Query 025142
Match_columns 257
No_of_seqs 68 out of 70
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:32:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba2_A D12_ORF131, hypothetica 94.8 0.065 2.2E-06 41.4 6.2 77 118-206 8-84 (85)
2 2no2_A HIP-I, huntingtin-inter 93.2 1.4 4.6E-05 34.9 11.2 79 129-207 11-96 (107)
3 1m1j_B Fibrinogen beta chain; 91.2 2.5 8.6E-05 41.1 12.6 96 113-208 87-190 (464)
4 2zdi_C Prefoldin subunit alpha 90.7 4.9 0.00017 32.5 12.1 117 30-183 6-137 (151)
5 3g67_A Methyl-accepting chemot 90.4 3.1 0.00011 36.1 11.3 39 124-162 5-43 (213)
6 1deq_A Fibrinogen (alpha chain 89.8 3.1 0.00011 39.7 11.6 97 113-209 54-157 (390)
7 3ghg_A Fibrinogen alpha chain; 89.6 4 0.00014 40.6 12.5 96 113-208 51-153 (562)
8 3okq_A BUD site selection prot 89.5 3.1 0.00011 34.8 10.0 76 140-215 10-105 (141)
9 3g67_A Methyl-accepting chemot 89.4 6.8 0.00023 34.0 12.7 74 130-203 4-77 (213)
10 3mq9_A Bone marrow stromal ant 89.1 5.8 0.0002 36.6 12.8 77 124-201 357-433 (471)
11 3na7_A HP0958; flagellar bioge 88.9 2.8 9.6E-05 36.6 10.0 57 146-202 27-83 (256)
12 3oja_A Leucine-rich immune mol 87.2 3.1 0.00011 38.6 9.7 66 156-221 412-477 (487)
13 3trt_A Vimentin; cytoskeleton, 86.9 6.9 0.00024 28.2 9.6 69 123-191 6-75 (77)
14 1m1j_A Fibrinogen alpha subuni 86.5 9.5 0.00033 37.4 12.8 100 109-208 48-154 (491)
15 2yo3_A General control protein 85.0 2.4 8.1E-05 38.7 7.4 57 135-191 200-256 (268)
16 3hnw_A Uncharacterized protein 84.8 9.5 0.00033 31.1 10.4 64 148-211 72-135 (138)
17 3tnu_B Keratin, type II cytosk 84.6 2 6.8E-05 34.2 6.1 70 133-205 22-94 (129)
18 2akf_A Coronin-1A; coiled coil 84.3 0.74 2.5E-05 29.3 2.7 28 182-209 2-29 (32)
19 1c1g_A Tropomyosin; contractIl 84.1 15 0.00051 29.5 13.4 36 171-206 68-103 (284)
20 3mq9_A Bone marrow stromal ant 84.0 12 0.0004 34.5 11.9 42 122-163 369-416 (471)
21 2xzr_A Immunoglobulin-binding 83.9 15 0.0005 29.3 11.3 72 123-194 31-105 (114)
22 3o0z_A RHO-associated protein 83.6 16 0.00056 31.1 11.6 78 122-206 58-138 (168)
23 4dnd_A Syntaxin-10, SYN10; str 83.3 3.3 0.00011 33.5 7.0 27 120-146 68-94 (130)
24 3oja_B Anopheles plasmodium-re 83.2 11 0.00038 35.5 11.5 36 122-157 459-494 (597)
25 1deq_A Fibrinogen (alpha chain 83.1 6.1 0.00021 37.8 9.6 68 123-190 92-159 (390)
26 3cvf_A Homer-3, homer protein 82.4 2.9 0.0001 31.7 5.8 28 147-174 23-50 (79)
27 3a7p_A Autophagy protein 16; c 82.1 20 0.00069 30.2 11.4 69 127-210 59-128 (152)
28 3tnu_A Keratin, type I cytoske 82.1 2.1 7.1E-05 34.3 5.3 73 130-205 21-96 (131)
29 2jee_A YIIU; FTSZ, septum, coi 82.0 11 0.00039 28.6 9.0 67 153-219 8-74 (81)
30 3onj_A T-snare VTI1; helix, HA 82.0 6.3 0.00021 30.1 7.7 53 122-177 8-60 (97)
31 2qyw_A Vesicle transport throu 81.9 5.6 0.00019 30.7 7.5 60 115-177 15-75 (102)
32 1fxk_C Protein (prefoldin); ar 81.8 3.8 0.00013 32.2 6.6 42 142-183 86-127 (133)
33 3na7_A HP0958; flagellar bioge 81.7 9.6 0.00033 33.2 9.8 64 153-216 62-127 (256)
34 2w83_C C-JUN-amino-terminal ki 81.7 10 0.00035 28.7 8.5 65 122-207 5-72 (77)
35 1gl2_D Syntaxin 8, vesicle tra 80.7 6.9 0.00024 27.4 7.1 51 151-201 9-59 (65)
36 3htk_A Structural maintenance 80.6 7.4 0.00025 26.7 7.0 44 157-200 11-54 (60)
37 3oja_B Anopheles plasmodium-re 80.5 30 0.001 32.5 13.5 14 197-210 548-561 (597)
38 2l5g_B Putative uncharacterize 80.5 1.6 5.6E-05 29.6 3.4 22 145-166 3-24 (42)
39 1ic2_A Tropomyosin alpha chain 80.1 14 0.00048 27.2 8.8 55 150-204 19-73 (81)
40 3gwk_C SAG1039, putative uncha 80.0 15 0.0005 26.6 11.0 76 128-203 13-93 (98)
41 3c9i_A Tail needle protein GP2 79.1 6.8 0.00023 34.9 7.9 97 111-208 36-141 (242)
42 1m1j_B Fibrinogen beta chain; 78.2 25 0.00086 34.1 12.3 11 242-252 231-241 (464)
43 1n7s_D SNAP-25A; neuronal snar 77.8 15 0.00053 25.7 8.4 46 148-193 7-52 (66)
44 3u59_A Tropomyosin beta chain; 77.4 22 0.00074 27.1 11.2 70 149-218 21-90 (101)
45 3ghg_A Fibrinogen alpha chain; 77.4 10 0.00035 37.8 9.3 75 138-212 51-129 (562)
46 4aj5_A SKA1, spindle and kinet 76.4 25 0.00086 27.3 9.6 46 176-225 34-79 (91)
47 3u1c_A Tropomyosin alpha-1 cha 76.3 24 0.00082 27.1 11.2 55 150-204 22-76 (101)
48 3zbh_A ESXA; unknown function, 76.0 19 0.00064 25.7 11.5 27 130-156 16-42 (99)
49 3m0a_A TNF receptor-associated 76.0 17 0.00058 25.5 7.9 58 149-206 3-60 (66)
50 1t3j_A Mitofusin 1; coiled coi 75.4 12 0.00042 29.2 7.6 16 145-160 48-63 (96)
51 3htk_A Structural maintenance 75.4 17 0.00057 24.8 7.7 43 135-177 10-52 (60)
52 1sfc_D Protein (SNAP-25B), pro 75.2 21 0.00073 26.5 8.7 40 152-191 30-69 (87)
53 3efg_A Protein SLYX homolog; x 75.0 6.9 0.00024 29.2 5.9 54 147-207 10-63 (78)
54 4abx_A DNA repair protein RECN 75.0 9 0.00031 31.6 7.2 92 112-207 67-164 (175)
55 1l8d_A DNA double-strand break 74.2 26 0.00088 26.4 10.3 75 128-202 5-101 (112)
56 1vcs_A Vesicle transport throu 74.1 2.9 0.0001 32.2 3.7 54 121-177 11-64 (102)
57 3zx6_A HAMP, methyl-accepting 74.0 49 0.0017 29.6 13.8 38 31-69 4-50 (341)
58 1m1j_C Fibrinogen gamma chain; 74.0 29 0.00098 33.1 11.3 92 113-205 25-124 (409)
59 2nps_D Syntaxin-6; vesicle fus 73.2 15 0.00052 27.0 7.4 40 182-221 36-75 (82)
60 2dfs_A Myosin-5A; myosin-V, in 72.2 34 0.0012 36.1 12.3 15 121-135 923-937 (1080)
61 2xdj_A Uncharacterized protein 71.7 18 0.0006 27.3 7.5 28 169-196 31-58 (83)
62 4ioe_A Secreted protein ESXB; 71.3 25 0.00084 24.9 10.8 30 127-156 13-42 (93)
63 3ghg_C Fibrinogen gamma chain; 70.9 36 0.0012 32.6 11.2 94 113-207 25-126 (411)
64 1m1j_A Fibrinogen alpha subuni 70.8 32 0.0011 33.7 10.9 69 123-191 90-158 (491)
65 4ioe_A Secreted protein ESXB; 70.5 26 0.00088 24.8 9.3 31 133-163 12-42 (93)
66 2jee_A YIIU; FTSZ, septum, coi 70.2 33 0.0011 26.0 9.6 53 152-204 28-80 (81)
67 2v71_A Nuclear distribution pr 69.2 56 0.0019 28.2 13.7 100 120-219 29-135 (189)
68 3cvf_A Homer-3, homer protein 68.6 28 0.00096 26.2 8.0 63 142-207 4-66 (79)
69 3swy_A Cyclic nucleotide-gated 67.3 12 0.0004 25.7 5.1 36 124-159 10-45 (46)
70 1ic2_A Tropomyosin alpha chain 67.1 34 0.0012 25.0 9.9 66 149-214 4-69 (81)
71 2q6q_A Spindle POLE BODY compo 67.1 32 0.0011 25.7 7.8 59 145-203 4-62 (74)
72 4dnd_A Syntaxin-10, SYN10; str 65.8 51 0.0017 26.5 9.9 93 107-206 19-125 (130)
73 3swf_A CGMP-gated cation chann 65.4 22 0.00075 26.7 6.7 39 124-162 12-50 (74)
74 1sfc_D Protein (SNAP-25B), pro 65.3 28 0.00095 25.9 7.4 36 182-217 46-81 (87)
75 4h22_A Leucine-rich repeat fli 65.1 36 0.0012 27.0 8.3 58 146-203 25-82 (103)
76 3zx6_A HAMP, methyl-accepting 63.9 82 0.0028 28.2 14.5 13 61-73 7-20 (341)
77 3fav_B ESAT-6, 6 kDa early sec 63.1 37 0.0013 24.2 7.6 28 135-162 10-37 (94)
78 1wle_A Seryl-tRNA synthetase; 62.5 33 0.0011 33.3 9.3 29 141-172 74-102 (501)
79 3hnw_A Uncharacterized protein 62.0 62 0.0021 26.2 9.6 53 151-203 82-134 (138)
80 4i0x_B ESAT-6-like protein MAB 61.9 46 0.0016 24.6 9.6 34 133-166 14-47 (103)
81 2nps_D Syntaxin-6; vesicle fus 61.7 21 0.00071 26.2 6.0 56 151-206 19-74 (82)
82 3ci9_A Heat shock factor-bindi 61.7 21 0.00072 24.6 5.6 39 125-163 5-43 (48)
83 3vkg_A Dynein heavy chain, cyt 61.6 96 0.0033 36.9 14.1 62 122-183 2010-2074(3245)
84 2v71_A Nuclear distribution pr 61.4 79 0.0027 27.2 12.1 100 124-223 22-132 (189)
85 3zbh_A ESXA; unknown function, 60.5 42 0.0014 23.7 10.4 31 133-163 12-42 (99)
86 3pwx_A Putative flagellar HOOK 60.4 83 0.0028 27.1 13.3 22 53-74 69-91 (239)
87 2zqm_A Prefoldin beta subunit 59.5 28 0.00095 26.2 6.6 15 55-69 22-36 (117)
88 4fla_A Regulation of nuclear P 59.2 75 0.0026 26.2 10.2 67 138-204 73-146 (152)
89 1jcd_A Major outer membrane li 59.1 31 0.0011 24.1 6.2 14 149-162 9-22 (52)
90 3s84_A Apolipoprotein A-IV; fo 59.0 45 0.0015 29.7 8.9 27 163-189 207-233 (273)
91 3cve_A Homer protein homolog 1 58.6 53 0.0018 24.3 8.2 47 147-193 17-63 (72)
92 1i84_S Smooth muscle myosin he 58.5 24 0.00081 37.3 7.9 10 55-64 697-706 (1184)
93 1l4a_D S-SNAP25 fusion protein 58.4 45 0.0015 24.9 7.5 28 189-216 54-81 (87)
94 1gl2_D Syntaxin 8, vesicle tra 58.3 22 0.00077 24.7 5.5 35 182-216 26-60 (65)
95 2pnv_A Small conductance calci 57.2 20 0.00068 24.2 4.7 30 137-166 9-38 (43)
96 3gwk_C SAG1039, putative uncha 57.2 50 0.0017 23.6 9.9 32 133-164 11-42 (98)
97 2b9c_A Striated-muscle alpha t 56.9 73 0.0025 26.1 9.2 69 151-219 52-120 (147)
98 2ch7_A Methyl-accepting chemot 56.8 92 0.0031 26.5 14.3 24 179-202 100-123 (309)
99 2v66_B Nuclear distribution pr 56.8 73 0.0025 25.3 10.0 45 122-166 6-50 (111)
100 3a7p_A Autophagy protein 16; c 55.8 44 0.0015 28.1 7.7 23 186-208 96-118 (152)
101 3v86_A De novo design helix; c 55.5 12 0.00042 22.8 3.1 23 169-191 4-26 (27)
102 3gp4_A Transcriptional regulat 55.2 77 0.0026 25.2 9.2 30 146-175 83-112 (142)
103 3fav_A ESAT-6-like protein ESX 54.9 58 0.002 23.6 8.7 68 135-202 12-91 (101)
104 3hd7_B Syntaxin-1A; membrane p 54.9 22 0.00074 27.5 5.4 52 165-216 7-65 (109)
105 2bez_C E2 glycoprotein; coiled 54.4 67 0.0023 24.2 8.7 64 123-207 13-76 (77)
106 3zcc_A HAMP, osmolarity sensor 54.0 51 0.0017 22.7 8.5 22 164-185 65-86 (114)
107 3nmd_A CGMP dependent protein 53.9 46 0.0016 24.8 6.7 46 128-174 15-63 (72)
108 3fx7_A Putative uncharacterize 53.8 76 0.0026 24.6 8.5 73 128-200 11-84 (94)
109 2vs0_A Virulence factor ESXA; 52.5 58 0.002 22.9 10.2 33 169-201 57-89 (97)
110 1ses_A Seryl-tRNA synthetase; 51.9 57 0.002 30.6 8.7 27 142-171 33-59 (421)
111 3hd7_A Vesicle-associated memb 51.9 73 0.0025 23.9 9.5 23 134-156 6-28 (91)
112 1m1j_C Fibrinogen gamma chain; 51.7 1.6E+02 0.0056 27.9 12.0 12 241-252 167-178 (409)
113 3gp4_A Transcriptional regulat 51.6 47 0.0016 26.4 7.1 10 107-116 56-65 (142)
114 1jcd_A Major outer membrane li 51.5 43 0.0015 23.3 5.9 13 152-164 5-17 (52)
115 3qne_A Seryl-tRNA synthetase, 51.4 43 0.0015 32.5 8.0 63 142-208 38-100 (485)
116 1j1d_B Troponin T, TNT; THIN f 51.4 44 0.0015 26.3 6.7 26 176-202 67-92 (106)
117 2nrj_A HBL B protein; enteroto 50.1 1.5E+02 0.0052 27.0 11.7 53 145-197 117-173 (346)
118 2xdj_A Uncharacterized protein 49.5 63 0.0022 24.3 7.0 53 150-209 5-57 (83)
119 1fxk_A Prefoldin; archaeal pro 49.5 47 0.0016 24.5 6.3 19 121-139 60-78 (107)
120 1n7s_D SNAP-25A; neuronal snar 49.3 63 0.0022 22.4 7.3 41 176-216 21-61 (66)
121 2dq0_A Seryl-tRNA synthetase; 49.2 47 0.0016 31.6 7.8 63 142-208 36-98 (455)
122 1kmi_Z CHEZ, chemotaxis protei 49.0 89 0.003 27.0 8.9 28 196-223 126-156 (214)
123 3u59_A Tropomyosin beta chain; 48.7 85 0.0029 23.7 11.8 66 134-199 34-99 (101)
124 2p22_A Suppressor protein STP2 48.4 20 0.00069 30.6 4.6 33 202-234 117-149 (174)
125 3m0d_C TNF receptor-associated 48.4 70 0.0024 22.6 7.2 15 192-206 47-61 (65)
126 3ol1_A Vimentin; structural ge 47.9 98 0.0033 24.2 11.0 69 143-211 33-101 (119)
127 3o0z_A RHO-associated protein 47.0 1.3E+02 0.0045 25.5 11.8 71 137-207 55-132 (168)
128 3kkj_A Amine oxidase, flavin-c 46.7 2.6 9E-05 31.9 -1.1 13 13-25 5-17 (336)
129 2c5k_T Syntaxin TLG1, T-snare 46.6 64 0.0022 24.6 6.8 24 184-207 66-89 (95)
130 3ghg_B Fibrinogen beta chain; 45.9 1.2E+02 0.0041 29.5 10.1 35 113-147 82-116 (461)
131 3vkg_A Dynein heavy chain, cyt 45.8 1.1E+02 0.0036 36.6 11.1 18 28-45 1682-1699(3245)
132 3uux_B Mitochondrial division 45.2 1.7E+02 0.0058 26.2 10.6 77 120-207 150-226 (242)
133 3mov_A Lamin-B1; LMNB1, B-type 45.2 1E+02 0.0034 23.5 7.8 69 128-203 14-82 (95)
134 1x8y_A Lamin A/C; structural p 45.1 92 0.0031 23.1 8.0 63 134-203 11-73 (86)
135 2zqm_A Prefoldin beta subunit 45.0 76 0.0026 23.7 7.0 18 121-138 65-82 (117)
136 1fzc_A Fibrin; blood coagulati 45.0 23 0.00079 27.3 3.9 43 147-189 3-45 (87)
137 2wrg_I Hemagglutinin HA2 chain 45.0 24 0.00081 31.3 4.5 78 119-196 36-123 (222)
138 3ghg_C Fibrinogen gamma chain; 44.7 2.2E+02 0.0074 27.2 12.3 86 138-223 25-128 (411)
139 1mqm_B Hemagglutinin HA2 chain 44.5 8.6 0.00029 34.0 1.7 78 119-196 36-123 (221)
140 3u1c_A Tropomyosin alpha-1 cha 44.2 1E+02 0.0035 23.4 11.3 61 139-199 39-99 (101)
141 1lwu_C Fibrinogen gamma chain; 43.5 44 0.0015 30.8 6.4 18 186-203 40-57 (323)
142 1x79_B RAB GTPase binding effe 43.4 1.2E+02 0.0042 24.1 9.6 64 135-198 8-71 (112)
143 1wt6_A Myotonin-protein kinase 43.4 1.1E+02 0.0036 23.3 7.4 11 120-130 11-21 (81)
144 1jsd_B Haemagglutinin (HA2 cha 42.8 34 0.0012 29.3 5.0 46 119-164 36-88 (176)
145 4etp_A Kinesin-like protein KA 42.6 59 0.002 30.4 7.2 13 189-201 48-60 (403)
146 3c9i_A Tail needle protein GP2 42.5 1.1E+02 0.0037 27.3 8.3 55 153-207 93-147 (242)
147 1fxk_A Prefoldin; archaeal pro 42.5 69 0.0024 23.6 6.3 15 55-69 17-31 (107)
148 2pjw_V Vacuolar protein sortin 42.4 1.1E+02 0.0037 23.4 7.5 56 133-205 33-88 (91)
149 2rft_B Influenza B hemagglutin 42.3 16 0.00054 31.3 2.9 46 119-164 36-88 (176)
150 1wyy_A E2 glycoprotein; membra 42.3 1.4E+02 0.0049 24.9 8.7 30 181-210 63-92 (149)
151 1l4a_D S-SNAP25 fusion protein 42.2 68 0.0023 23.9 6.2 58 147-204 26-83 (87)
152 1aq5_A Matrilin-1, CMP, cartil 41.9 60 0.0021 22.3 5.3 10 149-158 35-44 (47)
153 3zrx_A AF1503 protein, osmolar 41.8 80 0.0028 21.5 6.8 12 61-72 10-22 (115)
154 3kpe_A Fusion glycoprotein F0; 41.3 77 0.0026 22.1 5.8 39 158-196 4-42 (51)
155 1lwu_A Fibrinogen alpha-1 chai 40.8 49 0.0017 26.8 5.5 42 148-189 26-67 (119)
156 3tul_A Cell invasion protein S 40.8 56 0.0019 27.6 6.0 18 188-205 71-88 (158)
157 1wyy_A E2 glycoprotein; membra 40.7 17 0.00058 30.5 2.8 31 127-157 58-88 (149)
158 2dq3_A Seryl-tRNA synthetase; 40.7 56 0.0019 30.7 6.8 64 142-209 35-98 (425)
159 3plt_A Sphingolipid long chain 40.5 2E+02 0.0067 25.6 12.2 84 125-212 61-150 (234)
160 3ci9_A Heat shock factor-bindi 40.3 49 0.0017 22.7 4.7 37 124-160 7-47 (48)
161 1xwj_B Talin, metavinculin; ce 40.2 19 0.00064 21.6 2.2 24 120-143 2-25 (26)
162 3lss_A Seryl-tRNA synthetase; 40.0 98 0.0033 30.0 8.5 22 141-162 41-62 (484)
163 3rkg_A Magnesium transporter M 39.8 96 0.0033 27.7 7.8 39 124-164 132-170 (261)
164 3ku3_B Hemagglutinin HA2 chain 39.7 25 0.00085 30.1 3.7 78 118-195 35-122 (174)
165 2c5k_T Syntaxin TLG1, T-snare 39.2 52 0.0018 25.1 5.2 29 120-148 37-65 (95)
166 2bez_C E2 glycoprotein; coiled 38.8 63 0.0021 24.4 5.4 19 125-143 22-40 (77)
167 1mqs_A SLY1 protein, SLY1P; SM 38.7 1.9E+02 0.0066 28.4 10.5 68 114-181 329-431 (671)
168 3u06_A Protein claret segregat 38.4 78 0.0027 29.8 7.4 55 141-202 7-61 (412)
169 3m5g_B Hemagglutinin; influenz 38.2 13 0.00045 32.0 1.8 78 118-195 35-122 (182)
170 4ack_A TSSL; protein transport 38.1 59 0.002 28.1 5.9 64 160-224 7-70 (185)
171 3trt_A Vimentin; cytoskeleton, 37.9 1.1E+02 0.0036 21.7 9.0 37 170-206 40-76 (77)
172 1ez3_A Syntaxin-1A; three heli 37.9 92 0.0031 23.5 6.5 16 128-143 14-29 (127)
173 2d4y_A HAP1, flagellar HOOK-as 37.5 2.6E+02 0.0088 26.0 10.8 42 119-160 64-105 (463)
174 2i0m_A Phosphate transport sys 37.5 1.3E+02 0.0043 24.4 7.7 80 120-199 12-108 (216)
175 1sum_B Phosphate transport sys 37.4 1.7E+02 0.006 24.1 9.2 81 120-200 12-109 (235)
176 2j69_A Bacterial dynamin-like 37.3 1.9E+02 0.0066 28.5 10.3 24 184-207 660-683 (695)
177 2v66_B Nuclear distribution pr 37.3 1.5E+02 0.0053 23.4 12.1 72 147-218 6-81 (111)
178 4g2k_A General control protein 37.3 78 0.0027 25.8 6.2 12 184-195 65-76 (125)
179 2ocy_A RAB guanine nucleotide 37.2 1.3E+02 0.0046 25.0 7.8 14 56-69 16-29 (154)
180 3f6n_A Virion-associated prote 37.2 72 0.0025 26.1 5.9 31 160-190 4-34 (129)
181 2dq0_A Seryl-tRNA synthetase; 37.1 1.5E+02 0.0052 28.1 9.2 37 185-221 68-104 (455)
182 3h6p_C ESAT-6-like protein ESX 37.0 53 0.0018 23.7 4.8 36 166-201 54-89 (96)
183 2bsg_A Fibritin; viral protein 37.0 47 0.0016 32.6 5.7 84 122-207 43-129 (487)
184 3mts_A Histone-lysine N-methyl 36.9 14 0.00048 26.2 1.5 21 105-125 19-39 (64)
185 1d7m_A Cortexillin I; coiled-c 36.9 1.5E+02 0.0051 23.2 7.9 76 124-206 2-80 (101)
186 4etp_A Kinesin-like protein KA 36.7 62 0.0021 30.3 6.3 13 193-205 45-57 (403)
187 3q0x_A Centriole protein; cent 36.6 1.1E+02 0.0039 26.9 7.7 27 121-147 166-192 (228)
188 2p22_A Suppressor protein STP2 36.1 2E+02 0.0068 24.4 10.4 41 185-225 55-95 (174)
189 3edv_A Spectrin beta chain, br 36.1 2E+02 0.0068 24.4 9.4 58 146-204 187-244 (323)
190 3swk_A Vimentin; cytoskeleton, 35.7 1.3E+02 0.0046 22.3 10.8 68 143-210 13-80 (86)
191 2l7b_A Apolipoprotein E, APO-E 35.3 1.2E+02 0.004 27.6 7.8 25 137-161 100-124 (307)
192 2nps_B Syntaxin 13, vesicle-as 35.3 82 0.0028 22.2 5.5 51 173-223 7-61 (71)
193 3c8u_A Fructokinase; YP_612366 35.2 39 0.0013 27.2 4.2 52 62-115 8-65 (208)
194 1t3j_A Mitofusin 1; coiled coi 35.1 1.2E+02 0.004 23.6 6.7 31 124-154 34-64 (96)
195 3e7k_A TRPM7 channel; coiled-c 35.0 1.2E+02 0.0041 21.5 7.6 45 125-173 8-52 (56)
196 1q08_A Zn(II)-responsive regul 35.0 89 0.0031 22.5 5.8 59 150-208 9-75 (99)
197 2nrj_A HBL B protein; enteroto 34.9 2.1E+02 0.0073 26.0 9.6 76 128-203 118-193 (346)
198 3oja_A Leucine-rich immune mol 34.7 1E+02 0.0036 28.3 7.5 35 170-204 433-467 (487)
199 1lwu_C Fibrinogen gamma chain; 34.6 42 0.0015 31.0 4.8 13 241-253 90-102 (323)
200 4f23_A Hemagglutinin, H16; sia 34.6 31 0.0011 34.1 4.0 79 118-196 369-457 (515)
201 2vs0_A Virulence factor ESXA; 34.5 1.2E+02 0.004 21.2 9.5 30 134-163 10-39 (97)
202 4abx_A DNA repair protein RECN 34.5 1.8E+02 0.0063 23.5 8.3 70 122-191 90-162 (175)
203 1wle_A Seryl-tRNA synthetase; 34.5 2.7E+02 0.0094 26.9 10.6 31 189-219 119-149 (501)
204 2l3l_A Tubulin-specific chaper 34.3 1.6E+02 0.0056 22.9 8.7 72 133-206 31-104 (111)
205 1wt6_A Myotonin-protein kinase 34.2 1.5E+02 0.0052 22.5 8.6 40 167-206 26-65 (81)
