Query 025143
Match_columns 257
No_of_seqs 149 out of 1875
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 04:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 100.0 1.9E-26 6.6E-31 190.9 23.3 229 14-253 6-256 (336)
2 2p1m_B Transport inhibitor res 99.9 3.3E-23 1.1E-27 183.8 15.5 220 19-253 7-244 (594)
3 3ogk_B Coronatine-insensitive 99.9 6E-21 2.1E-25 169.2 15.6 174 21-201 16-229 (592)
4 2ast_B S-phase kinase-associat 99.8 5.3E-18 1.8E-22 140.1 18.2 187 57-253 93-281 (336)
5 3ogk_B Coronatine-insensitive 99.8 2.1E-17 7.3E-22 146.4 19.1 192 53-254 314-523 (592)
6 2p1m_B Transport inhibitor res 99.8 7.7E-17 2.6E-21 142.9 19.8 212 30-254 288-516 (594)
7 3e4g_A ATP synthase subunit S, 99.7 1.1E-16 3.9E-21 118.5 7.0 105 114-221 61-170 (176)
8 3e4g_A ATP synthase subunit S, 99.7 1.6E-16 5.4E-21 117.8 7.5 105 140-247 61-170 (176)
9 1z7x_W Ribonuclease inhibitor; 99.6 1.3E-13 4.3E-18 118.6 20.3 187 58-252 86-292 (461)
10 2ca6_A RAN GTPase-activating p 99.6 2.3E-13 7.9E-18 114.5 20.7 190 55-253 92-312 (386)
11 2ca6_A RAN GTPase-activating p 99.6 1.5E-13 5.1E-18 115.7 19.1 193 54-253 57-283 (386)
12 3un9_A NLR family member X1; l 99.6 6.6E-14 2.2E-18 117.2 16.4 175 57-241 72-261 (372)
13 3un9_A NLR family member X1; l 99.6 4.7E-13 1.6E-17 112.0 19.0 126 84-214 126-260 (372)
14 1z7x_W Ribonuclease inhibitor; 99.5 5E-13 1.7E-17 114.8 19.3 77 82-161 225-304 (461)
15 3goz_A Leucine-rich repeat-con 99.5 2.6E-12 8.9E-17 107.2 15.9 189 58-253 52-262 (362)
16 3goz_A Leucine-rich repeat-con 99.4 3.9E-12 1.3E-16 106.1 13.3 225 23-254 39-291 (362)
17 1io0_A Tropomodulin; LRR prote 99.2 2.5E-10 8.5E-15 86.0 14.2 119 113-235 35-167 (185)
18 1io0_A Tropomodulin; LRR prote 99.2 8.2E-10 2.8E-14 83.2 16.4 124 81-209 33-167 (185)
19 2je0_A Acidic leucine-rich nuc 99.2 6.8E-12 2.3E-16 91.2 4.6 131 114-253 17-149 (149)
20 4ezg_A Putative uncharacterize 99.2 3.7E-12 1.3E-16 97.1 3.1 128 81-227 63-190 (197)
21 2ra8_A Uncharacterized protein 99.1 2.6E-10 8.8E-15 94.8 9.4 148 81-241 169-329 (362)
22 2je0_A Acidic leucine-rich nuc 99.1 6.5E-11 2.2E-15 85.9 4.6 134 81-227 14-149 (149)
23 4fmz_A Internalin; leucine ric 99.1 6.1E-10 2.1E-14 92.0 10.6 123 113-253 220-342 (347)
24 4ezg_A Putative uncharacterize 99.1 6.5E-11 2.2E-15 90.1 3.7 149 82-253 42-190 (197)
25 2ell_A Acidic leucine-rich nuc 99.0 3.4E-11 1.2E-15 89.2 1.2 136 81-229 21-158 (168)
26 4fmz_A Internalin; leucine ric 99.0 9.3E-10 3.2E-14 90.9 9.4 123 113-253 198-320 (347)
27 1h6u_A Internalin H; cell adhe 99.0 6.3E-10 2.1E-14 90.7 8.1 145 81-253 82-226 (308)
28 1ozn_A Reticulon 4 receptor; N 99.0 6.7E-11 2.3E-15 95.2 0.5 180 56-253 55-234 (285)
29 4glp_A Monocyte differentiatio 99.0 7.4E-11 2.5E-15 96.2 0.2 181 58-253 92-281 (310)
30 2ell_A Acidic leucine-rich nuc 98.9 8.1E-11 2.8E-15 87.2 0.1 134 112-254 22-157 (168)
31 1wwl_A Monocyte differentiatio 98.9 1.6E-10 5.4E-15 94.3 1.8 183 56-253 94-283 (312)
32 4fcg_A Uncharacterized protein 98.9 1.4E-11 5E-16 101.3 -4.7 83 164-253 204-286 (328)
33 4fcg_A Uncharacterized protein 98.9 1E-10 3.6E-15 96.1 0.3 129 113-253 182-310 (328)
34 1h6u_A Internalin H; cell adhe 98.9 3.6E-09 1.2E-13 86.2 9.2 163 58-253 42-204 (308)
35 1h6t_A Internalin B; cell adhe 98.9 2.6E-09 8.8E-14 86.3 8.1 163 58-253 47-209 (291)
36 1wwl_A Monocyte differentiatio 98.9 5.2E-10 1.8E-14 91.3 3.5 162 82-253 93-262 (312)
37 1h6t_A Internalin B; cell adhe 98.9 1.6E-09 5.4E-14 87.6 6.1 145 81-253 43-187 (291)
38 2o6q_A Variable lymphocyte rec 98.9 1.8E-10 6.2E-15 92.0 0.2 134 81-228 58-191 (270)
39 1m9s_A Internalin B; cell inva 98.9 2.1E-09 7.3E-14 95.3 6.3 163 58-253 44-206 (605)
40 1o6v_A Internalin A; bacterial 98.9 1.2E-08 4.1E-13 87.8 10.6 121 113-253 264-384 (466)
41 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 2.6E-09 8.9E-14 63.0 4.4 42 21-63 12-53 (53)
42 2ra8_A Uncharacterized protein 98.8 2.6E-08 9E-13 82.7 11.6 159 54-227 169-339 (362)
43 1m9s_A Internalin B; cell inva 98.8 1.7E-09 5.8E-14 95.9 4.4 145 81-253 40-184 (605)
44 1ozn_A Reticulon 4 receptor; N 98.8 3E-10 1E-14 91.4 -0.5 166 55-236 78-243 (285)
45 3rfs_A Internalin B, repeat mo 98.8 2.8E-10 9.5E-15 91.1 -0.8 155 81-253 60-214 (272)
46 4glp_A Monocyte differentiatio 98.8 1.5E-09 5.2E-14 88.4 3.4 185 58-253 65-260 (310)
47 1xeu_A Internalin C; cellular 98.8 9.2E-10 3.2E-14 87.6 1.9 143 57-229 41-183 (263)
48 2z66_A Variable lymphocyte rec 98.8 6.2E-11 2.1E-15 96.4 -5.0 35 56-94 77-111 (306)
49 3v47_A TOLL-like receptor 5B a 98.8 2.2E-10 7.4E-15 98.2 -2.1 183 57-253 30-221 (455)
50 1o6v_A Internalin A; bacterial 98.8 9.5E-09 3.2E-13 88.4 7.8 121 113-253 242-362 (466)
51 2z66_A Variable lymphocyte rec 98.8 6.2E-11 2.1E-15 96.4 -6.0 134 112-253 99-232 (306)
52 3zyi_A Leucine-rich repeat-con 98.8 7.1E-10 2.4E-14 95.1 0.3 35 57-94 75-109 (452)
53 2z80_A TOLL-like receptor 2, v 98.8 9E-10 3.1E-14 91.4 0.9 111 113-229 123-233 (353)
54 3zyj_A Leucine-rich repeat-con 98.8 6.3E-10 2.1E-14 95.1 -0.3 13 81-93 85-97 (440)
55 3v47_A TOLL-like receptor 5B a 98.8 4.1E-09 1.4E-13 90.2 4.5 65 81-150 100-164 (455)
56 3vq2_A TLR4, TOLL-like recepto 98.8 2.7E-10 9.3E-15 101.1 -3.5 86 139-229 447-532 (606)
57 1a9n_A U2A', U2A'; complex (nu 98.8 3.7E-09 1.3E-13 78.8 3.2 134 80-229 15-151 (176)
58 3rfs_A Internalin B, repeat mo 98.8 9.6E-10 3.3E-14 87.9 0.0 153 81-253 38-190 (272)
59 2z80_A TOLL-like receptor 2, v 98.7 3.7E-10 1.3E-14 93.7 -2.7 180 57-253 52-231 (353)
60 1pgv_A TMD-1, tropomodulin TMD 98.7 2.1E-07 7.1E-12 70.1 12.4 115 111-227 38-166 (197)
61 2z7x_B TOLL-like receptor 1, v 98.7 3.4E-09 1.1E-13 92.4 2.7 155 81-253 321-477 (520)
62 3t6q_A CD180 antigen; protein- 98.7 3.1E-10 1.1E-14 100.8 -4.0 110 138-253 374-485 (606)
63 3t6q_A CD180 antigen; protein- 98.7 7.1E-10 2.4E-14 98.4 -2.1 11 57-67 325-335 (606)
64 2id5_A Lingo-1, leucine rich r 98.7 5.8E-10 2E-14 96.2 -2.6 84 164-253 150-233 (477)
65 2id5_A Lingo-1, leucine rich r 98.7 1.4E-09 4.7E-14 93.8 -0.2 131 113-253 127-257 (477)
66 3vq2_A TLR4, TOLL-like recepto 98.7 2.4E-10 8.1E-15 101.5 -5.2 85 164-253 446-530 (606)
67 3rgz_A Protein brassinosteroid 98.7 7.6E-10 2.6E-14 101.0 -2.0 37 56-94 125-161 (768)
68 3rgz_A Protein brassinosteroid 98.7 1.5E-09 5.2E-14 99.1 -0.1 159 56-230 99-259 (768)
69 3zyi_A Leucine-rich repeat-con 98.7 1.4E-09 4.7E-14 93.3 -0.7 11 84-94 75-85 (452)
70 1pgv_A TMD-1, tropomodulin TMD 98.7 9.5E-07 3.3E-11 66.5 14.9 119 81-202 38-167 (197)
71 2z81_A CD282 antigen, TOLL-lik 98.7 2.9E-08 9.9E-13 87.0 7.4 34 191-228 450-483 (549)
72 2z63_A TOLL-like receptor 4, v 98.7 1.9E-10 6.6E-15 101.2 -6.6 85 164-253 443-527 (570)
73 3m19_A Variable lymphocyte rec 98.7 2.9E-09 9.8E-14 84.1 0.7 138 81-232 56-193 (251)
74 2o6q_A Variable lymphocyte rec 98.7 1.5E-09 5.2E-14 86.6 -0.9 175 57-253 16-190 (270)
75 3zyj_A Leucine-rich repeat-con 98.7 1.4E-09 4.7E-14 93.0 -1.2 156 81-253 109-264 (440)
76 3o53_A Protein LRIM1, AGAP0063 98.7 1.8E-09 6.3E-14 88.2 -0.7 167 56-253 57-223 (317)
77 3oja_A Leucine-rich immune mol 98.7 2.8E-09 9.6E-14 92.3 0.4 82 139-228 143-224 (487)
78 3m19_A Variable lymphocyte rec 98.7 1.1E-09 3.7E-14 86.5 -2.2 186 44-253 3-188 (251)
79 3oja_B Anopheles plasmodium-re 98.7 2.1E-09 7.3E-14 95.4 -0.8 81 164-252 252-332 (597)
80 2z62_A TOLL-like receptor 4, v 98.6 7.4E-10 2.5E-14 88.7 -3.6 178 57-253 28-209 (276)
81 2z63_A TOLL-like receptor 4, v 98.6 3.2E-10 1.1E-14 99.8 -6.6 132 113-253 372-503 (570)
82 1ogq_A PGIP-2, polygalacturona 98.6 1.6E-10 5.6E-15 94.4 -7.9 34 57-92 50-84 (313)
83 3o6n_A APL1; leucine-rich repe 98.6 2.4E-09 8.1E-14 90.0 -1.0 37 55-94 91-127 (390)
84 3o53_A Protein LRIM1, AGAP0063 98.6 1.8E-09 6.2E-14 88.2 -1.8 152 83-252 119-270 (317)
85 2z7x_B TOLL-like receptor 1, v 98.6 3.8E-08 1.3E-12 85.7 6.2 162 55-236 322-486 (520)
86 1ogq_A PGIP-2, polygalacturona 98.6 5E-10 1.7E-14 91.4 -5.7 57 191-252 220-276 (313)
87 1ds9_A Outer arm dynein; leuci 98.6 4.1E-09 1.4E-13 80.1 -0.3 126 81-224 45-180 (198)
88 1xku_A Decorin; proteoglycan, 98.6 6.5E-09 2.2E-13 85.3 0.8 37 55-94 74-110 (330)
89 2z81_A CD282 antigen, TOLL-lik 98.6 6.1E-08 2.1E-12 84.9 6.5 12 191-202 386-397 (549)
90 3bz5_A Internalin-J, INLJ; leu 98.6 8.1E-08 2.8E-12 82.4 6.7 95 58-176 43-137 (457)
91 1ziw_A TOLL-like receptor 3; i 98.6 5.4E-09 1.8E-13 94.1 -0.7 180 56-253 24-204 (680)
92 1a9n_A U2A', U2A'; complex (nu 98.6 1.4E-08 4.7E-13 75.7 1.5 13 164-176 111-123 (176)
93 3oja_B Anopheles plasmodium-re 98.6 4.5E-09 1.5E-13 93.3 -1.4 103 138-253 252-354 (597)
94 1p9a_G Platelet glycoprotein I 98.6 2.9E-09 1E-13 85.9 -2.4 13 81-93 52-64 (290)
95 3oja_A Leucine-rich immune mol 98.5 5E-09 1.7E-13 90.7 -1.4 152 82-251 118-269 (487)
96 1ziw_A TOLL-like receptor 3; i 98.5 1.1E-08 3.8E-13 92.0 0.7 181 56-253 48-231 (680)
97 3j0a_A TOLL-like receptor 5; m 98.5 7.9E-10 2.7E-14 102.0 -7.3 161 55-230 22-186 (844)
98 1p9a_G Platelet glycoprotein I 98.5 3.8E-09 1.3E-13 85.3 -2.5 149 57-228 10-158 (290)
99 3bz5_A Internalin-J, INLJ; leu 98.5 2.7E-08 9.3E-13 85.4 2.5 141 81-253 39-179 (457)
100 1ds9_A Outer arm dynein; leuci 98.5 1.4E-08 4.6E-13 77.2 0.4 128 113-252 47-182 (198)
101 3o6n_A APL1; leucine-rich repe 98.5 1.1E-08 3.9E-13 85.8 -0.2 131 81-228 66-196 (390)
102 4g8a_A TOLL-like receptor 4; l 98.5 7.5E-09 2.6E-13 92.0 -1.5 110 112-228 74-183 (635)
103 4ecn_A Leucine-rich repeat pro 98.5 3.3E-08 1.1E-12 91.0 2.7 108 112-228 489-605 (876)
104 4ecn_A Leucine-rich repeat pro 98.5 5E-09 1.7E-13 96.4 -2.9 132 82-229 489-630 (876)
105 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 1.5E-08 5.1E-13 89.2 0.1 62 82-150 351-413 (562)
106 1xeu_A Internalin C; cellular 98.5 7.5E-08 2.6E-12 76.5 4.0 144 81-253 38-181 (263)
107 2z62_A TOLL-like receptor 4, v 98.5 5.6E-09 1.9E-13 83.5 -2.8 133 84-229 28-160 (276)
108 2o6s_A Variable lymphocyte rec 98.5 1.7E-08 5.7E-13 77.3 -0.5 135 83-231 27-161 (208)
109 3j0a_A TOLL-like receptor 5; m 98.4 6.2E-09 2.1E-13 96.0 -4.0 160 55-229 46-215 (844)
110 2v9t_B SLIT homolog 2 protein 98.4 2.4E-08 8.2E-13 77.2 -0.1 138 84-235 32-169 (220)
111 1xku_A Decorin; proteoglycan, 98.4 3.5E-08 1.2E-12 80.9 0.8 33 56-94 99-131 (330)
112 2v70_A SLIT-2, SLIT homolog 2 98.4 1.6E-08 5.5E-13 78.2 -1.7 158 59-235 13-170 (220)
113 3e6j_A Variable lymphocyte rec 98.4 1.9E-08 6.6E-13 78.2 -1.4 136 83-233 39-174 (229)
114 4eco_A Uncharacterized protein 98.4 2.5E-08 8.6E-13 89.2 -1.0 139 81-228 203-363 (636)
115 1dce_A Protein (RAB geranylger 98.4 1.2E-07 4.1E-12 83.5 3.3 125 114-251 441-567 (567)
116 2o6s_A Variable lymphocyte rec 98.4 2.9E-08 1E-12 75.9 -0.6 131 113-253 27-157 (208)
117 4g8a_A TOLL-like receptor 4; l 98.4 1.8E-08 6.3E-13 89.5 -2.3 130 114-253 52-182 (635)
118 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 1.2E-07 4.3E-12 83.3 2.9 163 54-236 350-515 (562)
119 3e6j_A Variable lymphocyte rec 98.4 3.5E-08 1.2E-12 76.7 -1.0 131 57-203 40-170 (229)
120 2v70_A SLIT-2, SLIT homolog 2 98.3 1.9E-08 6.7E-13 77.7 -2.5 132 58-203 33-164 (220)
121 2xwt_C Thyrotropin receptor; s 98.3 4.2E-09 1.4E-13 82.4 -6.6 35 192-227 179-214 (239)
122 4eco_A Uncharacterized protein 98.3 9.2E-08 3.2E-12 85.5 0.8 134 110-253 202-362 (636)
123 2xot_A Amphoterin-induced prot 98.3 5.2E-08 1.8E-12 81.0 -0.9 141 82-235 62-206 (361)
124 2v9t_B SLIT homolog 2 protein 98.3 3.9E-08 1.3E-12 76.0 -1.6 130 114-253 32-161 (220)
125 2xwt_C Thyrotropin receptor; s 98.3 4.2E-09 1.4E-13 82.4 -7.5 179 57-253 31-214 (239)
126 2xot_A Amphoterin-induced prot 98.2 4E-08 1.4E-12 81.7 -3.0 155 84-253 39-198 (361)
127 2ft3_A Biglycan; proteoglycan, 98.2 3E-08 1E-12 81.4 -4.2 109 138-252 215-328 (332)
128 1w8a_A SLIT protein; signaling 98.2 1.4E-07 4.7E-12 71.3 -1.5 84 113-202 53-136 (192)
129 2wfh_A SLIT homolog 2 protein 98.1 4.4E-07 1.5E-11 68.6 1.0 63 164-230 76-138 (193)
130 1dce_A Protein (RAB geranylger 98.1 5.4E-07 1.8E-11 79.4 1.2 124 84-225 441-567 (567)
131 4b8c_D Glucose-repressible alc 98.1 2.6E-07 8.8E-12 83.8 -1.9 109 110-230 220-328 (727)
132 2o6r_A Variable lymphocyte rec 98.0 5.5E-07 1.9E-11 66.9 -0.5 63 164-230 74-136 (177)
133 2ft3_A Biglycan; proteoglycan, 98.0 1.6E-07 5.5E-12 77.0 -4.8 133 84-229 193-331 (332)
134 3g06_A SSPH2 (leucine-rich rep 97.9 1.5E-05 5.3E-10 70.8 6.6 57 164-229 239-295 (622)
135 2wfh_A SLIT homolog 2 protein 97.8 3.6E-06 1.2E-10 63.5 0.2 105 140-253 31-135 (193)
136 3g06_A SSPH2 (leucine-rich rep 97.8 2.8E-05 9.7E-10 69.1 5.8 114 113-253 180-293 (622)
137 1w8a_A SLIT protein; signaling 97.8 1.3E-06 4.5E-11 65.8 -2.5 115 114-235 29-143 (192)
138 3rw6_A Nuclear RNA export fact 97.7 5.2E-05 1.8E-09 60.0 6.1 38 163-201 167-205 (267)
139 3cvr_A Invasion plasmid antige 97.7 5E-06 1.7E-10 73.1 -0.0 134 58-232 60-193 (571)
140 4b8c_D Glucose-repressible alc 97.7 3.7E-06 1.3E-10 76.2 -1.0 106 136-253 220-325 (727)
141 1jl5_A Outer protein YOPM; leu 97.7 3.1E-05 1.1E-09 66.3 4.5 32 193-228 216-247 (454)
142 3l2o_B F-box only protein 4; s 97.7 9.4E-06 3.2E-10 64.3 1.0 45 21-66 8-52 (312)
143 2o6r_A Variable lymphocyte rec 97.7 5E-06 1.7E-10 61.6 -0.6 107 139-253 27-133 (177)
144 1jl5_A Outer protein YOPM; leu 97.6 0.00016 5.5E-09 61.9 7.3 9 85-93 216-224 (454)
145 3cvr_A Invasion plasmid antige 97.5 2.4E-05 8.1E-10 68.8 1.6 91 57-176 80-170 (571)
146 3sb4_A Hypothetical leucine ri 97.5 8.1E-06 2.8E-10 66.8 -1.2 89 155-251 215-304 (329)
147 2e31_A FBS1, F-box only protei 97.5 2.7E-05 9.3E-10 62.2 1.4 43 19-62 52-95 (297)
148 3rw6_A Nuclear RNA export fact 97.4 0.00028 9.7E-09 55.8 6.8 89 133-226 163-259 (267)
149 3v7d_B Cell division control p 97.4 4.2E-05 1.4E-09 65.0 1.1 50 14-64 11-61 (464)
150 3g39_A Variable lymphocyte rec 97.3 2.9E-05 1E-09 57.1 -0.4 83 114-202 30-112 (170)
151 2r9u_A Variable lymphocyte rec 97.3 3.2E-05 1.1E-09 57.2 -0.4 83 114-202 33-115 (174)
152 1p22_A F-BOX/WD-repeat protein 97.2 6.7E-05 2.3E-09 63.4 0.8 46 16-62 9-58 (435)
153 3g39_A Variable lymphocyte rec 97.1 7.4E-05 2.5E-09 54.9 -0.4 83 140-228 30-112 (170)
154 2r9u_A Variable lymphocyte rec 97.0 8.5E-05 2.9E-09 54.9 -0.4 85 140-230 33-117 (174)
155 4ay9_X Follicle-stimulating ho 97.0 2.9E-06 9.9E-11 70.1 -9.4 182 57-253 30-211 (350)
156 2ovr_B FBW7, F-BOX/WD repeat p 97.0 0.00022 7.4E-09 60.4 1.9 48 14-62 15-62 (445)
157 4ay9_X Follicle-stimulating ho 96.9 4.9E-06 1.7E-10 68.7 -9.2 165 55-233 52-216 (350)
158 3sb4_A Hypothetical leucine ri 96.7 0.00023 7.9E-09 58.1 -0.2 126 113-250 201-327 (329)
159 2ifg_A High affinity nerve gro 96.5 0.00043 1.5E-08 56.8 0.2 84 112-202 29-113 (347)
160 2ifg_A High affinity nerve gro 95.8 0.0014 4.7E-08 53.7 -0.2 87 81-177 28-114 (347)
161 4fdw_A Leucine rich hypothetic 94.1 0.0039 1.3E-07 52.3 -2.1 33 191-227 322-354 (401)
162 4gt6_A Cell surface protein; l 92.6 0.049 1.7E-06 45.3 2.2 102 110-227 261-366 (394)
163 4fdw_A Leucine rich hypothetic 90.5 0.02 6.8E-07 48.0 -2.5 80 166-252 248-331 (401)
164 4gt6_A Cell surface protein; l 90.4 0.046 1.6E-06 45.5 -0.3 79 111-201 285-366 (394)
165 4h09_A Hypothetical leucine ri 82.0 0.14 4.9E-06 42.1 -1.7 81 138-226 261-341 (379)
166 4fs7_A Uncharacterized protein 80.1 0.19 6.4E-06 41.7 -1.6 80 138-227 295-375 (394)
167 4fs7_A Uncharacterized protein 78.0 0.1 3.4E-06 43.4 -3.9 99 110-223 293-393 (394)
168 4h09_A Hypothetical leucine ri 68.1 0.58 2E-05 38.4 -1.6 79 164-251 261-340 (379)
169 3rfe_A Platelet glycoprotein I 65.3 3.6 0.00012 28.1 2.3 46 166-213 31-76 (130)
170 3rfe_A Platelet glycoprotein I 62.7 2.6 9.1E-05 28.8 1.2 40 140-181 31-70 (130)
171 2lz0_A Uncharacterized protein 21.8 42 0.0014 21.5 1.7 34 111-148 17-51 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=1.9e-26 Score=190.90 Aligned_cols=229 Identities=19% Similarity=0.254 Sum_probs=168.9
Q ss_pred cccccccCcHHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCceEeecccccchhhHHHHHh---------------
Q 025143 14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAAL--------------- 78 (257)
Q Consensus 14 ~~~~~~~~~pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~--------------- 78 (257)
+..|.+ +|+|++..||++|+..|+.+++.||++|++. ..++..|+.++++....... .+..+
T Consensus 6 ~~~~~~-LP~eil~~If~~L~~~d~~~~~~vc~~W~~~-~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~n~l 82 (336)
T 2ast_B 6 GVSWDS-LPDELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESLWQTLDLTGKNLHPD-VTGRLLSQGVIAFRCPRSFM 82 (336)
T ss_dssp -CCSSS-SCHHHHHHHHTTSCHHHHHHTTSSCHHHHHH-HTCSTTSSEEECTTCBCCHH-HHHHHHHTTCSEEECTTCEE
T ss_pred cCChhh-CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-hcCchhheeeccccccCCHH-HHHhhhhccceEEEcCCccc
Confidence 455643 4458999999999999999999999999987 56688899999987643322 11111
Q ss_pred -----cCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCccc
Q 025143 79 -----SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRV 153 (257)
Q Consensus 79 -----~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 153 (257)
....+++|+.|+++++. +++..+..+... +++|++|+++++ .+++.....+.. +++|++|++++|..+
T Consensus 83 ~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~----~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 83 DQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQ----CSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGF 155 (336)
T ss_dssp CSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTT----BCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSC
T ss_pred cccchhhccCCCCCEEEccCCC-cCHHHHHHHHhh----CCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCC
Confidence 01234788888888854 665555555443 488888888887 677666666544 788888888887778
Q ss_pred CHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC-CCCEEeccCCC-CCCHHHHHHHHhcCCCCCeEecCCCCCC
Q 025143 154 TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSGY 231 (257)
Q Consensus 154 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~c~~~ 231 (257)
++.++..+...+++|++|++++|..+++.++..+...++ +|++|++++|. .+++..+...+.++++|++|++++|..+
T Consensus 156 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC
Confidence 887777777788888888888886788777777667788 88888888875 5787788887788888888888887766
Q ss_pred chHHHHHHHHhccccceeeccc
Q 025143 232 IMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 232 ~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
++.... .+...++|+.|++.+
T Consensus 236 ~~~~~~-~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 236 KNDCFQ-EFFQLNYLQHLSLSR 256 (336)
T ss_dssp CGGGGG-GGGGCTTCCEEECTT
T ss_pred CHHHHH-HHhCCCCCCEeeCCC
Confidence 665443 335567788887765
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=3.3e-23 Score=183.80 Aligned_cols=220 Identities=18% Similarity=0.227 Sum_probs=166.5
Q ss_pred ccCcHHHHHHHHcCCC-hhhhHHHHhhcHHHHHHHhcCCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCC
Q 025143 19 KETVPKVIRIMSTRLS-QRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDI 97 (257)
Q Consensus 19 ~~~~pe~l~~If~~L~-~~~l~~~~~v~~~w~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 97 (257)
+.+|+|++..||+||+ .+|+.+++.|||+|++. ....|+.+++..+...... . ...++++|++++++++..+
T Consensus 7 ~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~---~~~~~~~l~~~~~~~~~~~---~-~~~~~~~L~~L~L~~~~~~ 79 (594)
T 2p1m_B 7 LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI---ERWCRRKVFIGNCYAVSPA---T-VIRRFPKVRSVELKGKPHF 79 (594)
T ss_dssp ---CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH---HHHHCCEEEESSTTSSCHH---H-HHHHCTTCCEEEEECSCGG
T ss_pred hhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh---hhhhceEEeeccccccCHH---H-HHhhCCCceEEeccCCCch
Confidence 3444689999999999 99999999999999986 3345778888776544322 1 1257788999999886533
Q ss_pred ch-------------HHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHc
Q 025143 98 ED-------------RHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN 164 (257)
Q Consensus 98 ~~-------------~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 164 (257)
.+ ..+..+... +++|++|+++++ .+++..+..+...+++|++|++++|..+++.++..+...
T Consensus 80 ~~~~l~~~~~~~~~~~~l~~l~~~----~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 154 (594)
T 2p1m_B 80 ADFNLVPDGWGGYVYPWIEAMSSS----YTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT 154 (594)
T ss_dssp GGGTCSCTTSCCBCHHHHHHHHHH----CTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH
T ss_pred hhcccccccccchhhHHHHHHHHh----CCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh
Confidence 32 234455544 489999999988 688888888877789999999998888888888888888
Q ss_pred CCCCCEEeccCCCCCCHHH---HHHHHhhCCCCCEEeccCCC-CCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHH
Q 025143 165 CKHIIDLNLSGCKNLLDKS---LQLIADNYQELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCI 240 (257)
Q Consensus 165 ~~~L~~L~l~~~~~l~~~~---l~~l~~~~~~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~ 240 (257)
+++|++|++++|. +++.. +..+...+++|++|++++|. .+++..+..+..++++|++|++++|..+++ +....
T Consensus 155 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~ 231 (594)
T 2p1m_B 155 CRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLL 231 (594)
T ss_dssp CTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHHH
T ss_pred CCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHHH
Confidence 9999999999983 54433 34444468899999998875 588888888888899999999998855544 55566
Q ss_pred Hhccccceeeccc
Q 025143 241 IFSLSVRISNLLD 253 (257)
Q Consensus 241 ~~~~~L~~L~l~~ 253 (257)
...++|+.|++..
T Consensus 232 ~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 232 QRAPQLEELGTGG 244 (594)
T ss_dssp HHCTTCSEEECSB
T ss_pred hcCCcceEccccc
Confidence 7778888887543
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=6e-21 Score=169.24 Aligned_cols=174 Identities=21% Similarity=0.272 Sum_probs=97.2
Q ss_pred CcHHHHHHHHcCC-ChhhhHHHHhhcHHHHHHHhc--------------------CCCCceEeecccccchh--------
Q 025143 21 TVPKVIRIMSTRL-SQRDIISLLLVSPWLHRTLVS--------------------YPSLWLVIDLREMNNAG-------- 71 (257)
Q Consensus 21 ~~pe~l~~If~~L-~~~~l~~~~~v~~~w~~~~~~--------------------~~~~~~~l~l~~~~~~~-------- 71 (257)
+|+|++..||+|| +.+|+.+++.|||+|++.... ..+.+++++++++....
T Consensus 16 LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 95 (592)
T 3ogk_B 16 TVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPEN 95 (592)
T ss_dssp CGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTT
T ss_pred CCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccccc
Confidence 3347999999999 899999999999999876211 12224455554432211
Q ss_pred -----hHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCC-ccEEecCCCCCCChHHHHHHHhcCCCCcEE
Q 025143 72 -----NRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQD-LESLNLNGCQKISDKGIEIISSTCPELKVF 145 (257)
Q Consensus 72 -----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~-L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L 145 (257)
...+..+. ..+++|++|+++++ .+++..+..+...+ ++ |++|++.+|..+...++..+...+++|++|
T Consensus 96 ~~~~~~~~l~~l~-~~~~~L~~L~L~~~-~i~~~~~~~l~~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L 169 (592)
T 3ogk_B 96 WGGYVTPWVTEIS-NNLRQLKSVHFRRM-IVSDLDLDRLAKAR----ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169 (592)
T ss_dssp SCCBCHHHHHHHH-HHCTTCCEEEEESC-BCCHHHHHHHHHHH----GGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEE
T ss_pred ccccchHHHHHHH-hhCCCCCeEEeecc-EecHHHHHHHHHhc----cccCcEEECcCCCCcCHHHHHHHHhhCCCCCEE
Confidence 11122221 35677777777765 46666666665543 33 677777666545556666666666666666
Q ss_pred EecCCcccCHHH---HHHHHHcCCCCCEEeccCCCC--CCHHHHHHHHhhCCCCCEEeccC
Q 025143 146 SIYWNVRVTDIG---IQHLVKNCKHIIDLNLSGCKN--LLDKSLQLIADNYQELESLNLTR 201 (257)
Q Consensus 146 ~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~--l~~~~l~~l~~~~~~L~~L~l~~ 201 (257)
++++| .+++.+ +..+...+++|++|+++++.. ++...+..+...+++|++|++++
T Consensus 170 ~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 170 LMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp ECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred ECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 66665 332222 333444445555555544311 12334444444444444444444
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=5.3e-18 Score=140.12 Aligned_cols=187 Identities=22% Similarity=0.305 Sum_probs=131.9
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
+.++.++++++......+...+ ..+++|++|+++++ .+++.....+. .+++|++|++++|..+++.++..+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~L~L~~~-~l~~~~~~~l~-----~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGIL--SQCSKLQNLSLEGL-RLSDPIVNTLA-----KNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHH--TTBCCCSEEECTTC-BCCHHHHHHHT-----TCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred CCCCEEEccCCCcCHHHHHHHH--hhCCCCCEEeCcCc-ccCHHHHHHHh-----cCCCCCEEECCCCCCCCHHHHHHHH
Confidence 5567777777653222232333 57788888888875 46665555543 3588888888887667777777777
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCC-CCCEEeccCCC-CCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHH
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCK-HIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKIL 214 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 214 (257)
..+++|++|++++|..+++.++......++ +|++|++++|. .+++..+..+...+++|++|++++|..+++..+.. +
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l 243 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-F 243 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-G
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-H
Confidence 778888888888776777777777667788 88888888875 57777777777678888888888875577766665 4
Q ss_pred hcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 215 IKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 215 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
..+++|++|++++|..+++.++. .+...++|+.|++.+
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFG 281 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTT
T ss_pred hCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccC
Confidence 56788888888888766666542 234577777777654
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=2.1e-17 Score=146.44 Aligned_cols=192 Identities=20% Similarity=0.288 Sum_probs=155.3
Q ss_pred hcCCCCceEeecccccchhhHHHHHhcCccCCCccEEeccC----------CCCCchHHHHHHHHhccCCCCCccEEecC
Q 025143 53 VSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEF----------AQDIEDRHLELLKTKCLGSLQDLESLNLN 122 (257)
Q Consensus 53 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~l~~l~~~~~~~~~~L~~L~L~ 122 (257)
....+.++.++++. ...+..+..+. ..+++|++|++++ +..+++..+..+...+ ++|++|++.
