|.. .+|+..++.....+
T Consensus 39 ~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~~~~~~ 95 (158)
T PRK04098 39 VKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITAEN 95 (158)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhh
Confidence 455555555555443 344555666777777777777776 56666666544444
No 368
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.13 E-value=1.4e+02 Score=31.18 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=58.6
Q ss_pred CcchhHHHhhhhHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh---HHHHHHHHHHHHHHHHHhhhhHH
Q 025142 112 SFADLMYVTRKSMATAV------SNLNKHLESVTEALTVAKKHLTQRIQNLNDK---VEKQNEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 112 s~sDlMfVTkr~ms~Av------~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k---ld~~~eis~~i~~eV~~v~~d~~ 182 (257)
+..|.+|-..+.|++.+ ..+.+.|+..+..|..+..+|..-++.++-- |++..+=...++.=-..-+.+++
T Consensus 242 ~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~ 321 (557)
T COG0497 242 SALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIE 321 (557)
T ss_pred hHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 45667777777776444 3566667777777777777777777666653 44443322222222222222233
Q ss_pred HhhhhHHHHHHHHHh---hhhhhhhhhhhhhhHhHHHHHHHHHhh
Q 025142 183 KVEHNLKDLQSMIYC---LDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~---Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
.+-.-.+.++.-... -|.++..++..-+..-.-....|+-.+
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls 366 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALS 366 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333 344555566555555556666666554
No 369
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=41.03 E-value=3.5e+02 Score=30.24 Aligned_cols=74 Identities=15% Similarity=0.287 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
-|.+-|...-.++..+.++++.+...+ .-+|+++..++.+. .+++++-+.|+..+++|+.+=...+..++
T Consensus 110 iLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l-------e~eLsAk~~eIf~~~~~L~nk~~~lt~~~ 182 (1265)
T KOG0976|consen 110 ILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL-------EDELSAKAHDIFMIGEDLHDKNEELNEFN 182 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHhhhhHHHHHHHHHHhhhhhHHhHHH
Confidence 456666666666666666665544333 33455555554433 34455555555666666555555554444
Q ss_pred hhhh
Q 025142 200 GKID 203 (257)
Q Consensus 200 ~Ki~ 203 (257)
..+.
T Consensus 183 ~q~~ 186 (1265)
T KOG0976|consen 183 MEFQ 186 (1265)
T ss_pred HHHH
Confidence 4443
No 370
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=41.00 E-value=2.9e+02 Score=25.39 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHh-hhhcC
Q 025142 54 FTDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El-~La~s 74 (257)
+-++++.+++.|.+++ .++..
T Consensus 106 ~r~aia~e~~~l~~~i~~~~Nt 127 (287)
T PRK08073 106 ELKAIGAEIDQILKQVVYLANT 127 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3578999999999999 87774
No 371
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=40.99 E-value=1.7e+02 Score=28.25 Aligned_cols=112 Identities=13% Similarity=0.290 Sum_probs=62.3
Q ss_pred HHHhhhhHHH----HHHHHHHhhHHHHH----HHHHHHHHHHHHHHhhHHh--------------HHHHHHHHHHHHHHH
Q 025142 117 MYVTRKSMAT----AVSNLNKHLESVTE----ALTVAKKHLTQRIQNLNDK--------------VEKQNEISKDIRKNV 174 (257)
Q Consensus 117 MfVTkr~ms~----Av~sv~kqLeqVse----sL~~tKkhLsqRI~~vd~k--------------ld~~~eis~~i~~eV 174 (257)
=||-|.+.+= |+..+++=|+++-+ .|...|+.|..||+-+.-- |+-..++++..+.|+
T Consensus 14 tfAIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI 93 (302)
T PF05508_consen 14 TFAIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTKDLRREI 93 (302)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 3567776654 45666666666544 5888888888888877654 444455555555555
Q ss_pred HHhhhhHHHhhh----------hHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhccc--CCcccc
Q 025142 175 EEACDDLFKVEH----------NLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKK--GRTTES 233 (257)
Q Consensus 175 ~~v~~d~~~i~~----------dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~--~~~~~~ 233 (257)
......+..+-. .-..+..+++.++.=|.+||.---+-| |+=-+.|.+ +.+|..
T Consensus 94 ~~f~~~l~~~~~~~e~~~~~~~~~~~i~~V~~~ik~LL~rId~aiPlin-----LaltTSG~~lst~lp~~ 159 (302)
T PF05508_consen 94 DSFDERLEEAAEKEELSKSSENQKESIKKVERYIKDLLARIDDAIPLIN-----LALTTSGVNLSTSLPPT 159 (302)
T ss_pred HHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHhhcchHH-----HHHHhccccccCCCCCC
Confidence 555544444333 222344455555555555554433322 333344554 555554
No 372
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.87 E-value=54 Score=33.47 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=7.5
Q ss_pred hhhHHHhhhhHHHHHHHH
Q 025142 178 CDDLFKVEHNLKDLQSMI 195 (257)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V 195 (257)
+..+++...+++.|+.-+
T Consensus 103 e~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 373
>PF14182 YgaB: YgaB-like protein
Probab=40.86 E-value=1.8e+02 Score=23.02 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=34.7
Q ss_pred HHHHhhHHhHHHHHHHHHHHH-----HHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 151 QRIQNLNDKVEKQNEISKDIR-----KNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~-----~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
-++=.|-..||-|++|-++.+ .+...+++.+++...+++.||.+...
T Consensus 14 D~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 14 DKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888888887765 34777888888888888888877653
No 374
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=40.85 E-value=1.6e+02 Score=27.88 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=23.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~ 162 (257)
+....|.|||=-+.|.+..++|.+-++.+..|++.
T Consensus 125 vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 125 VKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667777777777777777777766666554
No 375
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=40.68 E-value=69 Score=26.45 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
|+.|-.++..+..++.++.+-...++++|.++-+.=....-+-+.++..+..++
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777777777777777777777777776666666666677776666553
No 376
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=40.57 E-value=1e+02 Score=30.28 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=17.9
Q ss_pred HHhhHHHHHHHHH--HHHHHHHHHHhhHHhHHHHHHHHH
Q 025142 132 NKHLESVTEALTV--AKKHLTQRIQNLNDKVEKQNEISK 168 (257)
Q Consensus 132 ~kqLeqVsesL~~--tKkhLsqRI~~vd~kld~~~eis~ 168 (257)
+.||.++++++.. +...|.|-++.++.-++....++.
T Consensus 306 s~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~ 344 (370)
T PLN03094 306 SEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISS 344 (370)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555 444555555555544444433333
No 377
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=40.54 E-value=3.5e+02 Score=29.33 Aligned_cols=83 Identities=17% Similarity=0.320 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhhHHhHHHH-------HHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKH---LTQRIQNLNDKVEKQ-------NEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkh---LsqRI~~vd~kld~~-------~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
+.+.-..+-.|++-+-++|.+...| |..=++.|--+||+- .+-...++++.+-....++.+++-.+.-..
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555677777777777765443 444455555554444 444444445544444444444444444444
Q ss_pred HHHhhhhhhhhhh
Q 025142 194 MIYCLDGKIDSLA 206 (257)
Q Consensus 194 ~V~~Le~Ki~~ie 206 (257)
-|+-|-+||+.++
T Consensus 393 ki~~Lq~kie~Le 405 (775)
T PF10174_consen 393 KINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554444
No 378
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.26 E-value=2.1e+02 Score=29.93 Aligned_cols=91 Identities=15% Similarity=0.258 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH---HHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS---MIY 196 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~---~V~ 196 (257)
.+.+.+++---+|+.++..|+..-..|. +|++.+..+|.....+.+--.-.+.++-.-..++..++..+.. ...
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~ 345 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLE 345 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3444444444555555555666655555 4888888888877777665554455554444444444444433 345
Q ss_pred hhhhhhhhhhhhhhhHh
Q 025142 197 CLDGKIDSLADKQDITN 213 (257)
Q Consensus 197 ~Le~Ki~~ie~kQd~tn 213 (257)
.||.++..+..+=..+.
T Consensus 346 ~Le~~~~~l~~~~~~~A 362 (557)
T COG0497 346 ALEKEVKKLKAELLEAA 362 (557)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666654433333
No 379
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.25 E-value=2.7e+02 Score=24.89 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 025142 117 MYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 117 MfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~v 156 (257)
..=.|+.+.+.+..+.+.+...+..+..+|+.--++=..+
T Consensus 97 ~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 97 QKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999998877664433
No 380
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.24 E-value=2.5e+02 Score=28.29 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=29.8
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld 161 (257)
+.|..+-.+-..++.++.++++.|...++.+...|+.--+++.
T Consensus 139 ~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN 181 (507)
T PRK07739 139 GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEIN 181 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777788888888888887777777666654444433
No 381
>PRK15396 murein lipoprotein; Provisional
Probab=40.22 E-value=1.1e+02 Score=23.95 Aligned_cols=8 Identities=13% Similarity=-0.159 Sum_probs=3.2
Q ss_pred hHhHHHHH
Q 025142 211 ITNIGMYL 218 (257)
Q Consensus 211 ~tn~GV~~ 218 (257)
++|.-+..
T Consensus 64 raN~RlDn 71 (78)
T PRK15396 64 RANQRLDN 71 (78)
T ss_pred HHHHHHHH
Confidence 34444433
No 382
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=40.18 E-value=1.3e+02 Score=21.05 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=10.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhh
Q 025142 132 NKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 132 ~kqLeqVsesL~~tKkhLsqRI~~v 156 (257)
.+.+......|...-+.|...++.+
T Consensus 13 a~~~~~~~~~l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 13 AQQLQAQADELQSQLQQLESSIDSL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444
No 383
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=40.04 E-value=1.9e+02 Score=30.05 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 140 esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
..|+++....-+.|-..+.+.++..+-......|+.++..-++.+...+..+++-+..+|
T Consensus 12 ~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE 71 (701)
T PF09763_consen 12 KELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIE 71 (701)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444444444444433333333
No 384
>PLN02320 seryl-tRNA synthetase
Probab=39.93 E-value=1.3e+02 Score=30.92 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 025142 140 EALTVAKKHLTQRIQ 154 (257)
Q Consensus 140 esL~~tKkhLsqRI~ 154 (257)
+.|++-+.++++.|.
T Consensus 110 ~~lr~ern~~sk~i~ 124 (502)
T PLN02320 110 ERLRAERNAVANKMK 124 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 385
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.72 E-value=1.7e+02 Score=28.53 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025142 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVsesL~~tKkhLsq 151 (257)
+++.+++..-+.++++++.+.|..+.+.|..