206 2fxo_A Myosin heavy chain, car 33.7 1.7E+02 0.0059 22.9 10.0 31 141-171 73-103 (129)
207 1go4_E MAD1 (mitotic arrest de 33.6 38 0.0013 26.6 3.7 37 170-206 10-46 (100)
208 3he5_B Synzip2; heterodimeric 33.3 74 0.0025 21.9 4.6 34 174-207 12-45 (52)
209 3nmd_A CGMP dependent protein 33.2 77 0.0026 23.5 5.1 41 153-193 28-68 (72)
210 2dfs_A Myosin-5A; myosin-V, in 33.1 4.4E+02 0.015 27.8 12.6 56 123-179 957-1012(1080)
211 2efr_A General control protein 33.0 2.1E+02 0.0072 23.7 9.8 66 133-198 87-152 (155)
212 1p68_A De novo designed protei 32.9 24 0.00083 27.1 2.4 20 29-48 3-22 (102)
213 1cxz_B Protein (PKN); protein- 32.8 1.6E+02 0.0056 22.4 8.6 64 140-207 21-84 (86)
214 1l8d_A DNA double-strand break 32.5 1.5E+02 0.0053 22.0 9.1 12 133-144 3-14 (112)
215 3gpv_A Transcriptional regulat 32.3 1E+02 0.0035 24.5 6.2 22 185-206 108-129 (148)
216 1nfn_A Apolipoprotein E3; lipi 32.2 2.2E+02 0.0076 23.8 8.6 25 164-188 98-122 (191)
217 3efg_A Protein SLYX homolog; x 32.0 1.2E+02 0.0042 22.3 6.1 44 147-190 17-60 (78)
218 2xz3_A Maltose ABC transporter 31.7 1E+02 0.0035 28.1 6.9 60 154-219 360-419 (463)
219 2bbh_A Divalent cation transpo 31.7 93 0.0032 26.2 6.2 66 132-199 174-239 (269)
220 2a01_A Apolipoprotein A-I; fou 31.4 2.2E+02 0.0075 24.5 8.6 23 166-188 104-126 (243)
221 2eqb_B RAB guanine nucleotide 31.1 1.7E+02 0.006 22.7 7.1 52 141-192 9-60 (97)
222 3cve_A Homer protein homolog 1 30.9 1.6E+02 0.0055 21.7 8.8 55 149-206 5-59 (72)
223 1lq7_A Alpha3W; three helix bu 30.4 65 0.0022 23.1 4.1 19 185-203 47-65 (67)
224 2wr1_A Hemagglutinin; glycopro 30.3 48 0.0016 32.7 4.5 78 119-196 376-463 (509)
225 1gl2_B Syntaxin 7; membrane pr 30.2 1.2E+02 0.0042 21.0 5.6 43 172-214 9-51 (65)
226 2xu6_A MDV1 coiled coil; prote 30.0 1.7E+02 0.0058 21.7 7.4 52 149-207 19-70 (72)
227 3zrx_A AF1503 protein, osmolar 29.7 1.3E+02 0.0045 20.3 8.1 17 166-182 67-83 (115)
228 2lf0_A Uncharacterized protein 29.6 1.1E+02 0.0037 24.9 5.8 55 149-212 8-62 (123)
229 3ghg_B Fibrinogen beta chain; 29.6 2.8E+02 0.0097 26.9 9.7 23 184-206 161-183 (461)
230 3nvo_A Zinc transport protein 29.5 39 0.0013 28.5 3.4 67 130-199 148-214 (264)
231 3p8q_A GP5, head protein; viru 29.0 12 0.0004 34.4 0.0 35 164-205 33-67 (385)
232 4i78_C Hemagglutinin HA2; infl 29.0 30 0.001 29.8 2.5 78 118-195 35-122 (181)
233 3hd7_A Vesicle-associated memb 29.0 1.8E+02 0.0061 21.6 8.1 24 129-152 8-31 (91)
234 1jth_B Syntaxin 1A; coiled-coi 28.9 1.6E+02 0.0054 21.0 6.7 53 172-224 10-66 (77)
235 4ev6_A Magnesium transport pro 28.2 2.5E+02 0.0086 24.8 8.7 20 122-141 167-186 (339)
236 4i0x_B ESAT-6-like protein MAB 28.1 1.8E+02 0.006 21.3 8.6 11 123-133 15-25 (103)
237 4egw_A Magnesium transport pro 27.9 92 0.0031 26.7 5.6 64 134-199 161-224 (280)
238 3m91_A Proteasome-associated A 27.8 1.5E+02 0.0052 20.4 6.5 35 148-182 13-47 (51)
239 1fxk_C Protein (prefoldin); ar 27.8 2.1E+02 0.007 22.0 11.0 35 99-146 74-108 (133)
240 2lf0_A Uncharacterized protein 27.6 30 0.001 28.2 2.2 36 31-66 15-56 (123)
241 1t72_A Phosphate transport sys 27.5 2.4E+02 0.0084 22.7 8.9 80 120-199 16-112 (227)
242 2z5i_A TM, general control pro 27.4 1.1E+02 0.0036 21.1 4.7 30 147-176 15-44 (52)
243 1gk4_A Vimentin; intermediate 27.1 1.8E+02 0.0063 21.2 9.9 37 166-202 34-70 (84)
244 3ljm_A Coil Ser L9C; de novo d 27.0 1.1E+02 0.0039 19.0 4.2 25 139-163 3-27 (31)
245 1lrz_A FEMA, factor essential 26.4 1.6E+02 0.0055 26.9 7.2 27 121-147 242-268 (426)
246 2r2v_A GCN4 leucine zipper; co 26.3 78 0.0027 20.5 3.5 24 152-175 2-25 (34)
247 1urq_A M-tomosyn isoform; tran 26.2 1.7E+02 0.006 20.6 7.1 30 128-157 6-35 (63)
248 3m9b_A Proteasome-associated A 26.2 84 0.0029 28.3 5.1 33 148-180 58-90 (251)
249 3qne_A Seryl-tRNA synthetase, 26.2 3.3E+02 0.011 26.4 9.6 24 120-143 41-64 (485)
250 3oz2_A Digeranylgeranylglycero 26.2 9.5 0.00032 32.5 -1.1 13 13-25 7-19 (397)
251 2lw1_A ABC transporter ATP-bin 26.1 1.9E+02 0.0066 21.1 7.6 23 153-175 24-46 (89)
252 2bni_A General control protein 26.1 73 0.0025 20.6 3.3 27 152-178 2-28 (34)
253 2fxo_A Myosin heavy chain, car 25.8 2.4E+02 0.0082 22.0 12.6 10 146-155 36-45 (129)
254 1gd2_E Transcription factor PA 25.7 1.9E+02 0.0066 20.9 8.2 50 140-189 18-67 (70)
255 3c3f_A Alpha/beta peptide with 25.3 84 0.0029 20.3 3.5 26 152-177 2-27 (34)
256 2fyz_B Fusion protein, fusion 25.0 70 0.0024 22.0 3.4 21 131-151 12-32 (48)
257 2yo3_A General control protein 24.9 3.1E+02 0.011 24.9 8.5 60 118-177 197-256 (268)
258 2zvf_A Alanyl-tRNA synthetase; 24.6 1.3E+02 0.0044 23.9 5.5 52 185-237 81-148 (171)
259 2jqq_A Conserved oligomeric go 24.6 55 0.0019 28.7 3.4 100 130-237 4-108 (204)
260 2iub_A CORA, divalent cation t 24.4 1.1E+02 0.0036 27.6 5.5 27 4-31 21-51 (363)
261 1xwm_A PHOU, phosphate uptake 24.3 2.8E+02 0.0096 22.3 9.0 78 121-198 13-107 (217)
262 1cii_A Colicin IA; bacteriocin 24.2 2.7E+02 0.0091 27.7 8.4 83 149-232 354-443 (602)
263 1qu7_A Methyl-accepting chemot 24.0 3.3E+02 0.011 23.1 12.4 18 56-73 69-87 (227)
264 3r4h_A Coiled coil helix CC-TE 23.9 67 0.0023 20.4 2.8 24 169-192 6-29 (34)
265 3b5n_D Protein transport prote 23.9 1.9E+02 0.0066 20.3 8.0 19 189-207 34-52 (64)
266 3lss_A Seryl-tRNA synthetase; 23.8 1.9E+02 0.0067 27.9 7.5 11 143-153 57-67 (484)
267 2iub_A CORA, divalent cation t 23.7 3.9E+02 0.013 23.8 9.6 19 124-142 193-211 (363)
268 3u0c_A Invasin IPAB, 62 kDa an 23.5 3.6E+02 0.012 23.3 10.0 45 164-208 92-139 (201)
269 2yp5_A Hemagglutinin, haemaggl 23.4 30 0.001 34.1 1.7 78 119-196 365-452 (503)
270 1rty_A YVQK protein; all alpha 23.1 2.2E+02 0.0076 24.2 7.0 45 162-206 55-101 (193)
271 3b5n_D Protein transport prote 23.0 2E+02 0.0069 20.2 7.8 18 158-175 31-48 (64)
272 3b5n_B Protein SSO1; snare com 23.0 2E+02 0.0068 20.1 6.7 42 172-213 10-51 (69)
273 3gpv_A Transcriptional regulat 22.8 2.3E+02 0.008 22.3 6.7 29 146-174 97-125 (148)
274 2vrs_A Sigma-C capsid protein; 22.8 52 0.0018 29.0 2.9 37 171-207 3-39 (211)
275 2hy6_A General control protein 22.7 92 0.0031 20.1 3.3 20 155-174 5-24 (34)
276 2p32_A Heat shock 70 kDa prote 22.7 2.5E+02 0.0086 21.2 6.7 15 187-201 69-83 (120)
277 3kpe_A Fusion glycoprotein F0; 22.7 1.1E+02 0.0038 21.3 4.1 30 124-153 16-45 (51)
278 1q08_A Zn(II)-responsive regul 22.6 1.6E+02 0.0055 21.1 5.3 36 143-178 38-73 (99)
279 1gl2_C VTI1B, vesicle transpor 22.6 2E+02 0.0069 20.1 5.8 8 137-144 6-13 (65)
280 1n7s_B Syntaxin 1A; neuronal s 22.6 2E+02 0.0068 20.0 6.7 42 172-213 12-53 (68)
281 3m9b_A Proteasome-associated A 22.4 68 0.0023 28.9 3.7 43 151-193 54-96 (251)
282 3bbp_D GRIP and coiled-coil do 22.2 1.2E+02 0.0041 22.5 4.3 28 118-145 14-41 (71)
283 1hx1_B BAG-1, BAG-family molec 22.0 2.1E+02 0.007 23.0 6.1 45 122-166 14-64 (114)
284 4hb9_A Similarities with proba 22.0 13 0.00044 32.1 -1.1 12 13-24 4-15 (412)
285 3tnu_B Keratin, type II cytosk 21.9 2.8E+02 0.0097 21.5 10.8 41 162-202 79-119 (129)
286 2wuj_A Septum site-determining 21.9 75 0.0026 21.9 3.1 26 181-206 29-54 (57)
287 2ke4_A CDC42-interacting prote 21.8 2.7E+02 0.0093 21.3 7.5 17 146-162 17-33 (98)
288 1lwu_A Fibrinogen alpha-1 chai 21.7 1.3E+02 0.0046 24.3 4.9 41 136-179 21-61 (119)
289 3u06_A Protein claret segregat 21.7 2.4E+02 0.0082 26.4 7.5 55 122-180 6-60 (412)
290 2g2d_A ATP:cobalamin adenosylt 21.6 2.5E+02 0.0087 23.8 7.0 21 162-182 58-78 (193)
291 1r8e_A Multidrug-efflux transp 21.6 2.2E+02 0.0074 23.8 6.6 10 107-116 60-69 (278)
292 1svf_B Protein (fusion glycopr 21.6 97 0.0033 20.1 3.4 22 131-152 10-31 (38)
293 1sfc_B Protein (syntaxin 1A), 21.5 2.3E+02 0.008 20.4 6.7 53 172-224 21-77 (83)
294 2olt_A Hypothetical protein; s 21.4 3.4E+02 0.012 22.3 9.4 18 189-206 160-177 (227)
295 4dpv_Z Protein (parvovirus coa 21.4 27 0.00093 34.8 1.0 11 101-111 522-532 (584)
296 2hn1_A CORA, magnesium and cob 21.3 62 0.0021 27.4 3.1 64 132-198 175-238 (266)
297 3hhm_B NISH2 P85alpha; PI3KCA, 21.2 4.9E+02 0.017 24.0 11.6 41 117-157 124-164 (373)
298 1gmj_A ATPase inhibitor; coile 21.2 2.8E+02 0.0094 21.1 6.5 9 142-150 42-50 (84)
299 1ses_A Seryl-tRNA synthetase; 21.1 4E+02 0.014 24.8 8.9 34 187-220 65-98 (421)
300 2b2y_C CHD-1, chromodomain-hel 21.1 25 0.00084 28.2 0.5 23 104-126 60-82 (115)
301 3qfl_A MLA10; coiled-coil, (CC 21.1 1.8E+02 0.0063 22.0 5.6 26 185-210 58-83 (115)
302 3eq2_A Probable two-component 21.1 4.2E+02 0.014 23.1 8.7 77 73-157 76-153 (394)
303 4b4t_J 26S protease regulatory 21.0 78 0.0027 29.9 4.0 44 146-189 20-63 (405)
304 1xsv_A Hypothetical UPF0122 pr 20.9 2.7E+02 0.0092 20.9 7.4 34 123-156 43-76 (113)
305 2pnv_A Small conductance calci 20.8 69 0.0023 21.5 2.6 16 196-211 19-34 (43)
306 1kmi_Z CHEZ, chemotaxis protei 20.7 4E+02 0.014 22.8 11.6 48 158-205 116-166 (214)
307 1h2v_C 80 kDa nuclear CAP bind 20.7 2.2E+02 0.0075 29.0 7.4 84 124-207 622-711 (771)
308 2y3w_A SAS6, spindle assembly 20.6 98 0.0033 26.0 4.2 32 143-174 150-181 (182)
309 3pp5_A BRK1, protein brick1; t 20.5 72 0.0025 23.7 2.9 27 180-206 46-72 (73)
310 3l39_A Putative PHOU-like phos 20.5 3.1E+02 0.011 23.0 7.4 77 130-206 98-178 (227)
311 2j69_A Bacterial dynamin-like 20.4 2.2E+02 0.0077 28.1 7.3 22 151-172 366-387 (695)
312 3tnu_A Keratin, type I cytoske 20.4 3.1E+02 0.011 21.4 10.8 61 143-203 58-122 (131)
313 2f42_A STIP1 homology and U-bo 20.4 1.4E+02 0.0046 25.1 5.0 21 128-148 5-25 (179)
314 1i6z_A BAG-family molecular ch 20.3 3.6E+02 0.012 22.1 7.8 25 122-146 24-48 (135)
315 2gtl_N Extracellular hemoglobi 20.2 1.3E+02 0.0045 26.5 5.0 13 151-163 10-22 (220)
316 1v9d_A Diaphanous protein homo 20.0 3.4E+02 0.012 24.2 7.9 40 190-229 249-288 (340)
317 1nfn_A Apolipoprotein E3; lipi 20.0 1.8E+02 0.006 24.4 5.6 6 60-65 58-63 (191)
No 1
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=94.81 E-value=0.065 Score=41.40 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=49.7
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHh
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYC 197 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~ 197 (257)
|||+|-+..-.... .++..|.+|...+...+.-|-|-+..=-+++.+++-....-|.-++.|-....+
T Consensus 8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78988877642221 345555556555555555555554444455666665556667777788888888
Q ss_pred hhhhhhhhh
Q 025142 198 LDGKIDSLA 206 (257)
Q Consensus 198 Le~Ki~~ie 206 (257)
+..+++.||
T Consensus 76 ~nkRLDkle 84 (85)
T 2ba2_A 76 INKRLDNLE 84 (85)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhccC
Confidence 888998886
No 2
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=93.17 E-value=1.4 Score=34.88 Aligned_cols=79 Identities=14% Similarity=0.243 Sum_probs=61.8
Q ss_pred HHHHHhh---HHHHHHHHHHHHHHHHHHHhhH----HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025142 129 SNLNKHL---ESVTEALTVAKKHLTQRIQNLN----DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 129 ~sv~kqL---eqVsesL~~tKkhLsqRI~~vd----~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
+.++||| .+..+.+..+|+.|..+|+.+. .|++++.+....++.++..=..++..+..+++.....=..|..+
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456665 4667788999999999999865 56778888888888888888888888888888887777777777
Q ss_pred hhhhhh
Q 025142 202 IDSLAD 207 (257)
Q Consensus 202 i~~ie~ 207 (257)
++.++.
T Consensus 91 ~~~l~~ 96 (107)
T 2no2_A 91 FAELEK 96 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766554
No 3
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=91.20 E-value=2.5 Score=41.09 Aligned_cols=96 Identities=13% Similarity=0.252 Sum_probs=60.0
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH-----Hh
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK---HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF-----KV 184 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKk---hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~-----~i 184 (257)
+.|++=-+.++....+..+...|++++..-++++. +|+..+...+.++.++.+..+.-.+++.+.+.-+. .+
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 48999999999999999999999999876666552 35555555555555544444444444433333222 23
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
...+..++..++.|..||..+|.+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666554
No 4
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=90.66 E-value=4.9 Score=32.47 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=63.0
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHH---HHHh-hhhc----------CCCeEEEeCCCCCcceeehhhh
Q 025142 30 KLPELLRELQSLVERLSKSGEQDNFTDAIKDQLNRL---KFEC-QRAS----------SGQIFVRNENSGGNATSLMIPA 95 (257)
Q Consensus 30 kLsd~~g~lq~~lk~~~k~gd~~~~~d~L~aQV~~L---~~El-~La~----------sr~iTVvn~~sGg~~s~~ivpa 95 (257)
.++.=+..|...+..++. ....|..+.++| ...+ +... ...-|-|.-|++.-..+-|.|+
T Consensus 6 ~~~~~l~ql~~~~qql~~------~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~ 79 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQA------QAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDK 79 (151)
T ss_dssp SSTTHHHHHHHHHHHHTT------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCT
T ss_pred hhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCC
Confidence 444445556666655553 355666666666 4433 2111 2234445655552111111111
Q ss_pred h-HhhhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 025142 96 A-TLGALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 96 A-~vGavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (257)
= ++.-+|.||+-.+- +..|++.|..||+.++..+++..+..+.+++++
T Consensus 80 ~~V~v~lG~g~~vE~~-------------------------------~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i 128 (151)
T 2zdi_C 80 NNAIVSVGSGYAVERS-------------------------------IDEAISFLEKRLKEYDEAIKKTQGALAELEKRI 128 (151)
T ss_dssp TEEEEEEETTEEEEEE-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCeEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12347888887764 356677777777777777777766666666666
Q ss_pred HHhhhhHHH
Q 025142 175 EEACDDLFK 183 (257)
Q Consensus 175 ~~v~~d~~~ 183 (257)
+.+...+.+
T Consensus 129 ~~~~~~l~~ 137 (151)
T 2zdi_C 129 GEVARKAQE 137 (151)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444433
No 5
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=90.37 E-value=3.1 Score=36.13 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~ 162 (257)
++.|+..++..+..+.+.++..-.++...++.+....++
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~ 43 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISEN 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444444444444433333333
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.81 E-value=3.1 Score=39.72 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=59.6
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVT-------EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVs-------esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+-++|==+.|++.+.++.+...|+.++ .-+..++..|.+|.....+.=+-..|.+..++.....+++.+..--
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667888888888887777663 3345555555555555555555566666666666666666665433
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 186 HNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
-+|+.|+..|+.+-.||.+||..-
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666666655443
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.62 E-value=4 Score=40.59 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=68.3
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh-------HHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK-------VEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k-------ld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+-++|-=+-|++.+-++.|-.+|++++..=..+-....+..+.|..+ -+-..|++.+.+..+..+++.|.+--
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788899999999999999998766555544444444444333 34445566667777777777776655
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhh
Q 025142 186 HNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
.-++.||..|+.+-.||.+||--
T Consensus 131 snIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888844
No 8
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=89.50 E-value=3.1 Score=34.75 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH------------HhhhhHHHhhhhHHHHHHHHH--------hhh
Q 025142 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE------------EACDDLFKVEHNLKDLQSMIY--------CLD 199 (257)
Q Consensus 140 esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~------------~v~~d~~~i~~dv~~v~~~V~--------~Le 199 (257)
.-+.+-|++|+.+.|+|-.|+|+.+.+.+..|++|. .+..|+.....|++.+...+. .+|
T Consensus 10 ~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE 89 (141)
T 3okq_A 10 MYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWE 89 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 346778999999999999999999999999998864 455666666666666666554 356
Q ss_pred hhhhhhhhhhhhHhHH
Q 025142 200 GKIDSLADKQDITNIG 215 (257)
Q Consensus 200 ~Ki~~ie~kQd~tn~G 215 (257)
..|..|..-|+|-|.=
T Consensus 90 ~EL~~VceEQqfl~~Q 105 (141)
T 3okq_A 90 AELDKVCEEQQFLTLQ 105 (141)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777776643
No 9
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=89.42 E-value=6.8 Score=33.99 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=39.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.+...+++++..+...-..+....+.+....+++.+.++.+.+.+......+.++...+..+...+..+..++.