T Consensus 314 ~~~~~~L~~L~L~~--~~~~~~l~~~~-~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~----~~L~~L~l~ 386 (592)
T 3ogk_B 314 IQKCPNLEVLETRN--VIGDRGLEVLA-QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC----QELEYMAVY 386 (592)
T ss_dssp HTTCTTCCEEEEEG--GGHHHHHHHHH-HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC----TTCSEEEEE
T ss_pred HHhCcCCCEEeccC--ccCHHHHHHHH-HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC----ccCeEEEee
Confidence 45667888888873 33344444443 5678899999994 6788888888877664 899999994
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEEecC---CcccCH----HHHHHHHHcCCCCCEEeccCCC-CCCHHHHHHHHhhCCCC
Q 025143 123 GCQKISDKGIEIISSTCPELKVFSIYW---NVRVTD----IGIQHLVKNCKHIIDLNLSGCK-NLLDKSLQLIADNYQEL 194 (257)
Q Consensus 123 ~~~~~~~~~l~~l~~~~~~L~~L~l~~---~~~~~~----~~~~~l~~~~~~L~~L~l~~~~-~l~~~~l~~l~~~~~~L 194 (257)
+..+++.++..+...+++|++|++++ +..+++ +++..+...+++|++|++++|. .+++..+..+...+++|
T Consensus 387 -~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 387 -VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp -ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred -cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 44888888888888899999999973 556665 5788888889999999998764 38899999998889999
Q ss_pred CEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeecccc
Q 025143 195 ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLDW 254 (257)
Q Consensus 195 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~ 254 (257)
++|++++| .+++.++..++.+|++|++|++++|. +++.++.......++|+.|++++.
T Consensus 466 ~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 466 RWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp CEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred eEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 99999986 69999999989999999999999987 788887777788899999998764
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=7.7e-17 Score=142.87 Aligned_cols=212 Identities=20% Similarity=0.273 Sum_probs=146.2
Q ss_pred HcCCChhhhHHHHhhcHHHHHHHhcCCCCceEeecccccchhhHHHHHhcCccCCCccEEec--------cCCCCCchHH
Q 025143 30 STRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINL--------EFAQDIEDRH 101 (257)
Q Consensus 30 f~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l--------~~~~~~~~~~ 101 (257)
+..|..-++..+. +...-...+....+.++.++++++ .++..+..+. ..+++|++|++ ..+..+++..
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~-~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLA-STCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHH-HHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHH-HhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 3444444444333 222222222445567778887776 3333333332 45778888888 3345677777
Q ss_pred HHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEec-----CCcccC----HHHHHHHHHcCCCCCEEe
Q 025143 102 LELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIY-----WNVRVT----DIGIQHLVKNCKHIIDLN 172 (257)
Q Consensus 102 l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~-----~~~~~~----~~~~~~l~~~~~~L~~L~ 172 (257)
+..+...+ ++|++|.+. |..+++.++..+...+++|++|+++ +|..++ +.++..+...+++|++|+
T Consensus 364 l~~l~~~~----~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 364 LVSVSMGC----PKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp HHHHHHHC----TTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhc----hhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 77776654 788888654 3477777777777778888888888 566777 677777777888888888
Q ss_pred ccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeecc
Q 025143 173 LSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLL 252 (257)
Q Consensus 173 l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~ 252 (257)
+++ .+++..+..+...+++|++|++++| .+++.++..+..+|++|++|++++|.. ++.+........++|+.|++.
T Consensus 439 L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 439 LSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp CCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEE
T ss_pred ecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeee
Confidence 866 6788888887777888888888886 588888888777888888888888764 666665555667788888876
Q ss_pred cc
Q 025143 253 DW 254 (257)
Q Consensus 253 ~~ 254 (257)
+.
T Consensus 515 ~~ 516 (594)
T 2p1m_B 515 SC 516 (594)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 7
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.66 E-value=1.1e-16 Score=118.54 Aligned_cols=105 Identities=14% Similarity=0.235 Sum_probs=70.0
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHc---CCCCCEEeccCCCCCCHHHHHHHHhh
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN---CKHIIDLNLSGCKNLLDKSLQLIADN 190 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~l~~l~~~ 190 (257)
.+|++|++++| .+++.++.++ ..|++|++|+|++|..++|.++..++.. +++|++|++++|.+++|.++.++.+
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~- 137 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH- 137 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-
T ss_pred ceEeEEeCcCC-CccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-
Confidence 35777777777 4777777666 3577777777777777777777777642 4567777777776677777776654
Q ss_pred CCCCCEEeccCCCCCCHHHH--HHHHhcCCCCC
Q 025143 191 YQELESLNLTRCVKLTDGGL--QKILIKCSSLR 221 (257)
Q Consensus 191 ~~~L~~L~l~~~~~l~~~~l--~~l~~~~~~L~ 221 (257)
+++|++|++++|+.+++.++ ..+-..+|+++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 67777777777777776653 33334556654
No 8
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.66 E-value=1.6e-16 Score=117.77 Aligned_cols=105 Identities=16% Similarity=0.248 Sum_probs=73.9
Q ss_pred CCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHh---hCCCCCEEeccCCCCCCHHHHHHHHhc
Q 025143 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGGLQKILIK 216 (257)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l~~~ 216 (257)
.+|++|++++| .++++|+..+. .|++|++|++++|.+++|.++..+.. .+++|++|++++|.++||.++..+ ..
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HH 137 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GG
T ss_pred ceEeEEeCcCC-CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hc
Confidence 36777888777 47777777764 77778888888877788877777776 245778888888777888877775 35
Q ss_pred CCCCCeEecCCCCCCchHHH--HHHHHhccccc
Q 025143 217 CSSLRSLNLYALSGYIMMSQ--YLCIIFSLSVR 247 (257)
Q Consensus 217 ~~~L~~L~l~~c~~~~~~~~--~~~~~~~~~L~ 247 (257)
|++|++|++++|+.++|.+. .......|+++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 77788888888877777652 23334444443
No 9
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=1.3e-13 Score=118.56 Aligned_cols=187 Identities=21% Similarity=0.275 Sum_probs=103.6
Q ss_pred CceEeecccccchhh---HHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHH
Q 025143 58 LWLVIDLREMNNAGN---RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (257)
Q Consensus 58 ~~~~l~l~~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ 134 (257)
.+++++++++..... .+... +..+++|++|+++++ .+++.....+...+....++|++|++++| .+++.+...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~--l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~ 161 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSST--LRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEP 161 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHH--TTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHH--HccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHH
Confidence 577777776643321 12222 256778888888774 47776666666654444556777777776 555544332
Q ss_pred H---HhcCCCCcEEEecCCcccCHHHHHHHHH----cCCCCCEEeccCCCCCCHHHHHHHH---hhCCCCCEEeccCCCC
Q 025143 135 I---SSTCPELKVFSIYWNVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRCVK 204 (257)
Q Consensus 135 l---~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~l~~l~---~~~~~L~~L~l~~~~~ 204 (257)
+ ...+++|++|+++++ .+++.++..++. ..++|++|++++| .+++.+...+. ..+++|++|++++| .
T Consensus 162 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 238 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-K 238 (461)
T ss_dssp HHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-B
T ss_pred HHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-c
Confidence 2 334677777777766 466666555543 2346666666666 45554322222 23566666666664 4
Q ss_pred CCHHHHHHHHh----cCCCCCeEecCCCCCCchHH---HHHHHHhccccceeecc
Q 025143 205 LTDGGLQKILI----KCSSLRSLNLYALSGYIMMS---QYLCIIFSLSVRISNLL 252 (257)
Q Consensus 205 l~~~~l~~l~~----~~~~L~~L~l~~c~~~~~~~---~~~~~~~~~~L~~L~l~ 252 (257)
+++.++..+.. .+++|++|++++| .+++.+ +...+...++|+.|+++
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECC
Confidence 55555544332 3556666666664 344433 22223334555555554
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=2.3e-13 Score=114.47 Aligned_cols=190 Identities=15% Similarity=0.154 Sum_probs=121.1
Q ss_pred CCCCceEeecccccchhh---HHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCC---------CCccEEecC
Q 025143 55 YPSLWLVIDLREMNNAGN---RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSL---------QDLESLNLN 122 (257)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~---------~~L~~L~L~ 122 (257)
..+.++.+++++...... .+...+ ..+++|+.|+++++ .+++.....+.... ..+ ++|++|+++
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n-~l~~~~~~~l~~~l-~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFL--SKHTPLEHLYLHNN-GLGPQAGAKIARAL-QELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHH--HHCTTCCEEECCSS-CCHHHHHHHHHHHH-HHHHHHHHHHTCCCCCEEECC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHH--HhCCCCCEEECcCC-CCCHHHHHHHHHHH-HHHhhhhhcccCCCCcEEECC
Confidence 446677777776543322 122222 56778888888875 45555444444321 112 688888888
Q ss_pred CCCCCChHHHHHH---HhcCCCCcEEEecCCcccCHHHHHHHHH----cCCCCCEEeccCCCCCCHHHHHHHH---hhCC
Q 025143 123 GCQKISDKGIEII---SSTCPELKVFSIYWNVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIA---DNYQ 192 (257)
Q Consensus 123 ~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~l~~l~---~~~~ 192 (257)
++ .+++.++..+ ...+++|++|++++| .+++.++..++. .+++|++|++++| .+++.+...+. ..++
T Consensus 168 ~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 168 RN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWP 244 (386)
T ss_dssp SS-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCT
T ss_pred CC-CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCC
Confidence 77 6665555533 336788888888877 778777555544 6778888888887 67765544443 3578
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhc-----CCCCCeEecCCCCCCchHHHHH---HH-Hhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIK-----CSSLRSLNLYALSGYIMMSQYL---CI-IFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~-----~~~L~~L~l~~c~~~~~~~~~~---~~-~~~~~L~~L~l~~ 253 (257)
+|++|++++| .+++.+...+... +++|++|++++| .+++.++.. .+ ...++|+.|++..
T Consensus 245 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 245 NLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp TCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred CcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 8888888886 5887766554432 688888888885 455543221 22 3457888887764
No 11
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=1.5e-13 Score=115.67 Aligned_cols=193 Identities=13% Similarity=0.130 Sum_probs=127.6
Q ss_pred cCCCCceEeecccccch--h---hHHHHHh--cCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCC
Q 025143 54 SYPSLWLVIDLREMNNA--G---NRLVAAL--SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQK 126 (257)
Q Consensus 54 ~~~~~~~~l~l~~~~~~--~---~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~ 126 (257)
...+.++.++++.+... . ...+..+ .+..+++|+.|+++++ .+++.....+.... ..+++|++|+|++| .
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l-~~~~~L~~L~L~~n-~ 133 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFL-SKHTPLEHLYLHNN-G 133 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTHHHHHHHH-HHCTTCCEEECCSS-C
T ss_pred HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHHHHHHHHH-HhCCCCCEEECcCC-C
Confidence 34567888888875221 1 1111111 1256789999999885 46654333332221 23589999999988 6
Q ss_pred CChHHHHHHHhc---C---------CCCcEEEecCCcccCHHHHHHHH---HcCCCCCEEeccCCCCCCHHHHHHHHh--
Q 025143 127 ISDKGIEIISST---C---------PELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIAD-- 189 (257)
Q Consensus 127 ~~~~~l~~l~~~---~---------~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~l~~l~~-- 189 (257)
+++.+...+... + ++|++|++++| .+++.++..++ ..+++|++|++++| .+++.++..+..
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~ 211 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEG 211 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHH
Confidence 665554444332 3 89999999977 77766666443 37789999999998 788877555444
Q ss_pred --hCCCCCEEeccCCCCCCHHHHHHH---HhcCCCCCeEecCCCCCCchHHHHH---HHHh--ccccceeeccc
Q 025143 190 --NYQELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSGYIMMSQYL---CIIF--SLSVRISNLLD 253 (257)
Q Consensus 190 --~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~c~~~~~~~~~~---~~~~--~~~L~~L~l~~ 253 (257)
.+++|++|++++| .+++.+...+ +..+++|++|++++|. +++.+... .+.. .++|+.|++.+
T Consensus 212 l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 212 LAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp GGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred hhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcC
Confidence 6889999999986 6876555444 4678899999999965 66654332 2222 67888888765
No 12
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.58 E-value=6.6e-14 Score=117.18 Aligned_cols=175 Identities=18% Similarity=0.172 Sum_probs=135.2
Q ss_pred CCceEeecccccchhhH--HHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHH
Q 025143 57 SLWLVIDLREMNNAGNR--LVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ 134 (257)
+.++.++++++...... .+........++|+.|+++++ .+++..+..++..+ ++|++|+|+++ .+++.+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L----~~L~~L~Ls~n-~l~~~~~~~ 145 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVF----LRARKLGLQLN-SLGPEACKD 145 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHH----HTEEEEECCSS-CCCHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHH----HhccHhhcCCC-CCCHHHHHH
Confidence 46889999987644222 222222234579999999985 68888888887764 78999999998 888888777
Q ss_pred HHh----cCCCCcEEEecCCcccCHHHHHHHH---HcCCCCCEEeccCCCCCCHHHHHHHHh---hCCCCCEEeccCCCC
Q 025143 135 ISS----TCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVK 204 (257)
Q Consensus 135 l~~----~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~ 204 (257)
+.. ..++|++|++++| .+++.++..++ ..+++|++|++++| .+++.++..+.. .+++|++|++++| .
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~ 222 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-G 222 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-C
T ss_pred HHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-C
Confidence 654 4689999999988 88888877765 46789999999998 799988766654 4689999999996 7
Q ss_pred CCHHHHHHHHh---cCCCCCeEecCCCCCCchHHHHHHHH
Q 025143 205 LTDGGLQKILI---KCSSLRSLNLYALSGYIMMSQYLCII 241 (257)
Q Consensus 205 l~~~~l~~l~~---~~~~L~~L~l~~c~~~~~~~~~~~~~ 241 (257)
+++.+...+.. .+++|++|+++++ .+++.+......
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 99988777654 5699999999995 588887665443
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.55 E-value=4.7e-13 Score=112.01 Aligned_cols=126 Identities=17% Similarity=0.257 Sum_probs=60.7
Q ss_pred CCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH---hcCCCCcEEEecCCcccCHHHHHH
Q 025143 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS---STCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
++|+.|+++++ .+++.....++.......++|++|+|++| .+++.+...+. ..+++|++|++++| .+++.++..
T Consensus 126 ~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~ 202 (372)
T 3un9_A 126 LRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLEL 202 (372)
T ss_dssp HTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHH
T ss_pred HhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHH
Confidence 34555555553 35555444444332223345555555555 44444443332 23455555555544 455555444
Q ss_pred HH---HcCCCCCEEeccCCCCCCHHHHHHHHh---hCCCCCEEeccCCCCCCHHHHHHHH
Q 025143 161 LV---KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGGLQKIL 214 (257)
Q Consensus 161 l~---~~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l~ 214 (257)
++ ..+++|++|++++| .+++.+...+.. .+++|++|++++| .+++.+...+.
T Consensus 203 L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~ 260 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLR 260 (372)
T ss_dssp HHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHH
T ss_pred HHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHH
Confidence 33 23345555555555 455544444333 2455555555553 45555555443
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=5e-13 Score=114.82 Aligned_cols=77 Identities=25% Similarity=0.252 Sum_probs=40.8
Q ss_pred cCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHH---HhcCCCCcEEEecCCcccCHHHH
Q 025143 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII---SSTCPELKVFSIYWNVRVTDIGI 158 (257)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~ 158 (257)
.+++|+.|+++++ .+++.....+.......+++|++|++++| .+++.+...+ ...+++|++|+++++ .+++.+.
T Consensus 225 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 301 (461)
T 1z7x_W 225 SKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGA 301 (461)
T ss_dssp HCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHH
T ss_pred hCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHH
Confidence 4566666666654 45555555555443334566666666665 5555543322 223556666666654 4555444
Q ss_pred HHH
Q 025143 159 QHL 161 (257)
Q Consensus 159 ~~l 161 (257)
..+
T Consensus 302 ~~l 304 (461)
T 1z7x_W 302 RLL 304 (461)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 15
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=2.6e-12 Score=107.17 Aligned_cols=189 Identities=16% Similarity=0.047 Sum_probs=116.4
Q ss_pred CceEeecccccchh--hHHHHHhcCcc-CCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHH
Q 025143 58 LWLVIDLREMNNAG--NRLVAALSIPR-YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (257)
Q Consensus 58 ~~~~l~l~~~~~~~--~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ 134 (257)
.++.++++++.... ...+.... .. +++|+.|+++++ .+++.....++.......++|++|+++++ .+++.+...
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQIL-AAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSE 128 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHH-HTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHH-hccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHH
Confidence 78888888764432 11122221 23 378888998885 35554444444432121268899999887 566655554
Q ss_pred HHh---c-CCCCcEEEecCCcccCHHHHHHHHH---cCC-CCCEEeccCCCCCCHHHHHHHH---hhC-CCCCEEeccCC
Q 025143 135 ISS---T-CPELKVFSIYWNVRVTDIGIQHLVK---NCK-HIIDLNLSGCKNLLDKSLQLIA---DNY-QELESLNLTRC 202 (257)
Q Consensus 135 l~~---~-~~~L~~L~l~~~~~~~~~~~~~l~~---~~~-~L~~L~l~~~~~l~~~~l~~l~---~~~-~~L~~L~l~~~ 202 (257)
+.. . +++|++|++++| .+++.++..++. ..+ +|++|++++| .+++.....+. ..+ ++|++|++++|
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 433 2 468999999877 777665555432 344 8999999987 66654443333 335 48999999886
Q ss_pred CCCCHHHHHHHH---hc-CCCCCeEecCCCCCCchHHHH---HHHHhccccceeeccc
Q 025143 203 VKLTDGGLQKIL---IK-CSSLRSLNLYALSGYIMMSQY---LCIIFSLSVRISNLLD 253 (257)
Q Consensus 203 ~~l~~~~l~~l~---~~-~~~L~~L~l~~c~~~~~~~~~---~~~~~~~~L~~L~l~~ 253 (257)
.+++.+...+. .. .++|++|+++++ .+++.+.. ......++|+.|++..
T Consensus 207 -~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 207 -LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp -CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred -CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 57765444333 23 468999999885 56654432 2334556777777654
No 16
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=3.9e-12 Score=106.10 Aligned_cols=225 Identities=17% Similarity=0.088 Sum_probs=139.8
Q ss_pred HHHHHHHHcCC----ChhhhHHHHhh---cHHHHHHHhcCCCCceEeecccccchhh---HHHHHhcCccC-CCccEEec
Q 025143 23 PKVIRIMSTRL----SQRDIISLLLV---SPWLHRTLVSYPSLWLVIDLREMNNAGN---RLVAALSIPRY-RHVREINL 91 (257)
Q Consensus 23 pe~l~~If~~L----~~~~l~~~~~v---~~~w~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~~~~-~~L~~L~l 91 (257)
++.+...|..+ ..-++..+... .+.+...+....+.++.++++++..... .+...+ ..+ ++|+.|++
T Consensus 39 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~L 116 (362)
T 3goz_A 39 TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL--AAIPFTITVLDL 116 (362)
T ss_dssp HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH--HTSCTTCCEEEC
T ss_pred HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH--HhCCCCccEEEC
Confidence 45555666644 33444333221 2333333333347899999998764321 122222 444 78999999
Q ss_pred cCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH---hcCC-CCcEEEecCCcccCHHHHHHHH---Hc
Q 025143 92 EFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS---STCP-ELKVFSIYWNVRVTDIGIQHLV---KN 164 (257)
Q Consensus 92 ~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~---~~~~-~L~~L~l~~~~~~~~~~~~~l~---~~ 164 (257)
+++ .+++.....+........++|++|+++++ .+++.+...+. ...+ +|++|++++| .+++.+...++ ..
T Consensus 117 s~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~ 193 (362)
T 3goz_A 117 GWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLAS 193 (362)
T ss_dssp CSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHT
T ss_pred cCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHh
Confidence 985 46666666655443221368999999988 67765544442 3344 9999999987 67665554443 34
Q ss_pred C-CCCCEEeccCCCCCCHHHHHHHHh---h-CCCCCEEeccCCCCCCHHHH---HHHHhcCCCCCeEecCCCC--CCchH
Q 025143 165 C-KHIIDLNLSGCKNLLDKSLQLIAD---N-YQELESLNLTRCVKLTDGGL---QKILIKCSSLRSLNLYALS--GYIMM 234 (257)
Q Consensus 165 ~-~~L~~L~l~~~~~l~~~~l~~l~~---~-~~~L~~L~l~~~~~l~~~~l---~~l~~~~~~L~~L~l~~c~--~~~~~ 234 (257)
+ ++|++|++++| .+++.+...+.. . .++|++|++++| .+++.+. ..++..+++|++|++++|. .+++.
T Consensus 194 ~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 194 IPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp SCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred CCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 5 48999999998 677754443333 2 469999999996 6777444 4445677899999999875 35555
Q ss_pred HHHHHHHhccccceeecccc
Q 025143 235 SQYLCIIFSLSVRISNLLDW 254 (257)
Q Consensus 235 ~~~~~~~~~~~L~~L~l~~~ 254 (257)
.........++++.|...|+
T Consensus 272 ~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 272 QCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp HHHHHHTTSTTCCEEEEECT
T ss_pred HHHHHHHHhccCCceEEEec
Confidence 55555555555555554444
No 17
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.24 E-value=2.5e-10 Score=86.04 Aligned_cols=119 Identities=19% Similarity=0.123 Sum_probs=75.3
Q ss_pred CCCccEEecCCCCCCChHHHHHHHh---cCCCCcEEEecCCcccCHHHHHHHHH---cCCCCCEEeccCCCCCCHHHHHH
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQL 186 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~l~~ 186 (257)
.++|++|+|+++..+.+.+...++. ..++|++|+++++ .++++|...++. ..+.|++|++++| .+++++..+
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHH
Confidence 4667777776654566665555433 3466777777766 677776655543 3456777777776 677777666
Q ss_pred HHh---hCCCCCEEec--cCCCCCCHHHHHHHH---hcCCCCCeEecCCCCCCchHH
Q 025143 187 IAD---NYQELESLNL--TRCVKLTDGGLQKIL---IKCSSLRSLNLYALSGYIMMS 235 (257)
Q Consensus 187 l~~---~~~~L~~L~l--~~~~~l~~~~l~~l~---~~~~~L~~L~l~~c~~~~~~~ 235 (257)
+.. ..++|++|++ ++ +.+++++...+. ...+.|++|++++| .+.+.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred HHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 655 3467777777 55 367777755544 34577888888774 354443
No 18
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.23 E-value=8.2e-10 Score=83.18 Aligned_cols=124 Identities=16% Similarity=0.139 Sum_probs=102.2
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh---cCCCCcEEEecCCcccCHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIG 157 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~ 157 (257)
...+.|++|+++++..+++.....++... ...++|++|+|+++ .+.+.+...++. ..++|++|+++++ .++++|
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 67899999999986479999888887764 44689999999998 789888776654 4589999999987 899999
Q ss_pred HHHHHH---cCCCCCEEec--cCCCCCCHHHHHHHHh---hCCCCCEEeccCCCCCCHHH
Q 025143 158 IQHLVK---NCKHIIDLNL--SGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGG 209 (257)
Q Consensus 158 ~~~l~~---~~~~L~~L~l--~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~ 209 (257)
+..++. ..+.|++|++ ++| .+++++...+.. ..+.|++|++++| .+++.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 888765 4568999999 666 899988766665 4689999999996 687765
No 19
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=6.8e-12 Score=91.16 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=63.6
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 193 (257)
++|+.|+++++ .+.+..+......+++|++|+++++ .++.. .. ...+++|++|++++| .+++. +......+++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI--AN-LPKLNKLKKLELSDN-RVSGG-LEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TT-CCCCTTCCEEECCSS-CCCSC-THHHHHHCTT
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hh-hhcCCCCCEEECCCC-cccch-HHHHhhhCCC
Confidence 45555555554 3331112222234556666666654 33332 11 234556666666665 34332 2233333666
Q ss_pred CCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHH--HHHHHhccccceeeccc
Q 025143 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQ--YLCIIFSLSVRISNLLD 253 (257)
Q Consensus 194 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~--~~~~~~~~~L~~L~l~~ 253 (257)
|++|++++| .+++......+..+++|++|++++|. +++... ...+...++|+.|++.|
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 666666664 45543322335566666666666643 333321 12445556666666553
No 20
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=3.7e-12 Score=97.06 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=63.6
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++ .+++.. ....+++|++|+++++ .+.+.....+ ..+++|++|+++++ .+++.....
T Consensus 63 ~~l~~L~~L~l~~n-~~~~~~-------~l~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~~ 131 (197)
T 4ezg_A 63 EYAHNIKDLTINNI-HATNYN-------PISGLSNLERLRIMGK-DVTSDKIPNL-SGLTSLTLLDISHS-AHDDSILTK 131 (197)
T ss_dssp GGCTTCSEEEEESC-CCSCCG-------GGTTCTTCCEEEEECT-TCBGGGSCCC-TTCTTCCEEECCSS-BCBGGGHHH
T ss_pred hcCCCCCEEEccCC-CCCcch-------hhhcCCCCCEEEeECC-ccCcccChhh-cCCCCCCEEEecCC-ccCcHhHHH
Confidence 45566666666654 222210 1233466666666655 4443222222 23566666666655 555444444
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCC
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA 227 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 227 (257)
+. .+++|++|++++|..+++- .. ...+++|++|++++| .+++.. .+..+++|++|++++
T Consensus 132 l~-~l~~L~~L~L~~n~~i~~~--~~-l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 132 IN-TLPKVNSIDLSYNGAITDI--MP-LKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQLYAFS 190 (197)
T ss_dssp HT-TCSSCCEEECCSCTBCCCC--GG-GGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCEEEECB
T ss_pred Hh-hCCCCCEEEccCCCCcccc--Hh-hcCCCCCCEEECCCC-CCcChH---HhccCCCCCEEEeeC
Confidence 43 5566666666665324431 22 223666666666664 344321 234556666666655
No 21
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=2.6e-10 Score=94.84 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=102.0
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh-cCCCCcEEEecCCcc--cCHH-
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS-TCPELKVFSIYWNVR--VTDI- 156 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~--~~~~- 156 (257)
..+|+|++|.++++..+.-. . ...++|++|+|..| .++..++..+.. .+|+|++|+|+.+.. ..+.
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~---~------~~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIG---K------KPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCC---S------CBCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred hcCCCCcEEEEeCCCCceec---c------ccCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence 56678888888765222110 0 11478999998876 678888887764 589999999863211 1111
Q ss_pred --HHHHHH--HcCCCCCEEeccCCCCCCHHHHHHHHh--hCCCCCEEeccCCCCCCHHHHHHHHh---cCCCCCeEecCC
Q 025143 157 --GIQHLV--KNCKHIIDLNLSGCKNLLDKSLQLIAD--NYQELESLNLTRCVKLTDGGLQKILI---KCSSLRSLNLYA 227 (257)
Q Consensus 157 --~~~~l~--~~~~~L~~L~l~~~~~l~~~~l~~l~~--~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~ 227 (257)
.+..+. ..+|+|++|.+.+| .+++.....+.. .+|+|++|+++. +.+++.+...+.. .+++|+.|++++
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCC
Confidence 122221 24789999999988 677766666665 468899999987 4799988887764 478999999988
Q ss_pred CCCCchHHHHHHHH
Q 025143 228 LSGYIMMSQYLCII 241 (257)
Q Consensus 228 c~~~~~~~~~~~~~ 241 (257)
| .+++.++.....
T Consensus 317 n-~i~d~~~~~l~~ 329 (362)
T 2ra8_A 317 N-YLSDEMKKELQK 329 (362)
T ss_dssp B-BCCHHHHHHHHH
T ss_pred C-cCCHHHHHHHHH
Confidence 6 588887655444
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=6.5e-11 Score=85.88 Aligned_cols=134 Identities=23% Similarity=0.294 Sum_probs=89.9
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
...++|+.|+++++. +++..+.. ....+++|++|+++++ .+.+. .....+++|++|+++++ .++.. +..
T Consensus 14 ~~~~~l~~L~l~~n~-l~~~~~~~----~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~-~~~ 82 (149)
T 2je0_A 14 RTPSDVKELVLDNSR-SNEGKLEG----LTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGG-LEV 82 (149)
T ss_dssp CCGGGCSEEECTTCB-CBTTBCCS----CCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSC-THH
T ss_pred CCCccCeEEEccCCc-CChhHHHH----HHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccch-HHH
Confidence 445788899988853 44211111 1245689999999887 55544 22346789999999977 55542 344
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHH--HHHHhcCCCCCeEecCC
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGL--QKILIKCSSLRSLNLYA 227 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l--~~l~~~~~~L~~L~l~~ 227 (257)
....+++|++|++++| .+++.........+++|++|++++| .+++... ...+..+++|++|++++
T Consensus 83 ~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 4556899999999998 6776433233445999999999996 4554322 23567889999998853
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.08 E-value=6.1e-10 Score=92.03 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=73.1
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|++|+++++ .+.+... ...+++|++|+++++ .++.. .. ...+++|++|++++| .+++. .. ...++
T Consensus 220 ~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~ 287 (347)
T 4fmz_A 220 MTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTN-QISDI--NA-VKDLTKLKMLNVGSN-QISDI--SV-LNNLS 287 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCC--GG-GGGCT
T ss_pred CCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCC-ccCCC--hh-HhcCCCcCEEEccCC-ccCCC--hh-hcCCC
Confidence 466777777666 3333221 345677777777766 44431 12 235677777777776 45542 22 33477
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|++|++++| .+++..... +.++++|++|++++|. +++... ....++|+.|++.+
T Consensus 288 ~L~~L~L~~n-~l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 288 QLNSLFLNNN-QLGNEDMEV-IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFAN 342 (347)
T ss_dssp TCSEEECCSS-CCCGGGHHH-HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSC
T ss_pred CCCEEECcCC-cCCCcChhH-hhccccCCEEEccCCc-cccccC---hhhhhccceeehhh
Confidence 8888888776 466544433 4567788888888865 333221 45567777777654
No 24
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=6.5e-11 Score=90.13 Aligned_cols=149 Identities=18% Similarity=0.120 Sum_probs=108.5
Q ss_pred cCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 025143 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (257)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (257)
.+++|+.|+++++ .+++-. .+ ..+++|++|+++++ .+.... . ...+++|++|+++++ .+++.....+
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~--~l-----~~l~~L~~L~l~~n-~~~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT--GI-----EYAHNIKDLTINNI-HATNYN--P-ISGLSNLERLRIMGK-DVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT--TG-----GGCTTCSEEEEESC-CCSCCG--G-GTTCTTCCEEEEECT-TCBGGGSCCC
T ss_pred hcCCccEEeccCC-CccChH--HH-----hcCCCCCEEEccCC-CCCcch--h-hhcCCCCCEEEeECC-ccCcccChhh
Confidence 4567889999875 344211 11 23699999999988 444332 2 346899999999987 6776555444
Q ss_pred HHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHH
Q 025143 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCII 241 (257)
Q Consensus 162 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~ 241 (257)
. .+++|++|++++| .+++..+..+.. +++|++|++++|..+++- . .+.++++|++|++++|. +++.. .+.
T Consensus 109 ~-~l~~L~~L~Ls~n-~i~~~~~~~l~~-l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~-i~~~~---~l~ 178 (197)
T 4ezg_A 109 S-GLTSLTLLDISHS-AHDDSILTKINT-LPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDG-VHDYR---GIE 178 (197)
T ss_dssp T-TCTTCCEEECCSS-BCBGGGHHHHTT-CSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBC-CCCCT---TGG
T ss_pred c-CCCCCCEEEecCC-ccCcHhHHHHhh-CCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCC-CcChH---Hhc
Confidence 3 7899999999998 788766666655 999999999997546653 2 36789999999999964 55533 456
Q ss_pred hccccceeeccc
Q 025143 242 FSLSVRISNLLD 253 (257)
Q Consensus 242 ~~~~L~~L~l~~ 253 (257)
..++|+.|++.+
T Consensus 179 ~l~~L~~L~l~~ 190 (197)
T 4ezg_A 179 DFPKLNQLYAFS 190 (197)
T ss_dssp GCSSCCEEEECB
T ss_pred cCCCCCEEEeeC
Confidence 778899888764
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.04 E-value=3.4e-11 Score=89.23 Aligned_cols=136 Identities=25% Similarity=0.269 Sum_probs=69.6
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
...++|+.|+++++. +++..+... ...+++|+.|+++++ .+... .....+++|++|+++++ .++.. +..
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~----~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~ 89 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGL----TAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSEN-RIFGG-LDM 89 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSC----CGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCH
T ss_pred CCcccCCEEECCCCC-CChhhHHHH----HHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCC-cCchH-HHH
Confidence 334567777777643 331111111 122467777777666 34432 12234567777777765 34332 223
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHH--HHHHhcCCCCCeEecCCCC
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGL--QKILIKCSSLRSLNLYALS 229 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l--~~l~~~~~~L~~L~l~~c~ 229 (257)
+...+++|++|++++| .+++.........+++|++|++++| .++.... ...+..+++|++|++++|.
