BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025144
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
++GD VLDV CG G + L+ +V G+ S+ Q++ A++R + + +
Sbjct: 60 RSGDRVLDVGCGIGKPAVRLA--TARDVRVTGISISRPQVNQANARA--TAAGLANRVTF 115
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179
DA DLPF D FDA+ L + D+ +AL E RVL+PG +++ DF
Sbjct: 116 SYADAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADF 167
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 43 DNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 102
D+ + L F ++ K G K G VLDV G+G LS+ VG +GKV +D
Sbjct: 16 DDPSRLELFDPEKVLKEF-----GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDV 70
Query: 103 SKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALE 162
+ ++ A + V+K KN+E ++ + +P D D I M + + + K LE
Sbjct: 71 QEEMVNYAWEK---VNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLE 127
Query: 163 ESFRVLKPGSRISVLDFNKSTQ----PFTTAIQEWMI 195
E RV KP + ++++D+ K + P EW +
Sbjct: 128 ELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEV 164
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
+ + + + VLD+ G+G + S V + IG+D +K + +ASS +
Sbjct: 12 LXIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEXVEVASS---FAQE 65
Query: 120 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179
+N+ + +G A LPF D FD IT Y + D RKA+ E RVLK R ++D
Sbjct: 66 KGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH 125
Query: 180 NKSTQP 185
P
Sbjct: 126 YAPEDP 131
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
G VL+ CG G + +L++ ++ +D S L A + K KN+++++
Sbjct: 38 GAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTE---KNGIKNVKFLQ 93
Query: 130 GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF--- 186
+ LPF D FD I + + L ++ +AL+ +VLKPG I+V++ + + F
Sbjct: 94 ANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPE 153
Query: 187 -TTAIQEW 193
AI+ W
Sbjct: 154 GKKAIEAW 161
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 71 DNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMA--SSRQDLVSKACYKNIEW 127
D +LD+ CGSG +S ++ S+G V G+D + + +A ++R +++ E+
Sbjct: 32 DEILDIGCGSGKISL----ELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEF 87
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKR---KALEESFRVLKPGSRISVLDFNKS 182
+A L F D FD M L +V D + + ++E FRVLKPG+ + +++F ++
Sbjct: 88 KVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 35 FSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ 94
+ R+ P Y ++N + RI + K VLD+ CG G SFLL E G +
Sbjct: 6 YYRVFPTYTDINSQEY--RSRIETLEPLLXKYXKKRGKVLDLACGVGGFSFLL-EDYGFE 62
Query: 95 GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV 154
V+G+D S++ + A +K+ N+E++ GDA L F D FD + + +
Sbjct: 63 --VVGVDISEDXIRKARE----YAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116
Query: 155 --VDKRKALEESFRVLKPGSRI 174
++ + +E RVLKP +
Sbjct: 117 EPLELNQVFKEVRRVLKPSGKF 138
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K + VLDV G G ++ + V KV+ D +++ L +A + + ++ +E+
Sbjct: 36 KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARA---FIEGNGHQQVEY 89
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178
V+GDA PF+D F +T + + + E++RVLK G ++ ++D
Sbjct: 90 VQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD 140
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ----LSM 109
HR+ +A +W K G+ +L++ CG GDLS +L++QVGS G V G+D + L++
Sbjct: 31 HRL--AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL 87
Query: 110 ASSRQDLVSKACYK--NIEWVEGDALDL-PFSDCFFDAITMGYGL 151
+ L++ + + + DL P +D FD + + + L
Sbjct: 88 GQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSL 132
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110
G+ G VLD+ CG+G +L S+ VG GKVIG+D NQL +A
Sbjct: 80 GSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVA 124
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 19/150 (12%)
Query: 33 ELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSW--SGAKTGDNVLDVCCGSGDLSFLLSEQ 90