T Consensus 4 qva~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T 3g67_A 4 EVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIR 77 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555554444444444444443333
No 10
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.12 E-value=5.8 Score=36.63 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
|.+++..+-..=..+-++|..+.+.+.+-|++.-.. .++......+|+++++++..+.+++-.-..-++.|.+|-..
T Consensus 357 ~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (471)
T 3mq9_A 357 VRTAVINAASGRQTVDEALKDAQTRITAARDGLRAV-MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS 433 (471)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHH-HHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH
Confidence 444444444333356677777777777777776433 47778888899999999999998888877777777666443
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.86 E-value=2.8 Score=36.64 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
+++|-..|+.+.+.+.....-...++.++.++...+.++..|++.++..+...+.++
T Consensus 27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444443333333333334444444444444444444433333333333
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.24 E-value=3.1 Score=38.65 Aligned_cols=66 Identities=15% Similarity=0.016 Sum_probs=51.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHH
Q 025142 156 LNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 156 vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
+....+++.++.++.+.+-..++.|.+.++.+++.+++.-..++..+.+++..=.-++.-...+|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 334555666777888888888888888888888888888888888888887777777777777665
No 13
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=86.94 E-value=6.9 Score=28.17 Aligned_cols=69 Identities=14% Similarity=0.299 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 123 SMATAVSNLNKHLESVTE-ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVse-sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.|+.+.+.|=.|-|.+-. .-+.+..-...+++.+........+-...++.|+++++..+..+..+++++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666777666655433 234455556677777666666666666666677666666666655555554
No 14
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=86.46 E-value=9.5 Score=37.38 Aligned_cols=100 Identities=13% Similarity=0.190 Sum_probs=83.4
Q ss_pred ecCCcchhHHHhhhhHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025142 109 KGLSFADLMYVTRKSMATAVSNLNKHLESV-------TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 109 KGws~sDlMfVTkr~ms~Av~sv~kqLeqV-------sesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
-|--+-++|-=+.|+..+.++.+.+.|+.+ +.-+..++.-|.+|.....+.=+-..|.+..++.....+++.+
T Consensus 48 SGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 48 SGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999988877 4557777888888888888888888899999999999999988
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 182 FKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
..--..+..||..|+.+-.||.+||.-
T Consensus 128 d~qi~~IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 128 ATQVNRIKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764488889999999999999998843
No 15
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=84.98 E-value=2.4 Score=38.73 Aligned_cols=57 Identities=16% Similarity=0.366 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
..|+++++..++....+|+..|+.++++...=..++.+.|.++-..+-.|..+++.+
T Consensus 200 v~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 200 YAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777899999988888888877766654444444444444444444444444333
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.79 E-value=9.5 Score=31.11 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=48.4
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
.+.++++.+...+++...=....+.++...+..++....++..++.-+..|+.++.++|.+.+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566677777776666677777888888888888888888888888888888888877654
No 17
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.65 E-value=2 Score=34.24 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 133 KHLESVTEALTVAKKH---LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 133 kqLeqVsesL~~tKkh---LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
++...-++.+..+|.+ +..+|+.|..+++.+...-......+.++.. +...+++.++..+..||.-+..+
T Consensus 22 ~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 22 QTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333344455555543 3446777777777666666666665555543 33445666666666666666544
No 18
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=84.34 E-value=0.74 Score=29.34 Aligned_cols=28 Identities=18% Similarity=0.488 Sum_probs=24.6
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
+++..|+.+++.+|..|..+++++|+.-
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999764
No 19
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=84.06 E-value=15 Score=29.46 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=14.8
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+.++..+...+..+..++..+...+..++..+..++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (284)
T 1c1g_A 68 QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQ 103 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444333
No 20
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.04 E-value=12 Score=34.55 Aligned_cols=42 Identities=7% Similarity=0.189 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHhhHHhHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEA------LTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVses------L~~tKkhLsqRI~~vd~kld~~ 163 (257)
.+...|++.+.+++++.-+. .+.+.++|.++|+++.+++-+.
T Consensus 369 ~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 369 QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDV 416 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHH
Confidence 45566666666666555443 3345667888898888887654
No 21
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=83.91 E-value=15 Score=29.30 Aligned_cols=72 Identities=15% Similarity=0.402 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSM 194 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~ 194 (257)
....++++=++.++.-|-+|++--|.|.| |++....+++|..+=-+++.+++.++-.+.-.+..++..++..
T Consensus 31 ~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 31 AIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45667788888888888888755555544 5555555555555555555566666666666666666555443
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.60 E-value=16 Score=31.12 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
+.+.++...+-+.+-++...|..=|+--++ +|.-+..++ .....|+..++...++...|...++..+..|
T Consensus 58 ~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri-------~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARI-------TSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544432222 222222222 2234555556666666677788888888888
Q ss_pred hhhhhhhh
Q 025142 199 DGKIDSLA 206 (257)
Q Consensus 199 e~Ki~~ie 206 (257)
|..-.+++
T Consensus 131 EKe~a~~e 138 (168)
T 3o0z_A 131 EKEKNNLE 138 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 87777666
No 23
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=83.32 E-value=3.3 Score=33.53 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAK 146 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tK 146 (257)
|++.|.++|.++..+|+.+.+++..+.
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.17 E-value=11 Score=35.50 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd 157 (257)
..+.+.+..+...+++....++..++++..|.+...
T Consensus 459 ~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 459 NELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 346678888888888888888888888888877665
No 25
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=83.12 E-value=6.1 Score=37.78 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
+|.+....-=+|..+.-..+...-.+|.+||.-|.++++.+..-.+..|..|...+.++.++..||+.
T Consensus 92 ~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 92 NIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444455567778888888898888887788888888888888888888854
No 26
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=82.39 E-value=2.9 Score=31.68 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=15.8
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV 174 (257)
..|..||..+...|++...=....+.|+
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666555555555554
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=82.13 E-value=20 Score=30.17 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=41.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 127 Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+|+.. +.+.+.-..|+.-..+|..||..++..+.+-....+.+++|. ..++--..-+|.|+..++
T Consensus 59 ~vs~~-~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl--------------~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 59 IVSHD-DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL--------------ISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 44444 334445566777777777777777766666555544444444 455555666677777666
Q ss_pred h-hhh
Q 025142 207 D-KQD 210 (257)
Q Consensus 207 ~-kQd 210 (257)
. ++.
T Consensus 124 ~EN~~ 128 (152)
T 3a7p_A 124 KEHSQ 128 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 5 443
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.07 E-value=2.1 Score=34.27 Aligned_cols=73 Identities=22% Similarity=0.370 Sum_probs=36.0
Q ss_pred HHHHhhHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 130 NLNKHLESVTEALTVAKKH---LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkh---LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.+.++...-++.+..+|.+ +..+|+.|...++.+...-......+.++.. +...+++.++..+..||.-+..+
T Consensus 21 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 21 ELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445666666653 4567788888887776666666666665543 34456667777777777777654
No 29
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.05 E-value=11 Score=28.61 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=34.8
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
++.|..|+++..+.+...+-+|.++++.-.....+.+.++.-...|+....++..-|..-...|..|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555544444444444333
No 30
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=82.03 E-value=6.3 Score=30.09 Aligned_cols=53 Identities=6% Similarity=0.184 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
..+...+++++..|+++...=...|+.+ |..++..+|+..|+..++.-||..+
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~~---i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRNTT---LKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4456777888888887763333344444 6677789999999999999999888
No 31
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=81.89 E-value=5.6 Score=30.69 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=41.3
Q ss_pred hhHHHhhhhHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 115 DLMYVTRKSMATAVSNLNKHLESVTEALT-VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 115 DlMfVTkr~ms~Av~sv~kqLeqVsesL~-~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
+++----+.+...++++++.++++..... ..|+.. |..++..|||..|+..++.-||..+
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~---i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKL---VRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444456667777788887777643322 444433 6677788999999999998888765
No 32
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=81.76 E-value=3.8 Score=32.17 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
+..|++.|..|++.++..+++..+....++++++.+...+.+
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777788877777777777777777777666555444
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.68 E-value=9.6 Score=33.22 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhh--hhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHH
Q 025142 153 IQNLNDKVEKQNEISKDIRKNVEEAC--DDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~--~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
+.++...+++..+-.+..++....++ .++..+..+++....-...||.++-++...-+....-+
T Consensus 62 ~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 62 VSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444432 23444555555555555556665555555554444433
No 34
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.67 E-value=10 Score=28.74 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=40.7
Q ss_pred hhHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 122 KSMATAVSNLN---KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 122 r~ms~Av~sv~---kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
++|.+-+.++= ++|-..-.+|.-+|+.|..|+|.|.+..+ .+..++.+++++-..+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e---------------------~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKD---------------------VLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHH
Confidence 45555555553 34444556788888999888887766543 3456677777888888
Q ss_pred hhhhhhhhh
Q 025142 199 DGKIDSLAD 207 (257)
Q Consensus 199 e~Ki~~ie~ 207 (257)
+.|+.++|.
T Consensus 64 ~~ri~elEe 72 (77)
T 2w83_C 64 EEKNRELEE 72 (77)
T ss_dssp HHHC-----
T ss_pred HHHHHHHHH
Confidence 888877764
No 35
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=80.71 E-value=6.9 Score=27.44 Aligned_cols=51 Identities=8% Similarity=0.231 Sum_probs=27.4
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025142 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
+.++.|..++..++.++..|.+||.+=-.=+.++..+++.....+..--.|
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~r 59 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARR 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666555444455555555554444433333
No 36
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=80.56 E-value=7.4 Score=26.69 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 157 NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 157 d~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
..+++++.+.-..++.+..+.+..+.+.-.++..++.-+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.53 E-value=30 Score=32.52 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=5.4
Q ss_pred hhhhhhhhhhhhhh
Q 025142 197 CLDGKIDSLADKQD 210 (257)
Q Consensus 197 ~Le~Ki~~ie~kQd 210 (257)
.||.+++....++.
T Consensus 548 ~le~~~~~~~~~~~ 561 (597)
T 3oja_B 548 ALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHH
Confidence 34444433333333
No 38
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=80.46 E-value=1.6 Score=29.64 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhHHhHHHHHHH
Q 025142 145 AKKHLTQRIQNLNDKVEKQNEI 166 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~ei 166 (257)
+|.+|-|+|++||..++...+=
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~k 24 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQ 24 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999988876433
No 39
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.10 E-value=14 Score=27.17 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=28.4
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
..|.+.+..++.+...-.....++|..++..+..+..|++....-+.....|+..
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554444444555555555555555555555555555544444443
No 40
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=79.99 E-value=15 Score=26.60 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=40.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh-----HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDK-----VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k-----ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
+...++++.+..+.|......|.+.|+.|... -+.-.+.-...+..+..+..-|..|...+...-...+.-|.++
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~ 92 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADI 92 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555544221 1222333444555566666666666666666666666666655
Q ss_pred h
Q 025142 203 D 203 (257)
Q Consensus 203 ~ 203 (257)
.
T Consensus 93 A 93 (98)
T 3gwk_C 93 A 93 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=79.08 E-value=6.8 Score=34.92 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=64.8
Q ss_pred CCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH------HH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH
Q 025142 111 LSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK------HL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDL 181 (257)
Q Consensus 111 ws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKk------hL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~ 181 (257)
+|.|=+|||-... .|--+-.+|-=|-=+++..+.-| .| ..||..+..++|+..+=+-...+.+..+.--+
T Consensus 36 FS~sYllyVi~qg-tDvG~VA~KANeAGqgAYdAQVrNDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Ri 114 (242)
T 3c9i_A 36 FSKSYLLYVIAQG-TDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRV 114 (242)
T ss_dssp SCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhccc-chHHHHhhhhhhhhhhhhHHHhcCcccceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhhee
Confidence 5677788887554 34444444444444444433322 23 57899999999988877766667777777777
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 182 FKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
.....|+..++.-|..||+|+...|.+
T Consensus 115 t~~e~~i~~l~~~v~~ld~~vt~~et~ 141 (242)
T 3c9i_A 115 TTAEGEIASLQTNVSALDGRVTTAENN 141 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhhhhhhhhhcccccccccc
Confidence 888888888888888888887755544
No 42
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=78.18 E-value=25 Score=34.12 Aligned_cols=11 Identities=0% Similarity=-0.121 Sum_probs=4.5
Q ss_pred ccccCCCCCcc
Q 025142 242 FLYDSNEIPSV 252 (257)
Q Consensus 242 ~~~~~~e~~~~ 252 (257)
.++|....+|+
T Consensus 231 ~I~p~~~~~pf 241 (464)
T 1m1j_B 231 IIQPDPFTTPY 241 (464)
T ss_dssp EECSSTTSCCE
T ss_pred EEEeCCCCccE
Confidence 34444433333
No 43
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=77.84 E-value=15 Score=25.67 Aligned_cols=46 Identities=2% Similarity=0.220 Sum_probs=23.0
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
+.-+.++.|..++..++.++..|-+|+..=-.=+..|..+++....
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~ 52 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444555555555555666666555554443334444444444433
No 44
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.41 E-value=22 Score=27.12 Aligned_cols=70 Identities=9% Similarity=0.108 Sum_probs=35.4
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHH
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYL 218 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (257)
..-|.+.+..++.+..+-.....++|..++..+..+..|++....-....-.++..-+..-.-+-..|..
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555666666666666666555555555544444444333333333333
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.40 E-value=10 Score=37.78 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH----HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhH
Q 025142 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR----KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 138 VsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~----~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
+...|-++-+-|+.||+.|-.++++...-.+.+. .....++.++.+.++.-..+.++-+.||.+|..|+.+-+--
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888887765555443 44555566666666333333333335666665555544433
No 46
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=76.38 E-value=25 Score=27.34 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=40.7
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhc
Q 025142 176 EACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDG 225 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~ 225 (257)
..+.-+..||.++-.|+...+.||.-+. .|.-++.-..-||++.+.
T Consensus 34 ~lk~~L~Kig~Ei~~l~eLLn~~E~eV~----~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 34 TLKTVLNKIGDEIIVINELLNKLELEIQ----YQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445578999999999999999999998 899999999999999874
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=76.26 E-value=24 Score=27.06 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=27.5
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.-|.+.+..++.+...-.....++|..++..+..+..|++..+..+...-.|+..
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555555555555555555544444444443
No 48
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=76.04 E-value=19 Score=25.68 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=12.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 025142 130 NLNKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsqRI~~v 156 (257)
.+++++.+..+.|......|.+.++.|
T Consensus 16 ~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 16 GVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 49
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=75.96 E-value=17 Score=25.46 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=38.9
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
|.+++.++..|++...-+...-..+|......++.....-..-+..+..||.|+.+++
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 5666677777777665555555566666666666665555555778888888887655
No 50
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=75.43 E-value=12 Score=29.21 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhHHhH
Q 025142 145 AKKHLTQRIQNLNDKV 160 (257)
Q Consensus 145 tKkhLsqRI~~vd~kl 160 (257)
++++|...|++++.++
T Consensus 48 t~~eL~~EI~~L~~eI 63 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEI 63 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 51
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=75.39 E-value=17 Score=24.84 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
++.-......-.+++..+++....++++..+-...+++++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555555444444444444333
No 52
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=75.17 E-value=21 Score=26.54 Aligned_cols=40 Identities=3% Similarity=0.187 Sum_probs=16.1
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
.++.|...+..++.++..|-+|+..=-.=|..|..+++..
T Consensus 30 ~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~ 69 (87)
T 1sfc_D 30 NLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSN 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444444444444444444433333333333333333
No 53
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=74.98 E-value=6.9 Score=29.17 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=35.1
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
..|.+||+.|..|+--|........+.|++-+. +|+.++.-+.-|-.|+..++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~-------~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARL-------TGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 457789998888888887777777777766644 445566666666777766654
No 54
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=74.97 E-value=9 Score=31.56 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=50.4
Q ss_pred CcchhHHHhhhhHHH------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025142 112 SFADLMYVTRKSMAT------AVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 112 s~sDlMfVTkr~ms~------Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~ 185 (257)
+..|.+....+.|.. ..+.+...|+.++..|..+-..|..-.++++--=+.. ..+.+.+..++.=--+.|
T Consensus 67 ~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL----~~ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEAL----DRVEARLSALSKLKNKYG 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH----HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH----HHHHHHHHHHHHHHHHcC
Confidence 456666666666664 2445666666666666666666666666654322211 122333333333334455
Q ss_pred hhHHHHHHHHHhhhhhhhhhhh
Q 025142 186 HNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.+++.|-..-..+..++..++.
T Consensus 143 ~~~eell~~~~~~~~eL~~l~~ 164 (175)
T 4abx_A 143 PTLEDVVEFGAQAAEELAGLEE 164 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 6666666666666666666554
No 55
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.19 E-value=26 Score=26.42 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=35.2
Q ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHhhHHhHHHHH-------------------HHHHHHHHHHHHhhhhHHHhh
Q 025142 128 VSNLNKHLESVTEALT---VAKKHLTQRIQNLNDKVEKQN-------------------EISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 128 v~sv~kqLeqVsesL~---~tKkhLsqRI~~vd~kld~~~-------------------eis~~i~~eV~~v~~d~~~i~ 185 (257)
...+.+.++++.+.|. .-+..+.++|+.+...+.... +....+++++.+++..+..+.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433 345555566666665554432 233444444444444444444
Q ss_pred hhHHHHHHHHHhhhhhh
Q 025142 186 HNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki 202 (257)
..+..+..-+..|+.++
T Consensus 85 ~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 85 DRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 56
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=74.11 E-value=2.9 Score=32.25 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
-+.+...++++++.+.++...=...|+.. |..++..|||..|+..++.-||..+
T Consensus 11 E~df~~l~~~i~~kl~~i~~~~geerk~~---i~~ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRLPPDEKKQM---VANVEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCTTTHHHH---HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35567778888888887664323344443 7778889999999999999888665
No 57
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=74.04 E-value=49 Score=29.64 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHhhhcCCCC---------CchHHHHHHHHHHHHHh
Q 025142 31 LPELLRELQSLVERLSKSGEQD---------NFTDAIKDQLNRLKFEC 69 (257)
Q Consensus 31 Lsd~~g~lq~~lk~~~k~gd~~---------~~~d~L~aQV~~L~~El 69 (257)
+...++.+...++.+.+ ||=+ +....|...++++...|
T Consensus 4 i~~pl~~l~~~~~~ia~-Gdlt~~~~~~~~~DEig~l~~~~n~~~~~l 50 (341)
T 3zx6_A 4 ITRPIIELSNTVDKIAE-GNLEAEVPHQNRADEIGILAKSIERLRRSL 50 (341)
T ss_dssp CHHHHHHHHHHHHHHHT-TBCSSCCTTTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCccccCCCCCccHHHHHHHHHHHHHHHH
Confidence 34456666777766653 3322 22344666666666666
No 58
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.96 E-value=29 Score=33.08 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=42.4
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh--------HHHHHHHHHHHHHHHHHhhhhHHHh
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK--------VEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k--------ld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
+.|++===.|++-.-+..+-+.|++|+.+-+.++. |.+-|+....+ .+...+-++.+.+++..+..-+.+.
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~-Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~ 103 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEY-LIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAH 103 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 44555444555555555555555555554444442 22222222111 2223333444445555554444444
Q ss_pred hhhHHHHHHHHHhhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~i 205 (257)
...+..++..+..++.||..+
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 104 ENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 555555555555555555544
No 59
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=73.16 E-value=15 Score=26.97 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=23.3
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHH
Q 025142 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
..|+.+++.=..++..|+.++++...+=..++.-+..+..
T Consensus 36 ~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 36 QRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666666666666666655554
No 60
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.19 E-value=34 Score=36.13 Aligned_cols=15 Identities=7% Similarity=0.335 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhh
Q 025142 121 RKSMATAVSNLNKHL 135 (257)
Q Consensus 121 kr~ms~Av~sv~kqL 135 (257)
+..|.+-+..+...|
T Consensus 923 ~~~LE~kl~eLq~rL 937 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKI 937 (1080)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 61
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=71.70 E-value=18 Score=27.34 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025142 169 DIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
..+.||..+|+.++....+++.+...-.
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666654333
No 62
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=71.28 E-value=25 Score=24.95 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=18.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 025142 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 127 Av~sv~kqLeqVsesL~~tKkhLsqRI~~v 156 (257)
.+...++++.+..+.|......|.++|+.|
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666
No 63
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=70.92 E-value=36 Score=32.59 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=59.8
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh--------HHhHHHHHHHHHHHHHHHHHhhhhHHHh
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNL--------NDKVEKQNEISKDIRKNVEEACDDLFKV 184 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~v--------d~kld~~~eis~~i~~eV~~v~~d~~~i 184 (257)
+.|+|.==.|+..+-+..+...|++++.+=+.|+..+.. |+.. .+..|-..+-++.+.+|+.....-+.+.
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~-ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKA-IQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHH-HHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 678888778888888888888888888777766544332 2211 1123445555555566666666666666
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
...|..++..+...+.||..++.
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~ 126 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKE 126 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655543
No 64
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=70.84 E-value=32 Score=33.72 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+|.|....-=+|..+.-..+..--.+|..||.-+.+++|.+..-....|..|...+.++.++..||..=
T Consensus 90 ~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 90 ETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444434444444444445555667788999999999888777777777777777777777777643
No 65
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=70.48 E-value=26 Score=24.84 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=23.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
.+|+++...+..+...|.+.+++|...++..
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888887777765
No 66
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.18 E-value=33 Score=26.01 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=31.3
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 152 RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.|+.|..|-..+.+=...++.....+.....+...+....+..+++|=+||+.