T Consensus 90 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 3345667777777776 4544211112223667777777665 3332211 1245566777777776654
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.02 E-value=9.3e-10 Score=90.92 Aligned_cols=123 Identities=20% Similarity=0.159 Sum_probs=80.1
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|+.|++.++ .+.+... ...+++|++|++++| .++.... ...+++|++|++++| .+++ +..+ ..++
T Consensus 198 l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~--~~~~-~~l~ 265 (347)
T 4fmz_A 198 LTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTN-QISD--INAV-KDLT 265 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCC--CGGG-TTCT
T ss_pred CCccceeecccC-CCCCCch---hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCC-ccCC--ChhH-hcCC
Confidence 456666666655 3332211 345788888888876 4443222 347788999999887 5554 2223 3488
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|++|++++| .+++. . .+..+++|++|++++|. +++... ..+...++|+.|++.+
T Consensus 266 ~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 266 KLKMLNVGSN-QISDI--S-VLNNLSQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp TCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCS
T ss_pred CcCEEEccCC-ccCCC--h-hhcCCCCCCEEECcCCc-CCCcCh-hHhhccccCCEEEccC
Confidence 9999999886 56643 2 35678999999999975 444433 2445678899988865
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.02 E-value=6.3e-10 Score=90.65 Aligned_cols=145 Identities=19% Similarity=0.257 Sum_probs=82.6
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++. +++. . ....+++|++|+++++ .+.+.. . ...+++|++|+++++ .++... .
T Consensus 82 ~~l~~L~~L~L~~n~-l~~~--~-----~~~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~--~ 146 (308)
T 1h6u_A 82 KNLTKITELELSGNP-LKNV--S-----AIAGLQSIKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLN-QITNIS--P 146 (308)
T ss_dssp TTCCSCCEEECCSCC-CSCC--G-----GGTTCTTCCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCG--G
T ss_pred ccCCCCCEEEccCCc-CCCc--h-----hhcCCCCCCEEECCCC-CCCCch--h-hcCCCCCCEEECCCC-ccCcCc--c
Confidence 455666666666643 3321 0 1234567777777766 343321 1 345677777777765 443221 1
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHH
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCI 240 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~ 240 (257)
...+++|++|++++| .+++ +.. ...+++|++|+++++ .+++.. . +..+++|++|++++|. +++.. ..
T Consensus 147 -l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~L~~N~-l~~~~---~l 213 (308)
T 1h6u_A 147 -LAGLTNLQYLSIGNA-QVSD--LTP-LANLSKLTTLKADDN-KISDIS--P-LASLPNLIEVHLKNNQ-ISDVS---PL 213 (308)
T ss_dssp -GGGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSS-CCCCCG--G-GGGCTTCCEEECTTSC-CCBCG---GG
T ss_pred -ccCCCCccEEEccCC-cCCC--Chh-hcCCCCCCEEECCCC-ccCcCh--h-hcCCCCCCEEEccCCc-cCccc---cc
Confidence 236677777777776 4554 222 334777888888775 454322 2 5667788888887754 44332 13
Q ss_pred Hhccccceeeccc
Q 025143 241 IFSLSVRISNLLD 253 (257)
Q Consensus 241 ~~~~~L~~L~l~~ 253 (257)
...++|+.|++.+
T Consensus 214 ~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 214 ANTSNLFIVTLTN 226 (308)
T ss_dssp TTCTTCCEEEEEE
T ss_pred cCCCCCCEEEccC
Confidence 5667777777654
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.97 E-value=6.7e-11 Score=95.22 Aligned_cols=180 Identities=13% Similarity=0.134 Sum_probs=87.5
Q ss_pred CCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHH
Q 025143 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (257)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l 135 (257)
.+.++.+++++.....- ..-.+..+++|+.|+++++..++.... .....+++|++|+++++ .+..... ..
T Consensus 55 ~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~-~~ 124 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARI---DAAAFTGLALLEQLDLSDNAQLRSVDP-----ATFHGLGRLHTLHLDRC-GLQELGP-GL 124 (285)
T ss_dssp CTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSCTTCCCCCT-----TTTTTCTTCCEEECTTS-CCCCCCT-TT
T ss_pred CCCCCEEECCCCcccee---CHhhcCCccCCCEEeCCCCCCccccCH-----HHhcCCcCCCEEECCCC-cCCEECH-hH
Confidence 34566666665432110 011124566777777776432222111 11233567777777665 3332111 11
Q ss_pred HhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHh
Q 025143 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI 215 (257)
Q Consensus 136 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 215 (257)
...+++|++|+++++ .++......+ ..+++|++|++++| .++......+ ..+++|++|+++++ .+++... ..+.
T Consensus 125 ~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~~ 198 (285)
T 1ozn_A 125 FRGLAALQYLYLQDN-ALQALPDDTF-RDLGNLTHLFLHGN-RISSVPERAF-RGLHSLDRLLLHQN-RVAHVHP-HAFR 198 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECT-TTTT
T ss_pred hhCCcCCCEEECCCC-cccccCHhHh-ccCCCccEEECCCC-cccccCHHHh-cCccccCEEECCCC-cccccCH-hHcc
Confidence 234567777777655 3332111111 34567777777775 4443111112 23667777777664 3443221 1234
Q ss_pred cCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 216 KCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 216 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
++++|++|+++++ .+++... ..+...++|+.|++.+
T Consensus 199 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 199 DLGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLND 234 (285)
T ss_dssp TCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCS
T ss_pred CcccccEeeCCCC-cCCcCCH-HHcccCcccCEEeccC
Confidence 5667777777764 3333222 1334556666666654
No 29
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.96 E-value=7.4e-11 Score=96.22 Aligned_cols=181 Identities=16% Similarity=0.122 Sum_probs=95.2
Q ss_pred CceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHH--HHHHHHhccCCCCCccEEecCCCCCCChHHHHHH
Q 025143 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (257)
Q Consensus 58 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l 135 (257)
.++++++++....+... ..+.....++|+.|+++++. ++... +.... ...+++|++|+++++ .+...... .
T Consensus 92 ~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~---~~~~~~L~~L~Ls~n-~l~~~~~~-~ 164 (310)
T 4glp_A 92 RLKELTLEDLKITGTMP-PLPLEATGLALSSLRLRNVS-WATGRSWLAELQ---QWLKPGLKVLSIAQA-HSPAFSCE-Q 164 (310)
T ss_dssp CCCEEEEESCCCBSCCC-CCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHH---TTBCSCCCEEEEECC-SSCCCCTT-S
T ss_pred ceeEEEeeCCEeccchh-hhhhhccCCCCCEEEeeccc-ccchhhhhHHHH---hhhccCCCEEEeeCC-CcchhhHH-H
Confidence 36777776654321100 01100456677888887743 33211 11111 124578888888776 44322111 1
Q ss_pred HhcCCCCcEEEecCCcccCHHHHHHH--HHcCCCCCEEeccCCCCCCH--HHHHHHHhhCCCCCEEeccCCCCCCHHHHH
Q 025143 136 SSTCPELKVFSIYWNVRVTDIGIQHL--VKNCKHIIDLNLSGCKNLLD--KSLQLIADNYQELESLNLTRCVKLTDGGLQ 211 (257)
Q Consensus 136 ~~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~l~~--~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~ 211 (257)
...+++|++|+++++.-.+..++... ...+++|++|++++| .++. .....+...+++|++|+++++ .+++....
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~ 242 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNP 242 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCS
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchh
Confidence 23567888888887632333333211 135678888888887 5652 222334455788888888885 45532111
Q ss_pred HHHhcC---CCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 212 KILIKC---SSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 212 ~l~~~~---~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
. +..+ ++|++|+++++. ++.... ...++|+.|+++.
T Consensus 243 ~-~~~~~~~~~L~~L~Ls~N~-l~~lp~----~~~~~L~~L~Ls~ 281 (310)
T 4glp_A 243 S-APRCMWSSALNSLNLSFAG-LEQVPK----GLPAKLRVLDLSS 281 (310)
T ss_dssp C-CSSCCCCTTCCCEECCSSC-CCSCCS----CCCSCCSCEECCS
T ss_pred h-HHhccCcCcCCEEECCCCC-CCchhh----hhcCCCCEEECCC
Confidence 1 1233 688888887753 442211 1126777777654
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.95 E-value=8.1e-11 Score=87.18 Aligned_cols=134 Identities=21% Similarity=0.279 Sum_probs=82.7
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhC
Q 025143 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (257)
Q Consensus 112 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 191 (257)
..++|++|+++++ .+.+..+......+++|++|+++++ .++.. .. ...+++|++|++++| .+++. +..+...+
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV--SN-LPKLPKLKKLELSEN-RIFGG-LDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC--SS-CCCCSSCCEEEEESC-CCCSC-CCHHHHHC
T ss_pred CcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh--hh-hccCCCCCEEECcCC-cCchH-HHHHHhhC
Confidence 3477888888877 4542222222345678888888876 45543 22 236778888888887 45442 33344458
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHH--HHHHHhccccceeecccc
Q 025143 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQ--YLCIIFSLSVRISNLLDW 254 (257)
Q Consensus 192 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~--~~~~~~~~~L~~L~l~~~ 254 (257)
++|++|++++| .+++......+..+++|++|+++++. +++... ...+...++|+.|++.+-
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 88888888886 56542221335677888888888864 333322 124566778888877653
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.95 E-value=1.6e-10 Score=94.34 Aligned_cols=183 Identities=17% Similarity=0.110 Sum_probs=100.3
Q ss_pred CCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchH--HHHHHHHhccCCCCCccEEecCCCCCCChHHHH
Q 025143 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDR--HLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (257)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~ 133 (257)
.+.++++++++....+. ....+....+++|+.|+++++. ++.. .+..+.. ...++|++|+++++ .+......
T Consensus 94 l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~---~~~~~L~~L~L~~N-~l~~~~~~ 167 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGT-APPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQ---WLKPGLKVLSIAQA-HSLNFSCE 167 (312)
T ss_dssp TSCCCEEEEEEEBCBSC-CCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHT---TCCTTCCEEEEESC-SCCCCCTT
T ss_pred cCCccEEEccCCcccch-hHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHH---hhcCCCcEEEeeCC-CCccchHH
Confidence 45677777776543211 0011112567788888887743 3322 2222221 12378888888776 44332211
Q ss_pred HHHhcCCCCcEEEecCCcccCH-HHHH-HH-HHcCCCCCEEeccCCCCCCH--HHHHHHHhhCCCCCEEeccCCCCCCHH
Q 025143 134 IISSTCPELKVFSIYWNVRVTD-IGIQ-HL-VKNCKHIIDLNLSGCKNLLD--KSLQLIADNYQELESLNLTRCVKLTDG 208 (257)
Q Consensus 134 ~l~~~~~~L~~L~l~~~~~~~~-~~~~-~l-~~~~~~L~~L~l~~~~~l~~--~~l~~l~~~~~~L~~L~l~~~~~l~~~ 208 (257)
. ...+++|++|+++++ .+.. .++. .+ ...+++|++|++++| .++. .....+...+++|++|+++++ .+++.
T Consensus 168 ~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 243 (312)
T 1wwl_A 168 Q-VRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDA 243 (312)
T ss_dssp T-CCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSS
T ss_pred H-hccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcc
Confidence 1 235678888888876 3333 2222 22 146778888888887 5652 223344455788888888885 45542
Q ss_pred HHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 209 GLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 209 ~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
.....+..+++|++|+++++. ++.... . ..++|+.|++++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~-l~~ip~--~--~~~~L~~L~Ls~ 283 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTG-LKQVPK--G--LPAKLSVLDLSY 283 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CSSCCS--S--CCSEEEEEECCS
T ss_pred cchhhhhhcCCCCEEECCCCc-cChhhh--h--ccCCceEEECCC
Confidence 211123346788888888854 442211 1 115677777654
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.94 E-value=1.4e-11 Score=101.29 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=39.3
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhc
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFS 243 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 243 (257)
.+++|++|++++| .++. +..-...+++|++|++++|...+. +...+.++++|++|++++|........ .+...
T Consensus 204 ~l~~L~~L~L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l 276 (328)
T 4fcg_A 204 NLQNLKSLKIRNS-PLSA--LGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLPL--DIHRL 276 (328)
T ss_dssp GCTTCCEEEEESS-CCCC--CCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCCT--TGGGC
T ss_pred CCCCCCEEEccCC-CCCc--CchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhhcch--hhhcC
Confidence 4556666666665 3332 111122356666666666532221 122234456666666666554432221 23445
Q ss_pred cccceeeccc
Q 025143 244 LSVRISNLLD 253 (257)
Q Consensus 244 ~~L~~L~l~~ 253 (257)
++|+.|++.+
T Consensus 277 ~~L~~L~L~~ 286 (328)
T 4fcg_A 277 TQLEKLDLRG 286 (328)
T ss_dssp TTCCEEECTT
T ss_pred CCCCEEeCCC
Confidence 5566665554
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.93 E-value=1e-10 Score=96.15 Aligned_cols=129 Identities=20% Similarity=0.226 Sum_probs=83.3
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|++|+++++ .+. .+......+++|++|+++++ .++. +..-...+++|++|++++|..... . ......++
T Consensus 182 l~~L~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~-~-p~~~~~l~ 253 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIR--SLPASIANLQNLKSLKIRNS-PLSA--LGPAIHHLPKLEELDLRGCTALRN-Y-PPIFGGRA 253 (328)
T ss_dssp STTCCEEEEEEE-CCC--CCCGGGGGCTTCCEEEEESS-CCCC--CCGGGGGCTTCCEEECTTCTTCCB-C-CCCTTCCC
T ss_pred CCCCCEEECcCC-CcC--cchHhhcCCCCCCEEEccCC-CCCc--CchhhccCCCCCEEECcCCcchhh-h-HHHhcCCC
Confidence 456666666554 332 11112346789999999877 4442 222235789999999999843322 1 22233489
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|++|++++|...+ .+..-+.++++|++|++++|+....... .+...++++.+.+..
T Consensus 254 ~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 254 PLKRLILKDCSNLL--TLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp CCCEEECTTCTTCC--BCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred CCCEEECCCCCchh--hcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence 99999999986443 2233357889999999999887664432 456778888877654
No 34
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.93 E-value=3.6e-09 Score=86.17 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=114.3
Q ss_pred CceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh
Q 025143 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (257)
Q Consensus 58 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 137 (257)
.++.++++++....- . ....+++|+.|+++++. +++... ...+++|++|+++++ .+.+.. . ..
T Consensus 42 ~L~~L~l~~~~i~~l---~--~~~~l~~L~~L~L~~n~-i~~~~~-------~~~l~~L~~L~L~~n-~l~~~~--~-~~ 104 (308)
T 1h6u_A 42 GITTLSAFGTGVTTI---E--GVQYLNNLIGLELKDNQ-ITDLAP-------LKNLTKITELELSGN-PLKNVS--A-IA 104 (308)
T ss_dssp TCCEEECTTSCCCCC---T--TGGGCTTCCEEECCSSC-CCCCGG-------GTTCCSCCEEECCSC-CCSCCG--G-GT
T ss_pred CcCEEEeeCCCccCc---h--hhhccCCCCEEEccCCc-CCCChh-------HccCCCCCEEEccCC-cCCCch--h-hc
Confidence 577888877643221 1 13678999999999863 443211 245799999999988 455432 2 34
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 217 (257)
.+++|++|+++++ .+++. .. ...+++|++|++++| .+++. .. ...+++|++|++++| .+++ +.. +..+
T Consensus 105 ~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~--~~~-l~~l 172 (308)
T 1h6u_A 105 GLQSIKTLDLTST-QITDV--TP-LAGLSNLQVLYLDLN-QITNI--SP-LAGLTNLQYLSIGNA-QVSD--LTP-LANL 172 (308)
T ss_dssp TCTTCCEEECTTS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCC--GG-GGGCTTCCEEECCSS-CCCC--CGG-GTTC
T ss_pred CCCCCCEEECCCC-CCCCc--hh-hcCCCCCCEEECCCC-ccCcC--cc-ccCCCCccEEEccCC-cCCC--Chh-hcCC
Confidence 6899999999987 55542 22 357899999999998 56542 22 345999999999997 5664 222 6788
Q ss_pred CCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 218 SSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 218 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
++|++|+++++. +++... ....++|+.|++.+
T Consensus 173 ~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 173 SKLTTLKADDNK-ISDISP---LASLPNLIEVHLKN 204 (308)
T ss_dssp TTCCEEECCSSC-CCCCGG---GGGCTTCCEEECTT
T ss_pred CCCCEEECCCCc-cCcChh---hcCCCCCCEEEccC
Confidence 999999999964 544332 56778899988765
No 35
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.92 E-value=2.6e-09 Score=86.31 Aligned_cols=163 Identities=19% Similarity=0.189 Sum_probs=110.1
Q ss_pred CceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh
Q 025143 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (257)
Q Consensus 58 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 137 (257)
.++.++++++....- .. ...+++|+.|+++++. +++... ...+++|++|+++++ .+.+.. . ..
T Consensus 47 ~L~~L~l~~~~i~~~---~~--~~~l~~L~~L~L~~n~-l~~~~~-------l~~l~~L~~L~l~~n-~l~~~~--~-l~ 109 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV---QG--IQYLPNVTKLFLNGNK-LTDIKP-------LANLKNLGWLFLDEN-KVKDLS--S-LK 109 (291)
T ss_dssp TCCEEECTTSCCCCC---TT--GGGCTTCCEEECCSSC-CCCCGG-------GTTCTTCCEEECCSS-CCCCGG--G-GT
T ss_pred cccEEEccCCCcccC---hh--HhcCCCCCEEEccCCc-cCCCcc-------cccCCCCCEEECCCC-cCCCCh--h-hc
Confidence 467777776543221 11 3678899999999853 433211 245799999999987 555421 2 35
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 217 (257)
.+++|++|+++++ .+++- ..+ ..+++|++|++++| .+++. ..+ ..+++|++|++++| .+++.. . +..+
T Consensus 110 ~l~~L~~L~L~~n-~i~~~--~~l-~~l~~L~~L~l~~n-~l~~~--~~l-~~l~~L~~L~L~~N-~l~~~~--~-l~~l 177 (291)
T 1h6t_A 110 DLKKLKSLSLEHN-GISDI--NGL-VHLPQLESLYLGNN-KITDI--TVL-SRLTKLDTLSLEDN-QISDIV--P-LAGL 177 (291)
T ss_dssp TCTTCCEEECTTS-CCCCC--GGG-GGCTTCCEEECCSS-CCCCC--GGG-GGCTTCSEEECCSS-CCCCCG--G-GTTC
T ss_pred cCCCCCEEECCCC-cCCCC--hhh-cCCCCCCEEEccCC-cCCcc--hhh-ccCCCCCEEEccCC-ccccch--h-hcCC
Confidence 6799999999987 55542 223 47889999999998 56652 333 34899999999986 565432 2 6788
Q ss_pred CCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 218 SSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 218 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
++|++|+++++ .+++.. .+...++|+.|++.+
T Consensus 178 ~~L~~L~L~~N-~i~~l~---~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 178 TKLQNLYLSKN-HISDLR---ALAGLKNLDVLELFS 209 (291)
T ss_dssp TTCCEEECCSS-CCCBCG---GGTTCTTCSEEEEEE
T ss_pred CccCEEECCCC-cCCCCh---hhccCCCCCEEECcC
Confidence 99999999996 455442 245677888888764
No 36
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.91 E-value=5.2e-10 Score=91.28 Aligned_cols=162 Identities=19% Similarity=0.164 Sum_probs=82.0
Q ss_pred cCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChH--HHHHHHh-cCCCCcEEEecCCcccCHHHH
Q 025143 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK--GIEIISS-TCPELKVFSIYWNVRVTDIGI 158 (257)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~--~l~~l~~-~~~~L~~L~l~~~~~~~~~~~ 158 (257)
.+++|++|+++++. ++......+. ...+++|++|+++++ .+.+. .+..+.. ..++|++|+++++ .++....
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLL---EATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSS---SCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCT
T ss_pred CcCCccEEEccCCc-ccchhHHHHH---HhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchH
Confidence 46677777777642 3211111100 134577777777766 34332 2222211 1267777777765 4433221
Q ss_pred HHHHHcCCCCCEEeccCCCCCCHH-HHH-HH-HhhCCCCCEEeccCCCCCCH--HHHHHHHhcCCCCCeEecCCCCCCch
Q 025143 159 QHLVKNCKHIIDLNLSGCKNLLDK-SLQ-LI-ADNYQELESLNLTRCVKLTD--GGLQKILIKCSSLRSLNLYALSGYIM 233 (257)
Q Consensus 159 ~~l~~~~~~L~~L~l~~~~~l~~~-~l~-~l-~~~~~~L~~L~l~~~~~l~~--~~l~~l~~~~~~L~~L~l~~c~~~~~ 233 (257)
..+ ..+++|++|++++| .+... .+. .+ ...+++|++|++++| .++. .....++.++++|++|+++++. +++
T Consensus 167 ~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 242 (312)
T 1wwl_A 167 EQV-RVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRD 242 (312)
T ss_dssp TTC-CCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCS
T ss_pred HHh-ccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCc
Confidence 222 25667777777776 33332 221 22 134677777777775 4552 2233445566777777777743 433
Q ss_pred HHHHHHHHhccccceeeccc
Q 025143 234 MSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 234 ~~~~~~~~~~~~L~~L~l~~ 253 (257)
..........++|+.|++++
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTT
T ss_pred ccchhhhhhcCCCCEEECCC
Confidence 21000112346677766654
No 37
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.90 E-value=1.6e-09 Score=87.58 Aligned_cols=145 Identities=21% Similarity=0.228 Sum_probs=103.8
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++. +.+. .. ...+++|++|+++++ .+.+..- ...+++|++|+++++ .+++ +..
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~--~~-----~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~--~~~ 107 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSV--QG-----IQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKD--LSS 107 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCC--TT-----GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCC--GGG
T ss_pred hhcCcccEEEccCCC-cccC--hh-----HhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCC-cCCC--Chh
Confidence 345789999998863 3322 11 133699999999988 5554322 457899999999987 5554 223
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHH
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCI 240 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~ 240 (257)
...+++|++|++++| .+++ +..+. .+++|++|++++| .+++. ..+..+++|++|++++|. +++... .
T Consensus 108 -l~~l~~L~~L~L~~n-~i~~--~~~l~-~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~---l 174 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHN-GISD--INGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---L 174 (291)
T ss_dssp -GTTCTTCCEEECTTS-CCCC--CGGGG-GCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGG---G
T ss_pred -hccCCCCCEEECCCC-cCCC--Chhhc-CCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCc-cccchh---h
Confidence 347899999999998 5665 23343 4999999999996 56643 336788999999999964 544432 5
Q ss_pred Hhccccceeeccc
Q 025143 241 IFSLSVRISNLLD 253 (257)
Q Consensus 241 ~~~~~L~~L~l~~ 253 (257)
...++|+.|++.+
T Consensus 175 ~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 175 AGLTKLQNLYLSK 187 (291)
T ss_dssp TTCTTCCEEECCS
T ss_pred cCCCccCEEECCC
Confidence 6778899998765
No 38
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.89 E-value=1.8e-10 Score=92.00 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=54.1
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++. ++. +....+..+++|++|+++++ .+..... .....+++|++|+++++ .++......
T Consensus 58 ~~l~~L~~L~l~~n~-l~~-----i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~ 128 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNK-LQT-----LPAGIFKELKNLETLWVTDN-KLQALPI-GVFDQLVNLAELRLDRN-QLKSLPPRV 128 (270)
T ss_dssp SSCTTCCEEECCSSC-CSC-----CCTTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCTTT
T ss_pred cCCCCCCEEECCCCc-cCe-----eChhhhcCCCCCCEEECCCC-cCCcCCH-hHcccccCCCEEECCCC-ccCeeCHHH
Confidence 455566666665532 221 11111233456666666554 2222111 11123455666666544 222211111
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYAL 228 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 228 (257)
...+++|++|++++| .++......+ ..+++|++|+++++ .++.... ..+.++++|++|+++++
T Consensus 129 -~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 129 -FDSLTKLTYLSLGYN-ELQSLPKGVF-DKLTSLKELRLYNN-QLKRVPE-GAFDKLTELKTLKLDNN 191 (270)
T ss_dssp -TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred -hCcCcCCCEEECCCC-cCCccCHhHc-cCCcccceeEecCC-cCcEeCh-hHhccCCCcCEEECCCC
Confidence 124455555555554 3332111111 22555555555553 2322111 11234455555555553
No 39
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.87 E-value=2.1e-09 Score=95.27 Aligned_cols=163 Identities=20% Similarity=0.182 Sum_probs=95.4
Q ss_pred CceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh
Q 025143 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (257)
Q Consensus 58 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 137 (257)
.++.++++......- . .+..+++|+.|+++++. +++... ...+++|+.|+|+++ .+.+.. . ..
T Consensus 44 ~L~~L~l~~n~i~~l---~--~l~~l~~L~~L~Ls~N~-l~~~~~-------l~~l~~L~~L~Ls~N-~l~~l~--~-l~ 106 (605)
T 1m9s_A 44 SIDQIIANNSDIKSV---Q--GIQYLPNVTKLFLNGNK-LTDIKP-------LTNLKNLGWLFLDEN-KIKDLS--S-LK 106 (605)
T ss_dssp TCCCCBCTTCCCCCC---T--TGGGCTTCCEEECTTSC-CCCCGG-------GGGCTTCCEEECCSS-CCCCCT--T-ST
T ss_pred CCCEEECcCCCCCCC---h--HHccCCCCCEEEeeCCC-CCCChh-------hccCCCCCEEECcCC-CCCCCh--h-hc
Confidence 455566655432211 1 13567888888887753 332111 123578888888876 444321 1 24
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 217 (257)
.+++|++|+++++ .++. +..+ ..+++|+.|++++| .+++. .. ...+++|+.|++++| .+++.. . +..+
T Consensus 107 ~l~~L~~L~Ls~N-~l~~--l~~l-~~l~~L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N-~l~~~~--~-l~~l 174 (605)
T 1m9s_A 107 DLKKLKSLSLEHN-GISD--INGL-VHLPQLESLYLGNN-KITDI--TV-LSRLTKLDTLSLEDN-QISDIV--P-LAGL 174 (605)
T ss_dssp TCTTCCEEECTTS-CCCC--CGGG-GGCTTCSEEECCSS-CCCCC--GG-GGSCTTCSEEECCSS-CCCCCG--G-GTTC
T ss_pred cCCCCCEEEecCC-CCCC--Cccc-cCCCccCEEECCCC-ccCCc--hh-hcccCCCCEEECcCC-cCCCch--h-hccC
Confidence 5678888888876 4443 2222 36778888888887 55552 22 334788888888775 454321 2 5677
Q ss_pred CCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 218 SSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 218 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
++|+.|+|++|. +++.. .+...++|+.|++.+
T Consensus 175 ~~L~~L~Ls~N~-i~~l~---~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 175 TKLQNLYLSKNH-ISDLR---ALAGLKNLDVLELFS 206 (605)
T ss_dssp TTCCEEECCSSC-CCBCG---GGTTCTTCSEEECCS
T ss_pred CCCCEEECcCCC-CCCCh---HHccCCCCCEEEccC
Confidence 888888888753 44431 244566777777654
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.86 E-value=1.2e-08 Score=87.76 Aligned_cols=121 Identities=21% Similarity=0.179 Sum_probs=61.0
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|++|+++++ .+.+... ...+++|++|+++++ .+++. .. ...+++|+.|++++| .+++.. . ...++
T Consensus 264 l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L~L~~n-~l~~~~--~-~~~l~ 331 (466)
T 1o6v_A 264 LTKLTELKLGAN-QISNISP---LAGLTALTNLELNEN-QLEDI--SP-ISNLKNLTYLTLYFN-NISDIS--P-VSSLT 331 (466)
T ss_dssp CTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCSCC--GG-GGGCTTCSEEECCSS-CCSCCG--G-GGGCT
T ss_pred CCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCC-cccCc--hh-hcCCCCCCEEECcCC-cCCCch--h-hccCc
Confidence 455555555554 2222111 234556666666554 33321 11 235666666666666 444321 1 23466
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|+.|++++| .+++. . -+.++++|++|++++|. +++... ....++|+.|++.+
T Consensus 332 ~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 332 KLQRLFFYNN-KVSDV--S-SLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLND 384 (466)
T ss_dssp TCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCC
T ss_pred cCCEeECCCC-ccCCc--h-hhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccC
Confidence 7777777665 34432 2 24566777777777654 333221 34556666666554
No 41
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.86 E-value=2.6e-09 Score=62.97 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=34.2
Q ss_pred CcHHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCceEee
Q 025143 21 TVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63 (257)
Q Consensus 21 ~~pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~ 63 (257)
+++|++..||++|+..|+.+++.|||+|+.. +.++..|+.+|
T Consensus 12 LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~-~~~~~lW~~ld 53 (53)
T 1fs1_A 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESLWQTLD 53 (53)
T ss_dssp SCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH-HTCGGGC----
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCChHHHHhcC
Confidence 3358999999999999999999999999887 67888998875
No 42
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=2.6e-08 Score=82.72 Aligned_cols=159 Identities=15% Similarity=0.176 Sum_probs=110.3
Q ss_pred cCCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCC--Ch--
Q 025143 54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKI--SD-- 129 (257)
Q Consensus 54 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~--~~-- 129 (257)
...+.++++.++++.... +.....++|++|++..+ .+++..+..++.. .+|+|++|+|+.+.+. .+
T Consensus 169 ~~~P~L~~L~L~g~~~l~------l~~~~~~~L~~L~L~~~-~l~~~~l~~l~~~---~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS------IGKKPRPNLKSLEIISG-GLPDSVVEDILGS---DLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp HTCTTCCEEEEECCBTCB------CCSCBCTTCSEEEEECS-BCCHHHHHHHHHS---BCTTCCEEEEECBCGGGTCCSC
T ss_pred hcCCCCcEEEEeCCCCce------eccccCCCCcEEEEecC-CCChHHHHHHHHc---cCCCCcEEEEeccccccccchh
Confidence 344566666665542110 01113689999999875 5788888777642 3699999998532111 11
Q ss_pred -HHHHHHH--hcCCCCcEEEecCCcccCHHHHHHHHH--cCCCCCEEeccCCCCCCHHHHHHHHh---hCCCCCEEeccC
Q 025143 130 -KGIEIIS--STCPELKVFSIYWNVRVTDIGIQHLVK--NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTR 201 (257)
Q Consensus 130 -~~l~~l~--~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~ 201 (257)
.++..+. ..+|+|++|.+.+| .+++.+...++. .+|+|++|+++.| .+++.+..++.. .+++|+.|++++
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCC
Confidence 1121121 25799999999977 777777666664 5789999999987 799988877764 479999999998
Q ss_pred CCCCCHHHHHHHHhcCCCCCeEecCC
Q 025143 202 CVKLTDGGLQKILIKCSSLRSLNLYA 227 (257)
Q Consensus 202 ~~~l~~~~l~~l~~~~~~L~~L~l~~ 227 (257)
| .+++.++..+...+ ...++++.
T Consensus 317 n-~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 317 N-YLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp B-BCCHHHHHHHHHHC--CSEEECCS
T ss_pred C-cCCHHHHHHHHHHc--CCEEEecC
Confidence 6 79999999987655 45577766
No 43
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.83 E-value=1.7e-09 Score=95.92 Aligned_cols=145 Identities=21% Similarity=0.233 Sum_probs=103.4
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++. +.+. .. ...+++|+.|+|+++ .+.+... ...+++|+.|+|+++ .++. +..
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l--~~-----l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~--l~~ 104 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSV--QG-----IQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKD--LSS 104 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCC--TT-----GGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCC--CTT
T ss_pred hcCCCCCEEECcCCC-CCCC--hH-----HccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCC--Chh
Confidence 455788889998753 3321 11 234699999999988 5544321 457899999999987 5543 223
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHH
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCI 240 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~ 240 (257)
+ ..+++|++|++++| .+++ +..+. .+++|+.|++++| .+++. ..+..+++|+.|+|++|. +++... +
T Consensus 105 l-~~l~~L~~L~Ls~N-~l~~--l~~l~-~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l 171 (605)
T 1m9s_A 105 L-KDLKKLKSLSLEHN-GISD--INGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---L 171 (605)
T ss_dssp S-TTCTTCCEEECTTS-CCCC--CGGGG-GCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG---G
T ss_pred h-ccCCCCCEEEecCC-CCCC--Ccccc-CCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh---h
Confidence 3 47899999999998 5665 33343 4999999999996 56643 346789999999999975 443322 5
Q ss_pred Hhccccceeeccc
Q 025143 241 IFSLSVRISNLLD 253 (257)
Q Consensus 241 ~~~~~L~~L~l~~ 253 (257)
...++|+.|++.+
T Consensus 172 ~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 172 AGLTKLQNLYLSK 184 (605)
T ss_dssp TTCTTCCEEECCS
T ss_pred ccCCCCCEEECcC
Confidence 6778899998875
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.83 E-value=3e-10 Score=91.36 Aligned_cols=166 Identities=13% Similarity=0.075 Sum_probs=109.0
Q ss_pred CCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHH
Q 025143 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (257)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ 134 (257)
..+.++.+++++......- ....+..+++|+.|+++++. ++... ......+++|++|+++++ .+......
T Consensus 78 ~l~~L~~L~l~~n~~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~~- 147 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSV--DPATFHGLGRLHTLHLDRCG-LQELG-----PGLFRGLAALQYLYLQDN-ALQALPDD- 147 (285)
T ss_dssp TCTTCCEEECCSCTTCCCC--CTTTTTTCTTCCEEECTTSC-CCCCC-----TTTTTTCTTCCEEECCSS-CCCCCCTT-
T ss_pred CccCCCEEeCCCCCCcccc--CHHHhcCCcCCCEEECCCCc-CCEEC-----HhHhhCCcCCCEEECCCC-cccccCHh-
Confidence 4467888999876422111 01123678899999999853 33211 112345799999999987 44432211
Q ss_pred HHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHH
Q 025143 135 ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKIL 214 (257)
Q Consensus 135 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 214 (257)
....+++|++|+++++ .++......+ ..+++|++|++++| .+++.....+. .+++|++|+++++ .+++... ..+
T Consensus 148 ~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~-~~~ 221 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGN-RISSVPERAF-RGLHSLDRLLLHQN-RVAHVHPHAFR-DLGRLMTLYLFAN-NLSALPT-EAL 221 (285)
T ss_dssp TTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSS-CCSCCCH-HHH
T ss_pred HhccCCCccEEECCCC-cccccCHHHh-cCccccCEEECCCC-cccccCHhHcc-CcccccEeeCCCC-cCCcCCH-HHc
Confidence 1245799999999987 5553222222 36789999999998 56653333343 4899999999996 5664332 346
Q ss_pred hcCCCCCeEecCCCCCCchHHH
Q 025143 215 IKCSSLRSLNLYALSGYIMMSQ 236 (257)
Q Consensus 215 ~~~~~L~~L~l~~c~~~~~~~~ 236 (257)
..+++|++|++++++...+...
