Query 025143
Match_columns 257
No_of_seqs 149 out of 1875
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.9 1.9E-27 4E-32 192.3 6.4 228 20-253 74-329 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 4.3E-23 9.3E-28 160.8 11.2 226 17-253 98-347 (419)
3 KOG4341 F-box protein containi 99.8 4.6E-20 9.9E-25 149.8 4.6 213 39-252 172-406 (483)
4 KOG2120 SCF ubiquitin ligase, 99.7 1.9E-16 4.2E-21 124.0 7.0 157 81-247 207-390 (419)
5 KOG1947 Leucine rich repeat pr 99.5 6.8E-14 1.5E-18 122.1 10.8 218 32-255 189-438 (482)
6 cd00116 LRR_RI Leucine-rich re 99.5 4.6E-12 9.9E-17 104.9 17.5 188 56-252 80-286 (319)
7 KOG1947 Leucine rich repeat pr 99.4 7.8E-13 1.7E-17 115.5 10.3 137 114-250 188-327 (482)
8 cd00116 LRR_RI Leucine-rich re 99.4 2.3E-11 5E-16 100.7 16.9 190 57-253 108-316 (319)
9 KOG3207 Beta-tubulin folding c 99.0 4.2E-11 9.1E-16 98.7 0.8 182 55-250 144-332 (505)
10 KOG3665 ZYG-1-like serine/thre 99.0 2.4E-09 5.1E-14 96.4 9.6 159 82-251 120-282 (699)
11 KOG1909 Ran GTPase-activating 98.9 1.6E-08 3.4E-13 81.5 11.8 135 113-252 156-306 (382)
12 KOG3207 Beta-tubulin folding c 98.9 5.4E-10 1.2E-14 92.3 2.2 183 58-253 122-310 (505)
13 KOG1909 Ran GTPase-activating 98.9 3.4E-08 7.4E-13 79.6 12.1 190 55-250 56-276 (382)
14 PLN00113 leucine-rich repeat r 98.8 1E-08 2.2E-13 97.3 7.5 83 164-252 186-268 (968)
15 PF12937 F-box-like: F-box-lik 98.8 3.6E-09 7.9E-14 61.4 2.4 43 21-64 4-46 (47)
16 PLN00113 leucine-rich repeat r 98.8 2.1E-08 4.6E-13 95.1 7.7 84 164-253 210-293 (968)
17 KOG3665 ZYG-1-like serine/thre 98.7 3.2E-08 7E-13 89.2 8.3 134 113-252 121-258 (699)
18 PF14580 LRR_9: Leucine-rich r 98.6 1.5E-08 3.3E-13 75.7 2.8 105 113-227 41-149 (175)
19 KOG3864 Uncharacterized conser 98.5 1.4E-07 2.9E-12 70.7 4.4 90 115-207 102-191 (221)
20 KOG3864 Uncharacterized conser 98.5 1.3E-07 2.8E-12 70.9 3.4 92 141-235 102-193 (221)
21 PLN03210 Resistant to P. syrin 98.3 1.2E-06 2.7E-11 84.3 7.8 16 215-230 799-814 (1153)
22 KOG4194 Membrane glycoprotein 98.3 1.6E-07 3.4E-12 80.9 0.6 134 110-253 289-425 (873)
23 PF14580 LRR_9: Leucine-rich r 98.3 2.9E-07 6.3E-12 68.9 1.1 131 113-253 18-149 (175)
24 PLN03210 Resistant to P. syrin 98.2 2.3E-06 5.1E-11 82.4 6.4 62 166-232 846-907 (1153)
25 smart00256 FBOX A Receptor for 98.2 2.6E-06 5.7E-11 47.6 3.5 38 22-60 2-39 (41)
26 COG5238 RNA1 Ran GTPase-activa 98.0 0.00028 6.2E-09 55.8 13.4 193 57-254 30-252 (388)
27 KOG4194 Membrane glycoprotein 97.9 2.9E-06 6.4E-11 73.3 1.2 129 113-251 124-252 (873)
28 KOG0618 Serine/threonine phosp 97.9 2E-06 4.3E-11 77.8 0.0 127 85-230 360-488 (1081)
29 KOG0444 Cytoskeletal regulator 97.8 5.5E-07 1.2E-11 78.4 -4.9 40 191-234 221-260 (1255)
30 COG5238 RNA1 Ran GTPase-activa 97.8 0.00033 7.1E-09 55.5 10.5 171 53-232 54-256 (388)
31 PF00646 F-box: F-box domain; 97.8 7.8E-06 1.7E-10 47.5 1.2 36 23-59 8-43 (48)
32 KOG0444 Cytoskeletal regulator 97.7 7.2E-07 1.6E-11 77.7 -5.6 100 140-249 222-321 (1255)
33 smart00367 LRR_CC Leucine-rich 97.6 8.9E-05 1.9E-09 36.8 3.1 22 192-213 2-23 (26)
34 KOG2982 Uncharacterized conser 97.4 5.9E-05 1.3E-09 60.3 1.5 184 57-250 71-285 (418)
35 smart00367 LRR_CC Leucine-rich 97.4 0.00023 5.1E-09 35.3 3.0 24 165-188 1-24 (26)
36 KOG1259 Nischarin, modulator o 97.3 0.00015 3.2E-09 58.2 2.7 103 139-253 306-408 (490)
37 KOG2982 Uncharacterized conser 97.3 0.00022 4.8E-09 57.1 3.4 86 114-202 71-156 (418)
38 KOG0618 Serine/threonine phosp 97.3 0.00016 3.6E-09 65.9 2.8 107 81-204 380-488 (1081)
39 KOG2123 Uncharacterized conser 97.3 9.4E-05 2E-09 58.6 1.1 112 113-237 18-133 (388)
40 PF13855 LRR_8: Leucine rich r 97.2 1.6E-05 3.4E-10 48.8 -3.1 36 191-228 24-59 (61)
41 KOG2739 Leucine-rich acidic nu 97.2 0.00012 2.5E-09 57.4 1.0 85 139-226 64-151 (260)
42 PF13855 LRR_8: Leucine rich r 97.2 1.9E-05 4.2E-10 48.4 -3.1 11 191-201 48-58 (61)
43 KOG2739 Leucine-rich acidic nu 97.1 8.1E-05 1.8E-09 58.3 -0.6 110 139-254 42-153 (260)
44 PLN03150 hypothetical protein; 97.1 0.00098 2.1E-08 60.4 6.2 61 164-228 440-500 (623)
45 KOG1859 Leucine-rich repeat pr 97.1 0.00022 4.9E-09 63.6 1.4 78 164-253 185-263 (1096)
46 PLN03150 hypothetical protein; 96.7 0.003 6.4E-08 57.4 5.8 108 116-230 420-527 (623)
47 KOG2123 Uncharacterized conser 96.6 0.00077 1.7E-08 53.6 1.2 13 215-227 85-97 (388)
48 KOG1259 Nischarin, modulator o 96.6 0.0012 2.6E-08 53.2 2.2 127 81-229 281-410 (490)
49 PF12799 LRR_4: Leucine Rich r 96.4 0.0033 7.1E-08 35.5 2.7 32 193-227 2-33 (44)
50 PF12799 LRR_4: Leucine Rich r 96.4 0.0037 8.1E-08 35.3 2.5 37 166-206 1-37 (44)
51 KOG4308 LRR-containing protein 96.2 0.0015 3.4E-08 56.9 0.8 144 81-229 112-273 (478)
52 KOG4658 Apoptotic ATPase [Sign 95.9 0.012 2.6E-07 55.4 4.7 13 138-150 569-581 (889)
53 KOG1859 Leucine-rich repeat pr 95.8 0.00088 1.9E-08 60.0 -2.6 36 191-227 253-288 (1096)
54 KOG4308 LRR-containing protein 95.7 0.0049 1.1E-07 53.9 1.4 147 85-238 145-309 (478)
55 PRK15387 E3 ubiquitin-protein 95.7 0.013 2.9E-07 54.1 4.2 14 218-232 342-355 (788)
56 KOG4658 Apoptotic ATPase [Sign 95.7 0.012 2.6E-07 55.3 4.0 107 138-251 543-649 (889)
57 KOG0281 Beta-TrCP (transducin 95.7 0.0051 1.1E-07 50.1 1.3 49 14-63 71-123 (499)
58 PRK15386 type III secretion pr 95.6 0.033 7.1E-07 47.5 5.8 73 81-175 49-121 (426)
59 PF13516 LRR_6: Leucine Rich r 95.4 0.017 3.8E-07 27.7 2.3 20 141-161 3-22 (24)
60 KOG4237 Extracellular matrix p 95.4 0.0031 6.8E-08 52.6 -0.7 44 80-129 87-130 (498)
61 PF13516 LRR_6: Leucine Rich r 95.4 0.014 3.1E-07 28.0 1.9 21 192-213 2-22 (24)
62 KOG1644 U2-associated snRNP A' 95.4 0.0074 1.6E-07 45.9 1.3 85 113-201 63-149 (233)
63 KOG1644 U2-associated snRNP A' 95.3 0.0082 1.8E-07 45.6 1.4 108 114-229 42-151 (233)
64 PRK15387 E3 ubiquitin-protein 95.3 0.015 3.3E-07 53.7 3.3 59 166-234 402-460 (788)
65 COG4886 Leucine-rich repeat (L 94.8 0.021 4.6E-07 48.8 2.7 36 214-253 251-286 (394)
66 KOG0617 Ras suppressor protein 94.1 0.00082 1.8E-08 49.7 -6.4 130 83-230 32-162 (264)
67 PRK15386 type III secretion pr 93.5 0.094 2E-06 44.8 3.8 72 112-201 50-121 (426)
68 KOG0617 Ras suppressor protein 93.4 0.0013 2.7E-08 48.8 -6.5 128 113-253 32-159 (264)
69 KOG2997 F-box protein FBX9 [Ge 93.2 0.04 8.6E-07 44.7 1.2 41 20-61 109-154 (366)
70 KOG3763 mRNA export factor TAP 93.0 0.2 4.4E-06 43.9 5.1 91 133-224 211-307 (585)
71 PRK15370 E3 ubiquitin-protein 93.0 0.12 2.7E-06 47.9 4.1 104 114-234 325-430 (754)
72 smart00368 LRR_RI Leucine rich 92.9 0.17 3.7E-06 25.3 2.9 21 141-162 3-23 (28)
73 PLN03215 ascorbic acid mannose 92.3 0.14 3E-06 43.1 3.3 38 16-54 3-41 (373)
74 KOG0472 Leucine-rich repeat pr 92.1 0.067 1.5E-06 45.1 1.1 37 191-230 504-540 (565)
75 KOG0472 Leucine-rich repeat pr 91.5 0.08 1.7E-06 44.7 0.9 108 81-203 432-539 (565)
76 smart00368 LRR_RI Leucine rich 91.4 0.36 7.9E-06 24.1 3.0 21 193-214 3-23 (28)
77 COG4886 Leucine-rich repeat (L 91.1 0.15 3.3E-06 43.5 2.4 123 115-252 141-263 (394)
78 KOG3763 mRNA export factor TAP 90.1 1 2.2E-05 39.7 6.2 87 110-198 214-307 (585)
79 KOG0531 Protein phosphatase 1, 89.9 0.12 2.5E-06 44.7 0.6 78 113-202 117-196 (414)
80 KOG4237 Extracellular matrix p 89.4 0.34 7.4E-06 40.9 2.9 87 137-229 271-357 (498)
81 PRK15370 E3 ubiquitin-protein 87.8 1.1 2.5E-05 41.7 5.5 88 114-213 346-435 (754)
82 KOG0531 Protein phosphatase 1, 87.2 0.22 4.8E-06 43.0 0.5 106 111-230 92-198 (414)
83 KOG4579 Leucine-rich repeat (L 86.8 0.25 5.4E-06 35.5 0.5 36 138-176 75-110 (177)
84 PF13504 LRR_7: Leucine rich r 83.4 0.9 1.9E-05 19.7 1.3 12 218-229 1-12 (17)
85 KOG4579 Leucine-rich repeat (L 80.7 1.6 3.4E-05 31.6 2.4 84 140-229 27-111 (177)
86 PF07723 LRR_2: Leucine Rich R 79.2 1.5 3.3E-05 21.4 1.4 25 194-218 2-26 (26)
87 PF13013 F-box-like_2: F-box-l 74.3 4.3 9.3E-05 27.9 3.1 27 20-46 23-50 (109)
88 PF13306 LRR_5: Leucine rich r 72.5 1 2.3E-05 31.4 -0.3 12 112-123 33-44 (129)
89 KOG0274 Cdc4 and related F-box 70.3 2.3 5E-05 38.1 1.3 47 13-59 103-149 (537)
90 PF00560 LRR_1: Leucine Rich R 61.5 5.1 0.00011 18.4 1.0 13 219-232 1-13 (22)
91 PF03382 DUF285: Mycoplasma pr 58.3 7.9 0.00017 27.0 2.0 11 163-174 58-68 (120)
92 KOG3735 Tropomodulin and leiom 53.8 54 0.0012 27.5 6.2 85 131-217 189-279 (353)
93 KOG1665 AFH1-interacting prote 48.3 15 0.00032 28.7 2.1 41 139-181 170-210 (302)
94 PF03382 DUF285: Mycoplasma pr 48.3 15 0.00034 25.5 2.1 87 134-226 5-93 (120)
95 smart00369 LRR_TYP Leucine-ric 47.3 18 0.0004 17.1 1.7 10 167-176 3-12 (26)
96 smart00370 LRR Leucine-rich re 47.3 18 0.0004 17.1 1.7 10 167-176 3-12 (26)
97 KOG1665 AFH1-interacting prote 37.2 12 0.00026 29.2 0.1 56 114-176 171-226 (302)
98 PF07735 FBA_2: F-box associat 36.0 1E+02 0.0022 18.7 5.5 53 167-225 12-69 (70)
99 PF03474 DMA: DMRTA motif; In 28.7 66 0.0014 17.5 2.1 24 23-46 4-28 (39)
100 KOG3735 Tropomodulin and leiom 27.3 2.6E+02 0.0057 23.6 6.2 88 155-244 187-280 (353)
101 PF09372 PRANC: PRANC domain; 27.1 51 0.0011 21.8 1.9 25 15-41 70-95 (97)
102 smart00446 LRRcap occurring C- 25.2 56 0.0012 16.0 1.3 15 213-227 8-22 (26)
103 smart00365 LRR_SD22 Leucine-ri 24.5 78 0.0017 15.4 1.8 9 193-201 3-11 (26)
104 KOG4242 Predicted myosin-I-bin 22.7 1E+02 0.0022 27.3 3.2 11 114-124 165-175 (553)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.94 E-value=1.9e-27 Score=192.30 Aligned_cols=228 Identities=21% Similarity=0.363 Sum_probs=156.5
Q ss_pred cCcHHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCceEeecccccchhhH-HHHHhcCccC-CCccEEeccCCCCC
Q 025143 20 ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNR-LVAALSIPRY-RHVREINLEFAQDI 97 (257)
Q Consensus 20 ~~~pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~~~-~~L~~L~l~~~~~~ 97 (257)
.+|||++..||++|+.+.+.+++++|+.|... +.++..|+++|+.......+. ++..++ .++ ..|++|.+.++..+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~-AlD~~~~q~idL~t~~rDv~g~VV~~~~-~Rcgg~lk~LSlrG~r~v 151 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKL-ALDGSCWQHIDLFTFQRDVDGGVVENMI-SRCGGFLKELSLRGCRAV 151 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-hhccccceeeehhcchhcCCCcceehHh-hhhccccccccccccccC
Confidence 55789999999999999999999999999765 999999999999887554322 223332 222 35667777776666
Q ss_pred chHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCC
Q 025143 98 EDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK 177 (257)
Q Consensus 98 ~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 177 (257)
.+..+..+...| |++++|.+.+|..+++..+..+++.|+.|++|.+..|..+++..+..+++.|++|++|+++.|+
T Consensus 152 ~~sslrt~~~~C----pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 152 GDSSLRTFASNC----PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred CcchhhHHhhhC----CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 666666666554 6777777777766677666666667777777777666666776666666677777777766666
Q ss_pred CCCHHHHHHHHhhCCC--------------------------CCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCC
Q 025143 178 NLLDKSLQLIADNYQE--------------------------LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGY 231 (257)
Q Consensus 178 ~l~~~~l~~l~~~~~~--------------------------L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~ 231 (257)
.+++.++..+.+++.. +-.+++..|..+||+++..+..+|.+|+.|+.++|..+
T Consensus 228 qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~ 307 (483)
T KOG4341|consen 228 QISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI 307 (483)
T ss_pred hhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC
Confidence 6666555555554444 44444445555666666666666666666666666666
Q ss_pred chHHHHHHHHhccccceeeccc
Q 025143 232 IMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 232 ~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|..+.......++|+.|.+..