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888888777764
No 386
>PRK08913 flgL flagellar hook-associated protein FlgL; Validated
Probab=39.72 E-value=3e+02 Score=25.14 Aligned_cols=21 Identities=0% Similarity=-0.162 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHh-hhhc
Q 025142 53 NFTDAIKDQLNRLKFEC-QRAS 73 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~La~ 73 (257)
.+.++++++++.|.+++ .++.
T Consensus 105 ~~~~~i~~e~~~l~~~l~~~~N 126 (301)
T PRK08913 105 TDATSAAASAQQALTQLATLLN 126 (301)
T ss_pred ccHHHHHHHHHHHHHHHHHHHc
Confidence 34578999999999999 8776
No 387
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=39.66 E-value=2.3e+02 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=12.9
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhh
Q 025142 178 CDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 178 ~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
+.+.++..+|++..+..+..++.+
T Consensus 89 q~~~~~l~~ei~~~~~~~sd~~k~ 112 (115)
T COG4980 89 QPEIERLKSEIEDLQEAISDETKT 112 (115)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Confidence 333455566666666555555443
No 388
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.58 E-value=2.5e+02 Score=31.74 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=40.2
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH---HHHHHHHHHhhhhHHHhhhhHH
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEIS---KDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis---~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
+-++++ ||+ -+++|..++..+-..|+-.+..+++-=..++....|..-+. ..++-+++++..++.+....++
T Consensus 668 l~ei~~--~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~ 742 (1141)
T KOG0018|consen 668 LKEIQK--RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMK 742 (1141)
T ss_pred HHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Confidence 345555 444 56666666666666666666665543233333322222222 2222334444444444444444
Q ss_pred HHHHHHHhhhhhh
Q 025142 190 DLQSMIYCLDGKI 202 (257)
Q Consensus 190 ~v~~~V~~Le~Ki 202 (257)
+++.-++.+|.+|
T Consensus 743 ~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 743 ELEERMNKVEDRI 755 (1141)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 389
>PHA03386 P10 fibrous body protein; Provisional
Probab=39.41 E-value=1e+02 Score=25.09 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=18.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
+|++.+...++-+...+...+.. .+.+|.+-.+|++.
T Consensus 12 ~dIkavd~KVdaLQ~qV~dv~~n-~~~LDa~~~qL~~l 48 (94)
T PHA03386 12 DAVQEVDTKVDALQTQLNGLEED-SQPLDGLPAQLTEL 48 (94)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc-chhhhhHHHHHHHH
Confidence 45555555555555555555444 33344444444433
No 390
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.38 E-value=2.5e+02 Score=29.27 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=29.7
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 025142 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k 159 (257)
+.|..+-..-.+++.++.++++.|...++.+..+|+.--++
T Consensus 139 a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~ 179 (627)
T PRK06665 139 AERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEE 179 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777778888888888888888887777777544333
No 391
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=39.28 E-value=23 Score=23.80 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=21.2
Q ss_pred eeeEeecCCcchhHHHhhhhHHHH
Q 025142 104 GYMWWKGLSFADLMYVTRKSMATA 127 (257)
Q Consensus 104 gYmwWKGws~sDlMfVTkr~ms~A 127 (257)
-++.|+|++-+|--+++..+|.++
T Consensus 22 y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 22 YLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred EEEEECCCCCccCccccHHHhCch
Confidence 358999999999999999998876
No 392
>PRK11020 hypothetical protein; Provisional
Probab=39.20 E-value=1.2e+02 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=13.5
Q ss_pred HHHHHHhhhhhhhhhhhhhhh
Q 025142 191 LQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 191 v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
+..-+..|+.+|.++-.+|.+
T Consensus 36 f~~E~~~l~k~I~~lk~~~~~ 56 (118)
T PRK11020 36 FEKEKATLEAEIARLKEVQSQ 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445557888888777765
No 393
>PLN03223 Polycystin cation channel protein; Provisional
Probab=39.14 E-value=1.6e+02 Score=34.23 Aligned_cols=92 Identities=17% Similarity=0.307 Sum_probs=60.0
Q ss_pred hhhhHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 120 TRKSMA--TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 120 Tkr~ms--~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
.||.|. ||-+.++.-|+||. .|+.+..-|...|+.+..++|-.+...+.=-.+=+ + + .-|..-...++.-=..
T Consensus 767 ~~r~l~~~~~~~~l~~~~~~v~-~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~-~-~--~~i~~g~~d~~~~~~~ 841 (1634)
T PLN03223 767 NRRRLQQTNAAATLTNILTQVG-TLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNS-L-E--TLINAGFTDIKAGQAA 841 (1634)
T ss_pred hhhhhhhcchHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccch-H-H--HHHHhchhHHHhHHHH
Confidence 466665 66667777777775 47778888999999998888877666554332210 0 0 1133333344444556
Q ss_pred hhhhhhhhhhhhhhHhHHH
Q 025142 198 LDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 198 Le~Ki~~ie~kQd~tn~GV 216 (257)
||.||++|-+||+-+....
T Consensus 842 ~~~~~~~il~kq~~al~~~ 860 (1634)
T PLN03223 842 LEAKLDEILGKQQQALAAA 860 (1634)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 7999999999998876544
No 394
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.03 E-value=1.9e+02 Score=30.40 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=36.5
Q ss_pred HHHHHHhhHHhHHHHH---HHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 149 LTQRIQNLNDKVEKQN---EISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 149 LsqRI~~vd~kld~~~---eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|.+..+.|-.+++.|. +=.+.+.-|-.++.+++..|+.+.+.+.+.|..++.++.
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~ 370 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE 370 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444555555555442 222344566778888999999999999999988876543
No 395
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=38.96 E-value=1.3e+02 Score=20.94 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld 161 (257)
|.+....++...++|...++.+...++
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~ 35 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSID 35 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 396
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=38.94 E-value=1.9e+02 Score=22.72 Aligned_cols=48 Identities=8% Similarity=0.151 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHH
Q 025142 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
...+++..+..|-+++-.++++...-...||.-=.++...=+.+...|
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555554444444444444444
No 397
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=38.83 E-value=1.3e+02 Score=27.87 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025142 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
|-.+|.++|+.|...+.+|..++..|.+.|-+++
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQ 38 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQ 38 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999876664
No 398
>PRK09458 pspB phage shock protein B; Provisional
Probab=38.77 E-value=22 Score=27.76 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=27.9
Q ss_pred hHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025142 116 LMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 116 lMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~ 162 (257)
|=|.||+.-+.. ++..=++--+.|...-+++.+||+.|.+=||.
T Consensus 24 LHY~sk~~~~~~---Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 24 LHYRSKRQGSQG---LSQEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HhhcccccCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 457777765442 33333334445556667899999999887773
No 399
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=38.76 E-value=41 Score=29.67 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=26.5
Q ss_pred hhhhheeccccceeeeccCCCchhHHHHHHHHHHHhhh
Q 025142 10 QKILMLAGLGYTGTILVKDGKLPELLRELQSLVERLSK 47 (257)
Q Consensus 10 ~kv~iLvGAG~~GSvl~k~GkLsd~~g~lq~~lk~~~k 47 (257)
||+++.+|||+.-+ -++|+.-+.++.+.+.+..
T Consensus 1 g~lvlFiGAG~S~~-----~glP~W~~Ll~~l~~~~~~ 33 (242)
T cd01406 1 GRVVIFVGAGVSVS-----SGLPDWKTLLDEIASELGL 33 (242)
T ss_pred CCEEEEecCccccc-----cCCCChHHHHHHHHHHcCC
Confidence 68999999999733 4789888888888887754
No 400
>PF05802 EspB: Enterobacterial EspB protein
Probab=38.67 E-value=3.3e+02 Score=26.50 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=55.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 131 v~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.+|+.+-.++ -+-+.++.+=+.+++.+++..++-++|-.--+++.+.++.+.+|+...-+....|-..+..-
T Consensus 137 sSks~~AIae---Lq~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~A 208 (317)
T PF05802_consen 137 SSKSEKAIAE---LQQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAADA 208 (317)
T ss_pred hhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 33467788888999999999999999999999999999999999997766666665555433
No 401
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=38.64 E-value=1.7e+02 Score=27.42 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhc
Q 025142 187 NLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDG 225 (257)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~ 225 (257)
-...+...++..+.++..++....-+..-...+|+|.+-
T Consensus 310 f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge 348 (370)
T PF02181_consen 310 FKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGE 348 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 366778888999999999999999999999999999953
No 402
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=38.27 E-value=2.8e+02 Score=27.46 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=27.0
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 025142 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQN 155 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~ 155 (257)
+.|..+-.+-..+.+++.+++..|...++.+.+.|+.
T Consensus 127 ~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~ 163 (456)
T PRK07191 127 PMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDA 163 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777788888887777777777666543
No 403
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.24 E-value=2.6e+02 Score=24.47 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=41.8
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
++..+|+.|+.+|.....+...+-+.-.++-.|+..++.-+..+=..=.+|+..|..+...-+.+..+...|
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l 89 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVL 89 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888877777777777777777777776666555543333334444444443333333333333
No 404
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=38.24 E-value=2.5e+02 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=14.2
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 174 VEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
|.++...+++++.-++++=..++.|..
T Consensus 89 v~els~~L~~~~~lL~~~v~~ie~LN~ 115 (131)
T PF10158_consen 89 VNELSQQLSRCQSLLNQTVPSIETLNE 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555444444443
No 405
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=38.10 E-value=69 Score=28.87 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhh-hHHHHHHHHHhhhhhhhhhh
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEH-NLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~-dv~~v~~~V~~Le~Ki~~ie 206 (257)
+|...+.|--|+.|+.- +++.++-..||+++..+..|++.-+. -..--.+.|.-||..|++..
T Consensus 38 lDElNs~IG~A~~~~~~---------~~i~~~L~~IQ~~LF~lG~dLat~~~~~~~i~~e~v~~LE~~id~y~ 101 (184)
T COG2096 38 LDELNSFIGLARALLKD---------EDIRAILRRIQNDLFDLGADLATPEEKPLRITEEDVKRLEKRIDAYN 101 (184)
T ss_pred HHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHhhhhhcCCCccccccCHHHHHHHHHHHHHHH
Confidence 67777777777766654 66777888889999888888887651 01122344445555555443
No 406
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=38.08 E-value=2.9e+02 Score=24.56 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH-----------Hhh
Q 025142 121 RKSMATAVSNLNKHLESVTEALTV-----------AKKHLTQRIQNLNDKVEKQNEISKDIRKNVE-----------EAC 178 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVsesL~~-----------tKkhLsqRI~~vd~kld~~~eis~~i~~eV~-----------~v~ 178 (257)
|+.|++.+..++..--.|.+.... ..+.+.+++-.+-.+|.......+.++-|.. ++.