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333333333333333333344446667778888888888888888888764
No 67
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=69.17 E-value=56 Score=28.19 Aligned_cols=100 Identities=19% Similarity=0.159 Sum_probs=67.1
Q ss_pred hhhhHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH----HHHhhhhHHHhhhhHHHHH
Q 025142 120 TRKSMATAVSN---LNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN----VEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 120 Tkr~ms~Av~s---v~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e----V~~v~~d~~~i~~dv~~v~ 192 (257)
++..+.++.++ +-+-||.==+.....-++|.+++.++...+++.+.=-...+.+ ++.++.+++......+.++
T Consensus 29 le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 29 ARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555543 3333444445566667778888888888888776666666655 7777888888888888888
Q ss_pred HHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 193 SMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 193 ~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
.-++.||-+=|.+|.+-..+..-+-.+
T Consensus 109 ~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 109 KYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 888888877777776666665544433
No 68
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=68.60 E-value=28 Score=26.23 Aligned_cols=63 Identities=14% Similarity=0.253 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
|.+.+..+++|++.+..+=.+..+-....++++.+-+..-++...+++ ...+.|++||..+..
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk---~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG---RAAQLLDVSLFELSE 66 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHH
Confidence 344566666777666666555555555555555555555555544443 445667777777654
No 69
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=67.28 E-value=12 Score=25.72 Aligned_cols=36 Identities=11% Similarity=0.364 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHh
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDK 159 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~k 159 (257)
|.+.+..+-..+-.+-....++..+|.|||..+..+
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555556666678999999999988765
No 70
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.08 E-value=34 Score=24.99 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=48.2
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhH
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (257)
|..||+.+-...|...+=......++.+......+...++.+++..+..||.-++..+..=.-++.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666677777777777888899999999999999888877765444443
No 71
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=67.07 E-value=32 Score=25.66 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.-|+|..+++.-.+.+|..+-+.++.+..+..--+=-....++....+.....||.++.
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 45778888888888888888888888877655544445566677777777777777654
No 72
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=65.77 E-value=51 Score=26.48 Aligned_cols=93 Identities=15% Similarity=0.256 Sum_probs=56.5
Q ss_pred EeecCCcchhHHHhhhhHHHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 025142 107 WWKGLSFADLMYVTRKSMATAVSNLNKHLESV-----------TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE 175 (257)
Q Consensus 107 wWKGws~sDlMfVTkr~ms~Av~sv~kqLeqV-----------sesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~ 175 (257)
+.-+-|.-|=+|+-|....++++.+-.-..+- ++.+..++++|..-|+.+.+.|++..+...-+..+
T Consensus 19 ~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n-- 96 (130)
T 4dnd_A 19 YFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN-- 96 (130)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred eeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 34466677999999988888888776655542 12577888899999999999988887666654432
Q ss_pred HhhhhHHHhhh---hHHHHHHHHHhhhhhhhhhh
Q 025142 176 EACDDLFKVEH---NLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 176 ~v~~d~~~i~~---dv~~v~~~V~~Le~Ki~~ie 206 (257)
=++++= ++..=++.|..++.+|..|+
T Consensus 97 -----p~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 97 -----PGKFKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp -----HHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 233322 24444455555566655554
No 73
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=65.39 E-value=22 Score=26.66 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~ 162 (257)
|.+.+..+-..+-.+-....++..+|.|||.+|..++-.
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555555555555566678999999999988887654
No 74
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=65.28 E-value=28 Score=25.90 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=20.1
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHH
Q 025142 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMY 217 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 217 (257)
-.|+.+++.=..++..|+.++++...+=..+|.-+.
T Consensus 46 ~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~ 81 (87)
T 1sfc_D 46 LDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666655555555554443
No 75
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=65.11 E-value=36 Score=26.95 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
|.-|.=.||.|-++|+++.|.-.+++.+-.+-..+++........++.-+..|...|.
T Consensus 25 Ksal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 25 KTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555999999999999999999999888888888877777777777666666554
No 76
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=63.85 E-value=82 Score=28.19 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=7.0
Q ss_pred HHHHHHHHh-hhhc
Q 025142 61 QLNRLKFEC-QRAS 73 (257)
Q Consensus 61 QV~~L~~El-~La~ 73 (257)
-+++|...+ .++.
T Consensus 7 pl~~l~~~~~~ia~ 20 (341)
T 3zx6_A 7 PIIELSNTVDKIAE 20 (341)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 455566666 4543
No 77
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=63.09 E-value=37 Score=24.17 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~ 162 (257)
|++....|....++|.+.|+.|+..++.
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~ 37 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTK 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445544444443
No 78
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=62.46 E-value=33 Score=33.29 Aligned_cols=29 Identities=14% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRK 172 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~ 172 (257)
+|-..+|.+..+++.+..+. ++++++|..
T Consensus 74 ~ld~~~r~~~~~~~~l~~~r---n~~sk~i~~ 102 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEK---EAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 35556777777777666654 455555553
No 79
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.96 E-value=62 Score=26.21 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=29.1
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
+.|+.++..+.+.+.=....+.+..++...++....+++.++.-+..||.++.
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555556666666666666666677665
No 80
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=61.92 E-value=46 Score=24.62 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=23.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEI 166 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~ei 166 (257)
-+|++....|..+.++|.+.|+.|+..++.....
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566667777777777777777777777766554
No 81
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=61.66 E-value=21 Score=26.21 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=36.5
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+.++.|..++..++.++..|.+||.+=-.=+..+..+++.....+..--.|+..+-
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~ 74 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVS 74 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666667777777777766666666677777777666666666665554
No 82
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=61.65 E-value=21 Score=24.58 Aligned_cols=39 Identities=10% Similarity=0.315 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
.+-.+.|-.=|+|+.+.....-..+..|||.+..++|+.
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333444444566666666677777778888777777764
No 83
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.56 E-value=96 Score=36.91 Aligned_cols=62 Identities=6% Similarity=0.107 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHL---TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFK 183 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhL---sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~ 183 (257)
.=+.++++...+.|+...+.|++++..| ..+|+.+.++.++...=.+.+++++...+..+++
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777766666655443 3555555555555544445555555555444443
No 84
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.40 E-value=79 Score=27.22 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH-----------HHhhhhHHHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL-----------FKVEHNLKDLQ 192 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~-----------~~i~~dv~~v~ 192 (257)
+...+..+-.-|+.+.++=..-..+|..-|+....+.-+...-....+.++...+..+ +.+..++..++
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555544444444444444444444444444444444444433332 22344455555
Q ss_pred HHHHhhhhhhhhhhhhhhhHhHHHHHHHHHh
Q 025142 193 SMIYCLDGKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 193 ~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
.....|-.+|-.+|-..|--.+-....|.-+
T Consensus 102 ~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sl 132 (189)
T 2v71_A 102 AIKEQLHKYVRELEQANDDLERAKRATIMSL 132 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 5555555555555555555554444444433
No 85
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=60.53 E-value=42 Score=23.75 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=24.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
.+|+++...+..+..+|.+.++.|+..++..
T Consensus 12 ~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 12 EELRGVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888777765
No 86
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=60.37 E-value=83 Score=27.11 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=19.0
Q ss_pred CchHHHHHHHHHHHHHh-hhhcC
Q 025142 53 NFTDAIKDQLNRLKFEC-QRASS 74 (257)
Q Consensus 53 ~~~d~L~aQV~~L~~El-~La~s 74 (257)
.+-.+|+.+++.|.+|| .++.+
T Consensus 69 ~dr~ai~~E~~~l~~~i~~iaNt 91 (239)
T 3pwx_A 69 QDRSGMITELKSYRDSIESSFNA 91 (239)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 45688999999999999 88875
No 87
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.49 E-value=28 Score=26.17 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHh
Q 025142 55 TDAIKDQLNRLKFEC 69 (257)
Q Consensus 55 ~d~L~aQV~~L~~El 69 (257)
...|..|+..|..++
T Consensus 22 ~~~l~~q~~~l~~~~ 36 (117)
T 2zqm_A 22 LQLVVQQKQKVQLEL 36 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666777766666
No 88
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=59.23 E-value=75 Score=26.22 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH-------HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIR-------KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 138 VsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~-------~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
++..+..+-..|.....+|.+.+++...+++.++ +.+.+++..++....-...|..+=..|+..|.+
T Consensus 73 l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 73 LSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333344444444445555555554444444333 233444444444444444454444555555443
No 89
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.10 E-value=31 Score=24.08 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=5.9
Q ss_pred HHHHHHhhHHhHHH
Q 025142 149 LTQRIQNLNDKVEK 162 (257)
Q Consensus 149 LsqRI~~vd~kld~ 162 (257)
|+..++.|..|+|+
T Consensus 9 Lss~V~~L~~kVdq 22 (52)
T 1jcd_A 9 ASSDAQTANAKADQ 22 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 90
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=59.01 E-value=45 Score=29.74 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025142 163 QNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 163 ~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
..+++.+++.+|.+.+.++.-.+.|+.
T Consensus 207 l~~~~~~~~qq~e~f~~~~~p~~e~~~ 233 (273)
T 3s84_A 207 LAELGGHLDQQVEEFRRRVEPYGENFN 233 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 345567778888888888776666653
No 91
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=58.55 E-value=53 Score=24.32 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=25.8
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
..|..||..+...|++...=....+.++.-+.+-+.-=-+|+..+++
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq 63 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34666666666666666666666666655554444443344444433
No 92
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=58.46 E-value=24 Score=37.26 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=5.8
Q ss_pred hHHHHHHHHH
Q 025142 55 TDAIKDQLNR 64 (257)
Q Consensus 55 ~d~L~aQV~~ 64 (257)
...+..|+|-
T Consensus 697 ~~~V~~QLr~ 706 (1184)
T 1i84_S 697 AHLVLEQLRC 706 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4456667654
No 93
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=58.43 E-value=45 Score=24.93 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhHHH
Q 025142 189 KDLQSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
+.=..++..++.|+++...+-..+|.-+
T Consensus 54 d~Qn~~LD~i~~~~D~~~~rl~~~n~r~ 81 (87)
T 1l4a_D 54 GSQNRQVDRIQQKAESNESRIDEANKKA 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 94
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=58.27 E-value=22 Score=24.74 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=18.8
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHH
Q 025142 182 FKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 182 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
..|+.+++.=..++..|+.++++...+=..++.-+
T Consensus 26 ~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl 60 (65)
T 1gl2_D 26 QEIGNELDEQNEIIDDLANLVENTDEKLRTEARRV 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554444433
No 95
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=57.23 E-value=20 Score=24.21 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 025142 137 SVTEALTVAKKHLTQRIQNLNDKVEKQNEI 166 (257)
Q Consensus 137 qVsesL~~tKkhLsqRI~~vd~kld~~~ei 166 (257)
.+-+.+++-...|..||..+..|||...+.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888999999999999977553
No 96
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=57.17 E-value=50 Score=23.62 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=24.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~ 164 (257)
.+|+++...+..+...+.+.+.+|...++...
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~ 42 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAVID 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888887777777653
No 97
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=56.93 E-value=73 Score=26.10 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=52.7
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
.||+.+..+|.+...+.+.......++.+.+.-+..|+..-.......|.|+..++..=.....-+.-|
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457777777777777888777888888888888899999888888888888888887655544444443
No 98
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=56.82 E-value=92 Score=26.51 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=9.2
Q ss_pred hhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 179 DDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 179 ~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
.....+...++.+...+..|....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~ 123 (309)
T 2ch7_A 100 EVTRMISNSAKDVERVVESFQKGA 123 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444333333
No 99
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=56.81 E-value=73 Score=25.33 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEI 166 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~ei 166 (257)
|.|...++.+..-+|+.-+.+...++.-..-|..|.+.+++..+.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~ 50 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI 50 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555544333
No 100
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=55.84 E-value=44 Score=28.10 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhh
Q 025142 186 HNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
..++.+++-...|--.+..+|.+
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 101
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=55.50 E-value=12 Score=22.76 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHH
Q 025142 169 DIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
+.++||.++++.+..+.++++.+
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 56788888877777766666554
No 102
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=55.19 E-value=77 Score=25.15 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVE 175 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~ 175 (257)
+..|.++++.++.++++..++.+.++..+.
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 103
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=54.93 E-value=58 Score=23.62 Aligned_cols=68 Identities=9% Similarity=0.120 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHH------------HHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEK------------QNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~------------~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
|++....+.....+|.+.++.|+..++. ..+...+-.....++..-|..|..-++........-|.+.
T Consensus 12 l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~d~~~ 91 (101)
T 3fav_A 12 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRADEEQ 91 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555544432 3334444445555555555555555555555444444433
No 104
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=54.88 E-value=22 Score=27.52 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh-------hhhhhhhhhhhhhHhHHH
Q 025142 165 EISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL-------DGKIDSLADKQDITNIGM 216 (257)
Q Consensus 165 eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L-------e~Ki~~ie~kQd~tn~GV 216 (257)
..+++.-+++.+=+.++.+|..++..+++++..| +.-|++||+|-+.|..-|
T Consensus 7 ~~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v 65 (109)
T 3hd7_B 7 SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 65 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 105
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=54.41 E-value=67 Score=24.23 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
++.+|..++.+.+..++.+|.+ |+.|-.+.-+ .+..-+.++...++.|-..+..+=.|+
T Consensus 13 sFN~A~~~i~~g~~tts~AL~k--------iQdVVN~q~~-------------aL~~L~~qL~~NFgAISssi~dIy~RL 71 (77)
T 2bez_C 13 QFNKAISQIQESLTTTSTALGK--------LQDVVNQNAQ-------------ALNTLVKQLSSNFGAISSVLNDILSRL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH-------------HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4566777777777777777654 3333332211 111123344555555555555566666
Q ss_pred hhhhh
Q 025142 203 DSLAD 207 (257)
Q Consensus 203 ~~ie~ 207 (257)
+.+|+
T Consensus 72 d~leA 76 (77)
T 2bez_C 72 DKVEA 76 (77)
T ss_dssp HHHHH
T ss_pred Hhhhc
Confidence 66664
No 106
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=54.01 E-value=51 Score=22.68 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHhh
Q 025142 164 NEISKDIRKNVEEACDDLFKVE 185 (257)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~ 185 (257)
..++.+++.-++.++.-.+.+.
T Consensus 65 ~~~shel~tpl~~i~~~~e~l~ 86 (114)
T 3zcc_A 65 AGVSHDLRTPLTRIRLATEMMS 86 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHhhHHHcChHHHHHHHHHHHH
Confidence 3444445555555554444433
No 107
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.90 E-value=46 Score=24.76 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=21.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHH
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV 174 (257)
.++|++ +.++.++|..--.+|.+ ||+.++..|++-.+..+..+.++
T Consensus 15 ~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 15 IEGRGS-LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554 66666666655544443 45555555555544444443333
No 108
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=53.82 E-value=76 Score=24.63 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhH-HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLN-DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd-~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
+...+++|++.-+.|+..=..|..+.++|+ +.=++........++-+..++.-.+.....|.-++..++-||.
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 456788999999999999999999999998 3334444555555555655666666667777777777666664
No 109
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=52.54 E-value=58 Score=22.90 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025142 169 DIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
+.+..+..+..-|..|...+.......+.-|.+
T Consensus 57 ~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~d~~ 89 (97)
T 2vs0_A 57 QLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQQ 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555554444444443
No 110
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=51.88 E-value=57 Score=30.62 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (257)
+-..+|.+..+++.+..+ .++++++|.
T Consensus 33 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~ 59 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTE---RNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 445667777776666554 445566665
No 111
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=51.86 E-value=73 Score=23.85 Aligned_cols=23 Identities=4% Similarity=0.160 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 025142 134 HLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~v 156 (257)
.|.++.+.+.++|.-+..-||.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kv 28 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKV 28 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444544444444444
No 112
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=51.72 E-value=1.6e+02 Score=27.88 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=5.2
Q ss_pred cccccCCCCCcc
Q 025142 241 YFLYDSNEIPSV 252 (257)
Q Consensus 241 ~~~~~~~e~~~~ 252 (257)
|.++|....+|+
T Consensus 167 Y~I~p~~~~~pf 178 (409)
T 1m1j_C 167 YFIKPQKAKQSF 178 (409)
T ss_dssp EEECCTTCSSCE
T ss_pred EEEecCCCCCcE
Confidence 344454434444
No 113
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=51.58 E-value=47 Score=26.43 Aligned_cols=10 Identities=40% Similarity=0.465 Sum_probs=5.6
Q ss_pred EeecCCcchh
Q 025142 107 WWKGLSFADL 116 (257)
Q Consensus 107 wWKGws~sDl 116 (257)
.--|+|+.++
T Consensus 56 r~~G~sL~eI 65 (142)
T 3gp4_A 56 RRAGLSIEAL 65 (142)
T ss_dssp HHTTCCHHHH
T ss_pred HHcCCCHHHH
Confidence 3446666665
No 114
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=51.45 E-value=43 Score=23.33 Aligned_cols=13 Identities=8% Similarity=0.251 Sum_probs=6.1
Q ss_pred HHHhhHHhHHHHH
Q 025142 152 RIQNLNDKVEKQN 164 (257)
Q Consensus 152 RI~~vd~kld~~~ 164 (257)
+|+.|..++++..
T Consensus 5 ki~~Lss~V~~L~ 17 (52)
T 1jcd_A 5 KADQASSDAQTAN 17 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 115
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.41 E-value=43 Score=32.53 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
|-..+|.+..+++.+..+.+ +++++|..- ..-.+|.+.+..++..+..-+..||.++..++.+
T Consensus 38 ld~~~r~~~~~~~~l~~~rn---~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLN---SVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777666544 455555331 1122334444444555555555555555554443
No 116
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=51.38 E-value=44 Score=26.31 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=14.4
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 176 EACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
++...+..-..||..++..|..| +|.
T Consensus 67 DlE~kv~kq~yEI~eL~~rV~dl-gKf 92 (106)
T 1j1d_B 67 DLQEKFKQQKYEINVLRNRINDN-QKV 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred hHHHHHHhhhHHHHHHHHHHHHh-cCc
Confidence 33344444567777777777777 554
No 117
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=50.06 E-value=1.5e+02 Score=27.04 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhH----HHhhhhHHHHHHHHHh
Q 025142 145 AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDL----FKVEHNLKDLQSMIYC 197 (257)
Q Consensus 145 tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~----~~i~~dv~~v~~~V~~ 197 (257)
.|..|...|+.|-..+.+.++-++.+.+++..-+..+ ..++.+...++..+.+
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~ 173 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKN 173 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhc
Confidence 3455555665555555544444444444444333332 2344444444444433
No 118
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=49.49 E-value=63 Score=24.25 Aligned_cols=53 Identities=11% Similarity=0.279 Sum_probs=22.9
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 150 TQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
.+|++++...++......-.+..++..++.++. .++-.++.+...|..+...|
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~-------~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDID-------SLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHH
Confidence 445555544333333333334444444444444 44444444445555444444
No 119
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=49.49 E-value=47 Score=24.55 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHhhHHHH
Q 025142 121 RKSMATAVSNLNKHLESVT 139 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVs 139 (257)
++...+|...+.+..+.+.
T Consensus 60 ~~~~~e~~~~L~~~~e~i~ 78 (107)
T 1fxk_A 60 RVAKDELTEELQEKLETLQ 78 (107)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 4566676666666555544
No 120
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=49.25 E-value=63 Score=22.41 Aligned_cols=41 Identities=15% Similarity=0.066 Sum_probs=22.2
Q ss_pred HhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHH
Q 025142 176 EACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGM 216 (257)
Q Consensus 176 ~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 216 (257)
.++.=-..||.+++.=..++..|+.++++...+=..+|.-+
T Consensus 21 ~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl 61 (66)
T 1n7s_D 21 NLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333344566666666666666666666555555555444
No 121
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.20 E-value=47 Score=31.63 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
|-..+|.+..+++.+..+. ++++++|..- ..-.+|.+.+...+..+..-+..||.++..++.+
T Consensus 36 l~~~~r~~~~~~~~l~~~~---n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHER---NKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777666554 4555555531 1112333344444444444444445444444433
No 122
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=49.03 E-value=89 Score=26.97 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=16.5
Q ss_pred Hhhhhhhhhh---hhhhhhHhHHHHHHHHHh
Q 025142 196 YCLDGKIDSL---ADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 196 ~~Le~Ki~~i---e~kQd~tn~GV~~Lc~f~ 223 (257)
..+...+.+| ..-||.|-+-|....+.+
T Consensus 126 ~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv 156 (214)
T 1kmi_Z 126 SFTNAQLLKIMMAQDFQDLTGQVIKRMMDVI 156 (214)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4444444444 367888887766655544
No 123
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=48.73 E-value=85 Score=23.72 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
+.++-...+..--..|+.||..+...+|...+-....+..+.+.....+.-..++.++++.+.-||
T Consensus 34 ~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 34 QAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333334444444555555555555555555555555555554445555556666655555544
No 124
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=48.40 E-value=20 Score=30.57 Aligned_cols=33 Identities=6% Similarity=-0.055 Sum_probs=18.7
Q ss_pred hhhhhhhhhhHhHHHHHHHHHhhcccCCcccch
Q 025142 202 IDSLADKQDITNIGMYLLCNFVDGKKGRTTESM 234 (257)
Q Consensus 202 i~~ie~kQd~tn~GV~~Lc~f~~~~~~~~~~~~ 234 (257)
|-.+-+.......-||+|.+.+....-.+..++
T Consensus 117 ll~l~Aed~AieDaIy~L~~al~~g~I~ld~yl 149 (174)
T 2p22_A 117 LYNLVAQDYALTDTIECLSRMLHRGTIPLDTFV 149 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 333444455566778889888764333333343
No 125
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=48.38 E-value=70 Score=22.63 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=10.5
Q ss_pred HHHHHhhhhhhhhhh
Q 025142 192 QSMIYCLDGKIDSLA 206 (257)
Q Consensus 192 ~~~V~~Le~Ki~~ie 206 (257)
++.+..||.|+.+.+
T Consensus 47 ~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 47 RERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777776554
No 126
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.92 E-value=98 Score=24.20 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDI 211 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 211 (257)
..-|.+|.-.|+++-.-+|+.+.=-+.=...=..+..|+..++.|++...-.=-.||.|+.++..-=+|
T Consensus 33 ~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 33 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566555555544321111111123445566677777777777777788888887654444
No 127
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=47.05 E-value=1.3e+02 Score=25.48 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHH-------HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 137 SVTEALTVAKKHLTQRIQNLNDKVEKQ-------NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 137 qVsesL~~tKkhLsqRI~~vd~kld~~-------~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
.....|...|..|.+-+..|...|++= .+++...+..+..++.++++...-...+..-...|-.||..+|.
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666665543 34444555556666666666666666666666667777776664
No 128
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=46.70 E-value=2.6 Score=31.87 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=10.2
Q ss_pred hheeccccceeee
Q 025142 13 LMLAGLGYTGTIL 25 (257)
Q Consensus 13 ~iLvGAG~~GSvl 25 (257)
+++||||++|..+
T Consensus 5 V~IIGaGpaGL~a 17 (336)
T 3kkj_A 5 IAIIGTGIAGLSA 17 (336)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 5789999988644
No 129
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=46.59 E-value=64 Score=24.57 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 184 VEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
-..||..=+..|..|+.+|..|..