T Consensus 308 ~d~~l~aLg~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 308 TDEVLWALGQHCHNLQVLELSG 329 (483)
T ss_pred chHHHHHHhcCCCceEEEeccc
Confidence 6666666666666666666554
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.3e-23 Score=160.83 Aligned_cols=226 Identities=21% Similarity=0.303 Sum_probs=146.8
Q ss_pred ccccCcH-HHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCceEeecccccchhhHHHHH------------------
Q 025143 17 WSKETVP-KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAA------------------ 77 (257)
Q Consensus 17 ~~~~~~p-e~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~l~~~~~~~~~~~~~------------------ 77 (257)
|.+ +| |++..||+.|..+++.+++-||++|++. ..+..+|..+|+.......+.....
T Consensus 98 ~~s--lpDEill~IFs~L~kk~LL~~~~VC~Rfyr~-~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~p 174 (419)
T KOG2120|consen 98 WDS--LPDEILLGIFSCLCKKELLKVSGVCKRFYRL-ASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQP 174 (419)
T ss_pred ccc--CCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-cccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCc
Confidence 655 56 6999999999999999999999999987 8999999999998754322111110
Q ss_pred -hcC---ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCccc
Q 025143 78 -LSI---PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRV 153 (257)
Q Consensus 78 -~~~---~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 153 (257)
++. ..-..|+.++++. ..++...+..+.+.| .+|+.|.|.|. .+++.....+++ -.+|++|+++.|.++
T Consensus 175 rlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C----~kLk~lSlEg~-~LdD~I~~~iAk-N~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 175 RLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQC----SKLKNLSLEGL-RLDDPIVNTIAK-NSNLVRLNLSMCSGF 247 (419)
T ss_pred hhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHH----Hhhhhcccccc-ccCcHHHHHHhc-cccceeecccccccc
Confidence 000 0012477788877 457777777777766 67777777765 566655555544 367777777777777
Q ss_pred CHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCC-CCCHHHHHHHHhcCCCCCeEecCCCCCCc
Q 025143 154 TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSGYI 232 (257)
Q Consensus 154 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~c~~~~ 232 (257)
+..++..+...|..|..|+++.|...++..-.++..--++|+.|+++||. ++.+..+.-+.+.||+|..|||++|..++
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 77777777777777777777777444443222223334566666666654 34555566666666666666666666666
Q ss_pred hHHHHHHHHhccccceeeccc
Q 025143 233 MMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 233 ~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+ +....+-+.+-|++|.++.
T Consensus 328 ~-~~~~~~~kf~~L~~lSlsR 347 (419)
T KOG2120|consen 328 N-DCFQEFFKFNYLQHLSLSR 347 (419)
T ss_pred c-hHHHHHHhcchheeeehhh
Confidence 5 3444444555666666554
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.79 E-value=4.6e-20 Score=149.77 Aligned_cols=213 Identities=22% Similarity=0.332 Sum_probs=134.9
Q ss_pred HHHHhhcHHHHHHHhcCCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhcc--------
Q 025143 39 ISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCL-------- 110 (257)
Q Consensus 39 ~~~~~v~~~w~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~-------- 110 (257)
..|..+-..-...+...++.|+++++..|...++..+++++ ..|++|++++++.|..++...++.+..+|.
T Consensus 172 ~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la-~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k 250 (483)
T KOG4341|consen 172 YGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA-EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK 250 (483)
T ss_pred hcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH-HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc
Confidence 33333333333334555666677777777777777777665 678888888888887777766666665541
Q ss_pred --------------CCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCC
Q 025143 111 --------------GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 176 (257)
Q Consensus 111 --------------~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 176 (257)
+.++-+.++++..|..++++.+..+...|..|+.|..++|..+++..+..++.++++|+.|.+++|
T Consensus 251 GC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c 330 (483)
T KOG4341|consen 251 GCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC 330 (483)
T ss_pred ccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc
Confidence 112334444444555555555555555666666666666666666666666667777777777777
Q ss_pred CCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeecc
Q 025143 177 KNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLL 252 (257)
Q Consensus 177 ~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~ 252 (257)
.++++.++..+..+|++|+.+++..|..++|..+..+..+||.|+.+.+++|..++|.++.....-.-.++.|...
T Consensus 331 ~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~l 406 (483)
T KOG4341|consen 331 QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVL 406 (483)
T ss_pred chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccccee
Confidence 6677777777777777777777777766666667777777777777777777777777655544433444444433
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.9e-16 Score=123.95 Aligned_cols=157 Identities=20% Similarity=0.387 Sum_probs=96.2
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCC----------
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN---------- 150 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~---------- 150 (257)
.+|.+|+.+.+.+ ..++|.....+++. .+|+.|+|+.|..++..++..+..+|..|..|++++|
T Consensus 207 s~C~kLk~lSlEg-~~LdD~I~~~iAkN-----~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 207 SQCSKLKNLSLEG-LRLDDPIVNTIAKN-----SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred HHHHhhhhccccc-cccCcHHHHHHhcc-----ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence 4445555555544 23444444444442 4455555555555555555544455555555555444
Q ss_pred ----------------c-ccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHH
Q 025143 151 ----------------V-RVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKI 213 (257)
Q Consensus 151 ----------------~-~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 213 (257)
. .+.+..+..+.+.||+|.+|+++.|..+++..+..+.+ ++-|++|++++|..+..+.+.+
T Consensus 281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~- 358 (419)
T KOG2120|consen 281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYDIIPETLLE- 358 (419)
T ss_pred HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeeehhhhcCCChHHeee-
Confidence 2 23334466666778888888888887777776677766 8888888888888777776666
Q ss_pred HhcCCCCCeEecCCCCCCchHHHHHHHHhccccc
Q 025143 214 LIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVR 247 (257)
Q Consensus 214 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~ 247 (257)
+..-|.|.+|++.|| +.|...+..-..+++|+
T Consensus 359 l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred eccCcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 455688888888775 45555666666666654
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.52 E-value=6.8e-14 Score=122.14 Aligned_cols=218 Identities=23% Similarity=0.303 Sum_probs=160.1
Q ss_pred CCChhhhHHHHhhcHHHHHHHhcCCCCceEeecccc-cch--hhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHh
Q 025143 32 RLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREM-NNA--GNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTK 108 (257)
Q Consensus 32 ~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~l~~~-~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 108 (257)
.|....+.++..+...+...+....+.+++++++.+ ... ....... ....+++|+.++++++..++|..+..++..
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLL-LLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhh-hhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 333444445666666555556778889999998862 111 1111122 236678999999999888999999999887
Q ss_pred ccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCC---CCCCHHH--
Q 025143 109 CLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC---KNLLDKS-- 183 (257)
Q Consensus 109 ~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~---~~l~~~~-- 183 (257)
| ++|+.|.+.+|..+++.++..++..|++|++|++++|..+++.++..++..|++|+.|.+..+ ..+++..
T Consensus 268 c----~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 268 C----PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred C----CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 5 899999999897789999999999999999999999999999999988888988777765543 2344433
Q ss_pred ----------HHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCC--------------CeEecCCCCCCchHHHHHH
Q 025143 184 ----------LQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL--------------RSLNLYALSGYIMMSQYLC 239 (257)
Q Consensus 184 ----------l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L--------------~~L~l~~c~~~~~~~~~~~ 239 (257)
.......|++++.+.+.+|. .++.++..+..+||+| +.|++..|...++..+...
T Consensus 344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~ 422 (482)
T KOG1947|consen 344 GLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCL 422 (482)
T ss_pred HhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHH
Confidence 33344568888888888876 7777766777777766 7888899888888877665
Q ss_pred HHhccccceeeccccc
Q 025143 240 IIFSLSVRISNLLDWL 255 (257)
Q Consensus 240 ~~~~~~L~~L~l~~~~ 255 (257)
.....+++.+++....
T Consensus 423 ~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 423 ADSCSNLKDLDLSGCR 438 (482)
T ss_pred hhhhhccccCCccCcc
Confidence 5545666666665543
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=4.6e-12 Score=104.91 Aligned_cols=188 Identities=23% Similarity=0.237 Sum_probs=105.9
Q ss_pred CCCceEeecccccch--hhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCC-CCccEEecCCCCCCChHHH
Q 025143 56 PSLWLVIDLREMNNA--GNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSL-QDLESLNLNGCQKISDKGI 132 (257)
Q Consensus 56 ~~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~-~~L~~L~L~~~~~~~~~~l 132 (257)
.+.+++++++++... ....+..+. .. ++|++|+++++ .+++.....+.... ..+ ++|+.|++.+| .++..+.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~-~~-~~L~~L~ls~~-~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n-~l~~~~~ 154 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLL-RS-SSLQELKLNNN-GLGDRGLRLLAKGL-KDLPPALEKLVLGRN-RLEGASC 154 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHh-cc-CcccEEEeeCC-ccchHHHHHHHHHH-HhCCCCceEEEcCCC-cCCchHH
Confidence 456777777765443 122222222 22 56777777764 35544444443332 223 67777777777 4553333
Q ss_pred HH---HHhcCCCCcEEEecCCcccCHHHHHHHHHc---CCCCCEEeccCCCCCCHHHHHHHHh---hCCCCCEEeccCCC
Q 025143 133 EI---ISSTCPELKVFSIYWNVRVTDIGIQHLVKN---CKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCV 203 (257)
Q Consensus 133 ~~---l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~ 203 (257)
.. ....+++|++|+++++ .+++.++..++.. +++|++|++++| .+++.....+.. .+++|++|++++|
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n- 231 (319)
T cd00116 155 EALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN- 231 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-
Confidence 22 2334567777777766 6666665555433 347777777776 566555444333 4667777777775
Q ss_pred CCCHHHHHHHHhcC----CCCCeEecCCCCCCchHHHHH---HHHhccccceeecc
Q 025143 204 KLTDGGLQKILIKC----SSLRSLNLYALSGYIMMSQYL---CIIFSLSVRISNLL 252 (257)
Q Consensus 204 ~l~~~~l~~l~~~~----~~L~~L~l~~c~~~~~~~~~~---~~~~~~~L~~L~l~ 252 (257)
.+++.++..+...+ ++|++|++++|. +++.+... .....++|+.+++.
T Consensus 232 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 232 NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECC
Confidence 57766666665553 577777777763 44333222 22333455555544
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.43 E-value=7.8e-13 Score=115.47 Aligned_cols=137 Identities=30% Similarity=0.496 Sum_probs=61.6
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecC-CcccCHHH--HHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhh
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYW-NVRVTDIG--IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 190 (257)
++|+.+.+.+|..+.+.++..+...+++|+.|++++ +......+ ...++..|++|++|++++|..++|.++.++...
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 444555444444444444444444445555555443 11111111 222333444455555554433444444444444
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceee
Q 025143 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISN 250 (257)
Q Consensus 191 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~ 250 (257)
|++|++|.+.+|..+++.++..+...|+.|++|++++|..++|.++.......++++.|.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 445555554444444445555544444445555555544444444433344444444433
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=2.3e-11 Score=100.69 Aligned_cols=190 Identities=23% Similarity=0.216 Sum_probs=132.3
Q ss_pred CCceEeecccccchhhHHHH-HhcCccC-CCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVA-ALSIPRY-RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~-~~~~~~~-~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ 134 (257)
+.+++++++.+......... ......+ ++|+.++++++. ++......+.... ..+++|++|++.++ .+.+.++..
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~ 184 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKAL-RANRDLKELNLANN-GIGDAGIRA 184 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHH-HhCCCcCEEECcCC-CCchHHHHH
Confidence 66999999987543222111 1112456 899999999964 5544444443332 33578999999998 778777665
Q ss_pred HHh---cCCCCcEEEecCCcccCHHHHHHHH---HcCCCCCEEeccCCCCCCHHHHHHHHhhC----CCCCEEeccCCCC
Q 025143 135 ISS---TCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIADNY----QELESLNLTRCVK 204 (257)
Q Consensus 135 l~~---~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~l~~l~~~~----~~L~~L~l~~~~~ 204 (257)
+.. .+++|+.|++++| .+++.++..++ ..+++|++|++++| .+++..+..+...+ +.|++|++++| .
T Consensus 185 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~ 261 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-D 261 (319)
T ss_pred HHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-C
Confidence 544 3469999999988 77777765544 46789999999998 78888888777754 79999999997 6
Q ss_pred CCHHHHHHHHh---cCCCCCeEecCCCCCCchHHHHHHH----Hhccccceeeccc
Q 025143 205 LTDGGLQKILI---KCSSLRSLNLYALSGYIMMSQYLCI----IFSLSVRISNLLD 253 (257)
Q Consensus 205 l~~~~l~~l~~---~~~~L~~L~l~~c~~~~~~~~~~~~----~~~~~L~~L~l~~ 253 (257)
+++.+...+.. .+++|++++++++ .+++.+..... ...+.++.+++.+
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 87666655544 4578999999995 56666433322 2225677777654
No 9
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.2e-11 Score=98.67 Aligned_cols=182 Identities=17% Similarity=0.088 Sum_probs=97.5
Q ss_pred CCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCC--CchHHHHHHHHhccCCCCCccEEecCCCCCCChHHH
Q 025143 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQD--IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI 132 (257)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l 132 (257)
..++.+.+|++..-......+..++ .++|+|+.|+++...- ..+..... .++.|+.|.|+.| .+++..+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~-eqLp~Le~LNls~Nrl~~~~~s~~~~-------~l~~lK~L~l~~C-Gls~k~V 214 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIA-EQLPSLENLNLSSNRLSNFISSNTTL-------LLSHLKQLVLNSC-GLSWKDV 214 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHH-HhcccchhcccccccccCCccccchh-------hhhhhheEEeccC-CCCHHHH
Confidence 3455666666654444444444443 5666666666654311 01111111 1356667777766 6666666
Q ss_pred HHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHH
Q 025143 133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQK 212 (257)
Q Consensus 133 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~ 212 (257)
..+...||+|+.|.+.++..+....... +.+..|+.|+|+++..++...+..... +|.|+.|+++.| ++++-....