T Consensus 11 Rk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G~FP~~~Y~~l~ 90 (229)
T PF10334_consen 11 RKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKGRFPKETYQRLL 90 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCCHHHHHHHH
Confidence 778888888888877777666665 1234556666777777777777777754432 444
Q ss_pred hhHHHhhhhHHHHHHHHHhhh-hhh-h----hhh-hhhhh--HhHHHHHHHHHhhcccCCcccchh
Q 025142 179 DDLFKVEHNLKDLQSMIYCLD-GKI-D----SLA-DKQDI--TNIGMYLLCNFVDGKKGRTTESMQ 235 (257)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~~Le-~Ki-~----~ie-~kQd~--tn~GV~~Lc~f~~~~~~~~~~~~~ 235 (257)
.-..+|-+=+..+..+...|| ... . .+. ...++ .-.-+-++|...=..+.++|+++.
T Consensus 91 ~~~~~il~~l~~l~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~pLP~~lp 156 (229)
T PF10334_consen 91 ELCQNILDLLSLLSYVSTRLEPSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQPLPPYLP 156 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCccCC
Confidence 444555555555555555553 110 0 000 11111 122455566655566788888864
No 407
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=37.89 E-value=1.8e+02 Score=22.07 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=13.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
|..+......+++..+..+.+....+......++..
T Consensus 24 LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 24 LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433333333333333333
No 408
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.87 E-value=2.5e+02 Score=30.11 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHhhhcCCCC-CchHHHHHHHHHHHHHh-hhhcC-------------CCeEEEeCCCCCcceeehhhh
Q 025142 31 LPELLRELQSLVERLSKSGEQD-NFTDAIKDQLNRLKFEC-QRASS-------------GQIFVRNENSGGNATSLMIPA 95 (257)
Q Consensus 31 Lsd~~g~lq~~lk~~~k~gd~~-~~~d~L~aQV~~L~~El-~La~s-------------r~iTVvn~~sGg~~s~~ivpa 95 (257)
++++...+..++..-..--|.+ |..+.|-.+++++.++| +...+ +.||+-| +-+.+-|++
T Consensus 128 ~~~l~~~i~~~id~~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~-----~r~~i~vk~ 202 (782)
T PRK00409 128 LPELEQEIHNCIDEEGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRN-----DRYVLPVKA 202 (782)
T ss_pred cHHHHHHHHHHhCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEC-----CEEEEEech
Q ss_pred hHhhhhheeeeEeecCCcch-hHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH
Q 025142 96 ATLGALGYGYMWWKGLSFAD-LMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI 170 (257)
Q Consensus 96 A~vGavGYgYmwWKGws~sD-lMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i 170 (257)
---+.+. || |.+.|-|- -.|++-..+..--+.+..--.+..+.....-++|+.+|..--..+....++...+
T Consensus 203 ~~~~~~~-g~--v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~l 275 (782)
T PRK00409 203 EYKHAIK-GI--VHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDEL 275 (782)
T ss_pred hhhccCC-Cc--eeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 409
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=37.77 E-value=3e+02 Score=24.56 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+....+.|.++|-.+.++.....+.-+....++..++.+.+.+..++.+.
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333333333333344444444444444444433
No 410
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=37.74 E-value=1.2e+02 Score=32.08 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
++.+|..++++.+..++.+|.+...-..+.=+ .+..=+.+++..++.|-..++.+=.||
T Consensus 256 sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q~~---------------------aL~~L~~qL~nnF~AISssI~dIy~RL 314 (610)
T PF01601_consen 256 SFNKAIGNIQLGFTTTASALNKIQDVVNQQGQ---------------------ALNQLTSQLSNNFGAISSSIQDIYNRL 314 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45667777777777777776654333222211 111122334445555555555556666
Q ss_pred hhhhhhhhhH---hHHHHHHHHHhhc
Q 025142 203 DSLADKQDIT---NIGMYLLCNFVDG 225 (257)
Q Consensus 203 ~~ie~kQd~t---n~GV~~Lc~f~~~ 225 (257)
+.+|+.+..- |--+-.|=.|+..
T Consensus 315 d~leAdaQVDRLItGRL~aLnafVtq 340 (610)
T PF01601_consen 315 DQLEADAQVDRLITGRLAALNAFVTQ 340 (610)
T ss_dssp HHHHHH--------------------
T ss_pred HHHhhcccccccccchHHHHHHHHHH
Confidence 6666655432 2233344445544
No 411
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=37.71 E-value=1.8e+02 Score=23.05 Aligned_cols=13 Identities=0% Similarity=0.128 Sum_probs=5.1
Q ss_pred HhhhhHHHHHHHH
Q 025142 119 VTRKSMATAVSNL 131 (257)
Q Consensus 119 VTkr~ms~Av~sv 131 (257)
+.+.++.+.++.-
T Consensus 29 a~~~~v~~~~~~f 41 (113)
T PF02520_consen 29 AEKYGVQDQYNEF 41 (113)
T ss_pred HHHCCcHHHHHHH
Confidence 3444433333333
No 412
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=37.70 E-value=1.3e+02 Score=22.03 Aligned_cols=36 Identities=8% Similarity=0.356 Sum_probs=24.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
...+-.+.+.+|+.|-.--.+.+.|||.|.+.+.+.
T Consensus 12 L~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455556777778777888888888888887655
No 413
>PRK10869 recombination and repair protein; Provisional
Probab=37.69 E-value=2.5e+02 Score=28.72 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNE 165 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLs---qRI~~vd~kld~~~e 165 (257)
..+.+.+.++--+|+.+...|+.-...+. .|++.+.++|+....
T Consensus 264 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~ 310 (553)
T PRK10869 264 SGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQIS 310 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 35667777777777777777766554332 344444444444333
No 414
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=37.67 E-value=3.9e+02 Score=28.42 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH-----------HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN-----------VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 140 esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e-----------V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
.-|.+.+..+..++..+++|++.+.-..+.|+++ +..-...++-|=.|++.=++.+..||..++.+...
T Consensus 185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555554444444444 44444456667788888888888888888888766
Q ss_pred hhhHhHHH
Q 025142 209 QDITNIGM 216 (257)
Q Consensus 209 Qd~tn~GV 216 (257)
=.-+|++.
T Consensus 265 l~~~N~~~ 272 (629)
T KOG0963|consen 265 LAKANSSK 272 (629)
T ss_pred HHhhhhhh
Confidence 55555554
No 415
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.66 E-value=2e+02 Score=22.56 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=54.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh-----HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK-----VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k-----ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
.+.....+.+.+-++.|......|.++|+.|-.. -+.-..-..+....++++..-+.+|+..++..-..++.-|.
T Consensus 10 ~~~~~~A~~~~~~~~~i~~~l~~l~s~~~~l~~~W~G~a~~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a~~~~~~d~ 89 (97)
T COG4842 10 EEMRATAKDYAGSSGEIQALLQDLASEIAKLQSAWEGDAAEAFQSEQQQWNQAATELNEALEQLADALRHAADAFEEADQ 89 (97)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777766543 23334445556667777778888888888888888887777
Q ss_pred hhhh
Q 025142 201 KIDS 204 (257)
Q Consensus 201 Ki~~ 204 (257)
++..
T Consensus 90 ~~a~ 93 (97)
T COG4842 90 RVAQ 93 (97)
T ss_pred HHHh
Confidence 7653
No 416
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=37.47 E-value=76 Score=25.04 Aligned_cols=14 Identities=7% Similarity=0.129 Sum_probs=8.4
Q ss_pred EeecCCcchhHHHh
Q 025142 107 WWKGLSFADLMYVT 120 (257)
Q Consensus 107 wWKGws~sDlMfVT 120 (257)
..-|.|++|+.=..
T Consensus 55 r~~G~sl~~i~~l~ 68 (108)
T cd01107 55 RDLGFPLEEIKEIL 68 (108)
T ss_pred HHcCCCHHHHHHHH
Confidence 34577777765443
No 417
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=37.38 E-value=3e+02 Score=24.48 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=48.3
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH--HHhhhhHHH--hhhhHHHHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV--EEACDDLFK--VEHNLKDLQSMI 195 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV--~~v~~d~~~--i~~dv~~v~~~V 195 (257)
-|.......+.+.+++++....+.. |..+|..+..++++.+.--..+.-.+ ...+..+.. -+.|..+-...+
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~----l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~f 168 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAK----LQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARF 168 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5666666777777777665555544 44455555555555543322222111 111111111 145666777777
Q ss_pred HhhhhhhhhhhhhhhhH
Q 025142 196 YCLDGKIDSLADKQDIT 212 (257)
Q Consensus 196 ~~Le~Ki~~ie~kQd~t 212 (257)
+-+|.|+.++|..-+..
T Consensus 169 er~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 169 EQYERRVDELEAQAESY 185 (219)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77888888888665543
No 418
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.36 E-value=3.3e+02 Score=25.03 Aligned_cols=11 Identities=9% Similarity=0.610 Sum_probs=4.0
Q ss_pred hhhhHHHHHHH
Q 025142 184 VEHNLKDLQSM 194 (257)
Q Consensus 184 i~~dv~~v~~~ 194 (257)
|..|+..+...
T Consensus 58 I~~DIn~lE~i 68 (230)
T PF10146_consen 58 INQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 419
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.24 E-value=4.8e+02 Score=29.62 Aligned_cols=98 Identities=12% Similarity=0.195 Sum_probs=50.3
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQR---IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqR---I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
||=-+-.-++.-.++|..+.++|..+++++..+ |+.+-..+.+...=......+...++..+..+..+...++....
T Consensus 665 srLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~ 744 (1200)
T KOG0964|consen 665 SRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLE 744 (1200)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 344444555556778888899999988876443 44444433333322333334444444444445555555555444
Q ss_pred hhhhhhhhhhhhhhhHhHHHH
Q 025142 197 CLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 197 ~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
-...+|..+...-...-.+-.
