Query 025144
Match_columns 257
No_of_seqs 184 out of 2207
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 100.0 5.7E-38 1.2E-42 240.3 23.9 227 27-257 9-237 (238)
2 PF01209 Ubie_methyltran: ubiE 100.0 1.4E-39 3.1E-44 252.2 11.7 227 27-257 5-233 (233)
3 PLN02233 ubiquinone biosynthes 100.0 1E-35 2.2E-40 235.9 26.0 233 25-257 29-261 (261)
4 KOG1540 Ubiquinone biosynthesi 100.0 1.2E-32 2.5E-37 206.9 21.7 238 20-257 48-295 (296)
5 TIGR02752 MenG_heptapren 2-hep 100.0 7E-31 1.5E-35 206.0 25.1 226 28-257 4-231 (231)
6 PRK05785 hypothetical protein; 100.0 3.9E-29 8.5E-34 194.0 21.5 215 27-257 7-224 (226)
7 PRK00216 ubiE ubiquinone/menaq 100.0 4.1E-26 8.9E-31 180.0 25.3 229 27-257 9-238 (239)
8 TIGR01934 MenG_MenH_UbiE ubiqu 99.9 2.5E-25 5.5E-30 173.7 23.6 222 31-257 1-223 (223)
9 PLN02244 tocopherol O-methyltr 99.9 5.8E-24 1.3E-28 174.9 19.3 201 28-247 58-281 (340)
10 PLN02396 hexaprenyldihydroxybe 99.9 1.2E-22 2.7E-27 164.3 17.9 159 69-245 131-290 (322)
11 PLN02490 MPBQ/MSBQ methyltrans 99.9 2.9E-22 6.2E-27 162.6 18.7 181 32-246 77-258 (340)
12 PLN02232 ubiquinone biosynthes 99.9 1.4E-22 3E-27 149.3 14.6 160 98-257 1-160 (160)
13 PRK10258 biotin biosynthesis p 99.9 1.1E-21 2.4E-26 155.7 19.1 177 28-239 6-182 (251)
14 PTZ00098 phosphoethanolamine N 99.9 1E-21 2.3E-26 156.1 18.8 161 58-246 41-204 (263)
15 PRK14103 trans-aconitate 2-met 99.9 1.4E-21 3E-26 155.3 18.3 164 60-243 20-183 (255)
16 PRK11036 putative S-adenosyl-L 99.9 5.9E-22 1.3E-26 157.4 16.0 198 33-244 4-207 (255)
17 PRK15451 tRNA cmo(5)U34 methyl 99.9 2.3E-21 5.1E-26 153.0 17.7 170 67-244 54-230 (247)
18 TIGR00740 methyltransferase, p 99.9 7.9E-22 1.7E-26 155.3 14.7 181 68-257 52-239 (239)
19 KOG4300 Predicted methyltransf 99.9 5.3E-21 1.2E-25 139.8 14.8 170 64-254 71-242 (252)
20 COG2227 UbiG 2-polyprenyl-3-me 99.9 1.7E-21 3.8E-26 147.0 11.4 160 68-246 58-217 (243)
21 PLN02336 phosphoethanolamine N 99.9 1.7E-20 3.6E-25 161.9 18.7 161 59-246 256-416 (475)
22 PF13489 Methyltransf_23: Meth 99.9 4.7E-21 1E-25 142.0 11.8 151 57-241 9-160 (161)
23 PF13847 Methyltransf_31: Meth 99.9 3.3E-20 7.1E-25 136.0 15.1 109 68-180 2-112 (152)
24 PRK08317 hypothetical protein; 99.9 6.8E-20 1.5E-24 144.6 17.6 168 56-245 6-177 (241)
25 PRK11873 arsM arsenite S-adeno 99.9 1.1E-19 2.4E-24 145.9 18.6 157 66-244 74-230 (272)
26 KOG1270 Methyltransferases [Co 99.8 1.1E-20 2.3E-25 143.6 10.4 155 70-245 90-250 (282)
27 PRK15068 tRNA mo(5)U34 methylt 99.8 9.1E-20 2E-24 148.6 16.4 162 62-246 115-276 (322)
28 PRK01683 trans-aconitate 2-met 99.8 3.6E-19 7.9E-24 141.9 19.2 112 57-178 19-130 (258)
29 PRK06202 hypothetical protein; 99.8 4.5E-19 9.8E-24 139.0 18.5 174 54-246 45-224 (232)
30 TIGR00452 methyltransferase, p 99.8 3.2E-19 7E-24 143.8 17.3 159 64-245 116-274 (314)
31 PF02353 CMAS: Mycolic acid cy 99.8 3.4E-19 7.5E-24 141.4 16.7 194 28-246 7-219 (273)
32 PF08241 Methyltransf_11: Meth 99.8 3.9E-20 8.4E-25 124.6 9.8 95 74-176 1-95 (95)
33 COG2230 Cfa Cyclopropane fatty 99.8 3.8E-19 8.2E-24 139.1 16.6 194 26-245 15-224 (283)
34 TIGR02072 BioC biotin biosynth 99.8 4.9E-19 1.1E-23 139.7 17.4 142 69-243 34-175 (240)
35 PF12847 Methyltransf_18: Meth 99.8 1.4E-19 3E-24 125.8 11.0 106 69-178 1-111 (112)
36 TIGR02716 C20_methyl_CrtF C-20 99.8 2.5E-18 5.5E-23 140.2 20.0 163 58-242 138-304 (306)
37 smart00828 PKS_MT Methyltransf 99.8 3.1E-19 6.8E-24 139.3 14.0 147 72-248 2-148 (224)
38 TIGR02021 BchM-ChlM magnesium 99.8 6.7E-19 1.4E-23 136.9 15.6 197 29-251 3-213 (219)
39 PRK11207 tellurite resistance 99.8 3.1E-19 6.7E-24 136.1 13.0 146 61-243 22-169 (197)
40 PRK00107 gidB 16S rRNA methylt 99.8 1.6E-17 3.5E-22 124.7 20.0 143 53-246 25-171 (187)
41 COG4106 Tam Trans-aconitate me 99.8 1.3E-18 2.8E-23 128.4 13.7 168 60-246 21-188 (257)
42 TIGR00477 tehB tellurite resis 99.8 1.6E-18 3.4E-23 132.0 12.8 143 63-243 24-168 (195)
43 PRK05134 bifunctional 3-demeth 99.8 2E-17 4.4E-22 129.9 18.9 195 31-244 8-205 (233)
44 PLN02585 magnesium protoporphy 99.8 5E-18 1.1E-22 137.2 15.0 194 28-245 90-300 (315)
45 PF07021 MetW: Methionine bios 99.8 5.3E-19 1.1E-23 129.9 7.9 157 67-248 11-171 (193)
46 PF08242 Methyltransf_12: Meth 99.8 1.2E-19 2.6E-24 123.2 2.6 97 74-174 1-99 (99)
47 PRK12335 tellurite resistance 99.8 7.7E-18 1.7E-22 135.9 12.9 139 68-244 119-259 (287)
48 TIGR00138 gidB 16S rRNA methyl 99.8 2.4E-16 5.2E-21 118.2 18.5 100 69-177 42-141 (181)
49 PF03848 TehB: Tellurite resis 99.8 2.8E-17 6.2E-22 122.5 12.8 147 63-247 24-172 (192)
50 TIGR03438 probable methyltrans 99.8 9.1E-17 2E-21 130.3 16.9 109 68-178 62-177 (301)
51 TIGR01983 UbiG ubiquinone bios 99.7 2.7E-16 5.8E-21 122.8 17.9 159 69-245 45-204 (224)
52 PF13649 Methyltransf_25: Meth 99.7 5.8E-18 1.3E-22 115.3 6.8 96 73-172 1-101 (101)
53 PRK07580 Mg-protoporphyrin IX 99.7 1.4E-16 3.1E-21 124.8 15.2 156 67-248 61-218 (230)
54 PRK06922 hypothetical protein; 99.7 5.1E-17 1.1E-21 139.9 13.6 113 64-181 413-540 (677)
55 PRK04266 fibrillarin; Provisio 99.7 5.6E-16 1.2E-20 119.9 17.2 105 64-177 67-175 (226)
56 PRK08287 cobalt-precorrin-6Y C 99.7 5.9E-16 1.3E-20 117.4 16.7 141 55-245 17-157 (187)
57 PF05401 NodS: Nodulation prot 99.7 1E-15 2.2E-20 112.9 17.0 146 61-248 35-183 (201)
58 PF08003 Methyltransf_9: Prote 99.7 2.9E-16 6.4E-21 123.0 14.9 160 64-246 110-269 (315)
59 TIGR03587 Pse_Me-ase pseudamin 99.7 4.4E-16 9.5E-21 119.0 14.8 104 67-182 41-146 (204)
60 TIGR00537 hemK_rel_arch HemK-r 99.7 2.1E-15 4.6E-20 113.5 17.8 131 65-245 15-166 (179)
61 PLN02336 phosphoethanolamine N 99.7 1.6E-16 3.5E-21 137.3 13.2 152 59-244 27-182 (475)
62 PRK11705 cyclopropane fatty ac 99.7 8.7E-16 1.9E-20 128.0 16.8 112 60-182 158-271 (383)
63 TIGR02081 metW methionine bios 99.7 3.1E-16 6.7E-21 119.6 12.9 156 68-246 12-169 (194)
64 COG4976 Predicted methyltransf 99.7 5.2E-17 1.1E-21 120.9 7.7 181 26-245 82-266 (287)
65 PRK13944 protein-L-isoaspartat 99.7 7.5E-16 1.6E-20 118.2 14.0 114 57-178 60-173 (205)
66 PTZ00146 fibrillarin; Provisio 99.7 2.4E-15 5.2E-20 118.8 16.8 106 65-177 128-236 (293)
67 PLN03075 nicotianamine synthas 99.7 2.6E-15 5.7E-20 119.0 17.0 108 68-178 122-233 (296)
68 TIGR03840 TMPT_Se_Te thiopurin 99.7 1.6E-15 3.4E-20 116.5 15.2 111 68-181 33-155 (213)
69 TIGR02469 CbiT precorrin-6Y C5 99.7 1.4E-15 3.1E-20 107.5 14.0 114 58-178 8-122 (124)
70 PRK00377 cbiT cobalt-precorrin 99.7 3.4E-15 7.3E-20 114.1 16.6 116 57-177 28-144 (198)
71 PRK00121 trmB tRNA (guanine-N( 99.7 4.4E-16 9.4E-21 119.2 11.4 106 69-178 40-156 (202)
72 TIGR03534 RF_mod_PrmC protein- 99.7 4.6E-15 1E-19 117.9 16.8 147 58-252 77-249 (251)
73 PRK14966 unknown domain/N5-glu 99.7 9.9E-15 2.1E-19 120.6 18.6 154 55-257 239-418 (423)
74 PRK13942 protein-L-isoaspartat 99.7 2.3E-15 4.9E-20 116.1 13.6 113 56-177 63-175 (212)
75 smart00138 MeTrc Methyltransfe 99.7 1.2E-15 2.6E-20 121.2 12.3 111 68-178 98-242 (264)
76 PRK09328 N5-glutamine S-adenos 99.7 1.2E-14 2.7E-19 116.9 18.0 156 55-257 94-275 (275)
77 PRK14968 putative methyltransf 99.6 2.2E-14 4.7E-19 108.9 17.4 145 67-257 21-188 (188)
78 PF05175 MTS: Methyltransferas 99.6 2.4E-15 5.2E-20 112.1 11.6 115 59-178 21-140 (170)
79 TIGR00080 pimt protein-L-isoas 99.6 6.5E-15 1.4E-19 114.0 14.4 112 57-177 65-176 (215)
80 PRK15001 SAM-dependent 23S rib 99.6 3.7E-15 7.9E-20 123.0 13.5 124 53-178 212-340 (378)
81 TIGR00536 hemK_fam HemK family 99.6 2.1E-14 4.5E-19 115.7 17.4 157 55-257 99-282 (284)
82 KOG2361 Predicted methyltransf 99.6 9.8E-16 2.1E-20 115.2 8.7 173 54-243 54-236 (264)
83 PF12147 Methyltransf_20: Puta 99.6 2.9E-14 6.2E-19 110.8 16.9 225 13-257 76-311 (311)
84 PRK11088 rrmA 23S rRNA methylt 99.6 3.7E-15 8E-20 119.5 12.6 98 69-181 85-184 (272)
85 PRK13255 thiopurine S-methyltr 99.6 1.3E-14 2.9E-19 111.8 14.2 113 66-181 34-158 (218)
86 TIGR00091 tRNA (guanine-N(7)-) 99.6 4.3E-15 9.2E-20 113.1 10.3 106 69-178 16-132 (194)
87 PF00891 Methyltransf_2: O-met 99.6 3.6E-14 7.7E-19 112.0 15.8 113 59-185 90-206 (241)
88 TIGR03533 L3_gln_methyl protei 99.6 9.3E-14 2E-18 111.6 18.3 106 68-177 120-250 (284)
89 TIGR01177 conserved hypothetic 99.6 2.5E-14 5.5E-19 117.6 15.2 117 56-178 169-294 (329)
90 PRK14121 tRNA (guanine-N(7)-)- 99.6 1.8E-14 4E-19 118.4 13.8 149 26-178 69-235 (390)
91 KOG1271 Methyltransferases [Ge 99.6 1.9E-14 4.2E-19 103.6 12.1 133 67-244 64-205 (227)
92 PRK00517 prmA ribosomal protei 99.6 3.4E-14 7.3E-19 112.4 14.7 132 67-256 117-248 (250)
93 PRK09489 rsmC 16S ribosomal RN 99.6 2.1E-14 4.5E-19 117.8 13.6 117 55-178 182-303 (342)
94 KOG1541 Predicted protein carb 99.6 1.5E-14 3.3E-19 107.3 11.0 132 34-178 15-160 (270)
95 COG2242 CobL Precorrin-6B meth 99.6 1.8E-13 3.9E-18 100.2 16.2 117 55-179 20-136 (187)
96 COG4123 Predicted O-methyltran 99.6 5.4E-14 1.2E-18 108.4 13.4 115 61-178 36-170 (248)
97 PF05891 Methyltransf_PK: AdoM 99.6 4.1E-14 9E-19 106.2 12.4 146 69-245 55-202 (218)
98 PRK11188 rrmJ 23S rRNA methylt 99.6 4.5E-14 9.8E-19 108.4 12.8 102 67-182 49-169 (209)
99 PRK01544 bifunctional N5-gluta 99.6 2E-13 4.3E-18 117.9 17.8 140 70-255 139-304 (506)
100 PRK14967 putative methyltransf 99.6 2.8E-13 6.1E-18 105.5 16.6 108 66-180 33-161 (223)
101 PRK11805 N5-glutamine S-adenos 99.6 4.6E-13 1E-17 108.6 18.1 103 71-177 135-262 (307)
102 COG2519 GCD14 tRNA(1-methylade 99.6 1.2E-13 2.5E-18 105.6 13.6 112 60-179 85-196 (256)
103 PF06080 DUF938: Protein of un 99.6 4.2E-13 9E-18 100.4 16.0 164 72-254 28-202 (204)
104 PRK14901 16S rRNA methyltransf 99.6 2.1E-13 4.6E-18 116.1 16.5 124 55-181 238-387 (434)
105 PRK07402 precorrin-6B methylas 99.5 2.3E-13 4.9E-18 103.9 14.4 119 54-180 25-144 (196)
106 PF01135 PCMT: Protein-L-isoas 99.5 5.1E-14 1.1E-18 107.4 10.1 113 57-178 60-172 (209)
107 PF13659 Methyltransf_26: Meth 99.5 3.1E-14 6.7E-19 99.6 8.3 106 70-179 1-116 (117)
108 TIGR00406 prmA ribosomal prote 99.5 1.9E-13 4.2E-18 110.2 13.8 103 68-179 158-260 (288)
109 PRK00312 pcm protein-L-isoaspa 99.5 3.4E-13 7.4E-18 104.3 13.8 111 57-179 66-176 (212)
110 PF05148 Methyltransf_8: Hypot 99.5 8.6E-13 1.9E-17 98.1 15.0 162 28-252 27-192 (219)
111 COG2518 Pcm Protein-L-isoaspar 99.5 2.4E-13 5.3E-18 101.7 12.2 111 57-179 60-170 (209)
112 KOG3010 Methyltransferase [Gen 99.5 8.6E-14 1.9E-18 104.9 9.7 103 72-180 36-139 (261)
113 COG2264 PrmA Ribosomal protein 99.5 6.2E-13 1.3E-17 105.3 15.0 139 68-257 161-299 (300)
114 TIGR03704 PrmC_rel_meth putati 99.5 1.8E-12 4E-17 102.3 17.3 116 55-177 71-215 (251)
115 COG2890 HemK Methylase of poly 99.5 2.4E-12 5.2E-17 102.9 18.1 137 72-256 113-275 (280)
116 PF08704 GCD14: tRNA methyltra 99.5 4E-13 8.7E-18 104.5 12.9 113 59-178 30-146 (247)
117 PF06325 PrmA: Ribosomal prote 99.5 7.3E-13 1.6E-17 105.9 14.7 135 67-256 159-293 (295)
118 PF05219 DREV: DREV methyltran 99.5 3.5E-13 7.6E-18 103.6 11.5 95 69-178 94-188 (265)
119 PRK13943 protein-L-isoaspartat 99.5 4E-13 8.6E-18 109.0 12.4 112 57-177 68-179 (322)
120 PF05724 TPMT: Thiopurine S-me 99.5 4.9E-13 1.1E-17 102.9 12.1 153 57-244 26-190 (218)
121 PRK14903 16S rRNA methyltransf 99.5 8.9E-13 1.9E-17 111.9 14.7 132 58-192 226-380 (431)
122 PHA03411 putative methyltransf 99.5 1.5E-12 3.3E-17 101.9 14.7 126 68-238 63-208 (279)
123 PRK00811 spermidine synthase; 99.5 1.1E-12 2.3E-17 105.5 13.8 109 68-177 75-190 (283)
124 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.3E-12 2.9E-17 104.1 14.1 121 60-183 62-204 (264)
125 KOG2940 Predicted methyltransf 99.5 1.8E-13 3.8E-18 102.3 7.8 154 70-243 73-226 (325)
126 PRK13256 thiopurine S-methyltr 99.5 1.4E-12 3E-17 100.2 12.9 113 66-181 40-166 (226)
127 COG2813 RsmC 16S RNA G1207 met 99.5 1.3E-12 2.9E-17 102.8 12.8 127 46-178 135-266 (300)
128 TIGR00563 rsmB ribosomal RNA s 99.5 2.4E-12 5.3E-17 109.5 15.0 127 56-185 225-375 (426)
129 PRK14904 16S rRNA methyltransf 99.5 4E-12 8.7E-17 108.7 16.0 123 59-185 240-384 (445)
130 PRK01581 speE spermidine synth 99.4 6.5E-12 1.4E-16 102.1 16.0 152 68-257 149-313 (374)
131 TIGR00438 rrmJ cell division p 99.4 2.7E-12 5.8E-17 97.4 13.0 102 64-179 27-147 (188)
132 PRK10901 16S rRNA methyltransf 99.4 5.1E-12 1.1E-16 107.5 15.4 121 56-181 231-375 (427)
133 cd02440 AdoMet_MTases S-adenos 99.4 2.1E-12 4.6E-17 87.8 10.5 101 72-177 1-103 (107)
134 PRK04457 spermidine synthase; 99.4 2.4E-12 5.2E-17 102.2 12.2 112 67-181 64-180 (262)
135 PF03291 Pox_MCEL: mRNA cappin 99.4 1.7E-12 3.7E-17 105.8 11.1 110 69-180 62-188 (331)
136 PRK14902 16S rRNA methyltransf 99.4 8.5E-12 1.8E-16 106.8 15.3 120 58-181 239-382 (444)
137 PLN02781 Probable caffeoyl-CoA 99.4 3.1E-12 6.8E-17 99.9 11.6 117 59-180 58-180 (234)
138 KOG3045 Predicted RNA methylas 99.4 1.8E-11 3.9E-16 93.3 14.1 153 28-244 135-291 (325)
139 smart00650 rADc Ribosomal RNA 99.4 9.9E-12 2.1E-16 92.6 11.3 107 60-177 4-112 (169)
140 PRK03612 spermidine synthase; 99.4 1.1E-11 2.3E-16 107.7 12.8 110 68-178 296-415 (521)
141 TIGR00417 speE spermidine synt 99.3 9.6E-11 2.1E-15 93.8 16.3 108 69-177 72-185 (270)
142 PLN02366 spermidine synthase 99.3 1E-10 2.2E-15 94.6 16.3 109 68-177 90-205 (308)
143 PF01596 Methyltransf_3: O-met 99.3 4.4E-11 9.5E-16 91.1 12.9 109 67-180 43-157 (205)
144 KOG1975 mRNA cap methyltransfe 99.3 3.1E-11 6.6E-16 94.9 11.0 121 56-178 104-237 (389)
145 COG4122 Predicted O-methyltran 99.3 3.4E-11 7.3E-16 91.6 10.4 118 59-181 49-169 (219)
146 PLN02476 O-methyltransferase 99.3 4.1E-11 8.9E-16 94.8 11.0 118 59-181 108-231 (278)
147 PRK13168 rumA 23S rRNA m(5)U19 99.3 1.2E-10 2.7E-15 99.6 14.8 115 54-178 282-400 (443)
148 PF02390 Methyltransf_4: Putat 99.3 4.9E-11 1.1E-15 90.4 10.1 104 71-178 19-133 (195)
149 PHA03412 putative methyltransf 99.2 5.6E-11 1.2E-15 91.1 9.6 96 69-173 49-158 (241)
150 PLN02672 methionine S-methyltr 99.2 2.7E-10 5.9E-15 104.8 14.9 80 70-150 119-212 (1082)
151 COG3963 Phospholipid N-methylt 99.2 4.1E-10 8.8E-15 80.4 11.7 120 54-181 33-159 (194)
152 PRK11783 rlmL 23S rRNA m(2)G24 99.2 2.5E-10 5.3E-15 102.7 13.1 107 69-178 538-656 (702)
153 KOG1500 Protein arginine N-met 99.2 3.2E-10 6.9E-15 89.7 11.9 155 15-175 123-279 (517)
154 KOG3178 Hydroxyindole-O-methyl 99.2 4.9E-10 1.1E-14 89.8 13.0 153 70-247 178-333 (342)
155 COG0220 Predicted S-adenosylme 99.2 2.7E-10 6E-15 87.7 11.0 105 70-178 49-164 (227)
156 TIGR03439 methyl_EasF probable 99.2 2.2E-09 4.8E-14 87.0 16.5 107 67-177 74-196 (319)
157 KOG2899 Predicted methyltransf 99.2 4.3E-10 9.3E-15 85.1 11.4 106 69-177 58-208 (288)
158 KOG3191 Predicted N6-DNA-methy 99.2 6.1E-09 1.3E-13 75.5 16.5 130 70-245 44-194 (209)
159 PRK15128 23S rRNA m(5)C1962 me 99.2 6.3E-10 1.4E-14 93.2 13.4 108 69-179 220-340 (396)
160 PRK11727 23S rRNA mA1618 methy 99.2 3.8E-10 8.3E-15 91.4 11.5 83 69-154 114-202 (321)
161 KOG1331 Predicted methyltransf 99.2 1.4E-10 3E-15 90.1 7.9 131 28-180 11-145 (293)
162 PRK03522 rumB 23S rRNA methylu 99.2 4E-10 8.7E-15 92.2 11.2 110 59-177 163-273 (315)
163 PRK10909 rsmD 16S rRNA m(2)G96 99.2 1.2E-09 2.5E-14 83.0 12.8 118 55-178 38-159 (199)
164 PLN02589 caffeoyl-CoA O-methyl 99.2 2.5E-10 5.4E-15 89.3 9.3 117 59-180 69-192 (247)
165 COG2263 Predicted RNA methylas 99.1 4.1E-09 8.8E-14 77.3 14.2 80 66-154 42-121 (198)
166 TIGR00479 rumA 23S rRNA (uraci 99.1 1.7E-09 3.7E-14 92.5 14.5 112 57-177 280-395 (431)
167 PF10294 Methyltransf_16: Puta 99.1 9.8E-10 2.1E-14 82.0 11.4 113 67-181 43-159 (173)
168 KOG1499 Protein arginine N-met 99.1 3.8E-10 8.2E-15 90.3 9.5 118 53-175 44-164 (346)
169 COG2521 Predicted archaeal met 99.1 5.1E-10 1.1E-14 84.3 9.2 159 54-250 117-283 (287)
170 COG1041 Predicted DNA modifica 99.1 2.9E-09 6.3E-14 85.8 13.8 120 53-178 181-310 (347)
171 KOG2904 Predicted methyltransf 99.1 6.7E-09 1.4E-13 80.2 15.1 123 54-179 130-286 (328)
172 PF01170 UPF0020: Putative RNA 99.1 6.9E-09 1.5E-13 77.8 13.5 114 54-170 13-143 (179)
173 PF11968 DUF3321: Putative met 99.1 5.5E-09 1.2E-13 78.5 12.5 120 71-246 53-183 (219)
174 PRK14896 ksgA 16S ribosomal RN 99.1 1.9E-09 4E-14 85.8 10.5 89 54-152 14-102 (258)
175 COG0421 SpeE Spermidine syntha 99.0 1.3E-08 2.8E-13 81.1 14.8 110 66-177 74-189 (282)
176 PRK00274 ksgA 16S ribosomal RN 99.0 1.7E-09 3.6E-14 86.7 9.7 87 56-151 29-115 (272)
177 PRK10611 chemotaxis methyltran 99.0 1.7E-09 3.7E-14 86.4 9.3 109 70-178 116-262 (287)
178 PRK00536 speE spermidine synth 99.0 9.4E-09 2E-13 80.9 13.0 100 68-178 71-171 (262)
179 PRK11933 yebU rRNA (cytosine-C 99.0 1.1E-08 2.5E-13 87.2 14.4 117 66-185 110-249 (470)
180 PF01739 CheR: CheR methyltran 99.0 4.6E-09 9.9E-14 79.5 10.4 109 69-177 31-174 (196)
181 PF07942 N2227: N2227-like pro 99.0 3.6E-08 7.9E-13 77.6 15.7 147 69-244 56-242 (270)
182 PF05185 PRMT5: PRMT5 arginine 99.0 1.1E-08 2.4E-13 87.0 13.5 103 70-175 187-294 (448)
183 PTZ00338 dimethyladenosine tra 99.0 3.5E-09 7.5E-14 85.3 9.9 91 55-152 22-112 (294)
184 PF02527 GidB: rRNA small subu 99.0 2.2E-08 4.7E-13 75.0 13.0 116 54-178 28-148 (184)
185 PF04672 Methyltransf_19: S-ad 99.0 2.6E-08 5.6E-13 77.9 13.8 161 57-241 56-233 (267)
186 PLN02823 spermine synthase 99.0 1.8E-08 3.9E-13 82.5 13.3 107 69-177 103-219 (336)
187 TIGR00755 ksgA dimethyladenosi 99.0 1.7E-08 3.8E-13 80.1 12.6 88 55-152 15-105 (253)
188 KOG1661 Protein-L-isoaspartate 98.9 8.7E-09 1.9E-13 76.5 9.4 106 67-178 80-193 (237)
189 PRK04148 hypothetical protein; 98.9 5.1E-08 1.1E-12 68.4 12.2 107 59-183 6-114 (134)
190 TIGR02085 meth_trns_rumB 23S r 98.9 1.5E-08 3.3E-13 84.8 11.1 108 62-178 226-334 (374)
191 PRK01544 bifunctional N5-gluta 98.9 1.2E-08 2.6E-13 88.5 10.0 106 69-178 347-462 (506)
192 COG1352 CheR Methylase of chem 98.9 8.1E-08 1.8E-12 75.8 13.5 109 70-178 97-241 (268)
193 TIGR00095 RNA methyltransferas 98.9 5.4E-08 1.2E-12 73.6 12.0 105 68-177 48-158 (189)
194 PF09243 Rsm22: Mitochondrial 98.9 7.2E-08 1.6E-12 77.2 13.1 111 69-184 33-145 (274)
195 PF01564 Spermine_synth: Sperm 98.9 9.8E-08 2.1E-12 75.2 13.3 109 69-178 76-191 (246)
196 PRK00050 16S rRNA m(4)C1402 me 98.8 1.2E-08 2.6E-13 81.7 7.8 100 57-161 7-112 (296)
197 COG1092 Predicted SAM-dependen 98.8 5.2E-08 1.1E-12 80.9 11.4 121 54-181 205-339 (393)
198 KOG2915 tRNA(1-methyladenosine 98.8 4.9E-07 1.1E-11 70.0 15.4 108 59-173 95-204 (314)
199 PF03602 Cons_hypoth95: Conser 98.8 1.5E-08 3.3E-13 76.0 7.1 120 55-178 26-153 (183)
200 PF03059 NAS: Nicotianamine sy 98.8 2.5E-07 5.3E-12 73.2 13.8 106 70-177 121-229 (276)
201 KOG3987 Uncharacterized conser 98.8 1.3E-09 2.9E-14 80.5 0.6 93 70-177 113-206 (288)
202 TIGR00478 tly hemolysin TlyA f 98.8 1.2E-07 2.5E-12 73.5 10.9 91 68-177 74-170 (228)
203 KOG3420 Predicted RNA methylas 98.8 2.2E-08 4.8E-13 69.9 6.1 88 61-154 40-127 (185)
204 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.8 6.9E-09 1.5E-13 81.2 3.9 161 68-257 55-256 (256)
205 PRK04338 N(2),N(2)-dimethylgua 98.7 9.8E-08 2.1E-12 79.8 10.7 100 70-177 58-157 (382)
206 PF01269 Fibrillarin: Fibrilla 98.7 9.9E-07 2.1E-11 66.8 14.9 107 65-178 69-178 (229)
207 COG0357 GidB Predicted S-adeno 98.7 6.1E-07 1.3E-11 68.4 14.0 116 53-176 46-166 (215)
208 PF02384 N6_Mtase: N-6 DNA Met 98.7 2.1E-07 4.6E-12 76.3 12.4 150 29-179 4-184 (311)
209 COG0144 Sun tRNA and rRNA cyto 98.7 8.1E-07 1.8E-11 73.8 15.4 134 54-190 141-300 (355)
210 COG0030 KsgA Dimethyladenosine 98.7 1.3E-07 2.9E-12 73.9 10.0 89 55-151 16-105 (259)
211 KOG0820 Ribosomal RNA adenine 98.7 1.5E-07 3.3E-12 72.8 9.8 85 59-150 48-132 (315)
212 KOG1663 O-methyltransferase [S 98.7 9.3E-07 2E-11 67.0 13.6 116 61-181 65-186 (237)
213 PF02475 Met_10: Met-10+ like- 98.7 1.4E-07 3E-12 71.5 9.4 100 67-174 99-198 (200)
214 KOG3201 Uncharacterized conser 98.7 1.4E-08 3.1E-13 72.1 3.7 113 67-180 27-142 (201)
215 PRK05031 tRNA (uracil-5-)-meth 98.7 8.6E-07 1.9E-11 74.0 14.4 110 57-178 195-320 (362)
216 KOG1269 SAM-dependent methyltr 98.7 6.8E-08 1.5E-12 79.6 7.5 111 66-180 107-217 (364)
217 PF04816 DUF633: Family of unk 98.7 8.3E-07 1.8E-11 67.7 12.8 125 73-245 1-125 (205)
218 TIGR02143 trmA_only tRNA (urac 98.7 3.1E-07 6.7E-12 76.3 11.2 112 55-178 184-311 (353)
219 COG0742 N6-adenine-specific me 98.6 7.9E-07 1.7E-11 65.9 11.6 121 54-178 26-154 (187)
220 COG4262 Predicted spermidine s 98.6 9.1E-07 2E-11 71.3 12.4 152 68-257 288-451 (508)
221 PF03141 Methyltransf_29: Puta 98.6 3.9E-08 8.4E-13 82.6 3.9 94 71-179 119-220 (506)
222 COG4798 Predicted methyltransf 98.6 5.7E-07 1.2E-11 66.1 9.4 154 61-243 40-204 (238)
223 PF10672 Methyltrans_SAM: S-ad 98.6 6.7E-07 1.4E-11 71.5 9.8 120 54-179 111-239 (286)
224 PF08123 DOT1: Histone methyla 98.5 8.2E-07 1.8E-11 67.7 9.5 114 61-176 34-156 (205)
225 PRK11760 putative 23S rRNA C24 98.5 1.6E-05 3.4E-10 64.5 16.3 88 67-171 209-296 (357)
226 COG0500 SmtA SAM-dependent met 98.5 1E-05 2.2E-10 59.7 14.5 106 73-183 52-160 (257)
227 COG2265 TrmA SAM-dependent met 98.5 4.3E-06 9.3E-11 70.9 13.1 117 53-178 277-396 (432)
228 PRK11783 rlmL 23S rRNA m(2)G24 98.5 8.3E-06 1.8E-10 73.9 15.4 123 54-178 174-347 (702)
229 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.5 1.9E-06 4.2E-11 69.3 10.2 125 54-181 70-222 (283)
230 COG2520 Predicted methyltransf 98.5 9E-06 1.9E-10 66.3 14.0 107 68-182 187-293 (341)
231 PF00398 RrnaAD: Ribosomal RNA 98.4 4.1E-06 8.9E-11 66.9 11.6 102 54-166 15-119 (262)
232 COG0293 FtsJ 23S rRNA methylas 98.4 8.3E-06 1.8E-10 61.5 12.2 103 67-183 43-164 (205)
233 PF01728 FtsJ: FtsJ-like methy 98.4 3.6E-07 7.7E-12 68.9 4.1 99 69-181 23-142 (181)
234 COG3897 Predicted methyltransf 98.4 3.1E-06 6.7E-11 62.5 8.6 118 58-184 68-185 (218)
235 COG4301 Uncharacterized conser 98.4 3E-05 6.4E-10 59.5 13.9 201 55-257 64-321 (321)
236 TIGR00308 TRM1 tRNA(guanine-26 98.3 6.8E-06 1.5E-10 68.5 10.7 102 70-178 45-147 (374)
237 KOG1709 Guanidinoacetate methy 98.3 1.5E-05 3.2E-10 59.9 11.0 106 68-179 100-207 (271)
238 PF09445 Methyltransf_15: RNA 98.3 1.1E-06 2.4E-11 64.1 4.7 74 72-150 2-78 (163)
239 PF13679 Methyltransf_32: Meth 98.3 1.1E-05 2.4E-10 58.1 9.9 97 67-166 23-122 (141)
240 COG1889 NOP1 Fibrillarin-like 98.3 0.0001 2.2E-09 54.9 14.4 106 64-177 71-179 (231)
241 COG0116 Predicted N6-adenine-s 98.2 3.7E-05 8E-10 63.3 12.3 123 54-178 176-344 (381)
242 PF01861 DUF43: Protein of unk 98.2 0.00064 1.4E-08 52.5 18.2 106 67-179 42-149 (243)
243 COG2384 Predicted SAM-dependen 98.2 0.00011 2.4E-09 55.6 13.7 129 69-245 16-144 (226)
244 TIGR00006 S-adenosyl-methyltra 98.2 1E-05 2.2E-10 65.2 8.5 102 55-161 6-114 (305)
245 COG4076 Predicted RNA methylas 98.2 1.1E-05 2.4E-10 59.2 7.7 98 71-176 34-133 (252)
246 KOG2798 Putative trehalase [Ca 98.2 2.6E-05 5.7E-10 61.9 10.3 189 28-244 102-337 (369)
247 PF05958 tRNA_U5-meth_tr: tRNA 98.2 8.5E-06 1.9E-10 67.8 8.1 75 54-135 182-256 (352)
248 TIGR02987 met_A_Alw26 type II 98.2 3.4E-05 7.4E-10 67.9 12.1 81 69-152 31-123 (524)
249 PF13578 Methyltransf_24: Meth 98.1 7.4E-07 1.6E-11 60.9 1.2 101 74-178 1-105 (106)
250 KOG2352 Predicted spermine/spe 98.1 4.6E-05 1E-09 64.2 11.6 102 72-179 51-162 (482)
251 PF07091 FmrO: Ribosomal RNA m 98.1 1.6E-05 3.6E-10 61.5 8.1 82 68-155 104-185 (251)
252 KOG4589 Cell division protein 98.1 8.4E-05 1.8E-09 54.6 10.5 105 67-185 67-191 (232)
253 PLN02668 indole-3-acetate carb 98.0 0.00041 8.9E-09 57.8 14.4 174 70-246 64-311 (386)
254 KOG1122 tRNA and rRNA cytosine 98.0 0.00015 3.3E-09 59.9 11.5 114 64-181 236-374 (460)
255 KOG2730 Methylase [General fun 98.0 2.7E-05 5.7E-10 58.7 6.2 99 69-172 94-196 (263)
256 COG4627 Uncharacterized protei 97.9 7.2E-06 1.6E-10 58.2 2.8 47 135-181 41-89 (185)
257 PRK10742 putative methyltransf 97.9 8.9E-05 1.9E-09 57.7 8.7 92 60-154 77-177 (250)
258 KOG3115 Methyltransferase-like 97.9 4.7E-05 1E-09 56.7 6.6 109 69-178 60-183 (249)
259 PF06962 rRNA_methylase: Putat 97.9 0.00022 4.7E-09 50.6 9.6 84 96-183 1-97 (140)
260 TIGR01444 fkbM_fam methyltrans 97.9 5.6E-05 1.2E-09 54.5 6.9 59 72-134 1-59 (143)
261 KOG2187 tRNA uracil-5-methyltr 97.9 2.4E-05 5.2E-10 66.1 5.3 75 54-134 368-442 (534)
262 PF03141 Methyltransf_29: Puta 97.7 0.00049 1.1E-08 58.5 10.7 132 70-257 366-506 (506)
263 COG1189 Predicted rRNA methyla 97.7 0.00084 1.8E-08 51.6 10.8 97 67-177 77-177 (245)
264 PF04445 SAM_MT: Putative SAM- 97.7 0.00029 6.2E-09 54.5 8.0 90 61-153 65-163 (234)
265 PF03492 Methyltransf_7: SAM d 97.7 0.0037 8E-08 51.7 15.0 177 68-245 15-254 (334)
266 COG0275 Predicted S-adenosylme 97.6 0.00057 1.2E-08 54.4 8.8 96 54-153 8-108 (314)
267 PF04989 CmcI: Cephalosporin h 97.6 0.00083 1.8E-08 50.9 9.0 105 69-178 32-147 (206)
268 KOG1596 Fibrillarin and relate 97.5 0.00049 1.1E-08 52.8 7.4 103 64-178 151-261 (317)
269 PF01795 Methyltransf_5: MraW 97.5 0.00028 6.2E-09 57.0 6.5 91 57-152 8-104 (310)
270 PF05971 Methyltransf_10: Prot 97.5 0.0018 3.9E-08 52.1 10.5 83 70-155 103-191 (299)
271 KOG2793 Putative N2,N2-dimethy 97.5 0.0015 3.3E-08 51.0 9.8 108 69-179 86-200 (248)
272 KOG1099 SAM-dependent methyltr 97.4 0.00094 2E-08 50.9 7.5 95 70-178 42-163 (294)
273 COG5459 Predicted rRNA methyla 97.4 0.0011 2.4E-08 53.7 8.3 116 69-185 113-232 (484)
274 COG1064 AdhP Zn-dependent alco 97.3 0.0042 9.2E-08 50.9 11.1 98 65-180 162-261 (339)
275 KOG2198 tRNA cytosine-5-methyl 97.3 0.0084 1.8E-07 49.2 12.0 117 64-183 150-301 (375)
276 PF11312 DUF3115: Protein of u 97.1 0.003 6.4E-08 50.8 8.1 110 71-180 88-244 (315)
277 TIGR00027 mthyl_TIGR00027 meth 97.1 0.061 1.3E-06 42.9 15.4 167 59-242 72-248 (260)
278 KOG4058 Uncharacterized conser 97.0 0.0084 1.8E-07 42.6 8.3 114 61-183 64-177 (199)
279 PRK09424 pntA NAD(P) transhydr 96.9 0.017 3.8E-07 50.3 11.3 101 67-179 162-286 (509)
280 COG0286 HsdM Type I restrictio 96.8 0.047 1E-06 47.8 13.5 148 29-178 144-326 (489)
281 PF02005 TRM: N2,N2-dimethylgu 96.7 0.0053 1.1E-07 51.6 6.9 105 69-178 49-154 (377)
282 KOG0822 Protein kinase inhibit 96.7 0.02 4.3E-07 49.2 10.1 102 70-175 368-475 (649)
283 KOG1562 Spermidine synthase [A 96.7 0.0062 1.3E-07 48.4 6.6 112 66-178 118-236 (337)
284 PF10354 DUF2431: Domain of un 96.7 0.059 1.3E-06 39.8 11.5 134 76-250 3-158 (166)
285 PRK01747 mnmC bifunctional tRN 96.6 0.024 5.2E-07 51.7 10.3 108 68-175 56-203 (662)
286 PF02636 Methyltransf_28: Puta 96.5 0.023 5.1E-07 45.1 8.9 47 70-116 19-72 (252)
287 COG3510 CmcI Cephalosporin hyd 96.4 0.034 7.5E-07 41.4 8.4 107 69-183 69-185 (237)
288 PHA01634 hypothetical protein 96.4 0.03 6.6E-07 38.8 7.5 46 69-116 28-73 (156)
289 KOG2920 Predicted methyltransf 96.3 0.0034 7.4E-08 49.7 3.1 108 68-177 115-233 (282)
290 KOG1501 Arginine N-methyltrans 96.3 0.029 6.3E-07 47.1 8.1 95 71-169 68-165 (636)
291 cd08283 FDH_like_1 Glutathione 96.2 0.075 1.6E-06 45.1 11.0 104 64-178 179-306 (386)
292 PF05711 TylF: Macrocin-O-meth 96.1 0.078 1.7E-06 41.8 9.7 124 55-181 60-215 (248)
293 PF07757 AdoMet_MTase: Predict 96.1 0.023 4.9E-07 38.1 5.5 32 68-102 57-88 (112)
294 PRK13699 putative methylase; P 96.0 0.03 6.5E-07 43.7 7.0 51 126-176 3-70 (227)
295 PF06859 Bin3: Bicoid-interact 96.0 0.0024 5.3E-08 43.0 0.7 37 141-177 1-43 (110)
296 KOG0024 Sorbitol dehydrogenase 95.9 0.19 4.1E-06 40.8 11.1 105 65-184 165-279 (354)
297 KOG2651 rRNA adenine N-6-methy 95.8 0.03 6.6E-07 46.2 6.3 53 59-113 143-195 (476)
298 COG1063 Tdh Threonine dehydrog 95.8 0.19 4E-06 42.1 11.2 100 68-183 167-274 (350)
299 PF03269 DUF268: Caenorhabditi 95.8 0.017 3.7E-07 41.8 4.2 102 70-183 2-116 (177)
300 COG1867 TRM1 N2,N2-dimethylgua 95.7 0.047 1E-06 45.0 6.8 101 70-178 53-154 (380)
301 COG1565 Uncharacterized conser 95.6 0.077 1.7E-06 43.7 7.7 51 66-116 74-131 (370)
302 KOG2539 Mitochondrial/chloropl 95.5 0.099 2.1E-06 44.5 8.3 112 69-182 200-319 (491)
303 TIGR00561 pntA NAD(P) transhyd 95.4 0.08 1.7E-06 46.2 7.9 96 68-175 162-281 (511)
304 cd00315 Cyt_C5_DNA_methylase C 95.4 0.071 1.5E-06 43.0 7.0 72 72-154 2-75 (275)
305 COG0686 Ald Alanine dehydrogen 95.2 0.063 1.4E-06 43.3 5.9 97 70-175 168-265 (371)
306 KOG3924 Putative protein methy 95.1 0.25 5.4E-06 41.2 9.2 122 58-182 181-312 (419)
307 PF03514 GRAS: GRAS domain fam 95.0 1.4 3E-05 37.3 13.8 119 58-178 99-243 (374)
308 PF02254 TrkA_N: TrkA-N domain 95.0 0.47 1E-05 32.5 9.4 87 78-177 4-95 (116)
309 cd08254 hydroxyacyl_CoA_DH 6-h 95.0 0.49 1.1E-05 39.0 11.1 98 65-179 161-264 (338)
310 PRK09880 L-idonate 5-dehydroge 94.9 0.21 4.5E-06 41.6 8.8 97 66-179 166-267 (343)
311 PTZ00357 methyltransferase; Pr 94.7 0.94 2E-05 40.9 12.1 101 72-173 703-830 (1072)
312 PRK11524 putative methyltransf 94.6 0.17 3.7E-06 41.0 7.3 46 67-115 206-251 (284)
313 COG3129 Predicted SAM-dependen 94.4 0.089 1.9E-06 40.5 4.7 83 69-154 78-166 (292)
314 KOG1253 tRNA methyltransferase 94.3 0.049 1.1E-06 46.5 3.6 105 68-178 108-216 (525)
315 PF11599 AviRa: RRNA methyltra 94.3 0.15 3.3E-06 38.9 5.8 110 68-177 50-213 (246)
316 PF00107 ADH_zinc_N: Zinc-bind 94.3 0.25 5.3E-06 34.6 6.8 86 79-181 1-92 (130)
317 PF05430 Methyltransf_30: S-ad 94.3 0.21 4.5E-06 34.9 6.1 87 124-256 32-122 (124)
318 COG3315 O-Methyltransferase in 94.2 1.7 3.7E-05 35.5 12.1 106 70-178 93-209 (297)
319 PF01555 N6_N4_Mtase: DNA meth 94.0 0.12 2.6E-06 40.0 5.1 52 57-112 180-231 (231)
320 cd08237 ribitol-5-phosphate_DH 93.8 0.61 1.3E-05 38.8 9.2 97 66-179 160-257 (341)
321 cd05188 MDR Medium chain reduc 93.4 1.9 4.1E-05 34.0 11.2 96 67-179 132-233 (271)
322 TIGR02822 adh_fam_2 zinc-bindi 93.4 1.9 4.2E-05 35.6 11.5 94 65-179 161-255 (329)
323 PRK13699 putative methylase; P 93.3 0.25 5.4E-06 38.6 5.7 48 67-117 161-208 (227)
324 PRK11524 putative methyltransf 93.1 0.094 2E-06 42.5 3.2 54 124-177 8-79 (284)
325 PF00145 DNA_methylase: C-5 cy 93.1 2.2 4.8E-05 35.0 11.5 70 72-154 2-74 (335)
326 TIGR03451 mycoS_dep_FDH mycoth 93.0 1.4 3E-05 36.9 10.2 98 65-179 172-277 (358)
327 KOG1227 Putative methyltransfe 92.6 0.095 2.1E-06 42.0 2.4 94 70-172 195-289 (351)
328 KOG2352 Predicted spermine/spe 92.5 0.44 9.6E-06 40.9 6.4 108 69-180 295-418 (482)
329 cd08230 glucose_DH Glucose deh 92.4 1 2.2E-05 37.6 8.6 96 67-180 170-271 (355)
330 cd08281 liver_ADH_like1 Zinc-d 92.2 1.9 4E-05 36.4 9.9 98 65-179 187-291 (371)
331 KOG2671 Putative RNA methylase 92.1 0.22 4.8E-06 40.8 4.0 115 60-178 199-354 (421)
332 COG1568 Predicted methyltransf 92.1 1.3 2.8E-05 35.4 8.0 104 68-178 151-260 (354)
333 cd08239 THR_DH_like L-threonin 91.9 3 6.4E-05 34.5 10.8 98 65-179 159-263 (339)
334 PF04072 LCM: Leucine carboxyl 91.5 1.1 2.4E-05 33.7 7.1 106 56-163 64-181 (183)
335 PLN03154 putative allyl alcoho 91.5 4.4 9.5E-05 33.8 11.3 97 65-178 154-258 (348)
336 PF03686 UPF0146: Uncharacteri 91.4 1.1 2.4E-05 31.2 6.3 92 69-181 13-105 (127)
337 PF11899 DUF3419: Protein of u 91.4 0.39 8.4E-06 40.6 4.9 60 123-182 275-338 (380)
338 COG1255 Uncharacterized protei 91.2 2.1 4.5E-05 29.3 7.1 91 70-181 14-105 (129)
339 cd08232 idonate-5-DH L-idonate 91.1 4.2 9.1E-05 33.6 10.9 93 69-178 165-262 (339)
340 TIGR03366 HpnZ_proposed putati 91.1 2.8 6E-05 33.8 9.5 97 66-179 117-219 (280)
341 TIGR02825 B4_12hDH leukotriene 91.0 6 0.00013 32.5 11.6 98 63-178 132-237 (325)
342 cd00401 AdoHcyase S-adenosyl-L 90.8 2.9 6.3E-05 35.8 9.6 89 68-179 200-290 (413)
343 PRK06940 short chain dehydroge 90.4 5.2 0.00011 32.1 10.5 100 72-177 4-124 (275)
344 TIGR00518 alaDH alanine dehydr 90.1 0.64 1.4E-05 39.2 5.1 99 69-176 166-265 (370)
345 cd08294 leukotriene_B4_DH_like 89.8 6.9 0.00015 32.0 11.1 97 64-178 138-241 (329)
346 PRK07819 3-hydroxybutyryl-CoA 89.7 2.6 5.6E-05 34.2 8.2 97 71-175 6-118 (286)
347 KOG0821 Predicted ribosomal RN 89.7 1.5 3.3E-05 33.7 6.2 73 57-135 38-110 (326)
348 COG1748 LYS9 Saccharopine dehy 89.7 1.5 3.2E-05 37.1 6.8 71 71-150 2-77 (389)
349 cd08245 CAD Cinnamyl alcohol d 89.6 6.8 0.00015 32.1 10.9 97 65-178 158-256 (330)
350 TIGR00497 hsdM type I restrict 89.5 13 0.00027 33.0 12.9 108 69-177 217-354 (501)
351 PF11899 DUF3419: Protein of u 89.4 1.3 2.8E-05 37.4 6.3 53 61-116 27-79 (380)
352 PLN02740 Alcohol dehydrogenase 89.3 6 0.00013 33.5 10.4 98 65-179 194-301 (381)
353 PRK10309 galactitol-1-phosphat 89.0 6.3 0.00014 32.7 10.3 98 65-179 156-261 (347)
354 PF10237 N6-adenineMlase: Prob 88.9 7.6 0.00016 28.6 9.6 96 68-178 24-123 (162)
355 cd08293 PTGR2 Prostaglandin re 88.9 7.9 0.00017 32.0 10.8 96 66-178 149-254 (345)
356 cd08261 Zn_ADH7 Alcohol dehydr 88.7 8.1 0.00018 31.8 10.7 98 64-178 154-258 (337)
357 TIGR01202 bchC 2-desacetyl-2-h 88.6 3.5 7.5E-05 33.8 8.4 87 69-179 144-232 (308)
358 cd08234 threonine_DH_like L-th 88.2 7 0.00015 32.1 10.0 98 64-178 154-257 (334)
359 COG0604 Qor NADPH:quinone redu 88.1 11 0.00023 31.3 10.9 102 64-180 137-243 (326)
360 PF05206 TRM13: Methyltransfer 87.9 2 4.3E-05 34.3 6.2 109 67-180 16-142 (259)
361 KOG1098 Putative SAM-dependent 87.9 0.96 2.1E-05 40.1 4.7 96 66-175 41-155 (780)
362 PRK05786 fabG 3-ketoacyl-(acyl 87.7 11 0.00024 29.1 10.8 103 70-178 5-135 (238)
363 cd05278 FDH_like Formaldehyde 87.7 7.5 0.00016 32.1 10.0 97 65-178 163-267 (347)
364 cd08255 2-desacetyl-2-hydroxye 87.7 6.8 0.00015 31.2 9.4 97 64-178 92-190 (277)
365 PF05050 Methyltransf_21: Meth 87.6 1.4 3E-05 32.1 5.0 39 75-113 1-42 (167)
366 PF12692 Methyltransf_17: S-ad 87.6 3 6.5E-05 30.0 6.2 106 59-176 19-132 (160)
367 PF02737 3HCDH_N: 3-hydroxyacy 87.6 6.3 0.00014 29.5 8.5 99 72-178 1-114 (180)
368 PLN02586 probable cinnamyl alc 87.5 6 0.00013 33.2 9.3 97 67-179 181-279 (360)
369 cd05285 sorbitol_DH Sorbitol d 87.4 10 0.00022 31.4 10.6 99 63-178 156-265 (343)
370 PLN02827 Alcohol dehydrogenase 87.2 9.8 0.00021 32.2 10.4 98 65-179 189-296 (378)
371 PF14740 DUF4471: Domain of un 87.1 1.9 4.1E-05 34.9 5.6 34 140-178 221-254 (289)
372 TIGR02818 adh_III_F_hyde S-(hy 87.1 12 0.00026 31.5 10.8 99 64-179 180-288 (368)
373 cd08285 NADP_ADH NADP(H)-depen 86.9 11 0.00023 31.4 10.5 98 65-179 162-267 (351)
374 cd08295 double_bond_reductase_ 86.7 15 0.00032 30.4 11.1 98 64-178 146-251 (338)
375 cd08236 sugar_DH NAD(P)-depend 86.4 15 0.00032 30.4 11.0 98 64-178 154-258 (343)
376 TIGR00675 dcm DNA-methyltransf 86.4 2.1 4.6E-05 35.3 5.8 70 73-154 1-72 (315)
377 cd08242 MDR_like Medium chain 86.3 14 0.00031 30.1 10.8 94 64-177 150-244 (319)
378 COG2933 Predicted SAM-dependen 86.2 4.5 9.8E-05 32.2 7.0 87 67-170 209-295 (358)
379 PF10017 Methyltransf_33: Hist 86.1 1.5 3.3E-05 30.7 4.2 32 222-253 95-126 (127)
380 KOG2078 tRNA modification enzy 85.8 0.64 1.4E-05 39.3 2.5 64 67-134 247-310 (495)
381 PRK07576 short chain dehydroge 85.8 12 0.00027 29.6 9.9 76 69-149 8-94 (264)
382 PRK08265 short chain dehydroge 85.5 13 0.00029 29.3 9.9 73 70-150 6-89 (261)
383 PRK10669 putative cation:proto 85.0 16 0.00035 32.8 11.2 92 71-177 418-514 (558)
384 KOG0023 Alcohol dehydrogenase, 84.9 12 0.00026 30.8 9.0 99 66-181 178-282 (360)
385 PF01488 Shikimate_DH: Shikima 84.8 3.1 6.7E-05 29.5 5.4 79 67-154 9-88 (135)
386 PRK03659 glutathione-regulated 84.8 8.3 0.00018 35.0 9.2 93 71-178 401-498 (601)
387 PF07652 Flavi_DEAD: Flaviviru 84.8 11 0.00024 27.2 7.9 48 70-117 5-56 (148)
388 TIGR03201 dearomat_had 6-hydro 84.7 16 0.00034 30.4 10.4 46 65-112 162-208 (349)
389 KOG4174 Uncharacterized conser 84.6 18 0.0004 28.6 9.6 110 66-177 53-189 (282)
390 PRK08293 3-hydroxybutyryl-CoA 84.4 3.7 8E-05 33.3 6.3 97 71-174 4-116 (287)
391 PRK07109 short chain dehydroge 84.4 19 0.00041 29.9 10.6 77 70-151 8-95 (334)
392 KOG2782 Putative SAM dependent 84.1 0.98 2.1E-05 34.7 2.6 101 57-161 31-140 (303)
393 PF02153 PDH: Prephenate dehyd 84.1 3.5 7.5E-05 32.9 5.9 93 84-195 2-94 (258)
394 KOG1209 1-Acyl dihydroxyaceton 84.0 9 0.00019 29.6 7.5 72 70-150 7-90 (289)
395 PF06557 DUF1122: Protein of u 83.9 2.4 5.2E-05 30.8 4.3 62 158-248 66-127 (170)
396 TIGR02819 fdhA_non_GSH formald 83.9 26 0.00056 29.9 11.5 104 65-180 181-301 (393)
397 PRK07806 short chain dehydroge 83.9 18 0.0004 28.1 10.8 103 70-177 6-133 (248)
398 cd08300 alcohol_DH_class_III c 83.4 20 0.00043 30.1 10.6 98 65-179 182-289 (368)
399 PRK09496 trkA potassium transp 83.4 3.9 8.5E-05 35.4 6.5 69 70-148 231-304 (453)
400 cd08301 alcohol_DH_plants Plan 83.4 12 0.00025 31.5 9.1 100 64-180 182-291 (369)
401 cd08231 MDR_TM0436_like Hypoth 83.2 25 0.00055 29.3 11.6 94 68-178 176-280 (361)
402 PRK09260 3-hydroxybutyryl-CoA 82.9 12 0.00027 30.2 8.8 97 72-176 3-115 (288)
403 PRK12939 short chain dehydroge 82.8 13 0.00028 28.9 8.8 77 70-151 7-94 (250)
404 PRK10458 DNA cytosine methylas 82.6 15 0.00033 32.2 9.5 78 70-154 88-182 (467)
405 PF02558 ApbA: Ketopantoate re 82.5 3.8 8.2E-05 29.4 5.1 98 73-177 1-100 (151)
406 COG0270 Dcm Site-specific DNA 82.4 5.4 0.00012 33.1 6.6 74 71-154 4-80 (328)
407 PRK08324 short chain dehydroge 82.3 18 0.00039 33.4 10.5 104 69-178 421-557 (681)
408 PRK08267 short chain dehydroge 82.1 17 0.00036 28.7 9.2 73 72-151 3-87 (260)
409 PRK15057 UDP-glucose 6-dehydro 81.8 25 0.00053 30.1 10.4 39 72-113 2-41 (388)
410 PRK07417 arogenate dehydrogena 81.7 8.7 0.00019 31.0 7.4 82 72-172 2-85 (279)
411 KOG2360 Proliferation-associat 81.5 3.8 8.1E-05 34.4 5.1 71 62-135 206-276 (413)
412 PRK05708 2-dehydropantoate 2-r 81.2 29 0.00062 28.5 10.5 96 72-177 4-103 (305)
413 TIGR00936 ahcY adenosylhomocys 81.1 17 0.00036 31.3 9.0 90 68-180 193-284 (406)
414 PRK06181 short chain dehydroge 81.1 17 0.00037 28.7 8.9 76 71-151 2-88 (263)
415 cd08233 butanediol_DH_like (2R 80.7 31 0.00068 28.6 11.2 99 64-179 167-273 (351)
416 PRK07530 3-hydroxybutyryl-CoA 80.6 18 0.0004 29.3 9.0 96 71-175 5-116 (292)
417 cd08238 sorbose_phosphate_red 80.4 34 0.00074 29.3 11.0 107 65-177 171-287 (410)
418 cd08298 CAD2 Cinnamyl alcohol 80.3 31 0.00066 28.2 11.2 95 63-178 161-256 (329)
419 PLN02514 cinnamyl-alcohol dehy 80.2 23 0.00049 29.7 9.7 96 68-179 179-276 (357)
420 PRK03562 glutathione-regulated 80.1 22 0.00048 32.4 10.1 66 71-148 401-471 (621)
421 cd08277 liver_alcohol_DH_like 79.9 34 0.00074 28.7 10.7 98 65-179 180-287 (365)
422 PRK06701 short chain dehydroge 79.6 29 0.00063 28.1 9.9 105 69-178 45-181 (290)
423 cd08278 benzyl_alcohol_DH Benz 79.4 36 0.00078 28.5 10.7 97 65-178 182-285 (365)
424 PRK06035 3-hydroxyacyl-CoA deh 79.2 14 0.00031 29.9 8.0 96 71-174 4-117 (291)
425 cd08296 CAD_like Cinnamyl alco 78.9 35 0.00076 28.1 10.8 98 65-179 159-260 (333)
426 PRK07502 cyclohexadienyl dehyd 78.7 17 0.00037 29.7 8.4 89 71-175 7-97 (307)
427 PRK05476 S-adenosyl-L-homocyst 78.7 12 0.00027 32.2 7.6 89 69-180 211-301 (425)
428 PF03446 NAD_binding_2: NAD bi 78.4 6.5 0.00014 28.8 5.3 86 72-175 3-91 (163)
429 PF02719 Polysacc_synt_2: Poly 78.2 9.7 0.00021 31.0 6.5 77 77-155 4-91 (293)
430 PLN02545 3-hydroxybutyryl-CoA 78.0 19 0.00042 29.2 8.4 96 71-175 5-116 (295)
431 PRK09072 short chain dehydroge 77.9 32 0.0007 27.1 9.8 76 70-151 5-90 (263)
432 cd05213 NAD_bind_Glutamyl_tRNA 77.8 34 0.00074 28.1 9.8 100 68-184 176-277 (311)
433 PLN02178 cinnamyl-alcohol dehy 77.4 14 0.0003 31.3 7.6 95 68-179 177-274 (375)
434 COG1086 Predicted nucleoside-d 77.4 25 0.00054 31.4 9.1 84 69-155 249-339 (588)
435 PF12242 Eno-Rase_NADH_b: NAD( 77.0 15 0.00033 23.2 5.6 37 67-103 36-73 (78)
436 PLN02494 adenosylhomocysteinas 76.9 16 0.00034 32.0 7.7 90 68-179 252-342 (477)
437 COG0287 TyrA Prephenate dehydr 76.7 14 0.00031 29.9 7.1 106 71-194 4-112 (279)
438 cd08263 Zn_ADH10 Alcohol dehyd 76.6 37 0.0008 28.4 10.0 96 66-178 184-287 (367)
439 COG5379 BtaA S-adenosylmethion 76.3 7.4 0.00016 31.5 5.2 48 66-116 60-107 (414)
440 PRK06223 malate dehydrogenase; 76.2 41 0.0009 27.5 9.9 36 71-107 3-39 (307)
441 COG0541 Ffh Signal recognition 76.1 15 0.00032 31.6 7.2 107 68-181 98-224 (451)
442 PRK00066 ldh L-lactate dehydro 75.6 41 0.00088 27.8 9.7 105 69-178 5-122 (315)
443 PF01262 AlaDh_PNT_C: Alanine 75.4 0.67 1.4E-05 34.3 -0.7 43 69-113 19-62 (168)
444 cd01842 SGNH_hydrolase_like_5 75.4 6.8 0.00015 29.2 4.5 44 137-180 46-101 (183)
445 TIGR02279 PaaC-3OHAcCoADH 3-hy 75.3 19 0.00041 31.9 8.1 97 70-174 5-116 (503)
446 cd08286 FDH_like_ADH2 formalde 75.3 45 0.00098 27.5 10.5 97 65-178 162-266 (345)
447 COG4017 Uncharacterized protei 75.2 17 0.00036 27.6 6.5 70 67-154 42-112 (254)
448 PRK11064 wecC UDP-N-acetyl-D-m 75.1 54 0.0012 28.3 10.8 38 71-111 4-43 (415)
449 TIGR01771 L-LDH-NAD L-lactate 75.1 27 0.00059 28.6 8.5 98 76-178 2-113 (299)
450 PRK08306 dipicolinate synthase 74.7 41 0.00088 27.5 9.4 89 69-177 151-240 (296)
451 COG5379 BtaA S-adenosylmethion 74.7 9.4 0.0002 31.0 5.4 75 98-180 290-368 (414)
452 cd05291 HicDH_like L-2-hydroxy 74.4 47 0.001 27.2 10.0 77 72-152 2-79 (306)
453 COG0569 TrkA K+ transport syst 73.7 21 0.00045 27.8 7.2 67 72-148 2-73 (225)
454 cd08241 QOR1 Quinone oxidoredu 73.4 46 0.001 26.7 10.8 96 65-178 135-238 (323)
455 PF11253 DUF3052: Protein of u 73.2 29 0.00063 24.3 8.7 73 140-249 44-116 (127)
456 PRK08268 3-hydroxy-acyl-CoA de 73.0 33 0.00071 30.5 9.0 97 70-175 7-119 (507)
457 KOG2912 Predicted DNA methylas 72.9 13 0.00028 30.6 5.8 76 74-152 107-189 (419)
458 PRK05808 3-hydroxybutyryl-CoA 72.9 22 0.00048 28.7 7.5 94 72-174 5-114 (282)
459 PF00056 Ldh_1_N: lactate/mala 72.7 32 0.00069 24.5 10.8 101 72-177 2-117 (141)
460 PRK06522 2-dehydropantoate 2-r 72.5 50 0.0011 26.7 10.0 96 72-177 2-99 (304)
461 cd05281 TDH Threonine dehydrog 72.4 54 0.0012 27.0 10.1 94 67-178 161-262 (341)
462 PRK11730 fadB multifunctional 72.2 37 0.0008 31.7 9.5 97 71-175 314-425 (715)
463 cd08279 Zn_ADH_class_III Class 72.0 57 0.0012 27.2 10.5 98 65-179 178-283 (363)
464 PRK06079 enoyl-(acyl carrier p 71.9 46 0.001 26.1 10.4 76 69-151 6-93 (252)
465 PF06016 Reovirus_L2: Reovirus 71.8 4.3 9.2E-05 39.4 3.4 102 69-182 822-930 (1289)
466 cd08265 Zn_ADH3 Alcohol dehydr 71.7 61 0.0013 27.4 10.2 99 65-178 199-307 (384)
467 TIGR02437 FadB fatty oxidation 71.4 43 0.00093 31.2 9.7 98 71-176 314-426 (714)
468 PLN00203 glutamyl-tRNA reducta 70.8 50 0.0011 29.5 9.5 106 69-183 265-372 (519)
469 PF07279 DUF1442: Protein of u 70.7 47 0.001 25.7 10.5 113 57-177 29-147 (218)
470 PRK06130 3-hydroxybutyryl-CoA 70.6 42 0.00091 27.5 8.7 40 71-113 5-46 (311)
471 cd05279 Zn_ADH1 Liver alcohol 70.5 58 0.0013 27.3 9.8 102 64-179 178-286 (365)
472 PRK05872 short chain dehydroge 70.4 56 0.0012 26.4 9.5 77 69-151 8-95 (296)
473 cd05293 LDH_1 A subgroup of L- 70.4 60 0.0013 26.8 10.8 103 69-178 2-120 (312)
474 COG2961 ComJ Protein involved 70.3 53 0.0012 26.1 11.2 135 29-178 55-195 (279)
475 COG0275 Predicted S-adenosylme 70.1 6.2 0.00013 32.1 3.5 34 155-188 221-254 (314)
476 cd05283 CAD1 Cinnamyl alcohol 70.0 61 0.0013 26.7 10.1 96 66-178 166-263 (337)
477 TIGR00692 tdh L-threonine 3-de 69.6 62 0.0014 26.7 10.3 96 67-179 159-262 (340)
478 PF06460 NSP13: Coronavirus NS 69.4 27 0.00059 27.9 6.7 97 65-177 57-168 (299)
479 KOG2918 Carboxymethyl transfer 69.0 64 0.0014 26.6 12.9 44 67-110 85-129 (335)
480 COG0863 DNA modification methy 68.8 28 0.0006 28.2 7.3 48 66-116 219-266 (302)
481 PRK06172 short chain dehydroge 68.8 35 0.00075 26.7 7.7 77 70-151 7-94 (253)
482 PRK05854 short chain dehydroge 68.6 45 0.00098 27.3 8.5 80 69-151 13-103 (313)
483 PRK09496 trkA potassium transp 68.6 50 0.0011 28.6 9.2 91 72-176 2-97 (453)
484 PRK08594 enoyl-(acyl carrier p 68.5 57 0.0012 25.7 10.1 76 69-150 6-96 (257)
485 PRK09291 short chain dehydroge 68.0 38 0.00083 26.5 7.8 75 71-150 3-82 (257)
486 TIGR00006 S-adenosyl-methyltra 67.9 5 0.00011 32.8 2.7 31 156-186 218-248 (305)
487 COG4353 Uncharacterized conser 67.8 11 0.00024 27.4 4.0 63 157-248 72-134 (192)
488 PRK11154 fadJ multifunctional 67.8 55 0.0012 30.5 9.6 97 71-175 310-422 (708)
489 PRK12921 2-dehydropantoate 2-r 67.6 65 0.0014 26.1 10.1 96 72-176 2-100 (305)
490 KOG1201 Hydroxysteroid 17-beta 67.4 67 0.0014 26.3 8.7 77 69-153 37-126 (300)
491 PRK07533 enoyl-(acyl carrier p 67.3 60 0.0013 25.6 10.9 78 69-151 9-98 (258)
492 PRK05396 tdh L-threonine 3-deh 67.3 70 0.0015 26.3 9.6 95 68-179 162-264 (341)
493 PLN03209 translocon at the inn 67.3 91 0.002 28.3 10.4 84 67-151 77-169 (576)
494 PLN00112 malate dehydrogenase 67.2 79 0.0017 27.6 9.8 107 68-178 98-226 (444)
495 PRK05855 short chain dehydroge 67.1 58 0.0013 29.1 9.6 78 70-152 315-403 (582)
496 TIGR02441 fa_ox_alpha_mit fatt 67.0 40 0.00086 31.6 8.5 98 71-176 336-448 (737)
497 PTZ00117 malate dehydrogenase; 67.0 72 0.0016 26.4 9.5 39 69-108 4-43 (319)
498 cd08291 ETR_like_1 2-enoyl thi 66.9 69 0.0015 26.2 9.6 92 70-179 143-243 (324)
499 cd08260 Zn_ADH6 Alcohol dehydr 66.7 72 0.0016 26.3 9.9 97 65-178 161-264 (345)
500 PRK06124 gluconate 5-dehydroge 66.7 42 0.0009 26.3 7.8 78 69-151 10-98 (256)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=5.7e-38 Score=240.30 Aligned_cols=227 Identities=41% Similarity=0.698 Sum_probs=207.0
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 106 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 106 (257)
..+.+++.|++++..||.+++..+++.+..|++.+...+...++.+|||+|||||..+..+++..+ ..+|+++|+|+.|
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~M 87 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESM 87 (238)
T ss_pred cHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHH
Confidence 357899999999999999999999999999999999999888999999999999999999999975 7799999999999
Q ss_pred HHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchh
Q 025144 107 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186 (257)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 186 (257)
++.++++....+. .+++++++|++++|+++++||+|++.+.|++++|+++.|++++|+|||||.+++.++..+..+.