E + RIA YD+ + + +++ R+ S+ K VLD+ G+G S L E+
Sbjct: 19 EFYDRIARAYDSXYET---PKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER 75
Query: 91 VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI-TMGY 149
+V+ +D SK L +A + KN+ VE A DLPF F+A+ +G
Sbjct: 76 ---GFEVVLVDPSKEXLEVAREK-------GVKNV--VEAKAEDLPFPSGAFEAVLALGD 123
Query: 150 GLRNVVDKRKALEESFRVLKP-GSRISVLD 178
L V +K KA E RVL P G I+ +D
Sbjct: 124 VLSYVENKDKAFSEIRRVLVPDGLLIATVD 153
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
+ V+++G GD +++ GSG L+ L+ VG +G+V+ + R+D +K
Sbjct: 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEI----------REDF-AK 132
Query: 120 ACYKNIEWVE-GDALDLPFSDCF--FDAITMGYGLRNVVDKRKALEESFRVLKPG 171
++NI+W D + + D + + + + + ++ + +E + + LKPG
Sbjct: 133 LAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAAKALKPG 187
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
+ V+++G GD +++ GSG L+ L+ VG +G+V+ + R+D +K
Sbjct: 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEI----------REDF-AK 132
Query: 120 ACYKNIEWVE-GDALDLPFSDCF--FDAITMGYGLRNVVDKRKALEESFRVLKPG 171
++NI+W D + + D + + + + + ++ + +E + + LKPG
Sbjct: 133 LAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAAKALKPG 187
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110
M +S GD VL+ GSG +S LS+ VGSQG+VI + K+ +A
Sbjct: 96 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLA 146
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 36/191 (18%)
Query: 50 SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 109
S GQ + +M V K GD V+D CG+G+ + L+ VG G+V G D ++
Sbjct: 8 SLGQSHDYIKMFV-----KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDK--AI 60
Query: 110 ASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAITMGYGLRNVVDKRKALEESFRVL 168
A++ + L + ++ ++ + DC A+ G L
Sbjct: 61 ANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGY----------------L 104
Query: 169 KPGSRISVLDFNKSTQPFTT-----AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 223
G D + ST+P TT E ++ ++ V YG ++ K + EFL
Sbjct: 105 PSG------DHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEE-KEKVLEFL 157
Query: 224 TGKDLEKLALE 234
G D +K ++
Sbjct: 158 KGVDQKKFIVQ 168
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL--SMASSRQDLVSKACYKNIEW 127
G LDV GSG L+ + VG GKVIG+D K + S+ + R+D + ++
Sbjct: 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 137
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
V GD + +DAI +G V +AL + LKPG R+
Sbjct: 138 VVGDGRMGYAEEAPYDAIHVGAAAPVV---PQALIDQ---LKPGGRL 178
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132
VLDV CG G ++ LS + K +G+D S+ + R + ++ +++GD
Sbjct: 57 VLDVGCGDGYGTYKLSR---TGYKAVGVDISEVXIQKGKERGE------GPDLSFIKGDL 107
Query: 133 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 185
LPF + F+AI L + +AL E RVLK + + +P
Sbjct: 108 SSLPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKP 160
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
G+++L+V G+G + L Q +G++ S+ L++ R + W
Sbjct: 35 PPGESLLEVGAGTG---YWLRRLPYPQK--VGVEPSEAXLAVGRRRAPEAT--------W 81
Query: 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 187
V LPF FD + + L V D + L E+ RVL+PG + V+ ++ P+
Sbjct: 82 VRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGAL-VVGVLEALSPW- 139
Query: 188 TAIQEWMIDNVVVPVASGYGLAEE 211
A+ + + V+P A LA E
Sbjct: 140 AALYRRLGEKGVLPWAQARFLARE 163
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
+ + W G G VL++ G+G + ++S VG +G V+ +++S+ +A V +
Sbjct: 66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN---VER 122
Query: 120 ACYKNIEWVEGDA-LDLP-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176
+N+ +V GD +P FS +D I + G+ V E F LK G R+ V
Sbjct: 123 LGIENVIFVCGDGYYGVPEFSP--YDVIFVTVGVDEVP------ETWFTQLKEGGRVIV 173
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Query: 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS---RQDLVSKACYK 123
K GD ++D GSG + +L+ VGS GKV + + +A S + L+ + K