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~-l~~L~~Lnls~t-gi~si~~~d 290 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGT-LPGLNQLNLSST-GIASIAEPD 290 (505)
T ss_pred HHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccccc-ccchhhhhcccc-CcchhcCCC
Confidence 6666667777777776553222111111 123457777777764444433344434 777888877775 343322211
Q ss_pred -----HHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceee
Q 025143 213 -----ILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISN 250 (257)
Q Consensus 213 -----l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~ 250 (257)
.....|+|++|++.. +.+.+....-....++||++|.
T Consensus 291 ~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 291 VESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhh
Confidence 134567888888877 4565555444556666777665
No 10
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.99 E-value=2.4e-09 Score=96.39 Aligned_cols=159 Identities=12% Similarity=0.146 Sum_probs=105.1
Q ss_pred cCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 025143 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (257)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (257)
...+|+.|++++.......+...+... +|.|++|.+.+. .+....+.++..++|+|..||++++ ++++- ..+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~----LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GI 191 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTM----LPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGI 191 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhh----CcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc--HHH
Confidence 345788888887666666666666655 488888888876 5666667788888888888888876 55432 222
Q ss_pred HHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHH----hcCCCCCeEecCCCCCCchHHHH
Q 025143 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKIL----IKCSSLRSLNLYALSGYIMMSQY 237 (257)
Q Consensus 162 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~----~~~~~L~~L~l~~c~~~~~~~~~ 237 (257)
..+++|+.|.+.+-.--+...+..++. +++|+.||+|+-....+....... ..+|+|+.||.++ ..+++..+.
T Consensus 192 -S~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le 268 (699)
T KOG3665|consen 192 -SRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILE 268 (699)
T ss_pred -hccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHH
Confidence 366777777777653233355667777 888888888875444433222211 1368888888887 567777666
Q ss_pred HHHHhccccceeec
Q 025143 238 LCIIFSLSVRISNL 251 (257)
Q Consensus 238 ~~~~~~~~L~~L~l 251 (257)
.....=++|+....
T Consensus 269 ~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 269 ELLNSHPNLQQIAA 282 (699)
T ss_pred HHHHhCccHhhhhh
Confidence 66665566665543
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=1.6e-08 Score=81.52 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=73.3
Q ss_pred CCCccEEecCCCCCCChHHH---HHHHhcCCCCcEEEecCCcccCHHHHHHH---HHcCCCCCEEeccCCCCCCHHHHHH
Q 025143 113 LQDLESLNLNGCQKISDKGI---EIISSTCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDLNLSGCKNLLDKSLQL 186 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~l~~ 186 (257)
-+.|+.+...++ .+.+.+. ....+.+|.|+.+++..+ .+..+|+..+ ..+||+|+.|++..+ .++.++-.+
T Consensus 156 ~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~ 232 (382)
T KOG1909|consen 156 KPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVA 232 (382)
T ss_pred CcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHH
Confidence 345555544443 3333222 222344566666666644 4554554322 246777777777775 455555555
Q ss_pred HHh---hCCCCCEEeccCCCCCCHHHHHHHHh----cCCCCCeEecCCCCCCchHH---HHHHHHhccccceeecc
Q 025143 187 IAD---NYQELESLNLTRCVKLTDGGLQKILI----KCSSLRSLNLYALSGYIMMS---QYLCIIFSLSVRISNLL 252 (257)
Q Consensus 187 l~~---~~~~L~~L~l~~~~~l~~~~l~~l~~----~~~~L~~L~l~~c~~~~~~~---~~~~~~~~~~L~~L~l~ 252 (257)
+.+ .+|+|+.|++++| .+.+.|..+++. ..|+|+.|.+.+|. ++-.+ +......-+.|..|++.
T Consensus 233 LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred HHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCC
Confidence 444 3567777777777 466666655543 35777777777743 43332 22233334555555554
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.4e-10 Score=92.28 Aligned_cols=183 Identities=15% Similarity=0.051 Sum_probs=115.7
Q ss_pred CceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh
Q 025143 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (257)
Q Consensus 58 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 137 (257)
.++++.+.++.......-.. ...|++++.|+++..-.-.-..+..++++ +|+|+.|+|+.+ .+....-.....
T Consensus 122 kL~~IsLdn~~V~~~~~~~~--~k~~~~v~~LdLS~NL~~nw~~v~~i~eq----Lp~Le~LNls~N-rl~~~~~s~~~~ 194 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEY--SKILPNVRDLDLSRNLFHNWFPVLKIAEQ----LPSLENLNLSSN-RLSNFISSNTTL 194 (505)
T ss_pred hhhheeecCccccccchhhh--hhhCCcceeecchhhhHHhHHHHHHHHHh----cccchhcccccc-cccCCccccchh
Confidence 45566666654321111111 26788999999987543344555666665 499999998765 222111111122
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCH-HHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhc
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 216 (257)
.+++|+.|.+++| +++...+..+...+|.|+.|++.++..+.. ..-. +.+..|+.|+|++++.++.+ .......
T Consensus 195 ~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~-~~~~~~~ 269 (505)
T KOG3207|consen 195 LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFD-QGYKVGT 269 (505)
T ss_pred hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh---hhhhHHhhccccCCcccccc-ccccccc
Confidence 5688999999999 888888999888999999999998732221 1111 12457899999996555443 3334667
Q ss_pred CCCCCeEecCCCCCCchHHH-----HHHHHhccccceeeccc
Q 025143 217 CSSLRSLNLYALSGYIMMSQ-----YLCIIFSLSVRISNLLD 253 (257)
Q Consensus 217 ~~~L~~L~l~~c~~~~~~~~-----~~~~~~~~~L~~L~l~~ 253 (257)
+|.|+.|+++.|. +.+... -......++|+.|++.+
T Consensus 270 l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 270 LPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred ccchhhhhccccC-cchhcCCCccchhhhcccccceeeeccc
Confidence 8999999988854 433322 22356667888887654
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.90 E-value=3.4e-08 Score=79.63 Aligned_cols=190 Identities=19% Similarity=0.211 Sum_probs=105.7
Q ss_pred CCCCceEeecccccch--hhHHHHHh-----cCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCC
Q 025143 55 YPSLWLVIDLREMNNA--GNRLVAAL-----SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKI 127 (257)
Q Consensus 55 ~~~~~~~l~l~~~~~~--~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~ 127 (257)
.-+.++..++++.... .+.+..++ ....+|+|+.++||+. .+...++..+.... ..+..|++|.|.+| .+
T Consensus 56 ~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G~~g~~~l~~ll-~s~~~L~eL~L~N~-Gl 132 (382)
T KOG1909|consen 56 SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFGPKGIRGLEELL-SSCTDLEELYLNNC-GL 132 (382)
T ss_pred hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-ccCccchHHHHHHH-HhccCHHHHhhhcC-CC
Confidence 3346777777765432 22222211 1256678888888873 34443333332211 12478888888887 55
Q ss_pred ChHHHHHHH------------hcCCCCcEEEecCCcccCHHHHHHHH---HcCCCCCEEeccCCCCCCHHHHHHHHh---
Q 025143 128 SDKGIEIIS------------STCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIAD--- 189 (257)
Q Consensus 128 ~~~~l~~l~------------~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~l~~l~~--- 189 (257)
...+=..++ ..-+.|+.+..+.+ .+.+.+...++ +.++.|+.+.+..+ .+..+++..+..
T Consensus 133 g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~ 210 (382)
T KOG1909|consen 133 GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALE 210 (382)
T ss_pred ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHH
Confidence 544333222 13467888877755 55555544443 45567888887775 455555533332
Q ss_pred hCCCCCEEeccCCCCCCHHHHHHHHh---cCCCCCeEecCCCCCCchHHHHH---HHHhccccceee
Q 025143 190 NYQELESLNLTRCVKLTDGGLQKILI---KCSSLRSLNLYALSGYIMMSQYL---CIIFSLSVRISN 250 (257)
Q Consensus 190 ~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~c~~~~~~~~~~---~~~~~~~L~~L~ 250 (257)
+||+|+.||++.+ .++..+-.++.. ..|+|++|++++|..-+.....+ .....++|+.+.
T Consensus 211 ~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~ 276 (382)
T KOG1909|consen 211 HCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLE 276 (382)
T ss_pred hCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceec
Confidence 5888888888774 566555554443 44678888888876444333222 223334555554
No 14
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.80 E-value=1e-08 Score=97.26 Aligned_cols=83 Identities=14% Similarity=0.010 Sum_probs=36.1
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhc
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFS 243 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 243 (257)
.+++|++|++++| .++......+.. +++|++|+++++ .+++. +...+.++++|++|++++|..... ....+...
T Consensus 186 ~l~~L~~L~L~~n-~l~~~~p~~l~~-l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l 259 (968)
T PLN00113 186 NLTSLEFLTLASN-QLVGQIPRELGQ-MKSLKWIYLGYN-NLSGE-IPYEIGGLTSLNHLDLVYNNLTGP--IPSSLGNL 259 (968)
T ss_pred hCcCCCeeeccCC-CCcCcCChHHcC-cCCccEEECcCC-ccCCc-CChhHhcCCCCCEEECcCceeccc--cChhHhCC
Confidence 3445555555554 222222222222 555555555553 23321 122234556666666666432111 11233445
Q ss_pred cccceeecc
Q 025143 244 LSVRISNLL 252 (257)
Q Consensus 244 ~~L~~L~l~ 252 (257)
++|+.|++.
T Consensus 260 ~~L~~L~L~ 268 (968)
T PLN00113 260 KNLQYLFLY 268 (968)
T ss_pred CCCCEEECc
Confidence 566666554
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.79 E-value=3.6e-09 Score=61.45 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=34.7
Q ss_pred CcHHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCceEeec
Q 025143 21 TVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (257)
Q Consensus 21 ~~pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~l 64 (257)
+|+|++..||++|+..|+.+++.|||+|++. +.+...|+++.+
T Consensus 4 LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~-~~~~~lW~~~~~ 46 (47)
T PF12937_consen 4 LPDEILLEIFSYLDPRDLLRLSLVCRRWRRI-ANDNSLWRRLCL 46 (47)
T ss_dssp S-HHHHHHHHTTS-HHHHHHHTTSSHHHHHH-HTCCCHHHHHC-
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HCChhhhhhhcc
Confidence 3458999999999999999999999999988 555588987654
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.75 E-value=2.1e-08 Score=95.14 Aligned_cols=84 Identities=21% Similarity=0.066 Sum_probs=42.2
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhc
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFS 243 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 243 (257)
.+++|++|++++| .++......+.. +++|++|++++| .++.. +...+.++++|++|++++|.. .+. +...+...
T Consensus 210 ~l~~L~~L~L~~n-~l~~~~p~~l~~-l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l-~~~-~p~~l~~l 283 (968)
T PLN00113 210 QMKSLKWIYLGYN-NLSGEIPYEIGG-LTSLNHLDLVYN-NLTGP-IPSSLGNLKNLQYLFLYQNKL-SGP-IPPSIFSL 283 (968)
T ss_pred CcCCccEEECcCC-ccCCcCChhHhc-CCCCCEEECcCc-eeccc-cChhHhCCCCCCEEECcCCee-ecc-CchhHhhc
Confidence 4566667776665 343332233333 666777777664 33322 222345566677777666432 211 11123345
Q ss_pred cccceeeccc
Q 025143 244 LSVRISNLLD 253 (257)
Q Consensus 244 ~~L~~L~l~~ 253 (257)
++|+.|++++
T Consensus 284 ~~L~~L~Ls~ 293 (968)
T PLN00113 284 QKLISLDLSD 293 (968)
T ss_pred cCcCEEECcC
Confidence 5666666543
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.75 E-value=3.2e-08 Score=89.19 Aligned_cols=134 Identities=18% Similarity=0.224 Sum_probs=101.4
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
-.+|++|++.|...+.......++..+|+|++|.+++- .+..+.+..+..++|+|..||++++ ++++ +..+.+ ++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n--l~GIS~-Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISN--LSGISR-LK 195 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccC--cHHHhc-cc
Confidence 47999999999877877888889999999999999976 5555558888899999999999997 7777 444555 99
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHH-HHH---HHHhccccceeecc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMS-QYL---CIIFSLSVRISNLL 252 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~-~~~---~~~~~~~L~~L~l~ 252 (257)
+|+.|.+.+-.--+...+..++ ++++|+.||++.-....+.. +.. .-..+++|+.||-+
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 9999999886544446677754 78999999998855544441 111 12235677777654
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=1.5e-08 Score=75.74 Aligned_cols=105 Identities=27% Similarity=0.382 Sum_probs=33.3
Q ss_pred CCCccEEecCCCCCCCh-HHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCH-HHHHHHHhh
Q 025143 113 LQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADN 190 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l~~~ 190 (257)
+.+|+.|+++++ .+.. +++ ..+++|++|+++++ .++.-+ ..+...+|+|++|+++++ .+.+ ..+..+. .
T Consensus 41 l~~L~~L~Ls~N-~I~~l~~l----~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~-~ 111 (175)
T PF14580_consen 41 LDKLEVLDLSNN-QITKLEGL----PGLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSNN-KISDLNELEPLS-S 111 (175)
T ss_dssp -TT--EEE-TTS---S--TT--------TT--EEE--SS----S-C-HHHHHH-TT--EEE-TTS----SCCCCGGGG-G
T ss_pred hcCCCEEECCCC-CCccccCc----cChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcCC-cCCChHHhHHHH-c
Confidence 356666666665 3322 222 13466666666644 444321 112234566666666664 3332 1223333 3
Q ss_pred CCCCCEEeccCCCCCCH-H-HHHHHHhcCCCCCeEecCC
Q 025143 191 YQELESLNLTRCVKLTD-G-GLQKILIKCSSLRSLNLYA 227 (257)
Q Consensus 191 ~~~L~~L~l~~~~~l~~-~-~l~~l~~~~~~L~~L~l~~ 227 (257)
+|+|++|++.+++ +++ . .-..++..+|+|+.||-..
T Consensus 112 l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 112 LPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 6666666666643 221 1 1222344566666665533
No 19
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=1.4e-07 Score=70.75 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=66.1
Q ss_pred CccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCC
Q 025143 115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 194 (257)
Q Consensus 115 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L 194 (257)
.++.++=+++ .+..+++.++. .++.++.|.+..|.++.|.++..++.-.++|+.|++++|+++|+.++.-+.+ +++|
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNL 178 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhh
Confidence 3456666665 66777777763 4677888888888888888888877777788888888888888888777777 7888
Q ss_pred CEEeccCCCCCCH
Q 025143 195 ESLNLTRCVKLTD 207 (257)
Q Consensus 195 ~~L~l~~~~~l~~ 207 (257)
+.|.+.+-+.+..
T Consensus 179 r~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 179 RRLHLYDLPYVAN 191 (221)
T ss_pred HHHHhcCchhhhc
Confidence 8888877554443
No 20
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1.3e-07 Score=70.89 Aligned_cols=92 Identities=29% Similarity=0.481 Sum_probs=80.2
Q ss_pred CCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 025143 141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL 220 (257)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L 220 (257)
.++.++-+++ .+..+|+..+. .++.++.|.+..|.++.|.++..+..-.|+|+.|+|++|++||+.++.. +..+++|
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNL 178 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhh
Confidence 4567777766 88999999985 8899999999999999999999999988999999999999999999988 4577999
Q ss_pred CeEecCCCCCCchHH
Q 025143 221 RSLNLYALSGYIMMS 235 (257)
Q Consensus 221 ~~L~l~~c~~~~~~~ 235 (257)
+.|.+.+-+.+....