T Consensus 88 L~~a~~k~~~~~~---~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 88 LEVAREKLKKKGV---QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred HHHHHHHhhccCc---cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence 9999999876543 3499999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHhhhhhhhhccCC--chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 187 TTAIQEWMIDNVVVPVASGYG--LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
......++..+...|..+... ....|+++..++..+.+.+++..+++++||+.+.+..+.+|+..++.+.|
T Consensus 165 ~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 165 LRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred hHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 776666666665666666654 47779999999999999999999999999999999999999999998876
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=100.00 E-value=1.4e-39 Score=252.19 Aligned_cols=227 Identities=41% Similarity=0.730 Sum_probs=105.6
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 106 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 106 (257)
.++.++++||+++..||.++...+++.+..|++.+.......++.+|||+|||||..+..+++..++..+|+++|+|+.|
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp --------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 35679999999999999999999999999999999998888889999999999999999999887777899999999999
Q ss_pred HHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchh
Q 025144 107 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186 (257)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 186 (257)
++.++++.+..+. .++.++++|++++|+++++||+|++.+.+++++|+.+.+++++|+|||||.+++.+++.+..+.
T Consensus 85 L~~a~~k~~~~~~---~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~ 161 (233)
T PF01209_consen 85 LEVARKKLKREGL---QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPL 161 (233)
T ss_dssp HHHHHHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHH
T ss_pred HHHHHHHHHhhCC---CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCch
Confidence 9999999876543 4899999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHhhhhhhhhccC-C-chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 187 TTAIQEWMIDNVVVPVASGY-G-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
...+..++... ..|..+.. . ....|.++..++..+.+.+++.++++++||+.++...+.+|+..+++|.|
T Consensus 162 ~~~~~~~y~~~-ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 162 LRALYKFYFKY-ILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp HHHHHHH------------------------------------------------------------------
T ss_pred hhceeeeeecc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 77777666654 34444433 2 33569999999999999999999999999999999999999999999987
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=100.00 E-value=1e-35 Score=235.91 Aligned_cols=233 Identities=80% Similarity=1.348 Sum_probs=200.2
Q ss_pred cCCchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCCh
Q 025144 25 VRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 104 (257)
Q Consensus 25 ~~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 104 (257)
++..+.++++|+++|..||..+...+.+....|++.+.......++.+|||+|||+|..+..+++.+++..+|+++|+|+
T Consensus 29 ~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~ 108 (261)
T PLN02233 29 VKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS 108 (261)
T ss_pred hhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 35578899999999999999887777777888998888888888889999999999999999988765667999999999
Q ss_pred hHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 105 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
+|++.|+++..........++.++++|++++++++++||+|++.+++++++++..++++++++|||||.+++.++..+..
T Consensus 109 ~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 109 EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred HHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 99999987753211111258999999999999988999999999999999999999999999999999999999998887
Q ss_pred hhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 185 PFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
+.......++......+.....+....|.++..++.++++.+++.++++++||++++...+.+|...+++|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 189 PFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence 7767676777665555555555556778888889999999999999999999999999999999999999875
No 4
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=206.85 Aligned_cols=238 Identities=37% Similarity=0.562 Sum_probs=198.9
Q ss_pred eeeeccCC---chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCC--
Q 025144 20 FSYGRVRC---SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ-- 94 (257)
Q Consensus 20 ~~~~~~~~---~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-- 94 (257)
+++..+.+ +..++..|++.|..||.+++..+.+.++.|...+...++..++.++||++||||..+.-+.+..+..
T Consensus 48 fgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~ 127 (296)
T KOG1540|consen 48 FGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFG 127 (296)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccC
Confidence 45555543 4557899999999999999999999999999999999999999999999999999999999987442
Q ss_pred ---ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCC
Q 025144 95 ---GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 171 (257)
Q Consensus 95 ---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g 171 (257)
.+|++.|+|+.|+..++++.++.+....+++.++++|++++||++++||+.++.+.+.++.++++.+++.+|+||||
T Consensus 128 ~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 128 DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG 207 (296)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence 69999999999999999998665544334699999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeecCCCchhHHHHHHHHHhhhhhhhhcc-CCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeE-EeeecCce
Q 025144 172 SRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG-YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK-HYELSGGL 249 (257)
Q Consensus 172 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~-~~~~~~g~ 249 (257)
|++.+.+++..+......+...+....+...... .+....|.++..++.++.+.+++..+.+++||..+. ...+..|+
T Consensus 208 Grf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ye~lt~Gv 287 (296)
T KOG1540|consen 208 GRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYENLTFGV 287 (296)
T ss_pred cEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccccccccceeee
Confidence 9999999998886554444443333332222222 245667999999999999999999999999999997 77777887
Q ss_pred eEEEeeeC
Q 025144 250 MGNLVATR 257 (257)
Q Consensus 250 ~~~~~~~k 257 (257)
..++.+-|
T Consensus 288 ~aIH~giK 295 (296)
T KOG1540|consen 288 VAIHSGIK 295 (296)
T ss_pred eeeehhcc
Confidence 77766543
No 5
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=100.00 E-value=7e-31 Score=205.98 Aligned_cols=226 Identities=33% Similarity=0.628 Sum_probs=185.8
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
.+.++++|++.+..||.+....+......|++.++..+...++.+|||+|||+|..+..+++..++..+++++|+|+.++
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~ 83 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML 83 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 57899999999999999988777788899999898888888899999999999999999998866677999999999999
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhH
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 187 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 187 (257)
+.++++.+..+. +++.++++|..+.++++++||+|++.+++++.+++..+++++.++|+|||.+++.+...+.....
T Consensus 84 ~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 160 (231)
T TIGR02752 84 SVGRQKVKDAGL---HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGF 160 (231)
T ss_pred HHHHHHHHhcCC---CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHH
Confidence 999988754332 57899999999888778899999999999999999999999999999999999888766555443
Q ss_pred HHHHHHHHhhhhhhhhccC--CchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 188 TAIQEWMIDNVVVPVASGY--GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
.....++.... .+..... .....+.++......+.+.+++.++|+++||+++++..+.+|....++|+|
T Consensus 161 ~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 161 KQLYFFYFKYI-MPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHcCh-hHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 33333222111 1211111 122345566667778899999999999999999999999999999999987
No 6
>PRK05785 hypothetical protein; Provisional
Probab=99.97 E-value=3.9e-29 Score=194.03 Aligned_cols=215 Identities=23% Similarity=0.316 Sum_probs=176.3
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCCh
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 104 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 104 (257)
..+.++++|+++++.||..+...+.+....|++.+...+. ..++.+|||+|||||..+..+++.. +.+++|+|+|+
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~ 84 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAE 84 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCH
Confidence 4678999999999999999877777777888877766542 2346799999999999999998874 46999999999
Q ss_pred hHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 105 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
+|++.++++. ..+++|++++++++++||+|++.+++++++|+...+++++++|||. +.+.++..++.
T Consensus 85 ~Ml~~a~~~~-----------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~ 151 (226)
T PRK05785 85 NMLKMNLVAD-----------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDN 151 (226)
T ss_pred HHHHHHHhcc-----------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc--eEEEEeCCCCc
Confidence 9999987641 3578899999999999999999999999999999999999999993 44566666666
Q ss_pred hhHHHHHHHHHhhhhhhhhccCC-chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 185 PFTTAIQEWMIDNVVVPVASGYG-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
.....+..++...........+. ....|.++..++..+.+.+++.++++++| ..++.+.+.+|+..+++++|
T Consensus 152 ~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 152 VIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 66666666665544444433333 35669999999999999999999999984 77899999999999999987
No 7
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.96 E-value=4.1e-26 Score=180.00 Aligned_cols=229 Identities=42% Similarity=0.752 Sum_probs=175.0
Q ss_pred CchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH
Q 025144 27 CSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 106 (257)
Q Consensus 27 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 106 (257)
..+.++++|+..+..|+.............++..+...+...++.+|||+|||+|..+..+++..++..+++++|+++.+
T Consensus 9 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 88 (239)
T PRK00216 9 KQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGM 88 (239)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHH
Confidence 46788999999999999765544444566677777777766678899999999999999999885335799999999999
Q ss_pred HHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchh
Q 025144 107 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186 (257)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 186 (257)
++.++++....+.. .++.+..+|+.+.++++++||+|++..++++.+++..+++++.++|+|||.+++.+...+....
T Consensus 89 ~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~ 166 (239)
T PRK00216 89 LAVGREKLRDLGLS--GNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPP 166 (239)
T ss_pred HHHHHHhhcccccc--cCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchH
Confidence 99999987543221 5789999999887776788999999999999999999999999999999999998876655433
Q ss_pred HHHHHHHHHhhhhhhhhccC-CchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 187 TTAIQEWMIDNVVVPVASGY-GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
......++............ .....+........++++.+++.++|+++||++++...+.+|.+.+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 167 LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 33322222221111111111 112233344455567889999999999999999999999999999999986
No 8
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.95 E-value=2.5e-25 Score=173.67 Aligned_cols=222 Identities=43% Similarity=0.732 Sum_probs=172.7
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHH
Q 025144 31 RQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110 (257)
Q Consensus 31 ~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 110 (257)
++++|+..++.||..+..........++..+...+...++.+|||+|||+|..+..+++..+...+++++|+++.+++.+
T Consensus 1 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~ 80 (223)
T TIGR01934 1 VQEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVA 80 (223)
T ss_pred CHhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence 36889999999999877666566677777777777777888999999999999999998863226899999999999999
Q ss_pred HhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 111 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
+++.. . ..++.+..+|+.+.++++++||+|++..++++.+++..+++++.+.|+|||.+++.+...+........
T Consensus 81 ~~~~~-~----~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~ 155 (223)
T TIGR01934 81 KKKSE-L----PLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKF 155 (223)
T ss_pred HHHhc-c----CCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHH
Confidence 98865 1 157899999999887777889999999999999999999999999999999999988766554333333
Q ss_pred HHHHHhhhhhhhhccCC-chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 191 QEWMIDNVVVPVASGYG-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
..++............. ....+.+.......+.+.+++..+|+++||+++......++...+++++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 156 YKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 33333222221121111 22233444455566789999999999999999999999898888888876
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.93 E-value=5.8e-24 Score=174.90 Aligned_cols=201 Identities=22% Similarity=0.335 Sum_probs=144.1
Q ss_pred chhHHHHhhhhhhhhhhhhhh------hhh--------hhHHHHHHHHHhhhCC-----CCCCeEEEecCCCChhHHHHH
Q 025144 28 SSERQELFSRIAPVYDNLNDL------LSF--------GQHRIWKRMAVSWSGA-----KTGDNVLDVCCGSGDLSFLLS 88 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~------~~~--------~~~~~~~~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~l~ 88 (257)
.+.+.++||..+..|+..... ... ..+..+...++..+.+ .++.+|||||||+|..+..++
T Consensus 58 ~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La 137 (340)
T PLN02244 58 KEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLA 137 (340)
T ss_pred HHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHH
Confidence 467899999888888765321 000 0112233334455555 567899999999999999999
Q ss_pred HHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcc
Q 025144 89 EQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVL 168 (257)
Q Consensus 89 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L 168 (257)
+.+ +.+|+++|+|+.|++.++++....+.. .++.++.+|+.++++++++||+|++..+++|+++...++++++++|
T Consensus 138 ~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~--~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvL 213 (340)
T PLN02244 138 RKY--GANVKGITLSPVQAARANALAAAQGLS--DKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVA 213 (340)
T ss_pred Hhc--CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHc
Confidence 875 579999999999999999887654332 5799999999998888899999999999999999999999999999
Q ss_pred cCCCEEEEEeecCCCchh----HHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 169 KPGSRISVLDFNKSTQPF----TTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 169 k~gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
||||.+++.++....... ............ ... + ....+.+.+++.++++++||++++..+
T Consensus 214 kpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i----~~~------~-----~~p~~~s~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 214 APGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKI----CAA------Y-----YLPAWCSTSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred CCCcEEEEEEecccccccccccCCHHHHHHHHHH----Hhh------c-----cCCCCCCHHHHHHHHHHCCCCeeEeee
Confidence 999999998764322110 000000000000 000 0 001245889999999999999999887
Q ss_pred ecC
Q 025144 245 LSG 247 (257)
Q Consensus 245 ~~~ 247 (257)
+..
T Consensus 279 ~s~ 281 (340)
T PLN02244 279 WSE 281 (340)
T ss_pred CcH
Confidence 753
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.90 E-value=1.2e-22 Score=164.25 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=119.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
++.+|||||||+|.++..+++. +.+|+|+|+++++++.|+++...... ..++.++++|++++++++++||+|++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPV--TSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCc--ccceeEEecCHHHhhhccCCCCEEEEh
Confidence 5669999999999999988754 67999999999999999987543221 147999999999887777899999999
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHH-HHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHH
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE-WMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 227 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (257)
.+++|++++..++++++++|||||.+++.+.+............ .+.... .+. +. .....++++++
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~-lp~----gt--------h~~~~f~tp~e 272 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRW-LPK----GT--------HQWSSFVTPEE 272 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhc-CCC----CC--------cCccCCCCHHH
Confidence 99999999999999999999999999998876543211111100 000000 000 00 01124779999
Q ss_pred HHHHHHHcCceeeEEeee
Q 025144 228 LEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 228 ~~~~l~~~Gf~~~~~~~~ 245 (257)
+..+|+++||++++...+
T Consensus 273 L~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 273 LSMILQRASVDVKEMAGF 290 (322)
T ss_pred HHHHHHHcCCeEEEEeee
Confidence 999999999999987544
No 11
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.90 E-value=2.9e-22 Score=162.57 Aligned_cols=181 Identities=22% Similarity=0.268 Sum_probs=135.0
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHH
Q 025144 32 QELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 110 (257)
Q Consensus 32 ~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 110 (257)
.-+|+..+..||..... ....+.++..++..... .++.+|||+|||+|..+..+++.+ +..+++++|.|+.|++.+
T Consensus 77 ~~~y~~lA~~YD~~~~~--~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A 153 (340)
T PLN02490 77 FWFYRFLSIVYDHIINP--GHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKA 153 (340)
T ss_pred eeEccceeeecCCCeec--CcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence 34667788888875321 12234444444444433 457799999999999999998875 457999999999999999
Q ss_pred HhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 111 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
+++... .++.++.+|++++++++++||+|++..+++++++....+++++++|||||.+++.+...+......
T Consensus 154 ~~k~~~------~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r-- 225 (340)
T PLN02490 154 KQKEPL------KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSR-- 225 (340)
T ss_pred HHhhhc------cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHH--
Confidence 987531 478899999999888888999999999999999999999999999999999988754432211100
Q ss_pred HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 191 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
... .....+.+.+++.++|+++||+.+++.+..
T Consensus 226 --~~~---------------------~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 226 --FFA---------------------DVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred --Hhh---------------------hhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 000 001124578999999999999999877653
No 12
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.90 E-value=1.4e-22 Score=149.31 Aligned_cols=160 Identities=68% Similarity=1.145 Sum_probs=133.1
Q ss_pred EEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 98 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 98 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|+|+|++|++.|+++..........+++++++|+.++++++++||+|++.+++++++|+...+++++++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776432211124799999999999998899999999999999999999999999999999999999
Q ss_pred eecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 178 DFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
++..+..........|+......+..........|.++..++..+.+.+++.++|+++||+.++.....+|+..++++-|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 160 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAMR 160 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEeeC
Confidence 99887766665566666544455554444556778888889999999999999999999999999999999998888754
No 13
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.89 E-value=1.1e-21 Score=155.66 Aligned_cols=177 Identities=20% Similarity=0.292 Sum_probs=136.1
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
++.+++.|++.+..|+.... .+....+.+...+...++.+|||+|||+|..+..+.+. +.+++++|+|+.|+
T Consensus 6 k~~i~~~F~~aa~~Y~~~~~-----~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l 77 (251)
T PRK10258 6 KQAIAAAFGRAAAHYEQHAE-----LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPML 77 (251)
T ss_pred HHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHH
Confidence 56788999999999997543 34455555666666556789999999999999888764 57999999999999
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhH
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 187 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 187 (257)
+.++++. ....++++|++.+++++++||+|+++.++++.+++..++.++.++|+|||.+++..+........
T Consensus 78 ~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el 149 (251)
T PRK10258 78 AQARQKD--------AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPEL 149 (251)
T ss_pred HHHHhhC--------CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHH
Confidence 9998875 34578899999988888899999999999999999999999999999999999988765443221
Q ss_pred HHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCcee
Q 025144 188 TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSR 239 (257)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 239 (257)
........ . .....++.+.+++.+++...|+..
T Consensus 150 ~~~~~~~~--------~-----------~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 150 HQAWQAVD--------E-----------RPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred HHHHHHhc--------c-----------CCccccCCCHHHHHHHHHhCCcee
Confidence 11110000 0 011234678899999999888763
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.89 E-value=1e-21 Score=156.05 Aligned_cols=161 Identities=19% Similarity=0.300 Sum_probs=126.2
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...++..+.+.++.+|||||||+|..+..+++.+ +.+|+++|+|+.+++.++++.... .++.+..+|+.+.++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~-----~~i~~~~~D~~~~~~ 113 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDK-----NKIEFEANDILKKDF 113 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcC-----CceEEEECCcccCCC
Confidence 3455566788899999999999999999998763 569999999999999999886431 579999999998888
Q ss_pred CCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCch-hHHHHHHHHHhhhhhhhhccCCchhhhhh
Q 025144 138 SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
++++||+|++..+++|++ ++..++++++++|||||.+++.++...... ..........
T Consensus 114 ~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~------------------- 174 (263)
T PTZ00098 114 PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIK------------------- 174 (263)
T ss_pred CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHH-------------------
Confidence 888999999998888875 789999999999999999999887543321 1111111111
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.....+.+..++.++|+++||++++..+..
T Consensus 175 --~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 175 --KRKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred --hcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 001135688999999999999999887653
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.89 E-value=1.4e-21 Score=155.28 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=116.1
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.++..+...++.+|||+|||+|.++..+++.. |+.+++|+|+|+.|++.++++ ++.++++|+.+++ ++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWK-PK 87 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCC-CC
Confidence 34555666778899999999999999999885 678999999999999998653 5788999998764 45
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
++||+|+++.++||++++..++++++++|||||.+++........+...................... ....
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--------~~~~ 159 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIP--------FRVG 159 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccc--------cccC
Confidence 78999999999999999999999999999999999886543222111111111110000000000000 0001
Q ss_pred hccCCHHHHHHHHHHcCceeeEEe
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
..+.+.+++.++|+++||++....
T Consensus 160 ~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 160 AVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred cCCCCHHHHHHHHHhCCCeEEEEe
Confidence 234689999999999999855433
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.89 E-value=5.9e-22 Score=157.39 Aligned_cols=198 Identities=20% Similarity=0.186 Sum_probs=130.5
Q ss_pred HHhhhhhhhhhhhhhhhhhhh--HHHHHH---HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 33 ELFSRIAPVYDNLNDLLSFGQ--HRIWKR---MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 33 ~~y~~~a~~y~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
..||.+++.|+........+. .....+ .++..+. .++.+|||+|||+|..+..+++. +.+|+++|+|++|+
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l 79 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMI 79 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHH
Confidence 456777777766422111111 111111 2222333 44579999999999999999876 57999999999999
Q ss_pred HHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchh
Q 025144 108 SMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 186 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 186 (257)
+.|+++....+.. .++.++++|+.+++ .++++||+|++..++++++++..+++++.++|||||.+++..++......
T Consensus 80 ~~a~~~~~~~g~~--~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~ 157 (255)
T PRK11036 80 QRAKQAAEAKGVS--DNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLM 157 (255)
T ss_pred HHHHHHHHhcCCc--cceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHH
Confidence 9999987654422 57899999998764 45688999999999999999999999999999999999888766532211
Q ss_pred HHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 187 TTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
...+.. +.... ........... ......++++++.++++++||++++..-
T Consensus 158 ~~~~~~----~~~~~-~~~~~~~~~~~---~~p~~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 158 HNMVAG----NFDYV-QAGMPKRKKRT---LSPDYPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred HHHHcc----ChHHH-HhcCccccccC---CCCCCCCCHHHHHHHHHHCCCeEeeeee
Confidence 111100 00000 00000000000 0001246889999999999999886543
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.88 E-value=2.3e-21 Score=153.01 Aligned_cols=170 Identities=15% Similarity=0.242 Sum_probs=120.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
..++.+|||+|||+|..+..+++.+ .++.+++++|+|+.|++.|++++...+.. .++.++++|+.+.+++ .+|+|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~--~~v~~~~~d~~~~~~~--~~D~v 129 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP--TPVDVIEGDIRDIAIE--NASMV 129 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEeCChhhCCCC--CCCEE
Confidence 3467899999999999999888743 36789999999999999999998654322 4799999999887653 49999
Q ss_pred EecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHH-HHHHHHHhhhhhhhhccCCchhhhh---hhHHHH
Q 025144 146 TMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTT-AIQEWMIDNVVVPVASGYGLAEEYQ---YLKSSI 219 (257)
Q Consensus 146 ~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 219 (257)
+++.++|++++ ...++++++++|||||.+++.+.......... .....+... . ...... ..... ......
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~-~--~~~g~s-~~ei~~~~~~~~~~ 205 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDF-K--RANGYS-ELEISQKRSMLENV 205 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHH-H--HHcCCC-HHHHHHHHHHHHhh
Confidence 99999999863 56899999999999999999886544433222 122211111 0 011111 11111 111223
Q ss_pred hccCCHHHHHHHHHHcCceeeEEee
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
....+.++..++|+++||+.++.+-
T Consensus 206 ~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 206 MLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred cccCCHHHHHHHHHHcCchhHHHHH
Confidence 4456999999999999998776443
No 18
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.88 E-value=7.9e-22 Score=155.30 Aligned_cols=181 Identities=15% Similarity=0.197 Sum_probs=124.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
.++.+|||+|||+|..+..+++.+ .|+.+++++|+|+.|++.|+++++..+.. .++.++++|+.+.+++ .+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE--IPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEECChhhCCCC--CCCEEe
Confidence 467799999999999999998874 35789999999999999999987654322 4789999999987654 589999
Q ss_pred ecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhH-HHHHHHHHhhhhhhhhccCCchhhhhh---hHHHHh
Q 025144 147 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVVVPVASGYGLAEEYQY---LKSSIR 220 (257)
Q Consensus 147 ~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 220 (257)
+..++|+++ +...++++++++|+|||.+++.+......... ..+...... .. ...... ...... ......
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~-~~--~~~g~~-~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQ-FK--RANGYS-ELEISQKRTALENVM 203 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHH-HH--HHcCCC-HHHHHHHHHHHhccC
Confidence 999999985 46789999999999999999988655443322 111111110 00 000110 011101 111233
Q ss_pred ccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
..++.+++.++++++||+.++..... +.+..++++|
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~~-~~~~~~~~~~ 239 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQC-FNFGSLVAVK 239 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHHH-HhHhHHheeC
Confidence 46799999999999999977654332 3344455543
No 19
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.87 E-value=5.3e-21 Score=139.81 Aligned_cols=170 Identities=24% Similarity=0.292 Sum_probs=131.0
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCee-EEEccCCCCC-CCCCc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE-WVEGDALDLP-FSDCF 141 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~ 141 (257)
++.......|||+|||||..-.+.--. |...|+++|+++.|.+.+.+.+++... .++. ++.++.++++ +++++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~---~~~~~fvva~ge~l~~l~d~s 145 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKP---LQVERFVVADGENLPQLADGS 145 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccC---cceEEEEeechhcCcccccCC
Confidence 344455557899999999988766433 678999999999999999998866532 4565 9999999987 78999
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhc
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 221 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (257)
||.|++..+++...++.+.|+++.++|+|||.++++++..........+.+...+......... +
T Consensus 146 ~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dG---------------C 210 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDG---------------C 210 (252)
T ss_pred eeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccc---------------e
Confidence 9999999999999999999999999999999999999988776665555554444322222222 2
Q ss_pred cCCHHHHHHHHHHcCceeeEEeeecCceeEEEe
Q 025144 222 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 254 (257)
Q Consensus 222 ~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~ 254 (257)
.++. +..+.|+++-|+..+......|...+++
T Consensus 211 ~ltr-d~~e~Leda~f~~~~~kr~~~~ttw~~V 242 (252)
T KOG4300|consen 211 VLTR-DTGELLEDAEFSIDSCKRFNFGTTWVIV 242 (252)
T ss_pred EEeh-hHHHHhhhcccccchhhcccCCceEEEE
Confidence 2233 4457888999999998888776554444
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.87 E-value=1.7e-21 Score=146.96 Aligned_cols=160 Identities=24% Similarity=0.289 Sum_probs=122.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
-++.+|||+|||-|.++..+++. +++|+|+|.++++++.|+....+.+ -++.+.+.+.+++....++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhcCCCccEEEE
Confidence 46889999999999999999987 6899999999999999998876543 3566888888887665689999999
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHH
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 227 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (257)
..+++|.+++..+++.+.+++||||.+++.+.+.........+.. .+....- ..+.. +....+..+++
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~--ae~vl~~---vP~gT-------H~~~k~irp~E 198 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG--AEYVLRI---VPKGT-------HDYRKFIKPAE 198 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH--HHHHHHh---cCCcc-------hhHHHhcCHHH
Confidence 999999999999999999999999999999888644333221111 1111110 00111 12234668899
Q ss_pred HHHHHHHcCceeeEEeeec
Q 025144 228 LEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 228 ~~~~l~~~Gf~~~~~~~~~ 246 (257)
+...+..+|+++.+...+.
T Consensus 199 l~~~~~~~~~~~~~~~g~~ 217 (243)
T COG2227 199 LIRWLLGANLKIIDRKGLT 217 (243)
T ss_pred HHHhcccCCceEEeecceE
Confidence 9999999999988866553
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.86 E-value=1.7e-20 Score=161.94 Aligned_cols=161 Identities=24% Similarity=0.352 Sum_probs=125.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
+.+...+...++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.|+++..... .++.+..+|+.+.+++
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~----~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK----CSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC----CceEEEEcCcccCCCC
Confidence 444555556778899999999999999998874 5799999999999999988764322 4789999999988877
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHH
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
+++||+|++..+++|++++..++++++++|||||.+++.++.............+.. ..
T Consensus 330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---------------------~~ 388 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIK---------------------QR 388 (475)
T ss_pred CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHH---------------------hc
Confidence 789999999999999999999999999999999999998876533222111111111 00
Q ss_pred HhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 219 IREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 219 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.....+.+++.++++++||+++...++.
T Consensus 389 g~~~~~~~~~~~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 389 GYDLHDVQAYGQMLKDAGFDDVIAEDRT 416 (475)
T ss_pred CCCCCCHHHHHHHHHHCCCeeeeeecch
Confidence 1135688999999999999998776643
No 22
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.86 E-value=4.7e-21 Score=141.98 Aligned_cols=151 Identities=26% Similarity=0.401 Sum_probs=110.1
Q ss_pred HHHHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 57 WKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 57 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
+.+.+.++.. ..++.+|||+|||+|.++..+.+. +.+++++|+++.+++. . +......+....
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~ 72 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK--R-----------NVVFDNFDAQDP 72 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH--T-----------TSEEEEEECHTH
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh--h-----------hhhhhhhhhhhh
Confidence 4444554553 567889999999999999999665 4599999999999987 1 223333333343
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhh
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 215 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
..++++||+|++..+++|++++..++++++++|||||.+++.++..... .......|.. ...
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~-----------------~~~ 134 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDP-SPRSFLKWRY-----------------DRP 134 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSH-HHHHHHHCCG-----------------TCH
T ss_pred hccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcch-hhhHHHhcCC-----------------cCc
Confidence 4567899999999999999999999999999999999999998876431 1111111110 000
Q ss_pred HHHHhccCCHHHHHHHHHHcCceeeE
Q 025144 216 KSSIREFLTGKDLEKLALEIGFSRAK 241 (257)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~Gf~~~~ 241 (257)
......+++.+++.++++++||++++
T Consensus 135 ~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 135 YGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cCceeccCCHHHHHHHHHHCCCEEEE
Confidence 00223688999999999999999876
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.85 E-value=3.3e-20 Score=136.02 Aligned_cols=109 Identities=34% Similarity=0.572 Sum_probs=96.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v 145 (257)
..+.+|||+|||+|.++..+++..+++.+++|+|+|++|++.|+++++..+. ++++++++|+.+++ ++ +.||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIEDLPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTCGCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhccccccC-CCeeEE
Confidence 3567999999999999999996656788999999999999999998766543 58999999999976 44 789999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
++..+++++.++..+++++.+.|+++|.+++.+..
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999999988876
No 24
>PRK08317 hypothetical protein; Provisional
Probab=99.85 E-value=6.8e-20 Score=144.60 Aligned_cols=168 Identities=32% Similarity=0.487 Sum_probs=125.6
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.++..+...+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.++++..... .++.+...|....
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~ 81 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG----PNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC----CceEEEecccccC
Confidence 345556667778888999999999999999999886567799999999999999988732221 5789999999887
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchh----HHHHHHHHHhhhhhhhhccCCchhh
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF----TTAIQEWMIDNVVVPVASGYGLAEE 211 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (257)
++++++||+|++..+++++.++..+++++.++|||||.+++.+........ ......... .
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------- 146 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILN-F-------------- 146 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHH-H--------------
Confidence 777789999999999999999999999999999999999887754322110 001111100 0
Q ss_pred hhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 212 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
............++.++|+++||++++....
T Consensus 147 ---~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 147 ---WSDHFADPWLGRRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred ---HHhcCCCCcHHHHHHHHHHHcCCCceeEEEE
Confidence 0000112334568999999999998766554
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.85 E-value=1.1e-19 Score=145.85 Aligned_cols=157 Identities=27% Similarity=0.395 Sum_probs=120.8
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
.+.++.+|||+|||+|..+..+++.+++..+++++|+++.+++.++++....+. .++.+..+|++++++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~---~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY---TNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC---CCEEEEEcchhhCCCCCCceeEE
Confidence 466888999999999998888887766667899999999999999998755432 57899999999888878899999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCH
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
+++.++++.++....+++++++|||||.+++.++................ .........+.
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 211 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAEL-------------------YAGCVAGALQE 211 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHH-------------------HhccccCCCCH
Confidence 99999999999999999999999999999998765433211110000000 00011124578
Q ss_pred HHHHHHHHHcCceeeEEee
Q 025144 226 KDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 226 ~~~~~~l~~~Gf~~~~~~~ 244 (257)
+++.++|+++||..++...
T Consensus 212 ~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 212 EEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred HHHHHHHHHCCCCceEEEe
Confidence 8999999999999876543
No 26
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.84 E-value=1.1e-20 Score=143.60 Aligned_cols=155 Identities=25% Similarity=0.368 Sum_probs=115.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCC----CeeEEEccCCCCCCCCCcccEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYK----NIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~D~v 145 (257)
+.+|||+|||+|-++.+|++. ++.|+|+|.+++|++.|++.. ...+.... ++.+.+.|++.. .+.||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~-~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHK-KMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhh-hcCchhccccceeeehhhcchhhc---cccccee
Confidence 478999999999999999987 689999999999999999984 33322223 356677777765 3559999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhh--hhhhhccCCchhhhhhhHHHHhccC
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV--VVPVASGYGLAEEYQYLKSSIREFL 223 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
+|..+++|..|+..++..+.+.|||||.+++.+.++.-..+...+ ++.+.. +.|... ..+..+.
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i--~~~E~vl~ivp~Gt------------h~~ekfi 228 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTI--FLAEIVLRIVPKGT------------HTWEKFI 228 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc--cHHHHHHHhcCCCC------------cCHHHcC
Confidence 999999999999999999999999999999998876544332211 111111 111111 1234577
Q ss_pred CHHHHHHHHHHcCceeeEEeee
Q 025144 224 TGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 224 ~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
++.++.++++.+|+++..+...
T Consensus 229 ~p~e~~~~l~~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 229 NPEELTSILNANGAQVNDVVGE 250 (282)
T ss_pred CHHHHHHHHHhcCcchhhhhcc
Confidence 9999999999999987765543
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.84 E-value=9.1e-20 Score=148.59 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=116.1
Q ss_pred HhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCc
Q 025144 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 141 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (257)
...+...++.+|||||||+|.++..+++. ++ ..|+|+|+|+.++.+++...+..+.. .++.++.+|+++++. +++
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~~--~~i~~~~~d~e~lp~-~~~ 189 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGND--QRAHLLPLGIEQLPA-LKA 189 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCCC--CCeEEEeCCHHHCCC-cCC
Confidence 33444456789999999999999999887 33 36999999999987655432221111 479999999999887 688
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhc
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 221 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (257)
||+|++..+++|..++..+++++++.|+|||.+++.++..+........... .|.... ....
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~-----------------~y~~~~-~~~~ 251 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGD-----------------RYAKMR-NVYF 251 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchh-----------------HHhcCc-ccee
Confidence 9999999999999999999999999999999998876443222111000000 000000 0001
Q ss_pred cCCHHHHHHHHHHcCceeeEEeeec
Q 025144 222 FLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 222 ~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
..+..++.++|+++||+++++.+..
T Consensus 252 lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 252 IPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred CCCHHHHHHHHHHcCCceEEEEeCC
Confidence 3488999999999999999877653
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.84 E-value=3.6e-19 Score=141.87 Aligned_cols=112 Identities=24% Similarity=0.306 Sum_probs=97.2
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
..+.++..+...++.+|||||||+|.++..+++.+ ++.+++++|+|+.|++.++++. +++.++.+|+.++.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~ 89 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ 89 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC
Confidence 44455566667778899999999999999999885 6779999999999999998875 57889999998764
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++||+|+++.+++++++...++++++++|||||.+++..
T Consensus 90 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 -PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 34689999999999999999999999999999999998764
No 29
>PRK06202 hypothetical protein; Provisional
Probab=99.84 E-value=4.5e-19 Score=139.01 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHh---CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (257)
...+.+.+...+...++.+|||+|||+|.++..+++.. +++.+++++|+|+.|++.++++... .++.+...
T Consensus 45 ~~~~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~ 118 (232)
T PRK06202 45 RGLYRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQA 118 (232)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEE
Confidence 34444444444444667799999999999998887643 3456999999999999999887532 35667777
Q ss_pred cCCCCCCCCCcccEEEecccccCcccH--HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhh-ccCC
Q 025144 131 DALDLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA-SGYG 207 (257)
Q Consensus 131 d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 207 (257)
+...++.++++||+|++++++||+++. ..++++++++++ |.+++.++..+........... .+.. +...
T Consensus 119 ~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~------~~~~~~~~~ 190 (232)
T PRK06202 119 VSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGT------RLLSRSSFV 190 (232)
T ss_pred ecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHH------HHhccCcee
Confidence 766666567899999999999999874 579999999998 5666777666532221111110 1110 0000
Q ss_pred chhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 208 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.. ....++.++++.+++.+++++ ||++...+.+.
T Consensus 191 ~~----d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 191 HT----DGLLSVRRSYTPAELAALAPQ-GWRVERQWPFR 224 (232)
T ss_pred ec----cchHHHHhhcCHHHHHHHhhC-CCeEEecccee
Confidence 00 012456678999999999999 99988877663
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.83 E-value=3.2e-19 Score=143.81 Aligned_cols=159 Identities=17% Similarity=0.170 Sum_probs=112.6
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
.+...++.+|||+|||+|.++..++.. ++ ..|+|+|+|+.|+.+++...+.... ..++.+...++++++.. ++||
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~--~~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDN--DKRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhcc--CCCeEEEECCHHHCCCC-CCcC
Confidence 345566789999999999999888876 33 3799999999999875433221111 14788888998887653 5899
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccC
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 223 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
+|++..+++|..++...|++++++|||||.+++.+............ +. ..|.... .+....
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~----------p~-------~ry~k~~-nv~flp 252 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLV----------PK-------DRYAKMK-NVYFIP 252 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccC----------ch-------HHHHhcc-ccccCC
Confidence 99999999999999999999999999999999876543221100000 00 0000000 001245
Q ss_pred CHHHHHHHHHHcCceeeEEeee
Q 025144 224 TGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 224 ~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
+..++.++|+++||+.+++...
T Consensus 253 S~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 253 SVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred CHHHHHHHHHHCCCeEEEEEec
Confidence 8899999999999999987654
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.83 E-value=3.4e-19 Score=141.43 Aligned_cols=194 Identities=21% Similarity=0.262 Sum_probs=126.8
Q ss_pred chhHHHHhhhhhhhhhhhhhh-h----------hh---hhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC
Q 025144 28 SSERQELFSRIAPVYDNLNDL-L----------SF---GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 93 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~-~----------~~---~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~ 93 (257)
.+.++..||-..+.|..+-+. . .. ..+....+.+...+.+.++.+|||||||.|.++..+++++
T Consensus 7 ~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-- 84 (273)
T PF02353_consen 7 RENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-- 84 (273)
T ss_dssp HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--
T ss_pred HHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--
Confidence 566777777666666543211 0 00 1122223445556688999999999999999999999997
Q ss_pred CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc--ccHHHHHHHHHhcccCC
Q 025144 94 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV--VDKRKALEESFRVLKPG 171 (257)
Q Consensus 94 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~Lk~g 171 (257)
+.+|+|+.+|++..+.+++++...+.. .++.+...|..+++ ++||.|++..++.|+ .+...+++++.++||||
T Consensus 85 g~~v~gitlS~~Q~~~a~~~~~~~gl~--~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 85 GCHVTGITLSEEQAEYARERIREAGLE--DRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp --EEEEEES-HHHHHHHHHHHHCSTSS--STEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred CcEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 689999999999999999999876654 67999999998864 489999999999999 46789999999999999
Q ss_pred CEEEEEeecCCCchhHHHH---HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 172 SRISVLDFNKSTQPFTTAI---QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 172 G~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
|.+++.............. ..|+.... .| ...+.+.+++...++++||++.++..+.
T Consensus 160 G~~~lq~i~~~~~~~~~~~~~~~~~i~kyi-FP-----------------gg~lps~~~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 160 GRLVLQTITHRDPPYHAERRSSSDFIRKYI-FP-----------------GGYLPSLSEILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp EEEEEEEEEE--HHHHHCTTCCCHHHHHHT-ST-----------------TS---BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred cEEEEEecccccccchhhcCCCceEEEEee-CC-----------------CCCCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence 9998877665443321100 02222111 00 0124477889899999999988877653
No 32
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.83 E-value=3.9e-20 Score=124.65 Aligned_cols=95 Identities=37% Similarity=0.642 Sum_probs=84.3
Q ss_pred EEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccC
Q 025144 74 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 153 (257)
Q Consensus 74 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 153 (257)
||+|||+|..+..+++. +..+++++|+++++++.++++... .++.+...|..++++++++||+|++..++++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceee
Confidence 89999999999999987 578999999999999999998754 3566999999999999999999999999999
Q ss_pred cccHHHHHHHHHhcccCCCEEEE
Q 025144 154 VVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 154 ~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
++++..+++++.|+|||||.+++
T Consensus 73 ~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 LEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999999975
No 33
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=3.8e-19 Score=139.07 Aligned_cols=194 Identities=23% Similarity=0.286 Sum_probs=144.3
Q ss_pred CCchhHHHHhhhhhhhhhhhhhh--------------hhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHh
Q 025144 26 RCSSERQELFSRIAPVYDNLNDL--------------LSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV 91 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~ 91 (257)
...+.++..||...+.|....+. .....+..-.+.+...+++.||.+|||||||.|.+++++++++
T Consensus 15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y 94 (283)
T COG2230 15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY 94 (283)
T ss_pred chhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc
Confidence 34566777777666666554211 1111233344556667899999999999999999999999996
Q ss_pred CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCccc--HHHHHHHHHhccc
Q 025144 92 GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLK 169 (257)
Q Consensus 92 ~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk 169 (257)
+.+|+|+++|+++.+.+++++...+.. .+++++..|..++. +.||-|++..+++|+.. ....++++++.|+
T Consensus 95 --~v~V~GvTlS~~Q~~~~~~r~~~~gl~--~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~ 167 (283)
T COG2230 95 --GVTVVGVTLSEEQLAYAEKRIAARGLE--DNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLK 167 (283)
T ss_pred --CCEEEEeeCCHHHHHHHHHHHHHcCCC--cccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcC
Confidence 789999999999999999998776654 58999999998874 55999999999999964 8999999999999
Q ss_pred CCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 170 PGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 170 ~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
|||.+++.+...+..... ....|... .+.| ...+.+.+++.+..+++||.+.+...+
T Consensus 168 ~~G~~llh~I~~~~~~~~-~~~~~i~~-yiFP-----------------gG~lPs~~~i~~~~~~~~~~v~~~~~~ 224 (283)
T COG2230 168 PGGRMLLHSITGPDQEFR-RFPDFIDK-YIFP-----------------GGELPSISEILELASEAGFVVLDVESL 224 (283)
T ss_pred CCceEEEEEecCCCcccc-cchHHHHH-hCCC-----------------CCcCCCHHHHHHHHHhcCcEEehHhhh
Confidence 999999988776664432 11122211 1000 012457788888899999988876654
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.83 E-value=4.9e-19 Score=139.67 Aligned_cols=142 Identities=30% Similarity=0.418 Sum_probs=111.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.. +++.++.+|+.+.++++++||+|++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSN 105 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEh
Confidence 34689999999999999999884 67789999999999999988763 47889999999888778899999999
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHH
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 228 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (257)
.++++..++...++++.++|+|||.+++.++...... .+..... .....+.+.+++
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~---~~~~~~~---------------------~~~~~~~~~~~~ 161 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLH---ELRQSFG---------------------QHGLRYLSLDEL 161 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHH---HHHHHHH---------------------HhccCCCCHHHH
Confidence 9999999999999999999999999998876543321 1111110 011235577888
Q ss_pred HHHHHHcCceeeEEe
Q 025144 229 EKLALEIGFSRAKHY 243 (257)
Q Consensus 229 ~~~l~~~Gf~~~~~~ 243 (257)
.+++..+ |..+...
T Consensus 162 ~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 162 KALLKNS-FELLTLE 175 (240)
T ss_pred HHHHHHh-cCCcEEE
Confidence 8888877 7665543
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.82 E-value=1.4e-19 Score=125.85 Aligned_cols=106 Identities=34% Similarity=0.545 Sum_probs=88.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~ 147 (257)
|+.+|||+|||+|..+..+++.. ++.+++++|+|+++++.++++....... +++++++.|+ ..... .+.||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS--DRITFVQGDAEFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT--TTEEEEESCCHGGTTT-SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEECccccCccc-CCCCCEEEE
Confidence 57899999999999999999964 6889999999999999999998443333 7999999999 33333 356999999
Q ss_pred cc-cccCc---ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GY-GLRNV---VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~-~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.. +++++ ++..++++++++.|+|||++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 98 55533 457889999999999999998865
No 36
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.82 E-value=2.5e-18 Score=140.19 Aligned_cols=163 Identities=13% Similarity=0.219 Sum_probs=119.4
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
.+.+.......+..+|||||||+|..+..+++++ |..+++++|. +.+++.++++....+.. ++++++.+|+.+.++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~--~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA--DRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc--ceEEEEecCccCCCC
Confidence 3445556667778899999999999999999995 7789999997 78999999887665443 579999999987555
Q ss_pred CCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCc--hhHHHHHHHHHhhhhhhhhccCCchhhhh
Q 025144 138 SDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQ--PFTTAIQEWMIDNVVVPVASGYGLAEEYQ 213 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (257)
+ .+|+|++.+++|++++ ...++++++++|+|||.+++.++..... +....+..... +. +..
T Consensus 214 ~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~-----~~----~~~---- 278 (306)
T TIGR02716 214 P--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYIL-----GA----GMP---- 278 (306)
T ss_pred C--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHH-----Hc----ccc----
Confidence 4 3799999999998864 3678999999999999999998754332 11121221111 00 000
Q ss_pred hhHHHHhccCCHHHHHHHHHHcCceeeEE
Q 025144 214 YLKSSIREFLTGKDLEKLALEIGFSRAKH 242 (257)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 242 (257)
.......+.+++.++|+++||+.++.
T Consensus 279 ---~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 279 ---FSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred ---cccccCCCHHHHHHHHHHcCCCeeEe
Confidence 01112445799999999999997764
No 37
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.82 E-value=3.1e-19 Score=139.33 Aligned_cols=147 Identities=19% Similarity=0.192 Sum_probs=116.1
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 151 (257)
+|||||||+|..+..+++.+ ++.+++++|+|+++++.+++++...+.. .++.++..|....+.+ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~--~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ--GRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC--cceEEEecccccCCCC-CCCCEeehHHHH
Confidence 79999999999999999885 5679999999999999999988654433 5789999999765554 689999999999
Q ss_pred cCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHH
Q 025144 152 RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKL 231 (257)
Q Consensus 152 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (257)
+|+.+...++++++++|||||.+++.++......... .. . ....+.+..++.++
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------------~~--~---------~~~~~~s~~~~~~~ 131 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIE---------------HE--E---------TTSYLVTREEWAEL 131 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCcccc---------------cc--c---------cccccCCHHHHHHH
Confidence 9999999999999999999999998876432100000 00 0 00114588999999
Q ss_pred HHHcCceeeEEeeecCc
Q 025144 232 ALEIGFSRAKHYELSGG 248 (257)
Q Consensus 232 l~~~Gf~~~~~~~~~~g 248 (257)
++++||++++..++...
T Consensus 132 l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 132 LARNNLRVVEGVDASLE 148 (224)
T ss_pred HHHCCCeEEEeEECcHh
Confidence 99999999988776443
No 38
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.82 E-value=6.7e-19 Score=136.89 Aligned_cols=197 Identities=21% Similarity=0.233 Sum_probs=131.6
Q ss_pred hhHHHHhhh--------hhhhhhhhhhhhh--hhhHHHHHHHHHhhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCce
Q 025144 29 SERQELFSR--------IAPVYDNLNDLLS--FGQHRIWKRMAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGK 96 (257)
Q Consensus 29 ~~~~~~y~~--------~a~~y~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~ 96 (257)
++++.+|+. +...|+......+ ....+.+++.+..++. ..++.+|||+|||+|.++..+++. +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~ 79 (219)
T TIGR02021 3 EQVRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAI 79 (219)
T ss_pred cHHHHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCE
Confidence 455666665 3444444433221 1234456666666665 567889999999999999999875 469
Q ss_pred EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEE
Q 025144 97 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 97 v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l 174 (257)
++|+|+|++|++.+++++...... .++.+.+.|+.+.+ ++||+|++..++++++ +....++++.+++++++.+
T Consensus 80 v~gvD~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i 154 (219)
T TIGR02021 80 VKAVDISEQMVQMARNRAQGRDVA--GNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIF 154 (219)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCC--CceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999987543321 37899999998764 7899999999988874 4678899999988866555
Q ss_pred EEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeE
Q 025144 175 SVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 251 (257)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~ 251 (257)
.+. . ...... ...++.... .... ......+++.+++.++++++||+++.......|.+.
T Consensus 155 ~~~---~-~~~~~~-~~~~~~~~~--------~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 155 TFA---P-KTAWLA-FLKMIGELF--------PGSS-----RATSAYLHPMTDLERALGELGWKIVREGLVSTGFYN 213 (219)
T ss_pred EEC---C-CchHHH-HHHHHHhhC--------cCcc-----cccceEEecHHHHHHHHHHcCceeeeeecccccchh
Confidence 432 1 111111 111111100 0000 001123568999999999999999998877666543
No 39
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.82 E-value=3.1e-19 Score=136.08 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=109.3
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
+...+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+. .++.+...|+.+.+++ +
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL---DNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC---CcceEEecChhhCCcC-C
Confidence 344445556789999999999999999976 57999999999999999987755432 4688899999877664 6
Q ss_pred cccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHH
Q 025144 141 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 218 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
+||+|++..++|+++ +...+++++.++|+|||.+++.....+...... . + .
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~-------~----------~----~------ 147 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-------V----------G----F------ 147 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC-------C----------C----C------
Confidence 799999999998875 578999999999999999766543322211000 0 0 0
Q ss_pred HhccCCHHHHHHHHHHcCceeeEEe
Q 025144 219 IREFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 219 ~~~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
...++.+++.+.++ ||+++...
T Consensus 148 -~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 148 -PFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred -CCccCHHHHHHHhC--CCeEEEee
Confidence 02357788988887 99988763
No 40
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.81 E-value=1.6e-17 Score=124.67 Aligned_cols=143 Identities=23% Similarity=0.283 Sum_probs=111.7
Q ss_pred hHHHHHHHHHhhh----CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEE
Q 025144 53 QHRIWKRMAVSWS----GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 128 (257)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 128 (257)
.++.|.+.+...+ ..+++.+|||+|||+|..+..++... +..+|+++|+|+.|++.++++.+..+. .+++++
T Consensus 25 ~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~~~ 100 (187)
T PRK00107 25 PEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL---KNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC---CCEEEE
Confidence 3445555553322 23447899999999999999998864 678999999999999999998876553 469999
Q ss_pred EccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCc
Q 025144 129 EGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 208 (257)
Q Consensus 129 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (257)
++|+.+.+. .++||+|++.. +.++..+++.+++.|||||.+++.....
T Consensus 101 ~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~--------------------------- 148 (187)
T PRK00107 101 HGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRD--------------------------- 148 (187)
T ss_pred eccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCC---------------------------
Confidence 999988766 67899999865 3567889999999999999998775221
Q ss_pred hhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 209 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
...++.++.+..|+.+...+++.
T Consensus 149 ---------------~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 149 ---------------PEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred ---------------hHHHHHHHHHhcCceEeeeEEEe
Confidence 23567778888899988877663
No 41
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=128.39 Aligned_cols=168 Identities=17% Similarity=0.159 Sum_probs=125.7
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.++..+...+..+|.|+|||+|..+..|++++ |++.++|+|.|++|++.|++++ +++++..+|+.++.. +
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl--------p~~~f~~aDl~~w~p-~ 90 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL--------PDATFEEADLRTWKP-E 90 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC--------CCCceecccHhhcCC-C
Confidence 35556677778899999999999999999997 8999999999999999998887 899999999999763 4
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
...|+++++.+|++++|-..+|.++...|.|||.|.+..+..-..+....+.....+. ++...++... ..-
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~---p~~~~l~~~~------~~r 161 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEA---PFAQELGGRG------LTR 161 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcC---chhhhhCccc------ccc
Confidence 6799999999999999999999999999999999988765544433333332222111 1111111000 001
Q ss_pred hccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
....++...-++|...+-++--+++.+
T Consensus 162 ~~v~s~a~Yy~lLa~~~~rvDiW~T~Y 188 (257)
T COG4106 162 APLPSPAAYYELLAPLACRVDIWHTTY 188 (257)
T ss_pred CCCCCHHHHHHHhCcccceeeeeeeec
Confidence 235688888899988887765555443
No 42
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.79 E-value=1.6e-18 Score=132.03 Aligned_cols=143 Identities=12% Similarity=0.039 Sum_probs=106.2
Q ss_pred hhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcc
Q 025144 63 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 142 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 142 (257)
..+...++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.++++....+ -++.+...|....+++ ++|
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~~f 95 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKAREN----LPLRTDAYDINAAALN-EDY 95 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhC----CCceeEeccchhcccc-CCC
Confidence 3444555679999999999999999975 5799999999999999988765432 2467777887665554 679
Q ss_pred cEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHh
Q 025144 143 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 220 (257)
Q Consensus 143 D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
|+|++..++++++ +...++++++++|||||.+++.++......... . ...
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-------------------~---------~~~ 147 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-------------------M---------PFS 147 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-------------------C---------CcC
Confidence 9999999999884 567899999999999999777654332210000 0 001
Q ss_pred ccCCHHHHHHHHHHcCceeeEEe
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
..++..++.+.+. +|+++.+.
T Consensus 148 ~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 148 FTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred ccCCHHHHHHHhC--CCeEEEee
Confidence 2458899999886 68888766
No 43
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.79 E-value=2e-17 Score=129.87 Aligned_cols=195 Identities=18% Similarity=0.230 Sum_probs=128.7
Q ss_pred HHHHhhhhhhhhh-hhhhhhhh-hhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHH
Q 025144 31 RQELFSRIAPVYD-NLNDLLSF-GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLS 108 (257)
Q Consensus 31 ~~~~y~~~a~~y~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~ 108 (257)
-.+.|+.+++.|. ........ .....-...+....+..++.+|||+|||+|..+..+++. +.+++++|+++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~ 84 (233)
T PRK05134 8 EIAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIE 84 (233)
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHH
Confidence 3456777776443 32211111 111122234444455667889999999999999888865 468999999999999
Q ss_pred HHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhH
Q 025144 109 MASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 187 (257)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 187 (257)
.++++....+ ..+.+...|..+.+ ...++||+|++..++++.+++..+++.+.+.|+|||.+++..+........
T Consensus 85 ~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~ 160 (233)
T PRK05134 85 VARLHALESG----LKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYL 160 (233)
T ss_pred HHHHHHHHcC----CceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHH
Confidence 9988865432 35677788877654 345789999999999999999999999999999999998876543221111
Q ss_pred HHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 188 TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
. .............. ......++++.+++.++++++||++++...
T Consensus 161 ~---~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 161 L---AIVGAEYVLRMLPK---------GTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred H---HHhhHHHHhhhcCc---------ccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 0 00000000000000 001123567899999999999999987754
No 44
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.79 E-value=5e-18 Score=137.15 Aligned_cols=194 Identities=15% Similarity=0.131 Sum_probs=120.7
Q ss_pred chhHHHHhhhh-----hhhhhhhhhhhh-----hhhHHHHHHHHHhhhCC---CCCCeEEEecCCCChhHHHHHHHhCCC
Q 025144 28 SSERQELFSRI-----APVYDNLNDLLS-----FGQHRIWKRMAVSWSGA---KTGDNVLDVCCGSGDLSFLLSEQVGSQ 94 (257)
Q Consensus 28 ~~~~~~~y~~~-----a~~y~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~ 94 (257)
.+.++++||+. +..|+..+.... ...++.+.+.+..++.. .++.+|||+|||+|.++..+++. +
T Consensus 90 ~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g 166 (315)
T PLN02585 90 KEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---G 166 (315)
T ss_pred HHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---C
Confidence 57899999975 455665332211 11233444555555532 35679999999999999999975 5
Q ss_pred ceEEEEeCChhHHHHHHhhhhhhhhc--cCCCeeEEEccCCCCCCCCCcccEEEecccccCccc--HHHHHHHHHhcccC
Q 025144 95 GKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKP 170 (257)
Q Consensus 95 ~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~ 170 (257)
.+|+++|+|+.|++.++++.+..... ...++.+...|+.++ +++||+|++..+++|+++ ...+++.+.+ +.+
T Consensus 167 ~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~ 242 (315)
T PLN02585 167 AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAE 242 (315)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcC
Confidence 79999999999999999987543110 013678888887654 478999999999988865 3456666665 455
Q ss_pred CCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 171 GSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 171 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
+|.+ +.. .. .......+ ....+ .+.+...... ..+++.++++++|+++||++......
T Consensus 243 g~li-Is~-~p-~~~~~~~l-~~~g~----~~~g~~~~~r---------~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 243 KRLI-ISF-AP-KTLYYDIL-KRIGE----LFPGPSKATR---------AYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred CEEE-EEe-CC-cchHHHHH-HHHHh----hcCCCCcCce---------eeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 5554 432 21 11111111 11110 0001000000 11348999999999999998765543
No 45
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.78 E-value=5.3e-19 Score=129.86 Aligned_cols=157 Identities=27% Similarity=0.395 Sum_probs=119.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-C-CCCCCcccE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFSDCFFDA 144 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~ 144 (257)
+.|+.+|||+|||.|.+..+|.+. .+.+..|+|++++.+..+.++ .+.++++|+++ + .+++++||.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCCCCCccE
Confidence 467899999999999999999887 478999999999988877664 68899999986 3 388999999
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCC--chhhhhhhHHHHhcc
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG--LAEEYQYLKSSIREF 222 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 222 (257)
|+++.+++++..+..+|+++.|+ |...++.-++. ..+...+. ..+.+... ..-.|+|.+....++
T Consensus 79 VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNF------g~W~~R~~----l~~~GrmPvt~~lPy~WYdTPNih~ 145 (193)
T PF07021_consen 79 VILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNF------GHWRNRLQ----LLLRGRMPVTKALPYEWYDTPNIHL 145 (193)
T ss_pred EehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecCh------HHHHHHHH----HHhcCCCCCCCCCCCcccCCCCccc
Confidence 99999999999999999988765 54665544331 11111110 01111111 122467777788889
Q ss_pred CCHHHHHHHHHHcCceeeEEeeecCc
Q 025144 223 LTGKDLEKLALEIGFSRAKHYELSGG 248 (257)
Q Consensus 223 ~~~~~~~~~l~~~Gf~~~~~~~~~~g 248 (257)
.|..++++++++.|+++.+...+..+
T Consensus 146 ~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 146 CTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred ccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 99999999999999999998877544
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.77 E-value=1.2e-19 Score=123.22 Aligned_cols=97 Identities=31% Similarity=0.448 Sum_probs=66.1
Q ss_pred EEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEEEecccc
Q 025144 74 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITMGYGL 151 (257)
Q Consensus 74 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l 151 (257)
||+|||+|.++..+++.+ +..+++++|+|+.|++.+++++..... .+......+..+.. ...++||+|++.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN---DNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC---cceeEEEeecCChhhcccccccceehhhhhH
Confidence 799999999999999995 788999999999999999988866542 23334444433321 122589999999999
Q ss_pred cCcccHHHHHHHHHhcccCCCEE
Q 025144 152 RNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 152 ~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
||++++..+++++++.|||||.|
T Consensus 77 ~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999986
No 47
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.77 E-value=7.7e-18 Score=135.87 Aligned_cols=139 Identities=16% Similarity=0.085 Sum_probs=105.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ .++.+...|+....+ +++||+|++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEE
Confidence 34559999999999999999875 5799999999999999998875543 368888888877555 578999999
Q ss_pred cccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCH
Q 025144 148 GYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225 (257)
Q Consensus 148 ~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
..++++++ +...+++++.++|+|||.+++........... + . .....++.