T Consensus 745 ~k~~~Le~i~~~l~~~~~~~~ 765 (1200)
T KOG0964|consen 745 PKGKELEEIKTSLHKLESQSN 765 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333
No 420
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=37.16 E-value=2.3e+02 Score=23.14 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=28.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH---------HHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025142 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK---------QNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 127 Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~---------~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
+...+.++|+...+.....-+.+.+.++.+-.+++. ..+..+.+++...+++........+++.
T Consensus 33 ~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~ 105 (158)
T PF03938_consen 33 AGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQ 105 (158)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433334444333333332 2334444555555555555555544443
No 421
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.09 E-value=3.3e+02 Score=27.57 Aligned_cols=65 Identities=23% Similarity=0.430 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
.|...+|.+.++++.+-.+ .++++++|......-.++.+.+..+++.+..-+..+|.+++.++..
T Consensus 33 ~ld~~~r~~~~~~e~l~~~---rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~ 97 (429)
T COG0172 33 ELDEERRKLLRELEELQAE---RNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAE 97 (429)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3555666666666666544 4566666652222111144555555555555555555555555443
No 422
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.94 E-value=78 Score=24.39 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=28.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025142 131 LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 131 v~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+.+....+--.|+.+|..+. .+..++...++|.+-.+..++++..-+.=+.+++
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~-~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIR-ELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444443332 2555777777776666666666655555444443
No 423
>PHA01750 hypothetical protein
Probab=36.76 E-value=1.1e+02 Score=23.79 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=6.2
Q ss_pred HHHHHhhHHhHHHHH
Q 025142 150 TQRIQNLNDKVEKQN 164 (257)
Q Consensus 150 sqRI~~vd~kld~~~ 164 (257)
.+.++|+...+++.+
T Consensus 41 ~~ELdNL~~ei~~~k 55 (75)
T PHA01750 41 NSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 424
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=36.75 E-value=1.4e+02 Score=23.41 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=25.1
Q ss_pred HHHHHHHHhhHHhHHHH-HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 147 KHLTQRIQNLNDKVEKQ-NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 147 khLsqRI~~vd~kld~~-~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
+++..|+|.+++|+|-. .|..+.+-+ ++|.|+.-+--.|=+|
T Consensus 18 ne~~kRLdeieekvef~~~Ev~Qr~Gk----------kiGRDIGILYGlVIGl 60 (75)
T COG4064 18 NEIHKRLDEIEEKVEFVNGEVYQRIGK----------KIGRDIGILYGLVIGL 60 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH----------HhcchHHHHHHHHHHH
Confidence 45666777777776643 234444443 4588888776666554
No 425
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.74 E-value=4.9e+02 Score=30.35 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=5.8
Q ss_pred HHHhhhhHHHH
Q 025142 117 MYVTRKSMATA 127 (257)
Q Consensus 117 MfVTkr~ms~A 127 (257)
.+=||-+++.|
T Consensus 1534 L~~T~~di~ra 1544 (1758)
T KOG0994|consen 1534 LSRTKGDIARA 1544 (1758)
T ss_pred HHhhhhhHHHH
Confidence 45555555544
No 426
>PLN02678 seryl-tRNA synthetase
Probab=36.73 E-value=3.9e+02 Score=26.91 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHH
Q 025142 186 HNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNF 222 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f 222 (257)
.+.+.+..-+..|-.+|..+|...+....-+..++.-
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556666666666666666666555555443
No 427
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.66 E-value=3.7e+02 Score=25.30 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=50.7
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----hhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh-------hh
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQ-----NLNDKVEKQNEISKDIRKNVEEACDDLFKVE-------HN 187 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~-----~vd~kld~~~eis~~i~~eV~~v~~d~~~i~-------~d 187 (257)
.++.-.+|+.-+.+|++.....|.++.+.|..==+ ..+..-....+....++.+..+++..+.... -+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 45556788999999999999999998877654211 1222222334445555566666665555442 23
Q ss_pred HHHHHHHHHhhhhhhhh
Q 025142 188 LKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~ 204 (257)
+..++.-+..|+.+|..
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55555555555555543
No 428
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=36.63 E-value=3.1e+02 Score=24.47 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=17.9
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.++..-.........++..++.-+..|..||.+
T Consensus 157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555666666666666666554
No 429
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=36.52 E-value=4.2e+02 Score=28.77 Aligned_cols=89 Identities=21% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH
Q 025142 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM 194 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (257)
+.|-..|++|....+.-..+++....-| ++..++|..|..+|+..++-......++...+.....+..-...+..-
T Consensus 599 E~le~eK~~Le~~L~~~~d~lE~~~~qL----~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E 674 (769)
T PF05911_consen 599 EKLESEKEELEMELASCQDQLESLKNQL----KESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE 674 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHhhhhhhhhhhh
Q 025142 195 IYCLDGKIDSLAD 207 (257)
Q Consensus 195 V~~Le~Ki~~ie~ 207 (257)
+..|-.|+..+|.
T Consensus 675 ~~~l~~Ki~~Le~ 687 (769)
T PF05911_consen 675 AEELQSKISSLEE 687 (769)
T ss_pred HHHHHHHHHHHHH
No 430
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=36.52 E-value=2.3e+02 Score=26.77 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 140 esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
++|.+-...|.+.+..++.++. +++....+-..+..+.+..+..++.++..-+..|..+|.++.
T Consensus 10 ~~L~~Ep~~L~~~~~~l~~ql~---~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~ 73 (338)
T PF04124_consen 10 ESLFSEPQSLSEEIASLDAQLQ---SLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELD 73 (338)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666555543 334444444444455555555555555555555555554443
No 431
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.46 E-value=4.3e+02 Score=26.93 Aligned_cols=84 Identities=13% Similarity=0.217 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHH----------------------HHHHHHHHHHhhHHhHHHHHHHHHHHHHHH------
Q 025142 123 SMATAVSNLNKHLESVTEALTV----------------------AKKHLTQRIQNLNDKVEKQNEISKDIRKNV------ 174 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~----------------------tKkhLsqRI~~vd~kld~~~eis~~i~~eV------ 174 (257)
++-+|.+.+.+|+|.+.+.+.. +|+-++.+|++...+++....+--+|.+-.
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl 316 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVL 316 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 4566677777777777666543 345566778888888888877777665432
Q ss_pred -------HHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 175 -------EEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 175 -------~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
..++.-+.+ +.-.+.|++.+..+..-+++=++
T Consensus 317 ~AyksGs~alK~il~~-~~s~ekVed~Ldev~et~d~~~E 355 (439)
T KOG2911|consen 317 QAYKSGSEALKAILAQ-GGSTEKVEDVLDEVNETLDRQEE 355 (439)
T ss_pred HHHHHhHHHHHHHHhc-cCChhhHHHHHHHHHHHHhhHHH
Confidence 122222222 34445666666666666665443
No 432
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.36 E-value=2.4e+02 Score=27.56 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHL 149 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhL 149 (257)
|.|.-..-++.+++..++-+.+|...|++|
T Consensus 19 thr~Y~qKleel~~lQ~~C~ssI~~QkkrL 48 (330)
T PF07851_consen 19 THRSYKQKLEELSKLQDKCSSSISHQKKRL 48 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666666666654
No 433
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=36.28 E-value=1.3e+02 Score=21.03 Aligned_cols=28 Identities=4% Similarity=0.340 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHH
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDI 170 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i 170 (257)
...+..+..+++.++.++++..++...+
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666655555444433
No 434
>COG1511 Predicted membrane protein [Function unknown]
Probab=36.17 E-value=4.8e+02 Score=27.84 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHH--HHHHHHH-------HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEAL--TVAKKHL-------TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL--~~tKkhL-------sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
|-+.++++.+.+++++-..+... ..+=+.+ ...+..+.+-.++.....+.+.+..+.+..-...+..++..
T Consensus 145 ~~~~~~~l~~~is~~~t~t~~~~v~~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (780)
T COG1511 145 TEKAADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNA 224 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHH
Confidence 34456666667777766655544 1222222 23334444444444444444444444444444444444455
Q ss_pred HHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHh
Q 025142 191 LQSMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 191 v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
+..-+..+...+..+....+..+.|+..|-+..
T Consensus 225 l~~~~~~l~d~l~~i~~~~~~~~~~~~~l~~~~ 257 (780)
T COG1511 225 LTSGLTTLTDGLNQLDSGLGTLAAGIGELKQGA 257 (780)
T ss_pred HhhhhHHHhhhHHHHHhhhhHHhhhhHHHHHHH
Confidence 555455555555555544444444444444433
No 435
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.13 E-value=61 Score=31.51 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhHHHH
Q 025142 125 ATAVSNLNKHLESVT 139 (257)
Q Consensus 125 s~Av~sv~kqLeqVs 139 (257)
.++.+.+.+++++..
T Consensus 241 ~~~~~~l~~~~~~~~ 255 (406)
T PF02388_consen 241 KEYLESLQEKLEKLE 255 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 436
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.99 E-value=5.7e+02 Score=27.36 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=53.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH---HHHhhhhHHHhh-hhHHHHHHHHHhhh-hhhhh
Q 025142 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN---VEEACDDLFKVE-HNLKDLQSMIYCLD-GKIDS 204 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e---V~~v~~d~~~i~-~dv~~v~~~V~~Le-~Ki~~ 204 (257)
++=.+|+.|...|..-++....|....-.=++++..++..+... +...-.|-+.+- ..++.++.-+..|+ .|-+|
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~R 179 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDR 179 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555554444455555555555443 111222222222 45566666666664 45666
Q ss_pred hhhhhhhHhHHHHHHHHHhhcccCCcc
Q 025142 205 LADKQDITNIGMYLLCNFVDGKKGRTT 231 (257)
Q Consensus 205 ie~kQd~tn~GV~~Lc~f~~~~~~~~~ 231 (257)
++.-..+- .-|..||.-.+-.-..++
T Consensus 180 lekv~~~~-~~I~~l~~~Lg~~~~~~v 205 (660)
T KOG4302|consen 180 LEKVLELK-EEIKSLCSVLGLDFSMTV 205 (660)
T ss_pred HHHHHHHH-HHHHHHHHHhCCCcccch
Confidence 66555554 458899998774434333
No 437
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=35.96 E-value=4e+02 Score=25.48 Aligned_cols=127 Identities=16% Similarity=0.237 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHh-hhhcCCCeEEEeCCCCCcceeehhhhhHhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHh
Q 025142 56 DAIKDQLNRLKFEC-QRASSGQIFVRNENSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKH 134 (257)
Q Consensus 56 d~L~aQV~~L~~El-~La~sr~iTVvn~~sGg~~s~~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kq 134 (257)
..++.|+..|+-|+ +.-...| -|+..+.. |+ .++ .|..|.. +..+
T Consensus 55 ~ll~~~~k~L~aE~~qwqk~~p-eii~~n~~------VL--~~l---------------------gkeelqk----l~~e 100 (268)
T PF11802_consen 55 SLLMMRVKCLTAELEQWQKRTP-EIIPLNPE------VL--LTL---------------------GKEELQK----LISE 100 (268)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CcCCCCHH------HH--HHH---------------------HHHHHHH----HHHH
Confidence 46888999999999 7655443 22222221 11 022 4666655 4456
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhH
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (257)
|+.|-..+.+=.++|..-+++-..=|++++++-........+++.....+.. +.+++.|+.||..++..+.-.