T Consensus 179 r~L~l~~l~~v~~~e 193 (221)
T KOG3864|consen 179 RRLHLYDLPYVANLE 193 (221)
T ss_pred HHHHhcCchhhhchH
Confidence 999998877765443
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.34 E-value=1.2e-06 Score=84.33 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=7.3
Q ss_pred hcCCCCCeEecCCCCC
Q 025143 215 IKCSSLRSLNLYALSG 230 (257)
Q Consensus 215 ~~~~~L~~L~l~~c~~ 230 (257)
.++++|+.|++++|..
T Consensus 799 ~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 799 QNLHKLEHLEIENCIN 814 (1153)
T ss_pred hCCCCCCEEECCCCCC
Confidence 3444444444444443
No 22
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.30 E-value=1.6e-07 Score=80.87 Aligned_cols=134 Identities=22% Similarity=0.168 Sum_probs=66.3
Q ss_pred cCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHh
Q 025143 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (257)
Q Consensus 110 ~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 189 (257)
..++..|+.|+++.+ .+.......+ ..+++|+.|+|+.+ .++.-.-..+ ..+.+|+.|.++++ .++.-. ...+.
T Consensus 289 lfgLt~L~~L~lS~N-aI~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~N-si~~l~-e~af~ 362 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYN-AIQRIHIDSW-SFTQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSHN-SIDHLA-EGAFV 362 (873)
T ss_pred ccccchhhhhccchh-hhheeecchh-hhcccceeEecccc-ccccCChhHH-HHHHHhhhhccccc-chHHHH-hhHHH
Confidence 344566666666654 3333333333 24677778877754 3332221222 13446666766664 333211 11122
Q ss_pred hCCCCCEEeccCCC--C-CCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 190 NYQELESLNLTRCV--K-LTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 190 ~~~~L~~L~l~~~~--~-l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
...+|+.||++++. + +.| + ...+.+++.|+.|++.| +++....- ..+....+|++|+|.|
T Consensus 363 ~lssL~~LdLr~N~ls~~IED-a-a~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIED-A-AVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGD 425 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEec-c-hhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCC
Confidence 35667777776632 1 122 2 22245567777777766 44443322 1344556666666654
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.26 E-value=2.9e-07 Score=68.92 Aligned_cols=131 Identities=25% Similarity=0.274 Sum_probs=49.8
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
..++++|+|.++ .++. ++.+...+.+|+.|+++++ .++. +..+ ..+++|+.|+++++ .+++-. ..+...+|
T Consensus 18 ~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~l-~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNN-QITK--LEGL-PGLPRLKTLDLSNN-RISSIS-EGLDKNLP 88 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS----S-C-HHHHHH-T
T ss_pred cccccccccccc-cccc--ccchhhhhcCCCEEECCCC-CCcc--ccCc-cChhhhhhcccCCC-CCCccc-cchHHhCC
Confidence 457888999887 4443 3344445689999999977 5543 2223 25789999999997 666521 23444589
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHH-HHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMS-QYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~-~~~~~~~~~~L~~L~l~~ 253 (257)
+|++|.++++ .+.+-.-..-+..+|+|++|++.+.+-..... ....+...++|+.||--+
T Consensus 89 ~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 89 NLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp T--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999999884 56542222224578999999999965443332 444667778888887543
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.21 E-value=2.3e-06 Score=82.44 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=33.9
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCc
Q 025143 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYI 232 (257)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~ 232 (257)
++|+.|+++++ .++. +..-...+++|+.|++++|+.+.. +..-...+++|+.+++++|..++
T Consensus 846 ~nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 846 TNISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence 34555555553 3332 122223367777777777766653 33334456677777777776654
No 25
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.16 E-value=2.6e-06 Score=47.60 Aligned_cols=38 Identities=16% Similarity=0.391 Sum_probs=32.7
Q ss_pred cHHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCce
Q 025143 22 VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWL 60 (257)
Q Consensus 22 ~pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~ 60 (257)
++|++..||.+++..|+.+++.||+.|+.. ...+..|+
T Consensus 2 P~~ll~~I~~~l~~~d~~~~~~vc~~~~~~-~~~~~~~~ 39 (41)
T smart00256 2 PDEILEEILSKLPPKDLLRLRKVSRRWRSL-IDSHDFWF 39 (41)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hcChhhhh
Confidence 358999999999999999999999999887 56656665
No 26
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.03 E-value=0.00028 Score=55.81 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=109.5
Q ss_pred CCceEeecccccchhhHHHHHhc--CccCCCccEEeccCCC--CCchHHHHHH--HHhccCCCCCccEEecCCCCCCCh-
Q 025143 57 SLWLVIDLREMNNAGNRLVAALS--IPRYRHVREINLEFAQ--DIEDRHLELL--KTKCLGSLQDLESLNLNGCQKISD- 129 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~--~~~~~~l~~l--~~~~~~~~~~L~~L~L~~~~~~~~- 129 (257)
.-..++++++......+. .+++ ++.-.+|+..+++... ...+.....+ ...+.-.||+|+..+|+.+ .+..
T Consensus 30 d~~~evdLSGNtigtEA~-e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAM-EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGSE 107 (388)
T ss_pred cceeEEeccCCcccHHHH-HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCcc
Confidence 357889999865543322 2221 2455678888877532 2223222222 1122355799999999876 4433
Q ss_pred --HHHHHHHhcCCCCcEEEecCCcccCHHHHHHH------------HHcCCCCCEEeccCCC--CCCHHHHHHHHhhCCC
Q 025143 130 --KGIEIISSTCPELKVFSIYWNVRVTDIGIQHL------------VKNCKHIIDLNLSGCK--NLLDKSLQLIADNYQE 193 (257)
Q Consensus 130 --~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l------------~~~~~~L~~L~l~~~~--~l~~~~l~~l~~~~~~ 193 (257)
+.+..+......|++|.+++| ++...+-..| ++.-|.|+....+.+. +.+-....+..+.-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 334455566789999999877 5543322222 2345678888777752 2233334444444457
Q ss_pred CCEEeccCCCCCCHHHHHHHH----hcCCCCCeEecCCCCCCchH-HHHH--HHHhccccceeecccc
Q 025143 194 LESLNLTRCVKLTDGGLQKIL----IKCSSLRSLNLYALSGYIMM-SQYL--CIIFSLSVRISNLLDW 254 (257)
Q Consensus 194 L~~L~l~~~~~l~~~~l~~l~----~~~~~L~~L~l~~c~~~~~~-~~~~--~~~~~~~L~~L~l~~~ 254 (257)
|+.+.+-. +.+.++++..++ ..|.+|+.||+.+. ..+-. +.+. .....+.|+.|++.|+
T Consensus 187 lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 187 LKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred ceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccch
Confidence 77777766 467766666543 35677888888773 34333 3333 2223355677777765
No 27
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.94 E-value=2.9e-06 Score=73.30 Aligned_cols=129 Identities=22% Similarity=0.205 Sum_probs=71.3
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
..+|+.|+|..+ .++...-+.+ +..|.|+.|+|+.+ .++.--...+. +-+++++|+++++ .+++-....+.. +.
T Consensus 124 sghl~~L~L~~N-~I~sv~se~L-~~l~alrslDLSrN-~is~i~~~sfp-~~~ni~~L~La~N-~It~l~~~~F~~-ln 197 (873)
T KOG4194|consen 124 SGHLEKLDLRHN-LISSVTSEEL-SALPALRSLDLSRN-LISEIPKPSFP-AKVNIKKLNLASN-RITTLETGHFDS-LN 197 (873)
T ss_pred ccceeEEeeecc-ccccccHHHH-HhHhhhhhhhhhhc-hhhcccCCCCC-CCCCceEEeeccc-cccccccccccc-cc
Confidence 355667766654 3333222222 23466777777654 33322111111 2246888888886 677655555544 66
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeec
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNL 251 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l 251 (257)
+|..|.+++ ++++--... .+..+|+|+.|+|.. +.+... ....++.+.+|+.|.+
T Consensus 198 sL~tlkLsr-NrittLp~r-~Fk~L~~L~~LdLnr-N~iriv-e~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 198 SLLTLKLSR-NRITTLPQR-SFKRLPKLESLDLNR-NRIRIV-EGLTFQGLPSLQNLKL 252 (873)
T ss_pred hheeeeccc-CcccccCHH-Hhhhcchhhhhhccc-cceeee-hhhhhcCchhhhhhhh
Confidence 788888887 466643333 356688888888866 333322 2234455566665544
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.93 E-value=2e-06 Score=77.78 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=80.3
Q ss_pred CccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCC--CCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 025143 85 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC--QKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (257)
Q Consensus 85 ~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~--~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (257)
.|+.|.+.+ ..++|..+..+. +.++|+.|+|++. ..+++..+ .+++.|++|.++|+ .++.-. ..+
T Consensus 360 ~Lq~Lylan-N~Ltd~c~p~l~-----~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGN-kL~~Lp-~tv- 426 (1081)
T KOG0618|consen 360 ALQELYLAN-NHLTDSCFPVLV-----NFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGN-KLTTLP-DTV- 426 (1081)
T ss_pred HHHHHHHhc-Ccccccchhhhc-----cccceeeeeecccccccCCHHHH----hchHHhHHHhcccc-hhhhhh-HHH-
Confidence 344444444 345565555543 3578888888876 22343332 35678888888876 444322 222
Q ss_pred HcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCC
Q 025143 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSG 230 (257)
Q Consensus 163 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ 230 (257)
..|+.|++|...++ ++.. +..+.. +|+|+.+|++. ++++...+.+...+ |+|++||++|..+
T Consensus 427 a~~~~L~tL~ahsN-~l~~--fPe~~~-l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSN-QLLS--FPELAQ-LPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HhhhhhHHHhhcCC-ceee--chhhhh-cCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 36777888877765 4433 445555 88999999976 57776666664434 7899999988654
No 29
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.84 E-value=5.5e-07 Score=78.41 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=18.6
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchH
Q 025143 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMM 234 (257)
Q Consensus 191 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~ 234 (257)
+.+|..+|++.+ +++ .++.-+-++++|+.|+|++ +.+++.
T Consensus 221 l~NL~dvDlS~N-~Lp--~vPecly~l~~LrrLNLS~-N~iteL 260 (1255)
T KOG0444|consen 221 LHNLRDVDLSEN-NLP--IVPECLYKLRNLRRLNLSG-NKITEL 260 (1255)
T ss_pred hhhhhhcccccc-CCC--cchHHHhhhhhhheeccCc-Cceeee
Confidence 445555555542 333 2333333445555555555 344433
No 30
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.82 E-value=0.00033 Score=55.47 Aligned_cols=171 Identities=16% Similarity=0.170 Sum_probs=94.5
Q ss_pred hcCCCCceEeecccccch--hhHHHH-----HhcCccCCCccEEeccCCCCCch---HHHHHHHHhccCCCCCccEEecC
Q 025143 53 VSYPSLWLVIDLREMNNA--GNRLVA-----ALSIPRYRHVREINLEFAQDIED---RHLELLKTKCLGSLQDLESLNLN 122 (257)
Q Consensus 53 ~~~~~~~~~l~l~~~~~~--~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~---~~l~~l~~~~~~~~~~L~~L~L~ 122 (257)
......++.++|+..... .+.+.. .....+||+|+..+++.. .+.. ..+..+.+. -..|.+|.++
T Consensus 54 ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~----~t~l~HL~l~ 128 (388)
T COG5238 54 IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGSEFPEELGDLISS----STDLVHLKLN 128 (388)
T ss_pred HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCcccchHHHHHHhc----CCCceeEEee
Confidence 444566777777765432 122221 112368899999999874 2322 233333332 2688999888
Q ss_pred CCCCCChH-------HHHHHHh-----cCCCCcEEEecCCcccCHHH---HHHHHHcCCCCCEEeccCCCCCCHHHHHHH
Q 025143 123 GCQKISDK-------GIEIISS-----TCPELKVFSIYWNVRVTDIG---IQHLVKNCKHIIDLNLSGCKNLLDKSLQLI 187 (257)
Q Consensus 123 ~~~~~~~~-------~l~~l~~-----~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 187 (257)
+| .+... ++.+++. .-|.|+...+..+ ++..-. .......-..|+.+.+.++ -+..+++..+
T Consensus 129 Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L 205 (388)
T COG5238 129 NN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTML 205 (388)
T ss_pred cC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHH
Confidence 87 44322 2333322 3477888777654 322111 1111222246777777775 4666554443
Q ss_pred Hh----hCCCCCEEeccCCCCCCHHHHHHHHhcC---CCCCeEecCCCCCCc
Q 025143 188 AD----NYQELESLNLTRCVKLTDGGLQKILIKC---SSLRSLNLYALSGYI 232 (257)
Q Consensus 188 ~~----~~~~L~~L~l~~~~~l~~~~l~~l~~~~---~~L~~L~l~~c~~~~ 232 (257)
.. .+++|+.|++..+ .+|-.+-..+...+ +.|+.|.+.+|-..+
T Consensus 206 ~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 206 AFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 32 4778888888773 56655555554432 557888888876544
No 31
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.81 E-value=7.8e-06 Score=47.47 Aligned_cols=36 Identities=28% Similarity=0.535 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCc
Q 025143 23 PKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLW 59 (257)
Q Consensus 23 pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~ 59 (257)
+|++.+||++|+..++.+++.||+.|++. +.....|
T Consensus 8 ~~il~~Il~~l~~~~~~~l~~vsk~~~~~-~~~~~~~ 43 (48)
T PF00646_consen 8 DEILQEILSYLDPKDLLRLSLVSKRWRSL-VDSPRLW 43 (48)
T ss_dssp HHHHHHHHHTS-HHHHHHHCTT-HHHHHH-HTTHHHH
T ss_pred HHHHHHHHHHCcHHHHHHHHHHhhHHHHH-HcCCCcc
Confidence 48999999999999999999999999987 4443333
No 32
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.75 E-value=7.2e-07 Score=77.72 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=56.2
Q ss_pred CCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 025143 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (257)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 219 (257)
.+|..++++.+ .++. +..-.-.+++|+.|+++++ .++.-. .-...+.+|+.|+++++ +++ .++.-.-.+++
T Consensus 222 ~NL~dvDlS~N-~Lp~--vPecly~l~~LrrLNLS~N-~iteL~--~~~~~W~~lEtLNlSrN-QLt--~LP~avcKL~k 292 (1255)
T KOG0444|consen 222 HNLRDVDLSEN-NLPI--VPECLYKLRNLRRLNLSGN-KITELN--MTEGEWENLETLNLSRN-QLT--VLPDAVCKLTK 292 (1255)
T ss_pred hhhhhcccccc-CCCc--chHHHhhhhhhheeccCcC-ceeeee--ccHHHHhhhhhhccccc-hhc--cchHHHhhhHH
Confidence 45555555532 3332 1111224567777777775 555422 11223667888888773 555 45554556677
Q ss_pred CCeEecCCCCCCchHHHHHHHHhcccccee
Q 025143 220 LRSLNLYALSGYIMMSQYLCIIFSLSVRIS 249 (257)
Q Consensus 220 L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L 249 (257)
|+.|.+.+ +.++-+++..++.++.+|..+
T Consensus 293 L~kLy~n~-NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 293 LTKLYANN-NKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred HHHHHhcc-CcccccCCccchhhhhhhHHH
Confidence 88777766 556666666666665555443
No 33
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.62 E-value=8.9e-05 Score=36.84 Aligned_cols=22 Identities=41% Similarity=0.806 Sum_probs=10.8
Q ss_pred CCCCEEeccCCCCCCHHHHHHH
Q 025143 192 QELESLNLTRCVKLTDGGLQKI 213 (257)
Q Consensus 192 ~~L~~L~l~~~~~l~~~~l~~l 213 (257)
|+|++|++++|..++|.++.++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4455555555545555554443
No 34
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=5.9e-05 Score=60.31 Aligned_cols=184 Identities=16% Similarity=0.105 Sum_probs=87.5
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
+..+++|+.......+.-+.++. .+.|.|+.|+++.. .+.. .+..+. ....+|+.|.|.|. .++........