T Consensus 222 ~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 222 APLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTCTTCCEEECCSSCEECSGGG
T ss_pred ccCcccCEEeccCCCccCCCCc
Confidence 7889999999999776655543
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.83 E-value=2.8e-10 Score=91.05 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=70.8
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++. +++. . ....+++|++|+++++ .+..... .....+++|++|+++++ .++.....
T Consensus 60 ~~l~~L~~L~l~~n~-l~~~--~-----~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~- 127 (272)
T 3rfs_A 60 QYLPNVRYLALGGNK-LHDI--S-----ALKELTNLTYLILTGN-QLQSLPN-GVFDKLTNLKELVLVEN-QLQSLPDG- 127 (272)
T ss_dssp GGCTTCCEEECTTSC-CCCC--G-----GGTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTT-
T ss_pred ccCCCCcEEECCCCC-CCCc--h-----hhcCCCCCCEEECCCC-ccCccCh-hHhcCCcCCCEEECCCC-cCCccCHH-
Confidence 456667777776642 3321 1 1234566666666665 3332111 11134566666666655 33321111
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHH
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCI 240 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~ 240 (257)
....+++|++|++++| .++.... .....+++|++|++++| .+++.. ...+.++++|++|+++++. +++... ...
T Consensus 128 ~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~ 201 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLP-EGVFDKLTQLKDLRLYQNQ-LKSVPD-GVF 201 (272)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-TTT
T ss_pred HhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccC-HHHhcCCccCCEEECCCCc-CCccCH-HHH
Confidence 1124556666666665 3432111 11223566666666664 343211 1123455666666666643 322211 112
Q ss_pred Hhccccceeeccc
Q 025143 241 IFSLSVRISNLLD 253 (257)
Q Consensus 241 ~~~~~L~~L~l~~ 253 (257)
...++|+.|++.+
T Consensus 202 ~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 202 DRLTSLQYIWLHD 214 (272)
T ss_dssp TTCTTCCEEECCS
T ss_pred hCCcCCCEEEccC
Confidence 3445555555543
No 46
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.82 E-value=1.5e-09 Score=88.38 Aligned_cols=185 Identities=19% Similarity=0.153 Sum_probs=106.8
Q ss_pred CceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChH----HHH
Q 025143 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK----GIE 133 (257)
Q Consensus 58 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~----~l~ 133 (257)
.++.+.+...................++|++|+++++. +.......+.. ..+++|++|+++++ .+... ...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~---~~~~~L~~L~Ls~n-~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLE---ATGLALSSLRLRNV-SWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSS---CCCBCCSSCEEESC-CCSSTTSSHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhh---ccCCCCCEEEeecc-cccchhhhhHHH
Confidence 35666666654433333222222344668888888753 32211111100 34688999999887 45431 112
Q ss_pred HHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCH-HHHHHH--HhhCCCCCEEeccCCCCCC--HH
Q 025143 134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLI--ADNYQELESLNLTRCVKLT--DG 208 (257)
Q Consensus 134 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l--~~~~~~L~~L~l~~~~~l~--~~ 208 (257)
.+ ..+++|++|+++++ .++......+ ..+++|++|++++| .+.. ..+... ...+++|++|++++| .++ +.
T Consensus 140 ~~-~~~~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 214 (310)
T 4glp_A 140 QQ-WLKPGLKVLSIAQA-HSPAFSCEQV-RAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTG 214 (310)
T ss_dssp HT-TBCSCCCEEEEECC-SSCCCCTTSC-CCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHH
T ss_pred Hh-hhccCCCEEEeeCC-CcchhhHHHh-ccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHH
Confidence 22 26789999999977 4543221222 36789999999998 4443 333211 135889999999996 565 23
Q ss_pred HHHHHHhcCCCCCeEecCCCCCCchHH--HHHHHHhccccceeeccc
Q 025143 209 GLQKILIKCSSLRSLNLYALSGYIMMS--QYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 209 ~l~~l~~~~~~L~~L~l~~c~~~~~~~--~~~~~~~~~~L~~L~l~~ 253 (257)
....++.++++|++|+++++. +++.. ........++|+.|++++
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred HHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCC
Confidence 333356788999999999854 44331 001111236888888764
No 47
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.82 E-value=9.2e-10 Score=87.62 Aligned_cols=143 Identities=19% Similarity=0.209 Sum_probs=76.6
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
+.++.+++++.....- . ....+++|+.|+++++ .+++... ...+++|++|+++++ .+.+. ..+.
T Consensus 41 ~~L~~L~l~~n~i~~l---~--~l~~l~~L~~L~L~~N-~i~~~~~-------l~~l~~L~~L~L~~N-~l~~l--~~~~ 104 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSL---A--GMQFFTNLKELHLSHN-QISDLSP-------LKDLTKLEELSVNRN-RLKNL--NGIP 104 (263)
T ss_dssp TTCSEEECTTSCCCCC---T--TGGGCTTCCEEECCSS-CCCCCGG-------GTTCSSCCEEECCSS-CCSCC--TTCC
T ss_pred CcCcEEECcCCCcccc---h--HHhhCCCCCEEECCCC-ccCCChh-------hccCCCCCEEECCCC-ccCCc--Cccc
Confidence 3456666665532211 1 1245677777777764 2332111 234577777777766 33331 1111
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhc
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 216 (257)
. ++|++|+++++ .+++. .. ...+++|+.|++++| .+++. ..+ ..+++|++|+++++ .+++. ..+..
T Consensus 105 -~-~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~--~~l-~~l~~L~~L~L~~N-~i~~~---~~l~~ 170 (263)
T 1xeu_A 105 -S-ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSI--VML-GFLSKLEVLDLHGN-EITNT---GGLTR 170 (263)
T ss_dssp -C-SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBC--GGG-GGCTTCCEEECTTS-CCCBC---TTSTT
T ss_pred -c-CcccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCC--hHH-ccCCCCCEEECCCC-cCcch---HHhcc
Confidence 1 67777777765 44432 22 235667777777776 45542 222 33677777777774 45543 22456
Q ss_pred CCCCCeEecCCCC
Q 025143 217 CSSLRSLNLYALS 229 (257)
Q Consensus 217 ~~~L~~L~l~~c~ 229 (257)
+++|+.|+++++.
T Consensus 171 l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 171 LKKVNWIDLTGQK 183 (263)
T ss_dssp CCCCCEEEEEEEE
T ss_pred CCCCCEEeCCCCc
Confidence 6777777776643
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.82 E-value=6.2e-11 Score=96.38 Aligned_cols=35 Identities=6% Similarity=0.110 Sum_probs=18.1
Q ss_pred CCCceEeecccccchhhHHHHHhcCccCCCccEEeccCC
Q 025143 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (257)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 94 (257)
.+.++.+++++..... +... ...+++|+.|+++++
T Consensus 77 ~~~L~~L~Ls~n~i~~--l~~~--~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 77 TTSLKYLDLSFNGVIT--MSSN--FLGLEQLEHLDFQHS 111 (306)
T ss_dssp CSCCCEEECCSCSEEE--EEEE--EETCTTCCEEECTTS
T ss_pred ccccCEEECCCCcccc--Chhh--cCCCCCCCEEECCCC
Confidence 4567777777653221 0001 244566666666653
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.81 E-value=2.2e-10 Score=98.21 Aligned_cols=183 Identities=15% Similarity=0.080 Sum_probs=84.9
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
+.++.+++++...... ..-.+..+++|+.|+++++..... +.......+++|++|+++++ .+....... .
T Consensus 30 ~~l~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~n~~~~~-----i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL---NETSFSRLQDLQFLKVEQQTPGLV-----IRNNTFRGLSSLIILKLDYN-QFLQLETGA-F 99 (455)
T ss_dssp TTCCEEECCSSCCCEE---CTTTTSSCTTCCEEECCCCSTTCE-----ECTTTTTTCTTCCEEECTTC-TTCEECTTT-T
T ss_pred CccCEEEecCCccCcC---ChhHhccCccccEEECcCCcccce-----ECcccccccccCCEEeCCCC-ccCccChhh-c
Confidence 4566666665432210 011125566777777766432111 00011233567777777665 333221111 2
Q ss_pred hcCCCCcEEEecCCcccCHHHHHH-HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHh
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQH-LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI 215 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 215 (257)
..+++|++|+++++ .++...... ....+++|++|++++| .++......+...+++|++|+++++ .++...... +.
T Consensus 100 ~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-l~ 175 (455)
T 3v47_A 100 NGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEED-LL 175 (455)
T ss_dssp TTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTT-SG
T ss_pred cCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC-cccccChhh-hh
Confidence 34567777777765 454433222 1235667777777765 4443222222334677777777664 333221111 11
Q ss_pred c--CCCCCeEecCCCCCCchHHHHH------HHHhccccceeeccc
Q 025143 216 K--CSSLRSLNLYALSGYIMMSQYL------CIIFSLSVRISNLLD 253 (257)
Q Consensus 216 ~--~~~L~~L~l~~c~~~~~~~~~~------~~~~~~~L~~L~l~~ 253 (257)
. .++|+.|+++++.......... .....++|+.|++++
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 221 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCC
Confidence 1 2466677776644221111000 011335677777765
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.80 E-value=9.5e-09 Score=88.42 Aligned_cols=121 Identities=20% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|++|+++++ .+.+... ...+++|++|+++++ .++... . ...+++|++|++++| .+++ +..+ ..++
T Consensus 242 l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~L~~n-~l~~--~~~~-~~l~ 309 (466)
T 1o6v_A 242 LTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGAN-QISNIS--P-LAGLTALTNLELNEN-QLED--ISPI-SNLK 309 (466)
T ss_dssp CTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCCCCG--G-GTTCTTCSEEECCSS-CCSC--CGGG-GGCT
T ss_pred CCCCCEEECCCC-ccccchh---hhcCCCCCEEECCCC-ccCccc--c-ccCCCccCeEEcCCC-cccC--chhh-cCCC
Confidence 455566665554 2222111 234566666666655 333211 1 235666777777766 4443 1222 3477
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|++|++++| .+++... +..+++|++|++++|. +++.. .....++|+.|++.+
T Consensus 310 ~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 310 NLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS---SLANLTNINWLSAGH 362 (466)
T ss_dssp TCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCS
T ss_pred CCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch---hhccCCCCCEEeCCC
Confidence 7777777775 3443221 4567777777777763 33331 334556677776654
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.79 E-value=6.2e-11 Score=96.40 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=73.0
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhC
Q 025143 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (257)
Q Consensus 112 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 191 (257)
.+++|++|+++++ .+...........+++|++|+++++ .++...... ...+++|++|++++| .+++..+......+
T Consensus 99 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l 174 (306)
T 2z66_A 99 GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGI-FNGLSSLEVLKMAGN-SFQENFLPDIFTEL 174 (306)
T ss_dssp TCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTT-TTTCTTCCEEECTTC-EEGGGEECSCCTTC
T ss_pred CCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCccchhh-cccCcCCCEEECCCC-ccccccchhHHhhC
Confidence 3566666666655 2322111111234677777777765 333211111 235677888888776 44432222223347
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 192 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
++|++|++++| .+++... ..+..+++|++|+++++. +++.... .....++|+.|++.+
T Consensus 175 ~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 175 RNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSL 232 (306)
T ss_dssp TTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CSBCCSG-GGTTCTTCCEEECTT
T ss_pred cCCCEEECCCC-CcCCcCH-HHhcCCCCCCEEECCCCc-cCccChh-hccCcccCCEeECCC
Confidence 88888888885 4554222 224567888888888854 3322111 234567788887764
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.78 E-value=7.1e-10 Score=95.10 Aligned_cols=35 Identities=20% Similarity=0.060 Sum_probs=17.7
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCC
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 94 (257)
+..+.+++++.....- ..-.+..+++|+.|+++++
T Consensus 75 ~~l~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls~n 109 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI---QADTFRHLHHLEVLQLGRN 109 (452)
T ss_dssp TTCSEEECCSSCCCEE---CTTTTTTCTTCCEEECCSS
T ss_pred CCccEEECcCCcCceE---CHHHcCCCCCCCEEECCCC
Confidence 4567777776532210 0111245566666666653
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.78 E-value=9e-10 Score=91.36 Aligned_cols=111 Identities=19% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|++|+++++ .+...........+++|++|+++++..++......+ ..+++|++|++++| .++......+. .++
T Consensus 123 l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~ 198 (353)
T 2z80_A 123 LSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDAS-DLQSYEPKSLK-SIQ 198 (353)
T ss_dssp CTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET-TCCEECTTTTT-TCS
T ss_pred CccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCC-CcCccCHHHHh-ccc
Confidence 456666666554 232111000122456666666665422222111111 24455666666655 33332112222 256
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCC
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS 229 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~ 229 (257)
+|++|+++++ .++.. ...+...+++|++|+++++.
T Consensus 199 ~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 199 NVSHLILHMK-QHILL-LEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEEEEEECS-CSTTH-HHHHHHHTTTEEEEEEESCB
T ss_pred cCCeecCCCC-ccccc-hhhhhhhcccccEEECCCCc
Confidence 6666666664 34322 12233456667777666643
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.78 E-value=6.3e-10 Score=95.11 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=7.1
Q ss_pred ccCCCccEEeccC
Q 025143 81 PRYRHVREINLEF 93 (257)
Q Consensus 81 ~~~~~L~~L~l~~ 93 (257)
..+++|+.|++++
T Consensus 85 ~~l~~L~~L~Ls~ 97 (440)
T 3zyj_A 85 KHLRHLEILQLSR 97 (440)
T ss_dssp SSCSSCCEEECCS
T ss_pred hCCCCCCEEECCC
Confidence 4455555555554
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.77 E-value=4.1e-09 Score=90.21 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=27.6
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 150 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 150 (257)
..+++|+.|+++++ .+++..... ...+.+++|++|+++++ .+.......+...+++|++|+++++
T Consensus 100 ~~l~~L~~L~L~~n-~l~~~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 100 NGLANLEVLTLTQC-NLDGAVLSG---NFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTCTTCCEEECTTS-CCBTHHHHS---STTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred cCcccCCEEeCCCC-CCCccccCc---ccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence 34455555555553 233222111 11233456666666554 2322211111234555566655544
No 56
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.75 E-value=2.7e-10 Score=101.11 Aligned_cols=86 Identities=21% Similarity=0.217 Sum_probs=39.6
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 025143 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (257)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 218 (257)
+++|++|+++++ .+++..+......+++|++|++++| .++......+ ..+++|++|++++| .+++.. ...+.+++
T Consensus 447 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~ 521 (606)
T 3vq2_A 447 LTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVF-DTLHRLQLLNMSHN-NLLFLD-SSHYNQLY 521 (606)
T ss_dssp CTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCEE-GGGTTTCT
T ss_pred CCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhhh-cccccCCEEECCCC-cCCCcC-HHHccCCC
Confidence 455555555544 3332111111234556666666665 3433211222 23566666666664 343321 12234556
Q ss_pred CCCeEecCCCC
Q 025143 219 SLRSLNLYALS 229 (257)
Q Consensus 219 ~L~~L~l~~c~ 229 (257)
+|++|++++|.
T Consensus 522 ~L~~L~l~~N~ 532 (606)
T 3vq2_A 522 SLSTLDCSFNR 532 (606)
T ss_dssp TCCEEECTTSC
T ss_pred cCCEEECCCCc
Confidence 66666666643
No 57
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.75 E-value=3.7e-09 Score=78.84 Aligned_cols=134 Identities=19% Similarity=0.249 Sum_probs=86.2
Q ss_pred CccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHH
Q 025143 80 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (257)
Q Consensus 80 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~ 159 (257)
...+++|+.|+++++ .++.- ..+.. ..++|+.|+++++ .+.+. . ....+++|++|+++++ .++.-. .
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i--~~~~~----~~~~L~~L~Ls~N-~l~~~--~-~l~~l~~L~~L~Ls~N-~l~~~~-~ 81 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVI--ENLGA----TLDQFDAIDFSDN-EIRKL--D-GFPLLRRLKTLLVNNN-RICRIG-E 81 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSC--CCGGG----GTTCCSEEECCSS-CCCEE--C-CCCCCSSCCEEECCSS-CCCEEC-S
T ss_pred cCCcCCceEEEeeCC-CCchh--HHhhh----cCCCCCEEECCCC-CCCcc--c-ccccCCCCCEEECCCC-cccccC-c
Confidence 356778999999885 34421 11211 1358999999987 55542 1 2345789999999977 555321 1
Q ss_pred HHHHcCCCCCEEeccCCCCCCHHH-HHHHHhhCCCCCEEeccCCCCCCHH--HHHHHHhcCCCCCeEecCCCC
Q 025143 160 HLVKNCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRCVKLTDG--GLQKILIKCSSLRSLNLYALS 229 (257)
Q Consensus 160 ~l~~~~~~L~~L~l~~~~~l~~~~-l~~l~~~~~~L~~L~l~~~~~l~~~--~l~~l~~~~~~L~~L~l~~c~ 229 (257)
.+...+++|++|++++| .+++-. +..+ ..+++|++|++++++ ++.. .-..++..+|+|+.|+++++.
T Consensus 82 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 82 GLDQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CHHHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred chhhcCCCCCEEECCCC-cCCcchhhHhh-hcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 22247889999999997 565421 1223 358999999998864 4321 112246788999999998754
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.75 E-value=9.6e-10 Score=87.91 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=101.2
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.++++++. +++. .. ...+++|++|+++++ .+.+. . ....+++|++|+++++ .++.....
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~--~~-----l~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~n-~l~~~~~~- 103 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSV--QG-----IQYLPNVRYLALGGN-KLHDI--S-ALKELTNLTYLILTGN-QLQSLPNG- 103 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCC--TT-----GGGCTTCCEEECTTS-CCCCC--G-GGTTCTTCCEEECTTS-CCCCCCTT-
T ss_pred ccccceeeeeeCCCC-cccc--cc-----cccCCCCcEEECCCC-CCCCc--h-hhcCCCCCCEEECCCC-ccCccChh-
Confidence 455789999998853 3321 11 133699999999988 45542 1 2346899999999987 55532211
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHH
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCI 240 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~ 240 (257)
....+++|++|++++| .++.... .....+++|++|++++| .++... ...+.++++|++|++++|. +++... ...
T Consensus 104 ~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~ 177 (272)
T 3rfs_A 104 VFDKLTNLKELVLVEN-QLQSLPD-GVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYNQ-LQSLPE-GVF 177 (272)
T ss_dssp TTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT-TTT
T ss_pred HhcCCcCCCEEECCCC-cCCccCH-HHhccCCCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCCC-cCccCH-HHh
Confidence 1246889999999998 5553221 22334899999999996 565321 2234678999999999974 443321 123
Q ss_pred Hhccccceeeccc
Q 025143 241 IFSLSVRISNLLD 253 (257)
Q Consensus 241 ~~~~~L~~L~l~~ 253 (257)
...++|+.|++.+
T Consensus 178 ~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 178 DKLTQLKDLRLYQ 190 (272)
T ss_dssp TTCTTCCEEECCS
T ss_pred cCCccCCEEECCC
Confidence 5668899988765
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.74 E-value=3.7e-10 Score=93.69 Aligned_cols=180 Identities=17% Similarity=0.134 Sum_probs=107.1
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
+.++.+++++.....- ..-.+..+++|+.|+++++ .++.... .....+++|++|+++++ .+...... ..
T Consensus 52 ~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNRITYI---SNSDLQRCVNLQALVLTSN-GINTIEE-----DSFSSLGSLEHLDLSYN-YLSNLSSS-WF 120 (353)
T ss_dssp TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTS-CCCEECT-----TTTTTCTTCCEEECCSS-CCSSCCHH-HH
T ss_pred ccCcEEECCCCcCccc---CHHHhccCCCCCEEECCCC-ccCccCH-----hhcCCCCCCCEEECCCC-cCCcCCHh-Hh
Confidence 3566777776532210 1112367788899998875 3432111 11345688999999877 45432222 23
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhc
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 216 (257)
..+++|++|+++++ .++.-........+++|++|++++|..++......+ ..+++|++|+++++ .++... ...+.+
T Consensus 121 ~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~-~~~l~~ 196 (353)
T 2z80_A 121 KPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDAS-DLQSYE-PKSLKS 196 (353)
T ss_dssp TTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET-TCCEEC-TTTTTT
T ss_pred CCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCC-CcCccC-HHHHhc
Confidence 46789999999876 444211101224678899999988743443221223 34788999999886 455322 222557
Q ss_pred CCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 217 CSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 217 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+++|++|+++++. ++... .......++|+.|++.+
T Consensus 197 l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 197 IQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRD 231 (353)
T ss_dssp CSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEES
T ss_pred cccCCeecCCCCc-cccch-hhhhhhcccccEEECCC
Confidence 7899999998865 44332 22345578888888765
No 60
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.74 E-value=2.1e-07 Score=70.11 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=89.0
Q ss_pred CCCCCccEEecCCCCCCChHHHHHHHhc---CCCCcEEEecCCcccCHHHHHHHHH---cCCCCCEEeccCCCCCCHHHH
Q 025143 111 GSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSL 184 (257)
Q Consensus 111 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~l 184 (257)
..-+.|++|+|++...+.+++...++.. -..|++|+|++| .+++.|...++. .-+.|++|+|+++ .+++++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 3458899999987547888887766554 478999999987 899998776664 4468999999997 8999999
Q ss_pred HHHHhhC---CCCCEEeccCCC--CCCHHHHHHHH---hcCCCCCeEecCC
Q 025143 185 QLIADNY---QELESLNLTRCV--KLTDGGLQKIL---IKCSSLRSLNLYA 227 (257)
Q Consensus 185 ~~l~~~~---~~L~~L~l~~~~--~l~~~~l~~l~---~~~~~L~~L~l~~ 227 (257)
.++.+.+ +.|++|+++++. .+++.+-.++. ..-+.|++|+++.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 9988854 579999998642 57877655544 3457899999965
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.73 E-value=3.4e-09 Score=92.38 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=77.4
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCCh-HHHHHHHhcCCCCcEEEecCCcccCHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~ 159 (257)
..+++|+.|+++++ .+++.... ..+.+++|++|+++++ .+.+ ..+......+++|++|+++++ .++...-.
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~-----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~ 392 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFE-----NCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKK 392 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTT-----TCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGG
T ss_pred hhCCcccEEEeECC-ccChhhhh-----hhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCccccc
Confidence 35567777777764 23331111 1244677777777776 4443 223333445677777777765 33321111
Q ss_pred HHHHcCCCCCEEeccCCCCCCHHHHHHHHhhC-CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHH
Q 025143 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY-QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYL 238 (257)
Q Consensus 160 ~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~-~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~ 238 (257)
.....+++|++|++++| .+++.. .... ++|+.|++++| .++ .+..-+.++++|++|++++|. ++.....
T Consensus 393 ~~~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~~L~~L~Ls~N-~l~--~ip~~~~~l~~L~~L~L~~N~-l~~l~~~- 462 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSN-ILTDTI----FRCLPPRIKVLDLHSN-KIK--SIPKQVVKLEALQELNVASNQ-LKSVPDG- 462 (520)
T ss_dssp CSCCCCTTCCEEECCSS-CCCGGG----GGSCCTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSC-CCCCCTT-
T ss_pred chhccCccCCEEECcCC-CCCcch----hhhhcccCCEEECCCC-ccc--ccchhhhcCCCCCEEECCCCc-CCccCHH-
Confidence 11124566777777666 444321 1112 46666666664 344 222222356666666666643 3322111
Q ss_pred HHHhccccceeeccc
Q 025143 239 CIIFSLSVRISNLLD 253 (257)
Q Consensus 239 ~~~~~~~L~~L~l~~ 253 (257)
.+...++|+.|++.+
T Consensus 463 ~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHT 477 (520)
T ss_dssp TTTTCTTCCEEECCS
T ss_pred HhccCCcccEEECcC
Confidence 233445566665543
No 62
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.73 E-value=3.1e-10 Score=100.77 Aligned_cols=110 Identities=19% Similarity=0.155 Sum_probs=54.0
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 217 (257)
.+++|++|+++++ .++...... ...+++|++|++++| .++..........+++|++|++++| .++... ...+.++
T Consensus 374 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l 448 (606)
T 3t6q_A 374 NLSHLQSLNLSYN-EPLSLKTEA-FKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISS-EQLFDGL 448 (606)
T ss_dssp TCTTCCEEECCSC-SCEEECTTT-TTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTC-CCBTTC-TTTTTTC
T ss_pred cCCCCCEEECCCC-cCCcCCHHH-hcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCC-ccCCcC-HHHHhCC
Confidence 3455555555544 222111111 124556666666665 3332111122234677777777775 343221 2224567
Q ss_pred CCCCeEecCCCCCCchHHH--HHHHHhccccceeeccc
Q 025143 218 SSLRSLNLYALSGYIMMSQ--YLCIIFSLSVRISNLLD 253 (257)
Q Consensus 218 ~~L~~L~l~~c~~~~~~~~--~~~~~~~~~L~~L~l~~ 253 (257)
++|++|++++|. +++..+ ...+...++|+.|++.+
T Consensus 449 ~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 449 PALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp TTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTT
T ss_pred CCCCEEECCCCC-CCccccccchhhccCCCccEEECCC
Confidence 778888887754 332111 11345567777777664
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.71 E-value=7.1e-10 Score=98.44 Aligned_cols=11 Identities=0% Similarity=0.006 Sum_probs=5.3
Q ss_pred CCceEeecccc
Q 025143 57 SLWLVIDLREM 67 (257)
Q Consensus 57 ~~~~~l~l~~~ 67 (257)
+.++.+++++.
T Consensus 325 ~~L~~L~l~~n 335 (606)
T 3t6q_A 325 PSLTHLSIKGN 335 (606)
T ss_dssp TTCSEEECCSC
T ss_pred CcCCEEECCCC
Confidence 34455555543
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.71 E-value=5.8e-10 Score=96.21 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=36.2
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhc
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFS 243 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 243 (257)
.+++|++|++++| .++......+ ..+++|+.|+++++ .++.... ..+..+++|++|++++|........ .....
T Consensus 150 ~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~ 223 (477)
T 2id5_A 150 GLNSLEQLTLEKC-NLTSIPTEAL-SHLHGLIVLRLRHL-NINAIRD-YSFKRLYRLKVLEISHWPYLDTMTP--NCLYG 223 (477)
T ss_dssp TCTTCCEEEEESC-CCSSCCHHHH-TTCTTCCEEEEESC-CCCEECT-TCSCSCTTCCEEEEECCTTCCEECT--TTTTT
T ss_pred CCCCCCEEECCCC-cCcccChhHh-cccCCCcEEeCCCC-cCcEeCh-hhcccCcccceeeCCCCccccccCc--ccccC
Confidence 3455555555554 3333221222 22555666665553 2322111 1133455666666666544332221 11122
Q ss_pred cccceeeccc
Q 025143 244 LSVRISNLLD 253 (257)
Q Consensus 244 ~~L~~L~l~~ 253 (257)
.+|+.|++.+
T Consensus 224 ~~L~~L~l~~ 233 (477)
T 2id5_A 224 LNLTSLSITH 233 (477)
T ss_dssp CCCSEEEEES
T ss_pred ccccEEECcC
Confidence 3566665543
No 65
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.71 E-value=1.4e-09 Score=93.83 Aligned_cols=131 Identities=18% Similarity=0.122 Sum_probs=69.3
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|++|+++++ .+....... ...+++|++|+++++ .++......+ ..+++|+.|+++++ .++......+ ..++
T Consensus 127 l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~l~~n-~i~~~~~~~~-~~l~ 200 (477)
T 2id5_A 127 LYNLKSLEVGDN-DLVYISHRA-FSGLNSLEQLTLEKC-NLTSIPTEAL-SHLHGLIVLRLRHL-NINAIRDYSF-KRLY 200 (477)
T ss_dssp CTTCCEEEECCT-TCCEECTTS-STTCTTCCEEEEESC-CCSSCCHHHH-TTCTTCCEEEEESC-CCCEECTTCS-CSCT
T ss_pred cccCCEEECCCC-ccceeChhh-ccCCCCCCEEECCCC-cCcccChhHh-cccCCCcEEeCCCC-cCcEeChhhc-ccCc
Confidence 455555555544 222211111 124567777777765 4443222223 36778888888886 4443211122 2477
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|++|++++|..+... ..-.....+|++|++++|. ++.... ..+...++|+.|++++
T Consensus 201 ~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 201 RLKVLEISHWPYLDTM--TPNCLYGLNLTSLSITHCN-LTAVPY-LAVRHLVYLRFLNLSY 257 (477)
T ss_dssp TCCEEEEECCTTCCEE--CTTTTTTCCCSEEEEESSC-CCSCCH-HHHTTCTTCCEEECCS
T ss_pred ccceeeCCCCcccccc--CcccccCccccEEECcCCc-ccccCH-HHhcCccccCeeECCC
Confidence 8888888876543321 1111223478888888854 443322 2345667788877764
No 66
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.71 E-value=2.4e-10 Score=101.50 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=41.4
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhc
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFS 243 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 243 (257)
.+++|++|++++| .+++..+......+++|++|++++| .++.... ..+.++++|++|++++|. +++.. ...+...
T Consensus 446 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l 520 (606)
T 3vq2_A 446 GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLD-SSHYNQL 520 (606)
T ss_dssp TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEE-GGGTTTC
T ss_pred CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcC-HHHccCC
Confidence 4455666666555 3333211222233666777777665 3443211 123456677777777753 33221 1123345
Q ss_pred cccceeeccc
Q 025143 244 LSVRISNLLD 253 (257)
Q Consensus 244 ~~L~~L~l~~ 253 (257)
++|+.|++.+
T Consensus 521 ~~L~~L~l~~ 530 (606)
T 3vq2_A 521 YSLSTLDCSF 530 (606)
T ss_dssp TTCCEEECTT
T ss_pred CcCCEEECCC
Confidence 6666666543
No 67
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.71 E-value=7.6e-10 Score=101.04 Aligned_cols=37 Identities=5% Similarity=-0.109 Sum_probs=16.7
Q ss_pred CCCceEeecccccchhhHHHHHhcCccCCCccEEeccCC
Q 025143 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (257)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 94 (257)
.+.++.++++.+...+.. .......+++|+.|+++++
T Consensus 125 l~~L~~L~Ls~n~l~~~~--~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPG--KVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp CTTCCEEECCSSEEECCS--SCCSCCCCTTCSEEECCSS
T ss_pred CCCCCEEECcCCccCCcC--CHHHhccCCCCCEEECCCC
Confidence 345666666655322110 0000134455666666553
No 68
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.71 E-value=1.5e-09 Score=99.05 Aligned_cols=159 Identities=19% Similarity=0.258 Sum_probs=87.9
Q ss_pred CCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHH-
Q 025143 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI- 134 (257)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~- 134 (257)
.+.++.++++.....+. +.....+..+++|+.|+++++. +..... ......+++|++|+++++ .+.+.....
T Consensus 99 l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 171 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNT-LDFPGK----VSGGLKLNSLEVLDLSAN-SISGANVVGW 171 (768)
T ss_dssp CTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSE-EECCSS----CCSCCCCTTCSEEECCSS-CCEEETHHHH
T ss_pred CCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCc-cCCcCC----HHHhccCCCCCEEECCCC-ccCCcCChhh
Confidence 35567777776543321 1111123677888888887752 211100 000134678888888877 554433222
Q ss_pred -HHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHH
Q 025143 135 -ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKI 213 (257)
Q Consensus 135 -l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 213 (257)
....+++|++|+++++ .++... .. ..+++|++|++++| .++.. +.. ...+++|++|++++| .+++.. ...
T Consensus 172 ~~~~~l~~L~~L~Ls~n-~l~~~~--~~-~~l~~L~~L~Ls~n-~l~~~-~~~-l~~l~~L~~L~Ls~n-~l~~~~-~~~ 242 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGN-KISGDV--DV-SRCVNLEFLDVSSN-NFSTG-IPF-LGDCSALQHLDISGN-KLSGDF-SRA 242 (768)
T ss_dssp HHTTCCTTCCEEECCSS-EEESCC--BC-TTCTTCCEEECCSS-CCCSC-CCB-CTTCCSCCEEECCSS-CCCSCH-HHH
T ss_pred hhhccCCCCCEEECCCC-cccccC--Cc-ccCCcCCEEECcCC-cCCCC-Ccc-cccCCCCCEEECcCC-cCCCcc-cHH
Confidence 2456778888888766 332211 11 35677888888776 33321 111 334777888888775 455432 233
Q ss_pred HhcCCCCCeEecCCCCC
Q 025143 214 LIKCSSLRSLNLYALSG 230 (257)
Q Consensus 214 ~~~~~~L~~L~l~~c~~ 230 (257)
+.++++|++|++++|..