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~-------------~--------~-------p~~~~~~~ 242 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC-------------P--------M-------PFSFTFKE 242 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC-------------C--------C-------CCCcccCH
Confidence 99999885 57889999999999999977654332221100 0 0 00124688
Q ss_pred HHHHHHHHHcCceeeEEee
Q 025144 226 KDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 226 ~~~~~~l~~~Gf~~~~~~~ 244 (257)
.++++.+. +|++++..+
T Consensus 243 ~el~~~~~--~~~i~~~~e 259 (287)
T PRK12335 243 GELKDYYQ--DWEIVKYNE 259 (287)
T ss_pred HHHHHHhC--CCEEEEEec
Confidence 99999986 599888753
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.75 E-value=2.4e-16 Score=118.19 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=83.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
++.+|||+|||+|..+..++.. .+..+|+++|.|+.|++.++++.+..+. .+++++++|+.++. ..++||+|++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d~~~~~-~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGRAEDFQ-HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecchhhcc-ccCCccEEEeh
Confidence 4779999999999999998876 4667999999999999999888765432 47999999998864 35789999986
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
. + .+....++.++++|+|||.+++.
T Consensus 117 ~-~---~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 117 A-L---ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred h-h---hCHHHHHHHHHHhcCCCCEEEEE
Confidence 5 3 45667888899999999999875
No 49
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.75 E-value=2.8e-17 Score=122.49 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=104.1
Q ss_pred hhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcc
Q 025144 63 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 142 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 142 (257)
..+...++.++||+|||.|+.+.+|+++ +.+|+++|.|+..++.+++..+..+ -.++....|+.+..++ +.|
T Consensus 24 ~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 24 EAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-TTE
T ss_pred HHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-CCc
Confidence 3345556779999999999999999987 7899999999999999887765543 4689999999887765 679
Q ss_pred cEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHh
Q 025144 143 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 220 (257)
Q Consensus 143 D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
|+|++..++++++ ..+.+++++.+.++|||.+++..+......... . ...
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~-------------~---------------~~~ 147 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP-------------S---------------PFP 147 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S-------------S-----------------S
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC-------------C---------------CCC
Confidence 9999988888885 467899999999999999888655332211000 0 001
Q ss_pred ccCCHHHHHHHHHHcCceeeEEeeecC
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHYELSG 247 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 247 (257)
..+.+.++.+.+. ||+++...+..+
T Consensus 148 f~~~~~EL~~~y~--dW~il~y~E~~g 172 (192)
T PF03848_consen 148 FLLKPGELREYYA--DWEILKYNEDVG 172 (192)
T ss_dssp --B-TTHHHHHTT--TSEEEEEEEEEE
T ss_pred cccCHHHHHHHhC--CCeEEEEEcccc
Confidence 2346788888875 899888766543
No 50
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.75 E-value=9.1e-17 Score=130.29 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=82.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCC----cc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDC----FF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~----~~ 142 (257)
.++.+|||+|||+|..+..+++.+..+.+|+++|+|++|++.+++++....+. .++..+++|+.+. +.+.. ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~--~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ--LEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC--ceEEEEEEcccchhhhhcccccCCe
Confidence 45679999999999999999988633579999999999999999887543211 3567789999763 33322 23
Q ss_pred cEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEe
Q 025144 143 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 143 D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.++++..++++++ +...+|++++++|+|||.+++..
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3444556777775 46778999999999999997643
No 51
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.74 E-value=2.7e-16 Score=122.84 Aligned_cols=159 Identities=22% Similarity=0.263 Sum_probs=113.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-CCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~ 147 (257)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+. .++.+...|+.+.+.. +++||+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPL---LKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhcCCCCCccEEEe
Confidence 4679999999999999988765 35799999999999999988754321 2588888888776533 378999999
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHH
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 227 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (257)
.+++++..++..+++.+.++|+|||.+++...+........ .............. . .....++++..+
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~ 186 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLL---AIVGAEYILRIVPK--G-------THDWEKFIKPSE 186 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHH---HHHhhhhhhhcCCC--C-------cCChhhcCCHHH
Confidence 99999999999999999999999999988766543211111 11100000000000 0 001124668899
Q ss_pred HHHHHHHcCceeeEEeee
Q 025144 228 LEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 228 ~~~~l~~~Gf~~~~~~~~ 245 (257)
+.++++++||++++....
T Consensus 187 l~~~l~~~G~~i~~~~~~ 204 (224)
T TIGR01983 187 LTSWLESAGLRVKDVKGL 204 (224)
T ss_pred HHHHHHHcCCeeeeeeeE
Confidence 999999999999887643
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.74 E-value=5.8e-18 Score=115.29 Aligned_cols=96 Identities=33% Similarity=0.606 Sum_probs=79.6
Q ss_pred EEEecCCCChhHHHHHHHh--CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec-c
Q 025144 73 VLDVCCGSGDLSFLLSEQV--GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG-Y 149 (257)
Q Consensus 73 vLdiG~G~G~~~~~l~~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~ 149 (257)
|||+|||+|..+..+.+.+ ++..+++++|+|++|++.++++....+ .++++++.|+.+++..+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999886 334799999999999999999986643 48999999999988777899999995 4
Q ss_pred cccCcc--cHHHHHHHHHhcccCCC
Q 025144 150 GLRNVV--DKRKALEESFRVLKPGS 172 (257)
Q Consensus 150 ~l~~~~--~~~~~l~~~~~~Lk~gG 172 (257)
+++|++ +...+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 488886 47889999999999998
No 53
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.73 E-value=1.4e-16 Score=124.85 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=104.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.++++....+.. .++.+..+|+.. .+++||+|+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLA--GNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCc--cCcEEEEcCchh---ccCCcCEEE
Confidence 356779999999999999999876 457999999999999999987654322 478899988543 357899999
Q ss_pred ecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCC
Q 025144 147 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 224 (257)
Q Consensus 147 ~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (257)
+..+++|++ +....++++.+.+++++.+ ... .. ..... ...... . .+.... .......++
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i-~~~-~~--~~~~~-~~~~l~-~-------~~~~~~-----~~~~~~~~~ 194 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIF-TFA-PY--TPLLA-LLHWIG-G-------LFPGPS-----RTTRIYPHR 194 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEE-EEC-Cc--cHHHH-HHHHhc-c-------ccCCcc-----CCCCccccC
Confidence 999998875 4567788888876544333 221 11 11111 111110 0 000000 000113568
Q ss_pred HHHHHHHHHHcCceeeEEeeecCc
Q 025144 225 GKDLEKLALEIGFSRAKHYELSGG 248 (257)
Q Consensus 225 ~~~~~~~l~~~Gf~~~~~~~~~~g 248 (257)
..++.++++++||++.+......+
T Consensus 195 ~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 195 EKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred HHHHHHHHHHCCCceEeeeeccch
Confidence 899999999999999998876554
No 54
>PRK06922 hypothetical protein; Provisional
Probab=99.73 E-value=5.1e-17 Score=139.95 Aligned_cols=113 Identities=26% Similarity=0.419 Sum_probs=94.2
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCF 141 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 141 (257)
.....++.+|||+|||+|..+..+++.+ ++.+++|+|+|+.|++.++++....+ .++.++++|..+++ +++++
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchHhCccccCCCC
Confidence 3344567899999999999999998875 77899999999999999998764322 46788999998876 67789
Q ss_pred ccEEEecccccCc-------------ccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 142 FDAITMGYGLRNV-------------VDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 142 ~D~v~~~~~l~~~-------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
||+|+++.++|++ .++..++++++++|||||.+++.+...
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 9999999888864 246889999999999999999987543
No 55
>PRK04266 fibrillarin; Provisional
Probab=99.73 E-value=5.6e-16 Score=119.87 Aligned_cols=105 Identities=21% Similarity=0.141 Sum_probs=81.7
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCC
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSD 139 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~ 139 (257)
.+.+.++.+|||+|||+|..+..+++.++ ..+|+++|+++.|++.+.++.+.. .++.++.+|..+. ++ .
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l-~ 139 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHV-V 139 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhc-c
Confidence 46778899999999999999999998864 568999999999999877665432 5789999998752 12 3
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
++||+|++.... ......++++++++|||||.+++.
T Consensus 140 ~~~D~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 140 EKVDVIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ccCCEEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 569999864321 112245689999999999999884
No 56
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.72 E-value=5.9e-16 Score=117.36 Aligned_cols=141 Identities=18% Similarity=0.175 Sum_probs=107.9
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+..+..+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+. .+++++.+|...
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~d~~~ 92 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPGEAPI 92 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEecCchh
Confidence 3445556666777788899999999999999999874 678999999999999999988765432 468899888753
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhh
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
.. .++||+|++..... ....+++.+.+.|+|||.+++.....
T Consensus 93 -~~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~--------------------------------- 134 (187)
T PRK08287 93 -EL-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL--------------------------------- 134 (187)
T ss_pred -hc-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH---------------------------------
Confidence 23 36799999876544 34678899999999999997754221
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
.+..++.++++++||+.++....
T Consensus 135 --------~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 135 --------ENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred --------hhHHHHHHHHHHCCCCcceEEEE
Confidence 13357778999999987765443
No 57
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.72 E-value=1e-15 Score=112.87 Aligned_cols=146 Identities=20% Similarity=0.291 Sum_probs=104.6
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
+...++...-.++||+|||.|.++..|+.+. .+++++|+|+..++.|++++... +++.+.+.|+.+.. |++
T Consensus 35 l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~~-P~~ 105 (201)
T PF05401_consen 35 LLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL-----PHVEWIQADVPEFW-PEG 105 (201)
T ss_dssp HHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS
T ss_pred HHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCCC-CCC
Confidence 3334566666799999999999999999773 58999999999999999998754 69999999998753 578
Q ss_pred cccEEEecccccCccc---HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 141 FFDAITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
+||+|+++.+++++.+ ....+.++...|+|||.+++..+.. ..-.
T Consensus 106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd------~~c~-------------------------- 153 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD------ANCR-------------------------- 153 (201)
T ss_dssp -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H------HHHH--------------------------
T ss_pred CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC------Cccc--------------------------
Confidence 9999999999999964 5678999999999999999877531 0111
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeeecCc
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYELSGG 248 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g 248 (257)
.+.+.+..+.+.++|.+. |+.++..+..++
T Consensus 154 ~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~ 183 (201)
T PF05401_consen 154 RWGHAAGAETVLEMLQEH-LTEVERVECRGG 183 (201)
T ss_dssp HTT-S--HHHHHHHHHHH-SEEEEEEEEE-S
T ss_pred ccCcccchHHHHHHHHHH-hhheeEEEEcCC
Confidence 112345678888888766 777776665444
No 58
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.72 E-value=2.9e-16 Score=123.02 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=111.7
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
.+..-.+++|||||||.|..+..++.. + -..|+|+|+++-...+.+-..+-.+.. ..+......+++++. .+.||
T Consensus 110 ~l~~L~gk~VLDIGC~nGY~~frM~~~-G-A~~ViGiDP~~lf~~QF~~i~~~lg~~--~~~~~lplgvE~Lp~-~~~FD 184 (315)
T PF08003_consen 110 HLPDLKGKRVLDIGCNNGYYSFRMLGR-G-AKSVIGIDPSPLFYLQFEAIKHFLGQD--PPVFELPLGVEDLPN-LGAFD 184 (315)
T ss_pred hhCCcCCCEEEEecCCCcHHHHHHhhc-C-CCEEEEECCChHHHHHHHHHHHHhCCC--ccEEEcCcchhhccc-cCCcC
Confidence 333456889999999999999999877 3 247999999887766644322212111 234455567777776 68899
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccC
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 223 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (257)
+|++..+|.|..+|...|..+++.|++||.+++-+...+.... ....|....-++...| -..
T Consensus 185 tVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~----------~~L~P~~rYa~m~nv~--------FiP 246 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN----------TVLVPEDRYAKMRNVW--------FIP 246 (315)
T ss_pred EEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc----------eEEccCCcccCCCceE--------EeC
Confidence 9999999999999999999999999999999887654333211 1111211111121111 134
Q ss_pred CHHHHHHHHHHcCceeeEEeeec
Q 025144 224 TGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 224 ~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
+...+..+|+++||+.+++.+..
T Consensus 247 s~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 247 SVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred CHHHHHHHHHHcCCceEEEecCc
Confidence 89999999999999999876543
No 59
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.71 E-value=4.4e-16 Score=119.02 Aligned_cols=104 Identities=19% Similarity=0.297 Sum_probs=86.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|..+..+++.+ ++.+++|+|+|++|++.|+++. +++.+.++|+.+ ++++++||+|+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~ 110 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVL 110 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEE
Confidence 4567799999999999999998874 5679999999999999998865 467888999888 77788999999
Q ss_pred ecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 147 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 147 ~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
+..+++|++ +....++++++++ ++.+++.+...+
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 999999985 4677888888887 467777776443
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.71 E-value=2.1e-15 Score=113.51 Aligned_cols=131 Identities=19% Similarity=0.174 Sum_probs=102.4
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
+...++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++....+ .++.+..+|..+.. .++||+
T Consensus 15 l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~~~fD~ 85 (179)
T TIGR00537 15 LRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--RGKFDV 85 (179)
T ss_pred HHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--CCcccE
Confidence 334456789999999999999998762 389999999999999999876433 36788899987643 458999
Q ss_pred EEecccccCccc---------------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhh
Q 025144 145 ITMGYGLRNVVD---------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 203 (257)
Q Consensus 145 v~~~~~l~~~~~---------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (257)
|+++..+++.++ ...+++++.++|+|||.+++......
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------------------- 144 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------------------- 144 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---------------------
Confidence 999988765542 35679999999999999988763321
Q ss_pred ccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 204 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
...++.+.+++.||+.......
T Consensus 145 --------------------~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 145 --------------------GEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred --------------------ChHHHHHHHHhCCCeEEEEEEe
Confidence 2467888999999987766554
No 61
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.71 E-value=1.6e-16 Score=137.29 Aligned_cols=152 Identities=21% Similarity=0.202 Sum_probs=112.6
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC--CC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LP 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~ 136 (257)
..+...+...++.+|||+|||+|..+..+++. ..+++++|+++.|++.+++.... .+++.++++|+.+ ++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLN 98 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccC
Confidence 44555565566779999999999999999987 35899999999999887653221 1578999999964 45
Q ss_pred CCCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhh
Q 025144 137 FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 214 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
+++++||+|++..+++++++ ...++++++++|||||.+++.+........... .
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~---~--------------------- 154 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR---K--------------------- 154 (475)
T ss_pred CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc---c---------------------
Confidence 67789999999999999976 578999999999999999887754322100000 0
Q ss_pred hHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 215 LKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
.....+.....+.+++.++||.......
T Consensus 155 --~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 182 (475)
T PLN02336 155 --NNPTHYREPRFYTKVFKECHTRDEDGNS 182 (475)
T ss_pred --CCCCeecChHHHHHHHHHheeccCCCCE
Confidence 0001234677899999999998765443
No 62
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.70 E-value=8.7e-16 Score=128.04 Aligned_cols=112 Identities=27% Similarity=0.272 Sum_probs=93.7
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+.+.++.+|||||||+|.++..+++.+ +.+|+++|+|+++++.++++... .++.+...|..++ +
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---~ 226 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---N 226 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---C
Confidence 34455677888999999999999999999874 57999999999999999988742 2577888887765 4
Q ss_pred CcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 140 CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
++||+|++..+++|+. +....++++.++|||||.+++.++..+
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 7899999999999984 467899999999999999998876543
No 63
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.70 E-value=3.1e-16 Score=119.56 Aligned_cols=156 Identities=22% Similarity=0.349 Sum_probs=105.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-C-CCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v 145 (257)
+++.+|||+|||+|.++..+++.. +..++++|+|+++++.+++ .++.++++|+.+ + ++++++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhcccccCCCCcCEE
Confidence 466799999999999999887663 5678999999999988754 256788888865 3 3567889999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCH
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 225 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (257)
+++.+++|++++..+++++.+.++ .+++..++ .............. ..+... ...+.+......++++.
T Consensus 80 i~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~---~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~s~ 148 (194)
T TIGR02081 80 ILSQTLQATRNPEEILDEMLRVGR---HAIVSFPN---FGYWRVRWSILTKG-RMPVTG----ELPYDWYNTPNIHFCTI 148 (194)
T ss_pred EEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCC---hhHHHHHHHHHhCC-ccccCC----CCCccccCCCCcccCcH
Confidence 999999999999999999887755 33333221 11111111111110 011100 00112222223457899
Q ss_pred HHHHHHHHHcCceeeEEeeec
Q 025144 226 KDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 226 ~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
+++.++++++||++++...+.
T Consensus 149 ~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 149 ADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred HHHHHHHHHCCCEEEEEEEec
Confidence 999999999999999877763
No 64
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.70 E-value=5.2e-17 Score=120.93 Aligned_cols=181 Identities=17% Similarity=0.152 Sum_probs=129.7
Q ss_pred CCchhHHHHhhhhhhhhhhh-hhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCCh
Q 025144 26 RCSSERQELFSRIAPVYDNL-NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 104 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 104 (257)
.++.-+...||..++.+|.+ -+...+.....+++++.. ....+-.++||+|||||.....+.... ..++|+|+|.
T Consensus 82 pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~ 157 (287)
T COG4976 82 PPSAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISE 157 (287)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhH
Confidence 44578999999999999876 334444455555555443 334446799999999999998887763 5899999999
Q ss_pred hHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 105 NQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
.|++.|.++-- --.+.+.+...+ ...++.||+|++..++.++-+++.++--....|+|||.+.+..-..+
T Consensus 158 nMl~kA~eKg~--------YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~ 229 (287)
T COG4976 158 NMLAKAHEKGL--------YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLP 229 (287)
T ss_pred HHHHHHHhccc--------hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccC
Confidence 99999988621 011223333221 13457899999999999999999999999999999999988765443
Q ss_pred CchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhc-cCCHHHHHHHHHHcCceeeEEeee
Q 025144 183 TQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE-FLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
...-+. -....+ -.+...++++++..||.++.+...
T Consensus 230 ~~~~f~---------------------------l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 230 DDGGFV---------------------------LGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred CCCCee---------------------------cchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 331100 000111 236788999999999999987654
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.69 E-value=7.5e-16 Score=118.22 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=91.1
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...+...+...++.+|||+|||+|..+..+++..++..+|+++|+++++++.+++++...+.. .+++++.+|..+..
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~--~~v~~~~~d~~~~~ 137 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW--GVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEECCcccCC
Confidence 3445556667778889999999999999999988655679999999999999999888654422 35899999998754
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...++||+|++..++.+++ ..+.+.|+|||.+++..
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 4457899999998877664 36788999999997643
No 66
>PTZ00146 fibrillarin; Provisional
Probab=99.69 E-value=2.4e-15 Score=118.76 Aligned_cols=106 Identities=22% Similarity=0.155 Sum_probs=81.6
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC---CCCCCc
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDCF 141 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~ 141 (257)
+.+.++.+|||+|||+|.++.++++.+++...|+++|+++.|++...+..+.. .|+.++..|+... ..+.++
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCEEEECCccChhhhhcccCC
Confidence 46788899999999999999999999866679999999998665554443321 5889999998642 223467
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|+|++... ..++...++.++++.|||||.+++.
T Consensus 203 vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 999998764 2334456677899999999999883
No 67
>PLN03075 nicotianamine synthase; Provisional
Probab=99.69 E-value=2.6e-15 Score=119.01 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=87.6
Q ss_pred CCCCeEEEecCCCChhHH-HHHHHhCCCceEEEEeCChhHHHHHHhhhhh-hhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-VSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
.++.+|+|||||.|.++. .+++...|+.+++++|.++++++.|++.++. .+.. .+++|..+|+.+.....+.||+|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~--~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS--KRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc--CCcEEEECchhhcccccCCcCEE
Confidence 377899999999885544 3443445788999999999999999998853 3332 67999999998864334789999
Q ss_pred EecccccCc--ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNV--VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++. +++++ ++..++++++++.|+|||.+++..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999 88887 589999999999999999998764
No 68
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.69 E-value=1.6e-15 Score=116.52 Aligned_cols=111 Identities=22% Similarity=0.254 Sum_probs=86.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh---------hhccCCCeeEEEccCCCCCCC
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV---------SKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------~~~~~~~~~~~~~d~~~~~~~ 138 (257)
.++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+....... ......+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 46679999999999999999976 789999999999999864321100 000014789999999987632
Q ss_pred -CCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 139 -DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 139 -~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+.||.|+-..++++++ .....++.+.++|||||.+++..+..
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 36799999888888885 35778999999999999887776654
No 69
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.69 E-value=1.4e-15 Score=107.48 Aligned_cols=114 Identities=26% Similarity=0.331 Sum_probs=90.1
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-CC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LP 136 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~ 136 (257)
+..+...+...++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++.+..+. .++.++..|... .+
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGV---SNIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCC---CceEEEeccccccCh
Confidence 3445555566677899999999999999999885 557999999999999999988765432 478888888764 22
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...++||+|++..... ....+++.+++.|+|||.+++..
T Consensus 84 ~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 2346899999976544 34688999999999999998754
No 70
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.68 E-value=3.4e-15 Score=114.14 Aligned_cols=116 Identities=26% Similarity=0.438 Sum_probs=92.4
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL- 135 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 135 (257)
.+...+..+.+.++.+|||+|||+|.++..+++..++..+++++|.++.+++.++++++..+.. .++.++.+|..+.
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~--~~v~~~~~d~~~~l 105 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL--NNIVLIKGEAPEIL 105 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CCeEEEEechhhhH
Confidence 3444555677888999999999999999999887656679999999999999999988765422 5788999998763
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+...+.||+|++... ..++..+++.+.+.|+|||.+++.
T Consensus 106 ~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 106 FTINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred hhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEE
Confidence 222467999998652 346788999999999999999763
No 71
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.68 E-value=4.4e-16 Score=119.20 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=87.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCCC--CCCCcccEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLP--FSDCFFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~D~v 145 (257)
++.+|||+|||+|..+..+++.. +..+++++|+|+++++.++++....+. .++.++++|+ ..++ +++++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL---TNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC---CCEEEEecCHHHHHHHHcCccccceE
Confidence 56799999999999999998874 667999999999999999988765432 5799999999 6554 567889999
Q ss_pred EecccccCcc--------cHHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVV--------DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~--------~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++...+.. ....++++++++|||||.+++..
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 9876554322 14778999999999999998764
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.67 E-value=4.6e-15 Score=117.85 Aligned_cols=147 Identities=22% Similarity=0.308 Sum_probs=109.1
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
...+...+. ..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+. .++.++++|+.+ .+
T Consensus 77 ~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~-~~ 150 (251)
T TIGR03534 77 VEAALERLK-KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDWFE-PL 150 (251)
T ss_pred HHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhc-cC
Confidence 333444333 334589999999999999999874 667999999999999999998765432 468999999976 34
Q ss_pred CCCcccEEEecccccCccc--------------------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHH
Q 025144 138 SDCFFDAITMGYGLRNVVD--------------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 191 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~ 191 (257)
++++||+|+++..+....+ ...+++++.+.|+|||.+++.. .
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~----------- 218 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-G----------- 218 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-C-----------
Confidence 5688999999755442111 2367889999999999987642 1
Q ss_pred HHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEE
Q 025144 192 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGN 252 (257)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~ 252 (257)
+.+.+++.++++++||+.++.+....+..++
T Consensus 219 ------------------------------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~ 249 (251)
T TIGR03534 219 ------------------------------YDQGEAVRALFEAAGFADVETRKDLAGKDRV 249 (251)
T ss_pred ------------------------------ccHHHHHHHHHHhCCCCceEEEeCCCCCcCe
Confidence 1134678889999999988877665555544
No 73
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.67 E-value=9.9e-15 Score=120.65 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=113.1
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+.+.+...+ .++.+|||+|||+|.++..++... +..+++++|+|+++++.++++.+..+ .++.++++|+.+
T Consensus 239 E~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e 311 (423)
T PRK14966 239 EHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFD 311 (423)
T ss_pred HHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhc
Confidence 34444443332 345699999999999999998774 67899999999999999999986543 478999999866
Q ss_pred CCC-CCCcccEEEecccccCc---------------------cc----HHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 135 LPF-SDCFFDAITMGYGLRNV---------------------VD----KRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 135 ~~~-~~~~~D~v~~~~~l~~~---------------------~~----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
... ..++||+|+++...... ++ ..++++.+.+.|+|||.+++. ..
T Consensus 312 ~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE-iG-------- 382 (423)
T PRK14966 312 TDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE-HG-------- 382 (423)
T ss_pred cccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE-EC--------
Confidence 432 24579999997653211 01 235677777899999987643 21
Q ss_pred HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
....+.+.+++++.||..++......|..+++++++
T Consensus 383 ---------------------------------~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 383 ---------------------------------FDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred ---------------------------------ccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 123468889999999998888888888888887753
No 74
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.66 E-value=2.3e-15 Score=116.07 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=91.2
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.....+...+.+.++.+|||||||+|..+..+++..++..+|+++|+++++++.++++++..+. .++.++.+|....
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~---~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY---DNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEECCcccC
Confidence 3445556667788899999999999999999998865567999999999999999999875542 5799999998875
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..+.++||+|++......++ ..+.+.|||||.+++.
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 55567899999987765442 3567789999998775
No 75
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.66 E-value=1.2e-15 Score=121.25 Aligned_cols=111 Identities=20% Similarity=0.207 Sum_probs=86.7
Q ss_pred CCCCeEEEecCCCCh----hHHHHHHHhCC----CceEEEEeCChhHHHHHHhhhhhh------h---------------
Q 025144 68 KTGDNVLDVCCGSGD----LSFLLSEQVGS----QGKVIGLDFSKNQLSMASSRQDLV------S--------------- 118 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~----~~~~l~~~~~~----~~~v~~~D~s~~~~~~a~~~~~~~------~--------------- 118 (257)
.++.+|+|+|||+|. ++..+++..+. +.+|+|+|+|+.|++.|++..-.. +
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999997 45555555421 468999999999999999864110 0
Q ss_pred ---hccCCCeeEEEccCCCCCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEe
Q 025144 119 ---KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 119 ---~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....++.+.+.|+.+.+++.++||+|+|.+++++++ +..+++++++++|+|||.+++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0011378999999998777678999999999999996 45689999999999999998754
No 76
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.66 E-value=1.2e-14 Score=116.94 Aligned_cols=156 Identities=21% Similarity=0.232 Sum_probs=114.7
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+.+.+.......++.+|||+|||+|..+..++... +..+++++|+|+.+++.++++... .. ..++.++.+|+.+
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~-~~--~~~i~~~~~d~~~ 169 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKH-GL--GARVEFLQGDWFE 169 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-CC--CCcEEEEEccccC
Confidence 4444444444455667899999999999999999885 678999999999999999998761 11 1579999999865
Q ss_pred CCCCCCcccEEEecccccCc--------------------------ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 135 LPFSDCFFDAITMGYGLRNV--------------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~--------------------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
. .++++||+|+++...... .....+++++.+.|+|||.+++.. ..
T Consensus 170 ~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~------- 240 (275)
T PRK09328 170 P-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY------- 240 (275)
T ss_pred c-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc-------
Confidence 3 235789999986443211 113567888889999999997632 11
Q ss_pred HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
...+++.+++++.||..++......|..++++++|
T Consensus 241 ----------------------------------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 241 ----------------------------------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred ----------------------------------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEEC
Confidence 12356888999999988877666677777777764
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=99.65 E-value=2.2e-14 Score=108.94 Aligned_cols=145 Identities=24% Similarity=0.307 Sum_probs=105.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++++...+.. ..++.++..|..+. +++++||+|+
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~-~~~~~~d~vi 95 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFEP-FRGDKFDVIL 95 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEecccccc-ccccCceEEE
Confidence 356779999999999999999876 479999999999999998887554321 01288888988763 3455899999
Q ss_pred ecccccCc---------------------ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhcc
Q 025144 147 MGYGLRNV---------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG 205 (257)
Q Consensus 147 ~~~~l~~~---------------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (257)
++..+... .....+++++.++|||||.+++....
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------- 150 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------- 150 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-------------------------
Confidence 87654331 11456799999999999998765421
Q ss_pred CCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee--ecCceeEEEeeeC
Q 025144 206 YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE--LSGGLMGNLVATR 257 (257)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~g~~~~~~~~k 257 (257)
....+++.++++++||++..... ...+...+++++|
T Consensus 151 ----------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 151 ----------------LTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred ----------------cCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 11335778899999998776543 3444555565554
No 78
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.65 E-value=2.4e-15 Score=112.05 Aligned_cols=115 Identities=30% Similarity=0.459 Sum_probs=90.0
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
+.+...+...++.+|||+|||+|..+..+++. .+..+++++|+++.+++.++++++..+. .+++++..|..+. .+
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~-~~ 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEA-LP 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTT-CC
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCc---ccccccccccccc-cc
Confidence 34444443336779999999999999999988 4677899999999999999999876553 2389999998773 34
Q ss_pred CCcccEEEecccccCccc-----HHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++||+|+++..++.-.+ ...+++...+.|+|||.++++.
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 689999999988775543 5788999999999999997654
No 79
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.65 E-value=6.5e-15 Score=114.02 Aligned_cols=112 Identities=22% Similarity=0.206 Sum_probs=90.1
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
....+...+.+.++.+|||+|||+|..+..+++..++..+|+++|+++++++.|+++++..+. .++.++.+|..+..
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~---~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL---DNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC---CCeEEEECCcccCC
Confidence 344566667788899999999999999999998865456799999999999999999876543 57999999998754
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
...++||+|++.....++ ...+.+.|+|||++++.
T Consensus 142 ~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred cccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 445689999988765544 34578889999998775
No 80
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.64 E-value=3.7e-15 Score=123.01 Aligned_cols=124 Identities=16% Similarity=0.192 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
.-+.-.+.++..+....+.+|||+|||+|.++..+++.. |..+++++|.|+.+++.++++++........++++...|.
T Consensus 212 ~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 212 GLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 290 (378)
T ss_pred CcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc
Confidence 334445667777766656799999999999999999884 7889999999999999999988654322113688888888
Q ss_pred CCCCCCCCcccEEEecccccCcc-----cHHHHHHHHHhcccCCCEEEEEe
Q 025144 133 LDLPFSDCFFDAITMGYGLRNVV-----DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+. .++++||+|+++..+|.-. ...++++.++++|+|||.++++.
T Consensus 291 l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 291 LSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 653 3446899999988877542 24678999999999999998874
No 81
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.64 E-value=2.1e-14 Score=115.71 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=112.0
Q ss_pred HHHHHHHHhhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 55 RIWKRMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 55 ~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
+.+...++..+ ...+..+|||+|||+|.++..++... ++.+++++|+|+++++.++++....+.. .++.++++|..
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~--~~v~~~~~d~~ 175 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLE--HRVEFIQSNLF 175 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchh
Confidence 34444444333 22333699999999999999999884 6679999999999999999987654432 35999999987
Q ss_pred CCCCCCCcccEEEecccc-------------cCcc------------cHHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 134 DLPFSDCFFDAITMGYGL-------------RNVV------------DKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l-------------~~~~------------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
+ +++.++||+|+++... .+-+ ....++.++.+.|+|||.+++-. ..
T Consensus 176 ~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~-g~------- 246 (284)
T TIGR00536 176 E-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI-GN------- 246 (284)
T ss_pred c-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE-Cc-------
Confidence 6 3344589999986321 1111 24567888999999999986543 21
Q ss_pred HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHH-HcCceeeEEeeecCceeEEEeeeC
Q 025144 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL-EIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
.....+.+++. +.||..++......|..+++++++
T Consensus 247 ----------------------------------~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 247 ----------------------------------WQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred ----------------------------------cHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 12346667777 468988887777788888887753
No 82
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.64 E-value=9.8e-16 Score=115.23 Aligned_cols=173 Identities=18% Similarity=0.230 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhhCCCCCC--eEEEecCCCChhHHHHHHHhCCC--ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE
Q 025144 54 HRIWKRMAVSWSGAKTGD--NVLDVCCGSGDLSFLLSEQVGSQ--GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 129 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (257)
...+.+.+-.+....... +|||+|||.|.....+++.. +. ..+++.|.|+.+++..+++..-.. .++....
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv 128 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEAFV 128 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch----hhhcccc
Confidence 444444444454443333 89999999999999999874 44 799999999999999988754332 3555555
Q ss_pred ccCCCC----CCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhh
Q 025144 130 GDALDL----PFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 203 (257)
Q Consensus 130 ~d~~~~----~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (257)
.|+... +++.+++|+|++.++|..++ .....+.+++++|||||.|++-|+...+......- . .....
T Consensus 129 ~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~----~-~~~i~-- 201 (264)
T KOG2361|consen 129 WDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK----K-GQCIS-- 201 (264)
T ss_pred eeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhcc----C-Cceee--
Confidence 565542 35678999999999999885 47889999999999999999998876553322111 0 00000
Q ss_pred ccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEe
Q 025144 204 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
. ..|-.-.+....+++.+++++++.++||..++..
T Consensus 202 ~-----nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 202 E-----NFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred c-----ceEEccCCceeeeccHHHHHHHHHhcccchhccc
Confidence 0 0011111111236799999999999999877643
No 83
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.64 E-value=2.9e-14 Score=110.76 Aligned_cols=225 Identities=15% Similarity=0.128 Sum_probs=150.1
Q ss_pred cCccceeeeeeccCC-chhHHHHhhhh---hhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHH
Q 025144 13 TSRSQFRFSYGRVRC-SSERQELFSRI---APVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLS 88 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~y~~~---a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~ 88 (257)
-+++.++++|...++ ...+-++-|+. +..|.-.... .....+..++.+..+.....+-+||||+||.|+.....+
T Consensus 76 DSGstLDYVYrN~p~G~~~~GrliDr~yLnaiGWrGIR~R-k~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal 154 (311)
T PF12147_consen 76 DSGSTLDYVYRNQPQGKGPLGRLIDRNYLNAIGWRGIRQR-KVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDAL 154 (311)
T ss_pred CCcchHhHHhcCCCCCcchHHHHHHHhhhcccchHHHHHH-HHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHH
Confidence 346666777777644 34444444431 1222222110 001133333333334344556799999999999999998
Q ss_pred HHhCC-CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEEecccccCccc---HHHHH
Q 025144 89 EQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAITMGYGLRNVVD---KRKAL 161 (257)
Q Consensus 89 ~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~---~~~~l 161 (257)
+..+. ..++...|+|+..++..++.+++.+.. .-++|.++|+.+.. -.+...|+++++..+..++| ....+
T Consensus 155 ~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~--~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl 232 (311)
T PF12147_consen 155 EKHPERPDSILLRDYSPINVEKGRALIAERGLE--DIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSL 232 (311)
T ss_pred HhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc--cceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHH
Confidence 88532 268999999999999999998876653 23499999998742 22345799999999999987 45679
Q ss_pred HHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeE
Q 025144 162 EESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK 241 (257)
Q Consensus 162 ~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 241 (257)
..+.+++.|||.++.....+... ...+...+. .+..+ ...+++..+..++.++.+++||+.+.
T Consensus 233 ~gl~~al~pgG~lIyTgQPwHPQ--le~IAr~Lt----sHr~g-----------~~WvMRrRsq~EmD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 233 AGLARALEPGGYLIYTGQPWHPQ--LEMIARVLT----SHRDG-----------KAWVMRRRSQAEMDQLVEAAGFEKID 295 (311)
T ss_pred HHHHHHhCCCcEEEEcCCCCCcc--hHHHHHHHh----cccCC-----------CceEEEecCHHHHHHHHHHcCCchhh
Confidence 99999999999998765222111 111111111 11110 01234677999999999999999998
Q ss_pred EeeecCceeEEEeeeC
Q 025144 242 HYELSGGLMGNLVATR 257 (257)
Q Consensus 242 ~~~~~~g~~~~~~~~k 257 (257)
..-...|++++.+|+|
T Consensus 296 q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 296 QRIDEWGIFTVSLARR 311 (311)
T ss_pred heeccCCceEEEeecC
Confidence 8888899999999987
No 84
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.64 E-value=3.7e-15 Score=119.49 Aligned_cols=98 Identities=29% Similarity=0.445 Sum_probs=81.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCC--CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGS--QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+..+|||+|||+|.++..+++.++. ..+++|+|+|+.|++.|+++. +++.+..+|..++++++++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--------~~~~~~~~d~~~lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--------PQVTFCVASSHRLPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--------CCCeEEEeecccCCCcCCceeEEE
Confidence 4568999999999999999887532 237999999999999998764 578999999999888889999999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+.+.. ..+++++++|||||.+++..+..
T Consensus 157 ~~~~~-------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 157 RIYAP-------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EecCC-------CCHHHHHhhccCCCEEEEEeCCC
Confidence 86541 23578999999999998876543
No 85
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.63 E-value=1.3e-14 Score=111.79 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=86.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh------h---hccCCCeeEEEccCCCCC
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV------S---KACYKNIEWVEGDALDLP 136 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~------~---~~~~~~~~~~~~d~~~~~ 136 (257)
...++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+....... + .....++++.++|+.+++
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 3456679999999999999999976 789999999999999864321100 0 000157899999999875
Q ss_pred CC-CCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 FS-DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 ~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.. .+.||.|+-..++++++ .....+..+.++|+|||.+++..+..
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 32 25799999888888885 46788999999999999866655443
No 86
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.62 E-value=4.3e-15 Score=113.11 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=87.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v 145 (257)
...+|||||||+|.++..+++.. |...++++|+++++++.++++....+. .++.++++|+.+++ ++++++|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l---~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL---KNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC---CCEEEEccCHHHHHHhhCCCCceeEE
Confidence 45699999999999999999884 788999999999999999988765432 58999999997643 455689999
Q ss_pred EecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++++...+... ...+++.++++|||||.+++..
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 99876554432 2578999999999999998765
No 87
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.61 E-value=3.6e-14 Score=111.98 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=91.9
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+.......+..+|+|||+|+|.++..+++.+ |+.+++..|. |..++.+++ . ++++++.+|+. -++|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~--------~rv~~~~gd~f-~~~P 157 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-A--------DRVEFVPGDFF-DPLP 157 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-T--------TTEEEEES-TT-TCCS
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-c--------cccccccccHH-hhhc
Confidence 344455566677899999999999999999995 8899999998 888888877 1 79999999999 4555
Q ss_pred CCcccEEEecccccCccc--HHHHHHHHHhcccCC--CEEEEEeecCCCch
Q 025144 139 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPG--SRISVLDFNKSTQP 185 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~g--G~l~~~~~~~~~~~ 185 (257)
. +|++++.++||++++ ...+|+++++.|+|| |.|+|.+...+...
T Consensus 158 ~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 158 V--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp S--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred c--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 4 999999999999964 678899999999999 99999997755543
No 88
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.61 E-value=9.3e-14 Score=111.63 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=82.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.|+++....+.. .++.++++|+.+. +++++||+|++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~--~~i~~~~~D~~~~-~~~~~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLE--DRVTLIQSDLFAA-LPGRKYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchhhc-cCCCCccEEEE
Confidence 445699999999999999999884 6779999999999999999998655432 4789999998652 34568999998
Q ss_pred cccccC------c-------c------------cHHHHHHHHHhcccCCCEEEEE
Q 025144 148 GYGLRN------V-------V------------DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 148 ~~~l~~------~-------~------------~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+..... + + ....+++.+.+.|+|||.+++.
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 743211 0 0 1256788899999999998653
No 89
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.61 E-value=2.5e-14 Score=117.62 Aligned_cols=117 Identities=27% Similarity=0.287 Sum_probs=93.4
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.+...+.......++.+|||+|||+|.++...+.. +..++|+|+++.|+..++++++..+. .++.+.++|+.++
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~l 242 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhcC
Confidence 34555566667788889999999999998876643 57999999999999999998876543 3588999999998
Q ss_pred CCCCCcccEEEecccccCc--------cc-HHHHHHHHHhcccCCCEEEEEe
Q 025144 136 PFSDCFFDAITMGYGLRNV--------VD-KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~--------~~-~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.++++||+|+++..+... .+ ...+++.+.++|+|||.+++..
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 8777899999997554321 11 4778999999999999997764
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.61 E-value=1.8e-14 Score=118.38 Aligned_cols=149 Identities=14% Similarity=0.165 Sum_probs=109.6
Q ss_pred CCchhHHHHhhhhhhhhhhh--hhhh-----h-hhhHHHH--HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCc
Q 025144 26 RCSSERQELFSRIAPVYDNL--NDLL-----S-FGQHRIW--KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG 95 (257)
Q Consensus 26 ~~~~~~~~~y~~~a~~y~~~--~~~~-----~-~~~~~~~--~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~ 95 (257)
++...+++.|+..++.|... .... . ....... ...+...+....+..+||||||+|..+..+++.. |..
T Consensus 69 ~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~ 147 (390)
T PRK14121 69 SKVGILKKALKIFSELFCADIISHNLAENSKKLSLKKPYILDIDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNK 147 (390)
T ss_pred cchHHHHHHHHHHHHHhhccccccccccccccccccccccCCHHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCC
Confidence 34577899999999988632 1110 0 0000111 1223344445556799999999999999999994 788
Q ss_pred eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEEecccccCcccH------HHHHHHHHhc
Q 025144 96 KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITMGYGLRNVVDK------RKALEESFRV 167 (257)
Q Consensus 96 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~------~~~l~~~~~~ 167 (257)
.++|+|+++.+++.+.+++...+. .|+.++++|+..+ .++++++|.|++++...|.... ..+++.++++
T Consensus 148 ~~iGIEI~~~~i~~a~~ka~~~gL---~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~Rv 224 (390)
T PRK14121 148 LFIGIEIHTPSIEQVLKQIELLNL---KNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRV 224 (390)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHH
Confidence 999999999999999988765443 6899999999754 3678999999997765544322 5789999999
Q ss_pred ccCCCEEEEEe
Q 025144 168 LKPGSRISVLD 178 (257)
Q Consensus 168 Lk~gG~l~~~~ 178 (257)
|+|||.+.+.+
T Consensus 225 LkpGG~l~l~T 235 (390)
T PRK14121 225 LKPGGTLELRT 235 (390)
T ss_pred cCCCcEEEEEE
Confidence 99999998765
No 91
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.61 E-value=1.9e-14 Score=103.59 Aligned_cols=133 Identities=23% Similarity=0.318 Sum_probs=105.1
Q ss_pred CCCCC-eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 67 AKTGD-NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
+.... +|||+|||.|.+...|++. +-....+|+|+|+++++.|+...+..+.+ ..|++.+.|+.+..+..++||+|
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~--n~I~f~q~DI~~~~~~~~qfdlv 140 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFS--NEIRFQQLDITDPDFLSGQFDLV 140 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCC--cceeEEEeeccCCcccccceeEE
Confidence 34444 9999999999999999987 34446999999999999998877655432 34999999999977777889999
Q ss_pred EecccccCcc---c-----HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 146 TMGYGLRNVV---D-----KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 146 ~~~~~l~~~~---~-----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
+=-.++..+. + +...+..+.+.|+|||+++|...+
T Consensus 141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN------------------------------------- 183 (227)
T KOG1271|consen 141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN------------------------------------- 183 (227)
T ss_pred eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC-------------------------------------
Confidence 8766665541 1 344588899999999999887643
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
++.+++.+.++..||.......
T Consensus 184 -----~T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 184 -----FTKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred -----ccHHHHHHHHhcCCeEEEEeec
Confidence 4778999999999998776543
No 92
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.60 E-value=3.4e-14 Score=112.45 Aligned_cols=132 Identities=26% Similarity=0.328 Sum_probs=93.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|.++..+++. +. .+++++|+|+.+++.++++....+.. .++.+..++ .+||+|+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~~--------~~fD~Vv 184 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGVE--LNVYLPQGD--------LKADVIV 184 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccCC--------CCcCEEE
Confidence 356789999999999998877654 33 36999999999999999987643211 122222221 2699999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
++... +....++.++.++|||||.+++...... ..+
T Consensus 185 ani~~---~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------------------~~~ 220 (250)
T PRK00517 185 ANILA---NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------------------QAD 220 (250)
T ss_pred EcCcH---HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------------------hHH
Confidence 86532 2356788999999999999988653210 236
Q ss_pred HHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 227 DLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
++.+.+++.||++++.... + .|..++++
T Consensus 221 ~v~~~l~~~Gf~~~~~~~~-~-~W~~~~~~ 248 (250)
T PRK00517 221 EVLEAYEEAGFTLDEVLER-G-EWVALVGK 248 (250)
T ss_pred HHHHHHHHCCCEEEEEEEe-C-CEEEEEEE
Confidence 7888999999998877664 3 34444444
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.60 E-value=2.1e-14 Score=117.82 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=92.0
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.-.+.++..+......+|||+|||+|.++..+++.. +..+++++|+|+.+++.++++++..+ ....++..|..+
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~----l~~~~~~~D~~~ 256 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANG----LEGEVFASNVFS 256 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEccccc
Confidence 3344555555555555689999999999999999884 67799999999999999999886543 235677777765
Q ss_pred CCCCCCcccEEEecccccCc-----ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 135 LPFSDCFFDAITMGYGLRNV-----VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
. .+++||+|+++..+|.- .....+++++.+.|||||.++++.
T Consensus 257 ~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 257 D--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred c--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 3 25789999999988863 346889999999999999998765
No 94
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=107.26 Aligned_cols=132 Identities=23% Similarity=0.250 Sum_probs=97.9
Q ss_pred HhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCC--CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHH
Q 025144 34 LFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKT--GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 111 (257)
Q Consensus 34 ~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 111 (257)
++|..|..|+........ +..+.+..+.++..++ ..-|||||||+|..+..+.+ +++.++|+|+|+.|++.|.
T Consensus 15 Ynd~eA~kYt~nsri~~I--Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~ 89 (270)
T KOG1541|consen 15 YNDTEAPKYTQNSRIVLI--QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAV 89 (270)
T ss_pred echhhhhhccccceeeee--hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHH
Confidence 455788889888766543 4444444555554444 77999999999999988875 4789999999999999998
Q ss_pred hhhhhhhhccCCCeeEEEccCC-CCCCCCCcccEEEecccccCc-------cc----HHHHHHHHHhcccCCCEEEEEe
Q 025144 112 SRQDLVSKACYKNIEWVEGDAL-DLPFSDCFFDAITMGYGLRNV-------VD----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~l~~~-------~~----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++.- .-.++.+|+- -+|+++++||.+++...++++ ++ +..++..++..|++|+..++.-
T Consensus 90 ~~e~--------egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 90 EREL--------EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred Hhhh--------hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 7421 1346666765 478999999999987777665 12 3456788999999999987654
No 95
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.59 E-value=1.8e-13 Score=100.16 Aligned_cols=117 Identities=26% Similarity=0.386 Sum_probs=97.9
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+..+-..+..+.+.++.+++|||||||..+..++ ..+|..+++++|-++++++..+++....+. +|+.++.++..+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~ 95 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPE 95 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchH
Confidence 3455666677889999999999999999999999 447899999999999999999999987763 799999999977
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.-....++|.|++... . +.+.+++.+...|||||.+++...
T Consensus 96 ~L~~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 96 ALPDLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred hhcCCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEee
Confidence 4222237999999887 3 467899999999999999977543
No 96
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.58 E-value=5.4e-14 Score=108.38 Aligned_cols=115 Identities=21% Similarity=0.378 Sum_probs=93.9
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FS 138 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~ 138 (257)
+..+.......+|||+|||+|..+..++++. +..+++++|+++++.+.|+++++..+.. .++++++.|+.++. ..
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~--~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLE--ERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcch--hceeEehhhHHHhhhccc
Confidence 3345555667899999999999999999985 4589999999999999999998765554 79999999999864 34
Q ss_pred CCcccEEEecccccCcc------------------cHHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNVV------------------DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~------------------~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+||+|+|+-.+.... +.+.+++...+.||+||.+.++.
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 45799999987654331 25778999999999999998764
No 97
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.58 E-value=4.1e-14 Score=106.17 Aligned_cols=146 Identities=19% Similarity=0.100 Sum_probs=98.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
...+.||+|||.|+.+..++-.+ -.+|..+|+.+..++.|++.+.... ..-..+++..+.++.+++++||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEeh
Confidence 35699999999999998775432 3589999999999999998775421 133678888888877666899999999
Q ss_pred ccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 149 YGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 149 ~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
.++.|+. |...+|+++.+.|+|+|.+++-+-....... .+....++ -..+.+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~------------------------~~D~~DsS--vTRs~~ 183 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD------------------------EFDEEDSS--VTRSDE 183 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE------------------------EEETTTTE--EEEEHH
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc------------------------ccCCccCe--eecCHH
Confidence 9999996 5789999999999999999886533322110 00000000 134778
Q ss_pred HHHHHHHHcCceeeEEeee
Q 025144 227 DLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~ 245 (257)
.+++++++||++++.....
T Consensus 184 ~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 184 HFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp HHHHHHHHCT-EEEEEEE-
T ss_pred HHHHHHHHcCCEEEEeccc
Confidence 9999999999999986654
No 98
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.58 E-value=4.5e-14 Score=108.42 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=81.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------CC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 138 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~ 138 (257)
..++.+|||+|||+|.++..+++..++...|+++|+++ | ... +++.++++|+.+.+ +.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~--------~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPI--------VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCC--------CCcEEEecCCCChHHHHHHHHHhC
Confidence 46778999999999999999999876667999999988 2 111 57899999998853 55
Q ss_pred CCcccEEEecccccCccc-----------HHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 139 DCFFDAITMGYGLRNVVD-----------KRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
+++||+|++..+.++..+ ...+|+.+.++|||||.+++..+...
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 688999999776655432 14679999999999999988766543
No 99
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.57 E-value=2e-13 Score=117.88 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=104.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+.+|||+|||+|.++..++..+ +..+++++|+|+.+++.|+++....+.. .++.++++|+.+. .+.++||+|+++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~--~~v~~~~~D~~~~-~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVT--DRIQIIHSNWFEN-IEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCc--cceeeeecchhhh-CcCCCccEEEECC
Confidence 4689999999999999998875 6789999999999999999987654322 4789999997652 3456899999864
Q ss_pred cccCc--------------c------------cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhh
Q 025144 150 GLRNV--------------V------------DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 203 (257)
Q Consensus 150 ~l~~~--------------~------------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (257)
..... + ....+++.+.+.|+|||.+++. ..
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig----------------------- 270 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IG----------------------- 270 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-EC-----------------------
Confidence 32211 0 1244677888999999998653 22
Q ss_pred ccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEee
Q 025144 204 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 255 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~ 255 (257)
+...+.+.+++.+.||..++......|..+++++
T Consensus 271 ------------------~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 271 ------------------FKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ------------------CchHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 1134678889999999988877776776666553
No 100
>PRK14967 putative methyltransferase; Provisional
Probab=99.57 E-value=2.8e-13 Score=105.49 Aligned_cols=108 Identities=22% Similarity=0.320 Sum_probs=83.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
...++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.+++++...+ .++.++.+|+.+. +++++||+|
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~V 105 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVV 105 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEE
Confidence 4566789999999999999988875 2 3489999999999999998875443 3578888888763 456789999
Q ss_pred EecccccCcc---------------------cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 146 TMGYGLRNVV---------------------DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 146 ~~~~~l~~~~---------------------~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+++....... ....+++++.++|||||.+++....
T Consensus 106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9975433221 1356788899999999999876443
No 101
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=4.6e-13 Score=108.60 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=81.0
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEeccc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 150 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 150 (257)
.+|||+|||+|.++..++... +..+++++|+|+.+++.|+++.+..+.. .++.++++|+.+. +++++||+|+++..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~--~~i~~~~~D~~~~-l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLE--DRVTLIESDLFAA-LPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC--CcEEEEECchhhh-CCCCCccEEEECCC
Confidence 689999999999999999884 6789999999999999999998755432 4699999998652 34468999998742
Q ss_pred cc-------------Ccc------------cHHHHHHHHHhcccCCCEEEEE
Q 025144 151 LR-------------NVV------------DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 151 l~-------------~~~------------~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.. +.+ ....+++.+.+.|+|||.+++.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 111 1256789999999999999763
No 102
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.2e-13 Score=105.63 Aligned_cols=112 Identities=24% Similarity=0.316 Sum_probs=97.9
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+....++.|+.+|+|.|.|+|.++.+|+..+++..+++.+|..++..+.|+++++..+.. +++.+..+|+.+...++
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--DRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc--cceEEEecccccccccc
Confidence 4556678999999999999999999999998888889999999999999999999887543 45999999999866554
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.||+|++ .+++|-+.++++.++|+|||.+++..+
T Consensus 163 -~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 163 -DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence 8999987 667999999999999999999987653
No 103
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.56 E-value=4.2e-13 Score=100.36 Aligned_cols=164 Identities=16% Similarity=0.120 Sum_probs=115.1
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCe-eEEEccCCCC--CC------CCCcc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALDL--PF------SDCFF 142 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~~--~~------~~~~~ 142 (257)
+|||||||||..+.++++.+ |.....-.|+++..+...+......+. +|+ .-+..|+... +. ..++|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCCCccccccccCCCCc
Confidence 69999999999999999998 788999999999887666665544332 222 2234555443 21 34689
Q ss_pred cEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHh
Q 025144 143 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 220 (257)
Q Consensus 143 D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
|+|++.+++|-.+ ..+.+++...++|++||.|++..+..............+...+...... -
T Consensus 104 D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~---------------~ 168 (204)
T PF06080_consen 104 DAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPE---------------W 168 (204)
T ss_pred ceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCC---------------c
Confidence 9999999999775 5788999999999999999987655444333222222221111111110 1
Q ss_pred ccCCHHHHHHHHHHcCceeeEEeeecCceeEEEe
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 254 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~ 254 (257)
...+.+++.++..++|++..+.++++.....++.
T Consensus 169 GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvf 202 (204)
T PF06080_consen 169 GIRDIEDVEALAAAHGLELEEDIDMPANNLLLVF 202 (204)
T ss_pred CccCHHHHHHHHHHCCCccCcccccCCCCeEEEE
Confidence 2458899999999999999999999877666554
No 104
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.56 E-value=2.1e-13 Score=116.10 Aligned_cols=124 Identities=22% Similarity=0.335 Sum_probs=97.6
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.....+...+...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++++..+. .++.++++|..+
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~ 314 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRN 314 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhh
Confidence 33444555566778889999999999999999999875567999999999999999999876653 478999999987
Q ss_pred CC----CCCCcccEEEecc------cccCccc----------------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 135 LP----FSDCFFDAITMGY------GLRNVVD----------------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 135 ~~----~~~~~~D~v~~~~------~l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+ ...++||.|++.. ++++.++ ...+|.++.+.|||||.++..+.+.
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 64 3357899999743 3333332 3577999999999999998877554
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.55 E-value=2.3e-13 Score=103.94 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
....+..+...+...++.+|||+|||+|.++..+++. .++.+++++|+|+.+++.++++++..+. .+++++.+|+.
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~ 100 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAP 100 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchH
Confidence 3344555666677778899999999999999999876 3567999999999999999998865442 47899999886
Q ss_pred C-CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 134 D-LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 134 ~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+ ++.....+|.+++.. ..+...+++++.+.|+|||.+++....
T Consensus 101 ~~~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 101 ECLAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHHhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 4 221123467766532 235678999999999999999887643
No 106
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.54 E-value=5.1e-14 Score=107.41 Aligned_cols=113 Identities=25% Similarity=0.305 Sum_probs=87.6
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
....++..+.+.++.+|||||||+|+.+..++...++...|+++|..+...+.|++++...+. .++.++.+|...-.
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~---~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI---DNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT---HSEEEEES-GGGTT
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc---CceeEEEcchhhcc
Confidence 445566777899999999999999999999999887777899999999999999999987654 48999999987644
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....+||.|++.......+. .+.+.|++||++++..
T Consensus 137 ~~~apfD~I~v~~a~~~ip~------~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIPE------ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGG-SEEEEEESSBBSS--H------HHHHTEEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHHH------HHHHhcCCCcEEEEEE
Confidence 34578999999887765542 4667789999997743
No 107
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.54 E-value=3.1e-14 Score=99.59 Aligned_cols=106 Identities=29% Similarity=0.409 Sum_probs=86.3
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEEEe
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITM 147 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~ 147 (257)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...+.. .+++++++|..+.. +++++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD--DRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT--TTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC--ceEEEEECchhhchhhccCceeEEEEE
Confidence 4589999999999999999883 579999999999999999988765433 57999999998764 67899999999
Q ss_pred cccccCcc--------cHHHHHHHHHhcccCCCEEEEEee
Q 025144 148 GYGLRNVV--------DKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 148 ~~~l~~~~--------~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+..+.... ....+++++.++|||||.+++...
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 88776432 236789999999999999987653
No 108
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.54 E-value=1.9e-13 Score=110.23 Aligned_cols=103 Identities=22% Similarity=0.245 Sum_probs=79.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.++++....+.. .++.+...+... ..+++||+|++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~--~~~~~~~~~~~~--~~~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVS--DRLQVKLIYLEQ--PIEGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCC--cceEEEeccccc--ccCCCceEEEE
Confidence 46789999999999999888765 3 358999999999999999987654322 345666665332 23578999999
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+...+ ....++.++.+.|||||.+++...
T Consensus 232 n~~~~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 232 NILAE---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ecCHH---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 76533 346789999999999999988653
No 109
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.53 E-value=3.4e-13 Score=104.29 Aligned_cols=111 Identities=21% Similarity=0.155 Sum_probs=87.0
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
....+...+...++.+|||+|||+|..+..+++.. .+++++|.++++++.++++++..+. .++.+..+|..+..
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~ 139 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL---HNVSVRHGDGWKGW 139 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC---CceEEEECCcccCC
Confidence 34455566777888999999999999998877763 4899999999999999998866532 46899999986633
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+.++||+|++...++++ .+.+.+.|+|||.+++...
T Consensus 140 ~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 334789999998766544 3467889999999977543
No 110
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.52 E-value=8.6e-13 Score=98.12 Aligned_cols=162 Identities=20% Similarity=0.242 Sum_probs=95.9
Q ss_pred chhHHHHhhhhhhhhhhhhhh---hhhhhHHHHHHHHHhhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCC
Q 025144 28 SSERQELFSRIAPVYDNLNDL---LSFGQHRIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 103 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s 103 (257)
+++..++|.+-.+.|+.+... ....+...-...+..++. .++...|.|+|||.+.++..+. .+.+|.-+|+-
T Consensus 27 s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLv 102 (219)
T PF05148_consen 27 SEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLV 102 (219)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc----cCceEEEeecc
Confidence 455555655544444333221 111122222344555554 4445799999999999886653 34689999985
Q ss_pred hhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 104 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+ .+-.+..+|+...|++++++|++++..+|... +...++++.+|+||+||.|.|.+...
T Consensus 103 a------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~S-- 161 (219)
T PF05148_consen 103 A------------------PNPRVTACDIANVPLEDESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVKS-- 161 (219)
T ss_dssp -------------------SSTTEEES-TTS-S--TT-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEGG--
T ss_pred C------------------CCCCEEEecCccCcCCCCceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEecc--
Confidence 4 35568889999999999999999988776644 67889999999999999999988542
Q ss_pred chhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEE
Q 025144 184 QPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGN 252 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~ 252 (257)
++-+.+++.+.++..||+.... +.....+..
T Consensus 162 -------------------------------------Rf~~~~~F~~~~~~~GF~~~~~-d~~n~~F~~ 192 (219)
T PF05148_consen 162 -------------------------------------RFENVKQFIKALKKLGFKLKSK-DESNKHFVL 192 (219)
T ss_dssp -------------------------------------G-S-HHHHHHHHHCTTEEEEEE-E--STTEEE
T ss_pred -------------------------------------cCcCHHHHHHHHHHCCCeEEec-ccCCCeEEE
Confidence 3446688889999999997774 333444443
No 111
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.4e-13 Score=101.71 Aligned_cols=111 Identities=22% Similarity=0.264 Sum_probs=92.6
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
....+...+.+.++.+|||||||+|+.+..+++.. .+|+.+|..++..+.|+++++..+. .|+.+.++|...--
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~---~nV~v~~gDG~~G~ 133 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY---ENVTVRHGDGSKGW 133 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC---CceEEEECCcccCC
Confidence 34456677888999999999999999999999884 4999999999999999999987764 58999999998744
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+..+||.|++......+++ .+.+.||+||++++..-
T Consensus 134 ~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 44578999999888777764 46678899999987543
No 112
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.52 E-value=8.6e-14 Score=104.93 Aligned_cols=103 Identities=23% Similarity=0.276 Sum_probs=78.1
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 151 (257)
.++|+|||+|..++.+++.+ .+|+++|+|++|++.+++......- .....+...+..++.-.+++.|+|++..++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccc--cCCccccccccccccCCCcceeeehhhhhH
Confidence 89999999998888888774 5899999999999999887432110 012334444444443347899999999999
Q ss_pred cCcccHHHHHHHHHhcccCCC-EEEEEeec
Q 025144 152 RNVVDKRKALEESFRVLKPGS-RISVLDFN 180 (257)
Q Consensus 152 ~~~~~~~~~l~~~~~~Lk~gG-~l~~~~~~ 180 (257)
|++ |.+++++.++++||++| .+.+-..+
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999 57999999999998766 66665554
No 113
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=6.2e-13 Score=105.25 Aligned_cols=139 Identities=24% Similarity=0.284 Sum_probs=99.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.++.+|||+|||+|-+++..++. + -.+++|+|+++-+++.++++....+.. ..++....+.... ...++||+|++
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~--~~~~~~~~~~~~~-~~~~~~DvIVA 235 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVE--LLVQAKGFLLLEV-PENGPFDVIVA 235 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCc--hhhhcccccchhh-cccCcccEEEe
Confidence 37889999999999999998876 2 347999999999999999988654321 1122333333222 23468999998
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHH
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 227 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (257)
+-..+ -...+...+.+.+||||.+++.-.... ..+.
T Consensus 236 NILA~---vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------------------q~~~ 271 (300)
T COG2264 236 NILAE---VLVELAPDIKRLLKPGGRLILSGILED-----------------------------------------QAES 271 (300)
T ss_pred hhhHH---HHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------------------HHHH
Confidence 66222 246788999999999999987642210 2367
Q ss_pred HHHHHHHcCceeeEEeeecCceeEEEeeeC
Q 025144 228 LEKLALEIGFSRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 228 ~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~k 257 (257)
+.+.++++||++++.... +.|..++++|
T Consensus 272 V~~a~~~~gf~v~~~~~~--~eW~~i~~kr 299 (300)
T COG2264 272 VAEAYEQAGFEVVEVLER--EEWVAIVGKR 299 (300)
T ss_pred HHHHHHhCCCeEeEEEec--CCEEEEEEEc
Confidence 788999999999887766 3366666554
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.52 E-value=1.8e-12 Score=102.30 Aligned_cols=116 Identities=19% Similarity=0.172 Sum_probs=83.3
Q ss_pred HHHHHHHHhhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 55 RIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
+.+.+.+..++.. .++.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++++.. +.+++++|+.
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~ 143 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLY 143 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeech
Confidence 3344444444332 234589999999999999998874 5679999999999999999987542 3578889987
Q ss_pred CCCC--CCCcccEEEecccccCcc----------------------c----HHHHHHHHHhcccCCCEEEEE
Q 025144 134 DLPF--SDCFFDAITMGYGLRNVV----------------------D----KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 134 ~~~~--~~~~~D~v~~~~~l~~~~----------------------~----~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+... ..++||+|+++....... + ...++..+.+.|+|||.+++.
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5321 135799999976543110 1 246778888999999999765
No 115
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.4e-12 Score=102.94 Aligned_cols=137 Identities=22% Similarity=0.295 Sum_probs=104.5
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 151 (257)
+|||+|||+|..++.++... +..+|+++|+|+.+++.|+++....+. .++.+++.|..+. . .++||+|+++...