T Consensus 71 ~~v~elDL~~N~iSdWseI~~il-e~lP~l~~LNls~N-~L~s-~I~~lp----~p~~nl~~lVLNgT-~L~w~~~~s~l 142 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAIL-EQLPALTTLNLSCN-SLSS-DIKSLP----LPLKNLRVLVLNGT-GLSWTQSTSSL 142 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHH-hcCccceEeeccCC-cCCC-ccccCc----ccccceEEEEEcCC-CCChhhhhhhh
Confidence 34555566654444333334432 67777777777753 2221 112211 11356777777664 56666555555
Q ss_pred hcCCCCcEEEecCCc----ccCHHH-----------------------HHHHHHcCCCCCEEeccCCCCCCHHHHHHHHh
Q 025143 137 STCPELKVFSIYWNV----RVTDIG-----------------------IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~----~~~~~~-----------------------~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 189 (257)
...|.++.|+++.+. .+.++. +..+.+.+|++..+.+..|+ +.+..-..-..
T Consensus 143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se 221 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSE 221 (418)
T ss_pred hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCC
Confidence 556666666665431 111111 22222333444444444431 22222222222
Q ss_pred hCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCc----hHHHHHHHHhccccceee
Q 025143 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYI----MMSQYLCIIFSLSVRISN 250 (257)
Q Consensus 190 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~----~~~~~~~~~~~~~L~~L~ 250 (257)
..|.+-.|+++. .++.+..-..-+.+.|.|..|.+.+.+... .+..++.+...++++.|+
T Consensus 222 ~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 222 PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 344555555555 345544333334566777777776644321 112333455555555554
No 35
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.41 E-value=0.00023 Score=35.29 Aligned_cols=24 Identities=46% Similarity=0.945 Sum_probs=14.4
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHH
Q 025143 165 CKHIIDLNLSGCKNLLDKSLQLIA 188 (257)
Q Consensus 165 ~~~L~~L~l~~~~~l~~~~l~~l~ 188 (257)
|++|++|++++|.+++|.++.++.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 455666666666666666665554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.33 E-value=0.00015 Score=58.23 Aligned_cols=103 Identities=22% Similarity=0.212 Sum_probs=45.8
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 025143 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (257)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 218 (257)
.|.++.|+++++ ++.. +..+ +.+++|++|+++++ .++. +......+-+++.|.++++ .+. .+.- +..+-
T Consensus 306 ~Pkir~L~lS~N-~i~~--v~nL-a~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGNIKtL~La~N-~iE--~LSG-L~KLY 374 (490)
T KOG1259|consen 306 APKLRRLILSQN-RIRT--VQNL-AELPQLQLLDLSGN-LLAE--CVGWHLKLGNIKTLKLAQN-KIE--TLSG-LRKLY 374 (490)
T ss_pred ccceeEEecccc-ceee--ehhh-hhcccceEeecccc-hhHh--hhhhHhhhcCEeeeehhhh-hHh--hhhh-hHhhh
Confidence 366666666654 3322 2222 24566666666664 2221 1222222445555555542 111 1111 11223
Q ss_pred CCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 219 SLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 219 ~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
.|.+||+++ +.+...-.-..+...++|.++.+.+
T Consensus 375 SLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 375 SLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hheeccccc-cchhhHHHhcccccccHHHHHhhcC
Confidence 466666666 3444333333455556666655543
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.00022 Score=57.14 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=51.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 193 (257)
..++.++|.++.--.+..+..+...+|.|+.|.++.+ .+.. .+..+.....+|+.|-+.|. .++...+..+...+|.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEEEEEcCC-CCChhhhhhhhhcchh
Confidence 6677777766533344566666667777777777743 3332 13333223346777777774 6666666666666777
Q ss_pred CCEEeccCC
Q 025143 194 LESLNLTRC 202 (257)
Q Consensus 194 L~~L~l~~~ 202 (257)
++.|.++.+
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777766553
No 38
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.29 E-value=0.00016 Score=65.85 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=73.6
Q ss_pred ccCCCccEEeccCC--CCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHH
Q 025143 81 PRYRHVREINLEFA--QDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI 158 (257)
Q Consensus 81 ~~~~~L~~L~l~~~--~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 158 (257)
..+++||.|++++. ..+.+..+.. ++.|++|+|+|. .+..-. .-...|+.|++|...++ .+. .+
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~k--------le~LeeL~LSGN-kL~~Lp--~tva~~~~L~tL~ahsN-~l~--~f 445 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRK--------LEELEELNLSGN-KLTTLP--DTVANLGRLHTLRAHSN-QLL--SF 445 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhc--------hHHhHHHhcccc-hhhhhh--HHHHhhhhhHHHhhcCC-cee--ec
Confidence 57789999999985 3344554444 488999999997 554332 22345788888888755 222 13
Q ss_pred HHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCC
Q 025143 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVK 204 (257)
Q Consensus 159 ~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~ 204 (257)
..++ ..++|+.+|++.+ +++...+.+... .|+|++||++|+.+
T Consensus 446 Pe~~-~l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 446 PELA-QLPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhh-hcCcceEEecccc-hhhhhhhhhhCC-CcccceeeccCCcc
Confidence 3444 6789999999886 777655554433 48999999999764
No 39
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=9.4e-05 Score=58.62 Aligned_cols=112 Identities=22% Similarity=0.324 Sum_probs=74.1
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCH-HHHHHHHhhC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNY 191 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l~~~~ 191 (257)
+.+.++|+..|| .+++..+ ...+|.|+.|.|+-+ .++. +..+ ..|.+|+.|+|..+ .+.+ +.+.++ +++
T Consensus 18 l~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvN-kIss--L~pl-~rCtrLkElYLRkN-~I~sldEL~YL-knl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVN-KISS--LAPL-QRCTRLKELYLRKN-CIESLDELEYL-KNL 87 (388)
T ss_pred HHHhhhhcccCC-CccHHHH---HHhcccceeEEeecc-cccc--chhH-HHHHHHHHHHHHhc-ccccHHHHHHH-hcC
Confidence 467788898888 7777543 356899999999844 4442 4444 47899999999886 5555 334444 459
Q ss_pred CCCCEEeccCCCCC---CHHHHHHHHhcCCCCCeEecCCCCCCchHHHH
Q 025143 192 QELESLNLTRCVKL---TDGGLQKILIKCSSLRSLNLYALSGYIMMSQY 237 (257)
Q Consensus 192 ~~L~~L~l~~~~~l---~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~ 237 (257)
|+|+.|-|..++-. ....=..+++-+|+|+.||= ..++.+-..
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle 133 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELE 133 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHH
Confidence 99999999764422 22233345677899999865 335554443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.22 E-value=1.6e-05 Score=48.77 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=16.2
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025143 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYAL 228 (257)
Q Consensus 191 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 228 (257)
+++|++|+++++ .++.-.- ..+.++++|++|+++++
T Consensus 24 l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 24 LPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp GTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSS
T ss_pred CCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCC
Confidence 455555555543 3332111 12345555555555553
No 41
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00012 Score=57.40 Aligned_cols=85 Identities=28% Similarity=0.417 Sum_probs=40.7
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCH-HHHHHHHhhCCCCCEEeccCCC--CCCHHHHHHHHh
Q 025143 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRCV--KLTDGGLQKILI 215 (257)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l~~~~~~L~~L~l~~~~--~l~~~~l~~l~~ 215 (257)
+|+|+.|.++.+..-...++..++..+|+|++|+++++ .+.+ .++..+.+ +++|..|++.+|. ++++..-+ ++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~-l~nL~~Ldl~n~~~~~l~dyre~-vf~ 140 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKE-LENLKSLDLFNCSVTNLDDYREK-VFL 140 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhh-hcchhhhhcccCCccccccHHHH-HHH
Confidence 45666666664322222344555555666666666665 3442 22233323 5566666666554 22222211 233
Q ss_pred cCCCCCeEecC
Q 025143 216 KCSSLRSLNLY 226 (257)
Q Consensus 216 ~~~~L~~L~l~ 226 (257)
-+|+|++|+-.
T Consensus 141 ll~~L~~LD~~ 151 (260)
T KOG2739|consen 141 LLPSLKYLDGC 151 (260)
T ss_pred Hhhhhcccccc
Confidence 34556655443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.17 E-value=1.9e-05 Score=48.39 Aligned_cols=11 Identities=27% Similarity=0.461 Sum_probs=5.7
Q ss_pred CCCCCEEeccC
Q 025143 191 YQELESLNLTR 201 (257)
Q Consensus 191 ~~~L~~L~l~~ 201 (257)
+++|++|++++
T Consensus 48 l~~L~~L~l~~ 58 (61)
T PF13855_consen 48 LPNLRYLDLSN 58 (61)
T ss_dssp STTESEEEETS
T ss_pred CCCCCEEeCcC
Confidence 45555555544
No 43
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=8.1e-05 Score=58.26 Aligned_cols=110 Identities=22% Similarity=0.218 Sum_probs=71.7
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCH-HHHHHHHhcC
Q 025143 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD-GGLQKILIKC 217 (257)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l~~~~ 217 (257)
+.+|+.|++.++.-.+..++ ..+|+|+.|.++.+..-...++..+...+|+|++|+++++ ++.+ +.+.. +..+
T Consensus 42 ~~~le~ls~~n~gltt~~~~----P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l 115 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNF----PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKEL 115 (260)
T ss_pred ccchhhhhhhccceeecccC----CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhhh
Confidence 45566666654422222222 2567999999998633334456777777899999999994 6764 33333 4567
Q ss_pred CCCCeEecCCCCCCchH-HHHHHHHhccccceeecccc
Q 025143 218 SSLRSLNLYALSGYIMM-SQYLCIIFSLSVRISNLLDW 254 (257)
Q Consensus 218 ~~L~~L~l~~c~~~~~~-~~~~~~~~~~~L~~L~l~~~ 254 (257)
++|..|++..|....-. .........++|+.|+-.|.
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 88999999998765311 24446677788888776554
No 44
>PLN03150 hypothetical protein; Provisional
Probab=97.14 E-value=0.00098 Score=60.45 Aligned_cols=61 Identities=26% Similarity=0.354 Sum_probs=25.9
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYAL 228 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 228 (257)
.+++|+.|++++| .++......+. .+++|+.|+++++ .++.. +...+.++++|+.|+++++
T Consensus 440 ~L~~L~~L~Ls~N-~l~g~iP~~~~-~l~~L~~LdLs~N-~lsg~-iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 440 KLRHLQSINLSGN-SIRGNIPPSLG-SITSLEVLDLSYN-SFNGS-IPESLGQLTSLRILNLNGN 500 (623)
T ss_pred CCCCCCEEECCCC-cccCcCChHHh-CCCCCCEEECCCC-CCCCC-CchHHhcCCCCCEEECcCC
Confidence 4455555555554 33322112222 2555555555553 33321 2222344455555555553
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.07 E-value=0.00022 Score=63.59 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=44.5
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHh-cCCCCCeEecCCCCCCchHHHHHHHHh
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI-KCSSLRSLNLYALSGYIMMSQYLCIIF 242 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~-~~~~L~~L~l~~c~~~~~~~~~~~~~~ 242 (257)
-++.|++|+|+++ .+++ +..+.. |++|++|||+++ .+. .+..+.. +| +|..|.+++ +.++ .-.++.+
T Consensus 185 ll~ale~LnLshN-k~~~--v~~Lr~-l~~LkhLDlsyN-~L~--~vp~l~~~gc-~L~~L~lrn-N~l~---tL~gie~ 252 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTK--VDNLRR-LPKLKHLDLSYN-CLR--HVPQLSMVGC-KLQLLNLRN-NALT---TLRGIEN 252 (1096)
T ss_pred HHHHhhhhccchh-hhhh--hHHHHh-cccccccccccc-hhc--cccccchhhh-hheeeeecc-cHHH---hhhhHHh
Confidence 3456777888776 4554 344444 777888888773 343 2222222 33 477777766 3333 2235566
Q ss_pred ccccceeeccc
Q 025143 243 SLSVRISNLLD 253 (257)
Q Consensus 243 ~~~L~~L~l~~ 253 (257)
+.+|+.||+++
T Consensus 253 LksL~~LDlsy 263 (1096)
T KOG1859|consen 253 LKSLYGLDLSY 263 (1096)
T ss_pred hhhhhccchhH
Confidence 66677766553
No 46
>PLN03150 hypothetical protein; Provisional
Probab=96.74 E-value=0.003 Score=57.37 Aligned_cols=108 Identities=16% Similarity=0.065 Sum_probs=65.6
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCC
Q 025143 116 LESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 195 (257)
Q Consensus 116 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~ 195 (257)
++.|+|.++ .+....-.. ...+++|+.|+++++ .++...-..+ ..+++|+.|++++| .++......+.. +++|+
T Consensus 420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~-~~l~~L~~LdLs~N-~lsg~iP~~l~~-L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSL-GSITSLEVLDLSYN-SFNGSIPESLGQ-LTSLR 493 (623)
T ss_pred EEEEECCCC-CccccCCHH-HhCCCCCCEEECCCC-cccCcCChHH-hCCCCCCEEECCCC-CCCCCCchHHhc-CCCCC
Confidence 566677665 333222222 345789999999876 4543222223 47889999999997 666544444544 89999
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCC
Q 025143 196 SLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSG 230 (257)
Q Consensus 196 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ 230 (257)
+|+++++ .++...-..+.....++..+++.++..
T Consensus 494 ~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 494 ILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred EEECcCC-cccccCChHHhhccccCceEEecCCcc
Confidence 9999885 455332222222234567777776543
No 47
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.00077 Score=53.62 Aligned_cols=13 Identities=38% Similarity=0.299 Sum_probs=5.9
Q ss_pred hcCCCCCeEecCC
Q 025143 215 IKCSSLRSLNLYA 227 (257)
Q Consensus 215 ~~~~~L~~L~l~~ 227 (257)
.++|+|+.|.|..