T Consensus 243 l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQF 259 (768)
T ss_dssp TTTCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEECCCCcc
Confidence 56677777777777643
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.70 E-value=1.4e-09 Score=93.32 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=7.2
Q ss_pred CCccEEeccCC
Q 025143 84 RHVREINLEFA 94 (257)
Q Consensus 84 ~~L~~L~l~~~ 94 (257)
++++.|+++++
T Consensus 75 ~~l~~L~L~~n 85 (452)
T 3zyi_A 75 SNTRYLNLMEN 85 (452)
T ss_dssp TTCSEEECCSS
T ss_pred CCccEEECcCC
Confidence 46777777664
No 70
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.69 E-value=9.5e-07 Score=66.48 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=95.7
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh---cCCCCcEEEecCCcccCHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIG 157 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~ 157 (257)
...+.|++|++++...+.+.+...++... .....|++|+|+++ .+.+.+...++. .-+.|++|+|+++ .++++|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 56788999999975579999999988876 35678999999998 899888766654 3489999999977 899999
Q ss_pred HHHHHHcC---CCCCEEeccCCC--CCCHHHHHHHHh---hCCCCCEEeccCC
Q 025143 158 IQHLVKNC---KHIIDLNLSGCK--NLLDKSLQLIAD---NYQELESLNLTRC 202 (257)
Q Consensus 158 ~~~l~~~~---~~L~~L~l~~~~--~l~~~~l~~l~~---~~~~L~~L~l~~~ 202 (257)
...++..+ ..|++|+++++. .+.+.+..++.. .-+.|+.|+++.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 99988755 479999998753 477776555544 4689999999864
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.68 E-value=2.9e-08 Score=86.98 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=15.7
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025143 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYAL 228 (257)
Q Consensus 191 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 228 (257)
+++|++|++++| .++ .++. ...+++|++|+++++
T Consensus 450 l~~L~~L~Ls~N-~l~--~ip~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 450 LPRLQELYISRN-KLK--TLPD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp CTTCCEEECCSS-CCS--SCCC-GGGCTTCCEEECCSS
T ss_pred CChhcEEECCCC-ccC--cCCC-cccCccCCEEecCCC
Confidence 555555555553 333 1222 123455555555553
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.68 E-value=1.9e-10 Score=101.20 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=37.2
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhc
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFS 243 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 243 (257)
.+++|++|++++| .+++..+......+++|++|++++| .+++... ..+.++++|++|++++|. +++... ..+...
T Consensus 443 ~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l 517 (570)
T 2z63_A 443 GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMASNQ-LKSVPD-GIFDRL 517 (570)
T ss_dssp TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCCT-TTTTTC
T ss_pred cCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCCh-hhhhcccCCCEEeCCCCc-CCCCCH-HHhhcc
Confidence 4455555555555 2322111122223556666666654 3432211 123455666666666643 322211 112344
Q ss_pred cccceeeccc
Q 025143 244 LSVRISNLLD 253 (257)
Q Consensus 244 ~~L~~L~l~~ 253 (257)
++|+.|++.+
T Consensus 518 ~~L~~L~l~~ 527 (570)
T 2z63_A 518 TSLQKIWLHT 527 (570)
T ss_dssp TTCCEEECCS
T ss_pred cCCcEEEecC
Confidence 5555555543
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.68 E-value=2.9e-09 Score=84.08 Aligned_cols=138 Identities=13% Similarity=0.195 Sum_probs=79.0
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++ .++... ......+++|++|+++++ .+..... .....+++|++|+++++ .++.-.. .
T Consensus 56 ~~l~~L~~L~L~~n-~l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~ 125 (251)
T 3m19_A 56 RGLTKLTWLNLDYN-QLQTLS-----AGVFDDLTELGTLGLANN-QLASLPL-GVFDHLTQLDKLYLGGN-QLKSLPS-G 125 (251)
T ss_dssp TTCTTCCEEECTTS-CCCCCC-----TTTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-T
T ss_pred cCcccCCEEECCCC-cCCccC-----HhHhccCCcCCEEECCCC-cccccCh-hHhcccCCCCEEEcCCC-cCCCcCh-h
Confidence 56677888888774 333211 111244678888888776 4442211 11235678888888866 4442111 1
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCc
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYI 232 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~ 232 (257)
....+++|++|+++++ .++......+ ..+++|++|+++++ .++.... ..+..+++|++|++++++...
T Consensus 126 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 126 VFDRLTKLKELRLNTN-QLQSIPAGAF-DKLTNLQTLSLSTN-QLQSVPH-GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCCBCT
T ss_pred HhccCCcccEEECcCC-cCCccCHHHc-CcCcCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCceeC
Confidence 1235678888888886 5553221122 33788888888875 4542211 234567888888888865433
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.68 E-value=1.5e-09 Score=86.62 Aligned_cols=175 Identities=17% Similarity=0.152 Sum_probs=107.3
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
..++.++.+..... .+...-.++++.|+++++. ++.. .......+++|++|+++++ .+.... ..+.
T Consensus 16 ~~~~~l~~~~~~l~------~ip~~~~~~l~~L~l~~n~-l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~i~-~~~~ 81 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT------AIPSNIPADTKKLDLQSNK-LSSL-----PSKAFHRLTKLRLLYLNDN-KLQTLP-AGIF 81 (270)
T ss_dssp TTTTEEECTTSCCS------SCCSCCCTTCSEEECCSSC-CSCC-----CTTSSSSCTTCCEEECCSS-CCSCCC-TTTT
T ss_pred CCCCEEEccCCCCC------ccCCCCCCCCCEEECcCCC-CCee-----CHHHhcCCCCCCEEECCCC-ccCeeC-hhhh
Confidence 34667777654321 1111123579999999853 3321 1122356799999999987 444221 1122
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhc
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 216 (257)
..+++|++|+++++ .++..... ....+++|++|+++++ .++......+ ..+++|++|+++++ .++.... ..+..
T Consensus 82 ~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~-~~~~~ 155 (270)
T 2o6q_A 82 KELKNLETLWVTDN-KLQALPIG-VFDQLVNLAELRLDRN-QLKSLPPRVF-DSLTKLTYLSLGYN-ELQSLPK-GVFDK 155 (270)
T ss_dssp SSCTTCCEEECCSS-CCCCCCTT-TTTTCSSCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTT
T ss_pred cCCCCCCEEECCCC-cCCcCCHh-HcccccCCCEEECCCC-ccCeeCHHHh-CcCcCCCEEECCCC-cCCccCH-hHccC
Confidence 45799999999977 45432211 2246789999999997 5544222222 34899999999996 4553221 22567
Q ss_pred CCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 217 CSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 217 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+++|++|+++++. ++.... ..+...++|+.|++.+
T Consensus 156 l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 156 LTSLKELRLYNNQ-LKRVPE-GAFDKLTELKTLKLDN 190 (270)
T ss_dssp CTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCS
T ss_pred CcccceeEecCCc-CcEeCh-hHhccCCCcCEEECCC
Confidence 8999999999964 433221 1234567788887754
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.68 E-value=1.4e-09 Score=92.99 Aligned_cols=156 Identities=16% Similarity=0.121 Sum_probs=84.9
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++ .++. +.......+++|++|+++++ .+....- .....+++|++|+++++..++......
T Consensus 109 ~~l~~L~~L~L~~n-~l~~-----~~~~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~ 180 (440)
T 3zyj_A 109 NGLANLNTLELFDN-RLTT-----IPNGAFVYLSKLKELWLRNN-PIESIPS-YAFNRIPSLRRLDLGELKRLSYISEGA 180 (440)
T ss_dssp TTCSSCCEEECCSS-CCSS-----CCTTTSCSCSSCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred cCCccCCEEECCCC-cCCe-----eCHhHhhccccCceeeCCCC-cccccCH-HHhhhCcccCEeCCCCCCCcceeCcch
Confidence 45677777777764 2331 11112344577777777765 3332111 112346777777777654443321111
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHH
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCI 240 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~ 240 (257)
...+++|++|++++| .++. +..+ ..+++|++|+++++ .++.... ..+.++++|++|+++++. +++... ..+
T Consensus 181 -~~~l~~L~~L~L~~n-~l~~--~~~~-~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-~~~ 251 (440)
T 3zyj_A 181 -FEGLSNLRYLNLAMC-NLRE--IPNL-TPLIKLDELDLSGN-HLSAIRP-GSFQGLMHLQKLWMIQSQ-IQVIER-NAF 251 (440)
T ss_dssp -TTTCSSCCEEECTTS-CCSS--CCCC-TTCSSCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTCC-CCEECT-TSS
T ss_pred -hhcccccCeecCCCC-cCcc--cccc-CCCcccCEEECCCC-ccCccCh-hhhccCccCCEEECCCCc-eeEECh-hhh
Confidence 235677888888776 4443 2222 23677888888775 4553222 224567788888887743 433221 123
Q ss_pred Hhccccceeeccc
Q 025143 241 IFSLSVRISNLLD 253 (257)
Q Consensus 241 ~~~~~L~~L~l~~ 253 (257)
...++|+.|++.+
T Consensus 252 ~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 252 DNLQSLVEINLAH 264 (440)
T ss_dssp TTCTTCCEEECTT
T ss_pred cCCCCCCEEECCC
Confidence 4557777777654
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.67 E-value=1.8e-09 Score=88.21 Aligned_cols=167 Identities=16% Similarity=0.095 Sum_probs=97.8
Q ss_pred CCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHH
Q 025143 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (257)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l 135 (257)
.+.++.+++++....+.. .+..+++|+.|+++++. ++.. ...++|++|+++++ .+....
T Consensus 57 l~~L~~L~Ls~n~l~~~~-----~~~~l~~L~~L~Ls~n~-l~~l----------~~~~~L~~L~l~~n-~l~~~~---- 115 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETL-----DLESLSTLRTLDLNNNY-VQEL----------LVGPSIETLHAANN-NISRVS---- 115 (317)
T ss_dssp CTTCCEEECTTSCCEEEE-----EETTCTTCCEEECCSSE-EEEE----------EECTTCCEEECCSS-CCSEEE----
T ss_pred CCcCCEEECCCCcCCcch-----hhhhcCCCCEEECcCCc-cccc----------cCCCCcCEEECCCC-ccCCcC----
Confidence 345666666654322110 12455666666666542 2210 12366777777665 444322
Q ss_pred HhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHh
Q 025143 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI 215 (257)
Q Consensus 136 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 215 (257)
...+++|++|+++++ .++...-..+ ..+++|++|++++| .+++.....+...+++|++|++++| .++.. .. ..
T Consensus 116 ~~~~~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~-~~ 188 (317)
T 3o53_A 116 CSRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KG-QV 188 (317)
T ss_dssp ECCCSSCEEEECCSS-CCCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--EC-CC
T ss_pred ccccCCCCEEECCCC-CCCCccchhh-hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--cc-cc
Confidence 124677888888876 4543221112 35688999999987 6665444455555889999999886 45533 11 12
Q ss_pred cCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 216 KCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 216 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
.+++|++|+++++. +++... .+...++|+.|++.+
T Consensus 189 ~l~~L~~L~Ls~N~-l~~l~~--~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 189 VFAKLKTLDLSSNK-LAFMGP--EFQSAAGVTWISLRN 223 (317)
T ss_dssp CCTTCCEEECCSSC-CCEECG--GGGGGTTCSEEECTT
T ss_pred ccccCCEEECCCCc-CCcchh--hhcccCcccEEECcC
Confidence 47889999999854 443322 245678888888765
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.67 E-value=2.8e-09 Score=92.30 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=33.6
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 025143 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (257)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 218 (257)
+++|++|+++++ .++......+...+++|++|++++| .+++. .... .+++|+.|+++++ .+++. ..-+..++
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~~-~l~~L~~L~Ls~N-~l~~~--~~~~~~l~ 214 (487)
T 3oja_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQV-VFAKLKTLDLSSN-KLAFM--GPEFQSAA 214 (487)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCC-CCTTCCEEECCSS-CCCEE--CGGGGGGT
T ss_pred CCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC-ccccc--cccc-cCCCCCEEECCCC-CCCCC--CHhHcCCC
Confidence 344444444443 3332222222223445555555554 23321 1111 2455555555553 33321 11133445
Q ss_pred CCCeEecCCC
Q 025143 219 SLRSLNLYAL 228 (257)
Q Consensus 219 ~L~~L~l~~c 228 (257)
+|+.|+++++
T Consensus 215 ~L~~L~Ls~N 224 (487)
T 3oja_A 215 GVTWISLRNN 224 (487)
T ss_dssp TCSEEECTTS
T ss_pred CccEEEecCC
Confidence 5555555553
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.66 E-value=1.1e-09 Score=86.53 Aligned_cols=186 Identities=13% Similarity=0.085 Sum_probs=113.0
Q ss_pred hcHHHHHHHhcCCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCC
Q 025143 44 VSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG 123 (257)
Q Consensus 44 v~~~w~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~ 123 (257)
.|..|... .....++.++.++.... .+...-.++++.|+++++. ++.... .....+++|++|++++
T Consensus 3 ~Cp~~~gC--~C~~~~~~l~~~~~~l~------~~p~~~~~~l~~L~L~~n~-l~~~~~-----~~~~~l~~L~~L~L~~ 68 (251)
T 3m19_A 3 TCETVTGC--TCNEGKKEVDCQGKSLD------SVPSGIPADTEKLDLQSTG-LATLSD-----ATFRGLTKLTWLNLDY 68 (251)
T ss_dssp -CHHHHSS--EEEGGGTEEECTTCCCS------SCCSCCCTTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECTT
T ss_pred cCCCCCce--EcCCCCeEEecCCCCcc------ccCCCCCCCCCEEEccCCC-cCccCH-----hHhcCcccCCEEECCC
Confidence 35666332 22235667777654321 1111223589999999853 332111 1234579999999998
Q ss_pred CCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCC
Q 025143 124 CQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203 (257)
Q Consensus 124 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 203 (257)
+ .+..... .....+++|++|+++++ .++..... ....+++|++|+++++ .++.... .....+++|++|+++++
T Consensus 69 n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N- 141 (251)
T 3m19_A 69 N-QLQTLSA-GVFDDLTELGTLGLANN-QLASLPLG-VFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN- 141 (251)
T ss_dssp S-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-
T ss_pred C-cCCccCH-hHhccCCcCCEEECCCC-cccccChh-HhcccCCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-
Confidence 7 5544221 11245799999999977 55532211 2246789999999997 5653221 12234899999999996
Q ss_pred CCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 204 KLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 204 ~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
.++.... ..+.++++|++|+++++. ++.... ..+...++|+.|++.+
T Consensus 142 ~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 142 QLQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVPH-GAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCS
T ss_pred cCCccCH-HHcCcCcCCCEEECCCCc-CCccCH-HHHhCCCCCCEEEeeC
Confidence 5653221 135678999999999954 443321 1334667888888764
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.65 E-value=2.1e-09 Score=95.38 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=34.0
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhc
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFS 243 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 243 (257)
.+++|+.|++++| .+++.....+. .+++|+.|++++| .++. +......+|+|++|++++|. ++... ..+...
T Consensus 252 ~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i~--~~~~~l 323 (597)
T 3oja_B 252 NYPGLVEVDLSYN-ELEKIMYHPFV-KMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNH-LLHVE--RNQPQF 323 (597)
T ss_dssp GCTTCSEEECCSS-CCCEEESGGGT-TCSSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSSC-CCCCG--GGHHHH
T ss_pred cCCCCCEEECCCC-ccCCCCHHHhc-CccCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCCC-CCccC--cccccC
Confidence 3445555555554 33322112222 2455555555553 3332 11112335566666666643 22211 112334
Q ss_pred cccceeecc
Q 025143 244 LSVRISNLL 252 (257)
Q Consensus 244 ~~L~~L~l~ 252 (257)
++|+.|++.
T Consensus 324 ~~L~~L~L~ 332 (597)
T 3oja_B 324 DRLENLYLD 332 (597)
T ss_dssp TTCSEEECC
T ss_pred CCCCEEECC
Confidence 555555544
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.65 E-value=7.4e-10 Score=88.66 Aligned_cols=178 Identities=17% Similarity=0.134 Sum_probs=90.4
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
+.++.+++++.....- ....+..+++|+.|+++++ .++... ......+++|++|+++++ .+....... .
T Consensus 28 ~~l~~L~ls~n~l~~~---~~~~~~~l~~L~~L~l~~n-~l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL---GSYSFFSFPELQVLDLSRC-EIQTIE-----DGAYQSLSHLSTLILTGN-PIQSLALGA-F 96 (276)
T ss_dssp TTCCEEECTTCCCCEE---CTTTTTTCTTCSEEECTTC-CCCEEC-----TTTTTTCTTCCEEECTTC-CCCEECTTT-T
T ss_pred CCccEEECCCCccccc---CHhHhccccCCcEEECCCC-cCCccC-----HHHccCCcCCCEEECCCC-ccCccChhh-h
Confidence 4566777766533211 0112356677888888775 233211 111234677888888776 443322111 2
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHH---HHHHH
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDG---GLQKI 213 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~---~l~~l 213 (257)
..+++|++|+++++ .++...... ...+++|++|+++++ .++...+......+++|++|+++++ .++.. .+..
T Consensus 97 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~- 171 (276)
T 2z62_A 97 SGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRV- 171 (276)
T ss_dssp TTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHH-
T ss_pred cCCccccEEECCCC-CccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhh-
Confidence 34678888888765 333211111 235677888888876 4443222222334778888888775 44432 2222
Q ss_pred HhcCCCCC-eEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 214 LIKCSSLR-SLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 214 ~~~~~~L~-~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
...++.|. +|+++++. ++.... ......+|+.|++.+
T Consensus 172 l~~L~~l~l~L~ls~n~-l~~~~~--~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNP-MNFIQP--GAFKEIRLKELALDT 209 (276)
T ss_dssp HHTCTTCCEEEECCSSC-CCEECT--TSSCSCCEEEEECCS
T ss_pred hhhccccceeeecCCCc-ccccCc--cccCCCcccEEECCC
Confidence 22333333 77777743 332221 111223677777654
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.64 E-value=3.2e-10 Score=99.79 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=76.1
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|++|+++++ .+...... ...+++|++|+++++ .++..........+++|++|++++| .++..... ....++
T Consensus 372 ~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~ 445 (570)
T 2z63_A 372 TTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG-IFNGLS 445 (570)
T ss_dssp CSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTS-CCEECCTT-TTTTCT
T ss_pred cCccCEEECCCC-cccccccc--ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCC-cccccchh-hhhcCC
Confidence 466666666665 22221111 234677777777765 3322111112246778888888887 44332222 223488
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|++|++++| .+++..+...+..+++|++|++++|. +++... ..+...++|+.|++.+
T Consensus 446 ~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 446 SLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMAS 503 (570)
T ss_dssp TCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCS
T ss_pred cCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCCh-hhhhcccCCCEEeCCC
Confidence 8999999886 45433334445678899999998864 443311 1334667888888764
No 82
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.63 E-value=1.6e-10 Score=94.36 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=17.2
Q ss_pred CCceEeecccccchhh-HHHHHhcCccCCCccEEecc
Q 025143 57 SLWLVIDLREMNNAGN-RLVAALSIPRYRHVREINLE 92 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~ 92 (257)
..++.+++++....+. .+... +..+++|+.|+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~--l~~l~~L~~L~L~ 84 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS--LANLPYLNFLYIG 84 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG--GGGCTTCSEEEEE
T ss_pred ceEEEEECCCCCccCCcccChh--HhCCCCCCeeeCC
Confidence 4677777776543320 01111 2455666666665
No 83
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.63 E-value=2.4e-09 Score=89.99 Aligned_cols=37 Identities=8% Similarity=-0.125 Sum_probs=16.8
Q ss_pred CCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCC
Q 025143 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (257)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 94 (257)
..+.++.+++++.....- ..-.+..+++|+.|+++++
T Consensus 91 ~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRYL---PPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp TCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCEEECCCCCCCcC---CHHHhcCCCCCCEEECCCC
Confidence 345566666665432110 0011234555666666553
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.63 E-value=1.8e-09 Score=88.22 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=85.8
Q ss_pred CCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 025143 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (257)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (257)
+++|+.|+++++. ++... ......+++|++|+++++ .+.+.....+...+++|++|+++++ .++.. ...
T Consensus 119 ~~~L~~L~l~~N~-l~~~~-----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~- 187 (317)
T 3o53_A 119 GQGKKNIYLANNK-ITMLR-----DLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ- 187 (317)
T ss_dssp CSSCEEEECCSSC-CCSGG-----GBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-
T ss_pred cCCCCEEECCCCC-CCCcc-----chhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--ccc-
Confidence 4556666666532 32211 111123477888888776 5554433344445678888888766 44332 111
Q ss_pred HcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHh
Q 025143 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIF 242 (257)
Q Consensus 163 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~ 242 (257)
..+++|++|++++| .++... .. ...+++|++|+++++ .++. +...+..+++|+.|++++++ +...........
T Consensus 188 ~~l~~L~~L~Ls~N-~l~~l~-~~-~~~l~~L~~L~L~~N-~l~~--l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~ 260 (317)
T 3o53_A 188 VVFAKLKTLDLSSN-KLAFMG-PE-FQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSK 260 (317)
T ss_dssp CCCTTCCEEECCSS-CCCEEC-GG-GGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHT
T ss_pred cccccCCEEECCCC-cCCcch-hh-hcccCcccEEECcCC-cccc--hhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhc
Confidence 13678888888887 555311 11 334788888888885 5652 33334567888888888855 332233334455
Q ss_pred ccccceeecc
Q 025143 243 SLSVRISNLL 252 (257)
Q Consensus 243 ~~~L~~L~l~ 252 (257)
.++|+.+++.
T Consensus 261 ~~~L~~l~l~ 270 (317)
T 3o53_A 261 NQRVQTVAKQ 270 (317)
T ss_dssp CHHHHHHHHH
T ss_pred cccceEEECC
Confidence 5566655544
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.62 E-value=3.8e-08 Score=85.70 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=107.4
Q ss_pred CCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchH-HHHHHHHhccCCCCCccEEecCCCCCCChHHHH
Q 025143 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDR-HLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (257)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~ 133 (257)
..+.++.+++++....+. ... .+..+++|+.|+++++. ++.. .+... .+.+++|++|+++++ .+.+..-.
T Consensus 322 ~l~~L~~L~Ls~n~l~~~-~~~--~~~~l~~L~~L~L~~N~-l~~l~~~~~~----~~~l~~L~~L~Ls~N-~l~~~l~~ 392 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDT-VFE--NCGHLTELETLILQMNQ-LKELSKIAEM----TTQMKSLQQLDISQN-SVSYDEKK 392 (520)
T ss_dssp SCCCCCEEECCSSCCCTT-TTT--TCCCCSSCCEEECCSSC-CCBHHHHHHH----HTTCTTCCEEECCSS-CCBCCGGG
T ss_pred hCCcccEEEeECCccChh-hhh--hhccCCCCCEEEccCCc-cCccccchHH----HhhCCCCCEEECCCC-cCCccccc
Confidence 456678888887654321 111 23678999999999864 5431 11111 245799999999988 55441111
Q ss_pred HHHhcCCCCcEEEecCCcccCHHHHHHHHHcC-CCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHH
Q 025143 134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNC-KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQK 212 (257)
Q Consensus 134 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~ 212 (257)
.....+++|++|+++++ .++.... ... ++|+.|++++| .++. +..-...+++|++|++++| .++. +..
T Consensus 393 ~~~~~l~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~L~~N-~l~~--l~~ 461 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSN-KIKS--IPKQVVKLEALQELNVASN-QLKS--VPD 461 (520)
T ss_dssp CSCCCCTTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCC--CCT
T ss_pred chhccCccCCEEECcCC-CCCcchh----hhhcccCCEEECCCC-cccc--cchhhhcCCCCCEEECCCC-cCCc--cCH
Confidence 12245689999999987 6664332 233 69999999998 6662 3322225999999999996 5653 222
Q ss_pred -HHhcCCCCCeEecCCCCCCchHHH
Q 025143 213 -ILIKCSSLRSLNLYALSGYIMMSQ 236 (257)
Q Consensus 213 -l~~~~~~L~~L~l~~c~~~~~~~~ 236 (257)
.+..+++|++|++++++...+...
T Consensus 462 ~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHhccCCcccEEECcCCCCcccCCc
Confidence 356789999999999877666653
No 86
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.61 E-value=5e-10 Score=91.43 Aligned_cols=57 Identities=14% Similarity=0.019 Sum_probs=24.8
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeecc
Q 025143 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLL 252 (257)
Q Consensus 191 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~ 252 (257)
+++|+.|+++++ .++.. ... +..+++|++|+++++. +++. +...+...++|+.|++.
T Consensus 220 l~~L~~L~L~~N-~l~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 220 DKNTQKIHLAKN-SLAFD-LGK-VGLSKNLNGLDLRNNR-IYGT-LPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp TSCCSEEECCSS-EECCB-GGG-CCCCTTCCEEECCSSC-CEEC-CCGGGGGCTTCCEEECC
T ss_pred CCCCCEEECCCC-ceeee-cCc-ccccCCCCEEECcCCc-ccCc-CChHHhcCcCCCEEECc
Confidence 555666666553 23211 111 2345566666666543 2211 11122344555555554
No 87
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.61 E-value=4.1e-09 Score=80.10 Aligned_cols=126 Identities=18% Similarity=0.304 Sum_probs=65.2
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++ .++. +..+. .+++|+.|+++++ .+.. +......+++|++|+++++ .++. +..
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~~~~-----~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~ 110 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--ISSLS-----GMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIAS--LSG 110 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CCCHH-----HHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHH
T ss_pred hcCCCCCEEECCCC-CCcc--ccccc-----cCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCc--CCc
Confidence 45667777777664 2222 11111 1367777777665 3331 1112233467777777765 4443 223
Q ss_pred HHHcCCCCCEEeccCCCCCCHHH-HHHHHhhCCCCCEEeccCCCCCCHH---------HHHHHHhcCCCCCeEe
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRCVKLTDG---------GLQKILIKCSSLRSLN 224 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~-l~~l~~~~~~L~~L~l~~~~~l~~~---------~l~~l~~~~~~L~~L~ 224 (257)
+ ..+++|++|++++| .+++.. +..+. .+++|++|+++++ .+++. ....++..+|+|+.|+
T Consensus 111 ~-~~l~~L~~L~l~~N-~i~~~~~~~~l~-~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 I-EKLVNLRVLYMSNN-KITNWGEIDKLA-ALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp H-HHHHHSSEEEESEE-ECCCHHHHHHHT-TTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred c-ccCCCCCEEECCCC-cCCchhHHHHHh-cCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 3 24566777777776 455422 22333 3777777777765 23221 1122345667777766
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.60 E-value=6.5e-09 Score=85.29 Aligned_cols=37 Identities=5% Similarity=-0.114 Sum_probs=18.1
Q ss_pred CCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCC
Q 025143 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (257)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 94 (257)
..+.++.+++++.....- ..-.+..+++|+.|+++++
T Consensus 74 ~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 74 NLKNLHTLILINNKISKI---SPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TCTTCCEEECCSSCCCCB---CTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCcCCee---CHHHhcCCCCCCEEECCCC
Confidence 345567777766532210 0011245566666666653
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.58 E-value=6.1e-08 Score=84.88 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=5.9
Q ss_pred CCCCCEEeccCC
Q 025143 191 YQELESLNLTRC 202 (257)
Q Consensus 191 ~~~L~~L~l~~~ 202 (257)
+++|++|++++|
T Consensus 386 l~~L~~L~Ls~N 397 (549)
T 2z81_A 386 LKNLTSLDISRN 397 (549)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEECCCC
Confidence 455555555443
No 90
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.57 E-value=8.1e-08 Score=82.45 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=44.3
Q ss_pred CceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh
Q 025143 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (257)
Q Consensus 58 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 137 (257)
.++.+++++....+- . .+..+++|+.|+++++. ++... .+.+++|++|+++++ .+.+.. ..
T Consensus 43 ~L~~L~Ls~n~l~~~---~--~l~~l~~L~~L~Ls~n~-l~~~~--------~~~l~~L~~L~Ls~N-~l~~~~----~~ 103 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM---T--GIEKLTGLTKLICTSNN-ITTLD--------LSQNTNLTYLACDSN-KLTNLD----VT 103 (457)
T ss_dssp TCCEEECCSSCCCCC---T--TGGGCTTCSEEECCSSC-CSCCC--------CTTCTTCSEEECCSS-CCSCCC----CT
T ss_pred CCCEEEccCCCcccC---h--hhcccCCCCEEEccCCc-CCeEc--------cccCCCCCEEECcCC-CCceee----cC
Confidence 455666665432211 1 12455666666666542 33210 233456666666655 333321 23
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 176 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 176 (257)
.+++|++|+++++ .++... ...+++|++|++++|
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN 137 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS
T ss_pred CCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC
Confidence 4555666666554 333211 124455555555554
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.57 E-value=5.4e-09 Score=94.06 Aligned_cols=180 Identities=22% Similarity=0.220 Sum_probs=102.2
Q ss_pred CCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHH
Q 025143 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (257)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l 135 (257)
++..+.+++++....+- ..-.+..+++|+.|+++++ .++......+. .+++|++|+++++ .+....-. .
T Consensus 24 ~~~l~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-----~l~~L~~L~L~~n-~l~~l~~~-~ 92 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRL---PAANFTRYSQLTSLDVGFN-TISKLEPELCQ-----KLPMLKVLNLQHN-ELSQLSDK-T 92 (680)
T ss_dssp CTTCSEEECCSSCCCCC---CGGGGGGGTTCSEEECCSS-CCCCCCTTHHH-----HCTTCCEEECCSS-CCCCCCTT-T
T ss_pred CCCCcEEECCCCCCCCc---CHHHHhCCCcCcEEECCCC-ccCccCHHHHh-----cccCcCEEECCCC-ccCccChh-h
Confidence 35677788776543211 1111367788999998875 33322222222 2588999999876 44322111 1
Q ss_pred HhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHH-
Q 025143 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKIL- 214 (257)
Q Consensus 136 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~- 214 (257)
...+++|++|+++++ .++......+ ..+++|++|++++| .++......+ ..+++|++|+++++ .++......+.
T Consensus 93 ~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~ 167 (680)
T 1ziw_A 93 FAFCTNLTELHLMSN-SIQKIKNNPF-VKQKNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNN-KIQALKSEELDI 167 (680)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCSCTT-TTCTTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSS-CCCCBCHHHHGG
T ss_pred hccCCCCCEEECCCC-ccCccChhHc-cccCCCCEEECCCC-cccccCchhh-cccccCCEEEccCC-cccccCHHHhhc
Confidence 235788999999876 4432211122 36788999999887 4443222222 24888999999885 45433223221
Q ss_pred hcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 215 IKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 215 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
..+++|++|+++++. +++... .......+|+.|++.+
T Consensus 168 ~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 168 FANSSLKKLELSSNQ-IKEFSP-GCFHAIGRLFGLFLNN 204 (680)
T ss_dssp GTTCEESEEECTTCC-CCCBCT-TGGGGSSEECEEECTT
T ss_pred cccccccEEECCCCc-ccccCh-hhhhhhhhhhhhhccc
Confidence 256889999998864 332211 1234456677776554
No 92
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.56 E-value=1.4e-08 Score=75.67 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=6.1
Q ss_pred cCCCCCEEeccCC
Q 025143 164 NCKHIIDLNLSGC 176 (257)
Q Consensus 164 ~~~~L~~L~l~~~ 176 (257)
.+++|++|++++|
T Consensus 111 ~l~~L~~L~l~~N 123 (176)
T 1a9n_A 111 SLKSLTYLCILRN 123 (176)
T ss_dssp GCTTCCEEECCSS
T ss_pred cCCCCCEEEecCC
Confidence 3444444444443
No 93
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.56 E-value=4.5e-09 Score=93.27 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=65.2
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 217 (257)
.+++|++|+++++ .++......+ ..+++|++|++++| .++. +......+|+|+.|++++| .++. +..-+..+
T Consensus 252 ~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~l 323 (597)
T 3oja_B 252 NYPGLVEVDLSYN-ELEKIMYHPF-VKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHN-HLLH--VERNQPQF 323 (597)
T ss_dssp GCTTCSEEECCSS-CCCEEESGGG-TTCSSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSS-CCCC--CGGGHHHH
T ss_pred cCCCCCEEECCCC-ccCCCCHHHh-cCccCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCC-CCCc--cCcccccC
Confidence 4577777777765 4443322222 36789999999997 5554 2222234789999999886 4542 32224567
Q ss_pred CCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 218 SSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 218 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
++|++|++++|. ++... ....++|+.|++.+
T Consensus 324 ~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 324 DRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSH 354 (597)
T ss_dssp TTCSEEECCSSC-CCCCC----CCTTCCCSEEECCS
T ss_pred CCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeC
Confidence 889999998865 43332 34567788877754
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.56 E-value=2.9e-09 Score=85.92 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=7.2
Q ss_pred ccCCCccEEeccC
Q 025143 81 PRYRHVREINLEF 93 (257)
Q Consensus 81 ~~~~~L~~L~l~~ 93 (257)
..+++|+.|++++
T Consensus 52 ~~l~~L~~L~L~~ 64 (290)
T 1p9a_G 52 MPYTRLTQLNLDR 64 (290)
T ss_dssp TTCTTCCEEECTT
T ss_pred hcCCCCCEEECCC
Confidence 4455566666655
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.55 E-value=5e-09 Score=90.74 Aligned_cols=152 Identities=15% Similarity=0.072 Sum_probs=98.9
Q ss_pred cCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 025143 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (257)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (257)
.+++|+.|+++++. ++.... ...+.+++|+.|+++++ .+.+.....+...+++|++|+++++ .++.. ...
T Consensus 118 ~l~~L~~L~L~~N~-l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~ 187 (487)
T 3oja_A 118 RGQGKKNIYLANNK-ITMLRD-----LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ 187 (487)
T ss_dssp CCSSCEEEECCSSC-CCSGGG-----BCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC
T ss_pred ccCCCCEEECCCCC-CCCCCc-----hhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC-ccccc--ccc
Confidence 35677888887743 332211 11233689999999988 6665544445556899999999987 55532 111
Q ss_pred HHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHH
Q 025143 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCII 241 (257)
Q Consensus 162 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~ 241 (257)
..+++|++|++++| .+++.. .. ...+++|+.|+++++ .++. ++..+..+++|+.|++++++. ..........