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~-~-~~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEP-L-RGKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeecccc-c-CCceeEEEeCCCC
Confidence 79999999999999999984 678999999999999999999876543 3566677776652 2 3489999997552
Q ss_pred cCcc-----------c--------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccC
Q 025144 152 RNVV-----------D--------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 206 (257)
Q Consensus 152 ~~~~-----------~--------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (257)
-.-+ + ..+++..+.+.|+|||.+++-. .
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~-g-------------------------- 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI-G-------------------------- 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE-C--------------------------
Confidence 2111 1 2556778888999988886542 1
Q ss_pred CchhhhhhhHHHHhccCCHHHHHHHHHHcC-ceeeEEeeecCceeEEEeee
Q 025144 207 GLAEEYQYLKSSIREFLTGKDLEKLALEIG-FSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~g~~~~~~~~ 256 (257)
+-+.+.+.+++.+.| |..+.......|...++.++
T Consensus 240 ---------------~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 240 ---------------LTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred ---------------CCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 224578899999999 78788888888888777765
No 116
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.51 E-value=4e-13 Score=104.53 Aligned_cols=113 Identities=26% Similarity=0.414 Sum_probs=90.9
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..++..+.+.||.+|||.|.|+|.++..|++.++|..+|+.+|..++..+.|+++++..+.. .++.+.+.|+.+..++
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~--~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD--DNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC--TTEEEEES-GGCG--S
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC--CCceeEecceeccccc
Confidence 45667789999999999999999999999999989999999999999999999999887654 6899999999753332
Q ss_pred ---CCcccEEEecccccCcccHHHHHHHHHhcc-cCCCEEEEEe
Q 025144 139 ---DCFFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRISVLD 178 (257)
Q Consensus 139 ---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-k~gG~l~~~~ 178 (257)
++.+|.|++ .+++|-..+..+.++| ++||.+.+..
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred ccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 367999987 5678888999999999 8999997764
No 117
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.51 E-value=7.3e-13 Score=105.89 Aligned_cols=135 Identities=24% Similarity=0.292 Sum_probs=94.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|||+|||+|-+++..++. + -.+|+++|+++.+++.|+++....+.. .++.+. ...+ ...++||+|+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~--~~~~v~--~~~~--~~~~~~dlvv 230 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVE--DRIEVS--LSED--LVEGKFDLVV 230 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-T--TCEEES--CTSC--TCCS-EEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCC--eeEEEE--Eecc--cccccCCEEE
Confidence 356779999999999999988776 3 348999999999999999998765543 344332 2222 2348899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
++-... -+..++..+.+.|+|||.+++.-.... ..+
T Consensus 231 ANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------------------~~~ 266 (295)
T PF06325_consen 231 ANILAD---VLLELAPDIASLLKPGGYLILSGILEE-----------------------------------------QED 266 (295)
T ss_dssp EES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------------------GHH
T ss_pred ECCCHH---HHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------------------HHH
Confidence 876433 346778889999999999988754321 346
Q ss_pred HHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 227 DLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
++.+.+++ ||++.+.... ++ |..++++
T Consensus 267 ~v~~a~~~-g~~~~~~~~~-~~-W~~l~~~ 293 (295)
T PF06325_consen 267 EVIEAYKQ-GFELVEEREE-GE-WVALVFK 293 (295)
T ss_dssp HHHHHHHT-TEEEEEEEEE-TT-EEEEEEE
T ss_pred HHHHHHHC-CCEEEEEEEE-CC-EEEEEEE
Confidence 77788876 9998877754 33 4444444
No 118
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.50 E-value=3.5e-13 Score=103.55 Aligned_cols=95 Identities=21% Similarity=0.211 Sum_probs=78.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
...++||||+|.|..+..++..+ .+|+++|.|+.|....+++ +++++..+- +.-.+.+||+|.|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k----------g~~vl~~~~--w~~~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK----------GFTVLDIDD--WQQTDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC----------CCeEEehhh--hhccCCceEEEeeh
Confidence 35689999999999999998775 5899999999998777654 444443333 33235689999999
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++|....+|..+|+.+++.|+|+|.+++..
T Consensus 159 NvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 NVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999999999999999999997754
No 119
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=4e-13 Score=109.04 Aligned_cols=112 Identities=26% Similarity=0.388 Sum_probs=87.1
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...+...+.+.++.+|||+|||+|..+..+++..+....|+++|.++++++.|+++++..+. .++.++++|.....
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~---~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI---ENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCChhhcc
Confidence 334455566777888999999999999999998864345799999999999999998765442 57899999987654
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
...++||+|++...+... ...+.+.|+|||.+++.
T Consensus 145 ~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred cccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 444679999997665543 23467789999998774
No 120
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.49 E-value=4.9e-13 Score=102.91 Aligned_cols=153 Identities=24% Similarity=0.269 Sum_probs=104.8
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh-h-----h---hccCCCeeE
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-V-----S---KACYKNIEW 127 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~-----~---~~~~~~~~~ 127 (257)
+.+.+.. +...++.+||..|||.|..+..|+++ +.+|+|+|+|+.+++.+.+.... . . .....++++
T Consensus 26 L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 26 LVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp HHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred HHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 3333333 55677789999999999999999987 68999999999999998432211 0 0 011247899
Q ss_pred EEccCCCCCCCC-CcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhc
Q 025144 128 VEGDALDLPFSD-CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS 204 (257)
Q Consensus 128 ~~~d~~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (257)
+++|+.+++... ++||+|+=...++.++ ...+..+.+.++|+|||.++++.+..+......
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~G---------------- 165 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEG---------------- 165 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSS----------------
T ss_pred EEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCC----------------
Confidence 999999976432 5799999877788775 578899999999999999655554433211000
Q ss_pred cCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 205 GYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
..| ..+.+++++++. .+|++.....
T Consensus 166 -----PPf---------~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 166 -----PPF---------SVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp -----SS-------------HHHHHHHHT-TTEEEEEEEE
T ss_pred -----cCC---------CCCHHHHHHHhc-CCcEEEEEec
Confidence 001 236789999988 8898776554
No 121
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=8.9e-13 Score=111.85 Aligned_cols=132 Identities=19% Similarity=0.324 Sum_probs=100.5
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP- 136 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~- 136 (257)
...+...+...++.+|||+|||+|..+.++++..++..+++++|+++.+++.++++++..+. .++.+.+.|...++
T Consensus 226 s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 226 SQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTE 302 (431)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhh
Confidence 34455566778889999999999999999999876678999999999999999999876653 46889999988765
Q ss_pred CCCCcccEEEecccc------cCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHH
Q 025144 137 FSDCFFDAITMGYGL------RNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE 192 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l------~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 192 (257)
..+++||.|++.... ..-++ ..++|.++.+.|||||.++..+.+.........+..
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~ 380 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKR 380 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHH
Confidence 345789999974332 11111 255699999999999999888877544444333333
No 122
>PHA03411 putative methyltransferase; Provisional
Probab=99.49 E-value=1.5e-12 Score=101.88 Aligned_cols=126 Identities=15% Similarity=0.293 Sum_probs=95.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
....+|||+|||+|.++..++.+. +..+++++|+++.+++.++++. +++.++++|+.+... +.+||+|++
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~D~~e~~~-~~kFDlIIs 132 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL--------PEAEWITSDVFEFES-NEKFDVVIS 132 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--------cCCEEEECchhhhcc-cCCCcEEEE
Confidence 345699999999999999888763 4569999999999999998874 578899999988653 468999999
Q ss_pred cccccCccc--------------------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCC
Q 025144 148 GYGLRNVVD--------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 207 (257)
Q Consensus 148 ~~~l~~~~~--------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (257)
+..+.+.+. ....+......|+|+|.+.+.-...+-
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~------------------------ 188 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY------------------------ 188 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc------------------------
Confidence 888877521 245667778888999976554211100
Q ss_pred chhhhhhhHHHHhccCCHHHHHHHHHHcCce
Q 025144 208 LAEEYQYLKSSIREFLTGKDLEKLALEIGFS 238 (257)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 238 (257)
| ..-++.++.+++|+++||.
T Consensus 189 ----y-------~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 189 ----Y-------DGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred ----c-------cccCCHHHHHHHHHhcCcE
Confidence 0 1245789999999999996
No 123
>PRK00811 spermidine synthase; Provisional
Probab=99.48 E-value=1.1e-12 Score=105.46 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=83.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc--cCCCeeEEEccCCCCC-CCCCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDLP-FSDCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~~D~ 144 (257)
+.+.+||+||||+|..+..+++. .+..+|+++|+++.+++.+++.+...... ..++++++.+|..... ..+++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 34569999999999999999876 23468999999999999999987543211 1268999999987642 24578999
Q ss_pred EEecccccCccc----HHHHHHHHHhcccCCCEEEEE
Q 025144 145 ITMGYGLRNVVD----KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 145 v~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|++...-...+. ...+++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998654332221 266789999999999998764
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.48 E-value=1.3e-12 Score=104.06 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=93.4
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.....+.+.++.+|||+|||+|..+..+++.+++...|+++|+++.+++.++++++..+. .++.+.+.|...++...
T Consensus 62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~ 138 (264)
T TIGR00446 62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFGAAV 138 (264)
T ss_pred HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhhhhc
Confidence 333456677889999999999999999998876567999999999999999999876543 47899999987765445
Q ss_pred CcccEEEecccccC------ccc----------------HHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 140 CFFDAITMGYGLRN------VVD----------------KRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 140 ~~~D~v~~~~~l~~------~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+.||.|++...... -++ ...+|+.+.+.|||||.++..+.+...
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 67999997433221 111 245899999999999999887765433
No 125
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.47 E-value=1.8e-13 Score=102.32 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=111.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
...++|||||-|....++... .-.+++.+|.|..|++.++.... ++ -......+|-+.+++.++++|+|+++.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~qd---p~--i~~~~~v~DEE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQD---PS--IETSYFVGDEEFLDFKENSVDLIISSL 145 (325)
T ss_pred CcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccCC---Cc--eEEEEEecchhcccccccchhhhhhhh
Confidence 458999999999999999877 24589999999999999887642 10 245667888888999999999999999
Q ss_pred cccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHH
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLE 229 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (257)
.+||..+++..+.+++..|||+|.++...+......-....... . ......+. ..++..+-...++-
T Consensus 146 slHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqL-A-----elER~GGi-------SphiSPf~qvrDiG 212 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQL-A-----ELEREGGI-------SPHISPFTQVRDIG 212 (325)
T ss_pred hhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhH-H-----HHHhccCC-------CCCcChhhhhhhhh
Confidence 99999999999999999999999997654443332111111110 0 00111111 11223355678999
Q ss_pred HHHHHcCceeeEEe
Q 025144 230 KLALEIGFSRAKHY 243 (257)
Q Consensus 230 ~~l~~~Gf~~~~~~ 243 (257)
.+|.++||....+.
T Consensus 213 ~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 213 NLLTRAGFSMLTVD 226 (325)
T ss_pred hHHhhcCcccceec
Confidence 99999999866543
No 126
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.47 E-value=1.4e-12 Score=100.21 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=89.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-------h--hccCCCeeEEEccCCCCC
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-------S--KACYKNIEWVEGDALDLP 136 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~--~~~~~~~~~~~~d~~~~~ 136 (257)
...++.+||+.|||.|..+.+|+++ +.+|+|+|+|+..++.+.+..... . .....+++++++|+.+++
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3445679999999999999999986 789999999999999976532100 0 000157999999999985
Q ss_pred CC---CCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 FS---DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 ~~---~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.. .+.||+|+-...+++++ ...+..+.+.++|+|||.+++..+..
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 32 26799999988899886 36788999999999999998877653
No 127
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.3e-12 Score=102.81 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=101.6
Q ss_pred hhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCe
Q 025144 46 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 125 (257)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 125 (257)
....+...-+.-.+.++..+....+.+|||+|||.|.+++.+++.. |..+++.+|.|..+++.++++++.... .+.
T Consensus 135 pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~ 210 (300)
T COG2813 135 PGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV---ENT 210 (300)
T ss_pred CCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC---Ccc
Confidence 4455555666667788888877777799999999999999999994 789999999999999999999876443 233
Q ss_pred eEEEccCCCCCCCCCcccEEEecccccCccc-----HHHHHHHHHhcccCCCEEEEEe
Q 025144 126 EWVEGDALDLPFSDCFFDAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 126 ~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.++..|..+.. . ++||+|+++..+|.=.+ ..++++...+.|++||.|.++.
T Consensus 211 ~v~~s~~~~~v-~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 211 EVWASNLYEPV-E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred EEEEecccccc-c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 67777776633 3 38999999999984432 2478999999999999997765
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.46 E-value=2.4e-12 Score=109.47 Aligned_cols=127 Identities=18% Similarity=0.285 Sum_probs=95.5
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.-...+...+...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++..+.. ..+.+..+|....
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~ 301 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGP 301 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeccccccc
Confidence 3445556667788889999999999999999998864 679999999999999999998765432 1334466776554
Q ss_pred CC--CCCcccEEEec------ccccCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 136 PF--SDCFFDAITMG------YGLRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 136 ~~--~~~~~D~v~~~------~~l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
+. ++++||.|++. .+++..++ ...+|.++.++|||||.+++.+.+.....
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~E 375 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEE 375 (426)
T ss_pred cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 32 45789999963 23444333 35789999999999999999887764433
No 129
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.45 E-value=4e-12 Score=108.68 Aligned_cols=123 Identities=23% Similarity=0.325 Sum_probs=94.8
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
......+...++.+|||+|||+|..+..+++.+++..+++++|+|+.+++.++++++..+. .++.+.++|..++. +
T Consensus 240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS-P 315 (445)
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc-c
Confidence 3444556677888999999999999999998765567999999999999999999876543 47899999998764 4
Q ss_pred CCcccEEEeccc------ccCcc----------------cHHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 139 DCFFDAITMGYG------LRNVV----------------DKRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 139 ~~~~D~v~~~~~------l~~~~----------------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
+++||+|++... +...+ ....+|.++.+.|||||.+++.+.+.....
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~E 384 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEE 384 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 568999996321 11111 123589999999999999999887664433
No 130
>PRK01581 speE spermidine synthase; Validated
Probab=99.45 E-value=6.5e-12 Score=102.08 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=102.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh--hhhhh--hccCCCeeEEEccCCCC-CCCCCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVS--KACYKNIEWVEGDALDL-PFSDCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~ 142 (257)
..+.+||++|||+|..+..+++. .+..+++++|+++++++.|++. +.... .-..++++++.+|..++ ....++|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 44569999999999999988876 3457999999999999999962 11111 10126899999999874 3335689
Q ss_pred cEEEecccccC---ccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 143 DAITMGYGLRN---VVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 143 D~v~~~~~l~~---~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
|+|++...-.. ... -..+++.+++.|+|||++++..-+. ... ...
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp----~~~--~~~------------------------ 277 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP----ADA--PLV------------------------ 277 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh----hhh--HHH------------------------
Confidence 99998743111 111 2568999999999999987653111 000 000
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeee---cCceeEEEeeeC
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYEL---SGGLMGNLVATR 257 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~---~~g~~~~~~~~k 257 (257)
...+.+.++++|+.+...... +++.|++.+|.|
T Consensus 278 -------~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 278 -------YWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred -------HHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence 023567888999987765554 355588877754
No 131
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.45 E-value=2.7e-12 Score=97.37 Aligned_cols=102 Identities=29% Similarity=0.396 Sum_probs=77.4
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-------
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------- 136 (257)
...+.++.+|||+|||+|.++..+++...+..+++++|+|+.+ .. +++.+++.|..+..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~--------~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI--------ENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC--------CCceEEEeeCCChhHHHHHHH
Confidence 3456788899999999999999998886455689999999854 11 47888888987642
Q ss_pred -CCCCcccEEEeccccc--------Cc---ccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 -FSDCFFDAITMGYGLR--------NV---VDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~--------~~---~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+.++||+|++....+ +. .+...+++.+.+.|+|||.+++..+
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 3456899999865322 11 1236789999999999999988643
No 132
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=5.1e-12 Score=107.49 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=92.7
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
.-.......+...++.+|||+|||+|..+..+++.. ++.+|+++|.++.+++.++++++..+ .++.++++|..+.
T Consensus 231 ~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~ 305 (427)
T PRK10901 231 AAAQLAATLLAPQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDP 305 (427)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccc
Confidence 334445556677888999999999999999999885 44799999999999999999987654 2468899999875
Q ss_pred C--CCCCcccEEEecccccC------cc---------c-------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 136 P--FSDCFFDAITMGYGLRN------VV---------D-------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 136 ~--~~~~~~D~v~~~~~l~~------~~---------~-------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+ .++++||.|++...... -+ + ...++..+.+.|||||.+++.+.+.
T Consensus 306 ~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 306 AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3 33568999996443211 11 1 2368999999999999998887654
No 133
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.43 E-value=2.1e-12 Score=87.80 Aligned_cols=101 Identities=36% Similarity=0.532 Sum_probs=83.6
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEeccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGYG 150 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~ 150 (257)
+|+|+|||.|..+..+++. +..+++++|+++.++..+++...... ..++.++..|..+... ..++||+|++..+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALL---ADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhccc---ccceEEEEcChhhhccccCCceEEEEEccc
Confidence 5899999999999988872 46799999999999998884322211 2578999999988653 4578999999999
Q ss_pred ccC-cccHHHHHHHHHhcccCCCEEEEE
Q 025144 151 LRN-VVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 151 l~~-~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+++ ......+++.+.+.++|||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 998 778899999999999999999765
No 134
>PRK04457 spermidine synthase; Provisional
Probab=99.43 E-value=2.4e-12 Score=102.22 Aligned_cols=112 Identities=12% Similarity=0.183 Sum_probs=85.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCCcccEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v 145 (257)
..++.+|||||||+|.++..+++.. |..+++++|+++++++.|++.+...+. .++++++.+|..+. ....++||+|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~--~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN--GERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC--CCceEEEECCHHHHHHhCCCCCCEE
Confidence 3456799999999999999999885 778999999999999999988753221 16899999998653 2223679999
Q ss_pred Eecccc-cCcc---cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 146 TMGYGL-RNVV---DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 146 ~~~~~l-~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
++...- ...+ ....+++.+.+.|+|||.+++..+..
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 975311 1111 13689999999999999998765443
No 135
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.42 E-value=1.7e-12 Score=105.80 Aligned_cols=110 Identities=23% Similarity=0.354 Sum_probs=79.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-------cCCCeeEEEccCCCCC----C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-------CYKNIEWVEGDALDLP----F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-------~~~~~~~~~~d~~~~~----~ 137 (257)
++.+|||+|||-|..+.-+... .-..++|+|++...++.|+++++..... ..-...++.+|..... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7789999999999988888765 3469999999999999999998432211 0123567888876531 2
Q ss_pred CC--CcccEEEecccccCc----ccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 138 SD--CFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 138 ~~--~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
++ ..||+|-|.+++|+. +....+|+++.+.|+|||.++...+.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 33 589999999999987 23566899999999999999877654
No 136
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=8.5e-12 Score=106.80 Aligned_cols=120 Identities=25% Similarity=0.318 Sum_probs=93.0
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP- 136 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~- 136 (257)
...+...+...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++++..+. .++.++++|..+..
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHE 315 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccc
Confidence 34455566777888999999999999999999865667999999999999999999876543 36899999998753
Q ss_pred -CCCCcccEEEecccccC------ccc----------------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 -FSDCFFDAITMGYGLRN------VVD----------------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~------~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
++ ++||+|++...... .++ ...+|..+.+.|||||.++..+...
T Consensus 316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred hhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 33 68999998643211 111 1357999999999999998766554
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.41 E-value=3.1e-12 Score=99.94 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=91.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~- 136 (257)
+.+..+....++.+|||+|||+|..+..++...++..+++++|.++++++.|+++++..+.. .+++++.+|+.+. +
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~--~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD--HKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHH
Confidence 33444455566789999999999999999887666779999999999999999999876654 5799999999763 1
Q ss_pred ----CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 ----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 ----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.+.++||+|++... -+.....+..+.+.|+|||.+++.+..
T Consensus 136 l~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 12468999998542 234567889999999999998775533
No 138
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.39 E-value=1.8e-11 Score=93.26 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=105.9
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhh---hhHHHHHHHHHhhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCC
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSF---GQHRIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 103 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s 103 (257)
++...++|..-...++.+...... .+...-...+.+.+.. +....|.|+|||.+.++. . ....|+.+|+-
T Consensus 135 s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~ 208 (325)
T KOG3045|consen 135 SSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---S---ERHKVHSFDLV 208 (325)
T ss_pred cHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh---c---cccceeeeeee
Confidence 345555666554444443322211 1111112334444433 456689999999998876 1 24589999984
Q ss_pred hhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 104 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
+ .+-.++.+|+.+.|+++++.|++++..+|.- .+...++++++|+|++||.++|.+...
T Consensus 209 a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S-- 267 (325)
T KOG3045|consen 209 A------------------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS-- 267 (325)
T ss_pred c------------------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh--
Confidence 4 4778899999999999999999998766553 478889999999999999999987542
Q ss_pred chhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 184 QPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
++-+...+...|...||.+.....
T Consensus 268 -------------------------------------Rf~dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 268 -------------------------------------RFSDVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred -------------------------------------hcccHHHHHHHHHHcCCeeeehhh
Confidence 344667888999999998665443
No 139
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.37 E-value=9.9e-12 Score=92.61 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=81.2
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 139 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (257)
.+...+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++... ++++++++|+.++++++
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~-----~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAA-----DNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccC-----CCEEEEECchhcCCccc
Confidence 3455566777889999999999999999987 468999999999999999887531 58999999999987766
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhc--ccCCCEEEEE
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRV--LKPGSRISVL 177 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~--Lk~gG~l~~~ 177 (257)
.++|.|+++..++.. ...+.++.+. +.++|.+++.
T Consensus 76 ~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 76 LQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 679999987765532 2334444432 3466777554
No 140
>PRK03612 spermidine synthase; Provisional
Probab=99.36 E-value=1.1e-11 Score=107.73 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=81.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh--hhhhhh--ccCCCeeEEEccCCCC-CCCCCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSK--ACYKNIEWVEGDALDL-PFSDCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~--~~~~~~~~~~~d~~~~-~~~~~~~ 142 (257)
+++.+|||+|||+|..+..++++ ++..+++++|+++++++.++++ +..... -..++++++.+|..+. ...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999999875 3337999999999999999984 322111 0126899999998863 2234789
Q ss_pred cEEEecccccCccc-----HHHHHHHHHhcccCCCEEEEEe
Q 025144 143 DAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 143 D~v~~~~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|+|++.......+. ..++++.+++.|||||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99999754333222 2457899999999999997654
No 141
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.34 E-value=9.6e-11 Score=93.79 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=80.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCC-CCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~~D~v~ 146 (257)
.+.+||+||||+|..+..+++.. +..+++++|+++++++.+++.+..... ...++++++..|.... ...+++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34599999999999999888762 456899999999999999987654321 1125788888887552 12246899999
Q ss_pred ecccccCcc--c--HHHHHHHHHhcccCCCEEEEE
Q 025144 147 MGYGLRNVV--D--KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 147 ~~~~l~~~~--~--~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+......-+ . ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 866532221 1 357789999999999999775
No 142
>PLN02366 spermidine synthase
Probab=99.34 E-value=1e-10 Score=94.60 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=82.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCCC--CCCCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLP--FSDCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~~--~~~~~~D~ 144 (257)
+.+.+||+||||.|..+..+++. ++..+++.+|+++.+++.+++.+..... -..++++++.+|....- .++++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45679999999999999999876 3346899999999999999998754211 11268999999976431 23568999
Q ss_pred EEecccccCccc----HHHHHHHHHhcccCCCEEEEE
Q 025144 145 ITMGYGLRNVVD----KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 145 v~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|++...-...+. -..+++.+++.|+|||.++..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 998654332221 256799999999999998654
No 143
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.33 E-value=4.4e-11 Score=91.09 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=87.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-----CCCC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-----FSDC 140 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~ 140 (257)
.....+|||||+++|..+..+++.++++.+++.+|.+++..+.|++.++..+.. .+++++.+|..+. + .+.+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~--~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD--DRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG--GGEEEEES-HHHHHHHHHHTTTTT
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC--CcEEEEEeccHhhHHHHHhccCCC
Confidence 345569999999999999999998877789999999999999999999876654 6899999998763 1 1135
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+||+|++... -.+....++.+.+.|+|||.+++-+..
T Consensus 121 ~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 121 QFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp SEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred ceeEEEEccc---ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 8999998663 345677888899999999999776533
No 144
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.30 E-value=3.1e-11 Score=94.89 Aligned_cols=121 Identities=23% Similarity=0.356 Sum_probs=90.2
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc---CCCeeEEEccC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC---YKNIEWVEGDA 132 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~~~d~ 132 (257)
.|.+..+...-..++..++|+|||-|..++.+.+. .-.+++++|++...+++|++++....... .-...++.+|.
T Consensus 104 NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 104 NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred HHHHHHHHHHHhccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 34444444444567789999999999988887665 23589999999999999999987544321 11367888888
Q ss_pred CCC------CCCCCcccEEEecccccCc----ccHHHHHHHHHhcccCCCEEEEEe
Q 025144 133 LDL------PFSDCFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 133 ~~~------~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
... ++++.+||+|-|.+++|+. .....+|+++.+.|+|||+++-..
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 753 2344559999999999966 246778999999999999996543
No 145
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.29 E-value=3.4e-11 Score=91.64 Aligned_cols=118 Identities=18% Similarity=0.265 Sum_probs=93.9
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE-ccCCCC-C
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDL-P 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~-~ 136 (257)
..+..++...+.++|||||.+.|..+..++..++.+.+++.+|.++++.+.|++++++.+.. +++..+. +|..+. .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~--~~i~~~~~gdal~~l~ 126 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD--DRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEEecCcHHHHHH
Confidence 44444556667889999999999999999999854779999999999999999999887765 5688888 466542 2
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
...++||+|++.. .-.+.+..++.+.++|+|||.+++-+...
T Consensus 127 ~~~~~~fDliFIDa---dK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 127 RLLDGSFDLVFIDA---DKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred hccCCCccEEEEeC---ChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 3468999999754 23456788999999999999998765444
No 146
>PLN02476 O-methyltransferase
Probab=99.28 E-value=4.1e-11 Score=94.81 Aligned_cols=118 Identities=12% Similarity=0.114 Sum_probs=93.5
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~- 136 (257)
+.+..+....+..+|||||+++|..+..++...+++.+++.+|.+++..+.|+++++..+.. .+++++.+|+.+. +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~--~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS--HKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHH
Confidence 44444555666789999999999999999988766778999999999999999999877654 6899999998663 1
Q ss_pred C----CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 F----SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 ~----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+ ..++||+|++... -.+....++.+.+.|+|||.+++-+..+
T Consensus 186 l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred HHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 1 1368999998653 3356778899999999999997765443
No 147
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.28 E-value=1.2e-10 Score=99.63 Aligned_cols=115 Identities=19% Similarity=0.323 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+.+.+..++...++.+|||+|||+|.++..+++. ..+++++|+|++|++.|+++++..+. .++.++++|+.
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~---~~v~~~~~d~~ 355 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGL---DNVTFYHANLE 355 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEeChH
Confidence 3455566666777778889999999999999999877 36899999999999999998765442 47999999987
Q ss_pred CC----CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 134 DL----PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 134 ~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+. ++.+++||+|+++..-.- ....++.+.+ ++|++.+++..
T Consensus 356 ~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 356 EDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred HhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 53 233567999998654332 2345555555 58888877664
No 148
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.26 E-value=4.9e-11 Score=90.43 Aligned_cols=104 Identities=25% Similarity=0.412 Sum_probs=82.2
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C--CCCCcccEEEe
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P--FSDCFFDAITM 147 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~v~~ 147 (257)
..+||||||.|.++..++.. .|+..++|+|+....+..+.++....+. .|+.++++|+..+ . ++++++|.|++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l---~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGL---KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTT---SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcc---cceEEEEccHHHHHhhcccCCchheEEE
Confidence 38999999999999999999 4899999999999999999988866543 7999999999883 2 55689999999
Q ss_pred cccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++.--+... -..++..++++|+|||.+.+.+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 877555431 3778999999999999997764
No 149
>PHA03412 putative methyltransferase; Provisional
Probab=99.25 E-value=5.6e-11 Score=91.09 Aligned_cols=96 Identities=22% Similarity=0.459 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC--CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
.+.+|||+|||+|.++..+++.+. +..+++++|+++.+++.|+++. .++.+++.|+...++ +++||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCEEEEcchhcccc-cCCccEEE
Confidence 366999999999999999987641 3468999999999999999875 468899999987654 46899999
Q ss_pred ecccccCcc--c----------HHHHHHHHHhcccCCCE
Q 025144 147 MGYGLRNVV--D----------KRKALEESFRVLKPGSR 173 (257)
Q Consensus 147 ~~~~l~~~~--~----------~~~~l~~~~~~Lk~gG~ 173 (257)
++-.+.... + ...++....+++++|+.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 987766331 1 34578888886666664
No 150
>PLN02672 methionine S-methyltransferase
Probab=99.23 E-value=2.7e-10 Score=104.76 Aligned_cols=80 Identities=24% Similarity=0.293 Sum_probs=62.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-------------ccCCCeeEEEccCCCCC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-------------ACYKNIEWVEGDALDLP 136 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~d~~~~~ 136 (257)
+.+|||+|||+|..+..+++.. +..+++++|+|+.+++.|+++...... ....+++++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4589999999999999999885 567999999999999999999865321 11147999999997743
Q ss_pred CC-CCcccEEEeccc
Q 025144 137 FS-DCFFDAITMGYG 150 (257)
Q Consensus 137 ~~-~~~~D~v~~~~~ 150 (257)
.. ..+||+|+++-.
T Consensus 198 ~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 198 RDNNIELDRIVGCIP 212 (1082)
T ss_pred cccCCceEEEEECCC
Confidence 21 236999998654
No 151
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.21 E-value=4.1e-10 Score=80.39 Aligned_cols=120 Identities=20% Similarity=0.301 Sum_probs=101.7
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.....+.+...+....+.-|||+|.|||.++..++++-.+...++.+|.|++......+.+ +..+++++|..
T Consensus 33 Ss~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~ii~gda~ 104 (194)
T COG3963 33 SSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--------PGVNIINGDAF 104 (194)
T ss_pred cHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------CCccccccchh
Confidence 4456677777788888889999999999999999988656679999999999999998887 67889999998
Q ss_pred CCC-----CCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 134 DLP-----FSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 134 ~~~-----~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
++. +....||.|++.-.+..++ ...++|+.+...|.+||.++......
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 764 4567799999988888886 35778999999999999998877663
No 152
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=2.5e-10 Score=102.74 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=81.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~ 147 (257)
++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.++++++..+... .+++++++|+.+.. ...++||+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~-~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSG-RQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-cceEEEEccHHHHHHHcCCCcCEEEE
Confidence 4679999999999999999875 2 3479999999999999999987654311 37899999987631 11468999998
Q ss_pred cccccC-----------cccHHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRN-----------VVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~-----------~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...... ..+...++..+.++|+|||.+++..
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 644211 1234667888999999999987653
No 153
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.20 E-value=3.2e-10 Score=89.73 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=112.3
Q ss_pred ccceeeeeeccCCchhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCC
Q 025144 15 RSQFRFSYGRVRCSSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ 94 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~ 94 (257)
++...+.|+++.+......+|.-+...-...+.+.++.....+.+.+......-.++.|||+|||+|-++.+.++. + .
T Consensus 123 h~~~kSvFs~rtEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqA-G-A 200 (517)
T KOG1500|consen 123 HLRPKSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQA-G-A 200 (517)
T ss_pred eccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHh-C-c
Confidence 4555677888777777777776555554555555666666677777776666667889999999999999888776 2 4
Q ss_pred ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc--ccHHHHHHHHHhcccCCC
Q 025144 95 GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGS 172 (257)
Q Consensus 95 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~Lk~gG 172 (257)
.+|++++. .+|.+.|++.++..... .+|.++.+.+++..+| ++.|+|++-.+=..+ +...+..-..++.|||.|
T Consensus 201 ~~vYAvEA-S~MAqyA~~Lv~~N~~~--~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~G 276 (517)
T KOG1500|consen 201 KKVYAVEA-SEMAQYARKLVASNNLA--DRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNG 276 (517)
T ss_pred ceEEEEeh-hHHHHHHHHHHhcCCcc--ceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCC
Confidence 58999997 56999999887654333 7899999999998876 779999974432222 223334446779999999
Q ss_pred EEE
Q 025144 173 RIS 175 (257)
Q Consensus 173 ~l~ 175 (257)
..+
T Consensus 277 kMf 279 (517)
T KOG1500|consen 277 KMF 279 (517)
T ss_pred ccc
Confidence 874
No 154
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.20 E-value=4.9e-10 Score=89.81 Aligned_cols=153 Identities=22% Similarity=0.166 Sum_probs=105.9
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
-...+|+|+|.|+.+..+...+ | ++.+++.+...+..++..+. +.+..+-+|..+- .|. -|+|++..
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P~--~daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TPK--GDAIWMKW 244 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CCC--cCeEEEEe
Confidence 4789999999999999999875 3 47888887777777666652 2478888888875 443 47999999
Q ss_pred cccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHH-HHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHH
Q 025144 150 GLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTA-IQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 226 (257)
Q Consensus 150 ~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (257)
++||+. |..++|+++++.|+|||.+++.+...+....... ...+... .+-..........-.+..
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~------------~d~lm~~~~~~Gkert~~ 312 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRD------------MDLLMLTQTSGGKERTLK 312 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeeh------------hHHHHHHHhccceeccHH
Confidence 999996 4789999999999999999999875554211110 0000000 000000001111245889
Q ss_pred HHHHHHHHcCceeeEEeeecC
Q 025144 227 DLEKLALEIGFSRAKHYELSG 247 (257)
Q Consensus 227 ~~~~~l~~~Gf~~~~~~~~~~ 247 (257)
+++.++.++||....+.....
T Consensus 313 e~q~l~~~~gF~~~~~~~~~~ 333 (342)
T KOG3178|consen 313 EFQALLPEEGFPVCMVALTAY 333 (342)
T ss_pred HHHhcchhhcCceeEEEeccC
Confidence 999999999998877665533
No 155
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.19 E-value=2.7e-10 Score=87.75 Aligned_cols=105 Identities=19% Similarity=0.297 Sum_probs=88.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAIT 146 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~ 146 (257)
...+||||||.|.++..++++ +|...++|+|+....+..+.+++.+.+. .|+.+++.|+..+- +++++.|-|+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l---~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGL---KNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCC---CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 358999999999999999999 5899999999999999999998877653 39999999998742 4556999999
Q ss_pred ecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++.--|... ...++..+.++|+|||.|.+.+
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 9887665532 3678999999999999998764
No 156
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=99.19 E-value=2.2e-09 Score=86.99 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=79.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCC---CceEEEEeCChhHHHHHHhhhh-hhhhccCCCeeE--EEccCCCC----C
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGS---QGKVIGLDFSKNQLSMASSRQD-LVSKACYKNIEW--VEGDALDL----P 136 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~--~~~d~~~~----~ 136 (257)
+.++..|+|+|||+|.-+..|++.+.+ ...|+++|+|.++++.+.+++. .. ++.+.+ +.+|+.+. +
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~----~p~l~v~~l~gdy~~~l~~l~ 149 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN----FSHVRCAGLLGTYDDGLAWLK 149 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc----CCCeEEEEEEecHHHHHhhcc
Confidence 456678999999999999888887632 3579999999999999999886 22 245544 78888652 1
Q ss_pred C--CCCcccEEEec-ccccCcc--cHHHHHHHHHh-cccCCCEEEEE
Q 025144 137 F--SDCFFDAITMG-YGLRNVV--DKRKALEESFR-VLKPGSRISVL 177 (257)
Q Consensus 137 ~--~~~~~D~v~~~-~~l~~~~--~~~~~l~~~~~-~Lk~gG~l~~~ 177 (257)
- ..+...+++.. .++.+++ +...+|+++++ .|+|||.+++.
T Consensus 150 ~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 150 RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 1 12335666654 5788885 45678999999 99999988774
No 157
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.18 E-value=4.3e-10 Score=85.11 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=74.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc---------------------------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------------------- 121 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--------------------------- 121 (257)
.+..+|||||..|.++..+++.+++. .+.|+|+++..++.|++.+.......
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45689999999999999999998654 79999999999999998764211000
Q ss_pred ------------CCCeeEEEccCCCCCCCCCcccEEEecccccCc------ccHHHHHHHHHhcccCCCEEEEE
Q 025144 122 ------------YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV------VDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 122 ------------~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~------~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..|..+...|+. .+....||+|+|..+-.|+ +.+.++++++.++|.|||+|++-
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 001111111222 1234679999986654333 24789999999999999999653
No 158
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=6.1e-09 Score=75.52 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=98.5
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
..-++|||||+|..+.+|++..+++..+.++|+++.+++...+..+..+ .++..++.|+.+- +.+++.|+++.+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~-l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSG-LRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhh-hccCCccEEEECC
Confidence 5589999999999999999998888999999999999988777654433 4688899998773 3458999999865
Q ss_pred cccCcc-----------------c----HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCc
Q 025144 150 GLRNVV-----------------D----KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 208 (257)
Q Consensus 150 ~l~~~~-----------------~----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (257)
..---+ + ..+++..+-.+|.|.|.+++.....
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~--------------------------- 171 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA--------------------------- 171 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh---------------------------
Confidence 432111 1 3566777888889999988765322
Q ss_pred hhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeee
Q 025144 209 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 245 (257)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 245 (257)
-.++++.++++..||.......-
T Consensus 172 --------------N~p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 172 --------------NKPKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred --------------cCHHHHHHHHhhcccceeEEEEE
Confidence 14568888999999977665544
No 159
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.18 E-value=6.3e-10 Score=93.22 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=79.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 144 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 144 (257)
++.+|||+|||+|.++...+.. ...+++++|.|+.+++.+++++...+.. ..++.++++|+.+.. ...++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~-~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCC-CCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 5779999999999998776543 3448999999999999999998764421 036899999997642 12468999
Q ss_pred EEecccccCcc---------cHHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVV---------DKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~---------~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
|++........ +...++....++|+|||.++....
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99876532111 234556678899999999976553
No 160
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.17 E-value=3.8e-10 Score=91.38 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=63.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-hhccCCCeeEEE-ccCCCCC----CCCCcc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVE-GDALDLP----FSDCFF 142 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~-~d~~~~~----~~~~~~ 142 (257)
.+.++||||||+|.....++... ++.+++++|+++.+++.|+++++.. +.. .++.+.. .|..... .+.+.|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~--~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN--GAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc--CcEEEEEccchhhhhhcccccCCce
Confidence 45799999999998888887764 5789999999999999999998765 232 4677754 3332221 235689
Q ss_pred cEEEecccccCc
Q 025144 143 DAITMGYGLRNV 154 (257)
Q Consensus 143 D~v~~~~~l~~~ 154 (257)
|+|+|+-.++.-
T Consensus 191 DlivcNPPf~~s 202 (321)
T PRK11727 191 DATLCNPPFHAS 202 (321)
T ss_pred EEEEeCCCCcCc
Confidence 999999887754
No 161
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=99.16 E-value=1.4e-10 Score=90.09 Aligned_cols=131 Identities=27% Similarity=0.386 Sum_probs=99.2
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
.+.+.++|+.++..+.. .....|.+....+...+.+..++|+|||.|..... .|...+.+.|++...+
T Consensus 11 qeyVh~IYd~ia~~fs~-------tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~ 78 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSA-------TRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLL 78 (293)
T ss_pred HHHhHHHHHHhhhhccc-------cccCccHHHHHHHhccCCcceeeecccCCcccCcC-----CCcceeeecchhhhhc
Confidence 35566777777766332 23444544444444556688999999999976632 2556899999988887
Q ss_pred HHHHhhhhhhhhccCCCe-eEEEccCCCCCCCCCcccEEEecccccCccc---HHHHHHHHHhcccCCCEEEEEeec
Q 025144 108 SMASSRQDLVSKACYKNI-EWVEGDALDLPFSDCFFDAITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
..+++. +. .+..+|+..+++++.+||.+++..++||+.. ...+++++.+.++|||..++..+.
T Consensus 79 ~~ak~~----------~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 79 GGAKRS----------GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred cccccC----------CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 776653 44 7899999999999999999999999999963 677899999999999997776554
No 162
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.16 E-value=4e-10 Score=92.23 Aligned_cols=110 Identities=13% Similarity=0.212 Sum_probs=77.6
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF- 137 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~- 137 (257)
+.+..++...++.+|||+|||+|.++..+++. +.+|+++|.++.+++.|+++.+..+. .+++++++|+.++..
T Consensus 163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l---~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL---TNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCHHHHHHh
Confidence 33444554445689999999999999999875 46999999999999999998865542 479999999977532
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..+.||+|++...-.-. ...+++.+ ..++|++.+++.
T Consensus 237 ~~~~~D~Vv~dPPr~G~--~~~~~~~l-~~~~~~~ivyvs 273 (315)
T PRK03522 237 QGEVPDLVLVNPPRRGI--GKELCDYL-SQMAPRFILYSS 273 (315)
T ss_pred cCCCCeEEEECCCCCCc--cHHHHHHH-HHcCCCeEEEEE
Confidence 23579999987542211 12233333 335777666554
No 163
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.15 E-value=1.2e-09 Score=82.99 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=82.0
Q ss_pred HHHHHHHHhhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 55 RIWKRMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 55 ~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
+.+++.+..++ ...++.+|||+|||+|.++..++.+. ..+++++|.++.+++.++++++..+. .++.++++|+.
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~---~~v~~~~~D~~ 112 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA---GNARVVNTNAL 112 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEEchHH
Confidence 33444444443 22456799999999999998765552 36999999999999999998876542 47899999987
Q ss_pred CC-CCCCCcccEEEecccccCcccHHHHHHHHHh--cccCCCEEEEEe
Q 025144 134 DL-PFSDCFFDAITMGYGLRNVVDKRKALEESFR--VLKPGSRISVLD 178 (257)
Q Consensus 134 ~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~Lk~gG~l~~~~ 178 (257)
+. +...++||+|+++..+.. .-...++..+.+ +|+|++.+++..
T Consensus 113 ~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 113 SFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred HHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 63 222356999999887432 123445555544 478988887654
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.15 E-value=2.5e-10 Score=89.29 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=91.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~- 136 (257)
+.+..++...+..+|||||+++|..+..++...+++.+++.+|.+++..+.|++.++..+.. .++.++.+|..+. +
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~--~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA--HKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEeccHHHHHHH
Confidence 33444445556679999999999999999988767789999999999999999999876654 6899999998763 1
Q ss_pred C-----CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 F-----SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 ~-----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+ ..++||+|++... -......++.+.+.|+|||.+++-+..
T Consensus 147 l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 1 1268999998653 334567788889999999998775443
No 165
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=4.1e-09 Score=77.25 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=66.0
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
..-.+.+|+|+|||||.++...+-. ++ .+|+++|+++++++.++++.++.. .++.++..|+.+. ...+|.+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~---~~~~dtv 112 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDF---RGKFDTV 112 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhc---CCccceE
Confidence 4455778999999999999877655 33 599999999999999999987633 6899999999987 4669999
Q ss_pred EecccccCc
Q 025144 146 TMGYGLRNV 154 (257)
Q Consensus 146 ~~~~~l~~~ 154 (257)
+++..+...
T Consensus 113 imNPPFG~~ 121 (198)
T COG2263 113 IMNPPFGSQ 121 (198)
T ss_pred EECCCCccc
Confidence 998776644
No 166
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.13 E-value=1.7e-09 Score=92.47 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=81.8
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL- 135 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 135 (257)
+...+..++...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...+. .+++++.+|+.+.
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~---~nv~~~~~d~~~~l 353 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGI---ANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCC---CceEEEeCCHHHHH
Confidence 3444555566677789999999999999999876 35899999999999999998865442 5899999998752
Q ss_pred ---CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 136 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 136 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
...+++||+|++...=..+ ...+++.+.+ ++|++.+++.
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEEc
Confidence 1234579999975542111 2455555554 7888876654
No 167
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.13 E-value=9.8e-10 Score=81.96 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=75.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcc
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFF 142 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 142 (257)
..++.+|||+|||+|..+..++... ...+|+..|.++ .++.++.+++........++.+...|-.+.. ...++|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 4567799999999999999888773 457999999988 8898888876543111257788877765421 234689
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
|+|+...+++.-.....+++.+.++|+++|.+++....+
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999999988888999999999999999876665444
No 168
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.13 E-value=3.8e-10 Score=90.31 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
....++..+...-+.-.+++|||+|||||-++.+.++. + -.+|+++|.|. +.+.|.+.+...+.. .-++++++.+
T Consensus 44 Rt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akA-G-A~~V~aVe~S~-ia~~a~~iv~~N~~~--~ii~vi~gkv 118 (346)
T KOG1499|consen 44 RTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKA-G-ARKVYAVEASS-IADFARKIVKDNGLE--DVITVIKGKV 118 (346)
T ss_pred hHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHh-C-cceEEEEechH-HHHHHHHHHHhcCcc--ceEEEeecce
Confidence 45555666666656677889999999999999999887 3 45899999866 558888887655443 4589999999
Q ss_pred CCCCCCCCcccEEEecccccCc---ccHHHHHHHHHhcccCCCEEE
Q 025144 133 LDLPFSDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
++..+|.+++|+|++-++=+.+ .-+...|-.=-+.|+|||.++
T Consensus 119 Edi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 119 EDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 9987777899999985542222 234556666667999999885
No 169
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.12 E-value=5.1e-10 Score=84.26 Aligned_cols=159 Identities=24% Similarity=0.269 Sum_probs=108.1
Q ss_pred HHHHHHHHHhh--hCCCCCCeEEEecCCCChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc
Q 025144 54 HRIWKRMAVSW--SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130 (257)
Q Consensus 54 ~~~~~~~~~~~--~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (257)
...|....... .+...+.+|||.+.|-|..++..+++ ++ +|..++.++..++.|.-+-=..+... .+++++.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~-~~i~iilG 192 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFE-IAIKIILG 192 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccc-cccEEecc
Confidence 33444444333 34556889999999999999999887 55 99999999999998876631111111 36899999
Q ss_pred cCCCC--CCCCCcccEEEeccc-ccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhcc
Q 025144 131 DALDL--PFSDCFFDAITMGYG-LRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG 205 (257)
Q Consensus 131 d~~~~--~~~~~~~D~v~~~~~-l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (257)
|..+. .+++.+||+|+-... +..... -.++.++++++|||||.++-..-++...
T Consensus 193 D~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r--------------------- 251 (287)
T COG2521 193 DAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR--------------------- 251 (287)
T ss_pred cHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------------------
Confidence 99875 478899999984222 111111 3678999999999999996443222110
Q ss_pred CCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCcee
Q 025144 206 YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250 (257)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~ 250 (257)
| +..--...+.+.|+++||.+++...-.+|+.
T Consensus 252 ------y-------rG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~ 283 (287)
T COG2521 252 ------Y-------RGLDLPKGVAERLRRVGFEVVKKVREALGVV 283 (287)
T ss_pred ------c-------ccCChhHHHHHHHHhcCceeeeeehhccceE
Confidence 0 0112346788899999999888776655543
No 170
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.9e-09 Score=85.75 Aligned_cols=120 Identities=28% Similarity=0.350 Sum_probs=97.8
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-c
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-D 131 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d 131 (257)
....+.+.+..+....+|..|||-=||||.++....-. +.+++|.|++..|+.-++.+++..+. ....+... |
T Consensus 181 ~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i---~~~~~~~~~D 254 (347)
T COG1041 181 MDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGI---EDYPVLKVLD 254 (347)
T ss_pred cCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCc---CceeEEEecc
Confidence 35567788888999999999999999999999887643 78999999999999999999987653 35555555 9
Q ss_pred CCCCCCCCCcccEEEecccccCcc-----c----HHHHHHHHHhcccCCCEEEEEe
Q 025144 132 ALDLPFSDCFFDAITMGYGLRNVV-----D----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 132 ~~~~~~~~~~~D~v~~~~~l~~~~-----~----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+..++++++++|.|++.....--. . ...+|+.+.++||+||.+++..
T Consensus 255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 999999888899999865433221 1 4677999999999999998764
No 171
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=6.7e-09 Score=80.18 Aligned_cols=123 Identities=19% Similarity=0.196 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhhCC---CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc
Q 025144 54 HRIWKRMAVSWSGA---KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 130 (257)
Q Consensus 54 ~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (257)
.+.|.+++...+.- ..+..|||+|||+|..+..++..+ +...++++|.|+.++..|.++....... +++.+++.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~l~--g~i~v~~~ 206 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQRLKLS--GRIEVIHN 206 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHHHHhhc--CceEEEec
Confidence 55666666654432 234479999999999999999987 5789999999999999999998876655 67888866
Q ss_pred cCCCC-----CCCCCcccEEEecccccCccc--------------------------HHHHHHHHHhcccCCCEEEEEee
Q 025144 131 DALDL-----PFSDCFFDAITMGYGLRNVVD--------------------------KRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 131 d~~~~-----~~~~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++.- +...+++|+++++-..-.-+| ...++.-..+.|+|||.+.+...
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 55532 244689999998765322211 23345667788999998866543
No 172
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.07 E-value=6.9e-09 Score=77.78 Aligned_cols=114 Identities=28% Similarity=0.360 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCce---------EEEEeCChhHHHHHHhhhhhhhhccCCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGK---------VIGLDFSKNQLSMASSRQDLVSKACYKN 124 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~---------v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 124 (257)
...+...++.+....++..|||.-||+|.+.+..+... .... +.|.|+++++++.++++++..+.. ..
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~--~~ 89 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE--DY 89 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C--GG
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcccC--Cc
Confidence 44566667777778888999999999999998876664 3334 899999999999999999776543 46
Q ss_pred eeEEEccCCCCCCCCCcccEEEecccccCcc----c----HHHHHHHHHhcccC
Q 025144 125 IEWVEGDALDLPFSDCFFDAITMGYGLRNVV----D----KRKALEESFRVLKP 170 (257)
Q Consensus 125 ~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~----~----~~~~l~~~~~~Lk~ 170 (257)
+.+.+.|+.++++.++++|.|+++.....-. + ...+++.+.+++++
T Consensus 90 i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 90 IDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred eEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 8999999999886678999999987766442 1 24457888888888
No 173
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.06 E-value=5.5e-09 Score=78.52 Aligned_cols=120 Identities=21% Similarity=0.248 Sum_probs=91.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC---CCCcccEEEe
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCFFDAITM 147 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~~ 147 (257)
-++|||||=+......-. +-.+|+.||+++ ....+.+.|+.+.|. +.+.||+|.+
T Consensus 53 lrlLEVGals~~N~~s~~----~~fdvt~IDLns------------------~~~~I~qqDFm~rplp~~~~e~FdvIs~ 110 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS----GWFDVTRIDLNS------------------QHPGILQQDFMERPLPKNESEKFDVISL 110 (219)
T ss_pred ceEEeecccCCCCccccc----CceeeEEeecCC------------------CCCCceeeccccCCCCCCcccceeEEEE
Confidence 599999997655444332 234799999976 356688899988765 3678999999
Q ss_pred cccccCcccH---HHHHHHHHhcccCCCE-----EEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 148 GYGLRNVVDK---RKALEESFRVLKPGSR-----ISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 148 ~~~l~~~~~~---~~~l~~~~~~Lk~gG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
+.+|.+++++ -.+++++++.|+|+|. |+++-+.. . ...
T Consensus 111 SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-C---------------------------------v~N 156 (219)
T PF11968_consen 111 SLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP-C---------------------------------VTN 156 (219)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch-H---------------------------------hhc
Confidence 9999999864 6689999999999999 76654221 0 012
Q ss_pred hccCCHHHHHHHHHHcCceeeEEeeec
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYELS 246 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 246 (257)
.++++.+.|.++++.-||+.++.+...
T Consensus 157 SRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 157 SRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred ccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 357789999999999999998876553
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.05 E-value=1.9e-09 Score=85.82 Aligned_cols=89 Identities=21% Similarity=0.324 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...+.+.+...+...++.+|||||||+|.++..+++. ..+++++|+++.+++.+++++... +++.++++|+.
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~~-----~~v~ii~~D~~ 85 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIAA-----GNVEIIEGDAL 85 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhccC-----CCEEEEEeccc
Confidence 3445556666667778889999999999999999987 358999999999999999887531 58999999999
Q ss_pred CCCCCCCcccEEEeccccc
Q 025144 134 DLPFSDCFFDAITMGYGLR 152 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~ 152 (257)
+.+++ .+|.|+++...+
T Consensus 86 ~~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 86 KVDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred cCCch--hceEEEEcCCcc
Confidence 87654 489999877654
No 175
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.04 E-value=1.3e-08 Score=81.06 Aligned_cols=110 Identities=14% Similarity=0.081 Sum_probs=86.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc-CCCeeEEEccCCCCCC-CCCccc
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC-YKNIEWVEGDALDLPF-SDCFFD 143 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~~~-~~~~~D 143 (257)
+..+ ++||-||.|.|..++.+++.. +..+++.+|+++..++.+++.+....... .++++++..|..++-- ..++||
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 4444 699999999999999999984 56799999999999999999886554222 3799999999987531 234799
Q ss_pred EEEecccccCcc----cHHHHHHHHHhcccCCCEEEEE
Q 025144 144 AITMGYGLRNVV----DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 144 ~v~~~~~l~~~~----~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|++...-..=+ --..+++.+++.|+++|+++..
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999855433100 1278899999999999999776
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.04 E-value=1.7e-09 Score=86.71 Aligned_cols=87 Identities=24% Similarity=0.309 Sum_probs=68.8
Q ss_pred HHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 56 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
...+.+...+...++.+|||+|||+|.++..+++.. .+++++|+++.|++.+++++.. +++.++++|+.++
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~~ 99 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE------DNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc------CceEEEEChhhcC
Confidence 344556666677788899999999999999999883 3899999999999999887632 5899999999987
Q ss_pred CCCCCcccEEEecccc
Q 025144 136 PFSDCFFDAITMGYGL 151 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l 151 (257)
++++-.+|.|+++...
T Consensus 100 ~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 100 DLSELQPLKVVANLPY 115 (272)
T ss_pred CHHHcCcceEEEeCCc
Confidence 6543225788776553
No 177
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.03 E-value=1.7e-09 Score=86.35 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=80.8
Q ss_pred CCeEEEecCCCChh----HHHHHHHhC---CCceEEEEeCChhHHHHHHhhhhh-h------------------------
Q 025144 70 GDNVLDVCCGSGDL----SFLLSEQVG---SQGKVIGLDFSKNQLSMASSRQDL-V------------------------ 117 (257)
Q Consensus 70 ~~~vLdiG~G~G~~----~~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~-~------------------------ 117 (257)
.-+|...||+||.- +..+.+..+ ...+|+|+|+|+.+++.|++-.-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 46999999999963 333444321 135899999999999999874200 0
Q ss_pred ---hhccCCCeeEEEccCCCCCC-CCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEe
Q 025144 118 ---SKACYKNIEWVEGDALDLPF-SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 118 ---~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.......+.|.+.|+.+.++ +.+.||+|+|.+++.+++ ...++++++++.|+|||.|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01112467889999987543 257899999999999995 47889999999999999987653
No 178
>PRK00536 speE spermidine synthase; Provisional
Probab=99.02 E-value=9.4e-09 Score=80.89 Aligned_cols=100 Identities=18% Similarity=0.023 Sum_probs=75.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+.+++||=||+|.|..++.+++. +. +|+.+|+++++++.+++.+..... -..++++++.. +.+ ...++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEE
Confidence 44579999999999999999987 43 999999999999999996644321 11357777652 211 1236899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+... ....+.+.+++.|+|||.++...
T Consensus 145 vDs~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 145 CLQE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EcCC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 8643 23678899999999999997653
No 179
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.02 E-value=1.1e-08 Score=87.22 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=91.8
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDA 144 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 144 (257)
...++.+|||++||+|.-+.++++.+++...++++|+++.-++.+++++++.+. .++.+...|...+. ...+.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhchhhcCe
Confidence 667889999999999999999999987667999999999999999999987654 57888999987653 22467999
Q ss_pred EEecccc------cCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 145 ITMGYGL------RNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 145 v~~~~~l------~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
|++.... ..-++ ..++|.+..+.|||||.|+..+.+.....
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eE 249 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREE 249 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHH
Confidence 9953332 22121 25678999999999999988876654433
No 180
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.00 E-value=4.6e-09 Score=79.45 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCChh----HHHHHHHh---CC-CceEEEEeCChhHHHHHHhhh------hhhh----------------
Q 025144 69 TGDNVLDVCCGSGDL----SFLLSEQV---GS-QGKVIGLDFSKNQLSMASSRQ------DLVS---------------- 118 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~----~~~l~~~~---~~-~~~v~~~D~s~~~~~~a~~~~------~~~~---------------- 118 (257)
+.-+|...||++|.- +..+.+.. .+ ..+++|+|+|+.+++.|++-. ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 456999999999963 33334411 11 359999999999999998621 1000
Q ss_pred ---hccCCCeeEEEccCCCCCCCCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEE
Q 025144 119 ---KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 119 ---~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.....++.|.+.|+.+.+.+.+.||+|+|.+++-+++. ..++++.+++.|+|||.|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01124788999999884445688999999999999964 588899999999999999875
No 181
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=99.00 E-value=3.6e-08 Score=77.63 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=101.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh---hh---------------------------
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL---VS--------------------------- 118 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~--------------------------- 118 (257)
...+||--|||.|+++-.++.. +..+.+.|.|--|+-..+-.+.. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3569999999999999999977 68999999999886554432211 00
Q ss_pred -------hccCCCeeEEEccCCCCCCCC---CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 119 -------KACYKNIEWVEGDALDLPFSD---CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 119 -------~~~~~~~~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
.....++.+..+|+.+.-.++ ++||+|+..+.+...++....++.|.++|||||..+=..+-.-.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh----- 207 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYH----- 207 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCcccc-----
Confidence 001235667777777654333 79999999988888889999999999999999976432211000
Q ss_pred HHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEee
Q 025144 189 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
.... .... ...--++.+|+..++++.||++++...
T Consensus 208 -------------~~~~-~~~~-------~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 -------------FEPM-SIPN-------EMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -------------CCCC-CCCC-------CcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000 0000 000135889999999999999987655
No 182
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.00 E-value=1.1e-08 Score=86.95 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=73.3
Q ss_pred CCeEEEecCCCChhHHHHHHH---hCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQ---VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+..|||+|||+|-++...++. .+...+|+++|-++.+....+++++..+.. ++++++++|++++..+ +++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~--~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG--DKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT--TTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC--CeEEEEeCcccCCCCC-CceeEEE
Confidence 568999999999998766554 122459999999998887776665444433 6899999999998765 5899999
Q ss_pred ec--ccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 147 MG--YGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 147 ~~--~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
+= +.+..-+-....|....+.|||||.++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 72 222222334567888999999998874
No 183
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.99 E-value=3.5e-09 Score=85.33 Aligned_cols=91 Identities=24% Similarity=0.317 Sum_probs=72.1
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+...+.......++.+|||||||+|.++..+++. ..+++++|+++.+++.+++++...+. .++++++++|+.+
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~--~~~v~ii~~Dal~ 96 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPL--ASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECCHhh
Confidence 345556666677788899999999999999999876 35899999999999999988764321 1589999999987
Q ss_pred CCCCCCcccEEEeccccc
Q 025144 135 LPFSDCFFDAITMGYGLR 152 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~ 152 (257)
.+. ..+|.|+++...+
T Consensus 97 ~~~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 97 TEF--PYFDVCVANVPYQ 112 (294)
T ss_pred hcc--cccCEEEecCCcc
Confidence 654 3689988765544
No 184
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.98 E-value=2.2e-08 Score=74.97 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhh----CCCCCC-eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEE
Q 025144 54 HRIWKRMAVSWS----GAKTGD-NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 128 (257)
Q Consensus 54 ~~~~~~~~~~~~----~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 128 (257)
.+.|.+.+..-+ ...... +++|||+|.|..++.++=.+ |..+++.+|.+..-+...+......+. .|++++
T Consensus 28 ~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~ 103 (184)
T PF02527_consen 28 EEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVI 103 (184)
T ss_dssp HHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEE
Confidence 455555554422 222333 89999999999999998775 788999999999888888877766654 589999
Q ss_pred EccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 129 EGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 129 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+..+++ ....++||+|++..+ .....+++-+...+++||.+++.-
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARAV----APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred Eeeecc-cccCCCccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 999998 434688999998664 356788999999999999987753
No 185
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.98 E-value=2.6e-08 Score=77.89 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=94.7
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCC--ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+.+..+.....-...||||||- -...-.+++...|.++|..+|.+|..+..++..+..... ....++++|+.+
T Consensus 56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~---g~t~~v~aD~r~ 132 (267)
T PF04672_consen 56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR---GRTAYVQADLRD 132 (267)
T ss_dssp HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT---SEEEEEE--TT-
T ss_pred HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC---ccEEEEeCCCCC
Confidence 333333333333556899999994 456778888888999999999999999999888765421 238899999998
Q ss_pred CC-----------CCCCcccEEEecccccCcc---cHHHHHHHHHhcccCCCEEEEEeecCCCchhH-HHHHHHHHhhhh
Q 025144 135 LP-----------FSDCFFDAITMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVV 199 (257)
Q Consensus 135 ~~-----------~~~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 199 (257)
.. +.-+..=.+++..++|+++ ++..+++.++..|.||+.|++........+.. ......+...
T Consensus 133 p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~-- 210 (267)
T PF04672_consen 133 PEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQA-- 210 (267)
T ss_dssp HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcC--
Confidence 42 1112333577788899885 58999999999999999999988776544332 2222222211
Q ss_pred hhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeE
Q 025144 200 VPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK 241 (257)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 241 (257)
.....+.+.+++..+|. ||+.++
T Consensus 211 -----------------~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 211 -----------------GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp -----------------CS----B-HHHHHHCCT--TSEE-T
T ss_pred -----------------CCCceecCHHHHHHHcC--CCccCC
Confidence 01124669999999987 888765
No 186
>PLN02823 spermine synthase
Probab=98.97 E-value=1.8e-08 Score=82.47 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=79.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCC-CCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~~D~v~ 146 (257)
...+||.||+|.|..+..+++. .+..+++++|+++++++.+++.+..... -..++++++.+|.... ....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4569999999999999999876 2456899999999999999988753211 1126899999999874 23357899999
Q ss_pred ecccccCc-cc------HHHHHH-HHHhcccCCCEEEEE
Q 025144 147 MGYGLRNV-VD------KRKALE-ESFRVLKPGSRISVL 177 (257)
Q Consensus 147 ~~~~l~~~-~~------~~~~l~-~~~~~Lk~gG~l~~~ 177 (257)
+... ... .. -..+++ .+++.|+|||++++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8632 111 00 245677 899999999998654
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.96 E-value=1.7e-08 Score=80.10 Aligned_cols=88 Identities=23% Similarity=0.303 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+.+.+...+...++.+|||+|||+|.++..+++.. ..++++|+++.+++.+++++.. .+++.++++|+.+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~ 86 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhc
Confidence 3445566666677788899999999999999999883 4699999999999999887643 1689999999998
Q ss_pred CCCCCCccc---EEEeccccc
Q 025144 135 LPFSDCFFD---AITMGYGLR 152 (257)
Q Consensus 135 ~~~~~~~~D---~v~~~~~l~ 152 (257)
.+++ .+| +|+++..++
T Consensus 87 ~~~~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 87 VDLP--DFPKQLKVVSNLPYN 105 (253)
T ss_pred CChh--HcCCcceEEEcCChh
Confidence 7654 466 777665543
No 188
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.7e-09 Score=76.50 Aligned_cols=106 Identities=25% Similarity=0.336 Sum_probs=83.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCC-CceEEEEeCChhHHHHHHhhhhhhh-----hc--cCCCeeEEEccCCCCCCC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVS-----KA--CYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~-----~~--~~~~~~~~~~d~~~~~~~ 138 (257)
+.|+.+.||+|+|+|.++..++..++. +...+|||.-++.++.+++++.... .. ...++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 678999999999999999998877643 3345999999999999999876533 11 124788999999987777
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+||.|.+.... ....+++...|++||.+++..