Sbjct: 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK 169
Query: 124 NIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183
+ EG F + DA+ + +V D +++ + LK G R + +
Sbjct: 170 VRDISEG------FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFA------TV 212
Query: 184 QPFTTAIQE 192
P T +QE
Sbjct: 213 CPTTNQVQE 221
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 16/86 (18%)
Query: 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--- 121
+ K+ D VL++ CG+G+L+ L + KVI +D +S V K C
Sbjct: 38 AKIKSSDIVLEIGCGTGNLTVKL---LPLAKKVITIDIDSRMISE-------VKKRCLYE 87
Query: 122 -YKNIEWVEGDALDLPFSDCFFDAIT 146
Y N+E EGDA+ F FD T
Sbjct: 88 GYNNLEVYEGDAIKTVFPK--FDVCT 111
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 74 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133
L++ G+G ++ L + + I LD L + RQ + + ++ V+ DA
Sbjct: 44 LELGVGTGRIALPL---IARGYRYIALDADAAXLEV--FRQKIAG--VDRKVQVVQADAR 96
Query: 134 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 171
+P D + + + V D K L E+ RVLKPG
Sbjct: 97 AIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPG 134
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL-SMASSRQDLVSKACYKNIE 126
G +V+D C G+ + L+ + +QGK+ D +L SMA+ L+++A E
Sbjct: 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMAT----LLARAGVSCCE 156
Query: 127 WVEGDALDLPFSD 139
E D L + SD
Sbjct: 157 LAEEDFLAVSPSD 169
>pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129
G +VLD CGSG + L+ + S G++IG++ K + + + + ++ I++++
Sbjct: 218 GGSVLDPMCGSGTILIELALRRYS-GEIIGIE--KYRKHLIGAEMNALAAGVLDKIKFIQ 274
Query: 130 GDALDLP-FSDCFFDAIT-MGYGLR 152
GDA L + D AI+ + YGL+
Sbjct: 275 GDATQLSQYVDSVDFAISNLPYGLK 299
>pdb|4I78|A Chain A, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
From A/little Yellow-shouldered Bat/guatemala/060/2010
(h17n10)
pdb|4I78|B Chain B, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
From A/little Yellow-shouldered Bat/guatemala/060/2010
(h17n10)
Length = 328
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 26/115 (22%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGD---LSFLLSEQVGSQGKVIGLDFSK----NQLSMASSR 113
A WS K +N D C G+ L LL E G Q +F+K N SM
Sbjct: 77 AEEWSYIKINENAPDDLCFPGNFENLQDLLLEMSGVQ------NFTKVKLFNPQSMTGVT 130
Query: 114 QDLVSKAC--------YKNIEWVEGDALDLPFS----DCFFDAITMGYGLRNVVD 156
+ V + C Y+N+ W++G++ LPF+ + + + + +G+ N D
Sbjct: 131 TNNVDQTCPFEGKPSFYRNLNWIQGNS-GLPFNIEIKNPTSNPLLLLWGIHNTKD 184
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLS 108
++W + G+++LD+C G + + E V + +V+ +D + +LS
Sbjct: 239 MTWLAPQNGEHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLS 284
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K G +VL + SG + +S+ VG +GK+ G++FS L R+ + +NI
Sbjct: 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-----RELVPIVEERRNIVP 126
Query: 128 VEGDALD-------LPFSDCFFDAITMGYGLRNVVD 156
+ GDA +P D F+ + + ++D
Sbjct: 127 ILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILID 162
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112
+ GD VLD+ GSG L+ + +E++G GK +G+D L A +
Sbjct: 119 RPGDKVLDLGTGSGVLA-IAAEKLG--GKALGVDIDPMVLPQAEA 160
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112
+ GD VLD+ GSG L+ + +E++G GK +G+D L A +
Sbjct: 119 RPGDKVLDLGTGSGVLA-IAAEKLG--GKALGVDIDPMVLPQAEA 160
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS----KNQLSMASSRQDL 116
K GD +L + SG + +S+ +G +G++ G++F+ ++ L++ R+++
Sbjct: 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNI 128
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA------SSRQDLVSKACYKNIE 126
VLDV CG+G S +L E+ S V +D S L A ++ K +
Sbjct: 60 VLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 116
Query: 127 WVEGDALDLPFSDCFFDAITMGYGLRNVVD-------KRKALEESFRVLKPGSRISV 176
W+ D D+P D F I +G ++ D R AL+ +++PG + +
Sbjct: 117 WLTLDK-DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA------SSRQDLVSKACYKNIE 126
VLDV CG+G S +L E+ S V +D S L A ++ K +
Sbjct: 61 VLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117