T Consensus 101 Le~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-----~rv~~el~~K~~~~k~~~e~L-- 173 (268)
T PF11802_consen 101 LEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-----SRVFQELKTKIEKIKEYKEKL-- 173 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----HHHHHHHHHHHHHHHHHHHHH--
Confidence 7788788888888888888888888999999999888888888765555443 455678888888887554433
Q ss_pred HHHHHHHHhh
Q 025142 215 GMYLLCNFVD 224 (257)
Q Consensus 215 GV~~Lc~f~~ 224 (257)
+..|-+|.+
T Consensus 174 -l~~LgeFLe 182 (268)
T PF11802_consen 174 -LSFLGEFLE 182 (268)
T ss_pred -HHHHHHHHH
Confidence 233445553
No 438
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=35.90 E-value=2.7e+02 Score=23.47 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHh-------HHHHHHHHHHHHHHHHHhhhhH-HHhhhhHHHHHHHHHhhhhhhhh
Q 025142 136 ESVTEALTVAKKHLTQRIQNLNDK-------VEKQNEISKDIRKNVEEACDDL-FKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 136 eqVsesL~~tKkhLsqRI~~vd~k-------ld~~~eis~~i~~eV~~v~~d~-~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.+.+.+|....+.+.+.+..+... ++........++.....++... .....+++.+=-.+..++.|+..
T Consensus 26 ~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~k 102 (136)
T PF04871_consen 26 SQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKK 102 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHH
Confidence 444555555555555554444442 2223333333333333333222 45778888888888889988874
No 439
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=35.80 E-value=3.2e+02 Score=24.31 Aligned_cols=40 Identities=28% Similarity=0.276 Sum_probs=29.3
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
.+.+..++..+......++.++..+..|+.||..+..+++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666677777777777888888888888887776
No 440
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=35.76 E-value=4.1e+02 Score=30.47 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=13.4
Q ss_pred CcchhHHHhhhhHHHHHHHHH
Q 025142 112 SFADLMYVTRKSMATAVSNLN 132 (257)
Q Consensus 112 s~sDlMfVTkr~ms~Av~sv~ 132 (257)
+.||+-+....+.+-||..+-
T Consensus 893 ~~p~f~~~~v~~~s~a~~~l~ 913 (1395)
T KOG3595|consen 893 QNPDFVPEKVNRASLACEGLC 913 (1395)
T ss_pred CCccCCHHHHHhhhhhhhhHH
Confidence 456666666666666776653
No 441
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=35.75 E-value=1.5e+02 Score=27.21 Aligned_cols=27 Identities=11% Similarity=0.368 Sum_probs=12.0
Q ss_pred hhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 177 ACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 177 v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
++++++.|+.++..+...++.+|..|.
T Consensus 20 ~~~~L~~i~~~~~~i~~~l~~~~~~l~ 46 (243)
T PF07160_consen 20 LKDTLSKIDQEVSAIEELLNDIEQELQ 46 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 442
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=35.59 E-value=3e+02 Score=23.91 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=36.0
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~ 164 (257)
--.|+.+.+-+..+.+.|+.+.+++..--.++.++|...++.+|+..
T Consensus 19 ~~~~~el~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~ 65 (236)
T PRK11115 19 ESIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMME 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHH
Confidence 34677778888888888888888887766677777777777777665
No 443
>PLN03184 chloroplast Hsp70; Provisional
Probab=35.52 E-value=3.4e+02 Score=28.41 Aligned_cols=69 Identities=6% Similarity=0.187 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHH-----HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 137 SVTEALTVAKKHLTQRIQNLNDKVEKQ-----NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 137 qVsesL~~tKkhLsqRI~~vd~kld~~-----~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
........+|.+|..-|..+..++++. .+-.+.+++.+++.++=|. ++|.+.+++..+.|+..+..++.
T Consensus 559 ~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~--~~d~~~ik~~~~~l~~~l~~l~~ 632 (673)
T PLN03184 559 KEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIA--SGSTQKMKDAMAALNQEVMQIGQ 632 (673)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556667778888888888888642 1222344444555555554 35777888888888887777775
No 444
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=35.52 E-value=3.4e+02 Score=26.62 Aligned_cols=22 Identities=5% Similarity=-0.171 Sum_probs=9.8
Q ss_pred hHHHHHHHHHhhcccCCcccch
Q 025142 213 NIGMYLLCNFVDGKKGRTTESM 234 (257)
Q Consensus 213 n~GV~~Lc~f~~~~~~~~~~~~ 234 (257)
..++..+++.......++|.++
T Consensus 289 ~~~~~~~~~~l~~~~~~l~~yl 310 (412)
T PF04108_consen 289 YNALSEALEELRKFGERLPSYL 310 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333566654
No 445
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=35.44 E-value=3.6e+02 Score=27.97 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=40.7
Q ss_pred eEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 025142 106 MWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 106 mwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k 159 (257)
-|-+-.+.||.| |+++.++++.-=-.|| +-.|.++|+-|..|.+++..-
T Consensus 157 ~~a~d~~~s~~~--q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~ 205 (554)
T KOG4677|consen 157 SYAPDLGRSKGE--QYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF 205 (554)
T ss_pred hcccccccchhh--hHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH
Confidence 577888899999 8999998887766666 888999999999888887655
No 446
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=35.31 E-value=3.4e+02 Score=27.82 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHH-----HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 138 VTEALTVAKKHLTQRIQNLNDKVEKQ-----NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 138 VsesL~~tKkhLsqRI~~vd~kld~~-----~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.......+|..|..-|..+.++|++. .+-.+.+++.+.+.++-+.. +|.+.+++..+.|+..+..+..++
T Consensus 521 ~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~--~~~~~i~~k~~~L~~~~~~~~~~~ 595 (627)
T PRK00290 521 KRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKG--EDKEAIKAKTEELTQASQKLGEAM 595 (627)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777888888888888642 12223444445555554442 377888888888888888877654
No 447
>PF13166 AAA_13: AAA domain
Probab=35.27 E-value=5e+02 Score=26.49 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=15.8
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
+..+...+......+..+...+..++.++..++..
T Consensus 419 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 419 IKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444454444443
No 448
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=35.18 E-value=2.6e+02 Score=25.19 Aligned_cols=76 Identities=9% Similarity=0.102 Sum_probs=0.0
Q ss_pred hHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH------HHhhhhHHHHHHH
Q 025142 123 SMATAVSNLN--KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL------FKVEHNLKDLQSM 194 (257)
Q Consensus 123 ~ms~Av~sv~--kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~------~~i~~dv~~v~~~ 194 (257)
.+.+|-.+.- ..|.+-+.+|...-+.++ ||.||+=+|+..|......+-=..+...+ +.+..+++.+.+
T Consensus 99 ~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~- 175 (191)
T PTZ00446 99 NLENMHLHKIAVNALSYAANTHKKLNNEIN--TQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKE- 175 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH-
Q ss_pred HHhhhhhh
Q 025142 195 IYCLDGKI 202 (257)
Q Consensus 195 V~~Le~Ki 202 (257)
+.||.++
T Consensus 176 -e~l~~~l 182 (191)
T PTZ00446 176 -QTMEEKL 182 (191)
T ss_pred -HHHHHHH
No 449
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=35.06 E-value=95 Score=33.91 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLT 150 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLs 150 (257)
.|.+-.+.+-...+++.+.++++++||.
T Consensus 183 ~i~~s~~~m~~~~~dl~t~lrdv~~~l~ 210 (865)
T KOG4331|consen 183 RIKNSLEDMRRLATDLRTYLRDVPRDLM 210 (865)
T ss_pred hhhccHHHHHHHHHHHHHHHhccHHHHH
Confidence 4555566666677777777777777776
No 450
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=35.02 E-value=1.6e+02 Score=23.28 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=24.5
Q ss_pred HHHHHHHHhhHHhHHHH-HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025142 147 KHLTQRIQNLNDKVEKQ-NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 147 khLsqRI~~vd~kld~~-~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
+++..|+|.+++|+|-. .|+.+.+-+.+ |.|+.=+-=.|-
T Consensus 18 ~~i~~rLD~iEeKVEftn~Ei~Qr~Gkkv----------GRDiGIlYG~vi 58 (77)
T PRK01026 18 KEIQKRLDEIEEKVEFTNAEIFQRIGKKV----------GRDIGILYGLVI 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHh----------hhHHHHHHHHHH
Confidence 56777888888887754 34554444444 777765544443
No 451
>PRK09303 adaptive-response sensory kinase; Validated
Probab=34.99 E-value=1.1e+02 Score=28.69 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhhHHHh
Q 025142 165 EISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 165 eis~~i~~eV~~v~~d~~~i 184 (257)
.++-++++-++.++.-++.+
T Consensus 157 ~iaHeLrtPLt~i~~~~e~l 176 (380)
T PRK09303 157 MLAHDLRTPLTAASLALETL 176 (380)
T ss_pred HHhHhhcchHHHHHHHHHHH
Confidence 34445555555554444433
No 452
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=34.95 E-value=5.1e+02 Score=27.25 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025142 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 139 sesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
|+.++.+-..+..-+..+.+++++..|--.+++++=.++|++++++..-+..
T Consensus 377 yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~e 428 (570)
T COG4477 377 YSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHE 428 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555555544555555554444433
No 453
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=34.86 E-value=3.1e+02 Score=28.60 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=21.8
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHH
Q 025142 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
+.+++..+...-.+....+.-+...+.+++.+++....++.-+.+|-.