T Consensus 188 -~~l~~L~~L~Ls~N-~l~~~~-~~-~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~l~~N~l-~c~~~~~~~~ 259 (487)
T 3oja_A 188 -VVFAKLKTLDLSSN-KLAFMG-PE-FQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGNGF-HCGTLRDFFS 259 (487)
T ss_dssp -CCCTTCCEEECCSS-CCCEEC-GG-GGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTCCB-CHHHHHHHHT
T ss_pred -ccCCCCCEEECCCC-CCCCCC-Hh-HcCCCCccEEEecCC-cCcc--cchhhccCCCCCEEEcCCCCC-cCcchHHHHH
Confidence 25789999999998 666421 12 335899999999996 5663 343356779999999999654 4223333444
Q ss_pred hccccceeec
Q 025143 242 FSLSVRISNL 251 (257)
Q Consensus 242 ~~~~L~~L~l 251 (257)
..++++.+++
T Consensus 260 ~l~~L~~l~~ 269 (487)
T 3oja_A 260 KNQRVQTVAK 269 (487)
T ss_dssp TCHHHHHHHH
T ss_pred hCCCCcEEec
Confidence 5555555544
No 96
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.54 E-value=1.1e-08 Score=91.96 Aligned_cols=181 Identities=13% Similarity=0.063 Sum_probs=106.5
Q ss_pred CCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHH
Q 025143 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (257)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l 135 (257)
.+.++.+++++....+- .... +..+++|+.|+++++. ++. +.....+.+++|++|+++++ .+...... .
T Consensus 48 l~~L~~L~Ls~n~l~~~-~~~~--~~~l~~L~~L~L~~n~-l~~-----l~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~ 116 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKL-EPEL--CQKLPMLKVLNLQHNE-LSQ-----LSDKTFAFCTNLTELHLMSN-SIQKIKNN-P 116 (680)
T ss_dssp GTTCSEEECCSSCCCCC-CTTH--HHHCTTCCEEECCSSC-CCC-----CCTTTTTTCTTCSEEECCSS-CCCCCCSC-T
T ss_pred CCcCcEEECCCCccCcc-CHHH--HhcccCcCEEECCCCc-cCc-----cChhhhccCCCCCEEECCCC-ccCccChh-H
Confidence 35678888886543211 0011 2567889999998753 331 11122345789999999887 44322111 1
Q ss_pred HhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHh-hCCCCCEEeccCCCCCCHHHHHHHH
Q 025143 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD-NYQELESLNLTRCVKLTDGGLQKIL 214 (257)
Q Consensus 136 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~-~~~~L~~L~l~~~~~l~~~~l~~l~ 214 (257)
...+++|++|+++++ .++......+ ..+++|++|++++| .++......+.. .+++|++|+++++ .++.... ..+
T Consensus 117 ~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~-~~~ 191 (680)
T 1ziw_A 117 FVKQKNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN-QIKEFSP-GCF 191 (680)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCT-TGG
T ss_pred ccccCCCCEEECCCC-cccccCchhh-cccccCCEEEccCC-cccccCHHHhhccccccccEEECCCC-cccccCh-hhh
Confidence 245789999999877 4443222222 36788999999987 454432233322 3688999999886 4543222 224
Q ss_pred hcCCCCCeEecCCCCCCchHHHHHH--HHhccccceeeccc
Q 025143 215 IKCSSLRSLNLYALSGYIMMSQYLC--IIFSLSVRISNLLD 253 (257)
Q Consensus 215 ~~~~~L~~L~l~~c~~~~~~~~~~~--~~~~~~L~~L~l~~ 253 (257)
..+++|+.|++.++. +........ ....++|+.|++.+
T Consensus 192 ~~l~~L~~L~l~~~~-l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 192 HAIGRLFGLFLNNVQ-LGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp GGSSEECEEECTTCC-CHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred hhhhhhhhhhccccc-cChhhHHHHHHHhhhccccEEEccC
Confidence 567889999998854 333222111 12346788887765
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.53 E-value=7.9e-10 Score=101.98 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=95.8
Q ss_pred CCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHH
Q 025143 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (257)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ 134 (257)
.++.++.++++......- ..-.+..+++|+.|+++++..... +......++++|++|+|+++ .+......
T Consensus 22 lp~~l~~LdLs~N~i~~i---~~~~~~~l~~L~~LdLs~n~~~~~-----i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~- 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV---TASSFPFLEQLQLLELGSQYTPLT-----IDKEAFRNLPNLRILDLGSS-KIYFLHPD- 91 (844)
T ss_dssp SCTTCCEEEEESCCCCEE---CSSSCSSCCSCSEEEECTTCCCCE-----ECTTTTSSCTTCCEEECTTC-CCCEECTT-
T ss_pred CCCCcCEEECCCCcCCcc---ChhHCcccccCeEEeCCCCCCccc-----cCHHHhcCCCCCCEEECCCC-cCcccCHh-
Confidence 345677888887543211 111236778899999988633221 11112355788999999887 44432111
Q ss_pred HHhcCCCCcEEEecCCcccCHHHHHH-HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCH---HHH
Q 025143 135 ISSTCPELKVFSIYWNVRVTDIGIQH-LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD---GGL 210 (257)
Q Consensus 135 l~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~---~~l 210 (257)
....+++|++|++++| .+++..... ....+++|++|++++| .++..........+++|++|+++++ .++. ..+
T Consensus 92 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l 168 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHEL 168 (844)
T ss_dssp SSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGG
T ss_pred HccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCCeeCHHHc
Confidence 1246788999999877 554322211 1236788999999987 4544222223345889999999885 3432 333
Q ss_pred HHHHhcCCCCCeEecCCCCC
Q 025143 211 QKILIKCSSLRSLNLYALSG 230 (257)
Q Consensus 211 ~~l~~~~~~L~~L~l~~c~~ 230 (257)
..+. . ++|+.|+++++..
T Consensus 169 ~~l~-~-~~L~~L~L~~n~l 186 (844)
T 3j0a_A 169 EPLQ-G-KTLSFFSLAANSL 186 (844)
T ss_dssp HHHH-H-CSSCCCEECCSBS
T ss_pred cccc-C-CccceEECCCCcc
Confidence 3322 1 7889999888653
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.53 E-value=3.8e-09 Score=85.27 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=74.5
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
+.++.++++..... .+...-.++++.|+++++. ++..... ....+++|++|+++++ .+......
T Consensus 10 ~~l~~l~~~~~~l~------~ip~~~~~~l~~L~L~~N~-l~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~~--- 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT------ALPPDLPKDTTILHLSENL-LYTFSLA-----TLMPYTRLTQLNLDRA-ELTKLQVD--- 73 (290)
T ss_dssp TTCCEEECTTSCCS------SCCSCCCTTCCEEECTTSC-CSEEEGG-----GGTTCTTCCEEECTTS-CCCEEECC---
T ss_pred CCccEEECCCCCCC------cCCCCCCCCCCEEEcCCCc-CCccCHH-----HhhcCCCCCEEECCCC-ccCcccCC---
Confidence 44666666653321 1111223689999998853 4322111 1244688888888776 44432111
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhc
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 216 (257)
..+++|++|+++++ .++. +......+++|++|+++++ .++......+ ..+++|++|+++++ .++.. ....+..
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~~-~~~~~~~ 146 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFN-RLTSLPLGAL-RGLGELQELYLKGN-ELKTL-PPGLLTP 146 (290)
T ss_dssp SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSS-CCCCCCSSTT-TTCTTCCEEECTTS-CCCCC-CTTTTTT
T ss_pred CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCC-cCcccCHHHH-cCCCCCCEEECCCC-CCCcc-Chhhccc
Confidence 35677777777765 3331 1111234566677776665 3432111112 23566666666664 33321 1112334
Q ss_pred CCCCCeEecCCC
Q 025143 217 CSSLRSLNLYAL 228 (257)
Q Consensus 217 ~~~L~~L~l~~c 228 (257)
+++|+.|+++++
T Consensus 147 l~~L~~L~L~~N 158 (290)
T 1p9a_G 147 TPKLEKLSLANN 158 (290)
T ss_dssp CTTCCEEECTTS
T ss_pred ccCCCEEECCCC
Confidence 556666666553
No 99
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.52 E-value=2.7e-08 Score=85.40 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=98.0
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++ .+++. .. ...+++|++|+++++ .+.+.. ...+++|++|+++++ .++...
T Consensus 39 ~~l~~L~~L~Ls~n-~l~~~--~~-----l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~--- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNS-SITDM--TG-----IEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNLD--- 101 (457)
T ss_dssp HHHTTCCEEECCSS-CCCCC--TT-----GGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCCC---
T ss_pred hHcCCCCEEEccCC-CcccC--hh-----hcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCceee---
Confidence 45689999999985 44432 11 234699999999988 566532 356899999999987 565432
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHH
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCI 240 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~ 240 (257)
...+++|++|++++| .++.. . ...+++|++|+++++ .++.. . +..+++|++|++++|..+.... .
T Consensus 102 -~~~l~~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N-~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~----~ 166 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARN-TLTEI--D--VSHNTQLTELDCHLNKKITKLD----V 166 (457)
T ss_dssp -CTTCTTCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTS-CCSCC--C--CTTCTTCCEEECTTCSCCCCCC----C
T ss_pred -cCCCCcCCEEECCCC-cCCee--c--CCCCCcCCEEECCCC-cccee--c--cccCCcCCEEECCCCCcccccc----c
Confidence 347899999999998 66652 2 345899999999986 56542 1 4567888888888875554432 3
Q ss_pred Hhccccceeeccc
Q 025143 241 IFSLSVRISNLLD 253 (257)
Q Consensus 241 ~~~~~L~~L~l~~ 253 (257)
...++|+.|++.+
T Consensus 167 ~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 167 TPQTQLTTLDCSF 179 (457)
T ss_dssp TTCTTCCEEECCS
T ss_pred ccCCcCCEEECCC
Confidence 3456666666543
No 100
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=1.4e-08 Score=77.21 Aligned_cols=128 Identities=19% Similarity=0.138 Sum_probs=88.7
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|++|+++++ .+.+. . ....+++|++|+++++ .++. +......+++|++|++++| .+++ +..+.. ++
T Consensus 47 l~~L~~L~ls~n-~l~~l--~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~~~~-l~ 115 (198)
T 1ds9_A 47 LKACKHLALSTN-NIEKI--S-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIAS--LSGIEK-LV 115 (198)
T ss_dssp TTTCSEEECSEE-EESCC--C-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHHHHH-HH
T ss_pred CCCCCEEECCCC-CCccc--c-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCc--CCcccc-CC
Confidence 589999999987 44442 1 2245799999999977 5542 3333345688999999998 6666 344444 88
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCch--------HHHHHHHHhccccceeecc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIM--------MSQYLCIIFSLSVRISNLL 252 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~--------~~~~~~~~~~~~L~~L~l~ 252 (257)
+|++|+++++ .+++......+..+++|++|+++++..... ......+...++|+.|+-.
T Consensus 116 ~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 116 NLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp HSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred CCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 9999999996 577543323467899999999999653222 1122346778889988744
No 101
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.51 E-value=1.1e-08 Score=85.83 Aligned_cols=131 Identities=21% Similarity=0.209 Sum_probs=59.8
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++. +++... .....+++|++|+++++ .+...... ....+++|++|+++++ .++.-. ..
T Consensus 66 ~~l~~L~~L~L~~n~-i~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~-~~ 135 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQ-IEEIDT-----YAFAYAHTIQKLYMGFN-AIRYLPPH-VFQNVPLLTVLVLERN-DLSSLP-RG 135 (390)
T ss_dssp HHCCCCSEEECTTSC-CCEECT-----TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC-TT
T ss_pred cccccCcEEECCCCc-ccccCh-----hhccCCCCcCEEECCCC-CCCcCCHH-HhcCCCCCCEEECCCC-ccCcCC-HH
Confidence 345566666666532 221111 11233466666666655 33321111 1134566666666655 333211 01
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYAL 228 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 228 (257)
+...+++|++|++++| .++......+ ..+++|++|+++++ .++... ...+++|+.|+++++
T Consensus 136 ~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 136 IFHNTPKLTTLSMSNN-NLERIEDDTF-QATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYN 196 (390)
T ss_dssp TTTTCTTCCEEECCSS-CCCBCCTTTT-SSCTTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSS
T ss_pred HhcCCCCCcEEECCCC-ccCccChhhc-cCCCCCCEEECCCC-cCCccc----cccccccceeecccc
Confidence 1134566666666665 3332111112 23566666666664 344321 234566666666653
No 102
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.51 E-value=7.5e-09 Score=91.99 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=46.1
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhC
Q 025143 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (257)
Q Consensus 112 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 191 (257)
.+++|++|+|+++ .+..-.-. ....+++|++|+|+++ .++.-.... ...+++|++|++++| .++.-....+ ..+
T Consensus 74 ~l~~L~~L~Ls~N-~i~~i~~~-~f~~L~~L~~L~Ls~N-~l~~l~~~~-f~~L~~L~~L~Ls~N-~l~~l~~~~~-~~L 147 (635)
T 4g8a_A 74 SFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALGA-FSGLSSLQKLVAVET-NLASLENFPI-GHL 147 (635)
T ss_dssp TCTTCCEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECGGG-GTTCTTCCEEECTTS-CCCCSTTCCC-TTC
T ss_pred CCCCCCEEECCCC-cCCCcChh-HhcCCCCCCEEEccCC-cCCCCCHHH-hcCCCCCCEEECCCC-cCCCCChhhh-hcC
Confidence 3455555555554 23211000 0123455555555554 232211111 124555555555554 3332110111 225
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025143 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYAL 228 (257)
Q Consensus 192 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 228 (257)
++|++|+++++ .++...+...+..+++|++|+++++
T Consensus 148 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 148 KTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cccCeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence 55555555553 3332222233444555555555553
No 103
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=3.3e-08 Score=90.98 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=53.4
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCH-H---HHHHHH---HcCCCCCEEeccCCCCCCHHHH
Q 025143 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-I---GIQHLV---KNCKHIIDLNLSGCKNLLDKSL 184 (257)
Q Consensus 112 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~---~~~~l~---~~~~~L~~L~l~~~~~l~~~~l 184 (257)
.+++|++|+|+++ .+.... ......+++|++|+++++..++. . .+..+. ..+++|++|++++| .++ .+
T Consensus 489 ~L~~L~~L~Ls~N-~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNC-PNMTQL-PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EF 563 (876)
T ss_dssp GCTTCCEEEEESC-TTCCSC-CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BC
T ss_pred cCCCCCEEECcCC-CCCccC-hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--cc
Confidence 4566777777665 222111 11123466777777766532444 1 122211 23346777777665 444 12
Q ss_pred HH--HHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025143 185 QL--IADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYAL 228 (257)
Q Consensus 185 ~~--l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 228 (257)
.. ....+++|+.|+++++ .++ .++ .+..+++|+.|+++++
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSS
T ss_pred CChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCC
Confidence 22 2233666666666664 344 222 2445566666666664
No 104
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=5e-09 Score=96.40 Aligned_cols=132 Identities=14% Similarity=0.237 Sum_probs=77.5
Q ss_pred cCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCCh-H---HHHHHH---hcCCCCcEEEecCCcccC
Q 025143 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-K---GIEIIS---STCPELKVFSIYWNVRVT 154 (257)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~-~---~l~~l~---~~~~~L~~L~l~~~~~~~ 154 (257)
.+++|+.|+++++.... ..... .+.+++|+.|+|+++..++. . .+..+. ..+++|++|+++++ .++
T Consensus 489 ~L~~L~~L~Ls~N~l~~-~iP~~-----l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~ 561 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMT-QLPDF-----LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE 561 (876)
T ss_dssp GCTTCCEEEEESCTTCC-SCCGG-----GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC
T ss_pred cCCCCCEEECcCCCCCc-cChHH-----HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC
Confidence 77888888888753221 11111 23468888888888732554 2 222222 24468888888876 444
Q ss_pred HHHHHH--HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCC-CCeEecCCCC
Q 025143 155 DIGIQH--LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS-LRSLNLYALS 229 (257)
Q Consensus 155 ~~~~~~--l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~-L~~L~l~~c~ 229 (257)
.+.. ....+++|++|++++| .++ .+..+ ..+++|+.|+++++ .++ .++.-+.++++ |++|+++++.
T Consensus 562 --~ip~~~~l~~L~~L~~L~Ls~N-~l~--~lp~~-~~L~~L~~L~Ls~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 562 --EFPASASLQKMVKLGLLDCVHN-KVR--HLEAF-GTNVKLTDLKLDYN-QIE--EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp --BCCCHHHHTTCTTCCEEECTTS-CCC--BCCCC-CTTSEESEEECCSS-CCS--CCCTTSCEECTTCCEEECCSSC
T ss_pred --ccCChhhhhcCCCCCEEECCCC-Ccc--cchhh-cCCCcceEEECcCC-ccc--cchHHHhhccccCCEEECcCCC
Confidence 2222 2346778888888886 455 23322 33677888888775 344 23333445666 7777777754
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.49 E-value=1.5e-08 Score=89.21 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=28.8
Q ss_pred cCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChH-HHHHHHhcCCCCcEEEecCC
Q 025143 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWN 150 (257)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~ 150 (257)
.+++|+.|+++++ .+++... ...+.+++|+.|+++++ .+... .+......+++|++|+++++
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVF-----QGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTT-----TTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred CCCCceEEECCCC-ccccchh-----hhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC
Confidence 4456666666653 2332111 11234566666666655 33321 12222234566666666654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.48 E-value=7.5e-08 Score=76.50 Aligned_cols=144 Identities=20% Similarity=0.173 Sum_probs=102.7
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+++++ .+++.. . ...+++|++|+++++ .+.+... ...+++|++|+++++ .++. +..
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l~--~-----l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~ 102 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSLA--G-----MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNG 102 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCCT--T-----GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTT
T ss_pred hhcCcCcEEECcCC-Ccccch--H-----HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCC--cCc
Confidence 46789999999986 344321 1 234699999999988 5554322 457899999999987 5544 222
Q ss_pred HHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHH
Q 025143 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCI 240 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~ 240 (257)
+. . ++|++|++++| .+++ +..+ ..+++|++|+++++ .+++. . .+..+++|++|+++++. +++. ..+
T Consensus 103 ~~-~-~~L~~L~L~~N-~l~~--~~~l-~~l~~L~~L~Ls~N-~i~~~--~-~l~~l~~L~~L~L~~N~-i~~~---~~l 168 (263)
T 1xeu_A 103 IP-S-ACLSRLFLDNN-ELRD--TDSL-IHLKNLEILSIRNN-KLKSI--V-MLGFLSKLEVLDLHGNE-ITNT---GGL 168 (263)
T ss_dssp CC-C-SSCCEEECCSS-CCSB--SGGG-TTCTTCCEEECTTS-CCCBC--G-GGGGCTTCCEEECTTSC-CCBC---TTS
T ss_pred cc-c-CcccEEEccCC-ccCC--Chhh-cCcccccEEECCCC-cCCCC--h-HHccCCCCCEEECCCCc-Ccch---HHh
Confidence 22 2 79999999998 6666 2333 35999999999996 57653 2 36788999999999964 5544 234
Q ss_pred Hhccccceeeccc
Q 025143 241 IFSLSVRISNLLD 253 (257)
Q Consensus 241 ~~~~~L~~L~l~~ 253 (257)
...++|+.|++.+
T Consensus 169 ~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 169 TRLKKVNWIDLTG 181 (263)
T ss_dssp TTCCCCCEEEEEE
T ss_pred ccCCCCCEEeCCC
Confidence 5677888888765
No 107
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.48 E-value=5.6e-09 Score=83.47 Aligned_cols=133 Identities=16% Similarity=0.201 Sum_probs=89.5
Q ss_pred CCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHH
Q 025143 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (257)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 163 (257)
++|+.|+++++ .++..... ....+++|++|+++++ .+...... ....+++|++|+++++ .++......+ .
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~-----~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~-~ 97 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSY-----SFFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALGAF-S 97 (276)
T ss_dssp TTCCEEECTTC-CCCEECTT-----TTTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTTT-T
T ss_pred CCccEEECCCC-cccccCHh-----HhccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccChhhh-c
Confidence 47999999985 34432211 1345799999999987 55432211 1245799999999987 5543322222 4
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCC
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS 229 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~ 229 (257)
.+++|++|++++| .++......+ ..+++|++|+++++ .++...+...+.++++|++|+++++.
T Consensus 98 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 98 GLSSLQKLVAVET-NLASLENFPI-GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TCTTCCEEECTTS-CCCCSTTCCC-TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCccccEEECCCC-CccccCchhc-ccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC
Confidence 6889999999997 4444211123 34899999999996 56543344456788999999999964
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.46 E-value=1.7e-08 Score=77.25 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=83.8
Q ss_pred CCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 025143 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (257)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (257)
.++|+.|+++++ .++.. .......+++|++|+++++ .+..... .....+++|++|+++++ .++.... ...
T Consensus 27 ~~~l~~L~l~~n-~l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~ 96 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSL-----PNGVFDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTN-QLQSLPN-GVF 96 (208)
T ss_dssp CTTCSEEECCSS-CCCCC-----CTTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTT
T ss_pred CCCCcEEEcCCC-ccCcC-----ChhhhcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCC-cCCccCH-hHh
Confidence 457899999875 33321 1112345689999999876 4443211 12245789999999876 4542211 112
Q ss_pred HcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCC
Q 025143 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGY 231 (257)
Q Consensus 163 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~ 231 (257)
..+++|++|+++++ .++..... ....+++|++|+++++ .++... ...+..+++|++|++++++..
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPDG-VFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred cCccCCCEEEcCCC-cCcccCHh-HhccCCcCCEEECCCC-ccceeC-HHHhccCCCccEEEecCCCee
Confidence 46788999999987 55532111 2234889999999885 455321 123466889999999886544
No 109
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.44 E-value=6.2e-09 Score=96.03 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=82.9
Q ss_pred CCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHH-
Q 025143 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE- 133 (257)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~- 133 (257)
..+.++.++++.+..... +..-.+..+++|+.|+++++. +... .....+.+++|++|+|+++ .+.+....
T Consensus 46 ~l~~L~~LdLs~n~~~~~--i~~~~f~~L~~L~~L~Ls~N~-l~~~-----~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 116 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLT--IDKEAFRNLPNLRILDLGSSK-IYFL-----HPDAFQGLFHLFELRLYFC-GLSDAVLKD 116 (844)
T ss_dssp SCCSCSEEEECTTCCCCE--ECTTTTSSCTTCCEEECTTCC-CCEE-----CTTSSCSCSSCCCEECTTC-CCSSCCSTT
T ss_pred ccccCeEEeCCCCCCccc--cCHHHhcCCCCCCEEECCCCc-Cccc-----CHhHccCCcccCEeeCcCC-CCCcccccC
Confidence 345667777776532211 001113667778888887643 3321 1112345678888888776 44432111
Q ss_pred HHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCH---HHHHHHHhhCCCCCEEeccCCCCCCHHHH
Q 025143 134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD---KSLQLIADNYQELESLNLTRCVKLTDGGL 210 (257)
Q Consensus 134 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~---~~l~~l~~~~~~L~~L~l~~~~~l~~~~l 210 (257)
.....+++|++|+++++ .++..........+++|++|+++++ .++. ..+..+.. ++|+.|+++++ .++....
T Consensus 117 ~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~--~~L~~L~L~~n-~l~~~~~ 191 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQG--KTLSFFSLAAN-SLYSRVS 191 (844)
T ss_dssp CCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHH--CSSCCCEECCS-BSCCCCC
T ss_pred ccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccC--CccceEECCCC-ccccccc
Confidence 11235678888888766 4433222122246778888888776 3332 22222221 67888888775 3332111
Q ss_pred HHHHhcCC------CCCeEecCCCC
Q 025143 211 QKILIKCS------SLRSLNLYALS 229 (257)
Q Consensus 211 ~~l~~~~~------~L~~L~l~~c~ 229 (257)
.. ...|+ .|++|+++++.
T Consensus 192 ~~-~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 192 VD-WGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CC-CCSSSCTTTTCCBSEEBCSSCC
T ss_pred cc-hhhcCCccccCceeEEecCCCc
Confidence 11 12223 37888887753
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.43 E-value=2.4e-08 Score=77.19 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=86.1
Q ss_pred CCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHH
Q 025143 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (257)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 163 (257)
++++.|++++. .++.. ....+..+++|++|+|+++ .+....... ...+++|++|+++++ .++.-. ..+..
T Consensus 32 ~~l~~L~l~~n-~i~~i-----~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~-~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVI-----PPGAFSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGN-KITELP-KSLFE 101 (220)
T ss_dssp TTCCEEECCSS-CCCEE-----CTTSSTTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSS-CCCCCC-TTTTT
T ss_pred cCCCEEECCCC-cCCCc-----CHhHhhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCC-cCCccC-HhHcc
Confidence 57889998874 34321 1112345689999999887 444321111 245789999999876 454211 11124
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHH
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMS 235 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~ 235 (257)
.+++|++|+++++ .++......+. .+++|++|+++++ .++.... ..+..+++|++|++++.+..-+..
T Consensus 102 ~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 102 GLFSLQLLLLNAN-KINCLRVDAFQ-DLHNLNLLSLYDN-KLQTIAK-GTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEEECCCC-CCCEeCHHHcC-CCCCCCEEECCCC-cCCEECH-HHHhCCCCCCEEEeCCCCcCCCCc
Confidence 6788999999987 55543223333 4889999999885 4543221 224567889999998876555554
No 111
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.43 E-value=3.5e-08 Score=80.93 Aligned_cols=33 Identities=9% Similarity=-0.039 Sum_probs=16.0
Q ss_pred CCCceEeecccccchhhHHHHHhcCccCCCccEEeccCC
Q 025143 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (257)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 94 (257)
.+.++.+++++.... .+...-.++|+.|+++++
T Consensus 99 l~~L~~L~Ls~n~l~------~l~~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 99 LVKLERLYLSKNQLK------ELPEKMPKTLQELRVHEN 131 (330)
T ss_dssp CTTCCEEECCSSCCS------BCCSSCCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcCC------ccChhhcccccEEECCCC
Confidence 345677777654321 011112256666666653
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.41 E-value=1.6e-08 Score=78.17 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=98.0
Q ss_pred ceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhc
Q 025143 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 138 (257)
Q Consensus 59 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 138 (257)
|+.+++++..... +...-.+.++.|++++. .++..... .....+++|++|+++++ .+....-. ....
T Consensus 13 ~~~l~~s~n~l~~------iP~~~~~~~~~L~L~~N-~l~~~~~~----~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~ 79 (220)
T 2v70_A 13 GTTVDCSNQKLNK------IPEHIPQYTAELRLNNN-EFTVLEAT----GIFKKLPQLRKINFSNN-KITDIEEG-AFEG 79 (220)
T ss_dssp TTEEECCSSCCSS------CCSCCCTTCSEEECCSS-CCCEECCC----CCGGGCTTCCEEECCSS-CCCEECTT-TTTT
T ss_pred CCEeEeCCCCccc------CccCCCCCCCEEEcCCC-cCCccCch----hhhccCCCCCEEECCCC-cCCEECHH-HhCC
Confidence 5667776643211 11122346789999985 34322100 11234699999999987 45432211 1245
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 025143 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (257)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 218 (257)
+++|++|+++++ .++...... ...+++|++|+++++ .++......+. .+++|++|+++++ .++... ...+..++
T Consensus 80 l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~-~~~~~~l~ 153 (220)
T 2v70_A 80 ASGVNEILLTSN-RLENVQHKM-FKGLESLKTLMLRSN-RITCVGNDSFI-GLSSVRLLSLYDN-QITTVA-PGAFDTLH 153 (220)
T ss_dssp CTTCCEEECCSS-CCCCCCGGG-GTTCSSCCEEECTTS-CCCCBCTTSST-TCTTCSEEECTTS-CCCCBC-TTTTTTCT
T ss_pred CCCCCEEECCCC-ccCccCHhH-hcCCcCCCEEECCCC-cCCeECHhHcC-CCccCCEEECCCC-cCCEEC-HHHhcCCC
Confidence 799999999977 554322222 247889999999997 55542222333 4899999999995 565321 23356789
Q ss_pred CCCeEecCCCCCCchHH
Q 025143 219 SLRSLNLYALSGYIMMS 235 (257)
Q Consensus 219 ~L~~L~l~~c~~~~~~~ 235 (257)
+|++|++++.+...+..
T Consensus 154 ~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 154 SLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TCCEEECCSCCEECSGG
T ss_pred CCCEEEecCcCCcCCCc
Confidence 99999999976655554
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.40 E-value=1.9e-08 Score=78.23 Aligned_cols=136 Identities=18% Similarity=0.145 Sum_probs=90.3
Q ss_pred CCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 025143 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (257)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (257)
.++|+.|+++++. ++... ......+++|++|+|+++ .+..... .....+++|+.|+++++ .++...- ...
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~-----~~~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~ 108 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLE-----PGVFDSLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGTN-QLTVLPS-AVF 108 (229)
T ss_dssp CTTCSEEECCSSC-CCCCC-----TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTT
T ss_pred CCCCCEEEcCCCc-cCccC-----HHHhhCccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCCC-cCCccCh-hHh
Confidence 3789999999853 43211 112345799999999987 4433211 12246799999999987 5553211 112
Q ss_pred HcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCch
Q 025143 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIM 233 (257)
Q Consensus 163 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~ 233 (257)
..+++|++|+++++ .++. +..-...+++|++|+++++ .++.... ..+..+++|+.|++++.+...+
T Consensus 109 ~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-KLTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTCTTCCEEECCSS-CCCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSCBCTT
T ss_pred CcchhhCeEeccCC-cccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCCccCC
Confidence 46889999999997 5653 2222345899999999995 5653221 3356789999999999665443
No 114
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.40 E-value=2.5e-08 Score=89.15 Aligned_cols=139 Identities=18% Similarity=0.159 Sum_probs=75.2
Q ss_pred ccCCCccEEeccCCCCCchH------------HHHHHHHhccC--CCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEE
Q 025143 81 PRYRHVREINLEFAQDIEDR------------HLELLKTKCLG--SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFS 146 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~------------~l~~l~~~~~~--~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~ 146 (257)
..+++|+.|+++++. ++.. ..........+ .+++|++|+++++ .+.... ......+++|++|+
T Consensus 203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~-p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKL-PTFLKALPEMQLIN 279 (636)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSC-CTTTTTCSSCCEEE
T ss_pred hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccC-hHHHhcCCCCCEEE
Confidence 567788888888753 4431 11111111223 5678888888776 322211 11123567888888
Q ss_pred ecCCcccCH-HHHHHHH-----HcCCCCCEEeccCCCCCCHHHHHH--HHhhCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 025143 147 IYWNVRVTD-IGIQHLV-----KNCKHIIDLNLSGCKNLLDKSLQL--IADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (257)
Q Consensus 147 l~~~~~~~~-~~~~~l~-----~~~~~L~~L~l~~~~~l~~~~l~~--l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 218 (257)
++++..++. .....+. ..+++|++|++++| .++ .+.. ....+++|++|+++++ .+++. ++ .+..++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N-~l~g~-ip-~~~~l~ 353 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYN-QLEGK-LP-AFGSEI 353 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSC-CCEEE-CC-CCEEEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCC-cCccc-hh-hhCCCC
Confidence 887733665 2222222 12477888888887 555 2322 2334777888888775 34311 11 234455
Q ss_pred CCCeEecCCC
Q 025143 219 SLRSLNLYAL 228 (257)
Q Consensus 219 ~L~~L~l~~c 228 (257)
+|++|+++++
T Consensus 354 ~L~~L~L~~N 363 (636)
T 4eco_A 354 KLASLNLAYN 363 (636)
T ss_dssp EESEEECCSS
T ss_pred CCCEEECCCC
Confidence 6666666554
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.39 E-value=1.2e-07 Score=83.51 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=86.9
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 193 (257)
..|+.|+++++ .++. +.. ...+++|+.|+++++ .++ .+......+++|++|++++| .++. +..+ ..+++
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l-~~l~~ 509 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALEN--VDGV-ANLPR 509 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCC--CGGG-TTCSS
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCC--Cccc-CCCCC
Confidence 46899999987 5544 222 356789999999987 555 22222357899999999997 6665 3434 34999
Q ss_pred CCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchH--HHHHHHHhccccceeec
Q 025143 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMM--SQYLCIIFSLSVRISNL 251 (257)
Q Consensus 194 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~--~~~~~~~~~~~L~~L~l 251 (257)
|+.|+++++ .++....+..+.++++|+.|+++++. +++. .........++|+.|++
T Consensus 510 L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 510 LQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 999999995 56643213446789999999999954 4433 13335566788988864
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.39 E-value=2.9e-08 Score=75.87 Aligned_cols=131 Identities=17% Similarity=0.118 Sum_probs=85.8
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
.++|++|+++++ .+....- .....+++|++|+++++ .++.... .....+++|++|++++| .++... ......++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~ 100 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPN-GVFDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTN-QLQSLP-NGVFDKLT 100 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred CCCCcEEEcCCC-ccCcCCh-hhhcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCC-cCCccC-HhHhcCcc
Confidence 468999999987 4543221 12346799999999976 5553211 12246789999999997 555321 12234589
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|++|+++++ .++... ...+.++++|++|+++++. +++... ..+...++|+.|++.+
T Consensus 101 ~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 101 QLKELALNTN-QLQSLP-DGVFDKLTQLKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHD 157 (208)
T ss_dssp TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCS
T ss_pred CCCEEEcCCC-cCcccC-HhHhccCCcCCEEECCCCc-cceeCH-HHhccCCCccEEEecC
Confidence 9999999986 565321 2235678999999999964 443221 1235678888888765
No 117
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.38 E-value=1.8e-08 Score=89.47 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=85.5
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 193 (257)
+++++|+|++. .++.-.-. ....+++|++|++++| .++.-.-.. ...+++|++|++++| .++.-... .+..+++
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~-~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N-~l~~l~~~-~f~~L~~ 125 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGN-PIQSLALG-AFSGLSS 125 (635)
T ss_dssp TTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTC-CCCEECGG-GGTTCTT
T ss_pred cCCCEEEeeCC-CCCCCCHH-HHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCC-cCCCCCHH-HhcCCCC
Confidence 47899999886 45432111 1246899999999987 554321111 247899999999998 56542222 2345999
Q ss_pred CCEEeccCCCCCCHHHHHH-HHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 194 LESLNLTRCVKLTDGGLQK-ILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 194 L~~L~l~~~~~l~~~~l~~-l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
|++|+++++ .++. +.. .+.++++|++|+++++. ++...........++|+.|++..