T Consensus 85 knlpsLr~LWL~E 97 (388)
T KOG2123|consen 85 KNLPSLRTLWLDE 97 (388)
T ss_pred hcCchhhhHhhcc
Confidence 3444444444444
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.64 E-value=0.0012 Score=53.18 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=68.4
Q ss_pred ccCCCccEEeccCCCCCc--hHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHH
Q 025143 81 PRYRHVREINLEFAQDIE--DRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI 158 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~--~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 158 (257)
..++-|+.+++++. .++ |..++- .|.++.|+++.+ .+...+ . ...+++|+.|+++++ .++. +
T Consensus 281 dTWq~LtelDLS~N-~I~~iDESvKL--------~Pkir~L~lS~N-~i~~v~--n-La~L~~L~~LDLS~N-~Ls~--~ 344 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LITQIDESVKL--------APKLRRLILSQN-RIRTVQ--N-LAELPQLQLLDLSGN-LLAE--C 344 (490)
T ss_pred chHhhhhhcccccc-chhhhhhhhhh--------ccceeEEecccc-ceeeeh--h-hhhcccceEeecccc-hhHh--h
Confidence 34566788888773 232 222222 378888888776 333222 1 124678888888865 2221 1
Q ss_pred HHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHH-HHHHHHhcCCCCCeEecCCCC
Q 025143 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDG-GLQKILIKCSSLRSLNLYALS 229 (257)
Q Consensus 159 ~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-~l~~l~~~~~~L~~L~l~~c~ 229 (257)
......+-++++|.++++ .+. ++..+.+ +-+|..||++++ ++..- .+.. ..++|.|+.+.+.+.+
T Consensus 345 ~Gwh~KLGNIKtL~La~N-~iE--~LSGL~K-LYSLvnLDl~~N-~Ie~ldeV~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQN-KIE--TLSGLRK-LYSLVNLDLSSN-QIEELDEVNH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhhcCEeeeehhhh-hHh--hhhhhHh-hhhheecccccc-chhhHHHhcc-cccccHHHHHhhcCCC
Confidence 122234556777777775 232 2333444 556777777773 44321 2222 3456777777776633
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.45 E-value=0.0033 Score=35.55 Aligned_cols=32 Identities=38% Similarity=0.513 Sum_probs=12.7
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCC
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA 227 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 227 (257)
+|++|+++++ ++++ +...+.++++|+.|++++
T Consensus 2 ~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNN-QITD--LPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCC-CCcc--cCchHhCCCCCCEEEecC
Confidence 3444444442 3432 222234444444444444
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.35 E-value=0.0037 Score=35.31 Aligned_cols=37 Identities=32% Similarity=0.472 Sum_probs=27.8
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCC
Q 025143 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLT 206 (257)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~ 206 (257)
++|++|+++++ .+++ +......+++|+.|+++++ .++
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence 57999999998 7876 5553455999999999996 565
No 51
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.23 E-value=0.0015 Score=56.92 Aligned_cols=144 Identities=24% Similarity=0.335 Sum_probs=73.9
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhc---CCCCcEEEecCCcccCHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIG 157 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~ 157 (257)
...+.|+.++++++ .+.+.....+.......-..+++|.+..| .++.++...+... .+.++.+++..| .+...+
T Consensus 112 ~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n-~l~~~g 188 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLN-GLIELG 188 (478)
T ss_pred cccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhc-ccchhh
Confidence 56677788888773 46677777766654333345666666666 5555544443322 355555566544 333334
Q ss_pred HHHHHHc-------CCCCCEEeccCCCCCCHHHHHHHHh---hCCC-CCEEeccCCCCCCHHHHHHHHhcCC----CCCe
Q 025143 158 IQHLVKN-------CKHIIDLNLSGCKNLLDKSLQLIAD---NYQE-LESLNLTRCVKLTDGGLQKILIKCS----SLRS 222 (257)
Q Consensus 158 ~~~l~~~-------~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~-L~~L~l~~~~~l~~~~l~~l~~~~~----~L~~ 222 (257)
...+... ..++++|.+++| .++......+.. ..+. +..|++.+ +.+.|.++..+...++ +++.
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~ 266 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRV 266 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhh
Confidence 3333221 234666666666 444443333332 2222 44455554 3455555555544332 3356
Q ss_pred EecCCCC
Q 025143 223 LNLYALS 229 (257)
Q Consensus 223 L~l~~c~ 229 (257)
++++.|+
T Consensus 267 l~l~~ns 273 (478)
T KOG4308|consen 267 LDLSRNS 273 (478)
T ss_pred hhhhcCC
Confidence 6666643
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.86 E-value=0.012 Score=55.37 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=6.5
Q ss_pred cCCCCcEEEecCC
Q 025143 138 TCPELKVFSIYWN 150 (257)
Q Consensus 138 ~~~~L~~L~l~~~ 150 (257)
.+|.|+.|++++|
T Consensus 569 ~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 569 SLPLLRVLDLSGN 581 (889)
T ss_pred hCcceEEEECCCC
Confidence 3455555555543
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.83 E-value=0.00088 Score=59.98 Aligned_cols=36 Identities=28% Similarity=0.176 Sum_probs=15.6
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCC
Q 025143 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA 227 (257)
Q Consensus 191 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 227 (257)
+.+|+.||++++ -+.+..=-..+..+..|+.|+|-|
T Consensus 253 LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 253 LKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcC
Confidence 555666666552 232221111222334455555555
No 54
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.69 E-value=0.0049 Score=53.88 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=72.1
Q ss_pred CccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh-------cCCCCcEEEecCCcccCHHH
Q 025143 85 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS-------TCPELKVFSIYWNVRVTDIG 157 (257)
Q Consensus 85 ~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~-------~~~~L~~L~l~~~~~~~~~~ 157 (257)
.++.|++..| .+++..-..++..... ++.++.+++..+ .+...+...+.. ...++++|++++| .++...
T Consensus 145 ~l~~L~l~~c-~l~~~g~~~l~~~L~~-~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~ 220 (478)
T KOG4308|consen 145 LLQTLELVSC-SLTSEGAAPLAAVLEK-NEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSS 220 (478)
T ss_pred HHHHHHhhcc-cccccchHHHHHHHhc-ccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHH
Confidence 3444555553 3444444444444333 566666666665 232333222211 2345666777666 555544
Q ss_pred HHHHHHcC---CC-CCEEeccCCCCCCHHHHHHHHhhC----CCCCEEeccCCCCCCHHHHHHH---HhcCCCCCeEecC
Q 025143 158 IQHLVKNC---KH-IIDLNLSGCKNLLDKSLQLIADNY----QELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLY 226 (257)
Q Consensus 158 ~~~l~~~~---~~-L~~L~l~~~~~l~~~~l~~l~~~~----~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~ 226 (257)
...+.... +. +..|++..+ .+.|.++..+...+ +.+++++++.| .+++.+...+ ...|++++++.+.
T Consensus 221 c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 221 CALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLS 298 (478)
T ss_pred HHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcc
Confidence 44433222 22 444555554 55555555544432 34466666665 3444433333 3355666666665
Q ss_pred CCCCCchHHHHH
Q 025143 227 ALSGYIMMSQYL 238 (257)
Q Consensus 227 ~c~~~~~~~~~~ 238 (257)
. +.+++.+...
T Consensus 299 ~-n~l~~~~~~~ 309 (478)
T KOG4308|consen 299 N-NPLTDYGVEL 309 (478)
T ss_pred c-CccccHHHHH
Confidence 5 4455555443
No 55
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.68 E-value=0.013 Score=54.11 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=9.0
Q ss_pred CCCCeEecCCCCCCc
Q 025143 218 SSLRSLNLYALSGYI 232 (257)
Q Consensus 218 ~~L~~L~l~~c~~~~ 232 (257)
++|++|+++++ .++
T Consensus 342 ~~Lq~LdLS~N-~Ls 355 (788)
T PRK15387 342 SGLQELSVSDN-QLA 355 (788)
T ss_pred cccceEecCCC-ccC
Confidence 36788888773 444
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.66 E-value=0.012 Score=55.31 Aligned_cols=107 Identities=20% Similarity=0.124 Sum_probs=61.5
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 217 (257)
.+|+|++|-+.++...-......+...+|.|+.|++++|..+.. ++.....+-+|++|+++++ .+. .++.-+.++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~t-~I~--~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSDT-GIS--HLPSGLGNL 617 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccCC-Ccc--ccchHHHHH
Confidence 46788888887653201111222235688999999998755433 3333333778888888884 565 344445556
Q ss_pred CCCCeEecCCCCCCchHHHHHHHHhccccceeec
Q 025143 218 SSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNL 251 (257)
Q Consensus 218 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l 251 (257)
.+|.+|++......... .......++|+.|.+
T Consensus 618 k~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESI--PGILLELQSLRVLRL 649 (889)
T ss_pred Hhhheeccccccccccc--cchhhhcccccEEEe
Confidence 67777777654332211 223334566666654
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.65 E-value=0.0051 Score=50.13 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=39.1
Q ss_pred cccccccCc----HHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCceEee
Q 025143 14 EETWSKETV----PKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63 (257)
Q Consensus 14 ~~~~~~~~~----pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~ 63 (257)
+.+++...| .++-..||+||+..+|+.|..|||.|++. ..++..|+.+-
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~-l~dg~~WKkLi 123 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV-LSDGMLWKKLI 123 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH-hccchHHHHHH
Confidence 445555554 45777899999999999999999999987 77788888763
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.57 E-value=0.033 Score=47.49 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=46.8
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++++.|++++| .+.... .+ -++|++|.+.+|..+.... . .-.++|++|++++|..++ .
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP--~L-------P~sLtsL~Lsnc~nLtsLP--~--~LP~nLe~L~Ls~Cs~L~-----s 109 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP--VL-------PNELTEITIENCNNLTTLP--G--SIPEGLEKLTVCHCPEIS-----G 109 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC--CC-------CCCCcEEEccCCCCcccCC--c--hhhhhhhheEccCccccc-----c
Confidence 45688999999987 343221 11 2479999999986653211 1 113689999999885543 1
Q ss_pred HHHcCCCCCEEeccC
Q 025143 161 LVKNCKHIIDLNLSG 175 (257)
Q Consensus 161 l~~~~~~L~~L~l~~ 175 (257)
+ .+.|++|++.+
T Consensus 110 L---P~sLe~L~L~~ 121 (426)
T PRK15386 110 L---PESVRSLEIKG 121 (426)
T ss_pred c---ccccceEEeCC
Confidence 2 34677777765
No 59
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.40 E-value=0.017 Score=27.73 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=7.4
Q ss_pred CCcEEEecCCcccCHHHHHHH
Q 025143 141 ELKVFSIYWNVRVTDIGIQHL 161 (257)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~~l 161 (257)
+|++|++++| .++++++..+
T Consensus 3 ~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 3 NLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp T-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCEEEccCC-cCCHHHHHHh
Confidence 4444444433 3444444333
No 60
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.40 E-value=0.0031 Score=52.56 Aligned_cols=44 Identities=27% Similarity=0.441 Sum_probs=27.1
Q ss_pred CccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCCh
Q 025143 80 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD 129 (257)
Q Consensus 80 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~ 129 (257)
+..+++|++++|++. .++ .|+..++..+++|..|.+.+..++++
T Consensus 87 F~~l~~LRrLdLS~N-~Is-----~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKN-NIS-----FIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred ccchhhhceeccccc-chh-----hcChHhhhhhHhhhHHHhhcCCchhh
Confidence 367789999999874 333 33333334457777777776435554
No 61
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.39 E-value=0.014 Score=28.02 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=9.8
Q ss_pred CCCCEEeccCCCCCCHHHHHHH
Q 025143 192 QELESLNLTRCVKLTDGGLQKI 213 (257)
Q Consensus 192 ~~L~~L~l~~~~~l~~~~l~~l 213 (257)
++|++|++++| .++++++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 45555555554 3555555543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.38 E-value=0.0074 Score=45.85 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=41.1
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHH--HHHHhh
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADN 190 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l--~~l~~~ 190 (257)
+++|..|.+.++ .++.-+ ..+...+|+|+.|.+.++.-..-..+..++ .||+|++|.+-++ .++...= .++...
T Consensus 63 l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~N-pv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 63 LPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGN-PVEHKKNYRLYVLYK 138 (233)
T ss_pred ccccceEEecCC-cceeec-cchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCC-chhcccCceeEEEEe
Confidence 466666666655 333211 112334566677777655222222344443 5667777766664 2222110 111122
Q ss_pred CCCCCEEeccC
Q 025143 191 YQELESLNLTR 201 (257)
Q Consensus 191 ~~~L~~L~l~~ 201 (257)
+|+|+.||+..
T Consensus 139 lp~l~~LDF~k 149 (233)
T KOG1644|consen 139 LPSLRTLDFQK 149 (233)
T ss_pred cCcceEeehhh
Confidence 56666666655
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.34 E-value=0.0082 Score=45.61 Aligned_cols=108 Identities=20% Similarity=0.224 Sum_probs=65.9
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 193 (257)
.+...++|.+........ ....+.|.+|.++.+ .++.-. ..+....|+|+.|.+.++.-..-..+..+.. ||.
T Consensus 42 d~~d~iDLtdNdl~~l~~----lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN----LPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPK 114 (233)
T ss_pred cccceecccccchhhccc----CCCccccceEEecCC-cceeec-cchhhhccccceEEecCcchhhhhhcchhcc-CCc
Confidence 566777777652222222 235678888889855 665432 1233456889999999873222234555655 999
Q ss_pred CCEEeccCCCCCCHHH-HH-HHHhcCCCCCeEecCCCC
Q 025143 194 LESLNLTRCVKLTDGG-LQ-KILIKCSSLRSLNLYALS 229 (257)
Q Consensus 194 L~~L~l~~~~~l~~~~-l~-~l~~~~~~L~~L~l~~c~ 229 (257)
|++|.+-+++ +++.. -. .++..+|+|+.||..+..
T Consensus 115 L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 115 LEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 9999998853 43221 11 123356999999996643
No 64
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.31 E-value=0.015 Score=53.72 Aligned_cols=59 Identities=31% Similarity=0.264 Sum_probs=31.6
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchH
Q 025143 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMM 234 (257)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~ 234 (257)
++|+.|+++++ .++. +.. ...+|+.|+++++ .++ .++.-+.++++|+.|+++++ .+++.
T Consensus 402 s~L~~LdLS~N-~Lss--IP~---l~~~L~~L~Ls~N-qLt--~LP~sl~~L~~L~~LdLs~N-~Ls~~ 460 (788)
T PRK15387 402 SELKELMVSGN-RLTS--LPM---LPSGLLSLSVYRN-QLT--RLPESLIHLSSETTVNLEGN-PLSER 460 (788)
T ss_pred cCCCEEEccCC-cCCC--CCc---chhhhhhhhhccC-ccc--ccChHHhhccCCCeEECCCC-CCCch
Confidence 45666666665 3332 111 1234566666663 444 23333456778888888884 34444
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.84 E-value=0.021 Score=48.83 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=18.8
Q ss_pred HhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 214 LIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 214 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
...++.+++|+++++ .+++... .....+++.|++..
T Consensus 251 ~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~ 286 (394)
T COG4886 251 IGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSG 286 (394)
T ss_pred hccccccceeccccc-ccccccc---ccccCccCEEeccC
Confidence 345556777777663 3443322 34455566655543
No 66
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.11 E-value=0.00082 Score=49.71 Aligned_cols=130 Identities=21% Similarity=0.198 Sum_probs=68.6
Q ss_pred CCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCc-ccCHHHHHHH
Q 025143 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNV-RVTDIGIQHL 161 (257)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l 161 (257)
..++++|.+++.. ++-. -..++. +.+|+.|++.+. .+.+ +..-.+++|.|+.|.++-+. .+...|+
T Consensus 32 ~s~ITrLtLSHNK-l~~v-ppnia~-----l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~lprgf--- 98 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVV-PPNIAE-----LKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNILPRGF--- 98 (264)
T ss_pred hhhhhhhhcccCc-eeec-CCcHHH-----hhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcCcccc---
Confidence 3456677777642 2211 111222 367888888765 3332 22223457788888776221 1122333
Q ss_pred HHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCC
Q 025143 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSG 230 (257)
Q Consensus 162 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ 230 (257)
..+|.|+.|++.++ ++++.++..=+-....|+-|.++.+. +. -++.=..++.+|+.|.+++...