T Consensus 122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 333333333333333333444444455555555555555555555543
No 454
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=34.78 E-value=1.3e+02 Score=22.17 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=10.0
Q ss_pred HHHHHHHhhHHhHH
Q 025142 148 HLTQRIQNLNDKVE 161 (257)
Q Consensus 148 hLsqRI~~vd~kld 161 (257)
++.+||+.+..+||
T Consensus 76 ~l~~~i~~L~~~le 89 (89)
T PF05164_consen 76 RLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC
Confidence 67777777777665
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=34.67 E-value=2.8e+02 Score=29.38 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHhhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~i 205 (257)
..+++.+...+..|..++.++
T Consensus 415 ~~~~~~l~~~i~~l~~~i~~l 435 (895)
T PRK01156 415 NVKLQDISSKVSSLNQRIRAL 435 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433
No 456
>PRK11020 hypothetical protein; Provisional
Probab=34.63 E-value=42 Score=28.33 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=31.4
Q ss_pred CchhHHHHHHHHHHHhhhcCCCC------CchHHHHHHHHHHH-----------HHh-hhhcCCCeEE
Q 025142 30 KLPELLRELQSLVERLSKSGEQD------NFTDAIKDQLNRLK-----------FEC-QRASSGQIFV 79 (257)
Q Consensus 30 kLsd~~g~lq~~lk~~~k~gd~~------~~~d~L~aQV~~L~-----------~El-~La~sr~iTV 79 (257)
+|+|-++.++.=+......||.. ...+.|.++|.+|+ +.| .+.-+|.||=
T Consensus 9 ~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK 76 (118)
T PRK11020 9 RLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITK 76 (118)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccH
Confidence 45666666666555555666665 45666777766664 445 5666788875
No 457
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=34.57 E-value=39 Score=22.46 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=20.1
Q ss_pred eeeEeecCCcchhHHHhhhhHHH
Q 025142 104 GYMWWKGLSFADLMYVTRKSMAT 126 (257)
Q Consensus 104 gYmwWKGws~sDlMfVTkr~ms~ 126 (257)
-|+.|+|++-++--+++..++..
T Consensus 20 ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 20 YLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred EEEEECCCCCccCceeeHHHHHH
Confidence 46899999999988999988876
No 458
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=34.55 E-value=1.6e+02 Score=21.87 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=26.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
++.+|-.....-..+.+.-......+.++..=++-+++.+=.|..|+|
T Consensus 6 ~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiD 53 (57)
T PF02346_consen 6 IEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKID 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333333333333444444444456666667777777777777776
No 459
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.51 E-value=3.2e+02 Score=24.45 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=50.0
Q ss_pred HHHHHHh---hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhc
Q 025142 149 LTQRIQN---LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDG 225 (257)
Q Consensus 149 LsqRI~~---vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~ 225 (257)
|+-||.. ..+.+++|......+-.|+..-+.-=.+....-.++...|...|.+|. .-|.||-+.+.|
T Consensus 7 ~~dri~Al~~iEkeI~~~mq~Ag~iiqeLgKEK~~~kn~e~qa~~F~ksit~VE~eLS----------aQi~YLtqV~tG 76 (180)
T KOG4057|consen 7 LTDRIQALVTIEKEIDEMMQCAGEIIQELGKEKQIGKNMEDQANNFKKSITQVENELS----------AQIQYLTQVCTG 76 (180)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcC
Confidence 3445544 456788888888888777766655555566777788888888888887 457889888877
Q ss_pred cc
Q 025142 226 KK 227 (257)
Q Consensus 226 ~~ 227 (257)
..
T Consensus 77 qp 78 (180)
T KOG4057|consen 77 QP 78 (180)
T ss_pred CC
Confidence 65
No 460
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=34.42 E-value=3.3e+02 Score=28.88 Aligned_cols=58 Identities=16% Similarity=0.331 Sum_probs=39.8
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (257)
+.|..+-..-+.+..++.+++..|...++.+.++|+..-.++.+..+=+..+-+++..
T Consensus 127 aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~ 184 (676)
T PRK05683 127 AARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQ 184 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777788888888888888888888888887776555555444444444444443
No 461
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=34.37 E-value=1.2e+02 Score=22.36 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=32.7
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (257)
|-.+..++-+|..+.--. +..-.++.--+.|||..|..+|.+...=.+..+.+...
T Consensus 2 ~~k~~~la~~~~L~~~~~---~~~a~a~~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 2 KIKKLALAVAILLASSAC---SASAQAAPLTIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred cccHHHHHHHHHHHHHHH---HHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555444333 22223334458899999999988876666666665543
No 462
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.33 E-value=4.3e+02 Score=28.55 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=62.4
Q ss_pred HHHHHHHh-hhhcCCCeEEEeCC-CC---Cc--------------ceeehhhhhHhhhhheeeeEeecCCcchhHHHhhh
Q 025142 62 LNRLKFEC-QRASSGQIFVRNEN-SG---GN--------------ATSLMIPAATLGALGYGYMWWKGLSFADLMYVTRK 122 (257)
Q Consensus 62 V~~L~~El-~La~sr~iTVvn~~-sG---g~--------------~s~~ivpaA~vGavGYgYmwWKGws~sDlMfVTkr 122 (257)
+++||..+ .-.-.+.|+..+.+ +| .. .-+..+++.+-+..|+++|-|=-|.++=++|++=-
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P 299 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVP 299 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhc
Confidence 77888888 65556677777754 55 11 22456788888999999999999999999998866
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAK 146 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tK 146 (257)
-..=+..-.++.++++|..++++-
T Consensus 300 ~v~~~~~~yG~~~rklS~~~Q~a~ 323 (716)
T KOG0058|consen 300 IVALVAKIYGKYLRKLSKQTQDAL 323 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777766666666653
No 463
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.29 E-value=2.4e+02 Score=26.22 Aligned_cols=40 Identities=13% Similarity=0.352 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
+||.+|+++... ||..++|- ..|++|..+.....+++...
T Consensus 153 ~Ld~ls~ti~rl-k~~a~~~g---~EL~~Q~~llDdl~~e~d~t 192 (235)
T KOG3202|consen 153 GLDGLSATVQRL-KGMALAMG---EELEEQGRLLDDLDNEMDRT 192 (235)
T ss_pred HHHHHHHHHHHH-HHHHHHHh---HHHHHHHHHHHHHHHHHHHH
Confidence 466666666654 34555543 56666666655444444333
No 464
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.20 E-value=2.1e+02 Score=21.72 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=37.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHH
Q 025142 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNF 222 (257)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f 222 (257)
+..+|.+-.+.+.+.++|-..+...--....-|+.++..+..+|..+..+..+.+-...-+..|-++
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666555555555556666666666666666665555555444444444433
No 465
>PRK12803 flagellin; Provisional
Probab=34.19 E-value=4.4e+02 Score=25.48 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=23.6
Q ss_pred CchHHHHHHHHHHHHHh-hhhcC---CCeEEEeC
Q 025142 53 NFTDAIKDQLNRLKFEC-QRASS---GQIFVRNE 82 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~La~s---r~iTVvn~ 82 (257)
.+-.+|+.+++.|.+|| .++.+ ...-++++
T Consensus 105 ~dR~ai~~Ei~qL~~~i~~ian~t~fnG~~lf~g 138 (335)
T PRK12803 105 ADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSN 138 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCCeeeccC
Confidence 44578999999999999 88873 46666654
No 466
>PRK09546 zntB zinc transporter; Reviewed
Probab=34.06 E-value=3.5e+02 Score=25.14 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=16.1
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
..++.+.+.++-+|++..+.....|-....++
T Consensus 224 l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~ 255 (324)
T PRK09546 224 MQDIADRLGRGLDDLDACIARTAVLADEIASV 255 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666655555554444433
No 467
>PHA03332 membrane glycoprotein; Provisional
Probab=34.05 E-value=1.7e+02 Score=33.25 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhhhHHHhhhh----HHHHHHHHHhhhhh
Q 025142 166 ISKDIRKNVEEACDDLFKVEHN----LKDLQSMIYCLDGK 201 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~d----v~~v~~~V~~Le~K 201 (257)
++...++.+.++.+-++...++ +..+..-+..|..+
T Consensus 924 isatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 924 ISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555444443333 33444445555544
No 468
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=34.05 E-value=3.2e+02 Score=23.80 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=50.2
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
--|.++.+.+...++|-++.+..-+...++|-..=+++...=+|+.+.=..-+. -+-.-+..++.-+..+++.++-
T Consensus 23 i~tlkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld----~vf~aV~dl~~SV~~ln~s~r~ 98 (139)
T COG4768 23 IITLKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLD----PVFDAVKDLGQSVSDLNQSVRH 98 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 348888888888888888888888887777765554444333333332222222 1222334456666667777777
Q ss_pred hhhhhhh
Q 025142 198 LDGKIDS 204 (257)
Q Consensus 198 Le~Ki~~ 204 (257)
+-.|+.+
T Consensus 99 ~~~~~t~ 105 (139)
T COG4768 99 LATRATN 105 (139)
T ss_pred HHHHHhh
Confidence 7666654
No 469
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.03 E-value=2.8e+02 Score=23.13 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=5.8
Q ss_pred HHhhhhhhhhhhh
Q 025142 195 IYCLDGKIDSLAD 207 (257)
Q Consensus 195 V~~Le~Ki~~ie~ 207 (257)
..-|+.|-+++|.
T Consensus 88 LellGEK~E~veE 100 (120)
T PF12325_consen 88 LELLGEKSEEVEE 100 (120)
T ss_pred HHHhcchHHHHHH
Confidence 3344444444443
No 470
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=34.01 E-value=1.6e+02 Score=20.41 Aligned_cols=41 Identities=37% Similarity=0.513 Sum_probs=24.5
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+--..+...+++|.++...|.+.|......+..-...+..+
T Consensus 18 ~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka 58 (63)
T PF05739_consen 18 QMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKA 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777777777766666665554444443
No 471
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=34.00 E-value=3.5e+02 Score=26.06 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHh-hhhcC
Q 025142 54 FTDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 54 ~~d~L~aQV~~L~~El-~La~s 74 (257)
+-.+++.+++.|.+++ .++..