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777776654
No 130
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=45.93 E-value=1.2e+02 Score=29.51 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=29.2
Q ss_pred cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 025142 113 FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKK 147 (257)
Q Consensus 113 ~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKk 147 (257)
+.|+|.==.++..+-+..|-..|++++.+=+.|+.
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~ 116 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQ 116 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHH
Confidence 78999988999999999999999998777666643
No 131
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.79 E-value=1.1e+02 Score=36.59 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=10.2
Q ss_pred CCCchhHHHHHHHHHHHh
Q 025142 28 DGKLPELLRELQSLVERL 45 (257)
Q Consensus 28 ~GkLsd~~g~lq~~lk~~ 45 (257)
+=.+.|+-.+|+.++++.
T Consensus 1682 ~Y~~~~f~eDLk~l~~~a 1699 (3245)
T 3vkg_A 1682 NYKSSDFDDDLRMLLKRA 1699 (3245)
T ss_dssp -CCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 334666666666666543
No 132
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=45.24 E-value=1.7e+02 Score=26.23 Aligned_cols=77 Identities=18% Similarity=0.331 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
+...|.+-.++|...||-+ .--|.-.+.-|..+|.|+++.+.+.+.+-+.+..+..|=.....|+..| +
T Consensus 150 Sl~~Lkk~~~~i~~~LelL----~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V-------~ 218 (242)
T 3uux_B 150 SPSALKSFSQTLVNSLEFL----NIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQI-------D 218 (242)
T ss_dssp CSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred cHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------H
Confidence 3456777788888888753 4455566678999999999999999999999988887777777777666 5
Q ss_pred hhhhhhhh
Q 025142 200 GKIDSLAD 207 (257)
Q Consensus 200 ~Ki~~ie~ 207 (257)
.||+-+++
T Consensus 219 ~Rief~qE 226 (242)
T 3uux_B 219 DRLDFLEE 226 (242)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55554443
No 133
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=45.17 E-value=1e+02 Score=23.54 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=37.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
.+++-++...+-..|+.++.++...++.....+ .....++..++.|+..--.|-+.+-.+=..||..|.
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i-------~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKDNSRRML-------TDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666665555555444444 344666666666667666666666555555665443
No 134
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.08 E-value=92 Score=23.08 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
+...+-.+|+.+..++...++.... .......++..++.|+.+.-.|-+.+-.+=..||..|.
T Consensus 11 q~~~Le~~l~e~E~~~~~~l~~~q~-------~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 11 QLAAKEAKLRDLEDSLARERDTSRR-------LLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3334445555555554444444333 34444667777777777777676666665556665543
No 135
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=45.03 E-value=76 Score=23.66 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHhhHHH
Q 025142 121 RKSMATAVSNLNKHLESV 138 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqV 138 (257)
++...+|...+.+..+.+
T Consensus 65 ~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 65 KTTKDKAVAELKEKIETL 82 (117)
T ss_dssp EECHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHH
Confidence 345555555555444443
No 136
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=45.00 E-value=23 Score=27.31 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
..|..||+.|..|++++..-....++.|.+---+..+..-|++
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDID 45 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 45 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3567788888888777766665555555443344455555544
No 137
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=44.98 E-value=24 Score=31.28 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=49.3
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEA-------LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVses-------L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (257)
+-++|-..|...++..|..+.+. +...=.++.+||++|++++|+...=.-.-..|+-.+ +..+.--..++
T Consensus 36 AD~kSTQ~AId~It~KlN~liek~N~qf~~i~~EF~e~e~rI~~l~~~vdD~~~DvwsyNaELLVlleNq~Tld~~Ds~v 115 (222)
T 2wrg_I 36 ADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNV 115 (222)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCCCSCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHhccchhhhHHHHH
Confidence 45688899999999999888653 444456788999999999988743222222332222 23333344555
Q ss_pred HHHHHHHH
Q 025142 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
.++++.|+
T Consensus 116 ~~L~ekvr 123 (222)
T 2wrg_I 116 RNLYEKVK 123 (222)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 138
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=44.75 E-value=2.2e+02 Score=27.25 Aligned_cols=86 Identities=14% Similarity=0.192 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh------------------HHHhhhhHHHHHHHHHhhh
Q 025142 138 VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD------------------LFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 138 VsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d------------------~~~i~~dv~~v~~~V~~Le 199 (257)
+.+.|....+-....|+.|...|++....+..+.+-|..++.- .+.+-+++..+...+...+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5566777777777777778888887777777777777666653 2235556666666676667
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHh
Q 025142 200 GKIDSLADKQDITNIGMYLLCNFV 223 (257)
Q Consensus 200 ~Ki~~ie~kQd~tn~GV~~Lc~f~ 223 (257)
..|..++..-+.-+.-|..|-+-+
T Consensus 105 ~~i~~l~~~~~~~~~~i~~L~~~v 128 (411)
T 3ghg_C 105 SSIRYLQEIYNSNNQKIVNLKEKV 128 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766555566666664444
No 139
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Probab=44.48 E-value=8.6 Score=33.99 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=49.9
Q ss_pred HhhhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 025142 119 VTRKSMATAVSNLNKHLESVTE-------ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVse-------sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (257)
+-++|-..|...+++.|..+.+ ++...=.+|.+||++|++|+|+...=.-.-..|+-.+ +..+.--..++
T Consensus 36 AD~kSTQ~AId~It~KlN~~iekmN~qfe~v~~ef~~~e~ri~~l~~~vdD~~~DvwsyNaELLVlleNq~Tld~hDsnv 115 (221)
T 1mqm_B 36 ADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLADSEM 115 (221)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCEECSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHhccchhhHHHHHH
Confidence 4568889999999999988843 4555566788999999999998743222222332222 23333344555
Q ss_pred HHHHHHHH
Q 025142 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
.++.+.|+
T Consensus 116 ~nL~ekvr 123 (221)
T 1mqm_B 116 NKLFEKTR 123 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555553
No 140
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.21 E-value=1e+02 Score=23.42 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 139 TEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 139 sesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
......--..|+.||+.+...+|...+--...++.+.+.....+.--.++.++++.+.-||
T Consensus 39 ~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 39 SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333344555555555555554444444444444443333444445555544444443
No 141
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=43.52 E-value=44 Score=30.84 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHhhhhhhh
Q 025142 186 HNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 186 ~dv~~v~~~V~~Le~Ki~ 203 (257)
..|+.+++.|..|+.++.
T Consensus 40 ~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444444444444443
No 142
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=43.41 E-value=1.2e+02 Score=24.07 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 135 LESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 135 LeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
.+++...++.+++.|+.=.+--++=.+..++-.+..+.+|.++.+-+..-...+..++..+...
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333444556666677777777777777777777776666544
No 143
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=43.37 E-value=1.1e+02 Score=23.32 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=5.6
Q ss_pred hhhhHHHHHHH
Q 025142 120 TRKSMATAVSN 130 (257)
Q Consensus 120 Tkr~ms~Av~s 130 (257)
++++|..|..+
T Consensus 11 ~~leLQSALea 21 (81)
T 1wt6_A 11 TLRELQEALEE 21 (81)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 144
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Probab=42.76 E-value=34 Score=29.25 Aligned_cols=46 Identities=13% Similarity=0.339 Sum_probs=36.7
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL-------~~tKkhLsqRI~~vd~kld~~~ 164 (257)
+-++|-.+|+..++..|..+.+.. ...=.++.+||.+|..++|+..
T Consensus 36 ad~~sTQ~aid~It~K~N~~iekmn~qf~~i~~ef~e~e~ri~~l~~~vdD~~ 88 (176)
T 1jsd_B 36 ADSDSTQKAIDKITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDDQI 88 (176)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999998887542 3334578899999999999875
No 145
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.65 E-value=59 Score=30.39 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=5.6
Q ss_pred HHHHHHHHhhhhh
Q 025142 189 KDLQSMIYCLDGK 201 (257)
Q Consensus 189 ~~v~~~V~~Le~K 201 (257)
+.+|..+..|.++
T Consensus 48 r~l~n~~~elkgn 60 (403)
T 4etp_A 48 RTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCC
Confidence 3344444444443
No 146
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=42.50 E-value=1.1e+02 Score=27.33 Aligned_cols=55 Identities=11% Similarity=0.262 Sum_probs=43.7
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
++.=+.++-...+-.....-.++....|+....-++..++..|.+.|.+|+.|+.
T Consensus 93 l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 93 VDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 3444445555555666667788999999999999999999999999999999874
No 147
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.46 E-value=69 Score=23.57 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHh
Q 025142 55 TDAIKDQLNRLKFEC 69 (257)
Q Consensus 55 ~d~L~aQV~~L~~El 69 (257)
...+..|+..|..|+
T Consensus 17 ~~~l~~q~~~l~~~~ 31 (107)
T 1fxk_A 17 AQAISVQKQTVEMQI 31 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666666555
No 148
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=42.38 E-value=1.1e+02 Score=23.40 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=40.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.+|.++++++...|=+|..-|+.=..|.++ ..++.++++.+-..-+++ ||.++.+|
T Consensus 33 ~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~-----------L~~mn~Kls~a~rlYD~l------LE~~l~~~ 88 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARLNYALNDKAQKYNT-----------LIEMNGKISEIMNIYDRL------LEQQLQSI 88 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------HHHHHHhc
Confidence 578899999999999998888877777554 455555556655555555 67777654
No 149
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=42.34 E-value=16 Score=31.33 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=36.3
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHhhHHhHHHHH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEA-------LTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVses-------L~~tKkhLsqRI~~vd~kld~~~ 164 (257)
+-+++-.+|+..++..|..+.+. +...=.++.+||.+|++++|+..
T Consensus 36 ad~ksTQ~aId~It~K~N~~iek~n~qfe~i~~ef~~~e~rI~~l~~~vdD~~ 88 (176)
T 2rft_B 36 ADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLR 88 (176)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCCCCCCCCCSSCCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999998887532 33344488999999999999875
No 150
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=42.28 E-value=1.4e+02 Score=24.93 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=19.2
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 181 LFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
+.++...++.|-..+..+=.|++.+|+.+.
T Consensus 63 ~~qL~~nFgAISssi~dIy~rLd~leAdaQ 92 (149)
T 1wyy_A 63 VKQLSSNFGAISSVLNDILSRLDKVEAEVQ 92 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666667777777776654
No 151
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=42.17 E-value=68 Score=23.90 Aligned_cols=58 Identities=7% Similarity=0.184 Sum_probs=31.0
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
++.-+-++.|...+..++.++..|.+|+..=-.=|.+|..+++.+...+..--.|+..
T Consensus 26 ~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555556666666666555555555555555555555444444443
No 152
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=41.87 E-value=60 Score=22.35 Aligned_cols=10 Identities=30% Similarity=0.704 Sum_probs=4.3
Q ss_pred HHHHHHhhHH
Q 025142 149 LTQRIQNLND 158 (257)
Q Consensus 149 LsqRI~~vd~ 158 (257)
+++|++.++.
T Consensus 35 vt~rle~lEn 44 (47)
T 1aq5_A 35 VAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 153
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=41.80 E-value=80 Score=21.48 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=5.8
Q ss_pred HHHHHHHHh-hhh
Q 025142 61 QLNRLKFEC-QRA 72 (257)
Q Consensus 61 QV~~L~~El-~La 72 (257)
.+++|.+.+ .++
T Consensus 10 pl~~l~~~~~~i~ 22 (115)
T 3zrx_A 10 PIIELSNTFDKIA 22 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 344555555 444
No 154
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=41.31 E-value=77 Score=22.10 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHH
Q 025142 158 DKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIY 196 (257)
Q Consensus 158 ~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~ 196 (257)
.++...++-.+.|-+.|.++...++.+.-=++.+|.-+.
T Consensus 4 ~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 4 GEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566677788887777887777777776654
No 155
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=40.83 E-value=49 Score=26.80 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=24.4
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
.|..||+.|..|+++|..-....++.|.+=--+..+..-|++
T Consensus 26 dLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDID 67 (119)
T 1lwu_A 26 ELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDID 67 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 466778877777777766555555554333333355555543
No 156
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=40.78 E-value=56 Score=27.59 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 025142 188 LKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 188 v~~v~~~V~~Le~Ki~~i 205 (257)
+++.+..+..|+.|+.++
T Consensus 71 ~~sA~~~~d~lekKl~~a 88 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQA 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 333334444444443333
No 157
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=40.74 E-value=17 Score=30.54 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=15.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025142 127 AVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 127 Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd 157 (257)
|.+.+.+||.+--.+|++.-..+-+|+|.+.
T Consensus 58 aL~~l~~qL~~nFgAISssi~dIy~rLd~le 88 (149)
T 1wyy_A 58 ALNTLVKQLSSNFGAISSVLNDILSRLDKVE 88 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555443
No 158
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.71 E-value=56 Score=30.69 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 142 LTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 142 L~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
|-..+|.+..+++.+..+ .++++++|..- ..-.+|.+.+...+..+..-+..||.++..++.+-
T Consensus 35 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSE---RNKLSKEIGKL-KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHTTGG-GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777766555 44556666531 01123444555555556555555666666555443
No 159
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=40.53 E-value=2e+02 Score=25.60 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH------HHHHhh
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ------SMIYCL 198 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~------~~V~~L 198 (257)
.++++.|+..|-.+...+.++-.++.++++..-..|-.. ..+.+.|...|+.=..+.++|..+. ..+..|
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~L 136 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSI----RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVL 136 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 467888888888888888888888888777655555433 2333445566666566666666665 355677
Q ss_pred hhhhhhhhhhhhhH
Q 025142 199 DGKIDSLADKQDIT 212 (257)
Q Consensus 199 e~Ki~~ie~kQd~t 212 (257)
|..|.+.|.....+
T Consensus 137 eqELvraEae~lva 150 (234)
T 3plt_A 137 EQELVRAEAESLVA 150 (234)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHH
Confidence 77776666554444
No 160
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=40.34 E-value=49 Score=22.73 Aligned_cols=37 Identities=14% Similarity=0.426 Sum_probs=20.8
Q ss_pred HHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHhhHHhH
Q 025142 124 MATAVSNLNK----HLESVTEALTVAKKHLTQRIQNLNDKV 160 (257)
Q Consensus 124 ms~Av~sv~k----qLeqVsesL~~tKkhLsqRI~~vd~kl 160 (257)
|..+|.++=. +.+.+|+.|-.--.+.+.|||.|+..+
T Consensus 7 Lt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 7 LTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 4444444433 344566666666777777777776654
No 161
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=40.20 E-value=19 Score=21.55 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALT 143 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~ 143 (257)
|+|-+++++..|+.++.+|-++|.
T Consensus 2 ~q~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999998888877663
No 162
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.00 E-value=98 Score=30.00 Aligned_cols=22 Identities=0% Similarity=-0.145 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhHHhHHH
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~ 162 (257)
+|-..+|.+..+++.+..+.++
T Consensus 41 ~ld~~~r~~~~~~~~l~~~rN~ 62 (484)
T 3lss_A 41 EADKKWRRTQFLTEASKKLINI 62 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777665543
No 163
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=39.78 E-value=96 Score=27.66 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQN 164 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~ 164 (257)
|..+|+.+...+..+......+.++|..+|++ .+|....
T Consensus 132 L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~--~~L~~Ll 170 (261)
T 3rkg_A 132 FINVMSALETDFKLHSQICIQILNDLENEVNR--LKLRHLL 170 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHH
Confidence 55677777777777887777888888876654 4555443
No 164
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=39.73 E-value=25 Score=30.11 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=49.7
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhh
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTV-------AKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHN 187 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~-------tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~d 187 (257)
=+.++|-..|...++..|..|.+.... .=.++.+||.+|++|+|+...-.=.-..|+-.+ +..+..-.+.
T Consensus 35 AAD~kSTQ~AId~It~KvN~iiekmn~qf~~v~~ef~~~e~ri~~l~~kvdD~~~DvwsYnAELLVllENq~TlD~hDsn 114 (174)
T 3ku3_B 35 AADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSN 114 (174)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHhcccccchhhHH
Confidence 367999999999999999888764322 224678999999999998754333333343322 2333333445
Q ss_pred HHHHHHHH
Q 025142 188 LKDLQSMI 195 (257)
Q Consensus 188 v~~v~~~V 195 (257)
|.++.+.|
T Consensus 115 v~nLyekv 122 (174)
T 3ku3_B 115 VKNLYDKV 122 (174)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 165
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=39.22 E-value=52 Score=25.10 Aligned_cols=29 Identities=7% Similarity=0.311 Sum_probs=24.3
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKH 148 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkh 148 (257)
++.-+.+.|..+.-.|+.+.+++..+++.
T Consensus 37 ~~~El~~~l~el~e~l~DL~~SI~i~e~~ 65 (95)
T 2c5k_T 37 QEEEIQDILKDVEETIVDLDRSIIVMKRD 65 (95)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78888999999999999999998885544
No 166
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=38.79 E-value=63 Score=24.39 Aligned_cols=19 Identities=5% Similarity=0.242 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 025142 125 ATAVSNLNKHLESVTEALT 143 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~ 143 (257)
+++...++.-|.++.+.+.
T Consensus 22 ~~g~~tts~AL~kiQdVVN 40 (77)
T 2bez_C 22 QESLTTTSTALGKLQDVVN 40 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 167
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=38.65 E-value=1.9e+02 Score=28.40 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=52.7
Q ss_pred chhHHHhhh--hHHHHHHHHHHhhHHHHHHHHHHHH-----------------------------HHHHHHHhhHHhHHH
Q 025142 114 ADLMYVTRK--SMATAVSNLNKHLESVTEALTVAKK-----------------------------HLTQRIQNLNDKVEK 162 (257)
Q Consensus 114 sDlMfVTkr--~ms~Av~sv~kqLeqVsesL~~tKk-----------------------------hLsqRI~~vd~kld~ 162 (257)
.|-+|+.-| ++.++...+.+.+++..+.....++ ++.++-..++..+.=
T Consensus 329 ~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~i 408 (671)
T 1mqs_A 329 NDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNI 408 (671)
T ss_dssp SCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 799999888 7889999999999988887654332 566777778888888
Q ss_pred HHHHHHHHHH----HHHHhhhhH
Q 025142 163 QNEISKDIRK----NVEEACDDL 181 (257)
Q Consensus 163 ~~eis~~i~~----eV~~v~~d~ 181 (257)
..+|.+.+++ ++.++..++
T Consensus 409 a~~l~~~i~~~~l~~~~e~EQ~l 431 (671)
T 1mqs_A 409 FAALLSQLESKSLDTFFEVEQDP 431 (671)
T ss_dssp HHHHHHHHHTTTCHHHHHHTSCC
T ss_pred HHHHHHHHhHhhHHHHHHHHHHH
Confidence 8888888874 567776666
No 168
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=38.41 E-value=78 Score=29.78 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
.|+..-++|.+|++.++.+..++++..+..++++ -+-...-..+|..+..|.+.|
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l-------~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL-------FQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCE
Confidence 3444445555555555555555544444444443 333344455666776666655
No 169
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} PDB: 3m5h_B* 3m5i_B* 3m5j_B* 4dj6_B* 4dj7_B* 4dj8_B* 4fqv_B 1ti8_B*
Probab=38.17 E-value=13 Score=31.99 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=50.0
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh---hhHHHhhhh
Q 025142 118 YVTRKSMATAVSNLNKHLESVTE-------ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC---DDLFKVEHN 187 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVse-------sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~---~d~~~i~~d 187 (257)
=+.++|-..|...++..|-.+.+ ++...=.++.+||.+|++|+|++..=.=.-..|+-.+- ..+..-...
T Consensus 35 AAD~kSTQ~AId~IT~KvN~iIeKmN~qf~~i~~Ef~eve~ri~~l~~kvdD~~~DiWsYnaELLVlLENq~TlD~hDsn 114 (182)
T 3m5g_B 35 AADYKSTQSAIDQITGKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINWTRDAMTEIWSYNAELLVAMENQHTIDLADSE 114 (182)
T ss_dssp EECHHHHHHHHHHHHHHHHHHSSCCCEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHhcccccchhhHH
Confidence 36899999999999999888764 33334456789999999999987544444444433332 233333344
Q ss_pred HHHHHHHH
Q 025142 188 LKDLQSMI 195 (257)
Q Consensus 188 v~~v~~~V 195 (257)
|.++.+.|
T Consensus 115 v~nLyekv 122 (182)
T 3m5g_B 115 MSKLYERV 122 (182)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 170
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=38.12 E-value=59 Score=28.15 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhh
Q 025142 160 VEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVD 224 (257)
Q Consensus 160 ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~ 224 (257)
++-.-+|++.|++-+.+-.-|-++|..-=.+|++.|..+-.++.. ...+...-.-++.+|+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ir~~I~~~re~L~~-gysE~~~~~ilFAlcAlID 70 (185)
T 4ack_A 7 IEIILDIIKTTREIIEDNDNDNEKISYHRNNIRKSIFFLQEELLE-KYSETVCKYIVFPLLAYVD 70 (185)
T ss_dssp HHHHHHHHHHHHHHTC---CCTTHHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 344567888888888888888888888888888888888877777 7777777888899999985
No 171
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=37.90 E-value=1.1e+02 Score=21.72 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.+..+..=.+++.....++..++..+..|+..|+++.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555556667778888889999999999888763
No 172
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=37.85 E-value=92 Score=23.48 Aligned_cols=16 Identities=13% Similarity=0.432 Sum_probs=6.5
Q ss_pred HHHHHHhhHHHHHHHH
Q 025142 128 VSNLNKHLESVTEALT 143 (257)
Q Consensus 128 v~sv~kqLeqVsesL~ 143 (257)
|..+-..|+.+...+.
T Consensus 14 v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 173
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=37.49 E-value=2.6e+02 Score=26.04 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=28.2
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKV 160 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kl 160 (257)
+.|..+-..-..++.++.++++.|...++.+.++|+.--+++
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~i 105 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQI 105 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777776665443333
No 174
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=37.46 E-value=1.3e+02 Score=24.37 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH-----HH--H----HH------HHHhhhhHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISK-----DI--R----KN------VEEACDDLF 182 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~-----~i--~----~e------V~~v~~d~~ 182 (257)
.|+.+..-+..+.++++...+++..--..+.++|...|+++|+...-.. .+ + .+ +..+-.|++
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~I~~~~~~lla~~~p~a~dlr~i~~~l~i~~dlE 91 (216)
T 2i0m_A 12 LEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARLLALQQPQVSDLRFVISIMSSCSDLE 91 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 3556666666667777777777765555677777777776665533211 11 0 11 233446777
Q ss_pred HhhhhHHHHHHHHHhhh
Q 025142 183 KVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le 199 (257)
+||+-..+|-..+..+.
T Consensus 92 RIgD~a~~Ia~~~~~~~ 108 (216)
T 2i0m_A 92 RMGDHMAGIAKAVLQLK 108 (216)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777666665543
No 175
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=37.44 E-value=1.7e+02 Score=24.09 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=47.7
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH-----HHH------HH------HHHhhhhHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISK-----DIR------KN------VEEACDDLF 182 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~-----~i~------~e------V~~v~~d~~ 182 (257)
.++.+..-+..+.++|+...++|..-...+.++|...|+++|....-.. .+. .+ +..+-.|++
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlE 91 (235)
T 1sum_B 12 FKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIE 91 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 3555666666667777777777766556677777777777665543221 110 11 123446777
Q ss_pred HhhhhHHHHHHHHHhhhh
Q 025142 183 KVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le~ 200 (257)
+||+-..+|-..+..+..