Query: 127 WVEGDALDLPFSDCFFDAITMGYGLRNVVD-------KRKALEESFRVLKPGSRISV 176
W+ D D+P D F I +G ++ D R AL+ +++PG + +
Sbjct: 118 WLTLDK-DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA------SSRQDLVSKACYKNIE 126
VLDV CG+G S +L E+ S V +D S L A ++ K +
Sbjct: 60 VLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 116
Query: 127 WVEGDALDLPFSDCFFDAITMGYGLRNVVD-------KRKALEESFRVLKPGSRISV 176
W+ D D+P D F I +G ++ D R AL+ +++PG + +
Sbjct: 117 WLTLDK-DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 101
A+ W + D VLD+ CG G+ + L+ Q S V+G++
Sbjct: 278 ALEWLDVQPEDRVLDLFCGXGNFTLPLATQAAS---VVGVE 315
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSK 119
AV + D VL++ G G +L+E++ K V ++ K+ A+ ++L
Sbjct: 15 AVESANLTKDDVVLEIGLGKG----ILTEELAKNAKKVYVIEIDKSLEPYANKLKEL--- 67
Query: 120 ACYKNIEWVEGDALDLPFSDCFFDAI--TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177
Y NIE + GDAL + + F+ + + Y + + + +F+++K G ++VL
Sbjct: 68 --YNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPI--------TFKLIKRGFDLAVL 117
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSK 119
AV + D VL++ G G +L+E++ K V ++ K+ A+ ++L
Sbjct: 13 AVESANLTKDDVVLEIGLGKG----ILTEELAKNAKKVYVIEIDKSLEPYANKLKEL--- 65
Query: 120 ACYKNIEWVEGDALDLPFSDCFFDAI--TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177
Y NIE + GDAL + + F+ + + Y + + + +F+++K G ++VL
Sbjct: 66 --YNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPI--------TFKLIKRGFDLAVL 115
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132
VLD C GDL LS V K G++ S QL A + S+ + +GD
Sbjct: 27 VLD-CGAGGDLP-PLSIFVEDGYKTYGIEISDLQLKKAEN----FSRENNFKLNISKGDI 80
Query: 133 LDLPFSDCFFDAITMGYGLRNVVDKRK-----ALEESFRVLKPG 171
LPF D ++ + Y + RK A++E RVLKPG
Sbjct: 81 RKLPFKD---ESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPG 121
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 27/176 (15%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127
K VLD+ C SG L + E + +V G++ A + D V
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKE---NGTRVSGIEAFPEAAEQAKEKLDHV---------- 77
Query: 128 VEGD--ALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 185
V GD D P+ + FD + G L ++ D +E+ +K I ++ P
Sbjct: 78 VLGDIETXDXPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVIL------ASIP 131
Query: 186 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK 241
+ I +V+ P+ +G EY L + F T + + L+ G+S +K
Sbjct: 132 NVSHI------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEXLRXFLKAGYSISK 181
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 101
A+ W + D VLD+ CG G+ + L+ Q S V+G++
Sbjct: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAAS---VVGVE 315
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSK 119
AV + D VL++ G G +L+E++ K V ++ K+ A+ ++L
Sbjct: 42 AVESANLTKDDVVLEIGLGKG----ILTEELAKNAKKVYVIEIDKSLEPYANKLKEL--- 94
Query: 120 ACYKNIEWVEGDALDLPFSDCFFDAI--TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177
Y NIE + GDAL + + F+ + + Y + + + +F+++K G ++VL
Sbjct: 95 --YNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPI--------TFKLIKRGFDLAVL 144
>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex
pdb|3T5V|D Chain D, Sac3:thp1:sem1 Complex
Length = 316
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 87 LSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135
LS + + K I + +N L + ++RQ+++ Y +IE + GDA DL
Sbjct: 214 LSHTLNKKHKPIPFIYLENML-LFNNRQEIIEFCNYYSIEIINGDAADL 261
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 27/132 (20%)
Query: 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE 126
K G+ V+D+ G + L+E + ++GK+ D K ++ +D V + K ++
Sbjct: 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRL---KDFVKRMGIKIVK 313
Query: 127 WVEGDALDLP-------FSDCFFDAITMGYGL---------RNVVDK--------RKALE 162
+ DA P DA G R DK R+ LE
Sbjct: 314 PLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLE 373
Query: 163 ESFRVLKPGSRI 174
+ R++KPG R+