T Consensus 99 -gs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dnd-fe--~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 99 -GSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDND-FE--ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred -CCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCC-cc--cCChhhhhhcceeEEeeccCch
Confidence 25677888888886 66665443322224456666666532 21 1222234567888888877443
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.47 E-value=0.094 Score=44.80 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=47.7
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhC
Q 025143 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (257)
Q Consensus 112 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 191 (257)
.++++++|++++| .+..-. .-.++|++|.+++|..++.-. ..+ .++|++|.+++|..+.. + .
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~s-----L---P 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEISG-----L---P 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCcccccc-----c---c
Confidence 3589999999998 544322 123479999999887653211 112 35899999999965531 2 3
Q ss_pred CCCCEEeccC
Q 025143 192 QELESLNLTR 201 (257)
Q Consensus 192 ~~L~~L~l~~ 201 (257)
++|+.|++.+
T Consensus 112 ~sLe~L~L~~ 121 (426)
T PRK15386 112 ESVRSLEIKG 121 (426)
T ss_pred cccceEEeCC
Confidence 4677777754
No 68
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.38 E-value=0.0013 Score=48.75 Aligned_cols=128 Identities=19% Similarity=0.186 Sum_probs=79.3
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+.+++.|.++.. .++... ..+ ..+.+|+.|.+.++ .+++ +..-...+++|++|+++-+ .+.. ....+. .+|
T Consensus 32 ~s~ITrLtLSHN-Kl~~vp-pni-a~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmn-rl~~-lprgfg-s~p 102 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVP-PNI-AELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMN-RLNI-LPRGFG-SFP 102 (264)
T ss_pred hhhhhhhhcccC-ceeecC-CcH-HHhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchh-hhhc-CccccC-CCc
Confidence 467788888765 333211 011 23578888988854 4433 2222347889999998854 2211 112233 489
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
.|+.||+.++ ++....++--+-....|+.|++++.. . +.+.-.+...++|+.|.+-|
T Consensus 103 ~levldltyn-nl~e~~lpgnff~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 103 ALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred hhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeecc
Confidence 9999999994 67766665544455778888887732 2 23344667888999887755
No 69
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.24 E-value=0.04 Score=44.67 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=33.0
Q ss_pred cCcHHHHHHHHcC-----CChhhhHHHHhhcHHHHHHHhcCCCCceE
Q 025143 20 ETVPKVIRIMSTR-----LSQRDIISLLLVSPWLHRTLVSYPSLWLV 61 (257)
Q Consensus 20 ~~~pe~l~~If~~-----L~~~~l~~~~~v~~~w~~~~~~~~~~~~~ 61 (257)
.+|||++..||.. ++.+++.+++.||+.|... ++++..|+.
T Consensus 109 ~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~-~R~~~lwR~ 154 (366)
T KOG2997|consen 109 VLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC-ARDPELWRL 154 (366)
T ss_pred hCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH-HcChHHHHH
Confidence 4445888888765 4578999999999999776 888898874
No 70
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.00 E-value=0.2 Score=43.87 Aligned_cols=91 Identities=19% Similarity=0.095 Sum_probs=51.8
Q ss_pred HHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHh-hCCCCCEEeccCCCCC-----C
Q 025143 133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD-NYQELESLNLTRCVKL-----T 206 (257)
Q Consensus 133 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~-~~~~L~~L~l~~~~~l-----~ 206 (257)
.++....|.+..+.++++.-..-+.+..++...|+|+.|+|+++...-+ ....+.+ ....|++|-+.|++-. .
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccccchhhh
Confidence 4445566777777777665445566777777777888888877522111 1122222 2456777777774422 1
Q ss_pred HHHHHHHHhcCCCCCeEe
Q 025143 207 DGGLQKILIKCSSLRSLN 224 (257)
Q Consensus 207 ~~~l~~l~~~~~~L~~L~ 224 (257)
.+.+.++....|+|..||
T Consensus 290 s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHHhcchheeec
Confidence 233444444567777664
No 71
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=92.99 E-value=0.12 Score=47.91 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=54.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 193 (257)
++|+.|++.++ .++.- .. ..+++|+.|++++| .++. +.. .-.++|++|++++| .++.- ...+. +.
T Consensus 325 ~sL~~L~Ls~N-~Lt~L--P~--~l~~sL~~L~Ls~N-~L~~--LP~--~lp~~L~~LdLs~N-~Lt~L-P~~l~---~s 389 (754)
T PRK15370 325 PGLKTLEAGEN-ALTSL--PA--SLPPELQVLDVSKN-QITV--LPE--TLPPTITTLDVSRN-ALTNL-PENLP---AA 389 (754)
T ss_pred ccceeccccCC-ccccC--Ch--hhcCcccEEECCCC-CCCc--CCh--hhcCCcCEEECCCC-cCCCC-CHhHH---HH
Confidence 45666666655 33221 10 11357777777765 3431 111 01256777888776 44421 11111 25
Q ss_pred CCEEeccCCCCCCH--HHHHHHHhcCCCCCeEecCCCCCCchH
Q 025143 194 LESLNLTRCVKLTD--GGLQKILIKCSSLRSLNLYALSGYIMM 234 (257)
Q Consensus 194 L~~L~l~~~~~l~~--~~l~~l~~~~~~L~~L~l~~c~~~~~~ 234 (257)
|+.|+++++ +++. ..+..+...++++..|++.+ +.+...
T Consensus 390 L~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~-Npls~~ 430 (754)
T PRK15370 390 LQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEY-NPFSER 430 (754)
T ss_pred HHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeC-CCccHH
Confidence 777777774 3431 23455555668888888877 445433
No 72
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.93 E-value=0.17 Score=25.30 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=9.2
Q ss_pred CCcEEEecCCcccCHHHHHHHH
Q 025143 141 ELKVFSIYWNVRVTDIGIQHLV 162 (257)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~~l~ 162 (257)
+|++|+|+++ .++++|...++
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALA 23 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHH
Confidence 3444444433 44444444443
No 73
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.33 E-value=0.14 Score=43.14 Aligned_cols=38 Identities=13% Similarity=0.319 Sum_probs=31.9
Q ss_pred cccccCcHHHHHHHHcCC-ChhhhHHHHhhcHHHHHHHhc
Q 025143 16 TWSKETVPKVIRIMSTRL-SQRDIISLLLVSPWLHRTLVS 54 (257)
Q Consensus 16 ~~~~~~~pe~l~~If~~L-~~~~l~~~~~v~~~w~~~~~~ 54 (257)
+|.. +++|++..|..+| ...|+++++.||+.||.++..
T Consensus 3 ~Ws~-Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWST-LPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred Chhh-CCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 5876 3358999999999 688999999999999998553
No 74
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.06 E-value=0.067 Score=45.14 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=24.8
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCC
Q 025143 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSG 230 (257)
Q Consensus 191 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ 230 (257)
..+|..||+.++ .+. .++...++|.+|++|+++|.+.
T Consensus 504 m~nL~tLDL~nN-dlq--~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 504 MRNLTTLDLQNN-DLQ--QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhcceeccCCC-chh--hCChhhccccceeEEEecCCcc
Confidence 567777777663 333 4566677788888888877443
No 75
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.48 E-value=0.08 Score=44.69 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=56.6
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
.++++|..|++++. .+.+--.+. +.+..|+.|+++.. .+... .........|+.+-.+ ...+.......
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~LP~e~------~~lv~Lq~LnlS~N-rFr~l--P~~~y~lq~lEtllas-~nqi~~vd~~~ 500 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDLPEEM------GSLVRLQTLNLSFN-RFRML--PECLYELQTLETLLAS-NNQIGSVDPSG 500 (565)
T ss_pred Hhhhcceeeecccc-hhhhcchhh------hhhhhhheeccccc-ccccc--hHHHhhHHHHHHHHhc-cccccccChHH
Confidence 55667777777763 222211111 22355777777765 33221 1111111122222222 22332222222
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCC
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 203 (257)
+ ..+.+|..|++..+ .+ ..+..+..++.+|++|++++++
T Consensus 501 l-~nm~nL~tLDL~nN-dl--q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 501 L-KNMRNLTTLDLQNN-DL--QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred h-hhhhhcceeccCCC-ch--hhCChhhccccceeEEEecCCc
Confidence 2 35678999999886 33 3356666679999999999965
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.43 E-value=0.36 Score=24.09 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=10.2
Q ss_pred CCCEEeccCCCCCCHHHHHHHH
Q 025143 193 ELESLNLTRCVKLTDGGLQKIL 214 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~ 214 (257)
+|++|+++++ .+++++...+.
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALA 23 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHH
Confidence 4555555542 45555554443
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.11 E-value=0.15 Score=43.54 Aligned_cols=123 Identities=24% Similarity=0.279 Sum_probs=56.8
Q ss_pred CccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCC
Q 025143 115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 194 (257)
Q Consensus 115 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L 194 (257)
+|+.|+++.. .+... ..-...+++|+.|+++++ .+++- .......+.|+.|+++++ .+.+ +.........|
T Consensus 141 nL~~L~l~~N-~i~~l--~~~~~~l~~L~~L~l~~N-~l~~l--~~~~~~~~~L~~L~ls~N-~i~~--l~~~~~~~~~L 211 (394)
T COG4886 141 NLKELDLSDN-KIESL--PSPLRNLPNLKNLDLSFN-DLSDL--PKLLSNLSNLNNLDLSGN-KISD--LPPEIELLSAL 211 (394)
T ss_pred hccccccccc-chhhh--hhhhhccccccccccCCc-hhhhh--hhhhhhhhhhhheeccCC-cccc--Cchhhhhhhhh
Confidence 5666666654 22221 011234667777777655 33332 111114556777777665 4433 22222223346
Q ss_pred CEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeecc
Q 025143 195 ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLL 252 (257)
Q Consensus 195 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~ 252 (257)
++|.+++...+. ......+++++..+.+.+ +.+.+. .......++++.|+++
T Consensus 212 ~~l~~~~N~~~~---~~~~~~~~~~l~~l~l~~-n~~~~~--~~~~~~l~~l~~L~~s 263 (394)
T COG4886 212 EELDLSNNSIIE---LLSSLSNLKNLSGLELSN-NKLEDL--PESIGNLSNLETLDLS 263 (394)
T ss_pred hhhhhcCCccee---cchhhhhcccccccccCC-ceeeec--cchhccccccceeccc
Confidence 777776642222 112233445566665444 333321 1133445556666554
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.06 E-value=1 Score=39.74 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=60.0
Q ss_pred cCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcc--cCHHHHHHHHHcCCCCCEEeccCCC---CCC--HH
Q 025143 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR--VTDIGIQHLVKNCKHIIDLNLSGCK---NLL--DK 182 (257)
Q Consensus 110 ~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~---~l~--~~ 182 (257)
..+.|.+..++|+++.-..-+++..+....|+|+.|+|+++.. -+...+..+. ...|+.|-+.|++ ... .+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k--~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK--GLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc--CCCHHHeeecCCccccchhhhHH
Confidence 3557899999999874445577888889999999999998622 2222233332 3458999998853 333 34
Q ss_pred HHHHHHhhCCCCCEEe
Q 025143 183 SLQLIADNYQELESLN 198 (257)
Q Consensus 183 ~l~~l~~~~~~L~~L~ 198 (257)
.+.++.+..|.|..||
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 5667777788887776
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.92 E-value=0.12 Score=44.74 Aligned_cols=78 Identities=28% Similarity=0.333 Sum_probs=33.6
Q ss_pred CCCccEEecCCCCCCCh-HHHHHHHhcCCCCcEEEecCCcccCH-HHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhh
Q 025143 113 LQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 190 (257)
+++|+.|++++. .++. .++. .++.|+.|.+.++ .+++ .++ ..++.|+.++++++ .+++..-.. ...
T Consensus 117 ~~~L~~L~ls~N-~I~~i~~l~----~l~~L~~L~l~~N-~i~~~~~~----~~l~~L~~l~l~~n-~i~~ie~~~-~~~ 184 (414)
T KOG0531|consen 117 LVNLQVLDLSFN-KITKLEGLS----TLTLLKELNLSGN-LISDISGL----ESLKSLKLLDLSYN-RIVDIENDE-LSE 184 (414)
T ss_pred hhcchheecccc-ccccccchh----hccchhhheeccC-cchhccCC----ccchhhhcccCCcc-hhhhhhhhh-hhh
Confidence 356666666554 2222 2221 2344556666554 2221 111 12445566666654 333311100 233
Q ss_pred CCCCCEEeccCC
Q 025143 191 YQELESLNLTRC 202 (257)
Q Consensus 191 ~~~L~~L~l~~~ 202 (257)
+..++.+.+.++
T Consensus 185 ~~~l~~l~l~~n 196 (414)
T KOG0531|consen 185 LISLEELDLGGN 196 (414)
T ss_pred ccchHHHhccCC
Confidence 555666666553
No 80
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=89.44 E-value=0.34 Score=40.92 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=36.6
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhc
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 216 (257)
..+|+|++|+++++ .++...-..+ +....++.|.+..+ .+.... ..++..+..|+.|++.+ ++++--.-.+ +..
T Consensus 271 ~~L~~L~~lnlsnN-~i~~i~~~aF-e~~a~l~eL~L~~N-~l~~v~-~~~f~~ls~L~tL~L~~-N~it~~~~~a-F~~ 344 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNN-KITRIEDGAF-EGAAELQELYLTRN-KLEFVS-SGMFQGLSGLKTLSLYD-NQITTVAPGA-FQT 344 (498)
T ss_pred hhcccceEeccCCC-ccchhhhhhh-cchhhhhhhhcCcc-hHHHHH-HHhhhccccceeeeecC-CeeEEEeccc-ccc
Confidence 34555666666543 4433222222 13344555555553 222211 12223355555566655 2444322222 333
Q ss_pred CCCCCeEecCCCC
Q 025143 217 CSSLRSLNLYALS 229 (257)
Q Consensus 217 ~~~L~~L~l~~c~ 229 (257)
...|.+|.+-+.+
T Consensus 345 ~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 345 LFSLSTLNLLSNP 357 (498)
T ss_pred cceeeeeehccCc
Confidence 3445555554433
No 81
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=87.83 E-value=1.1 Score=41.71 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=57.7
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCH--HHHHHHHhhC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD--KSLQLIADNY 191 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~--~~l~~l~~~~ 191 (257)
++|+.|+++++ .+... .. ...++|+.|++++| .++.- ...+. +.|+.|++++| .++. ..+..+...+
T Consensus 346 ~sL~~L~Ls~N-~L~~L--P~--~lp~~L~~LdLs~N-~Lt~L-P~~l~---~sL~~LdLs~N-~L~~LP~sl~~~~~~~ 414 (754)
T PRK15370 346 PELQVLDVSKN-QITVL--PE--TLPPTITTLDVSRN-ALTNL-PENLP---AALQIMQASRN-NLVRLPESLPHFRGEG 414 (754)
T ss_pred CcccEEECCCC-CCCcC--Ch--hhcCCcCEEECCCC-cCCCC-CHhHH---HHHHHHhhccC-CcccCchhHHHHhhcC
Confidence 68999999987 45421 11 11369999999987 55421 11122 35889999997 5542 2345555557
Q ss_pred CCCCEEeccCCCCCCHHHHHHH
Q 025143 192 QELESLNLTRCVKLTDGGLQKI 213 (257)
Q Consensus 192 ~~L~~L~l~~~~~l~~~~l~~l 213 (257)
+++..|++.++ .++...+..+
T Consensus 415 ~~l~~L~L~~N-pls~~tl~~L 435 (754)
T PRK15370 415 PQPTRIIVEYN-PFSERTIQNM 435 (754)
T ss_pred CCccEEEeeCC-CccHHHHHHH
Confidence 89999999985 5776666553
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.21 E-value=0.22 Score=43.03 Aligned_cols=106 Identities=29% Similarity=0.383 Sum_probs=68.7
Q ss_pred CCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCH-HHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHh
Q 025143 111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (257)
Q Consensus 111 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 189 (257)
..+.+|+.|++.+. .+.. +......+++|+.|+++++ .+++ .++. .++.|+.|+++++ .+++ +..+..