T Consensus 92 RIgD~a~~Ia~~~~~~~~ 109 (235)
T 1sum_B 92 NIADKCHDIAKNVLELME 109 (235)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 777777766666555443
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=37.30 E-value=1.9e+02 Score=28.50 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 184 VEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+....+.++....+.-.++..++.
T Consensus 660 ~~~~~~~l~~~~~~~~~~~~~~~~ 683 (695)
T 2j69_A 660 RESEFNRLKNLQEDVIAQLQKIEA 683 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444444444444444445554443
No 177
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=37.28 E-value=1.5e+02 Score=23.42 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=47.8
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHH----HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHH
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRK----NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYL 218 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~----eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 218 (257)
+.|..+..++.-..|+.+.=-++-+. .++.++.++++....-+.++.-++.||-+=|.+|-....|..-+-.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 44555555555555544443333333 3677788888888888888888888888888888777777665543
No 178
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=37.25 E-value=78 Score=25.82 Aligned_cols=12 Identities=0% Similarity=-0.028 Sum_probs=4.7
Q ss_pred hhhhHHHHHHHH
Q 025142 184 VEHNLKDLQSMI 195 (257)
Q Consensus 184 i~~dv~~v~~~V 195 (257)
+..|+.++++++
T Consensus 65 L~~q~Tslr~~~ 76 (125)
T 4g2k_A 65 LLRVTTEERTFS 76 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 179
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.21 E-value=1.3e+02 Score=25.03 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 025142 56 DAIKDQLNRLKFEC 69 (257)
Q Consensus 56 d~L~aQV~~L~~El 69 (257)
..|-..+.++|+||
T Consensus 16 s~LeD~L~~~R~el 29 (154)
T 2ocy_A 16 SHLEEQLNKSLKTI 29 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 33444455555555
No 180
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=37.21 E-value=72 Score=26.11 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025142 160 VEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 160 ld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
|.+.+++++.+.+++..+..++.+|-.|..+
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444455555555555555554444444
No 181
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.09 E-value=1.5e+02 Score=28.11 Aligned_cols=37 Identities=8% Similarity=0.019 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHH
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
+.|.+.+..-+..|..+|..+|....-...-+..+..
T Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 68 GEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666555555555554443
No 182
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=37.05 E-value=53 Score=23.66 Aligned_cols=36 Identities=8% Similarity=0.097 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhh
Q 025142 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGK 201 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~K 201 (257)
...+-.....+++.-|..|+.-++.-+.....-|.+
T Consensus 54 ~~~~W~~~~~~l~~~L~~i~~~l~~a~~~y~~~d~~ 89 (96)
T 3h6p_C 54 WQTQWNQALEDLVRAYQSMSGTHESNTMAMLARDGA 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444443
No 183
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=37.01 E-value=47 Score=32.61 Aligned_cols=84 Identities=12% Similarity=0.226 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQ---RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsq---RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
-+|..|--.|-|..+.+.+-+...+..+.. +|...++-|+..-... .-++|..-+.|++.+..++...+..+..+
T Consensus 43 G~lNra~v~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~--vi~qI~~n~~dI~~Lk~~~~~~~~~l~~~ 120 (487)
T 2bsg_A 43 GSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIE--ALAQIGINKKDISDLKTLTSEHTEILNGT 120 (487)
T ss_pred cccccchhhhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhccccHH--HHHHHHhhHHHHHHHhcchhhhhhhhhhh
Confidence 456777778888888888888888877777 4444444444322111 22444444555555555555555555555
Q ss_pred hhhhhhhhh
Q 025142 199 DGKIDSLAD 207 (257)
Q Consensus 199 e~Ki~~ie~ 207 (257)
..++++|+.
T Consensus 121 ~~~~~ei~~ 129 (487)
T 2bsg_A 121 NNTVDSILA 129 (487)
T ss_pred ccchHHHHh
Confidence 555555543
No 184
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=36.89 E-value=14 Score=26.22 Aligned_cols=21 Identities=14% Similarity=0.483 Sum_probs=18.8
Q ss_pred eeEeecCCcchhHHHhhhhHH
Q 025142 105 YMWWKGLSFADLMYVTRKSMA 125 (257)
Q Consensus 105 YmwWKGws~sDlMfVTkr~ms 125 (257)
++.|||++-+|--|-...||.
T Consensus 19 lVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 19 LVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEecCCCcCCcEeEHHHCC
Confidence 489999999999999999994
No 185
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=36.88 E-value=1.5e+02 Score=23.17 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhh
Q 025142 124 MATAVSNLNKHLES---VTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDG 200 (257)
Q Consensus 124 ms~Av~sv~kqLeq---VsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~ 200 (257)
|+|-.+++-..|+. -.+.|...|++|..-+..+...=.+ -.+.+.+++..+...=..++.=+-.-..||.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~-------R~~~i~el~akidd~Lk~l~~EklAkldLE~ 74 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAE-------REKRLRELEAKLDETLKNLELEKLARMELEA 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44555555554443 2344555555554444333222111 1222444444444333333333334445666
Q ss_pred hhhhhh
Q 025142 201 KIDSLA 206 (257)
Q Consensus 201 Ki~~ie 206 (257)
++...|
T Consensus 75 RLsKtE 80 (101)
T 1d7m_A 75 RLAKTE 80 (101)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 666444
No 186
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.70 E-value=62 Score=30.27 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=5.1
Q ss_pred HHHHhhhhhhhhh
Q 025142 193 SMIYCLDGKIDSL 205 (257)
Q Consensus 193 ~~V~~Le~Ki~~i 205 (257)
..-+.|..++.++
T Consensus 45 ~~rr~l~n~~~el 57 (403)
T 4etp_A 45 TVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 3333444444433
No 187
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.57 E-value=1.1e+02 Score=26.90 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 025142 121 RKSMATAVSNLNKHLESVTEALTVAKK 147 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVsesL~~tKk 147 (257)
|+.++.-.+.+-+.+..+...|+.++.
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~~~~~ 192 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLSRTRD 192 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 188
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=36.14 E-value=2e+02 Score=24.37 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhc
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDG 225 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~ 225 (257)
..+.+.++.++..||....+++.+=+....-+..+=+|..-
T Consensus 55 ~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~ 95 (174)
T 2p22_A 55 AIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST 95 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555555555555555555555444444445566544
No 189
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=36.10 E-value=2e+02 Score=24.39 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
...+.+|++.|..+-+.....+..-+..+.+.. ++.+|..+++.+..-+...+..|.+
T Consensus 187 ~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~~~l~~Wl~~~~~~l~~ 244 (323)
T 3edv_A 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQIEA 244 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456667777777766666666666666665554 3556666666666555555555544
No 190
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=35.69 E-value=1.3e+02 Score=22.28 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
..-|-+|...|+++-.-+++.+.=-+.=...=+.+..|+..++.|++...-.=..||.|++++..--+
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555655555444432222212223455667777788888888888899999998865433
No 191
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=35.27 E-value=1.2e+02 Score=27.62 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHH
Q 025142 137 SVTEALTVAKKHLTQRIQNLNDKVE 161 (257)
Q Consensus 137 qVsesL~~tKkhLsqRI~~vd~kld 161 (257)
++++..+..|..|...++.+-.+|.
T Consensus 100 ~l~~~~~~Lr~~L~~dlEelR~~L~ 124 (307)
T 2l7b_A 100 RLSKELQAAQARLGADMEDVCGRLV 124 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444554444443
No 192
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=35.26 E-value=82 Score=22.24 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=30.9
Q ss_pred HHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh----hhhHhHHHHHHHHHh
Q 025142 173 NVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK----QDITNIGMYLLCNFV 223 (257)
Q Consensus 173 eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k----Qd~tn~GV~~Lc~f~ 223 (257)
++..+..++..+..=+..+..+|..=+.-|++||++ ++.+..|...|-.+.
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 61 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAA 61 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666666676667777777766 444455666665544
No 193
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=35.22 E-value=39 Score=27.23 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=33.4
Q ss_pred HHHHHHHh-hhhcCCCeEEEeCCCCCcceeehhhhhHhhhhh-----eeeeEeecCCcch
Q 025142 62 LNRLKFEC-QRASSGQIFVRNENSGGNATSLMIPAATLGALG-----YGYMWWKGLSFAD 115 (257)
Q Consensus 62 V~~L~~El-~La~sr~iTVvn~~sGg~~s~~ivpaA~vGavG-----YgYmwWKGws~sD 115 (257)
+++|++.+ .+...+.++.+-|.||+++|.+. -+..|.+. .||+...|.-++.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~--~~l~~~~~~~g~~~g~v~~d~~~~~~ 65 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS--NPLAAALSAQGLPAEVVPMDGFHLDN 65 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH--HHHHHHHHHTTCCEEEEESGGGBCCH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH--HHHHHHHhhcCCceEEEecCCCcCCH
Confidence 34556666 55334457778888887787665 23445554 7888888876654
No 194
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=35.10 E-value=1.2e+02 Score=23.63 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQ 154 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~ 154 (257)
|+...+-+-.+.+.+...|..==+.|.++|+
T Consensus 34 Ls~tfarLc~~Vd~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 34 MATTFARLCQQVDMTQKHLEEEIARLSKEID 64 (96)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444
No 195
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=35.03 E-value=1.2e+02 Score=21.55 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q 025142 125 ATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKN 173 (257)
Q Consensus 125 s~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~e 173 (257)
++=+++|.-+|+.|.+.....|+. |..||.++-+.++++..+-+-
T Consensus 8 ~eRve~m~~~l~Evnekv~~ik~s----L~~LD~~lg~Lqdlsal~v~t 52 (56)
T 3e7k_A 8 FERVEQMSIQIKEVGDRVNYIKRS----LQSLDSQIGHLQDLSALTVDT 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHH
Confidence 445788889999999998888885 567888888888888776543
No 196
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=34.97 E-value=89 Score=22.49 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHHhhHHhHHHHHHHHHHHH--------HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 150 TQRIQNLNDKVEKQNEISKDIR--------KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 150 sqRI~~vd~kld~~~eis~~i~--------~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
..++..++=.|++.+++...-. +-..-++.-...+...+..++.+...|+.++...+..
T Consensus 9 I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~ 75 (99)
T 1q08_A 9 IRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGT 75 (99)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444445555555555544221 1123344445555666666666666677776666543
No 197
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=34.91 E-value=2.1e+02 Score=26.04 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=45.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
++.+.+.|+.+...+..-+.+..+=++.|.+=-+++.+=....+..++.+..-+..-+.|+..++.-++.+...|+
T Consensus 118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 118 GETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 3444445555554444444444444444444334444444556666777777777778888888888888887776
No 198
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.70 E-value=1e+02 Score=28.27 Aligned_cols=35 Identities=9% Similarity=-0.054 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhh
Q 025142 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDS 204 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ 204 (257)
.+.+..+.++..+++..+-+.++...+.++.++.+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 33334444444444444444444444444444443
No 199
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.62 E-value=42 Score=30.97 Aligned_cols=13 Identities=8% Similarity=0.220 Sum_probs=5.9
Q ss_pred cccccCCCCCccc
Q 025142 241 YFLYDSNEIPSVT 253 (257)
Q Consensus 241 ~~~~~~~e~~~~~ 253 (257)
|.++|....+|+.
T Consensus 90 Y~I~p~~~~~pf~ 102 (323)
T 1lwu_C 90 YYIKPLKAKQPFL 102 (323)
T ss_dssp EEECCTTCSSCEE
T ss_pred EEEecCCCCCcEE
Confidence 3444544444443
No 200
>4f23_A Hemagglutinin, H16; sialic acid, glycolysation, membrane, viral P; HET: NAG; 1.70A {Influenza a virus} PDB: 4fiu_A*
Probab=34.58 E-value=31 Score=34.06 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=50.3
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH---HhhhhHHHhhhh
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVE---EACDDLFKVEHN 187 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL-------~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~---~v~~d~~~i~~d 187 (257)
=|-++|=..|...++..|..+.+.. ...=.+|..||++|++|+|+...=.=.-..|+- |=+..+..-..+
T Consensus 369 AAD~kSTQ~AId~It~k~N~iiekmn~qf~~i~~ef~~~e~ri~~l~~~~~D~~~dvwsynaELlVlleN~~tld~~Dsn 448 (515)
T 4f23_A 369 AADKTSTQKAINEITTKINNIIEKMNGNYDSIRGEFNQVEKRINMIADRVDDAVTDIWSYNAKLLVLIENDRTLDLHDAN 448 (515)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHTCCSCCSCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcHHHHhhhccCcccchhhHH
Confidence 3578999999999999998887643 223346889999999999987422222222322 222334444556
Q ss_pred HHHHHHHHH
Q 025142 188 LKDLQSMIY 196 (257)
Q Consensus 188 v~~v~~~V~ 196 (257)
|.++.+.|+
T Consensus 449 v~~L~ekvr 457 (515)
T 4f23_A 449 VRNLHEQIK 457 (515)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 201
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=34.55 E-value=1.2e+02 Score=21.23 Aligned_cols=30 Identities=7% Similarity=0.179 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
+|+++...+.....+|.+.++.|...++..
T Consensus 10 ~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 10 EIRAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555443
No 202
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=34.50 E-value=1.8e+02 Score=23.51 Aligned_cols=70 Identities=6% Similarity=0.152 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLT---QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDL 191 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLs---qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v 191 (257)
..+.+.+.+.--+|+.++..|+.....+. .|++.+..+|+....+.+--...+.++-.-..++...+..+
T Consensus 90 ~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l 162 (175)
T 4abx_A 90 MQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGL 162 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56888888888999999999988877774 78999999999888887766545555544444555555444
No 203
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.50 E-value=2.7e+02 Score=26.86 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 189 KDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
+.+..-+..|..+|..+|....-...-+..+
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333333333
No 204
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=34.29 E-value=1.6e+02 Score=22.88 Aligned_cols=72 Identities=8% Similarity=0.122 Sum_probs=53.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhh--HHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNL--NDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~v--d~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
...+.++...+.-+..|..+|+.. -+.+|++..-+...++.|++.-.-|- .+|+..-+..+..|..+++...
T Consensus 31 E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp--~YD~R~~q~~i~~L~~~l~e~r 104 (111)
T 2l3l_A 31 ENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLA--AYDLRQGQEALARLQAALAERR 104 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777778887766 55577777777777888877755443 5789999999999998888654
No 205
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=34.21 E-value=1.5e+02 Score=22.45 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 167 SKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 167 s~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
-+.|++|++.++.+.-.+.++++.-...-..|+..|..++
T Consensus 26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~ 65 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQ 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776666666655555555544444433
No 206
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.66 E-value=1.7e+02 Score=22.90 Aligned_cols=31 Identities=19% Similarity=0.491 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIR 171 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~ 171 (257)
.|.+.|..|..+|..+..++++..+......
T Consensus 73 ~L~~~k~eLe~~l~el~~rleeeee~~~~L~ 103 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELT 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444433333
No 207
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.58 E-value=38 Score=26.56 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 170 IRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 170 i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+.++++.++..++....+-+.+++-+..||.+|.+..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999998744
No 208
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.27 E-value=74 Score=21.86 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=17.8
Q ss_pred HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 174 VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 174 V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+..++.|--++..|-+++..++..|...|.++|.
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555566666666665553
No 209
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.18 E-value=77 Score=23.53 Aligned_cols=41 Identities=7% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 153 IQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
++.-+.+|.+..++++....++.+-...+.++.+.++.++.
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334455555556666666666665555666666655544
No 210
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.14 E-value=4.4e+02 Score=27.85 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (257)
.+.+-|+.+-+.++.+-.. ..-++.+..++..+++++++..+-.+...+|-.++++
T Consensus 957 ~~~~e~~~L~~~l~~le~~-~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655443 3333344455555555555554444444444333333
No 211
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.01 E-value=2.1e+02 Score=23.74 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 133 KHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 133 kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
|--+.=.+.-...-..|..-||++.++|+..++--+.|++++...-.++..+..++..+..-|..|
T Consensus 87 KEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 87 KEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
No 212
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=32.85 E-value=24 Score=27.10 Aligned_cols=20 Identities=45% Similarity=0.777 Sum_probs=18.2
Q ss_pred CCchhHHHHHHHHHHHhhhc
Q 025142 29 GKLPELLRELQSLVERLSKS 48 (257)
Q Consensus 29 GkLsd~~g~lq~~lk~~~k~ 48 (257)
|||.|++.+||+++|.+-|.
T Consensus 3 gklndlledlqevlknlhkn 22 (102)
T 1p68_A 3 GKLNDLLEDLQEVLKNLHKN 22 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999764
No 213
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=32.77 E-value=1.6e+02 Score=22.36 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 140 esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
..+...|.+|.+.|. |-=.+++-++.+++-.+..+.-..++..++...+..+..|..+|.+++.
T Consensus 21 ~~le~~r~~ir~eI~----KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 21 QQLELERERLRREIR----KELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH----HHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345556666666665 4445666677777666664555566666666666666666666665543
No 214
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.47 E-value=1.5e+02 Score=21.98 Aligned_cols=12 Identities=33% Similarity=0.299 Sum_probs=5.5
Q ss_pred HhhHHHHHHHHH
Q 025142 133 KHLESVTEALTV 144 (257)
Q Consensus 133 kqLeqVsesL~~ 144 (257)
|.++.+.+.+..
T Consensus 3 ~~~~~~~~~~~~ 14 (112)
T 1l8d_A 3 KLLEELETKKTT 14 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 445555554433
No 215
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.31 E-value=1e+02 Score=24.51 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHhhhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
...+..++.....|+.+|+..+
T Consensus 108 ~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 108 LQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455554443
No 216
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=32.19 E-value=2.2e+02 Score=23.79 Aligned_cols=25 Identities=12% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhH
Q 025142 164 NEISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~~dv 188 (257)
.++...++.++.+++..++-...++
T Consensus 98 e~lr~~l~kdlEelr~kL~P~~eEL 122 (191)
T 1nfn_A 98 QAAQARLGADMEDVCGRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444556666666766666655544
No 217
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=32.04 E-value=1.2e+02 Score=22.28 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=21.8
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHH
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKD 190 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~ 190 (257)
.+|.-||...++.+|+.+++.-.=+.++..++..+..+..-+++
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555544444444333
No 218
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=31.71 E-value=1e+02 Score=28.14 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Q 025142 154 QNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLL 219 (257)
Q Consensus 154 ~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 219 (257)
+.+++=.++.+++.++-.+++ +.....|++.+...|.+|+..|.++..=.---.+|+.+|
T Consensus 360 eal~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T 2xz3_A 360 AALAAAQTNAAALSHQRLTSL------IHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWL 419 (463)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
No 219
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=31.68 E-value=93 Score=26.24 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=40.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 132 ~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
-.=|+.+.+.....-+++..+|+.+++++-+.. ......++..++.++-.++.=+...+.++..|.
T Consensus 174 ~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~--~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 239 (269)
T 2bbh_A 174 YSLIDALVDDYFVLLEKIDDEIDVLEEEVLERP--EKETVQRTHQLKRNLVELRKTIWPLREVLSSLY 239 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788888888888888877754321 123344566666666666666666666665554
No 220
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=31.37 E-value=2.2e+02 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhH
Q 025142 166 ISKDIRKNVEEACDDLFKVEHNL 188 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv 188 (257)
+...+.+++.++|..++-+..++
T Consensus 104 l~~~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 104 FQKKWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 44444455555555554444444
No 221
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.12 E-value=1.7e+02 Score=22.70 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 025142 141 ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 141 sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
.+...-++|..+...++.++....+--..-+..=..+....++|..+++.+-
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555443333333333344444455555555543
No 222
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.92 E-value=1.6e+02 Score=21.70 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+++|++.+..+=.+..+-....++++.+-+..-++...+++ ...+.|++||..+.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk---~~~e~Ld~KI~eL~ 59 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK---TLLEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHH
Confidence 44555544444444433333444444444443333333333 33445566666554
No 223
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=30.37 E-value=65 Score=23.13 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~ 203 (257)
+.+++.+..-|..||..|.
T Consensus 47 ggevkkveeevkkleeeik 65 (67)
T 1lq7_A 47 GGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp SSTHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHh
Confidence 5677777777777776664
No 224
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A* 2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A* 3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Probab=30.34 E-value=48 Score=32.70 Aligned_cols=78 Identities=22% Similarity=0.229 Sum_probs=51.2
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH---HHhhhhHHHhhhhH
Q 025142 119 VTRKSMATAVSNLNKHLESVTEAL-------TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV---EEACDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVsesL-------~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV---~~v~~d~~~i~~dv 188 (257)
|-++|=+.|...++..|..+-|.. ...=.+|.+||++|.+++|+...=.=.-..|+ -|=+..+.--..+|
T Consensus 376 AD~kSTQ~AId~It~K~N~iiek~n~qf~~i~~ef~~~e~ri~~l~~~v~D~~~dvwsynaeLLV~leN~~Tld~~Dsnv 455 (509)
T 2wr1_A 376 ADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNV 455 (509)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhccHHHHhhhccchhhhhhhhHH
Confidence 567899999999999888875532 22225788999999999998743222222332 22234455556677
Q ss_pred HHHHHHHH
Q 025142 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
+++.+.|+
T Consensus 456 ~~l~ekvr 463 (509)
T 2wr1_A 456 KNLYDKVR 463 (509)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766664
No 225
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=30.21 E-value=1.2e+02 Score=21.00 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=26.3
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhH
Q 025142 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNI 214 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 214 (257)
+++..+..++..+..=+..+..+|..=+.-|++||++-+.|..
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 51 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666677667777777776555543
No 226
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=30.03 E-value=1.7e+02 Score=21.72 Aligned_cols=52 Identities=19% Similarity=0.375 Sum_probs=31.6
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
-+.-|..+|.|+...+.+-+.+=+.+..+..|=.....|+..| |.||+-+++
T Consensus 19 a~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i-------~~rle~~qe 70 (72)
T 2xu6_A 19 TMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQI-------DDRLDFLEE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHh
Confidence 3456888888888888887777777777766655555555555 777665554
No 227
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=29.71 E-value=1.3e+02 Score=20.33 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhhhHH
Q 025142 166 ISKDIRKNVEEACDDLF 182 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~ 182 (257)
++.+++.-++.+..-++
T Consensus 67 ~shel~~~l~~i~~~~~ 83 (115)
T 3zrx_A 67 VSHDLRTPLTRIRLATE 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 33333333333333333
No 228
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=29.58 E-value=1.1e+02 Score=24.92 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=29.6
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhH
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDIT 212 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 212 (257)
+.+-|++|.++||.+.- +..-...++|.+- +..+..-+..|+.+|.++..+|.+.
T Consensus 8 ~K~Eiq~L~drLD~~~r-----Klaaa~~rgd~~~----i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRH-----QQADLSLVEAADK----YAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHSCTTTCTTH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHhCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777776621 1111122333322 2334445566688888888777653
No 229
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=29.57 E-value=2.8e+02 Score=26.95 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhh
Q 025142 184 VEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 184 i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
+-..|+.++.+++.+..||..++
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~ 183 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLE 183 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666554
No 230
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=29.53 E-value=39 Score=28.55 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=41.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
-+-.=|+.+.+.....-+++..+|+.+++++-+. ......++..+|.++-.++.=+...+.++..|.