T Consensus 160 ~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence 7899999997543 344556778889999998753
No 189
>PRK04148 hypothetical protein; Provisional
Probab=98.92 E-value=5.1e-08 Score=68.39 Aligned_cols=107 Identities=11% Similarity=0.007 Sum_probs=73.3
Q ss_pred HHHHhhhCCCCCCeEEEecCCCCh-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
+.+...+....+.+|||||||+|. .+..|.+. +.+|+++|+++..++.++++ .+.++.+|+.+.++
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence 334444444456799999999996 77777654 68999999999998888664 46899999998653
Q ss_pred C-CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 138 S-DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 138 ~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
. -+.+|+|++... -+++...+.++.+ +-|.-+++..+....
T Consensus 73 ~~y~~a~liysirp---p~el~~~~~~la~--~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 73 EIYKNAKLIYSIRP---PRDLQPFILELAK--KINVPLIIKPLSGEE 114 (134)
T ss_pred HHHhcCCEEEEeCC---CHHHHHHHHHHHH--HcCCCEEEEcCCCCC
Confidence 2 356999998553 2244444444444 335667776655433
No 190
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.91 E-value=1.5e-08 Score=84.78 Aligned_cols=108 Identities=10% Similarity=0.202 Sum_probs=78.4
Q ss_pred HhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCC
Q 025144 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDC 140 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 140 (257)
..++...++.+|||++||+|.++..++.. +.+++++|.++.+++.++++.+..+. .++.++.+|+.+... ..+
T Consensus 226 ~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~~~~~ 299 (374)
T TIGR02085 226 RQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFATAQMS 299 (374)
T ss_pred HHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHHhcCC
Confidence 33444345679999999999999999854 46899999999999999998865542 479999999976421 124
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+||+|++.-.-... ...++..+. .++|++.+++..
T Consensus 300 ~~D~vi~DPPr~G~--~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 300 APELVLVNPPRRGI--GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCEEEECCCCCCC--cHHHHHHHH-hcCCCeEEEEEe
Confidence 69999987653322 244455554 468888777654
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.89 E-value=1.2e-08 Score=88.51 Aligned_cols=106 Identities=11% Similarity=0.096 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~ 146 (257)
.+..+||||||.|.++..++.. +|...++|+|+....+..+.++....+ ..|+.++..|+..+ .++++++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 4668999999999999999999 588999999999998888877765443 26888888887543 26778999999
Q ss_pred ecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 147 MGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 147 ~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++.--|... -..++..+++.|||||.+.+.+
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 9887666532 3778999999999999997754
No 192
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.88 E-value=8.1e-08 Score=75.83 Aligned_cols=109 Identities=21% Similarity=0.214 Sum_probs=80.9
Q ss_pred CCeEEEecCCCCh----hHHHHHHHhC----CCceEEEEeCChhHHHHHHhhh-h------hhh-----------h----
Q 025144 70 GDNVLDVCCGSGD----LSFLLSEQVG----SQGKVIGLDFSKNQLSMASSRQ-D------LVS-----------K---- 119 (257)
Q Consensus 70 ~~~vLdiG~G~G~----~~~~l~~~~~----~~~~v~~~D~s~~~~~~a~~~~-~------~~~-----------~---- 119 (257)
.-+|...||+||. ++..+.+..+ ...+|+++|+|..+++.|+.-. . ..+ .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999996 4455555542 2469999999999999998532 1 000 0
Q ss_pred ----ccCCCeeEEEccCCCCCCCCCcccEEEecccccCccc--HHHHHHHHHhcccCCCEEEEEe
Q 025144 120 ----ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 120 ----~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+.|.+.|+...+...+.||+|+|-+++-+++. ..++++.++..|+|||.|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 0113567777887765534577999999999999964 6788999999999999998753
No 193
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.87 E-value=5.4e-08 Score=73.60 Aligned_cols=105 Identities=21% Similarity=0.154 Sum_probs=74.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-C-CC-Cccc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F-SD-CFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~-~~~D 143 (257)
-.+.+|||++||+|.++..++.+ + ..+++++|.++.+++.++++++..+.. .++.+++.|+... . . .. ..+|
T Consensus 48 ~~g~~vLDLfaGsG~lglea~sr-g-a~~v~~vE~~~~a~~~~~~N~~~~~~~--~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSR-G-AKVAFLEEDDRKANQTLKENLALLKSG--EQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCc--ccEEEEehhHHHHHHHhhccCCCce
Confidence 35779999999999999999987 2 248999999999999999988765432 4688999999542 1 1 12 2478
Q ss_pred EEEecccccCcccHHHHHHHHH--hcccCCCEEEEE
Q 025144 144 AITMGYGLRNVVDKRKALEESF--RVLKPGSRISVL 177 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~--~~Lk~gG~l~~~ 177 (257)
+|++...+.. .....++..+. .+|+++|.+++-
T Consensus 124 vv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 124 VIYLDPPFFN-GALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred EEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 8887665543 23344444443 367888877553
No 194
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.87 E-value=7.2e-08 Score=77.24 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
.+.+|||+|+|+|..+..+.+.++...+++++|.|+.|++.++......... ...........+. .+....|+|++.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN--RNAEWRRVLYRDF-LPFPPDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc--ccchhhhhhhccc-ccCCCCcEEEEe
Confidence 4569999999999888777777654568999999999999998876543211 1111111111111 111234999999
Q ss_pred ccccCccc--HHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 149 YGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 149 ~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
++|..+++ ...+++++.+.+.+ .|++++...+..
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 99998875 45556666665554 888888776553
No 195
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.86 E-value=9.8e-08 Score=75.20 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=79.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-ccCCCeeEEEccCCCCC-CCCC-cccEE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLP-FSDC-FFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~~~-~~~~-~~D~v 145 (257)
.+.+||-||.|.|..+..+.+. .+..+++++|+++.+++.+++.+..... ...++++++..|...+- -..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 5679999999999999999876 3456999999999999999987654321 12368999999997642 1233 89999
Q ss_pred EecccccCccc----HHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++...-..-+. -..+++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 97544321111 2678999999999999998765
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.84 E-value=1.2e-08 Score=81.73 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=77.6
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...++..+.+.++..++|++||.|..+..+++.+++..+|+|+|.++++++.+++++.. . .++.++++|+.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~----~ri~~i~~~f~~l~ 81 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F----GRFTLVHGNFSNLK 81 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C----CcEEEEeCCHHHHH
Confidence 445566666777888999999999999999999975568999999999999999988754 1 68999999998763
Q ss_pred --CCCC--cccEEEecccccCc--ccHHHHH
Q 025144 137 --FSDC--FFDAITMGYGLRNV--VDKRKAL 161 (257)
Q Consensus 137 --~~~~--~~D~v~~~~~l~~~--~~~~~~l 161 (257)
.+.+ ++|.|++......+ ++..+-+
T Consensus 82 ~~l~~~~~~vDgIl~DLGvSs~Qld~~~RGF 112 (296)
T PRK00050 82 EVLAEGLGKVDGILLDLGVSSPQLDDAERGF 112 (296)
T ss_pred HHHHcCCCccCEEEECCCccccccCCCcCCc
Confidence 2222 79999987665433 4444443
No 197
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.83 E-value=5.2e-08 Score=80.85 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
++..++.+.... .+++||++-|=||.++.+.+.. ++ +|+.+|.|...++.|+++++..+... .+..++++|+
T Consensus 205 qR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~-~~~~~i~~Dv 277 (393)
T COG1092 205 QRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDG-DRHRFIVGDV 277 (393)
T ss_pred hHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCc-cceeeehhhH
Confidence 444444444443 3889999999999999998865 55 99999999999999999987654321 4689999999
Q ss_pred CCCC----CCCCcccEEEeccccc---------CcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 133 LDLP----FSDCFFDAITMGYGLR---------NVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 133 ~~~~----~~~~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.++- -...+||+|++...-. -..+...++..+.++|+|||.+++.....
T Consensus 278 f~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 278 FKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred HHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 8752 3345899999843311 11245778999999999999998876443
No 198
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=4.9e-07 Score=70.01 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=89.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
.++...+.+.|+.+|+|-|.|+|.++..+++.++|..+++-+|+...-.+.|.+.++..+.+ +++.+..-|+...-+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~--~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG--DNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC--cceEEEEeecccCCcc
Confidence 34566778999999999999999999999999999899999999998888888888776655 7899999999875443
Q ss_pred --CCcccEEEecccccCcccHHHHHHHHHhcccCCCE
Q 025144 139 --DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR 173 (257)
Q Consensus 139 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~ 173 (257)
...+|.|++ .++.|-..+-.+.++||.+|.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred ccccccceEEE-----cCCChhhhhhhhHHHhhhcCc
Confidence 467888876 455667778888889998774
No 199
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.81 E-value=1.5e-08 Score=76.00 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=83.2
Q ss_pred HHHHHHHHhhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 55 RIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 55 ~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
+..++.+..++.. -++.++||+-||+|.++...+.+ + -.+|+.+|.++..+...+++++..+.. .++.++..|.
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-G-A~~v~fVE~~~~a~~~i~~N~~~l~~~--~~~~v~~~d~ 101 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-G-AKSVVFVEKNRKAIKIIKKNLEKLGLE--DKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHT-G--GGEEEEESSH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-C-CCeEEEEECCHHHHHHHHHHHHHhCCC--cceeeeccCH
Confidence 3445555555543 36889999999999999998887 2 348999999999999999999876644 4688999986
Q ss_pred CCC-C---CCCCcccEEEecccccCcccHHHHHHHHH--hcccCCCEEEEEe
Q 025144 133 LDL-P---FSDCFFDAITMGYGLRNVVDKRKALEESF--RVLKPGSRISVLD 178 (257)
Q Consensus 133 ~~~-~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~Lk~gG~l~~~~ 178 (257)
... . ....+||+|++......-.....++..+. .+|+++|.+++-.
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 542 1 13678999999776554322466777776 7899999886544
No 200
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.80 E-value=2.5e-07 Score=73.23 Aligned_cols=106 Identities=20% Similarity=0.255 Sum_probs=67.4
Q ss_pred CCeEEEecCCCC-hhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhh-hhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 70 GDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD-LVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 70 ~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
+.+|+=||||+= ..++.+++...++..++++|.+++..+.+++..+ ..+.+ .++.++.+|..+...+-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~--~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS--KRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc--CCeEEEecchhccccccccCCEEEE
Confidence 359999999974 4455566555567789999999999999998776 33333 6899999999876544467999998
Q ss_pred cccccCc-ccHHHHHHHHHhcccCCCEEEEE
Q 025144 148 GYGLRNV-VDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 148 ~~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
......- .+..+++.++.+.++||..+++-
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7655522 46789999999999999988765
No 201
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.78 E-value=1.3e-09 Score=80.52 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=72.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+.++||+|+|.|..+..++..+ .+|++.+.|..|..+.+++ +..++... +..-.+-+||+|.|.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----------~ynVl~~~--ew~~t~~k~dli~clN 177 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----------NYNVLTEI--EWLQTDVKLDLILCLN 177 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----------CCceeeeh--hhhhcCceeehHHHHH
Confidence 4699999999999999988664 5899999999998887764 23332211 1111235699999999
Q ss_pred cccCcccHHHHHHHHHhcccC-CCEEEEE
Q 025144 150 GLRNVVDKRKALEESFRVLKP-GSRISVL 177 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~-gG~l~~~ 177 (257)
.+....++-++|+.++.+|+| +|.+++.
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 999888999999999999999 8887654
No 202
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.77 E-value=1.2e-07 Score=73.46 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=59.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCe-eEEEccCCC-----CCCCCCc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALD-----LPFSDCF 141 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~-----~~~~~~~ 141 (257)
.++.+|||+|||||.++..+++. + ..+|+++|+++.|+....+.- +++ .+...|+.. ...+-..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~--------~~v~~~~~~ni~~~~~~~~~~d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD--------ERVKVLERTNIRYVTPADIFPDFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC--------CCeeEeecCCcccCCHhHcCCCcee
Confidence 46779999999999999999986 2 358999999998887622211 222 122233332 2112235
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+|+++++. ...+..+.+.|++ |.+++.
T Consensus 144 ~DvsfiS~--------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 144 FDVSFISL--------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred eeEEEeeh--------HhHHHHHHHHhCc-CeEEEE
Confidence 77766644 3357889999999 776543
No 203
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.2e-08 Score=69.87 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=70.7
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
+-..++.-.+.+++|+|||.|.++....-. ....+.|+|+++++++.+.++..+.. -++.+.++|+.++.+..+
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqcdildle~~~g 113 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQCDILDLELKGG 113 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhh----hhhheeeeeccchhccCC
Confidence 334445556889999999999999544322 34589999999999999999987765 477999999999887789
Q ss_pred cccEEEecccccCc
Q 025144 141 FFDAITMGYGLRNV 154 (257)
Q Consensus 141 ~~D~v~~~~~l~~~ 154 (257)
.||.++.+..+..-
T Consensus 114 ~fDtaviNppFGTk 127 (185)
T KOG3420|consen 114 IFDTAVINPPFGTK 127 (185)
T ss_pred eEeeEEecCCCCcc
Confidence 99999998877644
No 204
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.76 E-value=6.9e-09 Score=81.21 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=95.1
Q ss_pred CCCCeEEEecCCCChhHH-HHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh-------------cc------------
Q 025144 68 KTGDNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-------------AC------------ 121 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-------------~~------------ 121 (257)
.++.++||||||+--.-. ...+. -.+++..|+++.-++..++-++..+. .+
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 346799999999854322 22222 24899999999888766654432110 00
Q ss_pred CCCe-eEEEccCCCCC-CCC-----CcccEEEecccccCc----ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHH
Q 025144 122 YKNI-EWVEGDALDLP-FSD-----CFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 190 (257)
Q Consensus 122 ~~~~-~~~~~d~~~~~-~~~-----~~~D~v~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 190 (257)
...+ .++..|+.+.+ +.+ .+||+|++.+++... ++..+.++++.++|||||.|+++.......-...
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG-- 209 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG-- 209 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET--
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC--
Confidence 0123 37788988754 222 359999999998866 3467789999999999999988765432211000
Q ss_pred HHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeec----CceeEEEeeeC
Q 025144 191 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS----GGLMGNLVATR 257 (257)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~----~g~~~~~~~~k 257 (257)
...+. .-..+.+.+++.|+++||++.+..... ...+-.++|||
T Consensus 210 ------------------~~~F~------~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 210 ------------------GHKFP------CLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ------------------TEEEE---------B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ------------------CEecc------cccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 00010 013588999999999999998877411 11244566665
No 205
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.75 E-value=9.8e-08 Score=79.78 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=78.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+.+|||++||+|..+..++... +..+|+++|+++.+++.++++++..+. .++.+.+.|+..+....+.||+|++..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 4689999999999999998774 235899999999999999998865442 456789999866321146799999854
Q ss_pred cccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
. ..+..++....+.+++||.+++.
T Consensus 134 -~---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 -F---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -C---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 2 33467777867778999999887
No 206
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.75 E-value=9.9e-07 Score=66.82 Aligned_cols=107 Identities=23% Similarity=0.197 Sum_probs=76.2
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCc
Q 025144 65 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCF 141 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 141 (257)
+.+.++.+||-+|+.+|....++++-.++...|+++|.|+......-...+.. +|+--+..|+.... ..-+.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhccccc
Confidence 56788999999999999999999999988889999999996654443332221 79999999998642 22357
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+|++.-. ..++..-++.++...||+||.++++-
T Consensus 144 VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999987432 23345667888889999999987763
No 207
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.75 E-value=6.1e-07 Score=68.37 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhhhC----CCC-CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeE
Q 025144 53 QHRIWKRMAVSWSG----AKT-GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 127 (257)
Q Consensus 53 ~~~~~~~~~~~~~~----~~~-~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~ 127 (257)
..+.|.+.++..+. ... +.+++|||+|.|..+..++=. .|..+++.+|...+-+...+...++.+. +|+++
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv~i 121 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL---ENVEI 121 (215)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC---CCeEE
Confidence 46677777766432 222 579999999999999998844 4777899999988888777777666554 68999
Q ss_pred EEccCCCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 128 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 128 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
+++.++++......||+|++..+ .+...+.+-+...+|+||.+++
T Consensus 122 ~~~RaE~~~~~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 122 VHGRAEEFGQEKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ehhhHhhcccccccCcEEEeehc----cchHHHHHHHHHhcccCCcchh
Confidence 99999987532112999998653 3466778888899999998753
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.74 E-value=2.1e-07 Score=76.30 Aligned_cols=150 Identities=22% Similarity=0.293 Sum_probs=92.3
Q ss_pred hhHHHHhhhhhhhhhhhhhhh--hhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHh------CCCceEEEE
Q 025144 29 SERQELFSRIAPVYDNLNDLL--SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV------GSQGKVIGL 100 (257)
Q Consensus 29 ~~~~~~y~~~a~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~~v~~~ 100 (257)
+.+.++|+..-..+....... .+--.....+.+..++...++.+|+|.+||+|.+...+.+.+ ....+++|+
T Consensus 4 d~~g~~yE~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ 83 (311)
T PF02384_consen 4 DILGDLYEYFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGI 83 (311)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEee
Confidence 345566666554442211110 111244556677777777888899999999999998887742 246799999
Q ss_pred eCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-C-CCcccEEEecccccCc--cc-------------------H
Q 025144 101 DFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-S-DCFFDAITMGYGLRNV--VD-------------------K 157 (257)
Q Consensus 101 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~D~v~~~~~l~~~--~~-------------------~ 157 (257)
|+++.++..++.++.-.+.. ..+..+...|....+. . ...||+|+++..+... .+ -
T Consensus 84 ei~~~~~~la~~nl~l~~~~-~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (311)
T PF02384_consen 84 EIDPEAVALAKLNLLLHGID-NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE 162 (311)
T ss_dssp ES-HHHHHHHHHHHHHTTHH-CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH
T ss_pred cCcHHHHHHHHhhhhhhccc-cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchh
Confidence 99999999888765332221 1235688888765432 2 4789999997665433 10 1
Q ss_pred HHHHHHHHhcccCCCEEEEEee
Q 025144 158 RKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 158 ~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..++.++.+.|++||.+.++.+
T Consensus 163 ~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 163 YAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhHHHHHhhcccccceeEEec
Confidence 2478899999999999876653
No 209
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=8.1e-07 Score=73.77 Aligned_cols=134 Identities=21% Similarity=0.300 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC-CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
++.-.......+...++.+|||++++.|.=+.++++...+ +..|+++|.++.-+...++++++.+. .++.+...|.
T Consensus 141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~ 217 (355)
T COG0144 141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDA 217 (355)
T ss_pred cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEeccc
Confidence 3444455556788899999999999999999999998754 34569999999999999999988765 4678888887
Q ss_pred CCCC---CCCCcccEEEeccc------ccCccc----------------HHHHHHHHHhcccCCCEEEEEeecCCCchhH
Q 025144 133 LDLP---FSDCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQPFT 187 (257)
Q Consensus 133 ~~~~---~~~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 187 (257)
...+ ...++||.|++... +..-++ ..++|....+.|||||.|+..+.+.......
T Consensus 218 ~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE 297 (355)
T COG0144 218 RRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE 297 (355)
T ss_pred ccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH
Confidence 6543 22235999996433 321122 3567999999999999999888776444433
Q ss_pred HHH
Q 025144 188 TAI 190 (257)
Q Consensus 188 ~~~ 190 (257)
...
T Consensus 298 ~vV 300 (355)
T COG0144 298 EVV 300 (355)
T ss_pred HHH
Confidence 333
No 210
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.3e-07 Score=73.88 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
....+.+.......++..|||||+|.|.++..|++. ...|+++|+++.+++..+++.... .+++++++|+..
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~~-----~n~~vi~~DaLk 87 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFAPY-----DNLTVINGDALK 87 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcccc-----cceEEEeCchhc
Confidence 334566677777788889999999999999999988 467999999999999999887522 699999999999
Q ss_pred CCCCCC-cccEEEecccc
Q 025144 135 LPFSDC-FFDAITMGYGL 151 (257)
Q Consensus 135 ~~~~~~-~~D~v~~~~~l 151 (257)
.+++.- .++.|+++-..
T Consensus 88 ~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 88 FDFPSLAQPYKVVANLPY 105 (259)
T ss_pred CcchhhcCCCEEEEcCCC
Confidence 876532 57888776543
No 211
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.71 E-value=1.5e-07 Score=72.78 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=70.2
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
..+..-..+.+...|||||.|||.++..+++. +.+|+++|.++.|+...+++....+.+ ...+++.+|+...+.|
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~--~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKS--GKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCcc--ceeeEEecccccCCCc
Confidence 33444456788899999999999999999987 679999999999999999998766543 6799999999887643
Q ss_pred CCcccEEEeccc
Q 025144 139 DCFFDAITMGYG 150 (257)
Q Consensus 139 ~~~~D~v~~~~~ 150 (257)
.||.++++..
T Consensus 123 --~fd~cVsNlP 132 (315)
T KOG0820|consen 123 --RFDGCVSNLP 132 (315)
T ss_pred --ccceeeccCC
Confidence 5899987544
No 212
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.71 E-value=9.3e-07 Score=67.02 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=90.6
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 135 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----- 135 (257)
+..++.....+++||||.=||..+..++..++.+.+|+++|+++...+.+.+..+..+.. ..++++++...+.
T Consensus 65 l~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~--~KI~~i~g~a~esLd~l~ 142 (237)
T KOG1663|consen 65 LQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD--HKITFIEGPALESLDELL 142 (237)
T ss_pred HHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc--ceeeeeecchhhhHHHHH
Confidence 333444456679999999999999999999988899999999999999998777655544 6799999988753
Q ss_pred -CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 136 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 136 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
..+.++||.++..+ +-.+....++++.+++|+||.|++-...+
T Consensus 143 ~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 143 ADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred hcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEecccc
Confidence 13468899998643 23345578899999999999998765333
No 213
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.70 E-value=1.4e-07 Score=71.53 Aligned_cols=100 Identities=25% Similarity=0.404 Sum_probs=71.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.+|+|+.||.|.++..+++. .....|+++|++|.+++.++++++..+.. .++..+++|..++.. .+.+|-|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~--~~i~~~~~D~~~~~~-~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVE--NRIEVINGDAREFLP-EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-T--TTEEEEES-GGG----TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCC--CeEEEEcCCHHHhcC-ccccCEEE
Confidence 567889999999999999999985 35678999999999999999988765544 578999999988754 68899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEE
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
+...-. ...+|..+.+.+++||.+
T Consensus 175 m~lp~~----~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 175 MNLPES----SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp E--TSS----GGGGHHHHHHHEEEEEEE
T ss_pred ECChHH----HHHHHHHHHHHhcCCcEE
Confidence 865422 235677788888988876
No 214
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.4e-08 Score=72.12 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=78.4
Q ss_pred CCCCCeEEEecCCCChh-HHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCccc
Q 025144 67 AKTGDNVLDVCCGSGDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFD 143 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 143 (257)
...+.+|||+|+|--.+ +..++.. .+..+|...|-+.+.++..++...........++.....+.... .....+||
T Consensus 27 ~~rg~~ilelgggft~laglmia~~-a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFD 105 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACK-APDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFD 105 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeee-cCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCccc
Confidence 33467999999995444 4444444 46789999999999999988876443222234454555544432 13456899
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
+|++...+..-+-...+.+.|+..|+|.|.-++..+.
T Consensus 106 iIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 106 IILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred EEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCc
Confidence 9999887765555678889999999999986665433
No 215
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.68 E-value=8.6e-07 Score=73.99 Aligned_cols=110 Identities=14% Similarity=0.184 Sum_probs=74.9
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...+...+... +.+|||++||+|.++..+++.. .+|+++|.++.+++.++++++..+. .++.++.+|+.+.-
T Consensus 195 l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~---~~v~~~~~d~~~~l 267 (362)
T PRK05031 195 MLEWALDATKGS-KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI---DNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEECCHHHHH
Confidence 334444444322 3579999999999999888763 4899999999999999998865442 48999999987631
Q ss_pred --CC--------------CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 --FS--------------DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 --~~--------------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.. ..+||+|++.-.=. .-...+++.+.+ +++.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~--G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA--GLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCCC--CCcHHHHHHHHc---cCCEEEEEe
Confidence 10 12589999866521 112445555544 666666543
No 216
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.67 E-value=6.8e-08 Score=79.62 Aligned_cols=111 Identities=27% Similarity=0.335 Sum_probs=93.6
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
...++..++|+|||.|.....+... ....++++|.++..+..+.......... ....++..|+...+++++.||.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~--~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLD--NKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhh--hhcceehhhhhcCCCCccccCcE
Confidence 4456678999999999999998876 4679999999998888877765544433 34455888999989999999999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.+..+.+|.++....+.+++++++|||.++..++.
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred EEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99999999999999999999999999999876544
No 217
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.67 E-value=8.3e-07 Score=67.69 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=85.8
Q ss_pred EEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEeccccc
Q 025144 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLR 152 (257)
Q Consensus 73 vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~ 152 (257)
|.||||..|.+...|++. +.-..++++|+++..++.|+++++..+.. .++.+..+|..+.-.+.+..|.|+...+=.
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~--~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLE--DRIEVRLGDGLEVLKPGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-T--TTEEEEE-SGGGG--GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCc--ccEEEEECCcccccCCCCCCCEEEEecCCH
Confidence 689999999999999998 44458999999999999999999876654 689999999876322223378988765422
Q ss_pred CcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHH
Q 025144 153 NVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLA 232 (257)
Q Consensus 153 ~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (257)
. -...+|.+....++....+++.- ......+++.|
T Consensus 78 ~--lI~~ILe~~~~~~~~~~~lILqP-------------------------------------------~~~~~~LR~~L 112 (205)
T PF04816_consen 78 E--LIIEILEAGPEKLSSAKRLILQP-------------------------------------------NTHAYELRRWL 112 (205)
T ss_dssp H--HHHHHHHHTGGGGTT--EEEEEE-------------------------------------------SS-HHHHHHHH
T ss_pred H--HHHHHHHhhHHHhccCCeEEEeC-------------------------------------------CCChHHHHHHH
Confidence 1 24556666666666655665532 12457889999
Q ss_pred HHcCceeeEEeee
Q 025144 233 LEIGFSRAKHYEL 245 (257)
Q Consensus 233 ~~~Gf~~~~~~~~ 245 (257)
.+.||.+++-.-.
T Consensus 113 ~~~gf~I~~E~lv 125 (205)
T PF04816_consen 113 YENGFEIIDEDLV 125 (205)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHCCCEEEEeEEE
Confidence 9999998875543
No 218
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.66 E-value=3.1e-07 Score=76.31 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=75.8
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+.+...+..++...+ .+|||++||+|.++..+++.. .+|+++|.++++++.++++.+..+. .++.++.+|+.+
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~---~~v~~~~~d~~~ 256 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI---DNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEEcCHHH
Confidence 334444444544333 479999999999999998773 4899999999999999998865442 479999999876
Q ss_pred CCCC----------C------CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 135 LPFS----------D------CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 135 ~~~~----------~------~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+... . ..||+|++.-. ...-...+++.+.+ |++.+++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYISC 311 (353)
T ss_pred HHHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEEc
Confidence 3210 1 13799988654 11112445555543 677776653
No 219
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.65 E-value=7.9e-07 Score=65.92 Aligned_cols=121 Identities=21% Similarity=0.244 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc
Q 025144 54 HRIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 131 (257)
Q Consensus 54 ~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 131 (257)
.+..++.+..++.. -.+.++||+-+|+|.++...+.+ + -..++.+|.+.......+++++..+.. .+..++..|
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-G-A~~~~~vE~~~~a~~~l~~N~~~l~~~--~~~~~~~~d 101 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-G-AARVVFVEKDRKAVKILKENLKALGLE--GEARVLRND 101 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-C-CceEEEEecCHHHHHHHHHHHHHhCCc--cceEEEeec
Confidence 44566777777754 57889999999999999999887 2 358999999999999999998776543 578888888
Q ss_pred CCCC--CCC-CCcccEEEeccccc-CcccHHHHHHH--HHhcccCCCEEEEEe
Q 025144 132 ALDL--PFS-DCFFDAITMGYGLR-NVVDKRKALEE--SFRVLKPGSRISVLD 178 (257)
Q Consensus 132 ~~~~--~~~-~~~~D~v~~~~~l~-~~~~~~~~l~~--~~~~Lk~gG~l~~~~ 178 (257)
.... ... .++||+|++...++ .+-+....+.. -..+|+|+|.+++-.
T Consensus 102 a~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 102 ALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred HHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 8743 111 23599999988777 12222333333 457899999997643
No 220
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.63 E-value=9.1e-07 Score=71.32 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=103.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhh--hhh--hhccCCCeeEEEccCCCCC-CCCCcc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ--DLV--SKACYKNIEWVEGDALDLP-FSDCFF 142 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~--~~~--~~~~~~~~~~~~~d~~~~~-~~~~~~ 142 (257)
+.-.+||-+|+|.|...+.+.+. +.-.+++.+|++|+|++.++++. ... +.-..++++++..|..++- -..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34569999999999999999887 22569999999999999998432 211 1112368999999998753 334689
Q ss_pred cEEEecccccCccc-----HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHH
Q 025144 143 DAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 217 (257)
Q Consensus 143 D~v~~~~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
|.|+....-..-+. -.++..-+.+.|+++|.+++..-..-..+ +
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp------------------------~------- 415 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP------------------------R------- 415 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC------------------------c-------
Confidence 99997543222221 15567788999999999987642221100 0
Q ss_pred HHhccCCHHHHHHHHHHcCceeeEEeee--cCceeEEEeeeC
Q 025144 218 SIREFLTGKDLEKLALEIGFSRAKHYEL--SGGLMGNLVATR 257 (257)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~--~~g~~~~~~~~k 257 (257)
.--.+.+-++++||...-.+.. .+|.|+..+|.+
T Consensus 416 ------vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 416 ------VFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred ------eeeeehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence 0113456788999987755543 577788877653
No 221
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.59 E-value=3.9e-08 Score=82.58 Aligned_cols=94 Identities=28% Similarity=0.344 Sum_probs=66.8
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEE-----eCChhHHHHHHhhhhhhhhccCCCeeEEEc--cCCCCCCCCCccc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGL-----DFSKNQLSMASSRQDLVSKACYKNIEWVEG--DALDLPFSDCFFD 143 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~-----D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~D 143 (257)
..+||+|||+|.++.++.++ .|+.+ |..+..++.|.++- +-...+ --..+|+++++||
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRG----------vpa~~~~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERG----------VPAMIGVLGSQRLPFPSNAFD 183 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcC----------cchhhhhhccccccCCccchh
Confidence 48899999999999999876 23333 33344555555441 212212 2345789999999
Q ss_pred EEEecccccCcc-cHHHHHHHHHhcccCCCEEEEEee
Q 025144 144 AITMGYGLRNVV-DKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 144 ~v~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+|.|..++..+. +-..+|-++.|+|+|||+++....
T Consensus 184 mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 184 MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 999988877663 335678899999999999987653
No 222
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=5.7e-07 Score=66.14 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=98.5
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH----HHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ----LSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
++.+.++.++.+|+|+=.|.|++++.+...+++...|+++-..+.. .+..+.+.... .....|.+.+..+...+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~-e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR-EPVYANVEVIGKPLVALG 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhh-hhhhhhhhhhCCcccccC
Confidence 3445578899999999999999999999998888888776653321 11111110000 001135555555555554
Q ss_pred CCCCcccEEEecccccCc-------ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCch
Q 025144 137 FSDCFFDAITMGYGLRNV-------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLA 209 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (257)
+.+..|++......|.+ .....+...+++.|||||.+++.++..........
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d-------------------- 177 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD-------------------- 177 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh--------------------
Confidence 34567777754433322 24678899999999999999999877544222111
Q ss_pred hhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEe
Q 025144 210 EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHY 243 (257)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 243 (257)
....++.+...+....+.+||+..-..
T Consensus 178 -------t~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 178 -------TITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred -------hhhhcccChHHHHHHHHhhcceeeeee
Confidence 111245678888899999999866433
No 223
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.55 E-value=6.7e-07 Score=71.47 Aligned_cols=120 Identities=21% Similarity=0.294 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
++..++++... ..+.+|||+-|=||.++...+.. .-.+|+.+|.|..+++.+++++...+.. ..++.+++.|+.
T Consensus 111 qR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~~Dvf 184 (286)
T PF10672_consen 111 QRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQGDVF 184 (286)
T ss_dssp GHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEES-HH
T ss_pred HHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHH
Confidence 44555555544 34789999999999999987654 2238999999999999999998755432 147899999987
Q ss_pred CCC---CCCCcccEEEecccccC------cccHHHHHHHHHhcccCCCEEEEEee
Q 025144 134 DLP---FSDCFFDAITMGYGLRN------VVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 134 ~~~---~~~~~~D~v~~~~~l~~------~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+.- -..++||+|++...-.. ..+...++..+.++|+|||.|++...
T Consensus 185 ~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 631 12468999998433111 12457789999999999999866543
No 224
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.54 E-value=8.2e-07 Score=67.71 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=68.4
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh------hccCCCeeEEEccCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS------KACYKNIEWVEGDALD 134 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~d~~~ 134 (257)
+++.+++.++...+|||||.|......+-.. +-....|||+.+...+.|+....... .....++.+.++|+.+
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 4455678889999999999999988777664 33459999999998887775433211 0112467888999876
Q ss_pred CCCC---CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 135 LPFS---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 135 ~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
.+.. -...|+|++++..- -++....|.++...||+|.+++.
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 4311 13479999988643 23556667778888998888754
No 225
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.50 E-value=1.6e-05 Score=64.51 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=66.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..++.++||+||++|.++..++++ +..|+++|..+ |-...... +++...+.|......+.+.+|+++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~~~L~~~---------~~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MAQSLMDT---------GQVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cCHhhhCC---------CCEEEEeccCcccCCCCCCCCEEE
Confidence 367889999999999999999987 56999999654 32222111 688888888877543367899999
Q ss_pred ecccccCcccHHHHHHHHHhcccCC
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPG 171 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~g 171 (257)
|..+ ..|.++.+-+.+.|..|
T Consensus 276 cDmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 276 CDMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred Eecc----cCHHHHHHHHHHHHhcC
Confidence 8664 34778888888888765
No 226
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.49 E-value=1e-05 Score=59.71 Aligned_cols=106 Identities=37% Similarity=0.624 Sum_probs=73.7
Q ss_pred EEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC--CCCCC-CcccEEEecc
Q 025144 73 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPFSD-CFFDAITMGY 149 (257)
Q Consensus 73 vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~~D~v~~~~ 149 (257)
++|+|||+|... .+.........++++|+++.++..+...... ... ..+.+...|... .++.. ..+|++ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL--GLVDFVVADALGGVLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC--CceEEEEeccccCCCCCCCCCceeEE-eee
Confidence 999999999976 3433321114789999999999985444322 110 116788888776 56655 489999 544
Q ss_pred cccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
...+..+....+..+.+.++|+|.+++.......
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4443333888999999999999999887765443
No 227
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=4.3e-06 Score=70.90 Aligned_cols=117 Identities=23% Similarity=0.346 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 53 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
..+.+...+..++...++.+++|+=||.|.++..+++. ..+|+|+|+++++++.|+++++..+. .|+.++.++.
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i---~N~~f~~~~a 350 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGI---DNVEFIAGDA 350 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEeCCH
Confidence 45566777778888888889999999999999999965 47999999999999999999877654 5799999999
Q ss_pred CCCCCC---CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 133 LDLPFS---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 133 ~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++.... ...+|.|+..-.=.-. ...+++.+. .++|..++++..
T Consensus 351 e~~~~~~~~~~~~d~VvvDPPR~G~--~~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 351 EEFTPAWWEGYKPDVVVVDPPRAGA--DREVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred HHHhhhccccCCCCEEEECCCCCCC--CHHHHHHHH-hcCCCcEEEEeC
Confidence 986422 2478999974321111 124454444 456777777654
No 228
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.46 E-value=8.3e-06 Score=73.91 Aligned_cols=123 Identities=19% Similarity=0.136 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhhCC-CCCCeEEEecCCCChhHHHHHHHh---C-------------------------------------
Q 025144 54 HRIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQV---G------------------------------------- 92 (257)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~---~------------------------------------- 92 (257)
.+.+...++...+. .++..++|..||+|.+.+..+... .
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34445555555555 567899999999999998776521 0
Q ss_pred -CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC--CCcccEEEecccccCc----ccHHHHHHHHH
Q 025144 93 -SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DCFFDAITMGYGLRNV----VDKRKALEESF 165 (257)
Q Consensus 93 -~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~----~~~~~~l~~~~ 165 (257)
...+++|+|+++.+++.|++++...+.. ..+.+.++|+.+++.+ .+++|+|+++.....- .+...+.+.+.
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~--~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVA--ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCC--cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 1136999999999999999999876543 4689999999887543 3579999998775432 23344544444
Q ss_pred hccc---CCCEEEEEe
Q 025144 166 RVLK---PGSRISVLD 178 (257)
Q Consensus 166 ~~Lk---~gG~l~~~~ 178 (257)
+.++ +|+.+++..
T Consensus 332 ~~lk~~~~g~~~~llt 347 (702)
T PRK11783 332 RRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHhCCCCeEEEEe
Confidence 4444 788876654
No 229
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.46 E-value=1.9e-06 Score=69.33 Aligned_cols=125 Identities=22% Similarity=0.368 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
++.-.......+...++.+|||++++.|.-+.++++.+++..++++.|+++.-+...+++++..+. .++.+...|..
T Consensus 70 Qd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~---~~v~~~~~D~~ 146 (283)
T PF01189_consen 70 QDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV---FNVIVINADAR 146 (283)
T ss_dssp HHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHH
T ss_pred cccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC---ceEEEEeeccc
Confidence 333334445556788899999999999999999999987678999999999999999998877664 57888877776
Q ss_pred CCC--CCCCcccEEEeccc------ccCccc----------------HHHHHHHHHhcc----cCCCEEEEEeecC
Q 025144 134 DLP--FSDCFFDAITMGYG------LRNVVD----------------KRKALEESFRVL----KPGSRISVLDFNK 181 (257)
Q Consensus 134 ~~~--~~~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~L----k~gG~l~~~~~~~ 181 (257)
... .....||.|++... +..-++ ..++|++..+.+ ||||.++..+.+.
T Consensus 147 ~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 147 KLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred cccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 641 22346999996332 222222 256799999999 9999998887553
No 230
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.45 E-value=9e-06 Score=66.33 Aligned_cols=107 Identities=25% Similarity=0.366 Sum_probs=85.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+|.+|+|+=||-|.+++.++.. + ..+|+++|++|.+++.++++++..+.. ..+..+++|.......-+.+|-|++
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~-g-~~~V~A~diNP~A~~~L~eNi~LN~v~--~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK-G-RPKVYAIDINPDAVEYLKENIRLNKVE--GRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc-C-CceEEEEecCHHHHHHHHHHHHhcCcc--ceeeEEeccHHHhhhccccCCEEEe
Confidence 44889999999999999999987 2 334999999999999999998765543 4589999999987654478999998
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
...- +...++....+.+++||.+...+....
T Consensus 263 ~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 263 GLPK----SAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred CCCC----cchhhHHHHHHHhhcCcEEEEEeccch
Confidence 7643 345677778888888999977765543
No 231
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.43 E-value=4.1e-06 Score=66.89 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.....+.+...+...++..|+|+|+|+|.++..|++. ..+++++|.++.+.+..++++... ++++++.+|+.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~---~~~v~~vE~d~~~~~~L~~~~~~~-----~~~~vi~~D~l 86 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR---GKRVIAVEIDPDLAKHLKERFASN-----PNVEVINGDFL 86 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH---SSEEEEEESSHHHHHHHHHHCTTC-----SSEEEEES-TT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc---cCcceeecCcHhHHHHHHHHhhhc-----ccceeeecchh
Confidence 4455666777777778899999999999999999988 379999999999999999877522 69999999999
Q ss_pred CCCCCC---CcccEEEecccccCcccHHHHHHHHHh
Q 025144 134 DLPFSD---CFFDAITMGYGLRNVVDKRKALEESFR 166 (257)
Q Consensus 134 ~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~ 166 (257)
++.... +....|+.+... ++. ..++.++..
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy-~is--~~il~~ll~ 119 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPY-NIS--SPILRKLLE 119 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETG-TGH--HHHHHHHHH
T ss_pred ccccHHhhcCCceEEEEEecc-cch--HHHHHHHhh
Confidence 876443 345566665443 332 345555554
No 232
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=8.3e-06 Score=61.45 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=76.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------CC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 138 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~ 138 (257)
+.++.+|+|+|+-+|.++..+++..+++..|+++|+.|-- ..+++.++++|+...+ +.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 4678899999999999999999998777779999986621 1267999999998753 33
Q ss_pred CCcccEEEecccc--------cCcc--c-HHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 139 DCFFDAITMGYGL--------RNVV--D-KRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 139 ~~~~D~v~~~~~l--------~~~~--~-~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
..++|+|++...- +|.- . ....+.-...+|+|||.+++-.+....
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 4557999974432 1111 0 244567777899999999887776544
No 233
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.38 E-value=3.6e-07 Score=68.87 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=62.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------C--C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------F--S 138 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~--~ 138 (257)
++.+|||+||++|.++..++++.++...|+++|+.+. ... +++..+++|+.+.. + .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~--------~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPL--------QNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS---------TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccc--------cceeeeecccchhhHHHhhhhhcccc
Confidence 4589999999999999999988445679999999775 000 34555555554321 1 1
Q ss_pred CCcccEEEecccccCcc----c-------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 139 DCFFDAITMGYGLRNVV----D-------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~----~-------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.+.+|+|++........ + ....+.-+.+.|+|||.+++-.+..
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 26899999877332221 1 2334555667799999988776654
No 234
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.37 E-value=3.1e-06 Score=62.51 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=85.1
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 137 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 137 (257)
.+.+...-..-.+++|||+|+|+|..++..++. .-.+|...|+.+..+...+-+.+..+ .++.+...|..-
T Consensus 68 AR~i~~~PetVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g--- 138 (218)
T COG3897 68 ARYIDDHPETVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG--- 138 (218)
T ss_pred HHHHhcCccccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---
Confidence 344444444456789999999999998887766 23589999999888887777766544 578888888765
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
.+..+|+++...++..-+.-.+++....+....|-.+++.++.++..
T Consensus 139 ~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 139 SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 35679999999998877766777774444445555676777665443
No 235
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=3e-05 Score=59.50 Aligned_cols=201 Identities=12% Similarity=0.117 Sum_probs=123.2
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC---CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS---QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 131 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 131 (257)
.+++....+...+..+.+.+|+|+|+..-++.|.+.+.+ ...++.+|+|...+....+.+....+. -.+.-+++|
T Consensus 64 aIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~--l~v~~l~~~ 141 (321)
T COG4301 64 AILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG--LEVNALCGD 141 (321)
T ss_pred HHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC--CeEeehhhh
Confidence 344444444555667889999999999999888887633 248999999999988766665443321 245556677
Q ss_pred CCCC-C-CCCCc-ccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEE-eecCCCchh----------HHHHHHHHH
Q 025144 132 ALDL-P-FSDCF-FDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVL-DFNKSTQPF----------TTAIQEWMI 195 (257)
Q Consensus 132 ~~~~-~-~~~~~-~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~-~~~~~~~~~----------~~~~~~~~~ 195 (257)
.+.. . .+..+ ==.++...++.++. +...+|.+++..++||-.+++. |+..+.... ...+...+.
T Consensus 142 ~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~gVTa~FnlNvL 221 (321)
T COG4301 142 YELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQGVTAEFNLNVL 221 (321)
T ss_pred HHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCccchHHHHHHHHH
Confidence 6641 1 22222 23344556677773 5677899999999999998774 333322211 111111111
Q ss_pred hhhhhhhhccCCc-----hhhh---------------------------------hhhHHHHhccCCHHHHHHHHHHcCc
Q 025144 196 DNVVVPVASGYGL-----AEEY---------------------------------QYLKSSIREFLTGKDLEKLALEIGF 237 (257)
Q Consensus 196 ~~~~~~~~~~~~~-----~~~~---------------------------------~~~~~~~~~~~~~~~~~~~l~~~Gf 237 (257)
.+....+.+.+-. ...| ..+...+.+-++.+.++..++.+||
T Consensus 222 a~lNr~f~~nFD~~dfeh~Avyne~~~~iem~L~a~~~qTVr~g~l~ltv~F~age~iLtE~S~Kfslq~irq~laa~gl 301 (321)
T COG4301 222 AHLNRVFGGNFDVDDFEHVAVYNEDEGRIEMYLRAKREQTVRLGALDLTVDFAAGETILTEISRKFSLQAIRQQLAAAGL 301 (321)
T ss_pred HHHHHHhccCCCcchhhhHhhhhhhHHHHHHHhhcCCceEEEecCccceeecCCCceeehhhhhhCCHHHHHHHHHhcCC
Confidence 1111111111110 0001 1111223456788999999999999
Q ss_pred eeeEEeeecCceeEEEeeeC
Q 025144 238 SRAKHYELSGGLMGNLVATR 257 (257)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~k 257 (257)
+.+.+|+...+.+++++++|
T Consensus 302 ~~v~~wtd~~qdf~~~l~~v 321 (321)
T COG4301 302 EPVQKWTDAIQDFGLSLAAV 321 (321)
T ss_pred eEeeehhhhhhhhhhheecC
Confidence 99999999888888877764
No 236
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.32 E-value=6.8e-06 Score=68.52 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=80.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEec
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~ 148 (257)
+.+|||+.||+|..++.++.+.+.-.+|+++|+++.+++.++++++..+. .++.+++.|...+- ...+.||+|.+.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~---~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV---ENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999988742235899999999999999999865432 36889999987642 123579999885
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
. + ..+..++..+.+.++++|.+.+..
T Consensus 122 P-f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 P-F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 4 3 345678889999999999998863
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.31 E-value=1.5e-05 Score=59.86 Aligned_cols=106 Identities=22% Similarity=0.197 Sum_probs=82.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v 145 (257)
.++.+||+||-|.|-....+.+. +| .+=.-++..++.++..+...-. ...++.+..+--++. .+++++||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCccee
Confidence 66789999999999988888776 34 4556789999999888876322 226788888777663 3678999999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+-.---.+.+|...+...+.++|||+|++-...-
T Consensus 174 ~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 174 YYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred EeechhhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 8755446667888889999999999999866543
No 238
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.29 E-value=1.1e-06 Score=64.06 Aligned_cols=74 Identities=26% Similarity=0.486 Sum_probs=53.9
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCc-ccEEEec
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCF-FDAITMG 148 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~D~v~~~ 148 (257)
.|+|+.||.|..++.+++.+ .+|+++|+++..++.++.+.+-.+.. .++.++++|..+.. ...+. +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~--~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA--DNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G--GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999873 68999999999999999998876643 68999999998753 22222 8999985
Q ss_pred cc
Q 025144 149 YG 150 (257)
Q Consensus 149 ~~ 150 (257)
..
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 43
No 239
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.29 E-value=1.1e-05 Score=58.05 Aligned_cols=97 Identities=22% Similarity=0.249 Sum_probs=67.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHh---CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
..+..+|+|+|||.|.++..++..+ .++.+|+++|.++..++.+.++.+........+..+...+..+... .+..+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 3667799999999999999999832 2577999999999999999988765542212456666666654322 45678
Q ss_pred EEEecccccCcccHHHHHHHHHh
Q 025144 144 AITMGYGLRNVVDKRKALEESFR 166 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~ 166 (257)
+++..+....+. ..+++...+
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~ 122 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR 122 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH
Confidence 888766655553 234444443
No 240
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=0.0001 Score=54.95 Aligned_cols=106 Identities=20% Similarity=0.152 Sum_probs=79.2
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCC
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDC 140 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 140 (257)
.+++.++.+||-+|+.+|....++++-.+ ...+++++.|+.+....-...+.. +|+.-+..|+.... +--+
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve 144 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVE 144 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhcc
Confidence 35678999999999999999999999874 678999999998876655544332 68888999988642 2235
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..|+|+..-. --....-+..+....||+||.++++
T Consensus 145 ~VDviy~DVA--Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 145 KVDVIYQDVA--QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cccEEEEecC--CchHHHHHHHHHHHhcccCCeEEEE
Confidence 6899986221 1123455688889999999977664
No 241
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.21 E-value=3.7e-05 Score=63.33 Aligned_cols=123 Identities=17% Similarity=0.130 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhC---C----------------------------Cc-------
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG---S----------------------------QG------- 95 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~----------------------------~~------- 95 (257)
.+.+...++.+.+-.++..++|.=||+|.+.+..+-... | .+
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 445556667777778888999999999999988776521 1 11
Q ss_pred eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc-c---cHH----HHHHHHHhc
Q 025144 96 KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV-V---DKR----KALEESFRV 167 (257)
Q Consensus 96 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-~---~~~----~~l~~~~~~ 167 (257)
.++|+|+++.+++.|+.+....+.. +.|.+.++|+..+..+.+.+|+|+++.....- . ... .+.+.+++.
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~--d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVG--DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCC--ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 2779999999999999999877655 67999999999886444789999998764422 1 122 233445555
Q ss_pred ccCCCEEEEEe
Q 025144 168 LKPGSRISVLD 178 (257)
Q Consensus 168 Lk~gG~l~~~~ 178 (257)
++..+..++..
T Consensus 334 ~~~ws~~v~tt 344 (381)
T COG0116 334 LAGWSRYVFTT 344 (381)
T ss_pred hcCCceEEEEc
Confidence 56566666553
No 242
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.21 E-value=0.00064 Score=52.53 Aligned_cols=106 Identities=19% Similarity=0.129 Sum_probs=61.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-CCCCcccE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-FSDCFFDA 144 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~ 144 (257)
.-.+++||-+|= ..++...+...++..+|+++|+++.+++..++..++.+ -+++.+..|+.+. | .-.++||+
T Consensus 42 dL~gk~il~lGD--DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g----l~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 42 DLEGKRILFLGD--DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG----LPIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp -STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSE
T ss_pred cccCCEEEEEcC--CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC----CceEEEEecccccCCHHHhcCCCE
Confidence 346789999983 33333222233456799999999999999998887665 3599999999873 2 11388999
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
++.... ...+....++.+....||..|...+..+
T Consensus 116 f~TDPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 116 FFTDPP-YTPEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp EEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred EEeCCC-CCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 987543 3345567789999999987664333333
No 243
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.20 E-value=0.00011 Score=55.61 Aligned_cols=129 Identities=16% Similarity=0.117 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
.+.++.||||..|.+..+|.+. ++-..+++.|+++..++.|.++++..+.. +++.+..+|....--++..+|+|+..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~--~~i~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS--ERIDVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc--ceEEEeccCCccccCccCCcCEEEEe
Confidence 3456999999999999999998 56678999999999999999998876654 68999999996533344579999876
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHH
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 228 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (257)
.+=... ....|++-.+.|+.=-.+++. + .-...++
T Consensus 93 GMGG~l--I~~ILee~~~~l~~~~rlILQ-P------------------------------------------n~~~~~L 127 (226)
T COG2384 93 GMGGTL--IREILEEGKEKLKGVERLILQ-P------------------------------------------NIHTYEL 127 (226)
T ss_pred CCcHHH--HHHHHHHhhhhhcCcceEEEC-C------------------------------------------CCCHHHH
Confidence 642211 234444444444432234321 1 1245688
Q ss_pred HHHHHHcCceeeEEeee
Q 025144 229 EKLALEIGFSRAKHYEL 245 (257)
Q Consensus 229 ~~~l~~~Gf~~~~~~~~ 245 (257)
++.|...+|++..-.-+
T Consensus 128 R~~L~~~~~~I~~E~il 144 (226)
T COG2384 128 REWLSANSYEIKAETIL 144 (226)
T ss_pred HHHHHhCCceeeeeeee
Confidence 88999999988765444
No 244
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.18 E-value=1e-05 Score=65.23 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..+...++..+...++..++|.-+|.|..+..+++.++ ..+++|+|.++.+++.++++++... .++.++++++.+
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i~~nF~~ 80 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFE----GRVVLIHDNFAN 80 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcC----CcEEEEeCCHHH
Confidence 34455566677778888999999999999999999874 4899999999999999999886542 589999999987
Q ss_pred CC-----CCCCcccEEEecccccCc--ccHHHHH
Q 025144 135 LP-----FSDCFFDAITMGYGLRNV--VDKRKAL 161 (257)
Q Consensus 135 ~~-----~~~~~~D~v~~~~~l~~~--~~~~~~l 161 (257)
+. ...+++|.|++...+... +++++-+
T Consensus 81 l~~~l~~~~~~~vDgIl~DLGvSS~Qld~~~RGF 114 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLGVSSPQLDDPERGF 114 (305)
T ss_pred HHHHHHhcCCCcccEEEEeccCCHhhcCCCCCCC
Confidence 53 233579999986665433 3444433
No 245
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.17 E-value=1.1e-05 Score=59.19 Aligned_cols=98 Identities=21% Similarity=0.206 Sum_probs=76.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEeccc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 150 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 150 (257)
..+.|+|+|+|-++...+.. -.+|++++.+|.....|.++++-.+ ..++.++.+|+.+..+ +..|+|+|-..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicEml 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICEML 105 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHHHh
Confidence 58999999999988777655 3589999999999999999974433 3689999999999887 45899997432
Q ss_pred cc--CcccHHHHHHHHHhcccCCCEEEE
Q 025144 151 LR--NVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 151 l~--~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
-. -.+.....++.+.+.||-++.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 21 123456678888888999888853
No 246
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=2.6e-05 Score=61.85 Aligned_cols=189 Identities=16% Similarity=0.159 Sum_probs=108.9
Q ss_pred chhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCC-------CCCCeEEEecCCCChhHHHHHHHhCCCceEEEE
Q 025144 28 SSERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGA-------KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGL 100 (257)
Q Consensus 28 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~ 100 (257)
...+.+....+...+..+...-.......+...+..+-.. ....+||--|||.|+++..|+.. +..+-|-
T Consensus 102 ~~~m~kv~s~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~---G~~~qGN 178 (369)
T KOG2798|consen 102 PDFMSKVSSTLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL---GFKCQGN 178 (369)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh---ccccccc
Confidence 4455566666665555554433333333444433333222 22458999999999999999877 4567777
Q ss_pred eCChhHHHHHHhhh---hhhh----------------------------------hccCCCeeEEEccCCCCC---CCCC
Q 025144 101 DFSKNQLSMASSRQ---DLVS----------------------------------KACYKNIEWVEGDALDLP---FSDC 140 (257)
Q Consensus 101 D~s~~~~~~a~~~~---~~~~----------------------------------~~~~~~~~~~~~d~~~~~---~~~~ 140 (257)
+.|--|+--..=.+ +..+ .....+..+..+|+.+.- -..+
T Consensus 179 EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~ 258 (369)
T KOG2798|consen 179 EFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAG 258 (369)
T ss_pred HHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCC
Confidence 88777764332211 0000 000011222334444321 1124
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHh
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 220 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
.||+|+..+.+....+....+..|.++|||||+.+-..+-. .++....+... ...
T Consensus 259 ~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLl------------------YHF~d~~g~~~-------~~s 313 (369)
T KOG2798|consen 259 SYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLL------------------YHFEDTHGVEN-------EMS 313 (369)
T ss_pred ccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEecccee------------------eeccCCCCCcc-------ccc
Confidence 79999988888877888999999999999999986432110 00000000000 000
Q ss_pred ccCCHHHHHHHHHHcCceeeEEee
Q 025144 221 EFLTGKDLEKLALEIGFSRAKHYE 244 (257)
Q Consensus 221 ~~~~~~~~~~~l~~~Gf~~~~~~~ 244 (257)
--++.+++..+.+..||++++...
T Consensus 314 iEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 314 IELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred ccccHHHHHHHHHhcCcEEEEeee
Confidence 134789999999999999887653
No 247
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.17 E-value=8.5e-06 Score=67.77 Aligned_cols=75 Identities=31% Similarity=0.576 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+...+..++...++ +|||+-||.|.++..+++. ..+|+|+|.++.+++.|+++++..+. .|++++.++.+
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i---~n~~f~~~~~~ 254 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGI---DNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SH
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCC---CcceEEEeecc
Confidence 45556666777776666 8999999999999999966 46999999999999999999876553 58999988765
Q ss_pred CC
Q 025144 134 DL 135 (257)
Q Consensus 134 ~~ 135 (257)
++
T Consensus 255 ~~ 256 (352)
T PF05958_consen 255 DF 256 (352)
T ss_dssp HC
T ss_pred ch
Confidence 43
No 248
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.16 E-value=3.4e-05 Score=67.88 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCC-------CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGS-------QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~-------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
...+|||.|||+|.+...+++.+.. ...++++|+++..+..++.++...+. ..+.+...|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~---~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL---LEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC---CCceeeecccccccccccc
Confidence 3459999999999999998877521 24789999999999999988754431 23455555543211
Q ss_pred CCCCcccEEEeccccc
Q 025144 137 FSDCFFDAITMGYGLR 152 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~ 152 (257)
-..+.||+|+.+-...
T Consensus 108 ~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 108 SYLDLFDIVITNPPYG 123 (524)
T ss_pred cccCcccEEEeCCCcc
Confidence 1125799999976655
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.15 E-value=7.4e-07 Score=60.89 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=44.1
Q ss_pred EEecCCCChhHHHHHHHhCCCc--eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCCcccEEEecc
Q 025144 74 LDVCCGSGDLSFLLSEQVGSQG--KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITMGY 149 (257)
Q Consensus 74 LdiG~G~G~~~~~l~~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~ 149 (257)
||+|+..|..+..+++.+.+.. +++++|..+. .+..++.++..+.. .++++++++..+. .++.+++|+++...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~--~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS--DRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC--CeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 6899999999988887654443 7999999885 22333333322222 5799999998753 13347899999755
Q ss_pred cccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
-|..+.....++.+.+.|+|||.+++-+
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3444566778999999999999987754
No 250
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.13 E-value=4.6e-05 Score=64.23 Aligned_cols=102 Identities=25% Similarity=0.339 Sum_probs=84.5
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 151 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l 151 (257)
++|-+|||.-.+...+-+. ....++-+|+|+..++....+.... .+-.++...|...+.+++++||+|+....+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred eeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCcc
Confidence 8999999999888887765 3568999999999988887775422 157899999999999999999999999988
Q ss_pred cCcc-c---------HHHHHHHHHhcccCCCEEEEEee
Q 025144 152 RNVV-D---------KRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 152 ~~~~-~---------~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++. + ....+.++++++++||+.+.+..
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 8773 1 24558899999999999877765
No 251
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.12 E-value=1.6e-05 Score=61.50 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=60.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+..+|+|||||.-=++..+... .++..|+++|++..+++.....+...+ .+..+...|...-+ +....|+.++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~-~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP-PKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH-TTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC-CCCCcchhhH
Confidence 44779999999999888887765 467899999999999999998877665 56777778887743 4578999998
Q ss_pred cccccCcc
Q 025144 148 GYGLRNVV 155 (257)
Q Consensus 148 ~~~l~~~~ 155 (257)
.=+++-++
T Consensus 178 lK~lp~le 185 (251)
T PF07091_consen 178 LKTLPCLE 185 (251)
T ss_dssp ET-HHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 252
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=8.4e-05 Score=54.65 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=71.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCC--------CC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDL--------PF 137 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~--------~~ 137 (257)
+.|+.+|||+||.+|.++....++.+|...|.|+|+-.- . ++ ....++++ |+.+. ..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~--p~---~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E--PP---EGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c--CC---CCcccccccccCCHHHHHHHHHhC
Confidence 467899999999999999999999889999999997321 1 10 34556665 66663 14
Q ss_pred CCCcccEEEecccccCc----ccH-------HHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 138 SDCFFDAITMGYGLRNV----VDK-------RKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
++-..|+|++...-... .|- ..++.-....++|+|.+++-.+......
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~ 191 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEA 191 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchH
Confidence 66789999975432211 121 2234444566789999998877765544
No 253
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.99 E-value=0.00041 Score=57.84 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=89.2
Q ss_pred CCeEEEecCCCChhHHHHHHHh--------------CCCceEEEEeCChhHHHHHHhhhhhhhh-----c-----cCCC-
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV--------------GSQGKVIGLDFSKNQLSMASSRQDLVSK-----A-----CYKN- 124 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~-----~~~~- 124 (257)
..+|+|+|||+|..+..+.... .|..++...|+-..=-...=+.+..... . ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 4589999999998775543321 1345777777532111111111110000 0 0011
Q ss_pred --eeEEEccCCCCCCCCCcccEEEecccccCccc--------------------------------------HHHHHHHH
Q 025144 125 --IEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--------------------------------------KRKALEES 164 (257)
Q Consensus 125 --~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~ 164 (257)
+..+.+.+-.--+|.++.+++++..++||+.. ...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233444443478999999999999999853 12234444
Q ss_pred HhcccCCCEEEEEeecCCCchhH-----HHHHHH-HHhhhhhhhhccCCchhhhhhhHHHHh--ccCCHHHHHHHHHHcC
Q 025144 165 FRVLKPGSRISVLDFNKSTQPFT-----TAIQEW-MIDNVVVPVASGYGLAEEYQYLKSSIR--EFLTGKDLEKLALEIG 236 (257)
Q Consensus 165 ~~~Lk~gG~l~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~G 236 (257)
.+-|.|||.+++....++..... ...... ....+........-..+.+ ..... ...+.+|+++.+++.|
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~---dsFniP~Y~ps~eEv~~~Ie~~g 300 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKR---DSFNIPVYAPSLQDFKEVVEANG 300 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHH---hcccCcccCCCHHHHHHHHhhcC
Confidence 56788999999887766432111 011111 1111111111111111111 11111 2459999999999999
Q ss_pred -ceeeEEeeec
Q 025144 237 -FSRAKHYELS 246 (257)
Q Consensus 237 -f~~~~~~~~~ 246 (257)
|++.+...+.
T Consensus 301 sF~I~~le~~~ 311 (386)
T PLN02668 301 SFAIDKLEVFK 311 (386)
T ss_pred CEEeeeeEEee
Confidence 6666555443
No 254
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.97 E-value=0.00015 Score=59.95 Aligned_cols=114 Identities=18% Similarity=0.286 Sum_probs=89.7
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCC
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDC 140 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 140 (257)
.+...++.||||+++-+|.-+.+++..+.....|++.|.+..-+.....++...+. .+..+...|...++ ++.
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---~ntiv~n~D~~ef~~~~~~~- 311 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---TNTIVSNYDGREFPEKEFPG- 311 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---CceEEEccCcccccccccCc-
Confidence 35667889999999999999999999887778999999999999999988877763 57888888887654 443
Q ss_pred cccEEEecccccC------------cc---c-------HHHHHHHHHhcccCCCEEEEEeecC
Q 025144 141 FFDAITMGYGLRN------------VV---D-------KRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 141 ~~D~v~~~~~l~~------------~~---~-------~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+||-|+......- .. + ..++|......+++||+|+..+.+-
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 8999996443332 11 1 2556788889999999998877654
No 255
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.95 E-value=2.7e-05 Score=58.71 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCCCcccE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFDA 144 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~ 144 (257)
....|+|.-||.|..++..+.+ ...|+++|++|.-+..|+.+++-.+.. .++.++++|+.++ .+....+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~--~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVP--DRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCC--ceeEEEechHHHHHHHHhhhhheeee
Confidence 3458999999999999888877 468999999999999999998877665 6999999999874 344555778
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCC
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGS 172 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG 172 (257)
|+.+.....-.-...-+-.+...++|.|
T Consensus 169 vf~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 169 VFLSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred eecCCCCCCcchhhhhhhhhhhhcchhH
Confidence 8776554433223333444445555543
No 256
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=7.2e-06 Score=58.18 Aligned_cols=47 Identities=28% Similarity=0.369 Sum_probs=40.7
Q ss_pred CCCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 135 LPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
..|.+++.|+|++.+++.|+. +...+++.+++.|||||.|-+..+..