T Consensus 92 ~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N-~I~~i~~l~----~l~~L~~L~l~~N-~i~~--~~~~~~ 160 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFN-KITKLEGLS----TLTLLKELNLSGN-LISD--ISGLES 160 (414)
T ss_pred ccccceeeeecccc-chhh--cccchhhhhcchheecccc-ccccccchh----hccchhhheeccC-cchh--ccCCcc
Confidence 44688999999876 3322 2221346799999999977 4543 3332 4556999999997 4544 222222
Q ss_pred hCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCC
Q 025143 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSG 230 (257)
Q Consensus 190 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ 230 (257)
++.|+.++++++ .+++..-.. ...+.+++.+++.+...
T Consensus 161 -l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 161 -LKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred -chhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 788999999985 454332211 35678899999988443
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.77 E-value=0.25 Score=35.52 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=16.5
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 176 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 176 (257)
.+|..++|.++++ .+.+.... + +.+|.|+.|+++.+
T Consensus 75 kf~t~t~lNl~~n-eisdvPeE-~-Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 75 KFPTATTLNLANN-EISDVPEE-L-AAMPALRSLNLRFN 110 (177)
T ss_pred ccchhhhhhcchh-hhhhchHH-H-hhhHHhhhcccccC
Confidence 3445555555533 33332222 2 24455555555554
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=83.37 E-value=0.9 Score=19.68 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=7.3
Q ss_pred CCCCeEecCCCC
Q 025143 218 SSLRSLNLYALS 229 (257)
Q Consensus 218 ~~L~~L~l~~c~ 229 (257)
++|+.|++++|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 467778887765
No 85
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=80.67 E-value=1.6 Score=31.57 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=52.6
Q ss_pred CCCcEEEecCCccc-CHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 025143 140 PELKVFSIYWNVRV-TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (257)
Q Consensus 140 ~~L~~L~l~~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 218 (257)
..+-.++++.|.-. -.+.+..+. ....|+..+++++ .+.+ ....+....|.++.|++.+ +.+.+- +.-+...|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~-~~~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~-neisdv--PeE~Aam~ 100 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLS-KGYELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLAN-NEISDV--PEELAAMP 100 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHh-CCceEEEEecccc-hhhh-CCHHHhhccchhhhhhcch-hhhhhc--hHHHhhhH
Confidence 46667788877422 123334433 4456888888885 3332 2234444467899999988 467643 33366779
Q ss_pred CCCeEecCCCC
Q 025143 219 SLRSLNLYALS 229 (257)
Q Consensus 219 ~L~~L~l~~c~ 229 (257)
.|+.|+++..+
T Consensus 101 aLr~lNl~~N~ 111 (177)
T KOG4579|consen 101 ALRSLNLRFNP 111 (177)
T ss_pred HhhhcccccCc
Confidence 99999998844
No 86
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=79.19 E-value=1.5 Score=21.43 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=11.4
Q ss_pred CCEEeccCCCCCCHHHHHHHHhcCC
Q 025143 194 LESLNLTRCVKLTDGGLQKILIKCS 218 (257)
Q Consensus 194 L~~L~l~~~~~l~~~~l~~l~~~~~ 218 (257)
|+.|.+.....-.+..+..++.+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4555555532223334555555544
No 87
>PF13013 F-box-like_2: F-box-like domain
Probab=74.26 E-value=4.3 Score=27.87 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=23.5
Q ss_pred cCcH-HHHHHHHcCCChhhhHHHHhhcH
Q 025143 20 ETVP-KVIRIMSTRLSQRDIISLLLVSP 46 (257)
Q Consensus 20 ~~~p-e~l~~If~~L~~~~l~~~~~v~~ 46 (257)
..+| |++..||.+.+..++....+.|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 3457 89999999999999998888887
No 88
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=72.47 E-value=1 Score=31.43 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=5.0
Q ss_pred CCCCccEEecCC
Q 025143 112 SLQDLESLNLNG 123 (257)
Q Consensus 112 ~~~~L~~L~L~~ 123 (257)
.+++|+.+++..
T Consensus 33 ~~~~l~~i~~~~ 44 (129)
T PF13306_consen 33 NCTSLKSINFPN 44 (129)
T ss_dssp T-TT-SEEEESS
T ss_pred cccccccccccc
Confidence 344555555543
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=70.34 E-value=2.3 Score=38.11 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=36.3
Q ss_pred ccccccccCcHHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCc
Q 025143 13 EEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLW 59 (257)
Q Consensus 13 ~~~~~~~~~~pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~ 59 (257)
.+.+....+++|+-..||.+|+.+++..+++||+.|+...-.+...|
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 45555666656888889999999999999999999988744444444
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=61.48 E-value=5.1 Score=18.42 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=9.9
Q ss_pred CCCeEecCCCCCCc
Q 025143 219 SLRSLNLYALSGYI 232 (257)
Q Consensus 219 ~L~~L~l~~c~~~~ 232 (257)
+|++|++++| .++
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 5788999987 454
No 91
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=58.33 E-value=7.9 Score=26.98 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=4.7
Q ss_pred HcCCCCCEEecc
Q 025143 163 KNCKHIIDLNLS 174 (257)
Q Consensus 163 ~~~~~L~~L~l~ 174 (257)
..|+.|.. +++
T Consensus 58 ~~~~~l~~-dls 68 (120)
T PF03382_consen 58 AGCSSLNQ-DLS 68 (120)
T ss_pred hhhhhcCC-Ccc
Confidence 34444444 443
No 92
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=53.81 E-value=54 Score=27.47 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCC---CCCEEeccCCCCCCH---HHHHHHHhhCCCCCEEeccCCCC
Q 025143 131 GIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK---HIIDLNLSGCKNLLD---KSLQLIADNYQELESLNLTRCVK 204 (257)
Q Consensus 131 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~---~L~~L~l~~~~~l~~---~~l~~l~~~~~~L~~L~l~~~~~ 204 (257)
.+..+-..-|+++...++....++...+..+...+. ..+...+.+. ..++ ..+..+.+.++.|++|++.+ +.
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnves-nF 266 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVES-NF 266 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheeccc-cc
Confidence 344444455666666666655666555554443332 2333333332 2222 22333444566777777766 36
Q ss_pred CCHHHHHHHHhcC
Q 025143 205 LTDGGLQKILIKC 217 (257)
Q Consensus 205 l~~~~l~~l~~~~ 217 (257)
|++.++-+++..+
T Consensus 267 Itg~gi~a~~~al 279 (353)
T KOG3735|consen 267 ITGLGIMALLRAL 279 (353)
T ss_pred cccHHHHHHHHHH
Confidence 6766666665544
No 93
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=48.29 E-value=15 Score=28.72 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=19.5
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCH
Q 025143 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 181 (257)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 181 (257)
|.+|++-++++. .+.-..+...--.|.+++--.+.+| ++.+
T Consensus 170 ca~lerADl~gs-il~cA~L~~v~~lcaN~eGA~L~gc-Nfed 210 (302)
T KOG1665|consen 170 CAKLERADLEGS-ILHCAILREVEMLCANAEGASLKGC-NFED 210 (302)
T ss_pred hhhhcccccccc-hhhhhhhhhhhheecccccccccCc-CCCC
Confidence 445555555543 2222223332234556666666666 4443
No 94
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=48.26 E-value=15 Score=25.49 Aligned_cols=87 Identities=16% Similarity=0.267 Sum_probs=46.8
Q ss_pred HHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccC--CCCCCHHHHH
Q 025143 134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR--CVKLTDGGLQ 211 (257)
Q Consensus 134 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~--~~~l~~~~l~ 211 (257)
.+...|++|+ .++....--.-..+..+...|+.| ..+++...--.-..+..+...++.|.. +++. ...++ ...
T Consensus 5 ~~F~~~~~l~-~~i~~~dts~vt~m~~mF~~~~~l-~~~l~~w~~s~vt~m~~mF~~~~~l~~-dls~w~~s~v~--~~~ 79 (120)
T PF03382_consen 5 SMFANCTNLN-IDISNWDTSNVTDMSYMFYGCTSL-NQDLSNWDTSNVTNMSGMFAGCSSLNQ-DLSNWDTSNVT--NMS 79 (120)
T ss_pred HHHHhchhcc-CCccccccccceeHHHHhhcchhc-cCChhhhcchhheeHHHHHhhhhhcCC-Ccccccccccc--cHH
Confidence 4445666665 555433211222355555667766 333544211112235666667888888 7764 23343 567
Q ss_pred HHHhcCCCCCeEecC
Q 025143 212 KILIKCSSLRSLNLY 226 (257)
Q Consensus 212 ~l~~~~~~L~~L~l~ 226 (257)
..+.+|+.| ..+|+
T Consensus 80 ~mF~~~~~l-~~~l~ 93 (120)
T PF03382_consen 80 NMFSGCSSL-NQDLS 93 (120)
T ss_pred HHHhhhHHc-CCchh
Confidence 778888877 44443
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=47.25 E-value=18 Score=17.10 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.2
Q ss_pred CCCEEeccCC
Q 025143 167 HIIDLNLSGC 176 (257)
Q Consensus 167 ~L~~L~l~~~ 176 (257)
+|++|+++++
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00369 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 3444444443
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=47.25 E-value=18 Score=17.10 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.2
Q ss_pred CCCEEeccCC
Q 025143 167 HIIDLNLSGC 176 (257)
Q Consensus 167 ~L~~L~l~~~ 176 (257)
+|++|+++++
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00370 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 3444444443
No 97
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=37.22 E-value=12 Score=29.22 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=27.8
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 176 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 176 (257)
.+|+.=++.+. .+....+...--.|.+++--.+.+|+.-+..++. .+|+--.+.+|
T Consensus 171 a~lerADl~gs-il~cA~L~~v~~lcaN~eGA~L~gcNfedps~~k------aNLeganLkG~ 226 (302)
T KOG1665|consen 171 AKLERADLEGS-ILHCAILREVEMLCANAEGASLKGCNFEDPSGLK------ANLEGANLKGA 226 (302)
T ss_pred hhhcccccccc-hhhhhhhhhhhheecccccccccCcCCCCccchh------ccccccccccc
Confidence 45555555553 3444444444445566666666666433333332 24555555554
No 98
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=36.00 E-value=1e+02 Score=18.68 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHh-----cCCCCCeEec
Q 025143 167 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI-----KCSSLRSLNL 225 (257)
Q Consensus 167 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~-----~~~~L~~L~l 225 (257)
+++.+.+.+...++-+.+..+ +-+.+.+.. ..++...+..++. ..|+|+++.+
T Consensus 12 ~~~~l~i~~~~~it~~~Ll~~-----nc~~i~l~~-~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 12 NLEKLSISSSNWITLDDLLNM-----NCKKIELWN-SKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCEEEEccCCcccHHHHHhc-----CCCEEEEEC-CCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 455555554334444333311 224444444 2455555555543 3455655543
No 99
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=28.65 E-value=66 Score=17.52 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=19.1
Q ss_pred H-HHHHHHHcCCChhhhHHHHhhcH
Q 025143 23 P-KVIRIMSTRLSQRDIISLLLVSP 46 (257)
Q Consensus 23 p-e~l~~If~~L~~~~l~~~~~v~~ 46 (257)
| |+|..||+.-....+-...+-|+
T Consensus 4 pidiL~rvFP~~kr~~Le~iL~~C~ 28 (39)
T PF03474_consen 4 PIDILTRVFPHQKRSVLELILQRCN 28 (39)
T ss_pred HHHHHHHHCCCCChHHHHHHHHHcC
Confidence 6 89999999998877776666654
No 100
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=27.35 E-value=2.6e+02 Score=23.59 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhC---CCCCEEeccCCCCCCHH---HHHHHHhcCCCCCeEecCCC
Q 025143 155 DIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY---QELESLNLTRCVKLTDG---GLQKILIKCSSLRSLNLYAL 228 (257)
Q Consensus 155 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~---~~L~~L~l~~~~~l~~~---~l~~l~~~~~~L~~L~l~~c 228 (257)
+..+..+-..-+.++..+++...+++...+..+...+ ...+...+.+ .+.++. .+...+.-++.|++|++.+
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnves- 264 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVES- 264 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheeccc-
Confidence 3445566666789999999998889988877776644 4555566655 344433 3444455689999999988
Q ss_pred CCCchHHHHHHHHhcc
Q 025143 229 SGYIMMSQYLCIIFSL 244 (257)
Q Consensus 229 ~~~~~~~~~~~~~~~~ 244 (257)
+.|+..++......+.
T Consensus 265 nFItg~gi~a~~~al~ 280 (353)
T KOG3735|consen 265 NFITGLGIMALLRALQ 280 (353)
T ss_pred cccccHHHHHHHHHHh
Confidence 7899888766554443
No 101
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=27.15 E-value=51 Score=21.85 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=20.2
Q ss_pred ccccccCcH-HHHHHHHcCCChhhhHHH
Q 025143 15 ETWSKETVP-KVIRIMSTRLSQRDIISL 41 (257)
Q Consensus 15 ~~~~~~~~p-e~l~~If~~L~~~~l~~~ 41 (257)
.-|.. +| |+-..|+++|+..|+...
T Consensus 70 ~~w~~--LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNI--LPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred Cchhh--CCHHHHHHHHHcCCHHHHHHH
Confidence 55765 45 999999999999998754
No 102
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=25.19 E-value=56 Score=15.99 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=10.0
Q ss_pred HHhcCCCCCeEecCC
Q 025143 213 ILIKCSSLRSLNLYA 227 (257)
Q Consensus 213 l~~~~~~L~~L~l~~ 227 (257)
++..+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 455678888887643
No 103
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=24.49 E-value=78 Score=15.37 Aligned_cols=9 Identities=44% Similarity=0.811 Sum_probs=4.8
Q ss_pred CCCEEeccC
Q 025143 193 ELESLNLTR 201 (257)
Q Consensus 193 ~L~~L~l~~ 201 (257)
+|+.|+++.
T Consensus 3 ~L~~L~L~~ 11 (26)
T smart00365 3 NLEELDLSQ 11 (26)
T ss_pred ccCEEECCC
Confidence 455555555
No 104
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.67 E-value=1e+02 Score=27.35 Aligned_cols=11 Identities=9% Similarity=0.024 Sum_probs=5.7
Q ss_pred CCccEEecCCC
Q 025143 114 QDLESLNLNGC 124 (257)
Q Consensus 114 ~~L~~L~L~~~ 124 (257)
+.++.++++..
T Consensus 165 pr~r~~dls~n 175 (553)
T KOG4242|consen 165 PRARQHDLSPN 175 (553)
T ss_pred chhhhhccCCC
Confidence 45555555543
Done!