T Consensus 148 ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~---~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 214 (264)
T 3nvo_A 148 WLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ---QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLA 214 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444566677777777777777777777776432 233445566666666666666666666666664
No 231
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=29.02 E-value=12 Score=34.44 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 164 NEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 164 ~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.+++..++++| .++..+++.++..+..||.|+.+.
T Consensus 33 ~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~ 67 (385)
T 3p8q_A 33 GQVSKQLQSDL-------MKVQEELTKSGTRLFDLEQKLASG 67 (385)
T ss_dssp ------------------------------------------
T ss_pred CCccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccc
Confidence 34445555555 444455555555556666666554
No 232
>4i78_C Hemagglutinin HA2; influenza VRUS, hemagglutinin homologue, viral protein, ectodomain; HET: NAG FUC; 3.18A {Influenza a virus}
Probab=28.97 E-value=30 Score=29.79 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=49.1
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhh
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALT-------VAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHN 187 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~-------~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~d 187 (257)
=+.++|-..|...++..|..|.+... ..=.++.+||.+|++++|+...-.=.-..|+-.+ +..+.--...
T Consensus 35 AAD~kSTQ~AId~It~KvN~iiekmn~qfe~v~~Ef~~~e~ri~~l~~~vdD~~~dvwsynaELLVlleNe~tld~hDsn 114 (181)
T 4i78_C 35 AADKEATQKAVDGITNKVNSIIDKMNSQFESNIKEFNRLELRIQHLSDRVDDALLDIWSYNTELLVLLENERTLDFHDAN 114 (181)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHTCCCCEEECBCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHccccccchhhHH
Confidence 35789999999999999888876432 2234577899999999998754333333343322 2333333445
Q ss_pred HHHHHHHH
Q 025142 188 LKDLQSMI 195 (257)
Q Consensus 188 v~~v~~~V 195 (257)
|.++.+.|
T Consensus 115 v~nL~ekv 122 (181)
T 4i78_C 115 VKNLFEKV 122 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 233
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=28.95 E-value=1.8e+02 Score=21.64 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=10.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 025142 129 SNLNKHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 129 ~sv~kqLeqVsesL~~tKkhLsqR 152 (257)
+.+-.+++.|-..+...=..+-+|
T Consensus 8 ~~vq~ev~evk~iM~~NI~kvL~R 31 (91)
T 3hd7_A 8 QQTQAQVDEVVDIMRVNVDKVLER 31 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444444444333
No 234
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=28.91 E-value=1.6e+02 Score=20.99 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=32.5
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh----hhhHhHHHHHHHHHhh
Q 025142 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK----QDITNIGMYLLCNFVD 224 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k----Qd~tn~GV~~Lc~f~~ 224 (257)
+++..+..++..++.=+..+..+|..=+.-|++||+| ++.+..|...|-.+..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666666667777777765 4455566667766554
No 235
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.23 E-value=2.5e+02 Score=24.81 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHhhHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEA 141 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVses 141 (257)
.+..+.+..+...++.+.+.
T Consensus 167 d~~~~~l~~l~~~i~~lE~~ 186 (339)
T 4ev6_A 167 RSYSRILMNLEDELEELEDK 186 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666665544
No 236
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=28.06 E-value=1.8e+02 Score=21.29 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q 025142 123 SMATAVSNLNK 133 (257)
Q Consensus 123 ~ms~Av~sv~k 133 (257)
.|.++...+..
T Consensus 15 ~l~~~a~~~~~ 25 (103)
T 4i0x_B 15 HIEQVTSRARG 25 (103)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444333333
No 237
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=27.91 E-value=92 Score=26.75 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhh
Q 025142 134 HLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 134 qLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le 199 (257)
=|+.+.+.....-+.+..+|+.+++++-+. .....-.++..++.++-.++.=+...+.++..|.
T Consensus 161 lld~ivd~y~~~l~~i~~~id~lE~~l~~~--~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~ 224 (280)
T 4egw_A 161 ILNEITRSYSRILMNLEDELEELEDKLLAG--YDREVMEKILGLRKTLVYFHKSLIANRDVLVLLK 224 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356666666666667777777666665321 2233344566666666666666666666666553
No 238
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.83 E-value=1.5e+02 Score=20.41 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=15.3
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~ 182 (257)
+|..+++.+..+=....+.-+.-++++..+++.++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 239
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.81 E-value=2.1e+02 Score=21.98 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=22.7
Q ss_pred hhhheeeeEeecCCcchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 025142 99 GALGYGYMWWKGLSFADLMYVTRKSMATAVSNLNKHLESVTEALTVAK 146 (257)
Q Consensus 99 GavGYgYmwWKGws~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tK 146 (257)
.-+|.||+-.+ +..+|..-+.+.++.+...+....
T Consensus 74 v~lG~g~~vE~-------------~~~eA~~~l~~r~~~l~~~~~~l~ 108 (133)
T 1fxk_C 74 MSVGAGVAIKK-------------NFEDAMESIKSQKNELESTLQKMG 108 (133)
T ss_dssp EEEETTEEEEE-------------EHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCEEEEe-------------eHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788887654 567787777777766655554443
No 240
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.56 E-value=30 Score=28.17 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHHHhhhcCCCC------CchHHHHHHHHHHH
Q 025142 31 LPELLRELQSLVERLSKSGEQD------NFTDAIKDQLNRLK 66 (257)
Q Consensus 31 Lsd~~g~lq~~lk~~~k~gd~~------~~~d~L~aQV~~L~ 66 (257)
|+|-++.++.=+......||.. ...+.|.++|.+|+
T Consensus 15 L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 15 LSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665556666665 45667777777775
No 241
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=27.47 E-value=2.4e+02 Score=22.72 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH-----HHHHH------H------HHHHhhhhHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEI-----SKDIR------K------NVEEACDDLF 182 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~ei-----s~~i~------~------eV~~v~~d~~ 182 (257)
.++.+..-...+.+.|+...+++..--..+..+|...|+++|+...- .+.+. . .+..+-.+++
T Consensus 16 ~~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lE 95 (227)
T 1t72_A 16 TKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLE 95 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666554556667777777776654321 11111 0 1223446777
Q ss_pred HhhhhHHHHHHHHHhhh
Q 025142 183 KVEHNLKDLQSMIYCLD 199 (257)
Q Consensus 183 ~i~~dv~~v~~~V~~Le 199 (257)
+|++-..+|-..+..+.
T Consensus 96 RIgD~a~nIa~~~~~~~ 112 (227)
T 1t72_A 96 RMGDEAENIAERAILLA 112 (227)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77777777666555443
No 242
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.44 E-value=1.1e+02 Score=21.06 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=21.8
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 025142 147 KHLTQRIQNLNDKVEKQNEISKDIRKNVEE 176 (257)
Q Consensus 147 khLsqRI~~vd~kld~~~eis~~i~~eV~~ 176 (257)
..|...||+|.++|...++--+.+.+++.-
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457777888888888877777777666543
No 243
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.14 E-value=1.8e+02 Score=21.20 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 166 ISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 166 is~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
.......++..++.|+.+.-.|-+.+-.+=..||-.|
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3334455666666666666666666655555555444
No 244
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=27.05 E-value=1.1e+02 Score=19.01 Aligned_cols=25 Identities=32% Similarity=0.326 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHH
Q 025142 139 TEALTVAKKHLTQRIQNLNDKVEKQ 163 (257)
Q Consensus 139 sesL~~tKkhLsqRI~~vd~kld~~ 163 (257)
|++|..--..|.++++.+.+||+..
T Consensus 3 wealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666777888888887643
No 245
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.40 E-value=1.6e+02 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 025142 121 RKSMATAVSNLNKHLESVTEALTVAKK 147 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVsesL~~tKk 147 (257)
+=|+.+..+++.++++++...+++.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (426)
T 1lrz_A 242 YINFDEYIKELNEERDILNKDLNKALK 268 (426)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555543
No 246
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.32 E-value=78 Score=20.50 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=9.4
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHH
Q 025142 152 RIQNLNDKVEKQNEISKDIRKNVE 175 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~ 175 (257)
|...|.+|+++...=-....+||.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~ 25 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHH
Confidence 334444444444333333333443
No 247
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.24 E-value=1.7e+02 Score=20.61 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=21.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025142 128 VSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkhLsqRI~~vd 157 (257)
.+.+-.|++.|...+......+..|-++|+
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~ 35 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLS 35 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888887777766444
No 248
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.22 E-value=84 Score=28.27 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=15.6
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh
Q 025142 148 HLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD 180 (257)
Q Consensus 148 hLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d 180 (257)
.|..+++.+..+.+.+.+..+..++|+..+++.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444444444444444333
No 249
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.16 E-value=3.3e+02 Score=26.37 Aligned_cols=24 Identities=21% Similarity=0.262 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHH
Q 025142 120 TRKSMATAVSNLNKHLESVTEALT 143 (257)
Q Consensus 120 Tkr~ms~Av~sv~kqLeqVsesL~ 143 (257)
-||.+...+..+-+.-..+|..|.
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~ 64 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIG 64 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 250
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=26.15 E-value=9.5 Score=32.51 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.3
Q ss_pred hheeccccceeee
Q 025142 13 LMLAGLGYTGTIL 25 (257)
Q Consensus 13 ~iLvGAG~~GSvl 25 (257)
+++||||++|+.+
T Consensus 7 ViIVGaGpaGl~~ 19 (397)
T 3oz2_A 7 VLVVGGGPGGSTA 19 (397)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 5789999998744
No 251
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.08 E-value=1.9e+02 Score=21.11 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=10.2
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHH
Q 025142 153 IQNLNDKVEKQNEISKDIRKNVE 175 (257)
Q Consensus 153 I~~vd~kld~~~eis~~i~~eV~ 175 (257)
++.+..++++..+-...+..++.
T Consensus 24 le~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444443
No 252
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.07 E-value=73 Score=20.64 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=13.9
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025142 152 RIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
|...+.+|+++...--..+.+||.-++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 444555565555555555555555443
No 253
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=25.76 E-value=2.4e+02 Score=22.04 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=3.7
Q ss_pred HHHHHHHHHh
Q 025142 146 KKHLTQRIQN 155 (257)
Q Consensus 146 KkhLsqRI~~ 155 (257)
|+.|..+...
T Consensus 36 r~ele~~~~~ 45 (129)
T 2fxo_A 36 RKELEEKMVS 45 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 254
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.69 E-value=1.9e+02 Score=20.94 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025142 140 EALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 140 esL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
.+=++-+..=.++|..|..++++.......+..+...++..+..+..++.
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556677777777777777666666666666666655555443
No 255
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=25.28 E-value=84 Score=20.33 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=12.1
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 152 RIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 152 RI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
|...+.+|+++...--...++||..+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34445555555444444444444443
No 256
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=25.02 E-value=70 Score=22.04 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 025142 131 LNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 131 v~kqLeqVsesL~~tKkhLsq 151 (257)
++.+|.++..+|++++.||.+
T Consensus 12 ISseL~~iNnsL~~A~~~I~e 32 (48)
T 2fyz_B 12 ISTELSKVNASLQNTVKYIKE 32 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888887654
No 257
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=24.87 E-value=3.1e+02 Score=24.88 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA 177 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v 177 (257)
=|.-+.|..+++...+--|+-...|...-..+..|+..+|+++++...-+..|.++|..+
T Consensus 197 AVNv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 197 AVNYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp BCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666555555544444444444444444445555555555555555555555444
No 258
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.62 E-value=1.3e+02 Score=23.87 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhh-------hh-------h--hhhHhHHHHHHHHHhhcccCCcccchhcc
Q 025142 185 EHNLKDLQSMIYCLDGKIDSL-------AD-------K--QDITNIGMYLLCNFVDGKKGRTTESMQVG 237 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~i-------e~-------k--Qd~tn~GV~~Lc~f~~~~~~~~~~~~~~~ 237 (257)
+.|.+.++.++..|-.| +.+ +. . .-.+..=+..++..++|+.+=-|+.-|-|
T Consensus 81 ~~d~~~lr~~~~~l~~~-~~vv~l~~~~~~~~~v~~~~~~~~~a~~lvk~~~~~~gGkGGGkp~~AQgg 148 (171)
T 2zvf_A 81 DADMQALQKLAERLAEK-GAVGCLMAKGEGKVFVVTFSGQKYDARELLREIGRVAKGSGGGRKDVAQGA 148 (171)
T ss_dssp SCCHHHHHHHHHHHHHT-TEEEEEEEECSSSEEEEEEESSSSCHHHHHHHHHHHHTEECCBCSSEEEEE
T ss_pred CCCHHHHHHHHHHHhcC-CCEEEEEEcCCCeEEEEEECCCCCCHHHHHHHHHHHcCCCCCCcHHHcccC
Confidence 67889999998887554 211 00 0 12233447788888899888888884433
No 259
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=24.58 E-value=55 Score=28.70 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=36.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 025142 130 NLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQ 209 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 209 (257)
++.++|.+++..+..|- ++.+..+-|+-..+.+.-.++=+|+.-.+.++..|++++..-.+.|-. ..|-..|
T Consensus 4 ~L~~dls~Lsq~m~~~L------Le~i~~~YddY~~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~qL~~--~~i~~Tr 75 (204)
T 2jqq_A 4 SLIRDLSGLSQKMVQTL------LEQIRSNYDDYLTFSNTYTDEENETLINLEKTQSDLQKFMTQLDHLIK--DDISNTQ 75 (204)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHHHHHHHH--HSCSTTH
T ss_pred hHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHH
Confidence 44555555555555442 677788888888888888888788888889999999988666665544 3667889
Q ss_pred hhHhHHHHHHHHH----hhccc-CCcccchhcc
Q 025142 210 DITNIGMYLLCNF----VDGKK-GRTTESMQVG 237 (257)
Q Consensus 210 d~tn~GV~~Lc~f----~~~~~-~~~~~~~~~~ 237 (257)
+..+.-|.||=.- ...++ ..+|+.++.|
T Consensus 76 e~v~d~l~YLkkLD~l~~~Lq~h~~Lse~l~l~ 108 (204)
T 2jqq_A 76 EIIKDVLEYLKKLDEIYGSLRNHSQLTEALSLG 108 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999998542 22333 6677766554
No 260
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=24.39 E-value=1.1e+02 Score=27.65 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=14.8
Q ss_pred cccccchhhhheeccc----cceeeeccCCCc
Q 025142 4 QAGMSFQKILMLAGLG----YTGTILVKDGKL 31 (257)
Q Consensus 4 q~g~~l~kv~iLvGAG----~~GSvl~k~GkL 31 (257)
..|.+.|.++.. |-. ..-.+.+.+|+.
T Consensus 21 ~~g~~pg~~~~~-~~~~~~~~i~~~~y~~~~~ 51 (363)
T 2iub_A 21 KKGLPPGTLVYT-GKYREDFEIEVMNYSIEEF 51 (363)
T ss_dssp CCSCCTTCCCCC-SSCCSCCEEEEEEECSSCE
T ss_pred CCCCCCcceecc-CCCCCCeEEEEEEEcCCce
Confidence 568888866433 532 123345556664
No 261
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=24.30 E-value=2.8e+02 Score=22.32 Aligned_cols=78 Identities=10% Similarity=0.129 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH-----HH------------HHHHHhhhhHHH
Q 025142 121 RKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKD-----IR------------KNVEEACDDLFK 183 (257)
Q Consensus 121 kr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~-----i~------------~eV~~v~~d~~~ 183 (257)
++.+..-+..+.+.|+...+++..--..+..+|...|+++|+...-... +. -.+..+-.++++
T Consensus 13 ~~~l~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~p~~~d~~~~~~~l~i~~~lER 92 (217)
T 1xwm_A 13 HNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALWLIAAQQPVATDLRRIVAAIKIASDIER 92 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777777766667777888777777765322211 11 112233356666
Q ss_pred hhhhHHHHHHHHHhh
Q 025142 184 VEHNLKDLQSMIYCL 198 (257)
Q Consensus 184 i~~dv~~v~~~V~~L 198 (257)
||+-..+|-..+..+
T Consensus 93 IgD~a~nIa~~~~~~ 107 (217)
T 1xwm_A 93 IADFAVNIAKACIRI 107 (217)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666665555444
No 262
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=24.18 E-value=2.7e+02 Score=27.72 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=42.4
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh-------hHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHH
Q 025142 149 LTQRIQNLNDKVEKQNEISKDIRKNVEEACD-------DLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLCN 221 (257)
Q Consensus 149 LsqRI~~vd~kld~~~eis~~i~~eV~~v~~-------d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 221 (257)
|.||++.-..++.....-..+.+..|..+.. .+.....+=..++..+..++.|+.+-..|++-- .-|..-+.
T Consensus 354 lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~-~aIKDAVk 432 (602)
T 1cii_A 354 LRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDEL-KATKDAIN 432 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHH-HHHHHHHH
Confidence 4466555444444443333333334433332 333333333345666677777777777777733 33666666
Q ss_pred HhhcccCCccc
Q 025142 222 FVDGKKGRTTE 232 (257)
Q Consensus 222 f~~~~~~~~~~ 232 (257)
|+.+...++.+
T Consensus 433 fTAdFykkIsE 443 (602)
T 1cii_A 433 FTTEFLKSVSE 443 (602)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66554444444
No 263
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=23.98 E-value=3.3e+02 Score=23.06 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHh-hhhc
Q 025142 56 DAIKDQLNRLKFEC-QRAS 73 (257)
Q Consensus 56 d~L~aQV~~L~~El-~La~ 73 (257)
..+..-|+..+.+- .||-
T Consensus 69 ~~i~~~I~~IA~QTNLLAL 87 (227)
T 1qu7_A 69 ADIISVIDGIAFQTNILAL 87 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 4444
No 264
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=23.90 E-value=67 Score=20.39 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhhHHHhhhhHHHHH
Q 025142 169 DIRKNVEEACDDLFKVEHNLKDLQ 192 (257)
Q Consensus 169 ~i~~eV~~v~~d~~~i~~dv~~v~ 192 (257)
.|+.|+..++..+..|.+++..++
T Consensus 6 aikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777664
No 265
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=23.86 E-value=1.9e+02 Score=20.31 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=7.1
Q ss_pred HHHHHHHHhhhhhhhhhhh
Q 025142 189 KDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie~ 207 (257)
++=+..+..++.|.+++..
T Consensus 34 d~QN~~ldrI~~k~d~~d~ 52 (64)
T 3b5n_D 34 DSQQKRLNNIEESTDDLDI 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 266
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.82 E-value=1.9e+02 Score=27.91 Aligned_cols=11 Identities=0% Similarity=-0.067 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 025142 143 TVAKKHLTQRI 153 (257)
Q Consensus 143 ~~tKkhLsqRI 153 (257)
++-+..+++.|
T Consensus 57 ~~~rN~~sk~i 67 (484)
T 3lss_A 57 KKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 267
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.72 E-value=3.9e+02 Score=23.83 Aligned_cols=19 Identities=5% Similarity=0.293 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 025142 124 MATAVSNLNKHLESVTEAL 142 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL 142 (257)
..+.+..+...+|.+.+.+
T Consensus 193 y~~~l~~l~~~id~lE~~v 211 (363)
T 2iub_A 193 YFVLLEKIDDEIDVLEEEV 211 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444445554444443
No 268
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=23.54 E-value=3.6e+02 Score=23.30 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=27.2
Q ss_pred HHHHHHHHHH---HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 025142 164 NEISKDIRKN---VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADK 208 (257)
Q Consensus 164 ~eis~~i~~e---V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~k 208 (257)
.|.+..++.- -.++-++.++--...+..+..+..+|.|+..++.+
T Consensus 92 ~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~k 139 (201)
T 3u0c_A 92 LEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTR 139 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 33444455555666677777788888887777643
No 269
>2yp5_A Hemagglutinin, haemagglutinin; viral protein, receptor binding, membrane fusion, influenza evolution, glycoprotein; HET: NAG MAN EPE TAM SIA; 1.79A {Influenza a virus} PDB: 2yp2_A* 2yp3_A* 2yp4_A* 2yp9_A* 2yp7_A* 2yp8_A* 1ha0_A* 3vun_A* 1mqm_A* 1mql_A* 1mqn_A* 3ztj_A* 1hge_A* 1hgd_A* 2hmg_A* 1hgh_A* 1hgf_A* 1hgg_A* 1eo8_A* 1hgi_A* ...
Probab=23.39 E-value=30 Score=34.12 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=50.2
Q ss_pred HhhhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHh---hhhHHHhhhhH
Q 025142 119 VTRKSMATAVSNLNKHLESVTE-------ALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEA---CDDLFKVEHNL 188 (257)
Q Consensus 119 VTkr~ms~Av~sv~kqLeqVse-------sL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v---~~d~~~i~~dv 188 (257)
|-|+|=.+|...++..|-.+.| ++...=.+|..||++|++|+|+...=.=.-..|+-.+ +..+..-..+|
T Consensus 365 AD~kSTQ~AId~It~KvN~iiek~n~qf~~i~~Ef~~le~ri~~l~~~vdD~~~diwsynaELlVlleNe~tld~~Dsnv 444 (503)
T 2yp5_A 365 ADLKSTQAAINQINGKLNRLIGKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEM 444 (503)
T ss_dssp ECHHHHHHHHHHHHHHHHHHSSCCEEECSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhcccccchhhHHH
Confidence 5689999999999999888765 3344445778999999999998743333333332222 23344444555
Q ss_pred HHHHHHHH
Q 025142 189 KDLQSMIY 196 (257)
Q Consensus 189 ~~v~~~V~ 196 (257)
.++.+.|+
T Consensus 445 ~nL~ekvr 452 (503)
T 2yp5_A 445 NKLFERTK 452 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 270
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=23.10 E-value=2.2e+02 Score=24.19 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhh--HHHHHHHHHhhhhhhhhhh
Q 025142 162 KQNEISKDIRKNVEEACDDLFKVEHN--LKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~~i~~d--v~~v~~~V~~Le~Ki~~ie 206 (257)
+..+.-..||+++..+..++..=..+ ..--...|..||..|+++.
T Consensus 55 ~~~~~L~~IQ~~Lf~lga~la~p~~~~~~~i~~~~v~~LE~~Id~~~ 101 (193)
T 1rty_A 55 DLTAELLTIQHELFDCGGDLAIVTERKDYKLTEESVSFLETRIDAYT 101 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHHH
Confidence 45555666677776666666542110 0001244555555555554
No 271
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=23.04 E-value=2e+02 Score=20.22 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=8.2
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 025142 158 DKVEKQNEISKDIRKNVE 175 (257)
Q Consensus 158 ~kld~~~eis~~i~~eV~ 175 (257)
..+|.|++....|.++|.
T Consensus 31 ~Eid~QN~~ldrI~~k~d 48 (64)
T 3b5n_D 31 KELDSQQKRLNNIEESTD 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 272
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=23.01 E-value=2e+02 Score=20.11 Aligned_cols=42 Identities=5% Similarity=0.192 Sum_probs=24.5
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHh
Q 025142 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
+++..+..++..+..=+..+..+|..=+.-|++||+|-+-|.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 51 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQ 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344445555555555556666666666677777776554443
No 273
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.83 E-value=2.3e+02 Score=22.34 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (257)
+..|.++++.++.++++..+..+.+++.+
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 274
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=22.82 E-value=52 Score=29.04 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=25.9
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhh
Q 025142 171 RKNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLAD 207 (257)
Q Consensus 171 ~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~ 207 (257)
+..|..+.-|+++.+.||-..-..+..||.|+..+|.