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 467889999999999999984 67788999999999999998876543
No 257
>PRK10742 putative methyltransferase; Provisional
Probab=97.91 E-value=8.9e-05 Score=57.68 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=68.9
Q ss_pred HHHhhhCCCCCC--eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh----cc--CCCeeEEEcc
Q 025144 60 MAVSWSGAKTGD--NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----AC--YKNIEWVEGD 131 (257)
Q Consensus 60 ~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~--~~~~~~~~~d 131 (257)
.+.+..++.++. +|||+-+|+|..+..++.. +++|+++|-++.+....+..++.... .. ..+++++++|
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 344556666766 9999999999999999976 67899999999998888887765310 11 1468899999
Q ss_pred CCCCC-CCCCcccEEEecccccCc
Q 025144 132 ALDLP-FSDCFFDAITMGYGLRNV 154 (257)
Q Consensus 132 ~~~~~-~~~~~~D~v~~~~~l~~~ 154 (257)
..++- ...++||+|++.-++.+-
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCCC
Confidence 87642 123479999998877664
No 258
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.90 E-value=4.7e-05 Score=56.66 Aligned_cols=109 Identities=17% Similarity=0.281 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh----hccCCCeeEEEccCCCCC---CCCCc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KACYKNIEWVEGDALDLP---FSDCF 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~d~~~~~---~~~~~ 141 (257)
..-.+.|||||-|.++..|+..+ |..-+.|+++--..-+..++++.... .+.+.|+.+...+....- +..+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 34579999999999999999996 88899999999888888888875543 122467777777766532 22222
Q ss_pred ccEEEecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
-+-.+..+.--|+.. -..++.+..-+|++||.++.++
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 222222222112210 2456778888999999987654
No 259
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.89 E-value=0.00022 Score=50.55 Aligned_cols=84 Identities=20% Similarity=0.329 Sum_probs=58.4
Q ss_pred eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEEEecccccCcc-----------cHHHHHH
Q 025144 96 KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITMGYGLRNVV-----------DKRKALE 162 (257)
Q Consensus 96 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~-----------~~~~~l~ 162 (257)
+|+++|+-+++++..+++++..+.. .++.++..+-+.+. .+.+++|+++.+.. ++| .-...++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~--~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE--DRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G--SGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC--CcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHH
Confidence 5899999999999999999876544 57999998887764 23358999987644 332 1356688
Q ss_pred HHHhcccCCCEEEEEeecCCC
Q 025144 163 ESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 163 ~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
.+.+.|+|||.+.++......
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STC
T ss_pred HHHHhhccCCEEEEEEeCCCC
Confidence 899999999999888765433
No 260
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.88 E-value=5.6e-05 Score=54.49 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=48.1
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
+++|+|||.|..+..+++. .+..+++++|+++.+.+.++++++..+. .++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 4899999999999999887 4666999999999999999998764332 357777777665
No 261
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=2.4e-05 Score=66.14 Aligned_cols=75 Identities=25% Similarity=0.541 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
.+.+...+..+...+.+..++|+.||||.++..+++. -..|+|+++++..++.|+.+....+. .|.+|+++-.+
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngi---sNa~Fi~gqaE 441 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGI---SNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCc---cceeeeecchh
Confidence 5667778888889999999999999999999999876 36899999999999999999876554 69999999665
Q ss_pred C
Q 025144 134 D 134 (257)
Q Consensus 134 ~ 134 (257)
+
T Consensus 442 ~ 442 (534)
T KOG2187|consen 442 D 442 (534)
T ss_pred h
Confidence 5
No 262
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.71 E-value=0.00049 Score=58.47 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=85.5
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChh----HHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN----QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~----~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
-..|+|..+|.|.++..|.+. .|.++...+. .+...-.+ .-+-+.+.=.+.++.=+.+||+|
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydR---------GLIG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDR---------GLIGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred eeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhc---------ccchhccchhhccCCCCcchhhe
Confidence 358999999999999999754 2444444332 22222222 12333332233344335899999
Q ss_pred EecccccCcc---cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhcc
Q 025144 146 TMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREF 222 (257)
Q Consensus 146 ~~~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (257)
.+.+++.... +...++-++-|+|+|+|.+++-|...
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~----------------------------------------- 470 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD----------------------------------------- 470 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------------------------------
Confidence 9999888775 47788999999999999998865211
Q ss_pred CCHHHHHHHHHHcCceeeEEeeec--CceeEEEeeeC
Q 025144 223 LTGKDLEKLALEIGFSRAKHYELS--GGLMGNLVATR 257 (257)
Q Consensus 223 ~~~~~~~~~l~~~Gf~~~~~~~~~--~g~~~~~~~~k 257 (257)
-..++++++..-.++......-. .+--++++++|
T Consensus 471 -vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 471 -VLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred -HHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 23567778877777644433322 23467888876
No 263
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00084 Score=51.63 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=68.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCe-eEEEccCCCCC---CCCCcc
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALDLP---FSDCFF 142 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~~~---~~~~~~ 142 (257)
..++..+||+|+.||.++..++++ + -.+|+++|.....+..--+.- +++ .+...++..+. +. +..
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~-g-Ak~VyavDVG~~Ql~~kLR~d--------~rV~~~E~tN~r~l~~~~~~-~~~ 145 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR-G-AKHVYAVDVGYGQLHWKLRND--------PRVIVLERTNVRYLTPEDFT-EKP 145 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc-C-CcEEEEEEccCCccCHhHhcC--------CcEEEEecCChhhCCHHHcc-cCC
Confidence 356789999999999999999987 2 358999999776554332221 343 34445555442 22 367
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|++++.-++- ....+|..+..++++++.++..
T Consensus 146 d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 146 DLIVIDVSFI---SLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred CeEEEEeehh---hHHHHHHHHHHhcCCCceEEEE
Confidence 8999876654 4578899999999999987654
No 264
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.67 E-value=0.00029 Score=54.51 Aligned_cols=90 Identities=26% Similarity=0.341 Sum_probs=52.4
Q ss_pred HHhhhCCCCC--CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc------cCCCeeEEEccC
Q 025144 61 AVSWSGAKTG--DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------CYKNIEWVEGDA 132 (257)
Q Consensus 61 ~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------~~~~~~~~~~d~ 132 (257)
+.+..++.++ .+|||.-+|-|..+..++.. +.+|+++|-||.+....+.-++..... ...+++++++|.
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 4444555554 49999999999999998854 579999999997766655443322111 114799999999
Q ss_pred CCC-CCCCCcccEEEecccccC
Q 025144 133 LDL-PFSDCFFDAITMGYGLRN 153 (257)
Q Consensus 133 ~~~-~~~~~~~D~v~~~~~l~~ 153 (257)
.++ ..++++||+|++..++.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 873 455789999999877665
No 265
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.66 E-value=0.0037 Score=51.71 Aligned_cols=177 Identities=17% Similarity=0.160 Sum_probs=82.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh---------------CCCceEEEEeCChhHHHHHHhhhhhhh--hccCCC--eeEE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQV---------------GSQGKVIGLDFSKNQLSMASSRQDLVS--KACYKN--IEWV 128 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~---------------~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~--~~~~ 128 (257)
+..-+|+|+||.+|..+..+.... .|..+|...|+-..=-...=+.+.... ....++ +..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 344599999999999887665532 122478888853311111111111100 000123 3345
Q ss_pred EccCCCCCCCCCcccEEEecccccCccc---------------------------------------HHHHHHHHHhccc
Q 025144 129 EGDALDLPFSDCFFDAITMGYGLRNVVD---------------------------------------KRKALEESFRVLK 169 (257)
Q Consensus 129 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~---------------------------------------~~~~l~~~~~~Lk 169 (257)
.+.+-.--+|+++.|++++..++||+.. ...+|+.=.+-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 6666665588999999999999998832 1223444456788
Q ss_pred CCCEEEEEeecCCCchhH----HHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcC-ceeeEEee
Q 025144 170 PGSRISVLDFNKSTQPFT----TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIG-FSRAKHYE 244 (257)
Q Consensus 170 ~gG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~ 244 (257)
|||.+++.....++.... ......+...+......+.-..+...... -.....+.+|+++.+++.| |++.+...
T Consensus 175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfn-iP~Y~ps~eEv~~~I~~~gsF~I~~le~ 253 (334)
T PF03492_consen 175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFN-IPIYFPSPEEVRAIIEEEGSFEIEKLEL 253 (334)
T ss_dssp EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG---SBB---HHHHHHHHHHHTSEEEEEEEE
T ss_pred cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhcee-CCccCCCHHHHHHHHhcCCCEEEEEEEE
Confidence 999999887776552110 11111211111111111111111110000 0012459999999999988 66654443
Q ss_pred e
Q 025144 245 L 245 (257)
Q Consensus 245 ~ 245 (257)
+
T Consensus 254 ~ 254 (334)
T PF03492_consen 254 F 254 (334)
T ss_dssp E
T ss_pred E
Confidence 3
No 266
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.00057 Score=54.40 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC
Q 025144 54 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 133 (257)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 133 (257)
...+.......+.+.++...+|.--|.|..+..+++.+++...++++|-++.+++.|++++...+ +++.+++.++.
T Consensus 8 ipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~ 83 (314)
T COG0275 8 IPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFA 83 (314)
T ss_pred cchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHH
Confidence 34455667777888888999999999999999999998667789999999999999999987654 68999999988
Q ss_pred CCC-----CCCCcccEEEecccccC
Q 025144 134 DLP-----FSDCFFDAITMGYGLRN 153 (257)
Q Consensus 134 ~~~-----~~~~~~D~v~~~~~l~~ 153 (257)
++. ...+++|-|++......
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DLGVSS 108 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDLGVSS 108 (314)
T ss_pred HHHHHHHhcCCCceeEEEEeccCCc
Confidence 753 22457888887555443
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.56 E-value=0.00083 Score=50.91 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=56.8
Q ss_pred CCCeEEEecCCCChhHHHHHH---HhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-------C-
Q 025144 69 TGDNVLDVCCGSGDLSFLLSE---QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-------F- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~---~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-------~- 137 (257)
++..|+|+|.-.|..+..++. .+++..+|+++|++....... ..+..+.. ++++++++|..+.. .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~--~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMS--PRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcccc--CceEEEECCCCCHHHHHHHHHhh
Confidence 355999999999988776654 445678999999965433222 22222222 69999999998752 1
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
......+|+ ..+-|..+...+.|+....++++|+++++.|
T Consensus 108 ~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 108 SPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp ---SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 112233443 3444455677888999999999999998765
No 268
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.53 E-value=0.00049 Score=52.76 Aligned_cols=103 Identities=26% Similarity=0.261 Sum_probs=73.6
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhH----HHHHHhhhhhhhhccCCCeeEEEccCCCCC---
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ----LSMASSRQDLVSKACYKNIEWVEGDALDLP--- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--- 136 (257)
.+++.|+.+||-+|+++|....++.+.++|..-|+++|.|... +..|+++ .|+--+..|+.-..
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------tNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------TNIIPIIEDARHPAKYR 221 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---------CCceeeeccCCCchhee
Confidence 4578999999999999999999999999999999999998744 4444444 67777777776521
Q ss_pred CCCCcccEEEecccccCcccH-HHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDK-RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~-~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..-+-.|+|++.-. -+|. ..+.-+..-.||+||.+++.-
T Consensus 222 mlVgmVDvIFaDva---qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 222 MLVGMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eeeeeEEEEeccCC---CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 22245677765221 1222 233456777899999987754
No 269
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.53 E-value=0.00028 Score=56.95 Aligned_cols=91 Identities=21% Similarity=0.309 Sum_probs=64.2
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 136 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~ 136 (257)
+...++..+...++..++|.--|.|..+..+++.++ ...++++|.++.+++.+++++.... .++.+++.++.++.
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~~----~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKFD----DRFIFIHGNFSNLD 82 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCCC----TTEEEEES-GGGHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhcc----ceEEEEeccHHHHH
Confidence 445566677788888999999999999999999874 4899999999999999999886543 68999999988753
Q ss_pred -----C-CCCcccEEEeccccc
Q 025144 137 -----F-SDCFFDAITMGYGLR 152 (257)
Q Consensus 137 -----~-~~~~~D~v~~~~~l~ 152 (257)
. ..+++|.|++...+.
T Consensus 83 ~~l~~~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLGVS 104 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S--
T ss_pred HHHHHccCCCccCEEEEccccC
Confidence 2 345788888755443
No 270
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.48 E-value=0.0018 Score=52.11 Aligned_cols=83 Identities=16% Similarity=0.071 Sum_probs=48.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh-hhccCCCeeEEEccCCCC-----CCCCCccc
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDL-----PFSDCFFD 143 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~-----~~~~~~~D 143 (257)
.-++||||+|....-..|.... .+.+++|+|+++..++.|+++++.. ... .+|.++...-... ..+++.||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~--~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLE--SRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-T--TTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccc--cceEEEEcCCccccchhhhcccceee
Confidence 4589999999887655554443 3689999999999999999998765 333 6788876543321 12346899
Q ss_pred EEEecccccCcc
Q 025144 144 AITMGYGLRNVV 155 (257)
Q Consensus 144 ~v~~~~~l~~~~ 155 (257)
...|+..++.-.
T Consensus 180 ftmCNPPFy~s~ 191 (299)
T PF05971_consen 180 FTMCNPPFYSSQ 191 (299)
T ss_dssp EEEE-----SS-
T ss_pred EEecCCccccCh
Confidence 999999888664
No 271
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.48 E-value=0.0015 Score=51.01 Aligned_cols=108 Identities=16% Similarity=-0.008 Sum_probs=69.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccC---CCeeEEEccCCCC---CCCCCc-
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACY---KNIEWVEGDALDL---PFSDCF- 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~---~~~~~~~~d~~~~---~~~~~~- 141 (257)
...+|||+|+|+|..+...+.. .+.+|...|... .+...+.+......... .++.+...+-... .+....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~--~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL--LGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH--hcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 3557999999999887777765 367999999744 44433333221111000 1444444433332 121233
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+|+|++..++.....++.++.-++..|..+|.+++...
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99999999999888888888889999988886655543
No 272
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=0.00094 Score=50.88 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=68.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCC----C-c---eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGS----Q-G---KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 136 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~----~-~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----- 136 (257)
-.+++|+++..|.++..|.+++.. . . .++++|+.+ |. ..+.+.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-------------PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-------------PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-------------ccCceEEeecccCCHhHHHHH
Confidence 358999999999999999887622 1 1 388999743 21 1268889999998753
Q ss_pred ---CCCCcccEEEeccc-----ccCccc------HHHHHHHHHhcccCCCEEEEEe
Q 025144 137 ---FSDCFFDAITMGYG-----LRNVVD------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~-----l~~~~~------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|..++.|+|+|... +|.+++ +...|.-...+|||||.++.--
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 55678999999654 555543 2445666778999999996533
No 273
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.0011 Score=53.70 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=69.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc-CCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC-YKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
...+|||+|.|.|.-+..+-.-++....++.++.|+..-+............. ..+..-+..|-.+++. .+.|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhh
Confidence 34589999999998777666655333467778888866555544332111100 0011122222222222 345777766
Q ss_pred cccccCcc---cHHHHHHHHHhcccCCCEEEEEeecCCCch
Q 025144 148 GYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQP 185 (257)
Q Consensus 148 ~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 185 (257)
.+-|-+.. .+...++++..++.|||.|++++...+...
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 55444432 234479999999999999999998876654
No 274
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.33 E-value=0.0042 Score=50.91 Aligned_cols=98 Identities=21% Similarity=0.287 Sum_probs=70.3
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc-CCCCCCCCCcc
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-ALDLPFSDCFF 142 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~ 142 (257)
....|+.+|+=+|+| .|..+..+++.+ +++|+++|.|++-++.|++.- .-.++... ......-.+.+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lG---------Ad~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLG---------ADHVINSSDSDALEAVKEIA 230 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhC---------CcEEEEcCCchhhHHhHhhC
Confidence 567889999999987 467888888875 589999999999998888762 33344433 22221112349
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
|+|+..-. ...+....+.|+++|.++++-..
T Consensus 231 d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 99987543 45677788899999999887655
No 275
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0084 Score=49.21 Aligned_cols=117 Identities=26% Similarity=0.365 Sum_probs=79.8
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCC---ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----
Q 025144 64 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ---GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---- 136 (257)
.+.+.|+.+|||+++-+|.-+..+++..... ..+++-|.++.-+.......+.... +++.+...|....+
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~---~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS---PNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC---cceeeecccceecccccc
Confidence 4577899999999999999999999886432 2799999998777776666533321 35555555554433
Q ss_pred -----CCCCcccEEEeccc------ccCccc-----------------HHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 137 -----FSDCFFDAITMGYG------LRNVVD-----------------KRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 137 -----~~~~~~D~v~~~~~------l~~~~~-----------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
.....||-|++.-. +..-++ ...+|.+-.++||+||.++..+.+...
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 12346999986221 111111 245688999999999999988766544
No 276
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=97.14 E-value=0.003 Score=50.81 Aligned_cols=110 Identities=19% Similarity=0.159 Sum_probs=75.3
Q ss_pred CeEEEecCCCChhHHHHHHHh-------------------CCCceEEEEeCCh--hHHHHHHhhhhhh------------
Q 025144 71 DNVLDVCCGSGDLSFLLSEQV-------------------GSQGKVIGLDFSK--NQLSMASSRQDLV------------ 117 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~-------------------~~~~~v~~~D~s~--~~~~~a~~~~~~~------------ 117 (257)
.+||.||+|.|.-...++..+ .+...++.+|+.+ ..+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987666665554 0124899999865 3444444433222
Q ss_pred --hhccCCCeeEEEccCCCCCCC-------CCcccEEEecccccCc-----ccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 118 --SKACYKNIEWVEGDALDLPFS-------DCFFDAITMGYGLRNV-----VDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 118 --~~~~~~~~~~~~~d~~~~~~~-------~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.....-++.|.+.|+..+..+ ....|+|.+.+++..+ ..-.++|.++...++||..|+|+|..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 011123688999999876532 1357889888887654 34677899999999999999998744
No 277
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.11 E-value=0.061 Score=42.93 Aligned_cols=167 Identities=13% Similarity=0.032 Sum_probs=91.6
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-C--
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-- 135 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-- 135 (257)
+.+...+.. ....|+.+|||-=.-...+. . +++..++=+|. |++++.-++.+...+.....+..++..|+.+ +
T Consensus 72 ~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~-~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~ 147 (260)
T TIGR00027 72 DFLLAAVAA-GIRQVVILGAGLDTRAYRLP-W-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPA 147 (260)
T ss_pred HHHHHHHhc-CCcEEEEeCCccccHHHhcC-C-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHH
Confidence 334444433 23479999998744443332 1 12345555554 4556655555554322222578899999862 1
Q ss_pred -----CCCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCc
Q 025144 136 -----PFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 208 (257)
Q Consensus 136 -----~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (257)
.+..+.--++++-.++.+++ +...+++.+.+...||+.+++-....-.............. ...+.
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~----~~~~~--- 220 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYH----AARGV--- 220 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHH----hhhcc---
Confidence 12233455777888888886 46788999998888888886544333111110000111100 00000
Q ss_pred hhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEE
Q 025144 209 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKH 242 (257)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 242 (257)
.........+.+++.+.|.+.||+..+.
T Consensus 221 ------~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 221 ------DGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred ------cccccccCCChhhHHHHHHHCCCeeecC
Confidence 0011122457899999999999998765
No 278
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.0084 Score=42.58 Aligned_cols=114 Identities=12% Similarity=0.169 Sum_probs=75.5
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
++.++..++..+.+|+|+|.|+.....++. + -...+|+|+++-.+..++-+.-+.+- .++..|..-|+....+.+
T Consensus 64 VLSll~~n~~GklvDlGSGDGRiVlaaar~-g-~~~a~GvELNpwLVaysrl~a~R~g~--~k~trf~RkdlwK~dl~d- 138 (199)
T KOG4058|consen 64 VLSLLRGNPKGKLVDLGSGDGRIVLAAARC-G-LRPAVGVELNPWLVAYSRLHAWRAGC--AKSTRFRRKDLWKVDLRD- 138 (199)
T ss_pred HHHHccCCCCCcEEeccCCCceeehhhhhh-C-CCcCCceeccHHHHHHHHHHHHHHhc--ccchhhhhhhhhhccccc-
Confidence 345555677679999999999999888776 2 35789999999988887755433332 267889999988876543
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
|.-++.+.+-..++|++ .++..-+..+..++..-+..|.
T Consensus 139 -y~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 139 -YRNVVIFGAESVMPDLE---DKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred -cceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEecCCCc
Confidence 55555544433333333 3444456667777655554444
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.89 E-value=0.017 Score=50.33 Aligned_cols=101 Identities=20% Similarity=0.146 Sum_probs=68.1
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-----------
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----------- 134 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----------- 134 (257)
..++.+|+=+|+|. |..+...++.+ +++|+++|.+++-++.+++.- ..+...|..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslG----------A~~v~i~~~e~~~~~~gya~~ 229 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMG----------AEFLELDFEEEGGSGDGYAKV 229 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcC----------CeEEEeccccccccccchhhh
Confidence 45788999999996 77778888875 568999999999988887631 1111111100
Q ss_pred CC----------CCC--CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 135 LP----------FSD--CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 135 ~~----------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.. +.+ +.+|+|+........+.+..+.++..+.+||||.++....
T Consensus 230 ~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 230 MSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 011 3599999766544333344446999999999999877654
No 280
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.82 E-value=0.047 Score=47.75 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=91.5
Q ss_pred hhHHHHhhhhhhhhhhhhhhh--hhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCC---CceEEEEeCC
Q 025144 29 SERQELFSRIAPVYDNLNDLL--SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS---QGKVIGLDFS 103 (257)
Q Consensus 29 ~~~~~~y~~~a~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s 103 (257)
+...+.|+-....|....... .+--.....+.+...+.+.+..+|.|..||+|.+.....+.+.. ...++|.|.+
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 445555555444444432221 11123445566666666667779999999999988877776532 2569999999
Q ss_pred hhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-C----CCCcccEEEeccccc---Cc---------------------
Q 025144 104 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-F----SDCFFDAITMGYGLR---NV--------------------- 154 (257)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~----~~~~~D~v~~~~~l~---~~--------------------- 154 (257)
+.....++.+.--.+.. ..+....+|-..-+ . ..+.||.|+++..+. +.
T Consensus 224 ~~t~~l~~mN~~lhgi~--~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489)
T COG0286 224 DTTYRLAKMNLILHGIE--GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTK 301 (489)
T ss_pred HHHHHHHHHHHHHhCCC--ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCC
Confidence 99999998876433321 12344555444322 2 336799999866553 00
Q ss_pred ccH-HHHHHHHHhcccCCCEEEEEe
Q 025144 155 VDK-RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 155 ~~~-~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.. ..++.++...|+|||...++-
T Consensus 302 ~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 302 NSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred CchHHHHHHHHHHhcCCCceEEEEe
Confidence 011 567889999999988655443
No 281
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.74 E-value=0.0053 Score=51.55 Aligned_cols=105 Identities=21% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~ 147 (257)
.+.+|||.=+|+|.-++..+..++...+|+..|+|+++++..+++++..+... ..+.+.+.|+..+- ...+.||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-ERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-CCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-ceEEEehhhHHHHhhhccccCCEEEe
Confidence 34589999999998888777775445689999999999999999987655431 25788888887632 24578999964
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.-+-.+..+|....+.++.||.|.+..
T Consensus 128 ----DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 ----DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 234467889999999999999998764
No 282
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.02 Score=49.21 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCeEEEecCCCChhHHHHHH---HhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 70 GDNVLDVCCGSGDLSFLLSE---QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~---~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
...|+-+|+|-|-+.....+ ......+++++|-+|.++...+.+ +..... .+++++..|+..++.+.++.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~--~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWD--NRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhc--CeeEEEeccccccCCchhhccchH
Confidence 45789999999977654433 333456899999999888776653 222222 689999999999886558899998
Q ss_pred ecccccCccc---HHHHHHHHHhcccCCCEEE
Q 025144 147 MGYGLRNVVD---KRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 147 ~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~ 175 (257)
+ -.|..+.| -.+.|.-+-+.|||+|+.+
T Consensus 445 S-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 445 S-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred H-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 5 22333322 3678899999999998775
No 283
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0062 Score=48.41 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=80.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc-cCCCeeEEEccCCCC--CCCCCcc
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL--PFSDCFF 142 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~~~--~~~~~~~ 142 (257)
.....+++|-||.|.|...+..+++ ..-.++..+|++...++..++.+.....+ ..+++.+..+|...+ ....++|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 3445679999999999999988877 34558999999998888888776543211 125788888887654 2446889
Q ss_pred cEEEecccccCccc----HHHHHHHHHhcccCCCEEEEEe
Q 025144 143 DAITMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 143 D~v~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|+|+.-..=--.+. ....+..+.+.||+||+++...
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99986332111111 3556888999999999987754
No 284
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.71 E-value=0.059 Score=39.85 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=82.5
Q ss_pred ecCCCChhHHHHHHHhCCCceEEEEeCChh--HHHH---HHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEE
Q 025144 76 VCCGSGDLSFLLSEQVGSQGKVIGLDFSKN--QLSM---ASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 146 (257)
Q Consensus 76 iG~G~G~~~~~l~~~~~~~~~v~~~D~s~~--~~~~---a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~ 146 (257)
||=|.-.++..|++..+....+++.-++.. ..+. +.+++...... .-.-....|+.++. ...+.||.|+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~--g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL--GVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc--CCccccCCCCCcccccccccCCcCCEEE
Confidence 555666677888888654556766655443 2221 11233222111 22334566777654 2467899999
Q ss_pred ecccccCc--c----c-------HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhh
Q 025144 147 MGYGLRNV--V----D-------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 213 (257)
Q Consensus 147 ~~~~l~~~--~----~-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (257)
.++.-.-. . + +..++..+.++|+++|.+.+.-...+.
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------------------------------ 130 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------------------------------ 130 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------------------------------
Confidence 87764431 0 1 356789999999999999776543322
Q ss_pred hhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCcee
Q 025144 214 YLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 250 (257)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~ 250 (257)
++.-++.++.+++||...+...+....+
T Consensus 131 ---------y~~W~i~~lA~~~gl~l~~~~~F~~~~y 158 (166)
T PF10354_consen 131 ---------YDSWNIEELAAEAGLVLVRKVPFDPSDY 158 (166)
T ss_pred ---------CccccHHHHHHhcCCEEEEEecCCHHHC
Confidence 2334677888999999998887764443
No 285
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.55 E-value=0.024 Score=51.68 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=63.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh------CC-----CceEEEEeCCh---hHHHHHHhh-----------hhhhhh---
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQV------GS-----QGKVIGLDFSK---NQLSMASSR-----------QDLVSK--- 119 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~~D~s~---~~~~~a~~~-----------~~~~~~--- 119 (257)
.+.-+|+|+|-|+|.......+.. .+ ..+++.+|..| +-+..+... .+..+.
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 334699999999999776666544 12 34899999643 333332211 111000
Q ss_pred c--------cCCCeeEEEccCCCC-CCCCCcccEEEeccccc-Cccc--HHHHHHHHHhcccCCCEEE
Q 025144 120 A--------CYKNIEWVEGDALDL-PFSDCFFDAITMGYGLR-NVVD--KRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 120 ~--------~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~l~-~~~~--~~~~l~~~~~~Lk~gG~l~ 175 (257)
. ..-.+.+..+|+.+. +.....+|+++....-- .-++ -..+++.+.+.++|||.+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 0 001344666777642 21125699999753211 1122 2778999999999999986
No 286
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.51 E-value=0.023 Score=45.13 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=37.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCC-------CceEEEEeCChhHHHHHHhhhhh
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGS-------QGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~-------~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
..+|+|+|+|+|.++..+++.+.. ..+|+.+|.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999999987632 24899999999998888887754
No 287
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=96.42 E-value=0.034 Score=41.42 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=77.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh---CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-------CC
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-------FS 138 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~ 138 (257)
.+..|+|+|.-.|..+.+.+... +...+|.++|++-..+..+.... +++.+++++-.+.. ..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~--------p~i~f~egss~dpai~eqi~~~~ 140 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV--------PDILFIEGSSTDPAIAEQIRRLK 140 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC--------CCeEEEeCCCCCHHHHHHHHHHh
Confidence 45589999999888777776542 44479999999887765554433 79999999998853 22
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
++.--+.++..+-|+.+...+.|+-...+|..|-++++-+.+-..
T Consensus 141 ~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 141 NEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 333345556677777777788888889999999999887755433
No 288
>PHA01634 hypothetical protein
Probab=96.40 E-value=0.03 Score=38.76 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=38.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
.+.+|+|||++-|..+++++-+ + -..|+++++++...+..++.++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-G-AK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-G-ASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-C-ccEEEEeccCHHHHHHHHHHhhh
Confidence 4679999999999999998866 2 34899999999999999887643
No 289
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.34 E-value=0.0034 Score=49.66 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=63.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHh-h------hhhhhhccCCCeeEEEccCCCCCC-CC
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS-R------QDLVSKACYKNIEWVEGDALDLPF-SD 139 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~-~------~~~~~~~~~~~~~~~~~d~~~~~~-~~ 139 (257)
..+++|||+|||+|-..+..... ....+...|.+.+.++...- + ..........-..+.+.+..+..+ ..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred ecCceeEecCCcccccchhhhhh--ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhc
Confidence 35779999999999998888765 23689999998887732110 0 000000000111222221111111 12
Q ss_pred C--cccEEEecccccCcccHHHH-HHHHHhcccCCCEEEEE
Q 025144 140 C--FFDAITMGYGLRNVVDKRKA-LEESFRVLKPGSRISVL 177 (257)
Q Consensus 140 ~--~~D~v~~~~~l~~~~~~~~~-l~~~~~~Lk~gG~l~~~ 177 (257)
+ +||+|.++-++...+..... .......++++|.++++
T Consensus 193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 3 79999998888877766555 55666677888887654
No 290
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.26 E-value=0.029 Score=47.15 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=64.2
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-CCcccEEEecc
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMGY 149 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~ 149 (257)
..|||||+|||.++...++. + .-.+++++.=..|.+.|++.....+.+ ++|+++.---.++... ....|+++.-.
T Consensus 68 v~vLdigtGTGLLSmMAvra-g-aD~vtA~EvfkPM~d~arkI~~kng~S--dkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA-G-ADSVTACEVFKPMVDLARKIMHKNGMS--DKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred EEEEEccCCccHHHHHHHHh-c-CCeEEeehhhchHHHHHHHHHhcCCCc--cceeeeccccceeeecCcchhhhhhHhh
Confidence 37899999999999887776 3 447999999999999999988776665 6788877666554321 22366665433
Q ss_pred cccCc--ccHHHHHHHHHhccc
Q 025144 150 GLRNV--VDKRKALEESFRVLK 169 (257)
Q Consensus 150 ~l~~~--~~~~~~l~~~~~~Lk 169 (257)
....+ +.....+++.++.|-
T Consensus 144 fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhccccchhHHHHHHHhc
Confidence 22222 123445666666553
No 291
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.24 E-value=0.075 Score=45.07 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=69.4
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-C-----
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L----- 135 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~----- 135 (257)
.....++.+||.+|+|. |..+..+++.. +. +++++|.+++..+.+++.. ...++...-.+ .
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~ 247 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALR 247 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHH
Confidence 44567788999999988 88888998885 43 6999999999888887652 11222211110 0
Q ss_pred C-CCCCcccEEEeccc---------------ccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 P-FSDCFFDAITMGYG---------------LRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~-~~~~~~D~v~~~~~---------------l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
. .....+|+|+-.-. ++...+....+..+.+.++++|.++...
T Consensus 248 ~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 248 ELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred HHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 1 12336898875321 1122345667888999999999998764
No 292
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.13 E-value=0.078 Score=41.79 Aligned_cols=124 Identities=16% Similarity=0.124 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHH---hC-CCceEEEEeCCh--------------------------
Q 025144 55 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQ---VG-SQGKVIGLDFSK-------------------------- 104 (257)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~-~~~~v~~~D~s~-------------------------- 104 (257)
..+...+...+...-+..|+|+||=.|..+..+... ++ ++.++.++|.=+
T Consensus 60 ~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~ 139 (248)
T PF05711_consen 60 DNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLA 139 (248)
T ss_dssp HHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCT
T ss_pred HHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccc
Confidence 334444444443444558999999999776554432 22 345788888311
Q ss_pred hHHHHHHhhhhhhhhccCCCeeEEEccCCC-CC-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 105 NQLSMASSRQDLVSKACYKNIEWVEGDALD-LP-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
..++..+++++..+.. .+++.++.+.+.+ ++ .+.+. +.++..-....+.....|+.++..|.|||.+++-+++.
T Consensus 140 ~s~e~V~~n~~~~gl~-~~~v~~vkG~F~dTLp~~p~~~--IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 140 VSLEEVRENFARYGLL-DDNVRFVKGWFPDTLPDAPIER--IALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHHCCCCTTTS-STTEEEEES-HHHHCCC-TT----EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cCHHHHHHHHHHcCCC-cccEEEECCcchhhhccCCCcc--EEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 1344444555443321 1579999999865 22 22232 33333333344456788999999999999998877654
No 293
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.08 E-value=0.023 Score=38.14 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=26.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeC
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 102 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~ 102 (257)
.+....+|||||.|.+.-.|... +..-.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE---GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC---CCCcccccc
Confidence 45568999999999998888765 677889995
No 294
>PRK13699 putative methylase; Provisional
Probab=96.03 E-value=0.03 Score=43.72 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=34.6
Q ss_pred eEEEccCCCC--CCCCCcccEEEeccccc----C-----c--c---c-HHHHHHHHHhcccCCCEEEE
Q 025144 126 EWVEGDALDL--PFSDCFFDAITMGYGLR----N-----V--V---D-KRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 126 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~----~-----~--~---~-~~~~l~~~~~~Lk~gG~l~~ 176 (257)
+++++|..+. .++++++|+|+...... . + . + ....+.+++++|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4566776653 46778888888764332 0 0 0 1 35678999999999998865
No 295
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.01 E-value=0.0024 Score=42.97 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=29.4
Q ss_pred cccEEEecccccCcc------cHHHHHHHHHhcccCCCEEEEE
Q 025144 141 FFDAITMGYGLRNVV------DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~------~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.||+|+|..+..+++ .+..+++++++.|+|||.+++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999988866552 3788999999999999999664
No 296
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.94 E-value=0.19 Score=40.83 Aligned_cols=105 Identities=17% Similarity=0.249 Sum_probs=70.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--------
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-------- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-------- 135 (257)
....++.+||-+|+|+ |..+...++.++ -.+|..+|+++.-++.|++ +-. ..........+.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~Ga-------~~~~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-FGA-------TVTDPSSHKSSPQELAELVE 235 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-hCC-------eEEeeccccccHHHHHHHHH
Confidence 4567899999999996 778888888864 3599999999999999988 311 111111111110
Q ss_pred -CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 136 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 136 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
......+|+.+-... .+..++.....+++||.+++..+..+..
T Consensus 236 ~~~g~~~~d~~~dCsG------~~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSG------AEVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred hhccccCCCeEEEccC------chHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 122244788775443 3456677788899999988877665443
No 297
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.84 E-value=0.03 Score=46.15 Aligned_cols=53 Identities=28% Similarity=0.217 Sum_probs=41.4
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
+.+.......+-..|+|+|+|.|++++.+.-.+ +..|.+||-|+...+.|++.
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 344444455666799999999999999998664 78999999998777777653
No 298
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.80 E-value=0.19 Score=42.11 Aligned_cols=100 Identities=23% Similarity=0.334 Sum_probs=68.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC-CC-----CCCC-
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-DL-----PFSD- 139 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~-----~~~~- 139 (257)
.++.+|+=+|||+ |.++..+++.+ .-.+|+++|.++.-++.|++.... ........ +. ....
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g 236 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGG 236 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCC
Confidence 3444999999997 88888888875 346999999999999999885421 11111111 10 1112
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
..+|+++=.-. ....+..+.+.++++|.+.+.-.....
T Consensus 237 ~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 237 RGADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 36999984333 245788899999999999887665444
No 299
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.78 E-value=0.017 Score=41.77 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=62.3
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHH-HHhhhhhhhhccCCCeeEEEccCCC-CCCCCCcccEEEe
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM-ASSRQDLVSKACYKNIEWVEGDALD-LPFSDCFFDAITM 147 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-a~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~ 147 (257)
+.+.+-+|+..-+.-...++. ...++..+|.++--++. .+.++ ..+...|+.. +..-.++||.+.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~--GA~~iltveyn~L~i~~~~~dr~----------ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH--GAAKILTVEYNKLEIQEEFRDRL----------SSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHc--CCceEEEEeecccccCccccccc----------ccccHHHHHHHHHHhhccchhhhe
Confidence 457888888877766655554 24578888876521111 11111 1111122211 1112477999999
Q ss_pred cccccCcc-----c------HHHHHHHHHhcccCCCEEEEEeecCCC
Q 025144 148 GYGLRNVV-----D------KRKALEESFRVLKPGSRISVLDFNKST 183 (257)
Q Consensus 148 ~~~l~~~~-----~------~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 183 (257)
.++++|.- | -.+.+.++.++|||||.+++..+..++
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 99888771 2 256678899999999999988766544
No 300
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.047 Score=44.97 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=75.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEec
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~ 148 (257)
..+|+|-=+|+|--++..+...+ ..+++..|+||++++.++++++.... .+...++.|...+-. ....||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~---~~~~v~n~DAN~lm~~~~~~fd~IDi- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSG---EDAEVINKDANALLHELHRAFDVIDI- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCc---ccceeecchHHHHHHhcCCCccEEec-
Confidence 66999999999988887777743 33999999999999999999865421 356666666655321 2367888853
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.-+-.+..++....+.++.+|.+.+..
T Consensus 128 ---DPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 ---DPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred ---CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 334467788888888899999997754
No 301
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.077 Score=43.73 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=39.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHh---CC----CceEEEEeCChhHHHHHHhhhhh
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQV---GS----QGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~---~~----~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
..+....++|+|+|+|.++..+++.+ .| ..++..+|+|++..+.=++.++.
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 44556689999999999999888764 22 45899999999988776666654
No 302
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=95.51 E-value=0.099 Score=44.46 Aligned_cols=112 Identities=12% Similarity=0.018 Sum_probs=67.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC--CCC-CCCcccE
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPF-SDCFFDA 144 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~~~-~~~~~D~ 144 (257)
.+..++|+|.|.|.-...+.... +-..+++.||.|..|+............ ...+.+...-+.. ++. ..+.||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~--~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH--IGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh--cCchhccccchhcccCCCCcccceee
Confidence 34578889888765443332221 1245899999999999998887754110 0112222211111 232 2455999
Q ss_pred EEecccccCccc---HHHHH-HHHHhcccCCCEEEEEeecCC
Q 025144 145 ITMGYGLRNVVD---KRKAL-EESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 145 v~~~~~l~~~~~---~~~~l-~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
|++.+.++++.. ..... ...++..++|+.+++++....
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999999864 22333 334456688999988875543
No 303
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.45 E-value=0.08 Score=46.25 Aligned_cols=96 Identities=20% Similarity=0.145 Sum_probs=63.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-----------C
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-----------L 135 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-----------~ 135 (257)
.++.+|+=+|+|. |..+..+++.+ +..++++|.+++.++.++.. ...++..|..+ .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~ 229 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVM 229 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeec
Confidence 4568999999996 67777777775 56799999999887777652 11222222110 0
Q ss_pred --C--------CC--CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 136 --P--------FS--DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 136 --~--------~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
+ ++ -..+|+|+....+.-.+.+.-+.+++.+.+|||+.++
T Consensus 230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 0 11 2459999876655544455556788899999998865
No 304
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.37 E-value=0.071 Score=42.99 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=53.0
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC--CCcccEEEecc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DCFFDAITMGY 149 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~ 149 (257)
+++|+-||.|.++.-+.+. + -..+.++|.++.+++..+.+.. .. ++..|+.++... .+.+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999998888655 2 3357889999999888877752 22 566777775422 35699999877
Q ss_pred cccCc
Q 025144 150 GLRNV 154 (257)
Q Consensus 150 ~l~~~ 154 (257)
....+
T Consensus 71 PCq~f 75 (275)
T cd00315 71 PCQPF 75 (275)
T ss_pred CChhh
Confidence 65544
No 305
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.19 E-value=0.063 Score=43.28 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=72.5
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 70 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
+.+|.-||.|. |..+..++-- .+++|+.+|.|.+-+.+....+. .++.+...+..++.-.-.++|+++..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n~~rl~~ldd~f~-------~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLNIDRLRQLDDLFG-------GRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CccEEEECCccccchHHHHHhc--cCCeeEEEecCHHHHhhhhHhhC-------ceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 35788899885 7777776654 47899999999988877766652 46777777666554333578999876
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
-.+--...|.-..+++.+.+|||+.++
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEE
Confidence 555555677888999999999999885
No 306
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.08 E-value=0.25 Score=41.22 Aligned_cols=122 Identities=18% Similarity=0.140 Sum_probs=78.6
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhh-------hhhhccCCCeeEEEc
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD-------LVSKACYKNIEWVEG 130 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~-------~~~~~~~~~~~~~~~ 130 (257)
..-+.+.+...++....|+|+|.|.....++..- .-..-.|+++.+..-+.+..+.. ..+.. ...+..+++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~-~~~~~~i~g 258 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK-PNKIETIHG 258 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC-cCceeeccc
Confidence 3445556788899999999999999998887763 33467777766555444443321 12221 245788888
Q ss_pred cCCCCC---CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 131 DALDLP---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 131 d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
++.+.. .-....++|+++++... ++...-+.++..-+++|-+++-.....+
T Consensus 259 sf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 259 SFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred ccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 887642 11245788888776443 3344445688888899998876554433
No 307
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=95.00 E-value=1.4 Score=37.27 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=69.8
Q ss_pred HHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHh------CCCceEEEEeC----ChhHHHHHHhhhhhhhhccCCCeeE
Q 025144 58 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV------GSQGKVIGLDF----SKNQLSMASSRQDLVSKACYKNIEW 127 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~~v~~~D~----s~~~~~~a~~~~~~~~~~~~~~~~~ 127 (257)
.+.+++.+.-...-.|+|+|.|.|.-...|.+.+ +|..++|+++. +...++.+.+++...-....-..+|
T Consensus 99 NqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 99 NQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred hHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 3445555555566689999999998877777765 23459999999 7788888887765543222123444
Q ss_pred EEc---cCCCCC-----CCCCcccEEEecccccCccc--------HHHHHHHHHhcccCCCEEEEEe
Q 025144 128 VEG---DALDLP-----FSDCFFDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 128 ~~~---d~~~~~-----~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
... +.+++. ..++..=+|-+.+.+|++.+ ...+|+. .+.|+|.-.+ +.+
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv-~~E 243 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVV-LVE 243 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEE-EEe
Confidence 442 223321 22233333335566777741 2345554 4577888444 443
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.97 E-value=0.47 Score=32.45 Aligned_cols=87 Identities=22% Similarity=0.208 Sum_probs=55.1
Q ss_pred CCCChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEEeccccc
Q 025144 78 CGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAITMGYGLR 152 (257)
Q Consensus 78 ~G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~l~ 152 (257)
||.|..+..+++.+..+. +++.+|.+++..+.+++. .+.++.+|..+.. ..-.+.|.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 566778888877764444 899999999988777654 4779999998743 22356888876432
Q ss_pred CcccHHHHHHHHHhcccCCCEEEEE
Q 025144 153 NVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 153 ~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
-+.....+....+.+.|...+++.
T Consensus 72 -~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 72 -DDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp -SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred -CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 111222333444556677777554
No 309
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.95 E-value=0.49 Score=39.01 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=63.4
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----CCC
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PFS 138 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 138 (257)
....++.+||..|+| .|..+..+++.. +.++++++.+++..+.+++.- .. .++...-... ...
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g--------~~-~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELG--------AD-EVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhC--------CC-EEEcCCCcCHHHHHHHhc
Confidence 346678899998876 477888888875 567999999998887775421 00 1111110010 123
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+.+|+++.... ....++.+.+.|+++|.++....
T Consensus 230 ~~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 230 GGGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 456998875321 14567888999999999987643
No 310
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.92 E-value=0.21 Score=41.61 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=61.3
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE---ccCCCCCCCCC
Q 025144 66 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE---GDALDLPFSDC 140 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~ 140 (257)
...++.+||=.|+|. |..+..+++.. +. +++++|.+++-++.+++.- --.++. .+..+.....+
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~--G~~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~~~g 234 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTL--GAAEIVCADVSPRSLSLAREMG---------ADKLVNPQNDDLDHYKAEKG 234 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHHcC---------CcEEecCCcccHHHHhccCC
Confidence 344678999998874 67777777774 44 6999999998888776531 111111 11111111123
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+|+|+-.-. ....+....+.|++||.++....
T Consensus 235 ~~D~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 235 YFDVSFEVSG------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 5898874322 13456778889999999987654
No 311
>PTZ00357 methyltransferase; Provisional
Probab=94.66 E-value=0.94 Score=40.91 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=62.5
Q ss_pred eEEEecCCCChhHHHHHHH---hCCCceEEEEeCChhHHHHHHhhh---hhhhh---ccCCCeeEEEccCCCCCCCC---
Q 025144 72 NVLDVCCGSGDLSFLLSEQ---VGSQGKVIGLDFSKNQLSMASSRQ---DLVSK---ACYKNIEWVEGDALDLPFSD--- 139 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~---~~~~~~~~~~~d~~~~~~~~--- 139 (257)
.|+-+|+|-|-+....++. .+-..+++++|-++........+. ..+.. .....++++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 6899999999876555443 234568999999966443333332 12210 00145899999999875331
Q ss_pred --------CcccEEEecccccCccc---HHHHHHHHHhcccC----CCE
Q 025144 140 --------CFFDAITMGYGLRNVVD---KRKALEESFRVLKP----GSR 173 (257)
Q Consensus 140 --------~~~D~v~~~~~l~~~~~---~~~~l~~~~~~Lk~----gG~ 173 (257)
+++|+|++ -.|..+-| -.+.|.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36999986 22333322 24566677777765 675
No 312
>PRK11524 putative methyltransferase; Provisional
Probab=94.64 E-value=0.17 Score=41.03 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=39.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhh
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 115 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 115 (257)
..++..|||.-+|+|..+....+. +.+++|+|++++..+.|++++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHH
Confidence 367889999999999888766544 6799999999999999999975
No 313
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.36 E-value=0.089 Score=40.55 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=53.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh-hccCCCeeEEEccCCCCC-----CCCCcc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGDALDLP-----FSDCFF 142 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~~-----~~~~~~ 142 (257)
++.++||||.|.-..--.+--+ .-+...+|.|+++..++.|+..+...+ .. ..+++....-..-- --++.|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~~l~--~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANPGLE--RAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcccccccccce-eecceeecCccCHHHHHHHHHHHHcCcchh--hheeEEeccCcccccccccccccee
Confidence 4568999998876544333222 125689999999999999998875431 11 23444443322211 125789
Q ss_pred cEEEecccccCc
Q 025144 143 DAITMGYGLRNV 154 (257)
Q Consensus 143 D~v~~~~~l~~~ 154 (257)
|..+|+..+|..
T Consensus 155 d~tlCNPPFh~s 166 (292)
T COG3129 155 DATLCNPPFHDS 166 (292)
T ss_pred eeEecCCCcchh
Confidence 999999999865
No 314
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.33 E-value=0.049 Score=46.55 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=77.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CCCCCccc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D 143 (257)
.++.+|||.=|++|.-++..+..++...++++.|.++..++..+++.+..+.. ..+...+.|+..+ +.....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~--~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE--DIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch--hhcccccchHHHHHHhccccccccc
Confidence 34568999999999999988888765569999999999999988887643221 2344555555432 12246799
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|-+ .-+-.+..+|....+.++.||.|.+..
T Consensus 186 vIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 186 VIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred eEec----CCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 9853 233456788999999999999998754
No 315
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.32 E-value=0.15 Score=38.88 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=62.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhh----------------------------
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVS---------------------------- 118 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~---------------------------- 118 (257)
..+-++-|.+||.|.+...+.-..+ .-..+.+-|+++++++.|++++.-..
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 3456999999999998876654321 12389999999999999987643110
Q ss_pred -----------hccCCCeeEEEccCCCCC-----CCCCcccEEEecccccCc---c------cHHHHHHHHHhcccCCCE
Q 025144 119 -----------KACYKNIEWVEGDALDLP-----FSDCFFDAITMGYGLRNV---V------DKRKALEESFRVLKPGSR 173 (257)
Q Consensus 119 -----------~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~---~------~~~~~l~~~~~~Lk~gG~ 173 (257)
.+......+.+.|+.+.. ......|+|+........ . ....+|..++.+|.++++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 001123567888888731 112346999975544333 2 147789999999955555
Q ss_pred EEEE
Q 025144 174 ISVL 177 (257)
Q Consensus 174 l~~~ 177 (257)
+.+.
T Consensus 210 V~v~ 213 (246)
T PF11599_consen 210 VAVS 213 (246)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5553
No 316
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.30 E-value=0.25 Score=34.58 Aligned_cols=86 Identities=24% Similarity=0.339 Sum_probs=59.2
Q ss_pred CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----C-CCCCcccEEEeccccc
Q 025144 79 GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P-FSDCFFDAITMGYGLR 152 (257)
Q Consensus 79 G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~ 152 (257)
|.|..+..+++.. +.+++++|.+++-++.+++.- --.++..+-.++ . .+...+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~~G---------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM--GAKVIATDRSEEKLELAKELG---------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-- 67 (130)
T ss_dssp HHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTT---------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS--
T ss_pred ChHHHHHHHHHHc--CCEEEEEECCHHHHHHHHhhc---------ccccccccccccccccccccccccceEEEEecC--
Confidence 3577888899886 489999999999888887642 122333322221 1 23347999985332
Q ss_pred CcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 153 NVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 153 ~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
-...++...+.++++|.+++.....
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2567888999999999998877655
No 317
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.28 E-value=0.21 Score=34.94 Aligned_cols=87 Identities=21% Similarity=0.247 Sum_probs=51.2
Q ss_pred CeeEEEccCCCC-CCCCCcccEEEecccccCc-cc--HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhh
Q 025144 124 NIEWVEGDALDL-PFSDCFFDAITMGYGLRNV-VD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVV 199 (257)
Q Consensus 124 ~~~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~-~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (257)
.+.+..+|+.+. +--...+|+|+....-... ++ -..+++.+.+.+++||.+..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T----------------------- 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT----------------------- 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE-----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE-----------------------
Confidence 345566666441 1112678999875421111 12 27789999999999998853
Q ss_pred hhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCceeeEEeeecCceeEEEeee
Q 025144 200 VPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 256 (257)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~~~~ 256 (257)
+-....++..|.++||++.+...+ ++--..+.|.
T Consensus 89 ----------------------ys~a~~Vr~~L~~aGF~v~~~~g~-g~Kr~~~~a~ 122 (124)
T PF05430_consen 89 ----------------------YSSAGAVRRALQQAGFEVEKVPGF-GRKREMLRAV 122 (124)
T ss_dssp ----------------------S--BHHHHHHHHHCTEEEEEEE-S-TTSSEEEEEE
T ss_pred ----------------------eechHHHHHHHHHcCCEEEEcCCC-CCcchheEEE
Confidence 223467889999999997665544 4444455544
No 318
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.22 E-value=1.7 Score=35.48 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=70.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---------CCCC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---------FSDC 140 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~ 140 (257)
...|+-+|||-= ++...-..+.+..|.-+|. |+.++.-++.++..+.....+.+++..|+.+.. +..+
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 578999999853 3222111112356666665 667776666676654433347899999998432 2244
Q ss_pred cccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEe
Q 025144 141 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.--++++-+++.+++ ...++|+.|.....||..++...
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 456788888888886 46888999999999888886554
No 319
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.00 E-value=0.12 Score=40.02 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=36.7
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHh
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 112 (257)
+.+.+++.. ..++..|||.=||+|..+....+. +.+++|+|++++..+.|++
T Consensus 180 l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhh-hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 333444443 456889999999999888776654 6789999999999998864
No 320
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.78 E-value=0.61 Score=38.81 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=59.0
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccE
Q 025144 66 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 144 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 144 (257)
...++.+||-+|||. |..+..+++......+++++|.+++-++.+++ . ...... + +.. ....+|+
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~--------~~~~~~--~--~~~-~~~g~d~ 225 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A--------DETYLI--D--DIP-EDLAVDH 225 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c--------Cceeeh--h--hhh-hccCCcE
Confidence 346788999999874 55666666642124579999999887777654 1 111111 1 111 1124888
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
|+-.-.- +.....+....+.|+++|.+++...
T Consensus 226 viD~~G~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 226 AFECVGG---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EEECCCC---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 8732210 0124567788899999999987654
No 321
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.42 E-value=1.9 Score=34.02 Aligned_cols=96 Identities=28% Similarity=0.326 Sum_probs=60.4
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----CCCCC
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PFSDC 140 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~ 140 (257)
..++.+||-.|+|. |..+..+++.. +.++++++.+++..+.+++.- ...++.....+. ....+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~ 200 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELG---------ADHVIDYKEEDLEEELRLTGGG 200 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhC---------CceeccCCcCCHHHHHHHhcCC
Confidence 36788999999985 76777777774 578999999887766664431 001111110010 01235
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+|+++....- ...+..+.+.|+++|.++....
T Consensus 201 ~~d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 201 GADVVIDAVGG------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCEEEECCCC------HHHHHHHHHhcccCCEEEEEcc
Confidence 69999854321 1456677888899999876543
No 322
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.41 E-value=1.9 Score=35.63 Aligned_cols=94 Identities=14% Similarity=0.039 Sum_probs=60.4
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCccc
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 143 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 143 (257)
.+..++.+||=.|+| .|..+..+++.. +.++++++.+++-++.+++. +. . .++. ..+. ..+.+|
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~----Ga----~-~vi~--~~~~--~~~~~d 225 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALAL----GA----A-SAGG--AYDT--PPEPLD 225 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHh----CC----c-eecc--cccc--Ccccce
Confidence 466788899999976 356667777774 56899999988877776653 11 1 1111 1111 123578
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+++..... ...+....+.|+++|.+++...
T Consensus 226 ~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 226 AAILFAPA------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEEECCCc------HHHHHHHHHhhCCCcEEEEEec
Confidence 76543221 2467788899999999987654
No 323
>PRK13699 putative methylase; Provisional
Probab=93.31 E-value=0.25 Score=38.61 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=40.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 117 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 117 (257)
..++..|||.=||+|..+....+. +.+++|+|++++..+.+.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 357889999999999888776654 678999999999999999887543
No 324
>PRK11524 putative methyltransferase; Provisional
Probab=93.12 E-value=0.094 Score=42.49 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=39.0
Q ss_pred CeeEEEccCCCC--CCCCCcccEEEecccccC------c----------ccHHHHHHHHHhcccCCCEEEEE
Q 025144 124 NIEWVEGDALDL--PFSDCFFDAITMGYGLRN------V----------VDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 124 ~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~------~----------~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
+..++++|..+. .++++++|+|++.-.... . .-....+..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788888774 356789999998654321 0 01256889999999999999875
No 325
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.09 E-value=2.2 Score=35.02 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=51.3
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEEec
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAITMG 148 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~ 148 (257)
+++|+-||.|.+..-+.+. + ...+.++|+++.+.+.-+.+. + .....|+.++. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEec
Confidence 6899999999999988766 2 347899999999888877776 4 78889998864 443 59999987
Q ss_pred ccccCc
Q 025144 149 YGLRNV 154 (257)
Q Consensus 149 ~~l~~~ 154 (257)
.....+
T Consensus 69 pPCQ~f 74 (335)
T PF00145_consen 69 PPCQGF 74 (335)
T ss_dssp ---TTT
T ss_pred cCCceE
Confidence 665554
No 326
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.04 E-value=1.4 Score=36.92 Aligned_cols=98 Identities=19% Similarity=0.288 Sum_probs=60.9
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------C
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~ 136 (257)
....++.+||=.|+|. |..+..+++.. +. +++++|.+++-.+.+++. + --.++...-.+. .
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~i~~~ 240 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWAREF----G-----ATHTVNSSGTDPVEAIRAL 240 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CceEEcCCCcCHHHHHHHH
Confidence 4567788999998864 66777777774 55 599999998887777543 1 111221111111 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+|+-.-. . ...+....+.++++|.+++...
T Consensus 241 ~~~~g~d~vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 241 TGGFGADVVIDAVG-----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred hCCCCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEECC
Confidence 12235898874221 1 2456677788999999987654
No 327
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=92.55 E-value=0.095 Score=41.98 Aligned_cols=94 Identities=15% Similarity=0.292 Sum_probs=63.8
Q ss_pred CCeEEEecCCCChhHH-HHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 70 GDNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
+..|+|+=+|.|+++. ++... .-..|.++|.+|..++..++.++..... .+..+..+|-.... +....|-|...
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~--~r~~i~~gd~R~~~-~~~~AdrVnLG 269 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVM--DRCRITEGDNRNPK-PRLRADRVNLG 269 (351)
T ss_pred cchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchH--HHHHhhhccccccC-ccccchheeec
Confidence 4689999999999998 55544 2348999999999999999887654322 45666777766643 35667777653
Q ss_pred ccccCcccHHHHHHHHHhcccCCC
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGS 172 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG 172 (257)
. +|.-++......++|||.|
T Consensus 270 L----lPSse~~W~~A~k~Lk~eg 289 (351)
T KOG1227|consen 270 L----LPSSEQGWPTAIKALKPEG 289 (351)
T ss_pred c----ccccccchHHHHHHhhhcC
Confidence 3 3333334444556777733
No 328
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.49 E-value=0.44 Score=40.93 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-------CCCCCc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-------PFSDCF 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~ 141 (257)
.+..+|-+|-|.|.+...+...+ |..++++++++|+|++.+...+.-... .+..+.-.|..+. ...+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~---~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQS---DRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhh---hhhhhhHhhchHHHHHHhhccccccC
Confidence 34578999999999999988776 678999999999999999988643221 2333333333321 123567
Q ss_pred ccEEEeccc---ccCccc------HHHHHHHHHhcccCCCEEEEEeec
Q 025144 142 FDAITMGYG---LRNVVD------KRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 142 ~D~v~~~~~---l~~~~~------~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
||++...-. .|-... ...+|..++.+|.|.|.+++.-..
T Consensus 371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred CcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 999885211 222221 356788999999999999654433
No 329
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.35 E-value=1 Score=37.61 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeC---ChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CCCCC
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDF---SKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDC 140 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~ 140 (257)
..++.+||=+|+|. |.++..+++.. +.++++++. +++-++.+++. + ...+...-.+. ....+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~----G------a~~v~~~~~~~~~~~~~~ 237 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEEL----G------ATYVNSSKTPVAEVKLVG 237 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHc----C------CEEecCCccchhhhhhcC
Confidence 45678999999874 77778888874 568999986 56555555432 1 11111110110 01124
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.+|+|+-.-. -...+....+.|+++|.+++....
T Consensus 238 ~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 238 EFDLIIEATG------VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred CCCEEEECcC------CHHHHHHHHHHccCCcEEEEEecC
Confidence 6898875332 123677888999999998776543
No 330
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.16 E-value=1.9 Score=36.37 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=60.9
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----CC
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PF 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~ 137 (257)
..+.++.+||=.|+|. |..+..+++.. +. +|+++|.+++-++.+++.- --.++..+-.+. ..
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~~G---------a~~~i~~~~~~~~~~i~~~ 255 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARELG---------ATATVNAGDPNAVEQVREL 255 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHHcC---------CceEeCCCchhHHHHHHHH
Confidence 4567788999999864 66777777774 55 6999999998887775431 111221111111 01
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..+.+|+|+-.-. -...+....+.++++|.++....
T Consensus 256 ~~~g~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 256 TGGGVDYAFEMAG------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred hCCCCCEEEECCC------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 1235898874221 13456677788999999877654
No 331
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=92.12 E-value=0.22 Score=40.79 Aligned_cols=115 Identities=22% Similarity=0.198 Sum_probs=77.0
Q ss_pred HHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHH-------HHhhhhhhhhccCCCeeEEEccC
Q 025144 60 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM-------ASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 60 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-------a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
.+.......+|.-|.|-=.|||.+....+.. ++.|+|.|++-.++.. .+.++++.+.. ..-+.++.+|.
T Consensus 199 i~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~-~~fldvl~~D~ 274 (421)
T KOG2671|consen 199 IMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-SQFLDVLTADF 274 (421)
T ss_pred HHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc-chhhheeeecc
Confidence 3344556789999999999999998887765 6899999998887762 22344443311 02366788888
Q ss_pred CCCCC-CCCcccEEEeccccc------------------------Cccc---------HHHHHHHHHhcccCCCEEEEEe
Q 025144 133 LDLPF-SDCFFDAITMGYGLR------------------------NVVD---------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 133 ~~~~~-~~~~~D~v~~~~~l~------------------------~~~~---------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+.+. .+..||.|+|..... |.+. ...+|.-..+.|..||++++.-
T Consensus 275 sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 275 SNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred cCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 87653 356799999843311 1111 2334666778888899887653
No 332
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.11 E-value=1.3 Score=35.39 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=67.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC---CCcccE
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS---DCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~ 144 (257)
-.+..|+-+| ..-..++.++-. +...++..+|++...+...++..++.+. .++..+..|+.+ |+| ...||+
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~---~~ie~~~~Dlr~-plpe~~~~kFDv 224 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGY---NNIEAFVFDLRN-PLPEDLKRKFDV 224 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCc---cchhheeehhcc-cChHHHHhhCCe
Confidence 3466799998 333333333322 3455899999999999988887766553 579999999988 333 367998
Q ss_pred EEecccccCcccHHHHHHHHHhcccCC---CEEEEEe
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPG---SRISVLD 178 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~g---G~l~~~~ 178 (257)
.+... -..++....++.+=...||.- |++.+..
T Consensus 225 fiTDP-peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 225 FITDP-PETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred eecCc-hhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 87532 233334555666666677665 5665543
No 333
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.93 E-value=3 Score=34.53 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=59.6
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC---CC-C-C
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL---DL-P-F 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~-~-~ 137 (257)
....++.+||=+|+|. |..+..+++.. +.+ +++++.+++-.+.+++.- --.++...-. .+ . .
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~~g---------a~~~i~~~~~~~~~~~~~~ 227 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKALG---------ADFVINSGQDDVQEIRELT 227 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhC---------CCEEEcCCcchHHHHHHHh
Confidence 4567788999998763 56667777774 456 999999888777765431 1111111110 00 0 1
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
....+|+|+-... ....+....+.|+++|.+++...
T Consensus 228 ~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 228 SGAGADVAIECSG------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 2236899984321 13345667788999999977653
No 334
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=91.50 E-value=1.1 Score=33.68 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=57.2
Q ss_pred HHHHHHHhhhCCCCC-CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 56 IWKRMAVSWSGAKTG-DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 56 ~~~~~~~~~~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
.+...+...+...++ ..|+.+|||-=.....+.... ++..+.-+|. |++++.-++.++..+.....+.+++..|+.+
T Consensus 64 ~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 64 YIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp HHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTT-TTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred HHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccc-cceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 333444444433334 389999999766655555431 2557777776 5666666666655422111346679999986
Q ss_pred CC---------CCCCcccEEEecccccCcc--cHHHHHHH
Q 025144 135 LP---------FSDCFFDAITMGYGLRNVV--DKRKALEE 163 (257)
Q Consensus 135 ~~---------~~~~~~D~v~~~~~l~~~~--~~~~~l~~ 163 (257)
.. +..+..-++++-.++.+++ +...+|+.
T Consensus 142 ~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 142 DSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp HHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHH
T ss_pred hhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHH
Confidence 31 2345556777777788775 23444443
No 335
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.48 E-value=4.4 Score=33.84 Aligned_cols=97 Identities=21% Similarity=0.157 Sum_probs=61.9
Q ss_pred hCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc----cCCC-C-C
Q 025144 65 SGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DALD-L-P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~-~-~ 136 (257)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++-.+.+++.+ + --.++.. +..+ . .