Sbjct: 374 SAARLVKPGGRL 385
>pdb|3R7T|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Campylobacter Jejuni
Length = 419
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 159 KALEESFRVLKPGSRISVLDFNKSTQPFTTA 189
KAL+E RVL G++ S LD + T P+ T+
Sbjct: 209 KALDEDKRVLLEGAQGSXLDIDHGTYPYVTS 239
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL----SMASSRQDLVS 118
K G +VL + SG + +S+ VG +GK+ G++FS L + R++++
Sbjct: 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIP 126
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL----SMASSRQDLVS 118
K G +VL + SG + +S+ VG +GK+ G++FS L + R++++
Sbjct: 79 KPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIP 133
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 124 NIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183
NI G L++P D +D I + DK K +E RVLKP ++ D K
Sbjct: 133 NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVXAITDPXKED 192
Query: 184 QPFTTAIQEWMIDNVVVPVASGYGL 208
++IQ ++D + + GL
Sbjct: 193 GIDKSSIQP-ILDRIKLHDXGSLGL 216
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIE 126
+ G+ +LD+ CG+G L+E++ G +V+G D + + A RQ+ Y ++
Sbjct: 56 QPGEFILDLGCGTGQ----LTEKIAQSGAEVLGTDNAATXIEKA--RQN------YPHLH 103
Query: 127 WVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174
+ DA + D DA+ L V + A+ + LK G R
Sbjct: 104 FDVADARNFRV-DKPLDAVFSNAXLHWVKEPEAAIASIHQALKSGGRF 150
>pdb|4FF7|A Chain A, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
pdb|4FF7|B Chain B, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
Length = 248
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVV---PV- 202
+G G+ ++ + LEE K G + V++ + +++W NVVV PV
Sbjct: 117 LGQGVGVILSIGETLEEK----KAGKTLDVVE--RQLNAVLEEVKDWT--NVVVAYEPVW 168
Query: 203 ASGYGLA---EEYQYLKSSIREFLTGKDLEKLALEI 235
A G GLA E+ Q + +SIR+FL K +K A E+
Sbjct: 169 AIGTGLAATPEDAQDIHASIRKFLASKLGDKAASEL 204
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 202 VASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGL 249
VA+G G A + + +F+ D+EK +GFSR H+ GGL
Sbjct: 336 VAAGDGRAPAVILGGAQMEDFVLDFDMEKK--RLGFSRLPHFTGCGGL 381
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 202 VASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGL 249
VA+G G A + + +F+ D+EK +GFSR H+ GGL
Sbjct: 336 VAAGDGRAPAVILGGAQMEDFVLDFDMEKK--RLGFSRLPHFTGCGGL 381
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 119
+A+ G + G +LDV CG G E+ V+GL SKNQ A+ Q LV+
Sbjct: 55 LALGKLGLQPGXTLLDVGCGWGATXXRAVEKYDV--NVVGLTLSKNQ---ANHVQQLVAN 109
Query: 120 A 120
+
Sbjct: 110 S 110
>pdb|3GU3|A Chain A, Crystal Structure Of The Methyltransferase Bc_2162 In
Complex With S- Adenosyl-L-Homocysteine From Bacillus
Cereus, Northeast Structural Genomics Consortium Target
Bcr20
pdb|3GU3|B Chain B, Crystal Structure Of The Methyltransferase Bc_2162 In
Complex With S- Adenosyl-L-Homocysteine From Bacillus
Cereus, Northeast Structural Genomics Consortium Target
Bcr20
Length = 284
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 46 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 105
+D +SF + +WK +++D CG G L +L + K G+D +
Sbjct: 7 DDYVSFLVNTVWKITKPV--------HIVDYGCGYGYLGLVLXPLLPEGSKYTGIDSGET 58
Query: 106 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 165
L+ A ++L Y + E++EGDA ++ +D + AI + L + L++
Sbjct: 59 LLAEA---RELFRLLPYDS-EFLEGDATEIELNDKYDIAICHAF-LLHXTTPETXLQKXI 113
Query: 166 RVLKPGSRI 174
+K G +I
Sbjct: 114 HSVKKGGKI 122
>pdb|3TKA|A Chain A, Crystal Structure And Solution Saxs Of Methyltransferase
Rsmh From E.Coli
Length = 347
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 159 KALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVP-VASGYGLAEE 211
+AL+ S VL PG R+S++ F+ ++ +M +N P V +G + EE
Sbjct: 255 QALKSSLNVLAPGGRLSIISFHSLEDRI---VKRFMRENSRGPQVPAGLPMTEE 305
>pdb|2GH1|A Chain A, Crystal Structure Of The Putative Sam-Dependent
Methyltransferase Bc2162 From Bacillus Cereus, Northeast
Structural Genomics Target Bcr20.