T Consensus 3 ~~~v~~~st~v~NlkssVS~~~l~ls~L~~Rv~~le~ 39 (211)
T 2vrs_A 3 QTTVDGNSTAISNLKSDISSNGLAITDLQDRVKSLES 39 (211)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eehhhhchhhhhhhhhhhhhhhhhhhhHHHHHHHHhc
Confidence 3446666777788888888888888888888887773
No 275
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.72 E-value=92 Score=20.14 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=7.3
Q ss_pred hhHHhHHHHHHHHHHHHHHH
Q 025142 155 NLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 155 ~vd~kld~~~eis~~i~~eV 174 (257)
.|.+|.++...--....++|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV 24 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33334333333333333333
No 276
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=22.71 E-value=2.5e+02 Score=21.25 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=6.0
Q ss_pred hHHHHHHHHHhhhhh
Q 025142 187 NLKDLQSMIYCLDGK 201 (257)
Q Consensus 187 dv~~v~~~V~~Le~K 201 (257)
|.+.++.....|+..
T Consensus 69 d~e~ik~k~~eL~~~ 83 (120)
T 2p32_A 69 EKEEFEHQQKDLEGL 83 (120)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 334444444444433
No 277
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=22.69 E-value=1.1e+02 Score=21.28 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRI 153 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI 153 (257)
=..||.+++..+.++-.++.+.++++..-|
T Consensus 16 TNeAV~~L~~g~~~la~Av~~iQ~~IN~~i 45 (51)
T 3kpe_A 16 TNKAVVSLSNGVSVLTSKVLDLKNYIDKQL 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888888888887776544
No 278
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.63 E-value=1.6e+02 Score=21.08 Aligned_cols=36 Identities=11% Similarity=0.416 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhh
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEAC 178 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~ 178 (257)
...+..|.++++.++.++++..++.+.++.-+....
T Consensus 38 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 38 QESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666655554443
No 279
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=22.60 E-value=2e+02 Score=20.06 Aligned_cols=8 Identities=13% Similarity=0.248 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 025142 137 SVTEALTV 144 (257)
Q Consensus 137 qVsesL~~ 144 (257)
+-+++|..
T Consensus 6 ~t~~~l~~ 13 (65)
T 1gl2_C 6 RATQSIER 13 (65)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 280
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=22.57 E-value=2e+02 Score=19.99 Aligned_cols=42 Identities=7% Similarity=0.122 Sum_probs=25.9
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhhHh
Q 025142 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQDITN 213 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 213 (257)
+++..+..++..+..=+..+..+|..=+.-|++||++-+-|.
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 53 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 53 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445555555555555566666666666777778777655443
No 281
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.35 E-value=68 Score=28.88 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=29.3
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHH
Q 025142 151 QRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQS 193 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~ 193 (257)
.|+..+..+++...+-.+.++++..+++..+.+.+.+++.+++
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3666777777666666666667777777777777777776654
No 282
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=22.21 E-value=1.2e+02 Score=22.55 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=11.7
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 025142 118 YVTRKSMATAVSNLNKHLESVTEALTVA 145 (257)
Q Consensus 118 fVTkr~ms~Av~sv~kqLeqVsesL~~t 145 (257)
+-|+--|.++.+.++|+++++++-|+.+
T Consensus 14 ~~s~eel~~~L~~~~k~~~Hl~~LL~Es 41 (71)
T 3bbp_D 14 EFTKEELVQKLSSTTKSADHLNGLLRET 41 (71)
T ss_dssp ---------------CTTSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4488899999999999999999998876
No 283
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=22.04 E-value=2.1e+02 Score=22.98 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHhhHHhHHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKK------HLTQRIQNLNDKVEKQNEI 166 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKk------hLsqRI~~vd~kld~~~ei 166 (257)
+.+..+|.+++++|+++...|....| +...-+-.||.++--..|.
T Consensus 14 ~~veksv~~~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~ 64 (114)
T 1hx1_B 14 KHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQ 64 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHH
Confidence 45667888889999999888877543 3333444555554444333
No 284
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=21.98 E-value=13 Score=32.06 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.6
Q ss_pred hheeccccceee
Q 025142 13 LMLAGLGYTGTI 24 (257)
Q Consensus 13 ~iLvGAG~~GSv 24 (257)
+++||||++|..
T Consensus 4 V~IVGaGpaGl~ 15 (412)
T 4hb9_A 4 VGIIGAGIGGTC 15 (412)
T ss_dssp EEEECCSHHHHH
T ss_pred EEEECcCHHHHH
Confidence 468899999864
No 285
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.92 E-value=2.8e+02 Score=21.51 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhh
Q 025142 162 KQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKI 202 (257)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki 202 (257)
+..........++..++.|+.+.-.|-+.+-.+=..||-.|
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556666666666666666666655555555444
No 286
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.92 E-value=75 Score=21.91 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=11.4
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 181 LFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 181 ~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
|.++..|++.+..-...|..++.+++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555554443
No 287
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.77 E-value=2.7e+02 Score=21.26 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhHHhHHH
Q 025142 146 KKHLTQRIQNLNDKVEK 162 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~ 162 (257)
|+.|.++|+.+...+++
T Consensus 17 kkkL~~Ki~el~~ei~k 33 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQK 33 (98)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666655555443
No 288
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=21.73 E-value=1.3e+02 Score=24.27 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhh
Q 025142 136 ESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACD 179 (257)
Q Consensus 136 eqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~ 179 (257)
-+|++.|+.==.+|..| ++.++.....+...|+++|.++++
T Consensus 21 ~qvsedLrrrIe~LkrK---V~~Qvq~i~~Lq~nVrdQvveMkR 61 (119)
T 1lwu_A 21 SEVLRELERRIIHLQRR---INMQLQQLTLLQHNIKTQVSQILR 61 (119)
T ss_dssp HHHHTTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555 456888888999999999888765
No 289
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.66 E-value=2.4e+02 Score=26.43 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhh
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDD 180 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d 180 (257)
..|++.+..+-++.+++-..+...+. .++.+..++-+....-+..-+++.++++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~----~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAA----ELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44555555444444444444333322 23333333433333444445555555543
No 290
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=21.62 E-value=2.5e+02 Score=23.78 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHH
Q 025142 162 KQNEISKDIRKNVEEACDDLF 182 (257)
Q Consensus 162 ~~~eis~~i~~eV~~v~~d~~ 182 (257)
+..+.-..||+++..+..++.
T Consensus 58 ~~~~~L~~IQ~~Lf~lga~la 78 (193)
T 2g2d_A 58 QITDVLRQIQNDLFDAGADLS 78 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 345555666666666666665
No 291
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.57 E-value=2.2e+02 Score=23.83 Aligned_cols=10 Identities=10% Similarity=0.391 Sum_probs=5.3
Q ss_pred EeecCCcchh
Q 025142 107 WWKGLSFADL 116 (257)
Q Consensus 107 wWKGws~sDl 116 (257)
+--|.|+.++
T Consensus 60 ~~~g~~l~~i 69 (278)
T 1r8e_A 60 KYIGTPLEEM 69 (278)
T ss_dssp HHTTCCHHHH
T ss_pred HHCCCCHHHH
Confidence 3346666654
No 292
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=21.56 E-value=97 Score=20.05 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=17.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 025142 131 LNKHLESVTEALTVAKKHLTQR 152 (257)
Q Consensus 131 v~kqLeqVsesL~~tKkhLsqR 152 (257)
++.+|.++..+|++++.||.+=
T Consensus 10 IS~eL~~~n~sl~~A~~~l~~S 31 (38)
T 1svf_B 10 ISQNLAAVNKSLSDALQHLAQS 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887654
No 293
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=21.53 E-value=2.3e+02 Score=20.43 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=32.9
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhhhhhhh----hHhHHHHHHHHHhh
Q 025142 172 KNVEEACDDLFKVEHNLKDLQSMIYCLDGKIDSLADKQD----ITNIGMYLLCNFVD 224 (257)
Q Consensus 172 ~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd----~tn~GV~~Lc~f~~ 224 (257)
+++..+..++..++.=+..+..+|..=+.-|++||++-+ .+..|...|..+..
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666666667777778888876654 45556666665543
No 294
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=21.45 E-value=3.4e+02 Score=22.25 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 025142 189 KDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 189 ~~v~~~V~~Le~Ki~~ie 206 (257)
...-..|..+|.+.+.++
T Consensus 160 ~~~~~~i~~lE~~~D~l~ 177 (227)
T 2olt_A 160 AKMINELDIIEEDTDDLQ 177 (227)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445566666666654
No 295
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=21.44 E-value=27 Score=34.79 Aligned_cols=11 Identities=45% Similarity=1.325 Sum_probs=9.6
Q ss_pred hheeeeEeecC
Q 025142 101 LGYGYMWWKGL 111 (257)
Q Consensus 101 vGYgYmwWKGw 111 (257)
+-|+|.||||.
T Consensus 522 vty~~f~wkgk 532 (584)
T 4dpv_Z 522 VTYSDFWWKGK 532 (584)
T ss_dssp CEEEEEEEEEE
T ss_pred EEEeeEEEccE
Confidence 57999999994
No 296
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=21.30 E-value=62 Score=27.45 Aligned_cols=64 Identities=13% Similarity=0.233 Sum_probs=32.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhh
Q 025142 132 NKHLESVTEALTVAKKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCL 198 (257)
Q Consensus 132 ~kqLeqVsesL~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~L 198 (257)
-.=|+.+.+.....-+++..+|+.+++++-+... ....++..++.++-.++.=+...+.++..|
T Consensus 175 ~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~---~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L 238 (266)
T 2hn1_A 175 YTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS---TLIGKIHSLKREILAFRNAVWPLRDVLSFF 238 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---CCCCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666665532110 122334444444444444444444444444
No 297
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=21.20 E-value=4.9e+02 Score=24.05 Aligned_cols=41 Identities=7% Similarity=0.117 Sum_probs=30.6
Q ss_pred HHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 025142 117 MYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQRIQNLN 157 (257)
Q Consensus 117 MfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd 157 (257)
++..-+........-+++.+++|+....++.++..+=+.++
T Consensus 124 ~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~ 164 (373)
T 3hhm_B 124 VGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIE 164 (373)
T ss_dssp GGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHH
Confidence 33455666777788899999999999999999887755554
No 298
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.19 E-value=2.8e+02 Score=21.10 Aligned_cols=9 Identities=44% Similarity=0.508 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 025142 142 LTVAKKHLT 150 (257)
Q Consensus 142 L~~tKkhLs 150 (257)
|..-|+||.
T Consensus 42 L~~LKkkl~ 50 (84)
T 1gmj_A 42 LAALKKHKE 50 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334455553
No 299
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.14 E-value=4e+02 Score=24.81 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHH
Q 025142 187 NLKDLQSMIYCLDGKIDSLADKQDITNIGMYLLC 220 (257)
Q Consensus 187 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 220 (257)
|.+.+..-+..|..+|..++....-...-+..+.
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455544444444444444333
No 300
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=21.13 E-value=25 Score=28.24 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.1
Q ss_pred eeeEeecCCcchhHHHhhhhHHH
Q 025142 104 GYMWWKGLSFADLMYVTRKSMAT 126 (257)
Q Consensus 104 gYmwWKGws~sDlMfVTkr~ms~ 126 (257)
-++.|||||-++=-|-+..||..
T Consensus 60 YlVKWkG~s~~~nTWEp~enL~~ 82 (115)
T 2b2y_C 60 YLIKWKGWSHIHNTWETEETLKQ 82 (115)
T ss_dssp EEEEETTSCGGGCEEECHHHHHH
T ss_pred EEEEECCCCchhcccCCHHHcCC
Confidence 46999999999999999888875
No 301
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=21.12 E-value=1.8e+02 Score=22.02 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhh
Q 025142 185 EHNLKDLQSMIYCLDGKIDSLADKQD 210 (257)
Q Consensus 185 ~~dv~~v~~~V~~Le~Ki~~ie~kQd 210 (257)
..=+++|+++....|.=|++....-+
T Consensus 58 k~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 58 KLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33356677777777777776655443
No 302
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=21.09 E-value=4.2e+02 Score=23.13 Aligned_cols=77 Identities=26% Similarity=0.253 Sum_probs=33.9
Q ss_pred cCCCeEEEeCCCCCcceeehhhhhHhhhhheeeeEeecCC-cchhHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025142 73 SSGQIFVRNENSGGNATSLMIPAATLGALGYGYMWWKGLS-FADLMYVTRKSMATAVSNLNKHLESVTEALTVAKKHLTQ 151 (257)
Q Consensus 73 ~sr~iTVvn~~sGg~~s~~ivpaA~vGavGYgYmwWKGws-~sDlMfVTkr~ms~Av~sv~kqLeqVsesL~~tKkhLsq 151 (257)
.+-||.++++... ..++.-|.-.||.+|. -|-++ ...+.-+-++-+.... .........+.++...+++..
T Consensus 76 ~~~pii~lt~~~~---~~~~~~a~~~ga~~yl---~KP~~~~~~l~~~i~~~~~~~~--l~~e~~~~~~~L~~~~~~L~~ 147 (394)
T 3eq2_A 76 SETPIIVLSGAGV---MSDAVEALRLGAADYL---IKPLEDLAVLEHSVRRALDRAY--LRVENQRYRDKLEAANRELQA 147 (394)
T ss_dssp CCCCEEEC---CH---HHHHHHHHHHTCSEEC---CSSCSCTHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCC---HHHHHHHHhcChhhEE---ECCCChHHHHHHHHHHHHhhhh--hhcccccchhhHHHHHHHHHH
Confidence 3457776664332 1345555566776654 56663 3334333333333222 112223334444444455555
Q ss_pred HHHhhH
Q 025142 152 RIQNLN 157 (257)
Q Consensus 152 RI~~vd 157 (257)
+.+.+.
T Consensus 148 ~~~~l~ 153 (394)
T 3eq2_A 148 SLNLLQ 153 (394)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 303
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.01 E-value=78 Score=29.90 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhhHH
Q 025142 146 KKHLTQRIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHNLK 189 (257)
Q Consensus 146 KkhLsqRI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~dv~ 189 (257)
|.+..++|+.+..++.+..+-.+.++.+-.++...+..+.++++
T Consensus 20 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~ 63 (405)
T 4b4t_J 20 KPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELR 63 (405)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666655555544444444444444444444444443
No 304
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.90 E-value=2.7e+02 Score=20.88 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 025142 123 SMATAVSNLNKHLESVTEALTVAKKHLTQRIQNL 156 (257)
Q Consensus 123 ~ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~v 156 (257)
+.......++-....|+..+..++++|...+...
T Consensus 43 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~ 76 (113)
T 1xsv_A 43 SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL 76 (113)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777888889999999988887653
No 305
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.78 E-value=69 Score=21.52 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=7.0
Q ss_pred Hhhhhhhhhhhhhhhh
Q 025142 196 YCLDGKIDSLADKQDI 211 (257)
Q Consensus 196 ~~Le~Ki~~ie~kQd~ 211 (257)
+.||.+|+.+|.|=+.
T Consensus 19 e~LE~Ri~~LE~KLd~ 34 (43)
T 2pnv_A 19 EDFEKRIVTLETKLET 34 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 306
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=20.74 E-value=4e+02 Score=22.80 Aligned_cols=48 Identities=8% Similarity=-0.027 Sum_probs=31.4
Q ss_pred HhHHHHHHHHHHHHHH---HHHhhhhHHHhhhhHHHHHHHHHhhhhhhhhh
Q 025142 158 DKVEKQNEISKDIRKN---VEEACDDLFKVEHNLKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 158 ~kld~~~eis~~i~~e---V~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~~i 205 (257)
.-|++..+.+..+++. +..+++--.-.|.=|+.|-.+++.+|.+|.+|
T Consensus 116 ~~l~~v~~~~~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv~~vE~~L~~l 166 (214)
T 1kmi_Z 116 QFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMV 166 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555544 44445544456777888888999999999877
No 307
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.67 E-value=2.2e+02 Score=28.99 Aligned_cols=84 Identities=15% Similarity=0.296 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHhHHH-HHHHHHHHHHHHHHhhhhHHHhhhhHHH-----HHHHHHh
Q 025142 124 MATAVSNLNKHLESVTEALTVAKKHLTQRIQNLNDKVEK-QNEISKDIRKNVEEACDDLFKVEHNLKD-----LQSMIYC 197 (257)
Q Consensus 124 ms~Av~sv~kqLeqVsesL~~tKkhLsqRI~~vd~kld~-~~eis~~i~~eV~~v~~d~~~i~~dv~~-----v~~~V~~ 197 (257)
|.+++.-+++++.++...++++|+++...-.+..+..|+ ..+--+...++|...+..++....+.+. ++.-|.-
T Consensus 622 l~~ti~kv~~rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~~l~~~~~~~k~l~~~~~~~fv~~ 701 (771)
T 1h2v_C 622 LHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI 701 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777766633222111111 1111222234455555555555555444 3445555
Q ss_pred hhhhhhhhhh
Q 025142 198 LDGKIDSLAD 207 (257)
Q Consensus 198 Le~Ki~~ie~ 207 (257)
|-..+..-+.
T Consensus 702 l~~~~~~~~~ 711 (771)
T 1h2v_C 702 LTEHLVRCET 711 (771)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhccchhc
Confidence 5555554443
No 308
>2y3w_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.98A {Danio rerio}
Probab=20.61 E-value=98 Score=26.01 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 025142 143 TVAKKHLTQRIQNLNDKVEKQNEISKDIRKNV 174 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~kld~~~eis~~i~~eV 174 (257)
+..|+||..|+..+-+++....+--++|++++
T Consensus 150 ~~ik~yLa~rl~~~k~~~~~l~~~L~~~~~~~ 181 (182)
T 2y3w_A 150 TDIKKYLASCLSSVKEEKQQLQQKLRKTEEDL 181 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666666666666555554444444443
No 309
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=20.54 E-value=72 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=13.4
Q ss_pred hHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 025142 180 DLFKVEHNLKDLQSMIYCLDGKIDSLA 206 (257)
Q Consensus 180 d~~~i~~dv~~v~~~V~~Le~Ki~~ie 206 (257)
.+..+..-++.+...+.-||.|+.+|.
T Consensus 46 KLa~ln~kL~~lE~~L~iLEAklsSI~ 72 (73)
T 3pp5_A 46 KLSDLNEKLTILDRQVDYLEATFKTVQ 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334444444455555556666666654
No 310
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=20.46 E-value=3.1e+02 Score=22.99 Aligned_cols=77 Identities=14% Similarity=0.289 Sum_probs=38.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH-HHHhhHHhHHHHHHHHHHHHHHHHHhhhhHHHhhhh---HHHHHHHHHhhhhhhhhh
Q 025142 130 NLNKHLESVTEALTVAKKHLTQ-RIQNLNDKVEKQNEISKDIRKNVEEACDDLFKVEHN---LKDLQSMIYCLDGKIDSL 205 (257)
Q Consensus 130 sv~kqLeqVsesL~~tKkhLsq-RI~~vd~kld~~~eis~~i~~eV~~v~~d~~~i~~d---v~~v~~~V~~Le~Ki~~i 205 (257)
.+...+|.+-+.+.++=+.+.- +++.++..+.++.++....-+++.++=..+.+++.| +...-.-|..||.+.+.+
T Consensus 98 ~L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~~~~~~~i~~~~~eI~~lE~eaD~l 177 (227)
T 3l39_A 98 DLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDV 177 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555542 233334444444444433333333333333333325 444445567777777766
Q ss_pred h
Q 025142 206 A 206 (257)
Q Consensus 206 e 206 (257)
.
T Consensus 178 ~ 178 (227)
T 3l39_A 178 Y 178 (227)
T ss_dssp H
T ss_pred H
Confidence 4
No 311
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.44 E-value=2.2e+02 Score=28.05 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=8.4
Q ss_pred HHHHhhHHhHHHHHHHHHHHHH
Q 025142 151 QRIQNLNDKVEKQNEISKDIRK 172 (257)
Q Consensus 151 qRI~~vd~kld~~~eis~~i~~ 172 (257)
++++.+...+++.......+++
T Consensus 366 ~~l~~~~~~~~~l~~~~~~~~~ 387 (695)
T 2j69_A 366 KRIDSVEPEFNKLTGIRDEFQK 387 (695)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444333333333333
No 312
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.42 E-value=3.1e+02 Score=21.39 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhHH----hHHHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHhhhhhhh
Q 025142 143 TVAKKHLTQRIQNLND----KVEKQNEISKDIRKNVEEACDDLFKVEHNLKDLQSMIYCLDGKID 203 (257)
Q Consensus 143 ~~tKkhLsqRI~~vd~----kld~~~eis~~i~~eV~~v~~d~~~i~~dv~~v~~~V~~Le~Ki~ 203 (257)
...|..|..+|..+.. .+.+.+........++..++.|+.+--.|-+.+-.+=..||-.|.
T Consensus 58 ~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIa 122 (131)
T 3tnu_A 58 LSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIA 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333 233334444455666667777777766666666555555555443
No 313
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=20.40 E-value=1.4e+02 Score=25.13 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=2.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 025142 128 VSNLNKHLESVTEALTVAKKH 148 (257)
Q Consensus 128 v~sv~kqLeqVsesL~~tKkh 148 (257)
.+.-.+..+.++..|..||+.
T Consensus 5 ~~~~~~~~~~I~~~l~~aKk~ 25 (179)
T 2f42_A 5 FTQRLNFGDDIPSALRIAKKK 25 (179)
T ss_dssp -----------------CCCT
T ss_pred HhhccccHHHHHHHHHHHHHH
Confidence 333445778888888888763
No 314
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=20.32 E-value=3.6e+02 Score=22.10 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHH
Q 025142 122 KSMATAVSNLNKHLESVTEALTVAK 146 (257)
Q Consensus 122 r~ms~Av~sv~kqLeqVsesL~~tK 146 (257)
+.++.+|.+++++|+.+...|..-.
T Consensus 24 ~dveksv~~~~k~l~~l~~el~~ie 48 (135)
T 1i6z_A 24 KDLEVSAEKIANHLQELNKELSGIQ 48 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888888876544
No 315
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=20.19 E-value=1.3e+02 Score=26.52 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=6.9
Q ss_pred HHHHhhHHhHHHH
Q 025142 151 QRIQNLNDKVEKQ 163 (257)
Q Consensus 151 qRI~~vd~kld~~ 163 (257)
.||.+|++++|+.
T Consensus 10 ~~~~~l~~~~e~l 22 (220)
T 2gtl_N 10 FLIIRLDRIIEKL 22 (220)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555544
No 316
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=20.04 E-value=3.4e+02 Score=24.25 Aligned_cols=40 Identities=8% Similarity=-0.016 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHhhcccCC
Q 025142 190 DLQSMIYCLDGKIDSLADKQDITNIGMYLLCNFVDGKKGR 229 (257)
Q Consensus 190 ~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~f~~~~~~~ 229 (257)
.+..-+..-+.++..++.-...+..-...+|.|.+....+
T Consensus 249 ~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~ 288 (340)
T 1v9d_A 249 KMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK 288 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4455566667777777766666666677888888754433
No 317
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.02 E-value=1.8e+02 Score=24.43 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=2.2
Q ss_pred HHHHHH
Q 025142 60 DQLNRL 65 (257)
Q Consensus 60 aQV~~L 65 (257)
.|++.|
T Consensus 58 ~el~~l 63 (191)
T 1nfn_A 58 QELRAL 63 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
Done!