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~l---G-----a~~vi~~~~~~~~~~~i~~ 223 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKL---G-----FDEAFNYKEEPDLDAALKR 223 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhc---C-----CCEEEECCCcccHHHHHHH
Confidence 45678889999987 3688888888885 578999998887777665332 1 1112221 1110 0 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...+.+|+|+-.-. ...+....+.|+++|.+++..
T Consensus 224 ~~~~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 224 YFPEGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred HCCCCcEEEEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 11246898874321 246677888999999987654
No 336
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.45 E-value=1.1 Score=31.19 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=47.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-CCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~ 147 (257)
...+|+|+|-|.-......++.. +..++++|+.+. .+. ..+.++..|+.+.... =...|+|++
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~-----------~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP-----------EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc-----------cCcceeeecccCCCHHHhcCCcEEEE
Confidence 34499999999865544444442 589999999886 111 3678999999885311 135899998
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
... -+++...+.++.+. -|.-+++..+..
T Consensus 77 iRP---P~El~~~il~lA~~--v~adlii~pL~~ 105 (127)
T PF03686_consen 77 IRP---PPELQPPILELAKK--VGADLIIRPLGG 105 (127)
T ss_dssp ES-----TTSHHHHHHHHHH--HT-EEEEE-BTT
T ss_pred eCC---ChHHhHHHHHHHHH--hCCCEEEECCCC
Confidence 554 23445555555553 356677766554
No 337
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.44 E-value=0.39 Score=40.55 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=50.4
Q ss_pred CCeeEEEccCCCCC--CCCCcccEEEecccccCcc--cHHHHHHHHHhcccCCCEEEEEeecCC
Q 025144 123 KNIEWVEGDALDLP--FSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS 182 (257)
Q Consensus 123 ~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 182 (257)
+++++.++++.+.. .+++++|.+++.....+++ +..+.++.+.+.++|||++++-....+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 68999999998752 5679999999999999886 467789999999999999988665543
No 338
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.15 E-value=2.1 Score=29.26 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=54.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-CCcccEEEec
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMG 148 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~ 148 (257)
..+|+|+|.|-=......++.. +..++++|+++. +.. ..++++..|+.+.... -...|+|++.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~-------~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP-------EGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc-------ccceEEEccCCCccHHHhhCccceeec
Confidence 4499999988754443333332 589999999875 111 3688999999985421 1447888764
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
- -.+++...+-.+.+. .|..+++.....
T Consensus 78 R---pppEl~~~ildva~a--Vga~l~I~pL~G 105 (129)
T COG1255 78 R---PPPELQSAILDVAKA--VGAPLYIKPLTG 105 (129)
T ss_pred C---CCHHHHHHHHHHHHh--hCCCEEEEecCC
Confidence 3 233444444444443 344565654443
No 339
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.15 E-value=4.2 Score=33.55 Aligned_cols=93 Identities=22% Similarity=0.317 Sum_probs=57.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc---CCCCCCCCCccc
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD---ALDLPFSDCFFD 143 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~D 143 (257)
++.+||-.|+|. |..+..+++.. +. .+++++.++...+.+++.- --.++..+ ........+.+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~g---------~~~vi~~~~~~~~~~~~~~~~vd 233 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAMG---------ADETVNLARDPLAAYAADKGDFD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcC---------CCEEEcCCchhhhhhhccCCCcc
Confidence 778899988775 66777777774 45 7899998888777554421 00111111 111111123589
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++-... ....+..+.+.|+++|.++...
T Consensus 234 ~vld~~g------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 234 VVFEASG------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 9985432 1345778889999999987654
No 340
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.08 E-value=2.8 Score=33.75 Aligned_cols=97 Identities=19% Similarity=0.099 Sum_probs=59.3
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCC-C-C-CCC
Q 025144 66 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALD-L-P-FSD 139 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~-~-~-~~~ 139 (257)
...++.+||=+|+|. |..+..+++.. +.+ ++++|.+++-++.+++.-. -.++.. +... . . ...
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~~Ga---------~~~i~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALSFGA---------TALAEPEVLAERQGGLQNG 185 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcCC---------cEecCchhhHHHHHHHhCC
Confidence 345788999998864 66777777774 454 8899988887776655311 011110 0000 0 0 122
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..+|+++-.-. ....+....+.++++|.+++...
T Consensus 186 ~g~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 186 RGVDVALEFSG------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEecc
Confidence 35898874221 13467778889999999987664
No 341
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.99 E-value=6 Score=32.50 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=61.8
Q ss_pred hhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC-CC----
Q 025144 63 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-DL---- 135 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~---- 135 (257)
...+..++.+||=.|+ |.|..+..+++.. +.++++++.+++-.+.+++. + --.++..+-. ..
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~l----G-----a~~vi~~~~~~~~~~~~ 200 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKL----G-----FDVAFNYKTVKSLEETL 200 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C-----CCEEEeccccccHHHHH
Confidence 3456778889998884 4688888888874 56899999888877776542 1 1112211110 11
Q ss_pred -CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....+.+|+|+-.-. ...+....+.|+++|.++...
T Consensus 201 ~~~~~~gvdvv~d~~G-------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 201 KKASPDGYDCYFDNVG-------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred HHhCCCCeEEEEECCC-------HHHHHHHHHHhCcCcEEEEec
Confidence 112346898874221 134577888999999998654
No 342
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.82 E-value=2.9 Score=35.81 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=57.4
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
.++.+|+=+|+|. |......++.+ +.+|+++|.++.-.+.|+.. ...... ..+. . ...|+|+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~----------G~~~~~--~~e~-v--~~aDVVI 262 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME----------GYEVMT--MEEA-V--KEGDIFV 262 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc----------CCEEcc--HHHH-H--cCCCEEE
Confidence 4688999999996 66666666664 56899999998776666542 111111 1111 1 2479998
Q ss_pred ecccccCcccHHHHHHH-HHhcccCCCEEEEEee
Q 025144 147 MGYGLRNVVDKRKALEE-SFRVLKPGSRISVLDF 179 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~-~~~~Lk~gG~l~~~~~ 179 (257)
..-. ....+.. ..+.+|+||.++....
T Consensus 263 ~atG------~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 263 TTTG------NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ECCC------CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 6321 2334544 4788999999876653
No 343
>PRK06940 short chain dehydrogenase; Provisional
Probab=90.42 E-value=5.2 Score=32.06 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=60.7
Q ss_pred eEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C----CCCcc
Q 025144 72 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----SDCFF 142 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~~~~~ 142 (257)
.+|=-|+ |.+...+++.+..+.+|+.+|.+++.++...+.++..+ .++.++..|+.+.. + ..+..
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG----FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4444453 56888888777667899999988766655544443221 36778888987742 1 12568
Q ss_pred cEEEecccccCc-cc-----------HHHHHHHHHhcccCCCEEEEE
Q 025144 143 DAITMGYGLRNV-VD-----------KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 143 D~v~~~~~l~~~-~~-----------~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|+++.+...... .+ ...+++.+.+.++++|.++++
T Consensus 78 d~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 78 TGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred CEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 999976654322 12 123355566666666655443
No 344
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.06 E-value=0.64 Score=39.23 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=53.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
++.+|+=+|+| .|..+...+..+ +.+|+++|.+++-++.+...+. ..+.....+..++.-.-..+|+|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEE
Confidence 44679999998 466666666664 5689999998876665544331 1111111111111100135899996
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
.-.......+.-+-+...+.++|++.++-
T Consensus 237 a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 237 AVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred ccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 53221111121122455566788887654
No 345
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.85 E-value=6.9 Score=32.02 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=61.4
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----C
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~ 136 (257)
..+..++.+||=.|+ |.|..+..+++.. +.++++++.+++-.+.+++. + --.++...-.+. .
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~----G-----a~~vi~~~~~~~~~~v~~ 206 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKEL----G-----FDAVFNYKTVSLEEALKE 206 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C-----CCEEEeCCCccHHHHHHH
Confidence 345677889998884 4577888888875 56899999888877776552 1 111222111111 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...+.+|+|+-.-. ...+....+.|+++|.++...
T Consensus 207 ~~~~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 207 AAPDGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HCCCCcEEEEECCC-------HHHHHHHHHhhccCCEEEEEc
Confidence 11245898874221 245678888999999987653
No 346
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.72 E-value=2.6 Score=34.23 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=54.2
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc--------------CCCeeEEEccCCCC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------YKNIEWVEGDALDL 135 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~d~~~~ 135 (257)
.+|--||+|+ |.-....... .+.+|+.+|.+++.++.+.+++...-... ..+++ ...|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh
Confidence 3788899985 4333333222 37899999999999988776643211000 01111 22333221
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcc-cCCCEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRIS 175 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-k~gG~l~ 175 (257)
...|+|+-. +....+-...++..+-+.+ +|+..+.
T Consensus 83 ----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~ 118 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLA 118 (286)
T ss_pred ----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 346887743 3333333456677777777 5665553
No 347
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=89.66 E-value=1.5 Score=33.73 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=48.1
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
+.+.+....+.-.+.-|.+||.|.|..++.+.+. .-.....++.+...+.-.+...+..+ .+..+..+|+...
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~----~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP----GKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC----cceEEecccccee
Confidence 3444555555556678999999999999999876 23478888887766555444333222 3566666666543
No 348
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.65 E-value=1.5 Score=37.10 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=48.0
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEE
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 145 (257)
.+||=||||. |....+.+.+. ...+|+..|-|.+....+..... .+++..+.|+.+.+ .- ..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~~-------~~v~~~~vD~~d~~al~~li-~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELIG-------GKVEALQVDAADVDALVALI-KDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhcc-------ccceeEEecccChHHHHHHH-hcCCEE
Confidence 4789999964 55554443331 23799999999887777665431 47889999998863 11 335999
Q ss_pred Eeccc
Q 025144 146 TMGYG 150 (257)
Q Consensus 146 ~~~~~ 150 (257)
+....
T Consensus 73 In~~p 77 (389)
T COG1748 73 INAAP 77 (389)
T ss_pred EEeCC
Confidence 86543
No 349
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.59 E-value=6.8 Score=32.13 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=60.3
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CCCCcc
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFF 142 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 142 (257)
....++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++.- . . .++...-.... ...+.+
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g----~----~-~~~~~~~~~~~~~~~~~~ 226 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLG----A----D-EVVDSGAELDEQAAAGGA 226 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhC----C----c-EEeccCCcchHHhccCCC
Confidence 456778899999887 577777777774 568999999888877764321 0 0 11111100000 012458
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
|+++.... ....+..+.+.|+++|.++...
T Consensus 227 d~vi~~~~------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 227 DVILVTVV------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CEEEECCC------cHHHHHHHHHhcccCCEEEEEC
Confidence 98875321 1245677788999999987664
No 350
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=89.54 E-value=13 Score=33.01 Aligned_cols=108 Identities=18% Similarity=0.268 Sum_probs=63.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC---CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC-CCC-CCCccc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVG---SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPF-SDCFFD 143 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D 143 (257)
|+..|.|..||+|.+.....+..+ ....+++.+..+.+...+..+..-.+... .......+|-.. ..+ ...+||
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~-~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY-ANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc-cccCcccCCcCCCccccccccCC
Confidence 557999999999998876544321 12469999999999988887642211100 122232333322 111 234578
Q ss_pred EEEecccccC---------------------cc----cHHHHHHHHHhcccCCCEEEEE
Q 025144 144 AITMGYGLRN---------------------VV----DKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 144 ~v~~~~~l~~---------------------~~----~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.|+++..+.. ++ .-..++..+..+|++||...++
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 8776543211 11 1244577788899999975544
No 351
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.36 E-value=1.3 Score=37.44 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=39.1
Q ss_pred HHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh
Q 025144 61 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 61 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
..+.+.+.++.+||-|++|-......+.+. | .+|++||+|+......+-+...
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~--P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAG--P-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcC--C-ceEEEEeCCHHHHHHHHHHHHH
Confidence 345678899999999987655555555432 3 6999999999988877766543
No 352
>PLN02740 Alcohol dehydrogenase-like
Probab=89.25 E-value=6 Score=33.49 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=60.7
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC--C-----
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--L----- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~----- 135 (257)
....++.+||=+|+|. |..+..+++.. +. +|+++|.+++-++.+++. + --.++...-.+ +
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~~----G-----a~~~i~~~~~~~~~~~~v~ 262 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKEM----G-----ITDFINPKDSDKPVHERIR 262 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHHc----C-----CcEEEecccccchHHHHHH
Confidence 4567888999999874 66777777774 45 699999999888877543 1 11122211100 0
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
....+.+|+|+-.-. ....+....+.+++| |.+++...
T Consensus 263 ~~~~~g~dvvid~~G------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 263 EMTGGGVDYSFECAG------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred HHhCCCCCEEEECCC------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 011236898874322 134566777788886 98876554
No 353
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.02 E-value=6.3 Score=32.73 Aligned_cols=98 Identities=17% Similarity=0.306 Sum_probs=58.6
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC---C--CC
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD---L--PF 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~--~~ 137 (257)
....++.+||=.|+|. |..+..+++.. +.+ +++++.+++-.+.+++. + --.++..+-.+ . ..
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~~~~~ 224 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSL----G-----AMQTFNSREMSAPQIQSVL 224 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc----C-----CceEecCcccCHHHHHHHh
Confidence 4556788999998864 66677777774 454 78999888877766432 1 11111111100 0 01
Q ss_pred CCCccc-EEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 138 SDCFFD-AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D-~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
....+| +|+-.- .-...+....+.|++||.+++...
T Consensus 225 ~~~~~d~~v~d~~------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 225 RELRFDQLILETA------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred cCCCCCeEEEECC------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 223577 554211 113567788899999999987654
No 354
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=88.90 E-value=7.6 Score=28.59 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=60.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-CC---CCccc
Q 025144 68 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS---DCFFD 143 (257)
Q Consensus 68 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~~---~~~~D 143 (257)
.+..+|+-|||=+- -..+.+...++.++...|++..--. .+ ++ .+..-|..... ++ .++||
T Consensus 24 ~~~~~iaclstPsl--~~~l~~~~~~~~~~~Lle~D~RF~~--------~~----~~-~F~fyD~~~p~~~~~~l~~~~d 88 (162)
T PF10237_consen 24 LDDTRIACLSTPSL--YEALKKESKPRIQSFLLEYDRRFEQ--------FG----GD-EFVFYDYNEPEELPEELKGKFD 88 (162)
T ss_pred CCCCEEEEEeCcHH--HHHHHhhcCCCccEEEEeecchHHh--------cC----Cc-ceEECCCCChhhhhhhcCCCce
Confidence 34579999987653 3334332235678999998764322 11 23 56677776532 11 47899
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|++.-.+-.-+-..+....++.++|+++.+++.+
T Consensus 89 ~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 89 VVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 99998887333334555666666778888887654
No 355
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=88.86 E-value=7.9 Score=32.02 Aligned_cols=96 Identities=11% Similarity=0.086 Sum_probs=58.8
Q ss_pred CCCCC--CeEEEecC--CCChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----
Q 025144 66 GAKTG--DNVLDVCC--GSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 135 (257)
Q Consensus 66 ~~~~~--~~vLdiG~--G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----- 135 (257)
+..++ .+||=.|+ |.|..+..+++.. +. ++++++.+++..+.+++.+. --.++..+-.++
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~lG--------a~~vi~~~~~~~~~~i~ 218 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSELG--------FDAAINYKTDNVAERLR 218 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhcC--------CcEEEECCCCCHHHHHH
Confidence 44544 78988886 4677888888875 55 79999988877776655331 111222111111
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...++.+|+|+-... . ..+....+.|+++|.++...
T Consensus 219 ~~~~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 219 ELCPEGVDVYFDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHCCCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 011246899874321 1 23467788899999987653
No 356
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=88.72 E-value=8.1 Score=31.85 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=61.6
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------C
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~ 136 (257)
.....++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++.- --.++...-.++ .
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~~g---------~~~v~~~~~~~~~~~l~~~ 222 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARELG---------ADDTINVGDEDVAARLREL 222 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHHhC---------CCEEecCcccCHHHHHHHH
Confidence 34667788999998764 67778888874 678999988887777664321 111111111110 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+...+|+++.... ....+..+.+.|+++|.++...
T Consensus 223 ~~~~~vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 223 TDGEGADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred hCCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 12345899985421 1345677888999999987654
No 357
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.65 E-value=3.5 Score=33.75 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
++.+||=+|+|. |.++..+++.. +. .+.++|.+++.++.+... .++ |..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~--G~~~v~~~~~~~~rl~~a~~~------------~~i--~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA--GGSPPAVWETNPRRRDGATGY------------EVL--DPEKD--PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHhhhhc------------ccc--Chhhc--cCCCCCEEE
Confidence 466899889874 77788888875 44 477788877665554321 011 11110 124589887
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
-.-. -...+..+.+.|+++|.+++.-.
T Consensus 206 d~~G------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 206 DASG------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ECCC------CHHHHHHHHHhhhcCcEEEEEee
Confidence 4322 23466788889999999987654
No 358
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.18 E-value=7 Score=32.10 Aligned_cols=98 Identities=24% Similarity=0.247 Sum_probs=60.7
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC----CC
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PF 137 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----~~ 137 (257)
.....++.+||-+|+|. |..+..+++.. +.+ +++++.+++..+.+++.- --.++..+-.+. ..
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~ 222 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKLG---------ATETVDPSREDPEAQKED 222 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhC---------CeEEecCCCCCHHHHHHh
Confidence 44567788999998753 66677777774 455 888998888777664321 112222221111 11
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+.+|+++.... ....+....+.|+++|.++...
T Consensus 223 ~~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 223 NPYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred cCCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 2356899985321 1356777788899999987654
No 359
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=88.07 E-value=11 Score=31.32 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=62.8
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--CC-C
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PF-S 138 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--~~-~ 138 (257)
..+..++.+||=.|+ |.|.++..|++.+ +..+.++-.+++-.+.+++.-.. .-+.+...|+.+- .. .
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~~lGAd------~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLKELGAD------HVINYREEDFVEQVRELTG 208 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHhcCCC------EEEcCCcccHHHHHHHHcC
Confidence 456777899999995 4567888999885 44666776666555544443211 1122233332221 12 2
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
...+|+|+-.-. ...+.+..+.|+++|.++.....
T Consensus 209 g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 209 GKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEecC
Confidence 236999985432 45667788899999998776543
No 360
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.88 E-value=2 Score=34.29 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=60.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhC----CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC---CC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVG----SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SD 139 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~ 139 (257)
+.++..++|+|||.|.++.++++.+. +...++.||-...-. .+..+....... +.+.-+..|+.++.+ +.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~--~~~~R~riDI~dl~l~~~~~ 92 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESE--PKFERLRIDIKDLDLSKLPE 92 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCC--CceEEEEEEeeccchhhccc
Confidence 35677999999999999999998863 346899999744222 222222211100 245666667666531 11
Q ss_pred ----CcccEEEecccccCcccHHHHHHHHHhccc-------CCCEEEEEeec
Q 025144 140 ----CFFDAITMGYGLRNVVDKRKALEESFRVLK-------PGSRISVLDFN 180 (257)
Q Consensus 140 ----~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk-------~gG~l~~~~~~ 180 (257)
..-=++++-+....-.| -.|+.+.+..+ ..|.++....+
T Consensus 93 ~~~~~~~vv~isKHLCG~ATD--laLRcl~~~~~~~~~~~~~~gi~iA~CCH 142 (259)
T PF05206_consen 93 LQNDEKPVVAISKHLCGAATD--LALRCLLNSQKLSEGNGSVRGIVIAPCCH 142 (259)
T ss_pred ccCCCCcEEEEEccccccchh--HHHHhhccCccccccCCccCeEEEEeCCC
Confidence 11123444444333333 34555554443 56777665543
No 361
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=87.87 E-value=0.96 Score=40.12 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=61.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------C
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------F 137 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~ 137 (257)
.+.+...|||+||.+|.+....++.++.+.-|+|+|+-|-- ..+++...+.|+..-. .
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~cr~~l~k~l 106 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDECRSKLRKIL 106 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHHHHHHHHHH
Confidence 34677899999999999999999998888899999986521 0145555555554321 1
Q ss_pred CCCcccEEEeccc----ccCccc-------HHHHHHHHHhcccCCCEEE
Q 025144 138 SDCFFDAITMGYG----LRNVVD-------KRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 138 ~~~~~D~v~~~~~----l~~~~~-------~~~~l~~~~~~Lk~gG~l~ 175 (257)
..-+.|+|+...+ ..+..| ....++-....|+.||.++
T Consensus 107 ~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 107 KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 1234577764222 111112 2334666677888899853
No 362
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.73 E-value=11 Score=29.13 Aligned_cols=103 Identities=20% Similarity=0.195 Sum_probs=59.9
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----C
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 138 (257)
+.+||-.|++ |.....+++.+ ..+.+|++++.+++-.+...+..... .++.++..|+.+.. + .
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 5688888874 54555554443 24679999998877665543333221 36788889888642 0 0
Q ss_pred CCcccEEEecccccCc---cc--------------HHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNV---VD--------------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~---~~--------------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+..|.++.+...... .+ ...+++.+.+.++++|.+++..
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1346888765542211 01 1233555666667788776654
No 363
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.71 E-value=7.5 Score=32.13 Aligned_cols=97 Identities=19% Similarity=0.313 Sum_probs=57.8
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCC-ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------C
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~ 136 (257)
.+..++.+||-.|+| .|..+..+++.. + ..+.+++.++...+.+++.- -..++...-.+. .
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~--g~~~v~~~~~~~~~~~~~~~~g---------~~~vi~~~~~~~~~~i~~~ 231 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLL--GAARIIAVDSNPERLDLAKEAG---------ATDIINPKNGDIVEQILEL 231 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHhC---------CcEEEcCCcchHHHHHHHH
Confidence 345677889887775 366777777775 4 37888887776666554321 111111111110 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+.+.+|+++-... ....+....+.|+++|.++...
T Consensus 232 ~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 232 TGGRGVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cCCCCCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 12356898885321 1246777888999999987553
No 364
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=87.71 E-value=6.8 Score=31.19 Aligned_cols=97 Identities=22% Similarity=0.295 Sum_probs=59.6
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCc
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 141 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (257)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++.-.. ..+ ....- . ......
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~g~~------~~~--~~~~~-~-~~~~~~ 159 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEALGPA------DPV--AADTA-D-EIGGRG 159 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHcCCC------ccc--cccch-h-hhcCCC
Confidence 34567788999998865 66777777775 455 99999888877765543100 111 11000 0 012346
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+++-... ....+....+.++++|.++...
T Consensus 160 ~d~vl~~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 160 ADVVIEASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCEEEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 898875321 1235677788899999987654
No 365
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.64 E-value=1.4 Score=32.08 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=25.4
Q ss_pred EecCCCC--hhHHHHH-HHhCCCceEEEEeCChhHHHHHHhh
Q 025144 75 DVCCGSG--DLSFLLS-EQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 75 diG~G~G--~~~~~l~-~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
|||++.| .....+. +..++..+++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 2345678999999999999888888
No 366
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=87.62 E-value=3 Score=30.00 Aligned_cols=106 Identities=15% Similarity=0.072 Sum_probs=48.7
Q ss_pred HHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-C-
Q 025144 59 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 136 (257)
Q Consensus 59 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~- 136 (257)
.+........+ .-|||+|=|.|+.--+|.+.+ |+.++.++|-.-..-. .-.+ +.-.++.+|+.+. +
T Consensus 19 ~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l~~hp------~~~P----~~~~~ilGdi~~tl~~ 86 (160)
T PF12692_consen 19 NWAAAQVAGLP-GPVLELGLGNGRTYDHLREIF-PDRRIYVFDRALACHP------SSTP----PEEDLILGDIRETLPA 86 (160)
T ss_dssp HHHHHHTTT---S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G------GG-------GGGEEES-HHHHHHH
T ss_pred HHHHHHhcCCC-CceEEeccCCCccHHHHHHhC-CCCeEEEEeeecccCC------CCCC----chHheeeccHHHHhHH
Confidence 33333333333 479999999999999999997 7889999995221100 0000 2345677776542 1
Q ss_pred --CCCCcccEEEecccccCccc----HHHHHHHHHhcccCCCEEEE
Q 025144 137 --FSDCFFDAITMGYGLRNVVD----KRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~ 176 (257)
....+.-++......++-+. ...+-.-+..+|.|||.++-
T Consensus 87 ~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 87 LARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 11122223333222332221 11223345668899998864
No 367
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.57 E-value=6.3 Score=29.52 Aligned_cols=99 Identities=17% Similarity=0.093 Sum_probs=57.0
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh-----hc---------cCCCeeEEEccCCCCC
Q 025144 72 NVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-----KA---------CYKNIEWVEGDALDLP 136 (257)
Q Consensus 72 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-----~~---------~~~~~~~~~~d~~~~~ 136 (257)
+|.=+|+|+ |.-...+... .+.+|+.+|.+++.++.+++++...- .. ...++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 366788875 5433333333 37899999999999988887765410 00 011333 34454443
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...|+|+=. +...++-...+++++.+.+.|+-.|.-.+
T Consensus 77 ---~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 77 ---VDADLVIEA-IPEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp ---CTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred ---hhhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 147888632 23344445778999999999988775443
No 368
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=87.52 E-value=6 Score=33.22 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=55.3
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCCCCCCcccE
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFDA 144 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~ 144 (257)
..++.+||-.|+|. |..+..+++.. +.++++++.+++....+.+.+ + --.++.. +........+.+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~---G-----a~~vi~~~~~~~~~~~~~~~D~ 250 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRL---G-----ADSFLVSTDPEKMKAAIGTMDY 250 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhC---C-----CcEEEcCCCHHHHHhhcCCCCE
Confidence 45678888898874 77777788775 567888887765433332222 1 0111111 10011000124788
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
|+-.-. ....+....+.|+++|.++....
T Consensus 251 vid~~g------~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 251 IIDTVS------AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred EEECCC------CHHHHHHHHHHhcCCcEEEEeCC
Confidence 874321 13356778889999999887643
No 369
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.42 E-value=10 Score=31.40 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=60.6
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC------
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD------ 134 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~------ 134 (257)
......++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++. + --.++..+-.+
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~~~ 224 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKEL----G-----ATHTVNVRTEDTPESAE 224 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHc----C-----CcEEeccccccchhHHH
Confidence 345667888898888765 67777788774 555 88888887776666442 1 11111111111
Q ss_pred -C--CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 135 -L--PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 135 -~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+ ......+|+|+-... ....+....+.|+++|.++...
T Consensus 225 ~~~~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 225 KIAELLGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HHHHHhCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 0 122345899985432 1235677888999999987654
No 370
>PLN02827 Alcohol dehydrogenase-like
Probab=87.17 E-value=9.8 Score=32.19 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=58.8
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc-----CCC-C-
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-----ALD-L- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~- 135 (257)
....++.+||-.|+|. |..+..+++.. +. .++++|.+++-.+.+++. +. -.++... ... +
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~l----Ga-----~~~i~~~~~~~~~~~~v~ 257 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKTF----GV-----TDFINPNDLSEPIQQVIK 257 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc----CC-----cEEEcccccchHHHHHHH
Confidence 4567788999998864 66677777774 44 588999888877766442 11 1111111 000 0
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
....+.+|+|+-.-. ....+....+.+++| |.+++...
T Consensus 258 ~~~~~g~d~vid~~G------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 258 RMTGGGADYSFECVG------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred HHhCCCCCEEEECCC------ChHHHHHHHHhhccCCCEEEEECC
Confidence 011235898874321 123566777888998 99876543
No 371
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=87.06 E-value=1.9 Score=34.89 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=23.5
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+.||+|++....-++-.+. +.++++|+|.|++-.
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEt 254 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVET 254 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEc
Confidence 6799999766644443323 677889999986643
No 372
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.05 E-value=12 Score=31.53 Aligned_cols=99 Identities=13% Similarity=0.201 Sum_probs=60.6
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEcc-----CCC-C
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-----ALD-L 135 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-----~~~-~ 135 (257)
.....++.+||=.|+|. |..+..+++.. +. +|+++|.+++-++.+++. + --.++... ... +
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~~----G-----a~~~i~~~~~~~~~~~~v 248 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMA--KASRIIAIDINPAKFELAKKL----G-----ATDCVNPNDYDKPIQEVI 248 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHh----C-----CCeEEcccccchhHHHHH
Confidence 34567788999999864 66777788774 55 799999999888877543 1 11111110 000 0
Q ss_pred -CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...++.+|+++-.-. -...+....+.++++ |.+++...
T Consensus 249 ~~~~~~g~d~vid~~G------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 249 VEITDGGVDYSFECIG------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred HHHhCCCCCEEEECCC------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 011235888874321 134566777888886 98876654
No 373
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.89 E-value=11 Score=31.38 Aligned_cols=98 Identities=22% Similarity=0.331 Sum_probs=60.4
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----C-
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P- 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~- 136 (257)
....++.+||-.|+| .|..+..+++.. +. .++++|.+++..+.+++. + --.++..+-.+. .
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~----g-----~~~~v~~~~~~~~~~i~~~ 230 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKEY----G-----ATDIVDYKNGDVVEQILKL 230 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc----C-----CceEecCCCCCHHHHHHHH
Confidence 456778899999876 366777777775 44 589999988777666542 1 111221111111 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.....+|+++-... ....+..+.+.|+++|.++....
T Consensus 231 ~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 231 TGGKGVDAVIIAGG------GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred hCCCCCcEEEECCC------CHHHHHHHHHHhhcCCEEEEecc
Confidence 12345898874221 13467788889999999876543
No 374
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.68 E-value=15 Score=30.41 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=62.2
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc----cCCC-C-
Q 025144 64 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DALD-L- 135 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~-~- 135 (257)
..+..++.+||=.|+ |.|..+..+++.. +.++++++.+++-.+.+++.+ +. . .++.. +..+ .
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~l---Ga---~--~vi~~~~~~~~~~~i~ 215 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKL---GF---D--DAFNYKEEPDLDAALK 215 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc---CC---c--eeEEcCCcccHHHHHH
Confidence 346678889999986 4577888888874 678999998887777766533 10 1 11211 1110 0
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....+.+|+|+-... ...+....+.|+++|.++...
T Consensus 216 ~~~~~gvd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 216 RYFPNGIDIYFDNVG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred HhCCCCcEEEEECCC-------HHHHHHHHHHhccCcEEEEec
Confidence 011246898874321 245678889999999987653
No 375
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=86.44 E-value=15 Score=30.39 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=59.6
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC---CC-C-
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL---DL-P- 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~-~- 136 (257)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++. + -..++..+-. .+ .
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~~~----g-----~~~~~~~~~~~~~~~~~~ 222 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVAREL----G-----ADDTINPKEEDVEKVREL 222 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHc----C-----CCEEecCccccHHHHHHH
Confidence 34566788999998765 66777777774 455 99998888776665432 1 1111111110 00 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+++..- .....+..+.+.|+++|.++...
T Consensus 223 ~~~~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 223 TEGRGADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred hCCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 1223589998531 12346678888999999987654
No 376
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.40 E-value=2.1 Score=35.29 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=49.0
Q ss_pred EEEecCCCChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEeccc
Q 025144 73 VLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGYG 150 (257)
Q Consensus 73 vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~ 150 (257)
|+|+-||.|.++.-+.+. +.+ +.++|+++...+.-+.+. +. .++..|+.++.. .-..+|+++....
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~--------~~-~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANF--------GN-KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhC--------CC-CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999888654 355 567999998888777765 23 445677776542 1235899987655
Q ss_pred ccCc
Q 025144 151 LRNV 154 (257)
Q Consensus 151 l~~~ 154 (257)
...+
T Consensus 69 Cq~f 72 (315)
T TIGR00675 69 CQPF 72 (315)
T ss_pred Cccc
Confidence 5444
No 377
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=86.32 E-value=14 Score=30.10 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=58.7
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcc
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 142 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 142 (257)
..+..++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++ + +. . ... +.... ...+.+
T Consensus 150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~-~---g~----~-~~~--~~~~~-~~~~~~ 215 (319)
T cd08242 150 QVPITPGDKVAVLGDGKLGLLIAQVLALT--GPDVVLVGRHSEKLALARR-L---GV----E-TVL--PDEAE-SEGGGF 215 (319)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH-c---CC----c-EEe--Ccccc-ccCCCC
Confidence 34567788999887653 55556666664 5679999988888877765 2 11 0 111 11111 233569
Q ss_pred cEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 143 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 143 D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
|+++-... ....+....+.|+++|.++..
T Consensus 216 d~vid~~g------~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 216 DVVVEATG------SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CEEEECCC------ChHHHHHHHHHhhcCCEEEEE
Confidence 99985321 134567778889999998763
No 378
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.19 E-value=4.5 Score=32.18 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=61.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
+.++..-.|+|+-+|.++-.|.++ +..|+++|..+ |.+..... +.++-...|...+.......|-.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~-ma~sL~dt---------g~v~h~r~DGfk~~P~r~~idWmV 275 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP-MAQSLMDT---------GQVTHLREDGFKFRPTRSNIDWMV 275 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccch-hhhhhhcc---------cceeeeeccCcccccCCCCCceEE
Confidence 467889999999999999999877 57899999643 43333222 578888888887754346688888
Q ss_pred ecccccCcccHHHHHHHHHhcccC
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKP 170 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~ 170 (257)
|..+ +.+.++-..+...|..
T Consensus 276 CDmV----EkP~rv~~li~~Wl~n 295 (358)
T COG2933 276 CDMV----EKPARVAALIAKWLVN 295 (358)
T ss_pred eehh----cCcHHHHHHHHHHHHc
Confidence 7554 3455555555555553
No 379
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=86.10 E-value=1.5 Score=30.75 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHcCceeeEEeeecCceeEEE
Q 025144 222 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNL 253 (257)
Q Consensus 222 ~~~~~~~~~~l~~~Gf~~~~~~~~~~g~~~~~ 253 (257)
-++.++++++++++||+++..+....+.+.++
T Consensus 95 Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l~ 126 (127)
T PF10017_consen 95 KYSPEEFEALAEQAGLEVEKRWTDPKGDFSLY 126 (127)
T ss_pred CcCHHHHHHHHHHCCCeeEEEEECCCCCeEEE
Confidence 35889999999999999999998888777665
No 380
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=85.83 E-value=0.64 Score=39.29 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=50.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCC
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 134 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 134 (257)
..++..|-|+-||.|-++..++.. +..|++.|.++++++..+.+++...... .++.++..|+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~-~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDP-SAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccch-hheeeecccHHH
Confidence 467889999999999999999876 5899999999999999998875432220 247777777654
No 381
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.78 E-value=12 Score=29.61 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 137 (257)
++.++|-.|+ +|..+..+++.+ ..+.+|++++.+++.++...+.+...+ .++.++..|+.+.. +
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG----PEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CceEEEECCCCCHHHHHHHHHHHHH
Confidence 4567887775 555555554433 246789999988776655444433221 35677888887632 0
Q ss_pred CCCcccEEEecc
Q 025144 138 SDCFFDAITMGY 149 (257)
Q Consensus 138 ~~~~~D~v~~~~ 149 (257)
..+..|+++.+.
T Consensus 83 ~~~~iD~vi~~a 94 (264)
T PRK07576 83 EFGPIDVLVSGA 94 (264)
T ss_pred HcCCCCEEEECC
Confidence 124589998654
No 382
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.47 E-value=13 Score=29.35 Aligned_cols=73 Identities=8% Similarity=0.036 Sum_probs=44.9
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----C
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 138 (257)
+.++|-.|+ +|.+...+++.+ ..+.+|+.+|.+++.++...+.. + .++.++.+|+.+.. + .
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G----ERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 457777775 455555555443 23678999998876554443332 1 46788899998742 0 0
Q ss_pred CCcccEEEeccc
Q 025144 139 DCFFDAITMGYG 150 (257)
Q Consensus 139 ~~~~D~v~~~~~ 150 (257)
.+..|+++.+..
T Consensus 78 ~g~id~lv~~ag 89 (261)
T PRK08265 78 FGRVDILVNLAC 89 (261)
T ss_pred hCCCCEEEECCC
Confidence 146899887654
No 383
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.05 E-value=16 Score=32.76 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=54.2
Q ss_pred CeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEE
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 145 (257)
.+|+=+||| ..+..+++.+. .+.+++.+|.+++.++.+++ .....+.+|..+.. ..-+++|.+
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----------~g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----------RGIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----------CCCeEEEcCCCCHHHHHhcCccccCEE
Confidence 456666665 45555555442 35789999999988887764 36789999998742 223568876
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
++.-. .-.+....... .+...|+..++..
T Consensus 486 iv~~~--~~~~~~~iv~~-~~~~~~~~~iiar 514 (558)
T PRK10669 486 LLTIP--NGYEAGEIVAS-AREKRPDIEIIAR 514 (558)
T ss_pred EEEcC--ChHHHHHHHHH-HHHHCCCCeEEEE
Confidence 64221 10111122333 3444666666544
No 384
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.85 E-value=12 Score=30.81 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=59.8
Q ss_pred CCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCC----CCC
Q 025144 66 GAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLP----FSD 139 (257)
Q Consensus 66 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~----~~~ 139 (257)
+..|+.+|-=+|.| -|.++..+++.+ +.+|+++|-+..--+.+-+.+ +. ...+.-. |..... .-+
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~~~L---GA----d~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAIKSL---GA----DVFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHHHhc---Cc----ceeEEecCCHHHHHHHHHhhc
Confidence 44578777777654 799999999985 789999999876666555554 21 1111111 111110 113
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
.-.|.+... + ...+..+.+.||++|.++++....
T Consensus 249 g~~~~v~~~-a-------~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 249 GGIDTVSNL-A-------EHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred Ccceeeeec-c-------ccchHHHHHHhhcCCEEEEEeCcC
Confidence 334444422 1 234566778899999998876543
No 385
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=84.83 E-value=3.1 Score=29.49 Aligned_cols=79 Identities=13% Similarity=0.018 Sum_probs=44.5
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
.-.+.++|=+|+|. |......+...+ -.+++.+.-+.+-.+...+.+.. ..+.....+-.. -....+|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nRt~~ra~~l~~~~~~------~~~~~~~~~~~~--~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALG-AKEITIVNRTPERAEALAEEFGG------VNIEAIPLEDLE--EALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTT-SSEEEEEESSHHHHHHHHHHHTG------CSEEEEEGGGHC--HHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHcCc------cccceeeHHHHH--HHHhhCCeE
Confidence 34578999999863 444433333322 23699999887655554444411 345555544322 112469999
Q ss_pred EecccccCc
Q 025144 146 TMGYGLRNV 154 (257)
Q Consensus 146 ~~~~~l~~~ 154 (257)
+..-...+.
T Consensus 80 I~aT~~~~~ 88 (135)
T PF01488_consen 80 INATPSGMP 88 (135)
T ss_dssp EE-SSTTST
T ss_pred EEecCCCCc
Confidence 976655544
No 386
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.79 E-value=8.3 Score=34.99 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=55.6
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEE
Q 025144 71 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 145 (257)
.+|+=+|+| ..+..+++.+ ..+.+++.+|.+++.++.+++. ...++.+|..+.. ..-++.|++
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY----------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 356666554 4555555443 1357999999999988877642 5678999998753 223567887
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
++... ..++-.. +-...+.+.|+..++...
T Consensus 469 v~~~~--d~~~n~~-i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 469 VITCN--EPEDTMK-IVELCQQHFPHLHILARA 498 (601)
T ss_pred EEEeC--CHHHHHH-HHHHHHHHCCCCeEEEEe
Confidence 76332 1111122 223344466777776543
No 387
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=84.79 E-value=11 Score=27.16 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=32.5
Q ss_pred CCeEEEecCCCChhHHHHHH----HhCCCceEEEEeCChhHHHHHHhhhhhh
Q 025144 70 GDNVLDVCCGSGDLSFLLSE----QVGSQGKVIGLDFSKNQLSMASSRQDLV 117 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~----~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 117 (257)
..++||+-+|.|.-...+-+ .+..+.++..+.+.....+...+.++..
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC
Confidence 34899999999976554433 3345679999999999888888877643
No 388
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=84.69 E-value=16 Score=30.45 Aligned_cols=46 Identities=24% Similarity=0.446 Sum_probs=36.5
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHh
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 112 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 112 (257)
....++.+||-.|+|. |..+..+++.. +.+++++|.+++-++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence 4567788999999975 77778888875 5689999999988877754
No 389
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=18 Score=28.64 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=66.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHH------HHhhhhhhhhccCCCeeEEEccCCCCC--
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSM------ASSRQDLVSKACYKNIEWVEGDALDLP-- 136 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~------a~~~~~~~~~~~~~~~~~~~~d~~~~~-- 136 (257)
+.....+||.+|=|.=.++..++...+ ....+++..++..--+. ++.++..... +...-+...|+..+.
T Consensus 53 ~~s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~--lG~~I~h~Vdv~sl~~~ 130 (282)
T KOG4174|consen 53 PYSKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKR--LGGTILHGVDVTSLKFH 130 (282)
T ss_pred eccccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHH--cCCceEecccceeEEec
Confidence 334567999999999889999998875 23356666554443222 2222222211 123445556666543
Q ss_pred --CCCCcccEEEecccccCc----c-c----------HHHHHHHHHhccc-CCCEEEEE
Q 025144 137 --FSDCFFDAITMGYGLRNV----V-D----------KRKALEESFRVLK-PGSRISVL 177 (257)
Q Consensus 137 --~~~~~~D~v~~~~~l~~~----~-~----------~~~~l~~~~~~Lk-~gG~l~~~ 177 (257)
+..+.||-|+.++.-.-. + + ...+|+.+...|+ ..|.+.+.
T Consensus 131 ~~~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~it 189 (282)
T KOG4174|consen 131 ADLRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHIT 189 (282)
T ss_pred ccccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 345789999987543322 0 1 2345788888998 78888665
No 390
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.44 E-value=3.7 Score=33.29 Aligned_cols=97 Identities=18% Similarity=0.068 Sum_probs=52.9
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh----c-----------cCCCeeEEEccCCC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----A-----------CYKNIEWVEGDALD 134 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~-----------~~~~~~~~~~d~~~ 134 (257)
.+|.=||+|. |......+.. .+.+|+++|.+++.++.++++...... . ...++. ...|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHH
Confidence 3688888885 3333222222 367999999999988888765422110 0 001222 1223222
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEE
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
. -...|+|+..-. ...+-...+++++.+.++++..+
T Consensus 81 a---~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 81 A---VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred H---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEE
Confidence 1 134688886432 22222456677888877766544
No 391
>PRK07109 short chain dehydrogenase; Provisional
Probab=84.38 E-value=19 Score=29.90 Aligned_cols=77 Identities=13% Similarity=-0.013 Sum_probs=48.8
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-C---------C
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-F---------S 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-~---------~ 138 (257)
+.+||=.|+ +|.+...+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++..|+.+.. . .
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456777775 455555554443 236789999988877766655554322 46788899987742 0 1
Q ss_pred CCcccEEEecccc
Q 025144 139 DCFFDAITMGYGL 151 (257)
Q Consensus 139 ~~~~D~v~~~~~l 151 (257)
-+..|+++.+...
T Consensus 83 ~g~iD~lInnAg~ 95 (334)
T PRK07109 83 LGPIDTWVNNAMV 95 (334)
T ss_pred CCCCCEEEECCCc
Confidence 2468999876554
No 392
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=84.13 E-value=0.98 Score=34.65 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=67.3
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL- 135 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 135 (257)
+-...+..+...++.+.+|+--|.|..+..+++. .+..+++++|.+|-+.+.|+....+.-. +.+.-..+.+..+
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk-~se~k~yalDrDP~A~~La~~~s~el~~---~~l~a~Lg~Fs~~~ 106 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQK-HSELKNYALDRDPVARKLAHFHSDELMH---PTLKAVLGNFSYIK 106 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHh-CcHhhhhhhccChHHHHHHHHhhHhhcc---hhHHHHHhhhHHHH
Confidence 3344566667778899999999999999999988 5788999999999887777654422110 1222222333222
Q ss_pred ------CCCCCcccEEEecccccCc--ccHHHHH
Q 025144 136 ------PFSDCFFDAITMGYGLRNV--VDKRKAL 161 (257)
Q Consensus 136 ------~~~~~~~D~v~~~~~l~~~--~~~~~~l 161 (257)
...++++|-|++......+ +++++-+
T Consensus 107 ~l~~~~gl~~~~vDGiLmDlGcSSMQ~d~peRGF 140 (303)
T KOG2782|consen 107 SLIADTGLLDVGVDGILMDLGCSSMQVDNPERGF 140 (303)
T ss_pred HHHHHhCCCcCCcceEEeecCccccccCCccccc
Confidence 2456889999987666554 3455444
No 393
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=84.10 E-value=3.5 Score=32.92 Aligned_cols=93 Identities=22% Similarity=0.253 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCcccHHHHHHH
Q 025144 84 SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 163 (257)
Q Consensus 84 ~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~ 163 (257)
+..|.+. ++..+|+++|.++..++.+.+.- -+.-...+.+.. ..+|+|+..-.+. ....++++
T Consensus 2 A~aL~~~-g~~~~v~g~d~~~~~~~~a~~~g---------~~~~~~~~~~~~----~~~DlvvlavP~~---~~~~~l~~ 64 (258)
T PF02153_consen 2 ALALRKA-GPDVEVYGYDRDPETLEAALELG---------IIDEASTDIEAV----EDADLVVLAVPVS---AIEDVLEE 64 (258)
T ss_dssp HHHHHHT-TTTSEEEEE-SSHHHHHHHHHTT---------SSSEEESHHHHG----GCCSEEEE-S-HH---HHHHHHHH
T ss_pred hHHHHhC-CCCeEEEEEeCCHHHHHHHHHCC---------CeeeccCCHhHh----cCCCEEEEcCCHH---HHHHHHHH
Confidence 3455555 56789999999999988886541 112222221111 2369999765433 45778888
Q ss_pred HHhcccCCCEEEEEeecCCCchhHHHHHHHHH
Q 025144 164 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMI 195 (257)
Q Consensus 164 ~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~ 195 (257)
+...+++|+.+ +|...........+.....
T Consensus 65 ~~~~~~~~~iv--~Dv~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 65 IAPYLKPGAIV--TDVGSVKAPIVEAMERLLP 94 (258)
T ss_dssp HHCGS-TTSEE--EE--S-CHHHHHHHHHHHT
T ss_pred hhhhcCCCcEE--EEeCCCCHHHHHHHHHhcC
Confidence 88888887654 4444444444444444333
No 394
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.96 E-value=9 Score=29.65 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=49.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----------CC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----------PF 137 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----------~~ 137 (257)
...||-.||..|.....+++.+. .+..|++.--+-+-+...... .++.....|+.+. .+
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~---------~gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ---------FGLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh---------hCCeeEEeccCChHHHHHHHHHHhhC
Confidence 45899999999999988887763 356787776555444444322 3567777777653 24
Q ss_pred CCCcccEEEeccc
Q 025144 138 SDCFFDAITMGYG 150 (257)
Q Consensus 138 ~~~~~D~v~~~~~ 150 (257)
++++.|+.+.+..
T Consensus 78 ~~Gkld~L~NNAG 90 (289)
T KOG1209|consen 78 PDGKLDLLYNNAG 90 (289)
T ss_pred CCCceEEEEcCCC
Confidence 6789999986543
No 395
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=83.95 E-value=2.4 Score=30.85 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=30.5
Q ss_pred HHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcCc
Q 025144 158 RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGF 237 (257)
Q Consensus 158 ~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 237 (257)
..+++-+++.|.|||.+++. ...+. ........ +. ......+-..|.++||
T Consensus 66 ~~l~~~~~~~l~pg~~lfVe-Y~~D~----eT~~~L~~----------------------G~--pp~~TrLG~~Ll~~GF 116 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVE-YVEDR----ETRRQLQR----------------------GV--PPAETRLGFSLLKAGF 116 (170)
T ss_dssp HHHHHHHHTT----SEEEEE--TT-H----HHHHHHHT----------------------T----GGGSHHHHHHHTTT-
T ss_pred HHHHHHHHHHhhhcCeEEEE-EecCH----HHHHHHHc----------------------CC--CcccchhHHHHHhCCc
Confidence 56788899999999999654 22211 11111111 00 0122355678899999
Q ss_pred eeeEEeeecCc
Q 025144 238 SRAKHYELSGG 248 (257)
Q Consensus 238 ~~~~~~~~~~g 248 (257)
+..+-+.++.|
T Consensus 117 twfKdWYfPEG 127 (170)
T PF06557_consen 117 TWFKDWYFPEG 127 (170)
T ss_dssp -EEEEEE--TT
T ss_pred EEEeeeeccCc
Confidence 99998888655
No 396
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.94 E-value=26 Score=29.91 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=61.1
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc----cCCC-C-C
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DALD-L-P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~-~-~ 136 (257)
....++.+||=.|+|. |..+..+++.. +.+ +..+|.+++-++.+++. + ...+.. +..+ + .
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~--Ga~~vi~~d~~~~r~~~a~~~----G------a~~v~~~~~~~~~~~v~~ 248 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLL--GAAVVIVGDLNPARLAQARSF----G------CETVDLSKDATLPEQIEQ 248 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHc----C------CeEEecCCcccHHHHHHH
Confidence 4566778888888864 66777777775 343 66678887777776653 1 111111 1100 0 0
Q ss_pred -CCCCcccEEEecccccC--------cccHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 -FSDCFFDAITMGYGLRN--------VVDKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~--------~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
.....+|+++-.-.-.. ..+....+....+.+++||.+++.-..
T Consensus 249 ~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 249 ILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred HcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 12245898884322110 012235788889999999999886653
No 397
>PRK07806 short chain dehydrogenase; Provisional
Probab=83.93 E-value=18 Score=28.13 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=57.7
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCCh-hHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC----
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSK-NQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS---- 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---- 138 (257)
+.++|-.|+ +|.++..+++.+ ..+.+|++++.+. ...+.....++..+ .++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG----GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 467888875 455555555543 2466888887654 23333333332211 46778889988742 00
Q ss_pred -CCcccEEEecccccCc-------------ccHHHHHHHHHhcccCCCEEEEE
Q 025144 139 -DCFFDAITMGYGLRNV-------------VDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 139 -~~~~D~v~~~~~l~~~-------------~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.+..|+++.+...... .....+++.+.+.++.+|.++++
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 1357888765432211 01345677777776666776654
No 398
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=83.43 E-value=20 Score=30.11 Aligned_cols=98 Identities=14% Similarity=0.228 Sum_probs=59.8
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCC--CC-----
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL--DL----- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~----- 135 (257)
....++.+||=.|+|. |..+..+++.. +. .++++|.+++-++.+++. + --.++...-. +.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~l----G-----a~~~i~~~~~~~~~~~~v~ 250 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELAKKF----G-----ATDCVNPKDHDKPIQQVLV 250 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc----C-----CCEEEcccccchHHHHHHH
Confidence 4567788999998763 66677777774 55 699999999887777542 1 1111211100 00
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
...++.+|+|+-.-. -...+....+.++++ |.++....
T Consensus 251 ~~~~~g~d~vid~~g------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 251 EMTDGGVDYTFECIG------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred HHhCCCCcEEEECCC------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 011236898874221 134566777888887 98877654
No 399
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.42 E-value=3.9 Score=35.44 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=47.5
Q ss_pred CCeEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccE
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 144 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 144 (257)
..+|+=+|+ |..+..+++.+. .+.+++++|.+++.++..++.. .++.++.+|..+.. ..-+.+|.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~--------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL--------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC--------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 467888877 556555555542 2568999999999887776653 46778899987642 22356888
Q ss_pred EEec
Q 025144 145 ITMG 148 (257)
Q Consensus 145 v~~~ 148 (257)
|++.
T Consensus 301 vi~~ 304 (453)
T PRK09496 301 FIAL 304 (453)
T ss_pred EEEC
Confidence 8763
No 400
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=83.38 E-value=12 Score=31.52 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=60.0
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC--CCC----
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDL---- 135 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~---- 135 (257)
..+..++.+||=.|+|. |..+..+++.. +. +++++|.+++.++.+++. + -..++..+- .++
T Consensus 182 ~~~~~~g~~VlV~G~g~vG~~a~q~ak~~--G~~~vi~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~~~v 250 (369)
T cd08301 182 VAKVKKGSTVAIFGLGAVGLAVAEGARIR--GASRIIGVDLNPSKFEQAKKF----G-----VTEFVNPKDHDKPVQEVI 250 (369)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CceEEcccccchhHHHHH
Confidence 34567888999998763 56667777774 45 799999998887777542 1 111221111 000
Q ss_pred -CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEeec
Q 025144 136 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 180 (257)
Q Consensus 136 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~~ 180 (257)
....+.+|+++-.-. ....+....+.++++ |.+++....
T Consensus 251 ~~~~~~~~d~vid~~G------~~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 251 AEMTGGGVDYSFECTG------NIDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred HHHhCCCCCEEEECCC------ChHHHHHHHHHhhcCCCEEEEECcC
Confidence 011235888874221 134566677888996 988776543
No 401
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=83.25 E-value=25 Score=29.27 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=55.6
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC--------C-
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--------P- 136 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--------~- 136 (257)
.++.+||=.|+|. |..+..+++.. +. ++++++.+++-.+.+++. + --.++..+.... .
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~~~~i~~~ 244 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAREF----G-----ADATIDIDELPDPQRRAIVRDI 244 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CCeEEcCcccccHHHHHHHHHH
Confidence 4677888888753 56667777774 55 899999887766655422 1 011111111100 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+|+-... ....+....+.++++|.++...
T Consensus 245 ~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 245 TGGRGADVVIEASG------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred hCCCCCcEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence 12346899884321 1245667788999999997654
No 402
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.87 E-value=12 Score=30.24 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=52.0
Q ss_pred eEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhcc--------------CCCeeEEEccCCCC
Q 025144 72 NVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------YKNIEWVEGDALDL 135 (257)
Q Consensus 72 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~d~~~~ 135 (257)
+|.=||+|. |. .+..+++ .+.+|+++|.+++.++.+.++........ ..++. ...+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV---SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKAA 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHHh
Confidence 577788874 33 2333332 36789999999999988776532210000 01122 12222221
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
-...|+|+..-. ....-...++.++.+.++++..+.+
T Consensus 79 ---~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 79 ---VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred ---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 134788885432 2222234567778888888765533
No 403
>PRK12939 short chain dehydrogenase; Provisional
Probab=82.84 E-value=13 Score=28.92 Aligned_cols=77 Identities=14% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC-----
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS----- 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----- 138 (257)
+.++|=.| |+|..+..+++.+ ..+.++.+++.+++.++...+.+...+ .++.++..|+.+.. +.
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG----GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56778666 4566666665544 235689999888776665554443221 46888999998642 10
Q ss_pred CCcccEEEecccc
Q 025144 139 DCFFDAITMGYGL 151 (257)
Q Consensus 139 ~~~~D~v~~~~~l 151 (257)
.+..|+++.+...
T Consensus 82 ~~~id~vi~~ag~ 94 (250)
T PRK12939 82 LGGLDGLVNNAGI 94 (250)
T ss_pred cCCCCEEEECCCC
Confidence 1468998865543
No 404
>PRK10458 DNA cytosine methylase; Provisional
Probab=82.63 E-value=15 Score=32.15 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=50.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC-----------
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS----------- 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------- 138 (257)
.-+++|+-||.|.+..-+-.. + ...+.++|+++.+.+.-+.+.... +....+..|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~~-----p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYCD-----PATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCCC-----CccceeccChhhCccccccccchhhhh
Confidence 449999999999999888654 2 346788999988777666654211 2334445566554310
Q ss_pred ------CCcccEEEecccccCc
Q 025144 139 ------DCFFDAITMGYGLRNV 154 (257)
Q Consensus 139 ------~~~~D~v~~~~~l~~~ 154 (257)
....|+++.......+
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPF 182 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCcc
Confidence 1257998876655544
No 405
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=82.46 E-value=3.8 Score=29.43 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=50.4
Q ss_pred EEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCCCCCCcccEEEeccc
Q 025144 73 VLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFDAITMGYG 150 (257)
Q Consensus 73 vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~v~~~~~ 150 (257)
|+=+|+|. |.+....+.. .+.+|+.++-++ .++..++.--...... .+..+... .........+.+|+|+..--
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcchhccCCCcEEEEEec
Confidence 34566663 4444444433 467999999877 5554333210000000 01111111 11111113467999987432
Q ss_pred ccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 151 LRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 151 l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
..+....+..+.+.+.++..+++.
T Consensus 77 ---a~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 77 ---AYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp ---GGGHHHHHHHHCTGEETTEEEEEE
T ss_pred ---ccchHHHHHHHhhccCCCcEEEEE
Confidence 224677889999999999777554
No 406
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=82.36 E-value=5.4 Score=33.08 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=54.1
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCCcccEEEe
Q 025144 71 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAITM 147 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~ 147 (257)
.+++|+-||.|.+..-+... + ..-+.++|+++..++.-+.+. +...+...|+.... ++...+|+++.
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEEe
Confidence 47999999999999777655 2 346888999999888877775 33566667776543 11116899998
Q ss_pred cccccCc
Q 025144 148 GYGLRNV 154 (257)
Q Consensus 148 ~~~l~~~ 154 (257)
....+.+
T Consensus 74 GpPCQ~F 80 (328)
T COG0270 74 GPPCQDF 80 (328)
T ss_pred CCCCcch
Confidence 7776665
No 407
>PRK08324 short chain dehydrogenase; Validated
Probab=82.33 E-value=18 Score=33.39 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=61.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----- 137 (257)
++++||-.|+ +|.++..+++.+ ..+.+|+++|.+++.++.+.+.+... .++.++..|+.+.. +
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3567887775 444544444433 23578999999987766655443211 36788888887642 1
Q ss_pred CCCcccEEEecccccCccc-------------------HHHHHHHHHhcccC---CCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVD-------------------KRKALEESFRVLKP---GSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lk~---gG~l~~~~ 178 (257)
..+..|+|+.+........ ...+++.+.+.+++ +|.+++..
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1246899987665322110 23445666666665 57776654
No 408
>PRK08267 short chain dehydrogenase; Provisional
Probab=82.09 E-value=17 Score=28.69 Aligned_cols=73 Identities=11% Similarity=0.045 Sum_probs=46.4
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC------C
Q 025144 72 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS------D 139 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~------~ 139 (257)
++|-.|++ |.++..+++.+ ..+.+|..++.+++.++....... + .++.++++|+.+.. +. .
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A----GNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56777754 55555554433 236789999988876666544432 1 46888999998742 00 3
Q ss_pred CcccEEEecccc
Q 025144 140 CFFDAITMGYGL 151 (257)
Q Consensus 140 ~~~D~v~~~~~l 151 (257)
++.|+++.+...
T Consensus 76 ~~id~vi~~ag~ 87 (260)
T PRK08267 76 GRLDVLFNNAGI 87 (260)
T ss_pred CCCCEEEECCCC
Confidence 568999876654
No 409
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=81.81 E-value=25 Score=30.06 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=26.2
Q ss_pred eEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh
Q 025144 72 NVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 72 ~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
+|-=+|.| .|..+..+.. .+.+|+++|.+++.++.+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred EEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcC
Confidence 35556666 3444443333 257999999999999888764
No 410
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=81.69 E-value=8.7 Score=30.99 Aligned_cols=82 Identities=17% Similarity=0.075 Sum_probs=46.1
Q ss_pred eEEEecCCC-C-hhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 72 NVLDVCCGS-G-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 72 ~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+|.=||+|. | .++..|.+. +.+|+++|.+++.++.+.+.- .+.....+... -...|+|+..-
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~~g---------~~~~~~~~~~~----~~~aDlVilav 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIERG---------LVDEASTDLSL----LKDCDLVILAL 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHCC---------CcccccCCHhH----hcCCCEEEEcC
Confidence 466677764 3 344444433 568999999998877765431 11111111111 13579998755
Q ss_pred cccCcccHHHHHHHHHhcccCCC
Q 025144 150 GLRNVVDKRKALEESFRVLKPGS 172 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG 172 (257)
... .....++++...++++.
T Consensus 66 p~~---~~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 66 PIG---LLLPPSEQLIPALPPEA 85 (279)
T ss_pred CHH---HHHHHHHHHHHhCCCCc
Confidence 432 23456777777777663
No 411
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.48 E-value=3.8 Score=34.39 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=56.6
Q ss_pred HhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC
Q 025144 62 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 135 (257)
Q Consensus 62 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (257)
...+...++.+|+|..|-.|.-+.+++..+.+..++.++|.++.-.+..++.+...+. ..+....+|+...
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~---~~~~~~~~df~~t 276 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV---SIVESVEGDFLNT 276 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC---CccccccccccCC
Confidence 3455667789999999999999999998877788999999999888888877765443 3566668888764
No 412
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=81.16 E-value=29 Score=28.45 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=53.5
Q ss_pred eEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhh--hhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 72 NVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 72 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
+|+=+|+|. |. ++..|. + .+.+|+.++-+++.++..++. +.-... ............ +.+.+.+|+|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~-~--~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~---g~~~~~~~~~~~-~~~~~~~D~viv 76 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLA-R--AGLPVRLILRDRQRLAAYQQAGGLTLVEQ---GQASLYAIPAET-ADAAEPIHRLLL 76 (305)
T ss_pred eEEEECCCHHHHHHHHHHH-h--CCCCeEEEEechHHHHHHhhcCCeEEeeC---CcceeeccCCCC-cccccccCEEEE
Confidence 688899885 54 444444 3 256899999887666655432 110000 111111111111 112357999886
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.-=- .+....++.+...+.++..++..
T Consensus 77 ~vK~---~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 77 ACKA---YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred ECCH---HhHHHHHHHHHhhCCCCCEEEEE
Confidence 4322 24567788899999998876554
No 413
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=81.07 E-value=17 Score=31.26 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=54.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..+.+|+=+|+|. |......++.+ +.+|+++|.++.....+... ...+. +..+. . ...|+|+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~----------G~~v~--~leea-l--~~aDVVI 255 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD----------GFRVM--TMEEA-A--KIGDIFI 255 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc----------CCEeC--CHHHH-H--hcCCEEE
Confidence 4678999999996 66666666654 67899999888543333221 11221 11121 1 2468887
Q ss_pred ecccccCcccHHHHHH-HHHhcccCCCEEEEEeec
Q 025144 147 MGYGLRNVVDKRKALE-ESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~-~~~~~Lk~gG~l~~~~~~ 180 (257)
..- .....+. .....+|+|++++.....
T Consensus 256 taT------G~~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 256 TAT------GNKDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ECC------CCHHHHHHHHHhcCCCCcEEEEECCC
Confidence 632 1234444 477788999988766543
No 414
>PRK06181 short chain dehydrogenase; Provisional
Probab=81.06 E-value=17 Score=28.66 Aligned_cols=76 Identities=12% Similarity=0.033 Sum_probs=46.2
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----CC
Q 025144 71 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----SD 139 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~ 139 (257)
.+||-.| |+|..+..+++.+ ..+.+|++++.++...+...+.+...+ .++.++..|+.+.. + .-
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG----GEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567666 4555666555433 235799999988766555544443322 46788889987742 0 01
Q ss_pred CcccEEEecccc
Q 025144 140 CFFDAITMGYGL 151 (257)
Q Consensus 140 ~~~D~v~~~~~l 151 (257)
+..|.|+.+...
T Consensus 77 ~~id~vi~~ag~ 88 (263)
T PRK06181 77 GGIDILVNNAGI 88 (263)
T ss_pred CCCCEEEECCCc
Confidence 358999876543
No 415
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=80.65 E-value=31 Score=28.58 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=59.5
Q ss_pred hhCCCCCCeEEEecCC-CChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----C
Q 025144 64 WSGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 136 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~ 136 (257)
.....++.+||=.|+| .|..+..+++.. +. .+++++.+++..+.+++. +. . .++...-.++ .
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~~----ga----~-~~i~~~~~~~~~~l~~ 235 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEEL----GA----T-IVLDPTEVDVVAEVRK 235 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----CC----C-EEECCCccCHHHHHHH
Confidence 3456678888888865 356666777764 55 789999888877766442 10 1 1111110110 0
Q ss_pred -CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
...+.+|+|+-... ....+..+.+.|+++|.++....