T Consensus 126 L~~L~Ls~N-~l~~--l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 126 LQKLVAVET-NLAS--LENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CCEEECTTS-CCCC--STTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCC-cCCC--CChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccC
Confidence 999999996 4553 221 25678999999999954 43322222445678888888764
No 118
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.37 E-value=1.2e-07 Score=83.34 Aligned_cols=163 Identities=12% Similarity=0.173 Sum_probs=107.0
Q ss_pred cCCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHH
Q 025143 54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (257)
Q Consensus 54 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~ 133 (257)
...+.++.+++++....+. .. .....+++|+.|+++++ .++... .+.. ....+++|+.|+++++ .+....-.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~-~~--~~~~~l~~L~~L~L~~N-~l~~~~--~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~ 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS-VF--QGCSTLKRLQTLILQRN-GLKNFF--KVAL-MTKNMSSLETLDVSLN-SLNSHAYD 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT-TT--TTCCSCSSCCEEECCSS-CCCBTT--HHHH-TTTTCTTCCEEECTTS-CCBSCCSS
T ss_pred cCCCCceEEECCCCccccc-hh--hhhcccCCCCEEECCCC-CcCCcc--cchh-hhcCCCCCCEEECCCC-cCCCccCh
Confidence 3456778888887644321 11 12367899999999985 444311 1111 1345799999999987 44431111
Q ss_pred HHHhcCCCCcEEEecCCcccCHHHHHHHHHcC-CCCCEEeccCCCCCCHHHHHH-HHhhCCCCCEEeccCCCCCCHHHHH
Q 025143 134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNC-KHIIDLNLSGCKNLLDKSLQL-IADNYQELESLNLTRCVKLTDGGLQ 211 (257)
Q Consensus 134 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~l~~-l~~~~~~L~~L~l~~~~~l~~~~l~ 211 (257)
.....+++|++|+++++ .++.... ... ++|+.|++++| .++. +.. +. .+++|++|+++++ .++. +.
T Consensus 422 ~~~~~l~~L~~L~l~~n-~l~~~~~----~~l~~~L~~L~L~~N-~l~~--ip~~~~-~l~~L~~L~L~~N-~l~~--l~ 489 (562)
T 3a79_B 422 RTCAWAESILVLNLSSN-MLTGSVF----RCLPPKVKVLDLHNN-RIMS--IPKDVT-HLQALQELNVASN-QLKS--VP 489 (562)
T ss_dssp CCCCCCTTCCEEECCSS-CCCGGGG----SSCCTTCSEEECCSS-CCCC--CCTTTT-SSCCCSEEECCSS-CCCC--CC
T ss_pred hhhcCcccCCEEECCCC-CCCcchh----hhhcCcCCEEECCCC-cCcc--cChhhc-CCCCCCEEECCCC-CCCC--CC
Confidence 12335689999999987 6664332 233 68999999998 6662 222 33 5899999999996 5652 22
Q ss_pred H-HHhcCCCCCeEecCCCCCCchHHH
Q 025143 212 K-ILIKCSSLRSLNLYALSGYIMMSQ 236 (257)
Q Consensus 212 ~-l~~~~~~L~~L~l~~c~~~~~~~~ 236 (257)
. .+..+++|++|++++++...+...
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred HHHHhcCCCCCEEEecCCCcCCCcch
Confidence 2 256789999999999887666654
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.35 E-value=3.5e-08 Score=76.72 Aligned_cols=131 Identities=16% Similarity=0.131 Sum_probs=77.6
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
+.++.+++++....+- ..-.+..+++|+.|+++++. ++. +....+..+++|+.|+|+++ .+....- ...
T Consensus 40 ~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~N~-l~~-----i~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL---EPGVFDSLINLKELYLGSNQ-LGA-----LPVGVFDSLTQLTVLDLGTN-QLTVLPS-AVF 108 (229)
T ss_dssp TTCSEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSC-CCC-----CCTTTTTTCTTCCEEECCSS-CCCCCCT-TTT
T ss_pred CCCCEEEcCCCccCcc---CHHHhhCccCCcEEECCCCC-CCC-----cChhhcccCCCcCEEECCCC-cCCccCh-hHh
Confidence 4567777776543211 01113567888999988753 321 11112345688999999887 4443211 112
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCC
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 203 (257)
..+++|++|+++++ .++. +..-...+++|++|+++++ .++.-.. .....+++|+.|++++++
T Consensus 109 ~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-KLTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECCSS-CCCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred CcchhhCeEeccCC-cccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 35788999999876 4542 2111247788999999887 5553211 223347889999998854
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.35 E-value=1.9e-08 Score=77.72 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=74.5
Q ss_pred CceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh
Q 025143 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (257)
Q Consensus 58 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 137 (257)
..+.+++++.....-. ..-.+..+++|+.|+++++ .++... ...+..+++|++|+|+++ .+...... ...
T Consensus 33 ~~~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L~~N-~i~~i~-----~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~ 102 (220)
T 2v70_A 33 YTAELRLNNNEFTVLE--ATGIFKKLPQLRKINFSNN-KITDIE-----EGAFEGASGVNEILLTSN-RLENVQHK-MFK 102 (220)
T ss_dssp TCSEEECCSSCCCEEC--CCCCGGGCTTCCEEECCSS-CCCEEC-----TTTTTTCTTCCEEECCSS-CCCCCCGG-GGT
T ss_pred CCCEEEcCCCcCCccC--chhhhccCCCCCEEECCCC-cCCEEC-----HHHhCCCCCCCEEECCCC-ccCccCHh-Hhc
Confidence 4566666665322110 0011256788888888874 333211 112345688888888876 44332111 124
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 203 (257)
.+++|++|+++++ .++......+ ..+++|++|+++++ .++......+ ..+++|++|++++++
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDN-QITTVAPGAF-DTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTS-CCCCBCTTTT-TTCTTCCEEECCSCC
T ss_pred CCcCCCEEECCCC-cCCeECHhHc-CCCccCCEEECCCC-cCCEECHHHh-cCCCCCCEEEecCcC
Confidence 5788888888876 4443211122 35678888888886 5554222223 347888888888865
No 121
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.34 E-value=4.2e-09 Score=82.45 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=15.3
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcC-CCCCeEecCC
Q 025143 192 QELESLNLTRCVKLTDGGLQKILIKC-SSLRSLNLYA 227 (257)
Q Consensus 192 ~~L~~L~l~~~~~l~~~~l~~l~~~~-~~L~~L~l~~ 227 (257)
++|++|+++++..++... ...+.++ ++|++|++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp CEEEEEECTTCTTCCEEC-TTTTTTCSBCCSEEECTT
T ss_pred CCCCEEEcCCCCCcccCC-HHHhhccccCCcEEECCC
Confidence 455555555542233111 1113344 5555555555
No 122
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.32 E-value=9.2e-08 Score=85.49 Aligned_cols=134 Identities=10% Similarity=-0.005 Sum_probs=89.3
Q ss_pred cCCCCCccEEecCCCCCCChH----------------HHHHHHh--cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEE
Q 025143 110 LGSLQDLESLNLNGCQKISDK----------------GIEIISS--TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDL 171 (257)
Q Consensus 110 ~~~~~~L~~L~L~~~~~~~~~----------------~l~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 171 (257)
.+.+++|++|+|+++ .+.+. .+..-.. .+++|++|++++|. +....-..+ ..+++|++|
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFL-KALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTT-TTCSSCCEE
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHHH-hcCCCCCEE
Confidence 355789999999988 56652 0222223 68999999999873 332111222 478899999
Q ss_pred eccCCCCCCH-HHHHHHHh-----hCCCCCEEeccCCCCCCHHHHHH--HHhcCCCCCeEecCCCCCCc-hHHHHHHHHh
Q 025143 172 NLSGCKNLLD-KSLQLIAD-----NYQELESLNLTRCVKLTDGGLQK--ILIKCSSLRSLNLYALSGYI-MMSQYLCIIF 242 (257)
Q Consensus 172 ~l~~~~~l~~-~~l~~l~~-----~~~~L~~L~l~~~~~l~~~~l~~--l~~~~~~L~~L~l~~c~~~~-~~~~~~~~~~ 242 (257)
++++|..+++ .....+.. .+++|++|++++| .++ .++. .+.++++|++|+++++. ++ ... .+..
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip---~~~~ 351 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQ-LEGKLP---AFGS 351 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCC-CEEECC---CCEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCc-Cccchh---hhCC
Confidence 9999843777 44444443 2489999999996 566 3444 57789999999999965 43 222 3345
Q ss_pred ccccceeeccc
Q 025143 243 SLSVRISNLLD 253 (257)
Q Consensus 243 ~~~L~~L~l~~ 253 (257)
.++|+.|++.+
T Consensus 352 l~~L~~L~L~~ 362 (636)
T 4eco_A 352 EIKLASLNLAY 362 (636)
T ss_dssp EEEESEEECCS
T ss_pred CCCCCEEECCC
Confidence 56777777654
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.31 E-value=5.2e-08 Score=81.02 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=66.7
Q ss_pred cCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 025143 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (257)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (257)
.+++|+.|+++++ .++... ...+..+++|++|+|+++ .+....- .....+++|++|+++++ .++......+
T Consensus 62 ~l~~L~~L~L~~N-~i~~i~-----~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~ 132 (361)
T 2xot_A 62 RLTNLHSLLLSHN-HLNFIS-----SEAFVPVPNLRYLDLSSN-HLHTLDE-FLFSDLQALEVLLLYNN-HIVVVDRNAF 132 (361)
T ss_dssp CCTTCCEEECCSS-CCCEEC-----TTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTT
T ss_pred cccccCEEECCCC-cCCccC-----hhhccCCCCCCEEECCCC-cCCcCCH-HHhCCCcCCCEEECCCC-cccEECHHHh
Confidence 5566777777653 232111 111234566777777665 3332111 11234567777777655 3432111111
Q ss_pred HHcCCCCCEEeccCCCCCCHHHHHHHH--hhCCCCCEEeccCCCCCCHHHHHHHHhcCCC--CCeEecCCCCCCchHH
Q 025143 162 VKNCKHIIDLNLSGCKNLLDKSLQLIA--DNYQELESLNLTRCVKLTDGGLQKILIKCSS--LRSLNLYALSGYIMMS 235 (257)
Q Consensus 162 ~~~~~~L~~L~l~~~~~l~~~~l~~l~--~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~--L~~L~l~~c~~~~~~~ 235 (257)
..+++|++|+++++ .++.-....+. ..+++|++|+++++ .++.-.... +..++. ++.|++.+.+..-+..
T Consensus 133 -~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 133 -EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTD-LQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp -TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHH-HHHSCHHHHTTEECCSSCEECCHH
T ss_pred -CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHH-hhhccHhhcceEEecCCCccCCcC
Confidence 34566777777765 34331111110 23667777777664 444322222 334444 3667776655544444
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.31 E-value=3.9e-08 Score=76.01 Aligned_cols=130 Identities=13% Similarity=0.147 Sum_probs=85.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 193 (257)
++|+.|+++++ .+...... ....+++|++|+++++ .++......+ ..+++|++|+++++ .++.-. ..++..+++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPG-AFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGN-KITELP-KSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred cCCCEEECCCC-cCCCcCHh-HhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCC-cCCccC-HhHccCCCC
Confidence 68999999987 55432211 1245789999999987 5543221222 46789999999997 555311 122345899
Q ss_pred CCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 194 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
|++|+++++ .++.... ..+.++++|++|+++++. ++.... ..+...++|+.|++.+
T Consensus 106 L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 106 LQLLLLNAN-KINCLRV-DAFQDLHNLNLLSLYDNK-LQTIAK-GTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCS
T ss_pred CCEEECCCC-CCCEeCH-HHcCCCCCCCEEECCCCc-CCEECH-HHHhCCCCCCEEEeCC
Confidence 999999995 5654322 235678999999999954 443321 1234567888888765
No 125
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.30 E-value=4.2e-09 Score=82.44 Aligned_cols=179 Identities=8% Similarity=0.046 Sum_probs=103.9
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
...+.+++++.....- ..-.+..+++|+.|+++++..++.- .......+++|++|++++|..+..... ...
T Consensus 31 ~~l~~L~l~~n~l~~i---~~~~~~~l~~L~~L~l~~n~~l~~i-----~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI---PSHAFSNLPNISRIYVSIDVTLQQL-----ESHSFYNLSKVTHIEIRNTRNLTYIDP-DAL 101 (239)
T ss_dssp TTCCEEEEESCCCSEE---CTTTTTTCTTCCEEEEECCSSCCEE-----CTTTEESCTTCCEEEEEEETTCCEECT-TSE
T ss_pred CcccEEEEeCCcceEE---CHHHccCCCCCcEEeCCCCCCccee-----CHhHcCCCcCCcEEECCCCCCeeEcCH-HHh
Confidence 3566777776532210 1112356789999999886423321 111234578999999986324443211 112
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCCCCC---EEeccCCCCCCHHHHHHHHhhCCCCC-EEeccCCCCCCHHHHHH
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHII---DLNLSGCKNLLDKSLQLIADNYQELE-SLNLTRCVKLTDGGLQK 212 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~l~~~~l~~l~~~~~~L~-~L~l~~~~~l~~~~l~~ 212 (257)
..+++|++|+++++ .++. +.. ...+++|+ +|+++++..++.-....+ ..+++|+ +|+++++ .++.-.. .
T Consensus 102 ~~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n-~l~~i~~-~ 174 (239)
T 2xwt_C 102 KELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNN-GFTSVQG-Y 174 (239)
T ss_dssp ECCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSC-CCCEECT-T
T ss_pred CCCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCC-CCcccCH-h
Confidence 35789999999876 3433 222 23667777 999998744543221222 3488999 9999885 4552211 1
Q ss_pred HHhcCCCCCeEecCCCCCCchHHHHHHHHhc-cccceeeccc
Q 025143 213 ILIKCSSLRSLNLYALSGYIMMSQYLCIIFS-LSVRISNLLD 253 (257)
Q Consensus 213 l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~-~~L~~L~l~~ 253 (257)
.+.. ++|++|+++++..++..... .+... ++|+.|++.+
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTT
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCC
Confidence 2233 78999999997545433211 23345 7888888764
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.25 E-value=4e-08 Score=81.72 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=94.9
Q ss_pred CCccEEeccCCCCCchHHHHHHHHhccC-CCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 025143 84 RHVREINLEFAQDIEDRHLELLKTKCLG-SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (257)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~-~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (257)
+.++.|+++++ .++.... .... .+++|+.|+|+++ .+....-.. ...+++|++|+++++ .++..... ..
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~-----~~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~-~~ 108 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRA-----EWTPTRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSN-HLHTLDEF-LF 108 (361)
T ss_dssp TTCSEEECCSS-CCCEECT-----TSSSSCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTT-TT
T ss_pred CCCCEEECCCC-CCCccCh-----hhhhhcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCC-cCCcCCHH-Hh
Confidence 46899999985 4443211 1122 5799999999987 554322111 246799999999987 55432111 12
Q ss_pred HcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHH--HhcCCCCCeEecCCCCCCchHHHHHHH
Q 025143 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKI--LIKCSSLRSLNLYALSGYIMMSQYLCI 240 (257)
Q Consensus 163 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l--~~~~~~L~~L~l~~c~~~~~~~~~~~~ 240 (257)
..+++|+.|+++++ .++......+ ..+++|++|+++++ .++.-....+ ...+++|+.|+|+++ .++..... .+
T Consensus 109 ~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~ 183 (361)
T 2xot_A 109 SDLQALEVLLLYNN-HIVVVDRNAF-EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT-DL 183 (361)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-HH
T ss_pred CCCcCCCEEECCCC-cccEECHHHh-CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-Hh
Confidence 46789999999998 5654322233 34899999999995 5553211111 146899999999994 55544332 22
Q ss_pred Hhccc--cceeeccc
Q 025143 241 IFSLS--VRISNLLD 253 (257)
Q Consensus 241 ~~~~~--L~~L~l~~ 253 (257)
...++ ++.|++.+
T Consensus 184 ~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 184 QKLPAWVKNGLYLHN 198 (361)
T ss_dssp HHSCHHHHTTEECCS
T ss_pred hhccHhhcceEEecC
Confidence 33333 35666544
No 127
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.22 E-value=3e-08 Score=81.44 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=49.5
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHh--
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI-- 215 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~-- 215 (257)
.+++|++|+++++ .++......+ ..+++|++|++++| .++. +..-...+++|++|+++++ .++......+..
T Consensus 215 ~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 215 RYSKLYRLGLGHN-QIRMIENGSL-SFLPTLRELHLDNN-KLSR--VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVG 288 (332)
T ss_dssp TCTTCSCCBCCSS-CCCCCCTTGG-GGCTTCCEEECCSS-CCCB--CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSS
T ss_pred CCCCCCEEECCCC-cCCcCChhHh-hCCCCCCEEECCCC-cCee--cChhhhcCccCCEEECCCC-CCCccChhHccccc
Confidence 3456666666654 3332211111 35566666666665 4442 2111233666777777664 344332222111
Q ss_pred ---cCCCCCeEecCCCCCCchHHHHHHHHhccccceeecc
Q 025143 216 ---KCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLL 252 (257)
Q Consensus 216 ---~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~ 252 (257)
..+.|+.|++++++..............++|+.+++.
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 1245666666665432111111223445555555554
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.16 E-value=1.4e-07 Score=71.30 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=33.0
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|++|+|+++ .+...... ....+++|++|+++++ .++......+ ..+++|++|+++++ .++......+ ..++
T Consensus 53 l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~ 126 (192)
T 1w8a_A 53 LPHLVKLELKRN-QLTGIEPN-AFEGASHIQELQLGEN-KIKEISNKMF-LGLHQLKTLNLYDN-QISCVMPGSF-EHLN 126 (192)
T ss_dssp CTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSC-CCCEECSSSS-TTCTTCCEEECCSS-CCCEECTTSS-TTCT
T ss_pred CCCCCEEECCCC-CCCCcCHh-HcCCcccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCC-cCCeeCHHHh-hcCC
Confidence 355555555554 33221100 1123455555555544 3322111111 23445555555554 3332111111 1244
Q ss_pred CCCEEeccCC
Q 025143 193 ELESLNLTRC 202 (257)
Q Consensus 193 ~L~~L~l~~~ 202 (257)
+|++|+++++
T Consensus 127 ~L~~L~L~~N 136 (192)
T 1w8a_A 127 SLTSLNLASN 136 (192)
T ss_dssp TCCEEECTTC
T ss_pred CCCEEEeCCC
Confidence 5555555553
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.14 E-value=4.4e-07 Score=68.56 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=27.0
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCC
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSG 230 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ 230 (257)
.+++|++|+++++ .++......+. .+++|++|+++++ .++.-. ...+..+++|+.|++++.+.
T Consensus 76 ~l~~L~~L~Ls~N-~l~~i~~~~f~-~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 76 NMTQLLTLILSYN-RLRCIPPRTFD-GLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCTTCCEEECCSS-CCCBCCTTTTT-TCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCC-ccCEeCHHHhC-CCCCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCCe
Confidence 3455555555554 33321111122 2555555555553 333111 11233455556666655443
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=5.4e-07 Score=79.37 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=85.3
Q ss_pred CCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHH
Q 025143 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (257)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 163 (257)
..|+.|+++++ .++. +.. .+.+++|+.|+|+++ .+.. +..-...+++|++|+++++ .++. +..+ .
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-----~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l-~ 505 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-----LEQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDN-ALEN--VDGV-A 505 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-----GGGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCC--CGGG-T
T ss_pred cCceEEEecCC-CCCC--CcC-----ccccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCC-CCCC--Cccc-C
Confidence 36889999985 4443 111 234689999999987 5542 2222456899999999987 5554 3333 4
Q ss_pred cCCCCCEEeccCCCCCCHHH-HHHHHhhCCCCCEEeccCCCCCCHH--HHHHHHhcCCCCCeEec
Q 025143 164 NCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRCVKLTDG--GLQKILIKCSSLRSLNL 225 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~-l~~l~~~~~~L~~L~l~~~~~l~~~--~l~~l~~~~~~L~~L~l 225 (257)
.+++|++|++++| .++... ...+. .+++|+.|+++++ .++.. ....+...+|+|+.|++
T Consensus 506 ~l~~L~~L~Ls~N-~l~~~~~p~~l~-~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 506 NLPRLQELLLCNN-RLQQSAAIQPLV-SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TCSSCCEEECCSS-CCCSSSTTGGGG-GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcEEECCCC-CCCCCCCcHHHh-cCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 7899999999998 666532 33344 4999999999996 45432 23445567899999875
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.06 E-value=2.6e-07 Score=83.78 Aligned_cols=109 Identities=17% Similarity=0.040 Sum_probs=71.9
Q ss_pred cCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHh
Q 025143 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (257)
Q Consensus 110 ~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 189 (257)
...+++|+.|+|+++ .+..- ..-...+++|++|+|+++ .++ .+..-...+++|++|+|++| .++. +..-..
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l--~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNI--SANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLTS--LPAELG 290 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCC--CGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCSS--CCSSGG
T ss_pred hccCCCCcEEECCCC-CCCCC--ChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCCc--cChhhc
Confidence 455788999999887 33321 111125789999999977 555 22221247789999999997 5662 222234
Q ss_pred hCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCC
Q 025143 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSG 230 (257)
Q Consensus 190 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ 230 (257)
.+++|++|++++| .++ .+..-+.++++|++|+|+++..
T Consensus 291 ~l~~L~~L~L~~N-~l~--~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 291 SCFQLKYFYFFDN-MVT--TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGTTCSEEECCSS-CCC--CCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCCCCEEECCCC-CCC--ccChhhhcCCCccEEeCCCCcc
Confidence 4889999999886 555 3333366788999999999653
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.02 E-value=5.5e-07 Score=66.88 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=26.3
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCC
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSG 230 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ 230 (257)
.+++|++|+++++ .++..... ....+++|++|+++++ .++.. ....+..+++|++|++++++.
T Consensus 74 ~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 74 KLTKLTILYLHEN-KLQSLPNG-VFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccCEEECCCC-CccccCHH-HhhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCCCe
Confidence 3445555555554 33321111 1122455555555553 33311 111223445555555555443
No 133
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.96 E-value=1.6e-07 Score=77.05 Aligned_cols=133 Identities=12% Similarity=0.069 Sum_probs=80.3
Q ss_pred CCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHH
Q 025143 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (257)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 163 (257)
++|+.|+++++ .++... ......+++|++|+++++ .+.+..... ...+++|++|+++++ .++. +..-..
T Consensus 193 ~~L~~L~l~~n-~i~~~~-----~~~l~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~--lp~~l~ 261 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIE-----LEDLLRYSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDNN-KLSR--VPAGLP 261 (332)
T ss_dssp SSCSCCBCCSS-CCCCCC-----TTSSTTCTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCSS-CCCB--CCTTGG
T ss_pred CCCCEEECCCC-cCCccC-----HHHhcCCCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCCC-cCee--cChhhh
Confidence 35666666653 222211 112345789999999887 444322111 246899999999987 5552 222134
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHh-----hCCCCCEEeccCCCCCCH-HHHHHHHhcCCCCCeEecCCCC
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIAD-----NYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYALS 229 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~-----~~~~L~~L~l~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~ 229 (257)
.+++|++|+++++ .++......+.. ..+.|+.|++++++ +.. ......+..+++|+.++++++.
T Consensus 262 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 7899999999997 566533333322 14679999999975 432 1222335678999999998864
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.91 E-value=1.5e-05 Score=70.80 Aligned_cols=57 Identities=32% Similarity=0.248 Sum_probs=28.3
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCC
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS 229 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~ 229 (257)
.+++|+.|++++| .++. +. ..+++|+.|++++| .++ .++.-+.++++|+.|++++++
T Consensus 239 ~l~~L~~L~Ls~N-~L~~--lp---~~~~~L~~L~Ls~N-~L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 239 LPSELKELMVSGN-RLTS--LP---MLPSGLLSLSVYRN-QLT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSS-CCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred CCCcCcEEECCCC-CCCc--CC---cccccCcEEeCCCC-CCC--cCCHHHhhccccCEEEecCCC
Confidence 3455555555554 3332 11 13455666666664 344 222234455666666666643
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.78 E-value=3.6e-06 Score=63.50 Aligned_cols=105 Identities=18% Similarity=0.083 Sum_probs=68.4
Q ss_pred CCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 025143 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (257)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 219 (257)
++|++|+++++ .++. +......+++|++|+++++ .++......+ ..+++|++|+++++ .++..... .+.++++
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPR-TFDGLKS 103 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTT-TTTTCTT
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCCC-ccCEeCHH-HhCCCCC
Confidence 57888888866 4442 1122347789999999997 5554222223 34899999999995 56543222 3567899
Q ss_pred CCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 220 LRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 220 L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
|++|+++++ .++.... ..+...++|+.|++.+
T Consensus 104 L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 104 LRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCS
T ss_pred CCEEECCCC-CCCeeCh-hhhhcCccccEEEeCC
Confidence 999999995 4543221 1234567888888764
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.77 E-value=2.8e-05 Score=69.12 Aligned_cols=114 Identities=25% Similarity=0.233 Sum_probs=75.2
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
+++|+.|+++++ .+.. +....++|+.|.++++ .++. +...+++|++|++++| .++. + ...++
T Consensus 180 ~~~L~~L~Ls~N-~l~~-----l~~~~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N-~L~~--l---p~~l~ 241 (622)
T 3g06_A 180 PSGLQELSVSDN-QLAS-----LPTLPSELYKLWAYNN-RLTS-----LPALPSGLKELIVSGN-RLTS--L---PVLPS 241 (622)
T ss_dssp CTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSS-----CCCCCTTCCEEECCSS-CCSC--C---CCCCT
T ss_pred CCCCcEEECCCC-CCCC-----CCCccchhhEEECcCC-cccc-----cCCCCCCCCEEEccCC-ccCc--C---CCCCC
Confidence 477888888776 4443 1123478888888866 4442 2234578999999987 5654 2 24578
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|+.|++++| .++. +.. .+++|++|++++|. ++.. ...+...++|+.|++.+
T Consensus 242 ~L~~L~Ls~N-~L~~--lp~---~~~~L~~L~Ls~N~-L~~l--p~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 242 ELKELMVSGN-RLTS--LPM---LPSGLLSLSVYRNQ-LTRL--PESLIHLSSETTVNLEG 293 (622)
T ss_dssp TCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CCSC--CGGGGGSCTTCEEECCS
T ss_pred cCcEEECCCC-CCCc--CCc---ccccCcEEeCCCCC-CCcC--CHHHhhccccCEEEecC
Confidence 8999999986 5552 222 66889999999864 4422 22456778888888764
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.75 E-value=1.3e-06 Score=65.80 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=77.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 193 (257)
++|+.|+++++ .+...........+++|++|+++++ .++......+ ..+++|++|+++++ .++......+ ..+++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~ 103 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQLGEN-KIKEISNKMF-LGLHQ 103 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSC-CCCEECSSSS-TTCTT
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHc-CCcccCCEEECCCC-cCCccCHHHh-cCCCC
Confidence 58999999987 5543221112346899999999987 5553221222 46789999999997 5655322223 34899
Q ss_pred CCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHH
Q 025143 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMS 235 (257)
Q Consensus 194 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~ 235 (257)
|++|+++++ .++... ...+..+++|++|++++.+...+..
T Consensus 104 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 104 LKTLNLYDN-QISCVM-PGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEEECCSS-CCCEEC-TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCEEECCCC-cCCeeC-HHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999999995 566422 2235678999999999976655544
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=5.2e-05 Score=59.98 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=16.3
Q ss_pred HcCCCCCEEeccCCCCCCH-HHHHHHHhhCCCCCEEeccC
Q 025143 163 KNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTR 201 (257)
Q Consensus 163 ~~~~~L~~L~l~~~~~l~~-~~l~~l~~~~~~L~~L~l~~ 201 (257)
..+++|+.|+|+++ .++. ..+..+...+++|+.|++++
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence 34455555555554 3332 11222223355555555554
No 139
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.70 E-value=5e-06 Score=73.13 Aligned_cols=134 Identities=18% Similarity=0.132 Sum_probs=86.4
Q ss_pred CceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHh
Q 025143 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (257)
Q Consensus 58 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 137 (257)
.++.+++++....+ +...-+++|+.|+++++ .++.- . ..+++|+.|+++++ .++. +..+
T Consensus 60 ~L~~L~Ls~n~L~~------lp~~l~~~L~~L~Ls~N-~l~~i-----p----~~l~~L~~L~Ls~N-~l~~--ip~l-- 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSS------LPDNLPPQITVLEITQN-ALISL-----P----ELPASLEYLDACDN-RLST--LPEL-- 118 (571)
T ss_dssp TCSEEECCSSCCSC------CCSCCCTTCSEEECCSS-CCSCC-----C----CCCTTCCEEECCSS-CCSC--CCCC--
T ss_pred CccEEEeCCCCCCc------cCHhHcCCCCEEECcCC-CCccc-----c----cccCCCCEEEccCC-CCCC--cchh--
Confidence 57788888754321 11112478999999885 34421 1 23589999999887 5544 2211
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 217 (257)
..+|++|+++++ .++. +.. .+++|+.|++++| .++. +. ..+++|++|++++| .++. ++. +.
T Consensus 119 -~~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~l~~--lp---~~l~~L~~L~Ls~N-~L~~--lp~-l~-- 179 (571)
T 3cvr_A 119 -PASLKHLDVDNN-QLTM--LPE---LPALLEYINADNN-QLTM--LP---ELPTSLEVLSVRNN-QLTF--LPE-LP-- 179 (571)
T ss_dssp -CTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSS-CCSC--CCC-CC--
T ss_pred -hcCCCEEECCCC-cCCC--CCC---cCccccEEeCCCC-ccCc--CC---CcCCCcCEEECCCC-CCCC--cch-hh--
Confidence 238999999876 5543 222 5788999999997 5554 22 24789999999986 4553 332 22
Q ss_pred CCCCeEecCCCCCCc
Q 025143 218 SSLRSLNLYALSGYI 232 (257)
Q Consensus 218 ~~L~~L~l~~c~~~~ 232 (257)
++|++|+++++ .++
T Consensus 180 ~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 180 ESLEALDVSTN-LLE 193 (571)
T ss_dssp TTCCEEECCSS-CCS
T ss_pred CCCCEEECcCC-CCC
Confidence 78999999985 454
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.69 E-value=3.7e-06 Score=76.23 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=73.1
Q ss_pred HhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHh
Q 025143 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI 215 (257)
Q Consensus 136 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 215 (257)
...+++|+.|+|+++ .+.. +..-...+++|++|+|++| .++. +..-...+++|++|+|+++ .++ .+..-+.
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFN--ISANIFKYDFLTRLYLNGN-SLTE--LPAEIKNLSNLRVLDLSHN-RLT--SLPAELG 290 (727)
T ss_dssp --CCCCCCEEECTTS-CCSC--CCGGGGGCCSCSCCBCTTS-CCSC--CCGGGGGGTTCCEEECTTS-CCS--SCCSSGG
T ss_pred hccCCCCcEEECCCC-CCCC--CChhhcCCCCCCEEEeeCC-cCcc--cChhhhCCCCCCEEeCcCC-cCC--ccChhhc
Confidence 346789999999987 4432 1111226899999999998 6662 3322345999999999996 566 3444467
Q ss_pred cCCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 216 KCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 216 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
++++|++|+|+++. ++... ..+...++|+.|++.+
T Consensus 291 ~l~~L~~L~L~~N~-l~~lp--~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 291 SCFQLKYFYFFDNM-VTTLP--WEFGNLCNLQFLGVEG 325 (727)
T ss_dssp GGTTCSEEECCSSC-CCCCC--SSTTSCTTCCCEECTT
T ss_pred CCCCCCEEECCCCC-CCccC--hhhhcCCCccEEeCCC
Confidence 88999999999964 44322 2356678888888764
No 141
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.67 E-value=3.1e-05 Score=66.31 Aligned_cols=32 Identities=22% Similarity=0.119 Sum_probs=15.5
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025143 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYAL 228 (257)
Q Consensus 193 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 228 (257)
+|++|++++| .++ .+.. +..+++|++|+++++
T Consensus 216 ~L~~L~l~~n-~l~--~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 216 SLESIVAGNN-ILE--ELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp TCCEEECCSS-CCS--SCCC-CTTCTTCCEEECCSS
T ss_pred cccEEECcCC-cCC--cccc-cCCCCCCCEEECCCC
Confidence 4555555553 233 1222 345566666666664
No 142
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.66 E-value=9.4e-06 Score=64.31 Aligned_cols=45 Identities=27% Similarity=0.295 Sum_probs=38.6
Q ss_pred CcHHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCceEeeccc
Q 025143 21 TVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLRE 66 (257)
Q Consensus 21 ~~pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~l~~ 66 (257)
+|+|++..||+||+++|+++++.|||.|+.. +.++.+|+++-.++
T Consensus 8 LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l-a~D~~LWr~~l~rd 52 (312)
T 3l2o_B 8 LPIDVQLYILSFLSPHDLCQLGSTNHYWNET-VRDPILWRYFLLRD 52 (312)
T ss_dssp SCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH-HTCHHHHHHHHHSS
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hccchHHHHHHhcc
Confidence 4458999999999999999999999999776 88888898775443
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.66 E-value=5e-06 Score=61.60 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=67.4
Q ss_pred CCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 025143 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (257)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 218 (257)
.++|++|+++++ .++.... .....+++|++|+++++ .++.... .....+++|++|+++++ .++... ...+..++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~ 100 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN-KLQSLP-NGVFDKLT 100 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred CCCCcEEEeCCC-cccEeCH-HHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC-CccccC-HHHhhCCc
Confidence 367888888865 4442111 11246788999999987 5553211 12235899999999996 565321 22346789
Q ss_pred CCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 219 SLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 219 ~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
+|++|+++++ .++.... ......++|+.|++.+
T Consensus 101 ~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 101 QLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHT 133 (177)
T ss_dssp TCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCS
T ss_pred ccCEEECcCC-cceEeCH-HHhcCCcccCEEEecC
Confidence 9999999995 4543322 1234568888888764
No 144
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.56 E-value=0.00016 Score=61.86 Aligned_cols=9 Identities=11% Similarity=-0.038 Sum_probs=4.5
Q ss_pred CccEEeccC
Q 025143 85 HVREINLEF 93 (257)
Q Consensus 85 ~L~~L~l~~ 93 (257)
+|+.|++++
T Consensus 216 ~L~~L~l~~ 224 (454)
T 1jl5_A 216 SLESIVAGN 224 (454)
T ss_dssp TCCEEECCS
T ss_pred cccEEECcC
Confidence 455555544
No 145
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.52 E-value=2.4e-05 Score=68.84 Aligned_cols=91 Identities=11% Similarity=0.065 Sum_probs=44.5
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
+.++.+++++.... .+. ..+++|+.|+++++ .++. +..+ ..+|++|+++++ .++. +..