T Consensus 106 ~r~aia~e~~~l~~~l~~~~Nt 127 (404)
T PRK08870 106 DRQAIATELQGLRDQLLNLANS 127 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4468999999999999 77753
No 472
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=34.00 E-value=3.8e+02 Score=27.07 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHH-----HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQ-----NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 136 eqVsesL~~tKkhLsqRI~~vd~kld~~-----~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
|........+|.+|..-|-.+.++|++. .+-.+.+++.+.+.++=+. ..|...++...+.|+..+..++.+
T Consensus 517 D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~--~~d~~~i~~~~~~l~~~~~~~~~~ 592 (595)
T TIGR02350 517 DKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALK--GEDVEEIKAKTEELQQALQKLAEA 592 (595)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667778888888888888642 2222333333333333232 236666666666666666665543
No 473
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=33.75 E-value=22 Score=24.73 Aligned_cols=20 Identities=20% Similarity=0.875 Sum_probs=11.8
Q ss_pred eehhhhhHhh-hhh-eeeeEee
Q 025142 90 SLMIPAATLG-ALG-YGYMWWK 109 (257)
Q Consensus 90 ~~ivpaA~vG-avG-YgYmwWK 109 (257)
+.++|.+++. +++ ..|+|||
T Consensus 16 ~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 16 GVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EEEechHHHHHHHHHHhheEEe
Confidence 5567766653 333 4566886
No 474
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=33.73 E-value=2.7e+02 Score=22.98 Aligned_cols=86 Identities=14% Similarity=0.280 Sum_probs=49.4
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
+..++...|+.|-.=|.+ .+.=...+..|..++.+++..++....-.+..++++.+....+.....+...++..+..++
T Consensus 29 ~~~~~~~vin~i~~Ll~~-~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQ-RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred ccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333322 2333445566666666666666666666666666666666666666666666666666666
Q ss_pred hhhhhhh
Q 025142 200 GKIDSLA 206 (257)
Q Consensus 200 ~Ki~~ie 206 (257)
.++....
T Consensus 108 ~~~k~~k 114 (151)
T PF11559_consen 108 AKLKQEK 114 (151)
T ss_pred HHHHHHH
Confidence 6665443
No 475
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=33.70 E-value=1.2e+02 Score=26.41 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (257)
+.+++..+-..+. +.+......++|.+|++.+..+|+.+.+.-..|.+..
T Consensus 38 v~~~v~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A 87 (180)
T PF04678_consen 38 VKEAVHRLLPLLN-VEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKA 87 (180)
T ss_pred HHHHHHHHhcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544443322 3334445566677777777777777665555555444
No 476
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.56 E-value=1.9e+02 Score=29.21 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH----HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK----NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~----eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.|...+|.+.++++.+-.+-++...-.+.... +..++..++..+..+++.+....+.++.++..+
T Consensus 33 ~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 33 ELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 477
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.56 E-value=1.2e+02 Score=29.07 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH-HHhhhhhhhhh
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM-IYCLDGKIDSL 205 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~-V~~Le~Ki~~i 205 (257)
..|..+|.+|..-|.+-..+.-.-.+++++++.| .+-..+++..|.+ |..|-.|+.+.
T Consensus 228 ~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~ 286 (305)
T KOG3990|consen 228 QKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEES 286 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHH
No 478
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=33.52 E-value=34 Score=38.80 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred eeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025142 105 YMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 105 YmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
|+.|||||-=.-=|.|.-+|...-....|.|++.-.-....++.+. +++-..+
T Consensus 229 lIKWkg~SyLHctWet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r---------------------------~E~~~~~ 281 (1373)
T KOG0384|consen 229 LIKWKGWSYLHCTWETESELLEMNVRGLKKVDNFKKKVIEEDRWRR---------------------------QEREEDL 281 (1373)
T ss_pred heeeccccceeccccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---------------------------hhhhhhh
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
..|...|.++|..--.+- ..|||.|.+
T Consensus 282 ~~dy~~VdRIia~~~~~d-------------~eYLvKW~~ 308 (1373)
T KOG0384|consen 282 NKDYVIVDRIIAEQTSKD-------------PEYLVKWRG 308 (1373)
T ss_pred hhhhhhhhhhhhcccCCC-------------ceeEEEecC
No 479
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=33.49 E-value=2e+02 Score=25.72 Aligned_cols=72 Identities=15% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHh----------hhhHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025142 117 MYVT----------RKSMATAVSNLNKHLESVT-EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 117 MfVT----------kr~ms~Av~sv~kqLeqVs-esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
||.. ..++...+..+-+.+-... ..|......|..+|.++++++++..+-....++.. .
T Consensus 155 lF~~~~~~~~~~~~~~Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l----------~ 224 (239)
T PF07195_consen 155 LFAGDGTKDGTVYSTSGIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERL----------R 224 (239)
T ss_pred HHccCccccccccccccHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q ss_pred hhHHHHHHHHHhh
Q 025142 186 HNLKDLQSMIYCL 198 (257)
Q Consensus 186 ~dv~~v~~~V~~L 198 (257)
..+..+...+..|
T Consensus 225 ~qf~~me~~i~~l 237 (239)
T PF07195_consen 225 KQFSAMESLISQL 237 (239)
T ss_pred HHHHHHHHHHHHh
No 480
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=33.39 E-value=2.7e+02 Score=25.06 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHH--HHHHHHHHhhhhHHH---hhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISK--DIRKNVEEACDDLFK---VEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~--~i~~eV~~v~~d~~~---i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
|..++..|.+|..+++.+++++.+.++ ..+++-..+..=+.+ ....++++.....+||.-+..||..+.
T Consensus 32 Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~ 105 (191)
T PTZ00446 32 NREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHL 105 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=33.17 E-value=1.8e+02 Score=21.32 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
++.+.+||+.+..+++.-..+-+...+=+.....+-.. .+...++.....-..||+.+
T Consensus 4 ~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~--~~~~~~~~~l~es~~ki~~L 61 (72)
T cd00089 4 RSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKK--KLLAEAEQMLRESKQKLELL 61 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cCHHHHHHHHHHHHHHHHHH
No 482
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=33.13 E-value=3.4e+02 Score=23.90 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=0.0
Q ss_pred chhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 114 ADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 114 sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
|.+-|+.|+.+.. ...-..+++--+.|...+..|..++..+..+.+....-.+.-+.... ....++++.++.
T Consensus 106 s~~~f~~rk~l~~--e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~------k~~~~ei~~lk~ 177 (189)
T PF10211_consen 106 SSIAFGMRKALQA--EQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE------KKHQEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhh
Q 025142 194 MIYCLDGKIDSL 205 (257)
Q Consensus 194 ~V~~Le~Ki~~i 205 (257)
.-..|..+|++|
T Consensus 178 ~~~ql~~~l~~~ 189 (189)
T PF10211_consen 178 QNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHhcC
No 483
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=33.13 E-value=3.7e+02 Score=27.19 Aligned_cols=85 Identities=9% Similarity=0.141 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh--hHHHhhhhHHHHHHHHH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD--DLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~--d~~~i~~dv~~v~~~V~ 196 (257)
+.|..+-.+-.++.+++.++++.|...++.+.++|+..-+++....+-...+-+++..... .=..-.+=.++=...+.
T Consensus 128 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndL~DqRD~ll~ 207 (547)
T PRK08147 128 AARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITRLTGVGAGASPNDLLDQRDQLVS 207 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHH
Q ss_pred hhhhhhh
Q 025142 197 CLDGKID 203 (257)
Q Consensus 197 ~Le~Ki~ 203 (257)
.|-..++
T Consensus 208 eLS~~v~ 214 (547)
T PRK08147 208 ELNQIVG 214 (547)
T ss_pred HHHhhcC
No 484
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=33.13 E-value=2.5e+02 Score=22.36 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHh-hhhcC-----------CCeEEEeCCCCCcceeehhhhh-Hhhhhhe
Q 025142 37 ELQSLVERLSKSGEQDNFTDAIKDQLNRLKFEC-QRASS-----------GQIFVRNENSGGNATSLMIPAA-TLGALGY 103 (257)
Q Consensus 37 ~lq~~lk~~~k~gd~~~~~d~L~aQV~~L~~El-~La~s-----------r~iTVvn~~sGg~~s~~ivpaA-~vGavGY 103 (257)
.++..+..+.+. .+.|.+++..|...+ .+..+ ..-+.|.-|+|.-+.+-+.+.= ++.-+|.
T Consensus 3 ql~~q~~ql~~~------i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~ 76 (126)
T TIGR00293 3 QLAAELQILQQQ------VESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGS 76 (126)
T ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCC
Q ss_pred eeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 025142 104 GYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 104 gYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k 159 (257)
||+-.+-+ ==.+.-+.+=++.+.++++.+...++.-++.+++=.+.++.+
T Consensus 77 g~~vE~~~------~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~~ 126 (126)
T TIGR00293 77 GYYVEKDA------EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQL 126 (126)
T ss_pred CEEEEecH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 485
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=33.10 E-value=4.4e+02 Score=25.13 Aligned_cols=90 Identities=8% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH------HHHhhh
Q 025142 126 TAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS------MIYCLD 199 (257)
Q Consensus 126 ~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~------~V~~Le 199 (257)
++++.|+..|--+...+.+.-.++.++++.--..|-.. ..+.+.|...|+.=..+.++|..++. .+..||
T Consensus 96 ddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~Le 171 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSI----RNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLE 171 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHH
Q ss_pred hhhhhhhhhhhhHhHHHHHH
Q 025142 200 GKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 200 ~Ki~~ie~kQd~tn~GV~~L 219 (257)
..|.+.|..-..+-.-+..+
T Consensus 172 qELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 172 QELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHh
No 486
>PHA02607 wac fibritin; Provisional
Probab=32.75 E-value=2.4e+02 Score=28.82 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH--------HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK--------QNEISKDIRKNVEEACDDLFKVEHNLKDLQSM 194 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~--------~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (257)
+|..|--.|-|..+++-+-...+|..+..=++.+..-.+- .-+-..+...+|..++.++++...++..+...