pdb|2GH1|B Chain B, Crystal Structure Of The Putative Sam-Dependent
Methyltransferase Bc2162 From Bacillus Cereus, Northeast
Structural Genomics Target Bcr20
Length = 301
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 46 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 105
+D +SF + +WK +++D CG G L +L + K G+D +
Sbjct: 24 DDYVSFLVNTVWKITKPV--------HIVDYGCGYGYLGLVLXPLLPEGSKYTGIDSGET 75
Query: 106 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 165
L+ A ++L Y + E++EGDA ++ +D + AI + L + L++
Sbjct: 76 LLAEA---RELFRLLPYDS-EFLEGDATEIELNDKYDIAICHAF-LLHXTTPETXLQKXI 130
Query: 166 RVLKPGSRI 174
+K G +I
Sbjct: 131 HSVKKGGKI 139
>pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|1YPI|B Chain B, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|2YPI|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5-
Angstroms Resolution. Implications For Catalysis
pdb|2YPI|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5-
Angstroms Resolution. Implications For Catalysis
pdb|7TIM|A Chain A, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
pdb|7TIM|B Chain B, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
Length = 247
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 163 ESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVV---PV-ASGYGLA---EEYQYL 215
E+ K G + V++ + +++W NVVV PV A G GLA E+ Q +
Sbjct: 128 ETLEEKKAGKTLDVVE--RQLNAVLEEVKDWT--NVVVAYEPVWAIGTGLAATPEDAQDI 183
Query: 216 KSSIREFLTGKDLEKLALEI 235
+SIR+FL K +K A E+
Sbjct: 184 HASIRKFLASKLGDKAASEL 203
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase: The
Role Of Histidine-95
pdb|3YPI|B Chain B, Electrophilic Catalysis In Triosephosphase Isomerase: The
Role Of Histidine-95
Length = 247
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 163 ESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVV---PV-ASGYGLA---EEYQYL 215
E+ K G + V++ + +++W NVVV PV A G GLA E+ Q +
Sbjct: 128 ETLEEKKAGKTLDVVE--RQLNAVLEEVKDWT--NVVVAYEPVWAIGTGLAATPEDAQDI 183
Query: 216 KSSIREFLTGKDLEKLALEI 235
+SIR+FL K +K A E+
Sbjct: 184 HASIRKFLASKLGDKAASEL 203
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 26/76 (34%)
Query: 177 LDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG----------- 225
+++N S FT+A+ W +NV AE+Y L+ +I E L
Sbjct: 422 INWNGSYSLFTSALDPWYRENV----------AEDYPELRDAISELLQREAGLQEIVQLV 471
Query: 226 -----KDLEKLALEIG 236
+D E+L +E+G
Sbjct: 472 GPDALQDAERLVIEVG 487
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 26/76 (34%)
Query: 177 LDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG----------- 225
+++N S FT+A+ W +NV AE+Y L+ +I E L
Sbjct: 422 INWNGSYSLFTSALDPWYRENV----------AEDYPELRDAISELLQREAGLQEIVQLV 471
Query: 226 -----KDLEKLALEIG 236
+D E+L +E+G
Sbjct: 472 GPDALQDAERLVIEVG 487
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,173,763
Number of Sequences: 62578
Number of extensions: 280207
Number of successful extensions: 855
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 62
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)