T Consensus 80 ~~L~~L~Ls~N~l~------~ip-~~l~~L~~L~Ls~N-~l~~--ip~l-------~~~L~~L~Ls~N-~l~~--lp~-- 137 (571)
T 3cvr_A 80 PQITVLEITQNALI------SLP-ELPASLEYLDACDN-RLST--LPEL-------PASLKHLDVDNN-QLTM--LPE-- 137 (571)
T ss_dssp TTCSEEECCSSCCS------CCC-CCCTTCCEEECCSS-CCSC--CCCC-------CTTCCEEECCSS-CCSC--CCC--
T ss_pred CCCCEEECcCCCCc------ccc-cccCCCCEEEccCC-CCCC--cchh-------hcCCCEEECCCC-cCCC--CCC--
Confidence 45777777765432 111 34577888888774 3332 1110 126666666655 3332 111
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCC
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 176 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 176 (257)
.+++|+.|+++++ .++. +. ..+++|++|++++|
T Consensus 138 -~l~~L~~L~Ls~N-~l~~--lp---~~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 138 -LPALLEYINADNN-QLTM--LP---ELPTSLEVLSVRNN 170 (571)
T ss_dssp -CCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSS
T ss_pred -cCccccEEeCCCC-ccCc--CC---CcCCCcCEEECCCC
Confidence 3456666666554 3332 11 13445555555554
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=8.1e-06 Score=66.77 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC-eEecCCCCCCch
Q 025143 155 DIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLR-SLNLYALSGYIM 233 (257)
Q Consensus 155 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~-~L~l~~c~~~~~ 233 (257)
...+..+...|++|+.++++++ .++.-.-.++ ..|++|+.+++... ++.-+-. .+.+|++|+ .+++.+ .++.
T Consensus 215 ~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF-~~~~~L~~l~l~~n--i~~I~~~-aF~~~~~L~~~l~l~~--~l~~ 287 (329)
T 3sb4_A 215 NADFKLIRDYMPNLVSLDISKT-NATTIPDFTF-AQKKYLLKIKLPHN--LKTIGQR-VFSNCGRLAGTLELPA--SVTA 287 (329)
T ss_dssp HHHHHHHHHHCTTCCEEECTTB-CCCEECTTTT-TTCTTCCEEECCTT--CCEECTT-TTTTCTTCCEEEEECT--TCCE
T ss_pred HHHHHHHHHhcCCCeEEECCCC-CcceecHhhh-hCCCCCCEEECCcc--cceehHH-HhhCChhccEEEEEcc--cceE
Confidence 3344444445677777777764 2332111222 33667777777552 2221111 245666666 666654 2222
Q ss_pred HHHHHHHHhccccceeec
Q 025143 234 MSQYLCIIFSLSVRISNL 251 (257)
Q Consensus 234 ~~~~~~~~~~~~L~~L~l 251 (257)
.+. ..+..+++|+.+++
T Consensus 288 I~~-~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 288 IEF-GAFMGCDNLRYVLA 304 (329)
T ss_dssp ECT-TTTTTCTTEEEEEE
T ss_pred Ech-hhhhCCccCCEEEe
Confidence 111 12344555666654
No 147
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.48 E-value=2.7e-05 Score=62.15 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=35.9
Q ss_pred ccCcHHHHHHHHcCCChhhhH-HHHhhcHHHHHHHhcCCCCceEe
Q 025143 19 KETVPKVIRIMSTRLSQRDII-SLLLVSPWLHRTLVSYPSLWLVI 62 (257)
Q Consensus 19 ~~~~pe~l~~If~~L~~~~l~-~~~~v~~~w~~~~~~~~~~~~~l 62 (257)
..+++|++..||++|+.++|+ +|+.|||+|+.. +.++.+|+..
T Consensus 52 ~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l-~~~~~~w~~~ 95 (297)
T 2e31_A 52 AELPEPLLLRVLAELPATELVQACRLVCLRWKEL-VDGAPLWLLK 95 (297)
T ss_dssp TSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH-HTSHHHHHHH
T ss_pred hhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH-hcChHHHHHH
Confidence 445458999999999999999 999999999876 6677777654
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.44 E-value=0.00028 Score=55.75 Aligned_cols=89 Identities=28% Similarity=0.309 Sum_probs=61.9
Q ss_pred HHHHhcCCCCcEEEecCCcccCH-HHHHHHHHcCCCCCEEeccCCCCCCHH-HHHHHHhhCCCCCEEeccCCCCCCH---
Q 025143 133 EIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRCVKLTD--- 207 (257)
Q Consensus 133 ~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~~l~~--- 207 (257)
..+...+|+|+.|+|+++ .++. .++..+...+++|+.|+|+++ .+++. .+..+. .+ +|++|++++++ +..
T Consensus 163 ~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~ 237 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGNS-LCDTFR 237 (267)
T ss_dssp HHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTST-TGGGCS
T ss_pred HHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCCc-CccccC
Confidence 344467899999999987 5543 234444568999999999997 66653 232222 23 89999999964 543
Q ss_pred ---HHHHHHHhcCCCCCeEecC
Q 025143 208 ---GGLQKILIKCSSLRSLNLY 226 (257)
Q Consensus 208 ---~~l~~l~~~~~~L~~L~l~ 226 (257)
.....++..+|+|+.||=.
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESSC
T ss_pred cchhHHHHHHHHCcccCeECCc
Confidence 3344567788999998753
No 149
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.36 E-value=4.2e-05 Score=65.03 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=40.9
Q ss_pred cccccccCcHHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcC-CCCceEeec
Q 025143 14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSY-PSLWLVIDL 64 (257)
Q Consensus 14 ~~~~~~~~~pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~-~~~~~~l~l 64 (257)
..+....+|+|++..||+||+.+++++|++|||.|++. +.+ +.+|+.+-+
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~-~~~~~~~w~~~~~ 61 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI-IRKSTSLWKKLLI 61 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH-HTTCHHHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHh
Confidence 34555566679999999999999999999999999987 444 788887643
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.30 E-value=2.9e-05 Score=57.14 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=36.9
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 193 (257)
++|+.|+|+++ .+....-. ....+++|++|+++++ .++.-.- .....+++|++|+++++ .++..... ....+++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPG-VFDRLTQLTRLDLDNN-QLTVLPA-GVFDKLTQLTQLSLNDN-QLKSIPRG-AFDNLKS 103 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred CCCcEEEcCCC-cCCccChh-hhcCcccCCEEECCCC-CcCccCh-hhccCCCCCCEEECCCC-ccCEeCHH-HhcCCCC
Confidence 56666666655 33321100 1123556666666654 3332110 11134556666666665 33321111 1223556
Q ss_pred CCEEeccCC
Q 025143 194 LESLNLTRC 202 (257)
Q Consensus 194 L~~L~l~~~ 202 (257)
|++|+++++
T Consensus 104 L~~L~L~~N 112 (170)
T 3g39_A 104 LTHIWLLNN 112 (170)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeCCC
Confidence 666666553
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.29 E-value=3.2e-05 Score=57.21 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=36.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCC
Q 025143 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (257)
Q Consensus 114 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 193 (257)
++|+.|+|+++ .+....- .....+++|++|+++++ .++.-.. .+...+++|++|+++++ .++.-. ......+++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEP-GVFDHLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLNDN-HLKSIP-RGAFDNLKS 106 (174)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred CCCcEEEeCCC-CccccCH-HHhcCCcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCCC-ccceeC-HHHhccccC
Confidence 56666666655 3332110 11223556666666654 3332100 01124556666666654 333211 111223555
Q ss_pred CCEEeccCC
Q 025143 194 LESLNLTRC 202 (257)
Q Consensus 194 L~~L~l~~~ 202 (257)
|++|+++++
T Consensus 107 L~~L~L~~N 115 (174)
T 2r9u_A 107 LTHIYLYNN 115 (174)
T ss_dssp CSEEECCSS
T ss_pred CCEEEeCCC
Confidence 666666554
No 152
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.21 E-value=6.7e-05 Score=63.44 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=38.7
Q ss_pred cccccCcHH----HHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCceEe
Q 025143 16 TWSKETVPK----VIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62 (257)
Q Consensus 16 ~~~~~~~pe----~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l 62 (257)
+....+|+| ++..||+||+..+++++++|||+|++. +.++.+|+.+
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~-~~~~~~w~~~ 58 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV-TSDGMLWKKL 58 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH-HHHTTHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hcChHHHHHH
Confidence 344455558 999999999999999999999999886 6678889876
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.05 E-value=7.4e-05 Score=54.93 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=35.0
Q ss_pred CCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 025143 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (257)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 219 (257)
++|++|+++++ .++...-..+ ..+++|++|+++++ .++.-. ...+..+++|++|+++++ .++... ...+.++++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVF-DRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDN-QLKSIP-RGAFDNLKS 103 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred CCCcEEEcCCC-cCCccChhhh-cCcccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCC-ccCEeC-HHHhcCCCC
Confidence 45555555544 3322111111 24455666666554 333211 111123555666666553 333110 112334555
Q ss_pred CCeEecCCC
Q 025143 220 LRSLNLYAL 228 (257)
Q Consensus 220 L~~L~l~~c 228 (257)
|++|++++.
T Consensus 104 L~~L~L~~N 112 (170)
T 3g39_A 104 LTHIWLLNN 112 (170)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeCCC
Confidence 566666553
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.01 E-value=8.5e-05 Score=54.86 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=43.0
Q ss_pred CCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 025143 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (257)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 219 (257)
++|++|+++++ .++...-. ....+++|++|+++++ .++.-. ...+..+++|++|+++++ .++.-. ...+..+++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPG-VFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDN-HLKSIP-RGAFDNLKS 106 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred CCCcEEEeCCC-CccccCHH-HhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCC-ccceeC-HHHhccccC
Confidence 56777777655 33321111 1235566777777765 444311 111233667777777664 344211 112445667
Q ss_pred CCeEecCCCCC
Q 025143 220 LRSLNLYALSG 230 (257)
Q Consensus 220 L~~L~l~~c~~ 230 (257)
|++|++++.+.
T Consensus 107 L~~L~L~~N~~ 117 (174)
T 2r9u_A 107 LTHIYLYNNPW 117 (174)
T ss_dssp CSEEECCSSCB
T ss_pred CCEEEeCCCCc
Confidence 77777766543
No 155
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.01 E-value=2.9e-06 Score=70.10 Aligned_cols=182 Identities=10% Similarity=0.065 Sum_probs=89.8
Q ss_pred CCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHH
Q 025143 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (257)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~ 136 (257)
+..+++++++..... +..-.+..+++|+.|+++++...+. +....+.++++++++.+.++..+....- ...
T Consensus 30 ~~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~-----i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f 100 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEV-----IEADVFSNLPKLHEIRIEKANNLLYINP-EAF 100 (350)
T ss_dssp TTCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCE-----ECTTSBCSCTTCCEEEEEEETTCCEECT-TSB
T ss_pred CCCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCc-----cChhHhhcchhhhhhhcccCCcccccCc-hhh
Confidence 345666666543210 1111235667777777776432111 1111123345555443322213322110 112
Q ss_pred hcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhc
Q 025143 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (257)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 216 (257)
..+++|++|+++++ .++...-.. .....++..|++.++..+..-....+......++.|+++++ .++. +..-+..
T Consensus 101 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~--i~~~~f~ 175 (350)
T 4ay9_X 101 QNLPNLQYLLISNT-GIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQE--IHNSAFN 175 (350)
T ss_dssp CCCTTCCEEEEEEE-CCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCE--ECTTSST
T ss_pred hhcccccccccccc-ccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccC--CChhhcc
Confidence 35678888888765 333211000 01234567777766544443111222222346888999884 5652 2221224
Q ss_pred CCCCCeEecCCCCCCchHHHHHHHHhccccceeeccc
Q 025143 217 CSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISNLLD 253 (257)
Q Consensus 217 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (257)
.++|++|++.+++.++..... .....++|+.|++++
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPND-VFHGASGPVILDISR 211 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTT
T ss_pred ccchhHHhhccCCcccCCCHH-HhccCcccchhhcCC
Confidence 467999999887776644321 235678888888765
No 156
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.99 E-value=0.00022 Score=60.38 Aligned_cols=48 Identities=8% Similarity=0.098 Sum_probs=39.0
Q ss_pred cccccccCcHHHHHHHHcCCChhhhHHHHhhcHHHHHHHhcCCCCceEe
Q 025143 14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62 (257)
Q Consensus 14 ~~~~~~~~~pe~l~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l 62 (257)
..+....+|+|++..||+||+..++.++++|||+|+.. +.+...|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~-~~~~~~w~~~ 62 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL-AEDNLLWREK 62 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH-HTCSHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh-cCchhHhhhh
Confidence 34555566668999999999999999999999999876 6666677754
No 157
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.87 E-value=4.9e-06 Score=68.74 Aligned_cols=165 Identities=15% Similarity=0.084 Sum_probs=91.7
Q ss_pred CCCCceEeecccccchhhHHHHHhcCccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHH
Q 025143 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (257)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ 134 (257)
.-+.++.+++++....+. +..-.+..+++++++....+..+.. +....+..+++|++|+++++ .+....-..
T Consensus 52 ~l~~L~~L~Ls~N~i~~~--i~~~~f~~L~~l~~~l~~~~N~l~~-----l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~ 123 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEV--IEADVFSNLPKLHEIRIEKANNLLY-----INPEAFQNLPNLQYLLISNT-GIKHLPDVH 123 (350)
T ss_dssp TCTTCCEEEEECCTTCCE--ECTTSBCSCTTCCEEEEEEETTCCE-----ECTTSBCCCTTCCEEEEEEE-CCSSCCCCT
T ss_pred CCCCCCEEECcCCCCCCc--cChhHhhcchhhhhhhcccCCcccc-----cCchhhhhcccccccccccc-ccccCCchh
Confidence 346788889887643211 1111234566766655443333332 11222456799999999876 333211000
Q ss_pred HHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHH
Q 025143 135 ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKIL 214 (257)
Q Consensus 135 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 214 (257)
.....++..|++.++..++.-....+......++.|+++++ .++. +..-.....+|+.|++++++.++.-.- ..+
T Consensus 124 -~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f 198 (350)
T 4ay9_X 124 -KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQE--IHNSAFNGTQLDELNLSDNNNLEELPN-DVF 198 (350)
T ss_dssp -TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCE--ECTTSSTTEEEEEEECTTCTTCCCCCT-TTT
T ss_pred -hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccC--CChhhccccchhHHhhccCCcccCCCH-HHh
Confidence 11235677888876555443221122222347889999987 5553 111111256799999987666653211 235
Q ss_pred hcCCCCCeEecCCCCCCch
Q 025143 215 IKCSSLRSLNLYALSGYIM 233 (257)
Q Consensus 215 ~~~~~L~~L~l~~c~~~~~ 233 (257)
.++++|++|+++++ .++.
T Consensus 199 ~~l~~L~~LdLs~N-~l~~ 216 (350)
T 4ay9_X 199 HGASGPVILDISRT-RIHS 216 (350)
T ss_dssp TTEECCSEEECTTS-CCCC
T ss_pred ccCcccchhhcCCC-CcCc
Confidence 67899999999985 4543
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.71 E-value=0.00023 Score=58.06 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=72.4
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCC
Q 025143 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (257)
Q Consensus 113 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 192 (257)
..+++.+.+.+ .+....+..+...|++|+.+++.++ .++.-+-.. ...|++|+.+++..+ ++.-.-.++ ..|+
T Consensus 201 ~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~~aF-~~~~ 273 (329)
T 3sb4_A 201 PRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQRVF-SNCG 273 (329)
T ss_dssp GGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTT-TTTCTTCCEEECCTT--CCEECTTTT-TTCT
T ss_pred ccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHhh-hhCCCCCCEEECCcc--cceehHHHh-hCCh
Confidence 35677777765 4566666666667888888888764 233221111 246788888888774 333222223 3488
Q ss_pred CCC-EEeccCCCCCCHHHHHHHHhcCCCCCeEecCCCCCCchHHHHHHHHhccccceee
Q 025143 193 ELE-SLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGYIMMSQYLCIIFSLSVRISN 250 (257)
Q Consensus 193 ~L~-~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~ 250 (257)
+|+ .+.+.. .++.-+- ..+.+|++|+.+++.+ +.++..+.. .+...++|+.+.
T Consensus 274 ~L~~~l~l~~--~l~~I~~-~aF~~c~~L~~l~l~~-n~i~~I~~~-aF~~~~~L~~ly 327 (329)
T 3sb4_A 274 RLAGTLELPA--SVTAIEF-GAFMGCDNLRYVLATG-DKITTLGDE-LFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEEEECT--TCCEECT-TTTTTCTTEEEEEECS-SCCCEECTT-TTCTTCCCCEEE
T ss_pred hccEEEEEcc--cceEEch-hhhhCCccCCEEEeCC-CccCccchh-hhcCCcchhhhc
Confidence 888 888866 2332211 2256788888888865 233322211 234456666553
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.53 E-value=0.00043 Score=56.79 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=39.0
Q ss_pred CCCCccEEecCC-CCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhh
Q 025143 112 SLQDLESLNLNG-CQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190 (257)
Q Consensus 112 ~~~~L~~L~L~~-~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 190 (257)
.+++|+.|+|++ + .+....-. ....+++|+.|+|+++ .++...-. ....+++|++|+|+++ .++.-. ..+...
T Consensus 29 ~~~~L~~L~l~~~n-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~ 102 (347)
T 2ifg_A 29 GAENLTELYIENQQ-HLQHLELR-DLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLS-WKTVQG 102 (347)
T ss_dssp SCSCCSEEECCSCS-SCCEECGG-GSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCC-STTTCS
T ss_pred CCCCeeEEEccCCC-CCCCcChh-HhccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-ccceeC-HHHccc
Confidence 346677777764 3 33321111 1234566777777655 44331111 1135666666666665 443210 111121
Q ss_pred CCCCCEEeccCC
Q 025143 191 YQELESLNLTRC 202 (257)
Q Consensus 191 ~~~L~~L~l~~~ 202 (257)
+ .|+.|++.++
T Consensus 103 ~-~L~~l~l~~N 113 (347)
T 2ifg_A 103 L-SLQELVLSGN 113 (347)
T ss_dssp C-CCCEEECCSS
T ss_pred C-CceEEEeeCC
Confidence 2 2666666654
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.81 E-value=0.0014 Score=53.71 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=51.7
Q ss_pred ccCCCccEEeccCCCCCchHHHHHHHHhccCCCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 025143 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (257)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (257)
..+++|+.|+|++...++.. ....+..+++|+.|+|+++ .+....- .....+++|++|+|+++ .++.-. ..
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~-----~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~-~~ 98 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHL-----ELRDLRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFN-ALESLS-WK 98 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEE-----CGGGSCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSS-CCSCCC-ST
T ss_pred CCCCCeeEEEccCCCCCCCc-----ChhHhccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCC-ccceeC-HH
Confidence 56678899999852334321 1122355788999999887 5544221 12246788999999876 444211 01
Q ss_pred HHHcCCCCCEEeccCCC
Q 025143 161 LVKNCKHIIDLNLSGCK 177 (257)
Q Consensus 161 l~~~~~~L~~L~l~~~~ 177 (257)
+...+ .|+.|++.++.
T Consensus 99 ~~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGL-SLQELVLSGNP 114 (347)
T ss_dssp TTCSC-CCCEEECCSSC
T ss_pred HcccC-CceEEEeeCCC
Confidence 11223 38899998863
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.14 E-value=0.0039 Score=52.32 Aligned_cols=33 Identities=6% Similarity=0.215 Sum_probs=14.7
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCC
Q 025143 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA 227 (257)
Q Consensus 191 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 227 (257)
|++|+.+.+.. .++.-+-. .+.+| +|+.+++.+
T Consensus 322 c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 322 NRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEG 354 (401)
T ss_dssp CCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECC
T ss_pred CCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcC
Confidence 55566665533 12211111 13455 566666654
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.58 E-value=0.049 Score=45.30 Aligned_cols=102 Identities=15% Similarity=0.340 Sum_probs=47.3
Q ss_pred cCCCCCccEEecCCC-CCCChHHHHHHHhcCCCCcEEEecCC-cccCHHHHHHHHHcCCCCCEEeccCC-CCCCHHHHHH
Q 025143 110 LGSLQDLESLNLNGC-QKISDKGIEIISSTCPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQL 186 (257)
Q Consensus 110 ~~~~~~L~~L~L~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~l~~ 186 (257)
+..|.+|+.+.+... ..+...+ ...|++|+.+.+... ..+.+.. ...|.+|+.+.+... ..+.+ .+
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~---~a 329 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGA----FMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILD---DA 329 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECT---TT
T ss_pred eeecccccEEecccccceecCcc----cccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehH---hH
Confidence 344566666666542 1112211 234566666666421 1222221 135666777666542 11222 22
Q ss_pred HHhhCCCCCEEeccCC-CCCCHHHHHHHHhcCCCCCeEecCC
Q 025143 187 IADNYQELESLNLTRC-VKLTDGGLQKILIKCSSLRSLNLYA 227 (257)
Q Consensus 187 l~~~~~~L~~L~l~~~-~~l~~~~l~~l~~~~~~L~~L~l~~ 227 (257)
+ ..|.+|+.+.+-.. ..+.+ . .+.+|++|+.+++.+
T Consensus 330 F-~~C~~L~~i~ip~sv~~I~~---~-aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 330 F-AGCEQLERIAIPSSVTKIPE---S-AFSNCTALNNIEYSG 366 (394)
T ss_dssp T-TTCTTCCEEEECTTCCBCCG---G-GGTTCTTCCEEEESS
T ss_pred h-hCCCCCCEEEECcccCEEhH---h-HhhCCCCCCEEEECC
Confidence 2 23666777666331 12221 1 245666777766654
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=90.46 E-value=0.02 Score=48.01 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=40.7
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHH----HHHHHHhcCCCCCeEecCCCCCCchHHHHHHHH
Q 025143 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDG----GLQKILIKCSSLRSLNLYALSGYIMMSQYLCII 241 (257)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~----~l~~l~~~~~~L~~L~l~~c~~~~~~~~~~~~~ 241 (257)
.+|+.+.+.. .++.-.-.++ ..|++|+.+.+.+.. +... --...+.+|++|+.+++.. .++..+.. ...
T Consensus 248 ~~L~~i~lp~--~i~~I~~~aF-~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~-aF~ 320 (401)
T 4fdw_A 248 SGITTVKLPN--GVTNIASRAF-YYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQG-LLG 320 (401)
T ss_dssp CCCSEEEEET--TCCEECTTTT-TTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTT-TTT
T ss_pred CCccEEEeCC--CccEEChhHh-hCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhh-hhc
Confidence 3566666644 2222111222 348888888886632 2100 0012356788888888864 23322211 234
Q ss_pred hccccceeecc
Q 025143 242 FSLSVRISNLL 252 (257)
Q Consensus 242 ~~~~L~~L~l~ 252 (257)
.+.+|+.+.+.
T Consensus 321 ~c~~L~~l~lp 331 (401)
T 4fdw_A 321 GNRKVTQLTIP 331 (401)
T ss_dssp TCCSCCEEEEC
T ss_pred CCCCccEEEEC
Confidence 55677777653
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.40 E-value=0.046 Score=45.47 Aligned_cols=79 Identities=11% Similarity=0.275 Sum_probs=35.0
Q ss_pred CCCCCccEEecCCC-CCCChHHHHHHHhcCCCCcEEEecCC-cccCHHHHHHHHHcCCCCCEEeccCC-CCCCHHHHHHH
Q 025143 111 GSLQDLESLNLNGC-QKISDKGIEIISSTCPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQLI 187 (257)
Q Consensus 111 ~~~~~L~~L~L~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~l~~l 187 (257)
.++++|+.+.+... ..+.+.+ ...|.+|+.+.+... ..+.+..+ ..|.+|+.+.+... ..+.+ .++
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~aF----~~C~~L~~i~ip~sv~~I~~---~aF 353 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDDAF----AGCEQLERIAIPSSVTKIPE---SAF 353 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEEECTTCCBCCG---GGG
T ss_pred ccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHhHh----hCCCCCCEEEECcccCEEhH---hHh
Confidence 34566666666431 1222222 234566666666421 12222211 35566666666432 12222 222
Q ss_pred HhhCCCCCEEeccC
Q 025143 188 ADNYQELESLNLTR 201 (257)
Q Consensus 188 ~~~~~~L~~L~l~~ 201 (257)
.+|++|+.+.+.+
T Consensus 354 -~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 354 -SNCTALNNIEYSG 366 (394)
T ss_dssp -TTCTTCCEEEESS
T ss_pred -hCCCCCCEEEECC
Confidence 2366666666655
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.99 E-value=0.14 Score=42.13 Aligned_cols=81 Identities=15% Similarity=0.322 Sum_probs=38.4
Q ss_pred cCCCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 025143 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (257)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 217 (257)
.|.+|+.+.+.. .++.-+-.. ...|++|+.+.+..+ .++.-.-.++ ..|.+|+.+.+.. .++.-+-. -+.+|
T Consensus 261 ~~~~l~~i~l~~--~i~~i~~~a-F~~c~~L~~i~l~~~-~i~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~~-aF~~C 332 (379)
T 4h09_A 261 NCTALKTLNFYA--KVKTVPYLL-CSGCSNLTKVVMDNS-AIETLEPRVF-MDCVKLSSVTLPT--ALKTIQVY-AFKNC 332 (379)
T ss_dssp TCTTCCEEEECC--CCSEECTTT-TTTCTTCCEEEECCT-TCCEECTTTT-TTCTTCCEEECCT--TCCEECTT-TTTTC
T ss_pred eeehhccccccc--cceeccccc-ccccccccccccccc-ccceehhhhh-cCCCCCCEEEcCc--cccEEHHH-HhhCC
Confidence 455666666642 122111111 135677777777653 2221111222 3377777777743 12211111 24567
Q ss_pred CCCCeEecC
Q 025143 218 SSLRSLNLY 226 (257)
Q Consensus 218 ~~L~~L~l~ 226 (257)
++|+++.+.
T Consensus 333 ~~L~~i~ip 341 (379)
T 4h09_A 333 KALSTISYP 341 (379)
T ss_dssp TTCCCCCCC
T ss_pred CCCCEEEEC
Confidence 777777763
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=80.08 E-value=0.19 Score=41.73 Aligned_cols=80 Identities=14% Similarity=0.284 Sum_probs=39.2
Q ss_pred cCCCCcEEEecCC-cccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhc
Q 025143 138 TCPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (257)
Q Consensus 138 ~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 216 (257)
.|.+|+.+.+... ..+.+.. ...|.+|+.+++... ++.-+-.++ ..|.+|+.+.+... ++.-+-. .+.+
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF-~~c~~L~~i~lp~~--l~~I~~~-aF~~ 364 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYL--VEEIGKRSF-RGCTSLSNINFPLS--LRKIGAN-AFQG 364 (394)
T ss_dssp TCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTTT-TTCTTCCEECCCTT--CCEECTT-TBTT
T ss_pred ccccccccccccccceechhh----hcCCCCCCEEEeCCc--ccEEhHHhc-cCCCCCCEEEECcc--ccEehHH-HhhC
Confidence 4566666666431 1122211 135667777777542 222111222 23777777777442 2211111 2557
Q ss_pred CCCCCeEecCC
Q 025143 217 CSSLRSLNLYA 227 (257)
Q Consensus 217 ~~~L~~L~l~~ 227 (257)
|++|+++++..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 77777777743
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=78.04 E-value=0.1 Score=43.40 Aligned_cols=99 Identities=11% Similarity=0.214 Sum_probs=59.4
Q ss_pred cCCCCCccEEecCCC-CCCChHHHHHHHhcCCCCcEEEecCC-cccCHHHHHHHHHcCCCCCEEeccCCCCCCHHHHHHH
Q 025143 110 LGSLQDLESLNLNGC-QKISDKGIEIISSTCPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLI 187 (257)
Q Consensus 110 ~~~~~~L~~L~L~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 187 (257)
...+.+|+.+.+... ..+.+.+ ...|.+|+.+++... ..+.+..+ ..|.+|+.+++... ++.-+-.++
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~aF----~~c~~L~~i~lp~~--l~~I~~~aF 362 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYLVEEIGKRSF----RGCTSLSNINFPLS--LRKIGANAF 362 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTTT----TTCTTCCEECCCTT--CCEECTTTB
T ss_pred ccccccccccccccccceechhh----hcCCCCCCEEEeCCcccEEhHHhc----cCCCCCCEEEECcc--ccEehHHHh
Confidence 345678888887642 2233333 346899999999632 22333222 47899999999763 332111333
Q ss_pred HhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeE
Q 025143 188 ADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSL 223 (257)
Q Consensus 188 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L 223 (257)
..|++|+.+.+... ++.. ..-+.+|++|+.+
T Consensus 363 -~~C~~L~~i~lp~~--~~~~--~~~F~~c~~L~~I 393 (394)
T 4fs7_A 363 -QGCINLKKVELPKR--LEQY--RYDFEDTTKFKWI 393 (394)
T ss_dssp -TTCTTCCEEEEEGG--GGGG--GGGBCTTCEEEEE
T ss_pred -hCCCCCCEEEECCC--CEEh--hheecCCCCCcEE
Confidence 35999999999652 3221 2235677777764
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=68.09 E-value=0.58 Score=38.41 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=44.0
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeEecCC-CCCCchHHHHHHHHh
Q 025143 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA-LSGYIMMSQYLCIIF 242 (257)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~-c~~~~~~~~~~~~~~ 242 (257)
.|.+|+.+.+... +..-.-.+ ...|++|+.+.+... .++.-+-. .+.+|++|+++.+.. ...+.+. ....
T Consensus 261 ~~~~l~~i~l~~~--i~~i~~~a-F~~c~~L~~i~l~~~-~i~~I~~~-aF~~c~~L~~i~lp~~l~~I~~~----aF~~ 331 (379)
T 4h09_A 261 NCTALKTLNFYAK--VKTVPYLL-CSGCSNLTKVVMDNS-AIETLEPR-VFMDCVKLSSVTLPTALKTIQVY----AFKN 331 (379)
T ss_dssp TCTTCCEEEECCC--CSEECTTT-TTTCTTCCEEEECCT-TCCEECTT-TTTTCTTCCEEECCTTCCEECTT----TTTT
T ss_pred eeehhcccccccc--ceeccccc-ccccccccccccccc-ccceehhh-hhcCCCCCCEEEcCccccEEHHH----HhhC
Confidence 5667777777552 32211122 234889999998653 23321112 367889999999853 2222222 2345
Q ss_pred ccccceeec
Q 025143 243 SLSVRISNL 251 (257)
Q Consensus 243 ~~~L~~L~l 251 (257)
..+|+.+.+
T Consensus 332 C~~L~~i~i 340 (379)
T 4h09_A 332 CKALSTISY 340 (379)
T ss_dssp CTTCCCCCC
T ss_pred CCCCCEEEE
Confidence 566776665
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=65.30 E-value=3.6 Score=28.10 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=27.6
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhhCCCCCEEeccCCCCCCHHHHHHH
Q 025143 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKI 213 (257)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 213 (257)
++|++|+|+++ .++.-... .+..+++|+.|+|++++..=|-.+..+
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~-~f~~l~~L~~L~L~~NP~~CdC~l~~l 76 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPG-LLDALPALRTAHLGANPWRCDCRLVPL 76 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTT-TGGGCTTCCEEECCSSCCBCSGGGHHH
T ss_pred cCCCEEECCCC-cCCccChh-hhhhccccCEEEecCCCeeccCccHHH
Confidence 36889999886 55432212 234478888888888665433334333
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=62.68 E-value=2.6 Score=28.80 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=26.2
Q ss_pred CCCcEEEecCCcccCHHHHHHHHHcCCCCCEEeccCCCCCCH
Q 025143 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 181 (257)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 181 (257)
++|++|+|+++ .++.-.-. ....+++|+.|+|+++...-+
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~-~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPG-LLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTT-TGGGCTTCCEEECCSSCCBCS
T ss_pred cCCCEEECCCC-cCCccChh-hhhhccccCEEEecCCCeecc
Confidence 47999999876 44432111 124678899999998755433
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.82 E-value=42 Score=21.51 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=15.5
Q ss_pred CCCCCccEEecCCC-CCCChHHHHHHHhcCCCCcEEEec
Q 025143 111 GSLQDLESLNLNGC-QKISDKGIEIISSTCPELKVFSIY 148 (257)
Q Consensus 111 ~~~~~L~~L~L~~~-~~~~~~~l~~l~~~~~~L~~L~l~ 148 (257)
.+|.+|+++.|... ..+.+.++ ..|.+|+.+.+.
T Consensus 17 ~~c~~L~~i~iP~~v~~Ig~~aF----~~C~~L~~i~~~ 51 (100)
T 2lz0_A 17 AGNTVIREITVQPNIGLLYDGMF----SGCTALEKLILT 51 (100)
T ss_dssp TTCTTCCCEEECTTSSCCCTTSS----TTCTTCCCEEEC
T ss_pred cCCCCCcEEEcCCchheEcHHHH----hccCCccEEEEc
Confidence 34455555555432 22233222 245555555554
Done!