T Consensus 42 ~lNRa~v~VQ~NV~~ld~n~~~~~~kine~vd~vn~I~~~L~~~gD~~~i~qv~~n~~dI~~lk~~~~~~~~~l~~~~~~ 121 (454)
T PHA02607 42 SLNRAGVNVQKNVEQLDENTKKTKDKINEVVDDVNTIQENLDVIGDISVIDQINQNVADIEVLKKDVSDTTDKLAGTTNE 121 (454)
T ss_pred ccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred HHhhhhhhhhhhhhhhhHhHHHHHHHHHhhcccCCcccchhcc
Q 025142 195 IYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGRTTESMQVG 237 (257)
Q Consensus 195 V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~~~~~ 237 (257)
+..++.+|.......|...+=|+.=.-|++.+-|.-|.+=..|
T Consensus 122 ~~~~~~~iG~~~p~~d~~~rTVr~di~~IK~elG~y~g~diNG 164 (454)
T PHA02607 122 VDEIEADIGVFNPEADPVTRTIRNDILWIKTELGAYPGFDING 164 (454)
T ss_pred HHHHHHhcCCcCcccCCCccchhhhHHHHHHHhccCCCCCCCC
No 487
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=32.71 E-value=3.1e+02 Score=26.71 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHhhHHh-----------------HHHHHHHHHHHHH
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVT---EALTVAKKHLTQRIQNLNDK-----------------VEKQNEISKDIRK 172 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs---esL~~tKkhLsqRI~~vd~k-----------------ld~~~eis~~i~~ 172 (257)
+.+++.+...-..++++-+.+-|...- +.+.+.+.-...=++..++- ++.+.++.++-++
T Consensus 195 ~~ey~~~~~~~~~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe 274 (320)
T TIGR01834 195 MADYQLLEADIGYKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQE 274 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHH-hhhhHHHHHHHHHhhhhhhhhhh
Q 025142 173 NVEEACDDLFK-VEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 173 eV~~v~~d~~~-i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.+.+.-..+-- .++||+.+++.+..||.++.+++
T Consensus 275 ~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~ 309 (320)
T TIGR01834 275 IVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLK 309 (320)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=32.63 E-value=34 Score=28.26 Aligned_cols=75 Identities=21% Similarity=0.383 Sum_probs=0.0
Q ss_pred EeCCCCCcceeehhhhhHhhhhheeeeEeecCCcchhHHHh-hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Q 025142 80 RNENSGGNATSLMIPAATLGALGYGYMWWKGLSFADLMYVT-RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLND 158 (257)
Q Consensus 80 vn~~sGg~~s~~ivpaA~vGavGYgYmwWKGws~sDlMfVT-kr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~ 158 (257)
+++.+-|.++..++ ++|.+|+.+-.--=.---+|=|.+ ||.-.+|+..+++. +|..|++.+
T Consensus 29 ~d~~~AGi~sq~~l---v~glvgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~~~~~~~-------------~lqkRle~l-- 90 (104)
T PF11460_consen 29 LDSLSAGIWSQALL---VLGLVGWVSSYLFRVVTGKMTYMQQRKDYEEAVDQLTNE-------------ELQKRLEEL-- 90 (104)
T ss_pred CCchhhhHHHHHHH---HHHHHHHHhHHHhhhccCCCcHHHHHHHHHHHHHHHhHH-------------HHHHHHHhC--
Q ss_pred hHHHHHHHHHHHHH
Q 025142 159 KVEKQNEISKDIRK 172 (257)
Q Consensus 159 kld~~~eis~~i~~ 172 (257)
+-+|+..+.++|.+
T Consensus 91 ~~eE~~~L~~eiee 104 (104)
T PF11460_consen 91 SPEELEALQAEIEE 104 (104)
T ss_pred CHHHHHHHHHHhcC
No 489
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=32.58 E-value=4.8e+02 Score=26.05 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHh-hhhcCCCeEEEeCCCCCcce-----eehhhh----hHhhhhhe
Q 025142 34 LLRELQSLVERLSKSGEQDNFTDAIKDQLNRLKFEC-QRASSGQIFVRNENSGGNAT-----SLMIPA----ATLGALGY 103 (257)
Q Consensus 34 ~~g~lq~~lk~~~k~gd~~~~~d~L~aQV~~L~~El-~La~sr~iTVvn~~sGg~~s-----~~ivpa----A~vGavGY 103 (257)
.+..+..+++.+.+ +....+.+|+.++++.+ +-...+.++++.+++..... ...++. .++-..|.
T Consensus 296 ~iaal~aAl~~i~~-----~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I 370 (475)
T PLN03226 296 TIAALAVALKQAMT-----PEFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHI 370 (475)
T ss_pred HHHHHHHHHHHHhC-----cCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCC
Q ss_pred eeeEe------ecCCcchhHH----HhhhhHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH--HHHHHHH
Q 025142 104 GYMWW------KGLSFADLMY----VTRKSMATA-VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ--NEISKDI 170 (257)
Q Consensus 104 gYmwW------KGws~sDlMf----VTkr~ms~A-v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~--~eis~~i 170 (257)
.--.+ +.|.-|=+=. +|+|+|... +..++.-+..+-+.....|+.-...+.+....++.- .+....+
T Consensus 371 ~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (475)
T PLN03226 371 TLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIALKIQKEHGKKLKDFKKGLESNDFSKDIEAL 450 (475)
T ss_pred EECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhhhccccccHHHHHHH
Q ss_pred HHHHHHh
Q 025142 171 RKNVEEA 177 (257)
Q Consensus 171 ~~eV~~v 177 (257)
+++|.++
T Consensus 451 ~~~v~~~ 457 (475)
T PLN03226 451 RAEVEEF 457 (475)
T ss_pred HHHHHHH
No 490
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.46 E-value=1.7e+02 Score=27.14 Aligned_cols=71 Identities=15% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHH----HHHH------------HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALT----VAKK------------HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~----~tKk------------hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
|+.=|++++..+..|+|..-..+. ..|| +|..+|++.-..+....-+...+.++--+. +++..
T Consensus 123 ~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~-e~V~~ 201 (233)
T PF04065_consen 123 ARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDP-EQVED 201 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHH
Q ss_pred hhhhHHHH
Q 025142 184 VEHNLKDL 191 (257)
Q Consensus 184 i~~dv~~v 191 (257)
|.+||+..
T Consensus 202 ikedieyY 209 (233)
T PF04065_consen 202 IKEDIEYY 209 (233)
T ss_pred HHHHHHHH
No 491
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.35 E-value=2.6e+02 Score=23.36 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH----HHHHHH
Q 025142 123 SMATAVSNLNKHLE--SVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDI----RKNVEE 176 (257)
Q Consensus 123 ~ms~Av~sv~kqLe--qVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i----~~eV~~ 176 (257)
++++...-+...-. ...+.+....+.+..+|+.++.++.+..+....+ ++++++
T Consensus 58 sL~eI~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~ 117 (134)
T cd04779 58 SLAEIKDQLEEVQRSDKEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTK 117 (134)
T ss_pred CHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.23 E-value=4.5e+02 Score=25.06 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 132 ~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
.++.-+-++....-|.....+|......|+++.|=-++.++++.+++..+..+..-+..++.--..|+..+..+..|..
T Consensus 181 a~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 181 AKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=32.22 E-value=1.1e+02 Score=29.63 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH-------hhhhHHH
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK-------VEHNLKD 190 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~-------i~~dv~~ 190 (257)
|+.+--..|-|..-++-+..++..++-=...|..|++.+=..++++....+++.+.+..+++-|.. ++.|+
T Consensus 203 ~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~-- 280 (307)
T PF15112_consen 203 HIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEEL-- 280 (307)
T ss_pred cCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHH--
Q ss_pred HHHHHHhhhhhhhhhhh
Q 025142 191 LQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 191 v~~~V~~Le~Ki~~ie~ 207 (257)
+.+..|+.|+.+.+.
T Consensus 281 --qkL~~l~~k~~~~~~ 295 (307)
T PF15112_consen 281 --QKLDSLQTKHQKLES 295 (307)
T ss_pred --HHHHHHHHHhcchhh
No 494
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=32.16 E-value=2.4e+02 Score=22.83 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
|-++.+.|...-.++..+++....+.++...-.+.-++++..++...
T Consensus 71 Ll~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 71 LLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 495
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=32.12 E-value=3.8e+02 Score=28.01 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
+-+..-++..-+.++.--.....++..+. .||..+..++.-.+.-.+.+.+|+..++...++|..+++.++.-+..
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
No 496
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=32.03 E-value=3.7e+02 Score=23.96 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred hhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH-HHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 115 DLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD-IRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~-i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
|.|---||.|+++...+++.+..++..=..+ -|++-+.++.+--+...++... -.++...+.+.+...-+.+.+++.
T Consensus 36 e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~--~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~ 113 (224)
T cd07623 36 ESLVNHRKELALNTGSFAKSAAMLSNCEEHT--SLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKD 113 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 025142 194 MIY 196 (257)
Q Consensus 194 ~V~ 196 (257)
++.
T Consensus 114 ~f~ 116 (224)
T cd07623 114 VFH 116 (224)
T ss_pred HHH
No 497
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.01 E-value=1.3e+02 Score=33.06 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhH
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
.+++.=..++......+..|+....+.++.+......+.++-..+...+++....++.....+..|-.|+.+++..-+..
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse 888 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSE 888 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcch
Q ss_pred h
Q 025142 213 N 213 (257)
Q Consensus 213 n 213 (257)
+
T Consensus 889 ~ 889 (970)
T KOG0946|consen 889 T 889 (970)
T ss_pred H
No 498
>PRK04406 hypothetical protein; Provisional
Probab=31.94 E-value=2.3e+02 Score=21.65 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 136 eqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+...+.+.+--.+|.-||...++.+|+.+++.-.=+.++..++..+..+..-++++
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 499
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.93 E-value=5.5e+02 Score=29.22 Aligned_cols=118 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.++-+.-.+.=++.++.|.-.-.+|.+-|+.....+.+...-+..++.++..++..+.....|++..+.-+.....|+.
T Consensus 803 ~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~- 881 (1174)
T KOG0933|consen 803 AEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQR- 881 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH-
Q ss_pred hhhhhhhHhHHHHHHHHHhhccc--CCcccchhccccccccccC
Q 025142 205 LADKQDITNIGMYLLCNFVDGKK--GRTTESMQVGIVGYFLYDS 246 (257)
Q Consensus 205 ie~kQd~tn~GV~~Lc~f~~~~~--~~~~~~~~~~i~~~~~~~~ 246 (257)
-+|--..++.-.|+-+..++ +.+|....++=+.++.++.
T Consensus 882 ---~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~ 922 (1174)
T KOG0933|consen 882 ---DIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEK 922 (1174)
T ss_pred ---hhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhH
No 500
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.91 E-value=4.4e+02 Score=27.08 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
+|-+..+.-++.++-..++...++=..-.+.-+.-......+-++|++.|...+.++.+ +.++++.-...+.+.|.+
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~---~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTK---EIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 025142 205 LADK 208 (257)
Q Consensus 205 ie~k 208 (257)
+...
T Consensus 135 l~~~ 138 (472)
T TIGR03752 135 LQRR 138 (472)
T ss_pred HHHH
Done!