T Consensus 236 ~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 236 LTGGGGVDVSFDCAG------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred HhCCCCCCEEEECCC------CHHHHHHHHHhccCCCEEEEEcc
Confidence 12234899985322 13457788889999999877654
No 416
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.57 E-value=18 Score=29.30 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=52.6
Q ss_pred CeEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh----hcc----------CCCeeEEEccCCC
Q 025144 71 DNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KAC----------YKNIEWVEGDALD 134 (257)
Q Consensus 71 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~----------~~~~~~~~~d~~~ 134 (257)
.+|.=||+|. |. ++..++. .+.+|+..|.+++.++.+.+++.... ... ..++.. ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL---AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH
Confidence 4788888885 33 3333332 36799999999998887654332110 000 011222 223222
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
-...|+|+..- .....-...+++.+...++++..++
T Consensus 81 ----~~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 ----LADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred ----hcCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 13478887632 1111123466788888888887654
No 417
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=80.35 E-value=34 Score=29.28 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=60.3
Q ss_pred hCCCCCCeEEEec-CC-CChhHHHHHHHhCCC-ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCC-----
Q 025144 65 SGAKTGDNVLDVC-CG-SGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDL----- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~----- 135 (257)
....++.+||=+| +| .|..+..+++..+.+ .+++++|.+++-++.+++..........-...++...- .++
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHH
Confidence 3556778999887 34 577888888774322 27999999999888887642110000000111221110 111
Q ss_pred C-CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 136 P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 136 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
. .....+|+|+..-. ....+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 0 12235898875321 135667788889988876543
No 418
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.34 E-value=31 Score=28.24 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=58.1
Q ss_pred hhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCc
Q 025144 63 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 141 (257)
Q Consensus 63 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (257)
...+..++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++ + + --.++..+ .. +.+.
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~--g~~v~~~~~~~~~~~~~~~-~---g-----~~~~~~~~--~~--~~~~ 225 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ--GAEVFAFTRSGEHQELARE-L---G-----ADWAGDSD--DL--PPEP 225 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEcCChHHHHHHHH-h---C-----CcEEeccC--cc--CCCc
Confidence 345567778888887763 45556666663 5789999888876666532 2 1 00111111 11 2345
Q ss_pred ccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 142 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 142 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+|+++.... ....+..+.+.|+++|.++...
T Consensus 226 vD~vi~~~~------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 226 LDAAIIFAP------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ccEEEEcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence 888774321 1246788899999999998654
No 419
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=80.18 E-value=23 Score=29.67 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=54.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE-ccCCCCCCCCCcccEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v 145 (257)
.++.+||-.|+|. |..+..+++.. +.++++++.+++..+.+.+.+ +. . .++. .+...+......+|++
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~~~---Ga----~-~~i~~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALEHL---GA----D-DYLVSSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhc---CC----c-EEecCCChHHHHHhcCCCcEE
Confidence 5677888887753 66777777774 567888887776555444332 11 1 1111 1100110001247888
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+-.-. ....+....+.++++|.++....
T Consensus 249 id~~g------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 249 IDTVP------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred EECCC------chHHHHHHHHHhccCCEEEEECC
Confidence 74221 12456777888999999877654
No 420
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=80.07 E-value=22 Score=32.43 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=45.4
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEE
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 145 (257)
.+|+=+|+|. |......++. .+.+++.+|.+++.++.+++ ....++.+|..+.. ..-++.|++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~----------~g~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRK----------FGMKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred CcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh----------cCCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 5788888774 4444333333 35689999999998888764 25678999998753 223468888
Q ss_pred Eec
Q 025144 146 TMG 148 (257)
Q Consensus 146 ~~~ 148 (257)
++.
T Consensus 469 vv~ 471 (621)
T PRK03562 469 INA 471 (621)
T ss_pred EEE
Confidence 763
No 421
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=79.85 E-value=34 Score=28.67 Aligned_cols=98 Identities=14% Similarity=0.231 Sum_probs=58.6
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-----CC-C-
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-----LD-L- 135 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-----~~-~- 135 (257)
....++.+||=+|+|. |..+..+++.. +. +|+++|.+++-.+.+++. +. . .++...- .+ +
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~~~~~----ga---~--~~i~~~~~~~~~~~~~~ 248 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIA--GASRIIGVDINEDKFEKAKEF----GA---T--DFINPKDSDKPVSEVIR 248 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc----CC---C--cEeccccccchHHHHHH
Confidence 4567788999998763 56667777774 45 799999988877777542 10 0 1111100 00 0
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCC-CEEEEEee
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 179 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 179 (257)
....+.+|+|+-.-. ....+....+.++++ |.++....
T Consensus 249 ~~~~~g~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 249 EMTGGGVDYSFECTG------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred HHhCCCCCEEEECCC------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 011245898874221 134566777888885 98877654
No 422
>PRK06701 short chain dehydrogenase; Provisional
Probab=79.65 E-value=29 Score=28.06 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=57.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChh-HHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CC---
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKN-QLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS--- 138 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--- 138 (257)
.+.++|-.|+ +|.++..+++.+ ..+.+|+.++.+.. ..+.....++..+ .++.++..|+.+.. +.
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG----VKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHHHHHHHH
Confidence 3567888875 444555554443 23678888887642 2333333332211 46778899987642 10
Q ss_pred --CCcccEEEecccccC----cc----------------cHHHHHHHHHhcccCCCEEEEEe
Q 025144 139 --DCFFDAITMGYGLRN----VV----------------DKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 --~~~~D~v~~~~~l~~----~~----------------~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+..|+++.+..... +. .+..+++.+.+.++++|.++++.
T Consensus 120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 145798886544321 11 12334556666667777776644
No 423
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=79.44 E-value=36 Score=28.53 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=59.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----CC
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PF 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~~ 137 (257)
....++.+||-.|+|. |..+..+++.. +. .++++|.++...+.+++.- --.++..+-.+. ..
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~--G~~~v~~~~~~~~k~~~~~~~g---------~~~~i~~~~~~~~~~v~~~ 250 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIA--GCTTIIAVDIVDSRLELAKELG---------ATHVINPKEEDLVAAIREI 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcC---------CcEEecCCCcCHHHHHHHH
Confidence 3556788899888764 66777777775 44 6999999887776665421 111221111111 01
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....+|+|+-.-. ....+..+.+.++++|.++...
T Consensus 251 ~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 251 TGGGVDYALDTTG------VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred hCCCCcEEEECCC------CcHHHHHHHHHhccCCEEEEeC
Confidence 1345898874321 1245677888899999987654
No 424
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.22 E-value=14 Score=29.94 Aligned_cols=96 Identities=19% Similarity=0.025 Sum_probs=52.2
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh--h-----hcc----------CCCeeEEEccC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV--S-----KAC----------YKNIEWVEGDA 132 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~-----~~~----------~~~~~~~~~d~ 132 (257)
.+|.=||+|. |......+.. .+.+|+++|.+++.++.+.+++... + ... ..++.. ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 4688889884 4433333333 3579999999999998766543220 0 000 011111 1122
Q ss_pred CCCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEE
Q 025144 133 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 133 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
.. -...|+|+..- ....+....+++++.+.++++..+
T Consensus 81 ~~----~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il 117 (291)
T PRK06035 81 ES----LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETII 117 (291)
T ss_pred HH----hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEE
Confidence 11 13468887642 222222466778888888877654
No 425
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=78.94 E-value=35 Score=28.08 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=59.3
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---CCCC
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDC 140 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 140 (257)
.+..++.+||=.|+|. |..+..+++.. +.++++++.+++-.+.+++. + --.++...-.+.. ....
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~----g-----~~~~i~~~~~~~~~~~~~~~ 227 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARKL----G-----AHHYIDTSKEDVAEALQELG 227 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHc----C-----CcEEecCCCccHHHHHHhcC
Confidence 3667788999998753 66667777774 56899999888777766432 1 1111211111110 0013
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+|+++.... ....+....+.|+++|.++....
T Consensus 228 ~~d~vi~~~g------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 228 GAKLILATAP------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CCCEEEECCC------chHHHHHHHHHcccCCEEEEEec
Confidence 4788874211 13467778889999999876543
No 426
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.68 E-value=17 Score=29.72 Aligned_cols=89 Identities=21% Similarity=0.196 Sum_probs=48.9
Q ss_pred CeEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEec
Q 025144 71 DNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 148 (257)
Q Consensus 71 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 148 (257)
.+|.=||+|. |. ++..+.+. +...+|+++|.+++.++.+++. + -......+..+. -...|+|+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~~----g-----~~~~~~~~~~~~---~~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARAREL----G-----LGDRVTTSAAEA---VKGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhC----C-----CCceecCCHHHH---hcCCCEEEEC
Confidence 5788898875 33 33333332 2224899999998877665432 1 111111121111 1347999875
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
-.... ...+++.+...++++..++
T Consensus 74 vp~~~---~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 74 VPVGA---SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CCHHH---HHHHHHHHHhhCCCCCEEE
Confidence 54322 3455677777788887553
No 427
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=78.66 E-value=12 Score=32.21 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=54.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+.+|+=+|+|. |......++.+ +.+|+++|.++.....+... ...+. ++.+. -...|+|+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~----------G~~v~--~l~ea---l~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD----------GFRVM--TMEEA---AELGDIFVT 273 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc----------CCEec--CHHHH---HhCCCEEEE
Confidence 678999999985 55555555553 66899999988654333221 11111 22221 135899976
Q ss_pred cccccCcccHHHHHH-HHHhcccCCCEEEEEeec
Q 025144 148 GYGLRNVVDKRKALE-ESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~-~~~~~Lk~gG~l~~~~~~ 180 (257)
.- .....+. ...+.+|+|+.++.....
T Consensus 274 aT------G~~~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 274 AT------GNKDVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred CC------CCHHHHHHHHHhcCCCCCEEEEcCCC
Confidence 42 1233454 577889999988765543
No 428
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=78.44 E-value=6.5 Score=28.81 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=44.5
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEeccc
Q 025144 72 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 150 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 150 (257)
+|-=||.| .....+++++ ..+.++++.|.+++..+...+. .. ....+..+. -...|+|++.-.
T Consensus 3 ~Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----------g~-~~~~s~~e~---~~~~dvvi~~v~ 66 (163)
T PF03446_consen 3 KIGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----------GA-EVADSPAEA---AEQADVVILCVP 66 (163)
T ss_dssp EEEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----------TE-EEESSHHHH---HHHBSEEEE-SS
T ss_pred EEEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----------hh-hhhhhhhhH---hhcccceEeecc
Confidence 45556654 4555554443 2367999999998776665543 11 122222222 133588876322
Q ss_pred ccCcccHHHHHHH--HHhcccCCCEEE
Q 025144 151 LRNVVDKRKALEE--SFRVLKPGSRIS 175 (257)
Q Consensus 151 l~~~~~~~~~l~~--~~~~Lk~gG~l~ 175 (257)
.-+....++.. +...|++|..++
T Consensus 67 --~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 67 --DDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp --SHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred --cchhhhhhhhhhHHhhccccceEEE
Confidence 22234555666 677777666554
No 429
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=78.24 E-value=9.7 Score=30.99 Aligned_cols=77 Identities=21% Similarity=0.189 Sum_probs=45.5
Q ss_pred cCCCChhHHHHHHHhCC--CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeE----EEccCCCCC-----CCCCcccEE
Q 025144 77 CCGSGDLSFLLSEQVGS--QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW----VEGDALDLP-----FSDCFFDAI 145 (257)
Q Consensus 77 G~G~G~~~~~l~~~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~----~~~d~~~~~-----~~~~~~D~v 145 (257)
-+|+|.++..|++++-. ..+++.+|.++..+-..++.+...... +++.+ +.+|+.+.. +....+|+|
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~--~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiV 81 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPD--PKVRFEIVPVIGDVRDKERLNRIFEEYKPDIV 81 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC----TTCEEEEE--CTSCCHHHHHHHHTT--T-SEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccc--cCcccccCceeecccCHHHHHHHHhhcCCCEE
Confidence 35788999988887521 148999999999988888877432211 34443 578887642 455679999
Q ss_pred EecccccCcc
Q 025144 146 TMGYGLRNVV 155 (257)
Q Consensus 146 ~~~~~l~~~~ 155 (257)
+-...+.|.+
T Consensus 82 fHaAA~KhVp 91 (293)
T PF02719_consen 82 FHAAALKHVP 91 (293)
T ss_dssp EE------HH
T ss_pred EEChhcCCCC
Confidence 9888888874
No 430
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.04 E-value=19 Score=29.22 Aligned_cols=96 Identities=21% Similarity=0.071 Sum_probs=51.9
Q ss_pred CeEEEecCCC-ChhH-HHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh----hhcc----------CCCeeEEEccCCC
Q 025144 71 DNVLDVCCGS-GDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV----SKAC----------YKNIEWVEGDALD 134 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~-~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~----~~~~----------~~~~~~~~~d~~~ 134 (257)
.+|.=||+|. |... ..++. .+.+|+++|.+++.++.+++++... .... ..++ ....+...
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~ 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA---AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRI-RCTTNLEE 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhce-EeeCCHHH
Confidence 4688888874 4333 33332 3679999999999888766543211 0000 0011 12222221
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
-...|+|+..- .........++.++...++++..++
T Consensus 81 ----~~~aD~Vieav-~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 ----LRDADFIIEAI-VESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred ----hCCCCEEEEcC-ccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 13468887632 2222234566777888888876553
No 431
>PRK09072 short chain dehydrogenase; Provisional
Probab=77.94 E-value=32 Score=27.11 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=46.9
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC---------CC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---------SD 139 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~ 139 (257)
+.++|=.|++ |.++..+++.+ ..+.+|++++.+++.++.....+. .+ .++.++..|+.+..- ..
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~----~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-YP----GRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-cC----CceEEEEccCCCHHHHHHHHHHHHhc
Confidence 4567777754 44444444332 236799999998876665544431 11 478888899877420 02
Q ss_pred CcccEEEecccc
Q 025144 140 CFFDAITMGYGL 151 (257)
Q Consensus 140 ~~~D~v~~~~~l 151 (257)
+..|.++.+...
T Consensus 79 ~~id~lv~~ag~ 90 (263)
T PRK09072 79 GGINVLINNAGV 90 (263)
T ss_pred CCCCEEEECCCC
Confidence 467999876554
No 432
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=77.84 E-value=34 Score=28.12 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=50.5
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc-cCCCCCCCCCcccEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFDAI 145 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~v 145 (257)
.++.+|+-+|+|. |......+... ...+++.+|.+++-.....+.+ +. ..... +..+. -..+|+|
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~~~ra~~la~~~--------g~-~~~~~~~~~~~---l~~aDvV 242 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRTYERAEELAKEL--------GG-NAVPLDELLEL---LNEADVV 242 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHc--------CC-eEEeHHHHHHH---HhcCCEE
Confidence 4678999999864 44433333331 2358999999876543333332 11 22221 11111 1347999
Q ss_pred EecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCc
Q 025144 146 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 184 (257)
Q Consensus 146 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 184 (257)
+..-.-.+. ...+..+.+.. +++..+++|...|..
T Consensus 243 i~at~~~~~---~~~~~~~~~~~-~~~~~~viDlavPrd 277 (311)
T cd05213 243 ISATGAPHY---AKIVERAMKKR-SGKPRLIVDLAVPRD 277 (311)
T ss_pred EECCCCCch---HHHHHHHHhhC-CCCCeEEEEeCCCCC
Confidence 976543332 23333333322 233344667665443
No 433
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=77.40 E-value=14 Score=31.28 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=54.5
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhH-HHHHHhhhhhhhhccCCCeeEEEc-cCCCCCCCCCcccE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQ-LSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFDA 144 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~ 144 (257)
.++.+||-.|+|. |..+..+++.. +.++++++.+++. .+.+++ + +. -.++.. +.....-..+.+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~a~~-l---Ga-----~~~i~~~~~~~v~~~~~~~D~ 245 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAIDR-L---GA-----DSFLVTTDSQKMKEAVGTMDF 245 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHHHHh-C---CC-----cEEEcCcCHHHHHHhhCCCcE
Confidence 4678899888864 67777788775 5678999877543 333322 1 11 111111 10000000124788
Q ss_pred EEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 145 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 145 v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
|+-.-. ....+....+.++++|.++....
T Consensus 246 vid~~G------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 246 IIDTVS------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEECCC------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 874321 23356777889999999987653
No 434
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.40 E-value=25 Score=31.42 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=61.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHh--CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----CCCCc
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV--GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FSDCF 141 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~ 141 (257)
.+++||-=| |+|.++..+++++ ..-.++..+|.++..+...+..+...-+ ...+.++-+|+.+.. +..-+
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~--~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP--ELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCC--CcceEEEecccccHHHHHHHHhcCC
Confidence 345666555 7788888887764 1234899999999888888877755322 257899999999853 44556
Q ss_pred ccEEEecccccCcc
Q 025144 142 FDAITMGYGLRNVV 155 (257)
Q Consensus 142 ~D~v~~~~~l~~~~ 155 (257)
.|+|+-...+.|.|
T Consensus 326 vd~VfHAAA~KHVP 339 (588)
T COG1086 326 VDIVFHAAALKHVP 339 (588)
T ss_pred CceEEEhhhhccCc
Confidence 99999888888885
No 435
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=77.02 E-value=15 Score=23.15 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCCCCeEEEecCCCCh-hHHHHHHHhCCCceEEEEeCC
Q 025144 67 AKTGDNVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFS 103 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~~D~s 103 (257)
...+++||-+||.+|. ++..++..++.++..+++-..
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 3455799999999996 444555555677787777653
No 436
>PLN02494 adenosylhomocysteinase
Probab=76.89 E-value=16 Score=32.01 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=53.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEE
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 146 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 146 (257)
..+.+|+-+|+|. |......++.+ +.+|+++|.++.-...+... ...+. +..+. . ...|+|+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~----------G~~vv--~leEa-l--~~ADVVI 314 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALME----------GYQVL--TLEDV-V--SEADIFV 314 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhc----------CCeec--cHHHH-H--hhCCEEE
Confidence 4578999999985 66555556554 56899999987543333221 11111 22221 1 2479888
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
..-. ...-+.......+|+||.++.+..
T Consensus 315 ~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 315 TTTG-----NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ECCC-----CccchHHHHHhcCCCCCEEEEcCC
Confidence 6322 111223667778999999877654
No 437
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.71 E-value=14 Score=29.87 Aligned_cols=106 Identities=22% Similarity=0.187 Sum_probs=58.7
Q ss_pred CeEEEecCCC--ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEE-ccCCCCCCCCCcccEEEe
Q 025144 71 DNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAITM 147 (257)
Q Consensus 71 ~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v~~ 147 (257)
.+|+=+|.|- |.++..+.+. +....+++.|.+...++.+.+. .+.... .+... ......|+|+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~--~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLA--EAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhh--hhcccCCEEEE
Confidence 3677777663 3445555444 4556788999888777766543 111111 11101 11245799987
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHH
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWM 194 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~ 194 (257)
.-.+. ....+++++...|++|..+ +|...........+....
T Consensus 71 avPi~---~~~~~l~~l~~~l~~g~iv--~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 71 AVPIE---ATEEVLKELAPHLKKGAIV--TDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred eccHH---HHHHHHHHhcccCCCCCEE--EecccccHHHHHHHHHhc
Confidence 55433 3466788888888887654 444443434444443333
No 438
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=76.59 E-value=37 Score=28.41 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=56.7
Q ss_pred CCCCCCeEEEecCC-CChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------CC
Q 025144 66 GAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------PF 137 (257)
Q Consensus 66 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~~ 137 (257)
...++.+||-.|+| .|..+..+++.. +.+ +++++.+++..+.+++. + -..++..+-.+. ..
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~--G~~~vi~~~~s~~~~~~~~~~----g-----~~~v~~~~~~~~~~~l~~~~ 252 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAF--GASPIIAVDVRDEKLAKAKEL----G-----ATHTVNAAKEDAVAAIREIT 252 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHh----C-----CceEecCCcccHHHHHHHHh
Confidence 34667788877765 466667777764 455 88898888776665432 1 112222211111 01
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
....+|+|+..-. . ...+..+.+.|+++|.++...
T Consensus 253 ~~~~~d~vld~vg-----~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 253 GGRGVDVVVEALG-----K-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCCEEEEeCC-----C-HHHHHHHHHHHhcCCEEEEEc
Confidence 2356899885321 1 125677888999999987654
No 439
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=76.33 E-value=7.4 Score=31.53 Aligned_cols=48 Identities=10% Similarity=0.237 Sum_probs=37.0
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
.+..+.+|+-+|+|-.....++.+. ..+|+++|+++..+..-+-++..
T Consensus 60 ~~g~ghrivtigSGGcn~L~ylsr~---Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYLSRA---PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHhhcC---CceeEEEeCCHHHHHHHHHHHHH
Confidence 3456789999999877677777654 46999999999988776666544
No 440
>PRK06223 malate dehydrogenase; Reviewed
Probab=76.18 E-value=41 Score=27.48 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=25.1
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHH
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQL 107 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~ 107 (257)
.+|.=+|+|. |......+...+.. ++..+|.+++..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~ 39 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVP 39 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchh
Confidence 3788899987 76655555442223 999999988764
No 441
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=76.05 E-value=15 Score=31.59 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=67.2
Q ss_pred CCCCeEEEecC-CCCh------hHHHHHHHhCCCceEEEEe-CChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---
Q 025144 68 KTGDNVLDVCC-GSGD------LSFLLSEQVGSQGKVIGLD-FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 136 (257)
Q Consensus 68 ~~~~~vLdiG~-G~G~------~~~~l~~~~~~~~~v~~~D-~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--- 136 (257)
.++..||=+|- |+|- ++.++.++ +...-+++.| +-|.++++.+..... -++.++..+...-|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~RpAA~eQL~~La~q------~~v~~f~~~~~~~Pv~I 170 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRPAAIEQLKQLAEQ------VGVPFFGSGTEKDPVEI 170 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCChHHHHHHHHHHHH------cCCceecCCCCCCHHHH
Confidence 34567888875 5554 34455443 3344567777 456777777766544 35666665433322
Q ss_pred -------CCCCcccEEEeccc-ccCc-ccHHHHHHHHHhcccCCCEEEEEeecC
Q 025144 137 -------FSDCFFDAITMGYG-LRNV-VDKRKALEESFRVLKPGSRISVLDFNK 181 (257)
Q Consensus 137 -------~~~~~~D~v~~~~~-l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 181 (257)
+..+.||+|++.-. =+++ +++..-+..++++++|+-.|+++|-..
T Consensus 171 ak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~ 224 (451)
T COG0541 171 AKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI 224 (451)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 22466999997433 2233 356777999999999999999987543
No 442
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=75.63 E-value=41 Score=27.81 Aligned_cols=105 Identities=13% Similarity=0.040 Sum_probs=56.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+.+|.=+|+|. |....+++...+-..++..+|++.+.++--..-+...... ..++.+...|.+++ ...|+|+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~-~~~~~i~~~~~~~~----~~adivIi 79 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPF-TSPTKIYAGDYSDC----KDADLVVI 79 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccc-cCCeEEEeCCHHHh----CCCCEEEE
Confidence 456999999976 6655555544222338999999776543322222211110 12345554444443 34799998
Q ss_pred cccccCccc---------HHHHHHHHHhccc---CCCEEEEEe
Q 025144 148 GYGLRNVVD---------KRKALEESFRVLK---PGSRISVLD 178 (257)
Q Consensus 148 ~~~l~~~~~---------~~~~l~~~~~~Lk---~gG~l~~~~ 178 (257)
......-+. -...++++...++ |+|.+++..
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 766543321 1223445444442 688876653
No 443
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=75.45 E-value=0.67 Score=34.30 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=31.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhh
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
++.+|+=+|.|. |..+..++..+ +++++.+|..+..++..+..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~ 62 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESL 62 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcc
Confidence 457999999995 77777788775 78999999988777766554
No 444
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=75.37 E-value=6.8 Score=29.21 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=32.8
Q ss_pred CCCCcccEEEecccccCcc------------cHHHHHHHHHhcccCCCEEEEEeec
Q 025144 137 FSDCFFDAITMGYGLRNVV------------DKRKALEESFRVLKPGSRISVLDFN 180 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~------------~~~~~l~~~~~~Lk~gG~l~~~~~~ 180 (257)
...+..|+|+++.+|+.+. ++++++.++.++|+++..++..+..
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~ 101 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAM 101 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCC
Confidence 3467789999999988662 3577788888888888877765533
No 445
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=75.33 E-value=19 Score=31.94 Aligned_cols=97 Identities=13% Similarity=0.030 Sum_probs=53.0
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhh----c----------cCCCeeEEEccCCC
Q 025144 70 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----A----------CYKNIEWVEGDALD 134 (257)
Q Consensus 70 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~----------~~~~~~~~~~d~~~ 134 (257)
-.+|.=||+|+ |.-....+.. .+.+|+..|.+++.++.+.++++..-. . ...++.. ..|...
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-~~~~~~ 81 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP-VTDLHA 81 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE-eCCHHH
Confidence 35788899885 4333333222 378999999999999887654332100 0 0012222 223222
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEE
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
+ ...|+|+-. +....+-...++..+.+.++++..|
T Consensus 82 l----~~aDlVIEa-v~E~~~vK~~vf~~l~~~~~~~~Il 116 (503)
T TIGR02279 82 L----ADAGLVIEA-IVENLEVKKALFAQLEELCPADTII 116 (503)
T ss_pred h----CCCCEEEEc-CcCcHHHHHHHHHHHHhhCCCCeEE
Confidence 2 247888753 2333333455677777777766543
No 446
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=75.31 E-value=45 Score=27.50 Aligned_cols=97 Identities=22% Similarity=0.231 Sum_probs=55.9
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCC-ceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------C
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~ 136 (257)
....++.+||=.|+|. |..+..+++.. + .++++++.++.....+++. + --.++...-.+. .
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~----g-----~~~~v~~~~~~~~~~i~~~ 230 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLY--SPSKIIMVDLDDNRLEVAKKL----G-----ATHTVNSAKGDAIEQVLEL 230 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHh----C-----CCceeccccccHHHHHHHH
Confidence 3456777877777653 55556677764 4 5788898877666655432 1 011111111110 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.....+|+++-.- .. ...+..+.+.|+++|.++...
T Consensus 231 ~~~~~~d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 231 TDGRGVDVVIEAV-----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred hCCCCCCEEEECC-----CC-HHHHHHHHHhccCCcEEEEec
Confidence 1234689887432 11 335777889999999987654
No 447
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.23 E-value=17 Score=27.57 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=46.2
Q ss_pred CCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEE
Q 025144 67 AKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 145 (257)
Q Consensus 67 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 145 (257)
...+.+||-+|.= +|.+...++.. ..+|+.+|+.|.|-.... +++.|..+ ..++.+.+|+|
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~---~~~vtv~Di~p~~r~~lp-----------~~v~Fr~~----~~~~~G~~Dli 103 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK---ADKVTVVDIHPFMRGFLP-----------NNVKFRNL----LKFIRGEVDLI 103 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc---cceEEEecCCHHHHhcCC-----------CCccHhhh----cCCCCCceeEE
Confidence 3456789999873 67776666543 579999999987644332 34555444 23456789999
Q ss_pred EecccccCc
Q 025144 146 TMGYGLRNV 154 (257)
Q Consensus 146 ~~~~~l~~~ 154 (257)
+-.-.+.-.
T Consensus 104 vDlTGlGG~ 112 (254)
T COG4017 104 VDLTGLGGI 112 (254)
T ss_pred EeccccCCC
Confidence 865555544
No 448
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=75.10 E-value=54 Score=28.29 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=25.2
Q ss_pred CeEEEecCCC-ChhH-HHHHHHhCCCceEEEEeCChhHHHHHH
Q 025144 71 DNVLDVCCGS-GDLS-FLLSEQVGSQGKVIGLDFSKNQLSMAS 111 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~-~~l~~~~~~~~~v~~~D~s~~~~~~a~ 111 (257)
.+|.=||.|. |... ..|++ .+.+|+++|.+++.++..+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHH
Confidence 3677788774 3332 33333 3679999999998887643
No 449
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=75.09 E-value=27 Score=28.57 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=48.2
Q ss_pred ecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecccccCc
Q 025144 76 VCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV 154 (257)
Q Consensus 76 iG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 154 (257)
||+|. |....+++...+-..++..+|+..+..+--..-+.........++.+...|..++ ...|+|+........
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~----~daDivVitag~~rk 77 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC----KDADLVVITAGAPQK 77 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH----CCCCEEEECCCCCCC
Confidence 46654 5544444433233348999999765433222212111100012344444443333 347999987765433
Q ss_pred cc-------------HHHHHHHHHhcccCCCEEEEEe
Q 025144 155 VD-------------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 155 ~~-------------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+. .......+.+. .|+|.+++..
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 113 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVAT 113 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeC
Confidence 31 12234444443 5788876653
No 450
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.73 E-value=41 Score=27.51 Aligned_cols=89 Identities=17% Similarity=0.042 Sum_probs=51.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+.+|+=+|.|. |......+..+ +.+|+++|.+++..+.++.. ...... ..++.-.-..+|+|+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~----------G~~~~~--~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEM----------GLSPFH--LSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHc----------CCeeec--HHHHHHHhCCCCEEEE
Confidence 578999999874 45555555553 57999999997765554431 122221 1111101135899987
Q ss_pred cccccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 148 GYGLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.-.. .-+-+...+.++|++.++-.
T Consensus 217 t~p~------~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 217 TIPA------LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred CCCh------hhhhHHHHHcCCCCcEEEEE
Confidence 4321 12234566778888766533
No 451
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=74.66 E-value=9.4 Score=30.96 Aligned_cols=75 Identities=11% Similarity=0.055 Sum_probs=57.9
Q ss_pred EEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--CCCCcccEEEecccccCccc--HHHHHHHHHhcccCCCE
Q 025144 98 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSR 173 (257)
Q Consensus 98 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~ 173 (257)
.-..+.+...+.++.++ .++.+.++|+.++- -+.+..|-++...+-.++++ ...++.++.+-+.+|..
T Consensus 290 lP~yl~~~~YEsir~n~--------~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~ 361 (414)
T COG5379 290 LPAYLDEGVYESIRQNL--------RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGAR 361 (414)
T ss_pred CChhhchhhHHHHHhhh--------hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcE
Confidence 34455566666666665 57899999998754 36688999999888888864 68899999999999999
Q ss_pred EEEEeec
Q 025144 174 ISVLDFN 180 (257)
Q Consensus 174 l~~~~~~ 180 (257)
+++-...
T Consensus 362 VifRtaa 368 (414)
T COG5379 362 VIFRTAA 368 (414)
T ss_pred EEEeccc
Confidence 9886543
No 452
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=74.36 E-value=47 Score=27.23 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=40.2
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEeccc
Q 025144 72 NVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 150 (257)
Q Consensus 72 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 150 (257)
+|.=+|+|. |......+...+...++..+|.+++..+.....+.........+..+...+..++ ...|+|+....
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l----~~aDIVIitag 77 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDC----KDADIVVITAG 77 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHh----CCCCEEEEccC
Confidence 577788875 4444443333222258999999887655444333221100002333333443332 45899998665
Q ss_pred cc
Q 025144 151 LR 152 (257)
Q Consensus 151 l~ 152 (257)
..
T Consensus 78 ~~ 79 (306)
T cd05291 78 AP 79 (306)
T ss_pred CC
Confidence 53
No 453
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=73.67 E-value=21 Score=27.83 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=43.2
Q ss_pred eEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEE
Q 025144 72 NVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 146 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~ 146 (257)
+++=+|||. ++..+++.+. .+.+|+.+|.+++.++.....- .....+++|..+.. ..-..+|+++
T Consensus 2 ~iiIiG~G~--vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~--------~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 2 KIIIIGAGR--VGRSVARELSEEGHNVVLIDRDEERVEEFLADE--------LDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred EEEEECCcH--HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh--------cceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 466677764 4444444432 3579999999998877633311 36788889988742 2335689988
Q ss_pred ec
Q 025144 147 MG 148 (257)
Q Consensus 147 ~~ 148 (257)
+.
T Consensus 72 a~ 73 (225)
T COG0569 72 AA 73 (225)
T ss_pred Ee
Confidence 63
No 454
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=73.42 E-value=46 Score=26.73 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=57.5
Q ss_pred hCCCCCCeEEEecC--CCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------C
Q 025144 65 SGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~ 136 (257)
....++.+|+-.|| +.|..+..+++.. +.++++++.+++..+.+++. + . -.++..+..+. .
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g----~-~~~~~~~~~~~~~~i~~~ 203 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARAL----G----A-DHVIDYRDPDLRERVKAL 203 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHc----C----C-ceeeecCCccHHHHHHHH
Confidence 45667889999997 3566677777764 57899999888776666432 1 0 11111111111 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+...+|+++.... ...+..+.+.++++|.++...
T Consensus 204 ~~~~~~d~v~~~~g-------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 204 TGGRGVDVVYDPVG-------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred cCCCCcEEEEECcc-------HHHHHHHHHhhccCCEEEEEc
Confidence 12345898875332 134556677889999887654
No 455
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=73.21 E-value=29 Score=24.29 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=51.9
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHH
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 219 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
+-.|+|++.+--.. .++...|-.+.+.|..+|.+.+..+.....
T Consensus 44 dvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~gr~----------------------------------- 87 (127)
T PF11253_consen 44 DVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAGRP----------------------------------- 87 (127)
T ss_pred ccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCCCC-----------------------------------
Confidence 45788876443211 257778888999999999998887553221
Q ss_pred hccCCHHHHHHHHHHcCceeeEEeeecCce
Q 025144 220 REFLTGKDLEKLALEIGFSRAKHYELSGGL 249 (257)
Q Consensus 220 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~g~ 249 (257)
...++.++++....+|+...+........
T Consensus 88 -g~V~~~~I~eaA~taGL~~t~~~~v~~dW 116 (127)
T PF11253_consen 88 -GHVEPSDIREAAPTAGLVQTKSCAVGDDW 116 (127)
T ss_pred -CCCCHHHHHHHHhhcCCeeeeeeccCCCc
Confidence 13477899999999999888777665433
No 456
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=73.01 E-value=33 Score=30.49 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=53.9
Q ss_pred CCeEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh----hc----------cCCCeeEEEccCC
Q 025144 70 GDNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KA----------CYKNIEWVEGDAL 133 (257)
Q Consensus 70 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~----------~~~~~~~~~~d~~ 133 (257)
-.+|-=||+|+ |. ++..++. .+.+|+..|.+++.++.+.+++...- .. ...++... .|..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQ---AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 35788899884 43 3333443 37899999999999988765543210 00 00122322 2332
Q ss_pred CCCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 134 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 134 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
.+ ...|+|+-. +....+-...++..+.+.++++..+.
T Consensus 83 ~~----~~aDlViEa-v~E~~~vK~~vf~~l~~~~~~~aila 119 (507)
T PRK08268 83 DL----ADCDLVVEA-IVERLDVKQALFAQLEAIVSPDCILA 119 (507)
T ss_pred Hh----CCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEE
Confidence 22 247888753 33333334555677777767665553
No 457
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=72.93 E-value=13 Score=30.62 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=50.1
Q ss_pred EEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-------CCCCcccEEE
Q 025144 74 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-------FSDCFFDAIT 146 (257)
Q Consensus 74 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~D~v~ 146 (257)
+|||.|+-.+-..+-.. ..+....++|++......|.+++.+.+.. ..+.+++....+.. .++..||.+.
T Consensus 107 iDIgtgasci~~llg~r-q~n~~f~~teidd~s~~~a~snV~qn~ls--s~ikvV~~~~~ktll~d~~~~~~e~~ydFcM 183 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGAR-QNNWYFLATEIDDMSFNYAKSNVEQNNLS--SLIKVVKVEPQKTLLMDALKEESEIIYDFCM 183 (419)
T ss_pred eeccCchhhhHHhhhch-hccceeeeeeccccccchhhccccccccc--cceeeEEecchhhcchhhhccCccceeeEEe
Confidence 78887776555444333 24578999999999999999988765544 56777766443211 1234588888
Q ss_pred eccccc
Q 025144 147 MGYGLR 152 (257)
Q Consensus 147 ~~~~l~ 152 (257)
|+..+.
T Consensus 184 cNPPFf 189 (419)
T KOG2912|consen 184 CNPPFF 189 (419)
T ss_pred cCCchh
Confidence 776543
No 458
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.91 E-value=22 Score=28.68 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=51.7
Q ss_pred eEEEecCCC-C-hhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhh----hhcc----------CCCeeEEEccCCCC
Q 025144 72 NVLDVCCGS-G-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV----SKAC----------YKNIEWVEGDALDL 135 (257)
Q Consensus 72 ~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~----~~~~----------~~~~~~~~~d~~~~ 135 (257)
+|.=||+|. | .++..++.. +.+|+++|.+++.++.+.++++.. .... ..++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~---g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA---GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC---CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 577788874 3 333444333 569999999999987665433211 0000 002221 223222
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 174 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 174 (257)
-...|+|+..- -....-...++.++.+.++++..+
T Consensus 80 ---~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 80 ---LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred ---hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEE
Confidence 14478887532 111222357888888888888766
No 459
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=72.70 E-value=32 Score=24.55 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=52.7
Q ss_pred eEEEecC-CC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 72 NVLDVCC-GS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 72 ~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+|.=+|+ |. |.....++...+...++..+|.++...+--..-+.........+..+...+..++ ...|+|++..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~----~~aDivvita 77 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL----KDADIVVITA 77 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG----TTESEEEETT
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccc----ccccEEEEec
Confidence 5666787 53 6555555554344568999999876443322222221111112345555554443 3489999877
Q ss_pred cccCcc--cH-----------HHHHHHHHhcccCCCEEEEE
Q 025144 150 GLRNVV--DK-----------RKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 150 ~l~~~~--~~-----------~~~l~~~~~~Lk~gG~l~~~ 177 (257)
.....+ +. ....+.+.+. .|+|.+++.
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivv 117 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVV 117 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEe
Confidence 654432 11 2223333333 378887665
No 460
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=72.49 E-value=50 Score=26.73 Aligned_cols=96 Identities=16% Similarity=0.063 Sum_probs=49.8
Q ss_pred eEEEecCCC-Chh-HHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEecc
Q 025144 72 NVLDVCCGS-GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 149 (257)
Q Consensus 72 ~vLdiG~G~-G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 149 (257)
+|+=+|+|. |.. +..|.+ .+.+|+.++.+++.++..++.-.... . ........-..+.. ..+.+|+|++.-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~g~~~~-~--~~~~~~~~~~~~~~-~~~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ---AGHDVTLVARRGAHLDALNENGLRLE-D--GEITVPVLAADDPA-ELGPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCCeEEEEECChHHHHHHHHcCCccc-C--CceeecccCCCChh-HcCCCCEEEEec
Confidence 577888875 332 333332 35789999987766655543210000 0 11100000011111 115689998754
Q ss_pred cccCcccHHHHHHHHHhcccCCCEEEEE
Q 025144 150 GLRNVVDKRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 150 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
--. +....++.+...+.++..++..
T Consensus 75 k~~---~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 75 KAY---QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred ccc---cHHHHHHHHhhhcCCCCEEEEe
Confidence 322 4567788888888777666543
No 461
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=72.35 E-value=54 Score=27.05 Aligned_cols=94 Identities=24% Similarity=0.366 Sum_probs=54.3
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc---cC---CCCCCC
Q 025144 67 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DA---LDLPFS 138 (257)
Q Consensus 67 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~---~~~~~~ 138 (257)
..++.+||-.|+|. |..+..+++.. +. .+++++-+++-...+++. + --.++.. +. ... ..
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~----g-----~~~~~~~~~~~~~~~~~~-~~ 228 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAKKM----G-----ADVVINPREEDVVEVKSV-TD 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHh----C-----cceeeCcccccHHHHHHH-cC
Confidence 35677888877654 66777777774 45 688887666555544432 1 0011111 11 111 12
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
.+.+|+++-.-. ....+..+.+.|+++|.++...
T Consensus 229 ~~~vd~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 229 GTGVDVVLEMSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCCCCEEEECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 356899985321 1345667788899999987654
No 462
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.23 E-value=37 Score=31.67 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=58.0
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh----hc----------cCCCeeEEEccCCCC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KA----------CYKNIEWVEGDALDL 135 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~----------~~~~~~~~~~d~~~~ 135 (257)
.+|.-||+|+ |.-...+... .+.+|+.+|.+++.++.+..++...- .. ...++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 4799999997 5444444333 37899999999999988776543210 00 00123222 222221
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
...|+|+= .+...++-...++.++-+.++|+..|.
T Consensus 391 ----~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ila 425 (715)
T PRK11730 391 ----ERVDVVVE-AVVENPKVKAAVLAEVEQKVREDTILA 425 (715)
T ss_pred ----cCCCEEEe-cccCcHHHHHHHHHHHHhhCCCCcEEE
Confidence 34677763 234444445677888888888886664
No 463
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=72.04 E-value=57 Score=27.23 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=58.7
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------C
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P 136 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~ 136 (257)
....++.+||-.|+| .|..+..+++.. +.. +++++.++...+.+++ + + -..++..+..+. .
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~--G~~~Vi~~~~~~~~~~~~~~-~---g-----~~~vv~~~~~~~~~~l~~~ 246 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIA--GASRIIAVDPVPEKLELARR-F---G-----ATHTVNASEDDAVEAVRDL 246 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH-h---C-----CeEEeCCCCccHHHHHHHH
Confidence 456677889888875 366777777774 454 8899888877665542 2 1 111221111110 0
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 137 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+...+|+++-.-. ....+..+.+.|+++|.++....
T Consensus 247 ~~~~~vd~vld~~~------~~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 247 TDGRGADYAFEAVG------RAATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred cCCCCCCEEEEcCC------ChHHHHHHHHHhhcCCeEEEEec
Confidence 12355898874221 13456778888999999876643
No 464
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.88 E-value=46 Score=26.11 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=44.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC--------C-
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------F- 137 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------~- 137 (257)
.++++|-.|+++ +.....+++.+ ..+.+|+.++.+....+.+++.. . .++.+++.|+.+.. .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~---~----~~~~~~~~Dl~~~~~v~~~~~~~~ 78 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV---D----EEDLLVECDVASDESIERAFATIK 78 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc---c----CceeEEeCCCCCHHHHHHHHHHHH
Confidence 356788888763 45555555443 24678888877643322222211 1 35778889987642 0
Q ss_pred -CCCcccEEEecccc
Q 025144 138 -SDCFFDAITMGYGL 151 (257)
Q Consensus 138 -~~~~~D~v~~~~~l 151 (257)
..+..|+++.+...
T Consensus 79 ~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 79 ERVGKIDGIVHAIAY 93 (252)
T ss_pred HHhCCCCEEEEcccc
Confidence 12568999876654
No 465
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=71.84 E-value=4.3 Score=39.35 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=58.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCC-CCCcccEEEe
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~ 147 (257)
.+..+||+|.|.-.-...+. ++...|+.+|.-|.. +...-+. -...+++.|...... ....+|.+.|
T Consensus 822 ~~~~~lDLGTGPE~RiLsli---P~~~pvtmvD~RP~a-----e~m~~w~----t~T~y~~~DYl~~~~~~~~~~D~vta 889 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLI---PPDTPVTMVDTRPFA-----EPMNCWN----TQTQYIQADYLSDAWWNGTPFDAVTA 889 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS----TTSEEEEEESS--S-----SSCCCCS----TTEEEEES-TTSCCGGCC---SEEEE
T ss_pred CcceEEEccCCccceeeecc---CCCCceEEEecCCcc-----cccchhh----hcceeeeeccccceeEecCCCCEEEE
Confidence 45799999998865444443 567899999985532 1110000 357899999987542 3457999999
Q ss_pred cccccCc-----ccHHHHHHHHHhcccCCCE-EEEEeecCC
Q 025144 148 GYGLRNV-----VDKRKALEESFRVLKPGSR-ISVLDFNKS 182 (257)
Q Consensus 148 ~~~l~~~-----~~~~~~l~~~~~~Lk~gG~-l~~~~~~~~ 182 (257)
.++|... -++...++++.+.+++.|. -++...+.|
T Consensus 890 ilSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~lQLNcP 930 (1289)
T PF06016_consen 890 ILSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWLQLNCP 930 (1289)
T ss_dssp CTCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEEE-B--
T ss_pred EeeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEEEecCC
Confidence 9887755 2578888999888887664 334444443
No 466
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=71.73 E-value=61 Score=27.40 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=57.4
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCe-eEEEc---cC----CC
Q 025144 65 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEG---DA----LD 134 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~---d~----~~ 134 (257)
.+..++.+||=.|+|. |..+..+++.. +. .+++++.+++..+.+++. +. ..+ ..... +. ..
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~--G~~~vi~~~~~~~~~~~~~~~----g~---~~~v~~~~~~~~~~~~~v~~ 269 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAA--GASKVIAFEISEERRNLAKEM----GA---DYVFNPTKMRDCLSGEKVME 269 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHc----CC---CEEEcccccccccHHHHHHH
Confidence 3566788888887763 55666677764 45 799999888755554442 10 111 00100 10 01
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
. .+...+|+|+.... .....+..+.+.|+++|.++...
T Consensus 270 ~-~~g~gvDvvld~~g-----~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 270 V-TKGWGADIQVEAAG-----APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred h-cCCCCCCEEEECCC-----CcHHHHHHHHHHHHcCCEEEEEC
Confidence 1 22345898875321 22345677788889999987654
No 467
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=71.39 E-value=43 Score=31.24 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=58.7
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhh----hc----------cCCCeeEEEccCCCC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KA----------CYKNIEWVEGDALDL 135 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~----------~~~~~~~~~~d~~~~ 135 (257)
.+|.-||+|+ |.-...+... .+.+|+.+|.+++.++.+.+++...- .. ...+++.. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSAS--KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH-
Confidence 4799999996 4433333333 37899999999999988776543210 00 00122221 12211
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
-...|+|+= .+...++-..+++.++-++++|+..|.-
T Consensus 390 ---~~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ilas 426 (714)
T TIGR02437 390 ---FDNVDIVVE-AVVENPKVKAAVLAEVEQHVREDAILAS 426 (714)
T ss_pred ---hcCCCEEEE-cCcccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 134787763 2445555567788888888888876643
No 468
>PLN00203 glutamyl-tRNA reductase
Probab=70.77 E-value=50 Score=29.48 Aligned_cols=106 Identities=11% Similarity=0.044 Sum_probs=51.0
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCCcccEEEe
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 147 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 147 (257)
.+.+|+=||+|. |......+... ...++++++.+++..+.....+.. ..+.+... .+..-.-...|+|++
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~-G~~~V~V~nRs~era~~La~~~~g------~~i~~~~~--~dl~~al~~aDVVIs 335 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSK-GCTKMVVVNRSEERVAALREEFPD------VEIIYKPL--DEMLACAAEADVVFT 335 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhCC------CceEeecH--hhHHHHHhcCCEEEE
Confidence 367899999863 33333222221 123799999988766555444310 11222222 221111245899987
Q ss_pred cccccCcccHHHHHHHHHhcccC-CCEEEEEeecCCC
Q 025144 148 GYGLRNVVDKRKALEESFRVLKP-GSRISVLDFNKST 183 (257)
Q Consensus 148 ~~~l~~~~~~~~~l~~~~~~Lk~-gG~l~~~~~~~~~ 183 (257)
.-.-.+.--....++.+...-+. +..++++|..-|.
T Consensus 336 AT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 336 STSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred ccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 53322221123344444322111 3346677776554
No 469
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=70.69 E-value=47 Score=25.70 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=63.4
Q ss_pred HHHHHHhhhCCCCCCeEEEecCCCCh--hHH--HHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC
Q 025144 57 WKRMAVSWSGAKTGDNVLDVCCGSGD--LSF--LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 132 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~vLdiG~G~G~--~~~--~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 132 (257)
..+++..+..-..-..|++..++.|. .++ ..+.+ +-+.++++|-+++..+...++.+...+.. .-++|+.++.
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~--~~vEfvvg~~ 105 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLS--DVVEFVVGEA 105 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhcccc--ccceEEecCC
Confidence 44555555544455688988665432 233 33333 34678899998888777777776544432 3468887774
Q ss_pred C-CCCCCCCcccEEEecccccCcccHH-HHHHHHHhcccCCCEEEEE
Q 025144 133 L-DLPFSDCFFDAITMGYGLRNVVDKR-KALEESFRVLKPGSRISVL 177 (257)
Q Consensus 133 ~-~~~~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~Lk~gG~l~~~ 177 (257)
. ++-..-...|.++...- ..+.. ++|+.+ + +.|.|.+++.
T Consensus 106 ~e~~~~~~~~iDF~vVDc~---~~d~~~~vl~~~-~-~~~~GaVVV~ 147 (218)
T PF07279_consen 106 PEEVMPGLKGIDFVVVDCK---REDFAARVLRAA-K-LSPRGAVVVC 147 (218)
T ss_pred HHHHHhhccCCCEEEEeCC---chhHHHHHHHHh-c-cCCCceEEEE
Confidence 3 22111245888876543 23334 444432 2 4456666553
No 470
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.60 E-value=42 Score=27.47 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=28.0
Q ss_pred CeEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhh
Q 025144 71 DNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 113 (257)
Q Consensus 71 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 113 (257)
.+|.=||+|. |. ++..+++ .+.+|+++|.+++.++.+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~---~g~~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR---KGLQVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHH
Confidence 4688888885 33 3333332 357899999999988887764
No 471
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=70.54 E-value=58 Score=27.28 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=58.5
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEc--cCCC-C-CC
Q 025144 64 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG--DALD-L-PF 137 (257)
Q Consensus 64 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~ 137 (257)
..+..++.+||=.|+|. |..+..+++.. +. .+++++.+++..+.+++.- . . .-+..... +... + ..
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~--G~~~v~~~~~~~~~~~~~~~~g-~---~--~~v~~~~~~~~~~~~l~~~ 249 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAA--GASRIIAVDINKDKFEKAKQLG-A---T--ECINPRDQDKPIVEVLTEM 249 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHhC-C---C--eecccccccchHHHHHHHH
Confidence 34567788888888753 56666777774 44 4888898887777764321 0 0 00111111 1100 0 01
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhccc-CCCEEEEEee
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLK-PGSRISVLDF 179 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~ 179 (257)
..+.+|+|+-... ....+....+.|+ ++|.++....
T Consensus 250 ~~~~~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 250 TDGGVDYAFEVIG------SADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred hCCCCcEEEECCC------CHHHHHHHHHHhccCCCEEEEEec
Confidence 1246898874321 1345667788888 9999876643
No 472
>PRK05872 short chain dehydrogenase; Provisional
Probab=70.41 E-value=56 Score=26.43 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=46.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.+.++|-.|+ +|.++..+++.+ ..+.+|..++.+++.++...+.+.. + ..+..+..|+.+.. -
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~----~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D----DRVLTVVADVTDLAAMQAAAEEAVE 81 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3567887775 444555554443 2367899999988766655444321 1 34556668887632 0
Q ss_pred CCCcccEEEecccc
Q 025144 138 SDCFFDAITMGYGL 151 (257)
Q Consensus 138 ~~~~~D~v~~~~~l 151 (257)
..+..|+++.+...
T Consensus 82 ~~g~id~vI~nAG~ 95 (296)
T PRK05872 82 RFGGIDVVVANAGI 95 (296)
T ss_pred HcCCCCEEEECCCc
Confidence 12568999987664
No 473
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.38 E-value=60 Score=26.78 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHH-HHhhhhhhhhccCCCeeEEE-ccCCCCCCCCCcccEE
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSM-ASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAI 145 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-a~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v 145 (257)
+..+|.=+|+|. |....+.+...+-..++..+|++++..+- +......... .....+.. .|.+++ ...|+|
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~--~~~~~v~~~~dy~~~----~~adiv 75 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF--LKNPKIEADKDYSVT----ANSKVV 75 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc--CCCCEEEECCCHHHh----CCCCEE
Confidence 456899999864 54444444332334589999998764322 2222111110 01224443 455443 347999
Q ss_pred EecccccCcc--cH-----------HHHHHHHHhcccCCCEEEEEe
Q 025144 146 TMGYGLRNVV--DK-----------RKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 146 ~~~~~l~~~~--~~-----------~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+........+ +. ....+.+.+. .|+|.+++..
T Consensus 76 vitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 120 (312)
T cd05293 76 IVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS 120 (312)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence 8755543332 11 2233444444 6788876653
No 474
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=70.28 E-value=53 Score=26.12 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=91.6
Q ss_pred hhHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhCCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHH
Q 025144 29 SERQELFSRIAPVYDNLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLS 108 (257)
Q Consensus 29 ~~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~ 108 (257)
+.+.++=..++..++... ..+.+...+...-..+++.+ |..=||+-.++..+.+. .-++.++|+-++-..
T Consensus 55 ~ktgE~~~GI~RL~~a~~------lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~ 124 (279)
T COG2961 55 EKTGEYEQGIARLWQAAD------LPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAP 124 (279)
T ss_pred hhhhHHHHHHHHHHhcCC------chHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHH
Confidence 334444444555555421 23344455555555666655 88889999999988865 458999999998888
Q ss_pred HHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEEecccccCcccHHHHHHHHHhccc--CCCEEEEEe
Q 025144 109 MASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLK--PGSRISVLD 178 (257)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk--~gG~l~~~~ 178 (257)
..++++... .++.+.++|..... .|.+.=-+|++.-.++.-.|...+...+.+.++ ++|...+--
T Consensus 125 ~L~~~f~~d-----~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWY 195 (279)
T COG2961 125 LLRNNFAGD-----RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWY 195 (279)
T ss_pred HHHHHhCCC-----cceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEE
Confidence 888877532 68999999987521 234556788888888877787777777777776 367665543
No 475
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=70.05 E-value=6.2 Score=32.09 Aligned_cols=34 Identities=29% Similarity=0.581 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhcccCCCEEEEEeecCCCchhHH
Q 025144 155 VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 188 (257)
Q Consensus 155 ~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 188 (257)
..++..|....++|+|||+++++.++.-......
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRiVK 254 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLEDRIVK 254 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHHHHHH
Confidence 4578899999999999999999988765544433
No 476
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=69.98 E-value=61 Score=26.69 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=55.4
Q ss_pred CCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-CCCCCccc
Q 025144 66 GAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFD 143 (257)
Q Consensus 66 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D 143 (257)
...++.+|+=.|+| .|..+..+++.. +.++++++.+++..+.+++.- --.++.....+. ....+.+|
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g---------~~~vi~~~~~~~~~~~~~~~d 234 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAKAL--GAEVTAFSRSPSKKEDALKLG---------ADEFIATKDPEAMKKAAGSLD 234 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHcC---------CcEEecCcchhhhhhccCCce
Confidence 45667777777774 356666667664 568999998887777664321 001111110000 01135689
Q ss_pred EEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 144 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 144 ~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
+++....- ...+..+.+.|+++|.++...
T Consensus 235 ~v~~~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 235 LIIDTVSA------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EEEECCCC------cchHHHHHHHhcCCCEEEEEe
Confidence 88843221 123566778889999987654
No 477
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=69.60 E-value=62 Score=26.65 Aligned_cols=96 Identities=24% Similarity=0.256 Sum_probs=55.3
Q ss_pred CCCCCeEEEecCC-CChhHHHHHHHhCCCce-EEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------CCC
Q 025144 67 AKTGDNVLDVCCG-SGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------PFS 138 (257)
Q Consensus 67 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 138 (257)
..++.+||-.|+| .|..+..+++.. +.+ +++++.++.-.+.+++.- --.++...-.++ ...
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~~g---------~~~~v~~~~~~~~~~l~~~~~ 227 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKKMG---------ATYVVNPFKEDVVKEVADLTD 227 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhC---------CcEEEcccccCHHHHHHHhcC
Confidence 4567777777765 356667777774 455 888887776655554321 011111111110 012
Q ss_pred CCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 139 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+.+|+++-... ....+..+.+.|+++|.++....
T Consensus 228 ~~~~d~vld~~g------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 228 GEGVDVFLEMSG------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCCCCEEEECCC------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 356899985321 13457778888999999876543
No 478
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=69.38 E-value=27 Score=27.86 Aligned_cols=97 Identities=14% Similarity=0.055 Sum_probs=49.6
Q ss_pred hCCCCCCeEEEecCCCCh----hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCCCC
Q 025144 65 SGAKTGDNVLDVCCGSGD----LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 140 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G~G~----~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (257)
+..+.+.|||-+|+|+-. -+..|.+.++.++-++-.|+..- .. +.-..+.+|...+.. +.
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~--------vS-------Da~~~~~~Dc~t~~~-~~ 120 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY--------VS-------DADQSIVGDCRTYMP-PD 120 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B--------SSSEEEES-GGGEEE-SS
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh--------cc-------ccCCceeccccccCC-CC
Confidence 455677899999998643 34455555544555666665331 11 234567788777654 47
Q ss_pred cccEEEeccc---ccCc-------cc-HHHHHHHHHhcccCCCEEEEE
Q 025144 141 FFDAITMGYG---LRNV-------VD-KRKALEESFRVLKPGSRISVL 177 (257)
Q Consensus 141 ~~D~v~~~~~---l~~~-------~~-~~~~l~~~~~~Lk~gG~l~~~ 177 (257)
++|+|++..- .... +. ...+..-++..|+-||.+.+-
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 8999998543 1111 01 244566677888899998763
No 479
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.99 E-value=64 Score=26.58 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHH
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMA 110 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a 110 (257)
......|+.+|||.-.....|.... .....++=+|.++......
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 4566799999999988887777763 1344677777755444433
No 480
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=68.81 E-value=28 Score=28.19 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=40.8
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhh
Q 025144 66 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 116 (257)
Q Consensus 66 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 116 (257)
...++..|||.=+|+|......... +....++|++++.++.+.+++..
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHh
Confidence 5667889999999999888766544 57899999999999999999864
No 481
>PRK06172 short chain dehydrogenase; Provisional
Probab=68.78 E-value=35 Score=26.66 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=48.4
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-----C-----C
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~ 138 (257)
+.++|-.|+ +|.....+++.+ ..+.+|..++-+++-++...+.+...+ .++.++..|+.+.. + .
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG----GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567888886 444555554433 235789999988876665555443322 46888999997642 0 0
Q ss_pred CCcccEEEecccc
Q 025144 139 DCFFDAITMGYGL 151 (257)
Q Consensus 139 ~~~~D~v~~~~~l 151 (257)
.+..|+++.+...
T Consensus 82 ~g~id~li~~ag~ 94 (253)
T PRK06172 82 YGRLDYAFNNAGI 94 (253)
T ss_pred hCCCCEEEECCCC
Confidence 1467999876553
No 482
>PRK05854 short chain dehydrogenase; Provisional
Probab=68.61 E-value=45 Score=27.29 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=48.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.+.+++=.|++ +.++..+++.+ ..+.+|+.+.-+.+-.+.+.+.+...... .++.++..|+.+.. -
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~--~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPD--AKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCC--CceEEEEecCCCHHHHHHHHHHHHH
Confidence 35577766764 44555444433 23678999998877666555544322111 36788899998742 1
Q ss_pred CCCcccEEEecccc
Q 025144 138 SDCFFDAITMGYGL 151 (257)
Q Consensus 138 ~~~~~D~v~~~~~l 151 (257)
..+..|+++.+...
T Consensus 90 ~~~~iD~li~nAG~ 103 (313)
T PRK05854 90 EGRPIHLLINNAGV 103 (313)
T ss_pred hCCCccEEEECCcc
Confidence 12568999976543
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.59 E-value=50 Score=28.61 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=53.7
Q ss_pred eEEEecCCCChhHHHHHHHhC-CCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEEE
Q 025144 72 NVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 146 (257)
Q Consensus 72 ~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~ 146 (257)
+|+=+|+ |..+..+++.+. .+.+++++|.+++.++.+++. ..+.++.+|..+.. ..-+.+|.|+
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---------~~~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---------LDVRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cCEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 4666766 667766666542 357999999999877766542 25678888887632 2235688887
Q ss_pred ecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 147 MGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 147 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
+...- ++....+....+.+.|.-.+++
T Consensus 71 ~~~~~---~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 71 AVTDS---DETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EecCC---hHHHHHHHHHHHHhcCCCeEEE
Confidence 64321 1222333344444544444444
No 484
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.47 E-value=57 Score=25.75 Aligned_cols=76 Identities=4% Similarity=0.036 Sum_probs=43.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHh-CCCceEEEEeCCh---hHHHHHHhhhhhhhhccCCCeeEEEccCCCCC-------
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQV-GSQGKVIGLDFSK---NQLSMASSRQDLVSKACYKNIEWVEGDALDLP------- 136 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~-~~~~~v~~~D~s~---~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~------- 136 (257)
.++++|-.|++. +.+...+++.+ ..+.+|+.++.+. +.++...+... + .++..+..|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~----~~~~~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--G----QESLLLPCDVTSDEEITACFE 79 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--C----CceEEEecCCCCHHHHHHHHH
Confidence 356888888762 55555555543 2366888876543 22332222221 1 46778889988742
Q ss_pred ---CCCCcccEEEeccc
Q 025144 137 ---FSDCFFDAITMGYG 150 (257)
Q Consensus 137 ---~~~~~~D~v~~~~~ 150 (257)
-..+..|+++.+..
T Consensus 80 ~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 80 TIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHhCCCccEEEECcc
Confidence 01267899886554
No 485
>PRK09291 short chain dehydrogenase; Provisional
Probab=68.03 E-value=38 Score=26.45 Aligned_cols=75 Identities=11% Similarity=-0.005 Sum_probs=45.7
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----CCCCcccEE
Q 025144 71 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 145 (257)
Q Consensus 71 ~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v 145 (257)
.+||-.|+ +|.++..+++.+ ..+.++++++.++...+......+..+ .++.++.+|+.+.. ......|++
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~id~v 77 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG----LALRVEKLDLTDAIDRAQAAEWDVDVL 77 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcceEEEeeCCCHHHHHHHhcCCCCEE
Confidence 36777775 555555555443 246789998887765544444332222 36788888987642 112468999
Q ss_pred Eeccc
Q 025144 146 TMGYG 150 (257)
Q Consensus 146 ~~~~~ 150 (257)
+.+..
T Consensus 78 i~~ag 82 (257)
T PRK09291 78 LNNAG 82 (257)
T ss_pred EECCC
Confidence 97654
No 486
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=67.92 E-value=5 Score=32.85 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=25.0
Q ss_pred cHHHHHHHHHhcccCCCEEEEEeecCCCchh
Q 025144 156 DKRKALEESFRVLKPGSRISVLDFNKSTQPF 186 (257)
Q Consensus 156 ~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 186 (257)
.+...|..+.++|+|||+++++.++.-....
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLEDRi 248 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLEDRI 248 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHHH
Confidence 4678899999999999999999877644333
No 487
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=67.84 E-value=11 Score=27.36 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcccCCCEEEEEeecCCCchhHHHHHHHHHhhhhhhhhccCCchhhhhhhHHHHhccCCHHHHHHHHHHcC
Q 025144 157 KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIG 236 (257)
Q Consensus 157 ~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 236 (257)
-..++.-+++.|.|||.+++. ...+.. ...+.+. .. .....-+--.|-++|
T Consensus 72 E~~l~~~l~~~lspg~~lfVe-Yv~DrE----T~~~lqk--G~----------------------~p~atrLGfeL~k~G 122 (192)
T COG4353 72 EVKLYKVLYNFLSPGGKLFVE-YVRDRE----TRYRLQK--GK----------------------PPVATRLGFELLKAG 122 (192)
T ss_pred HHHHHHHHHHhcCCCCceEEE-EEechh----HHHHHHc--CC----------------------CCccchhhHHHHhCc
Confidence 366788999999999999653 333221 1111111 00 112233445677899
Q ss_pred ceeeEEeeecCc
Q 025144 237 FSRAKHYELSGG 248 (257)
Q Consensus 237 f~~~~~~~~~~g 248 (257)
|+..+-+.++.|
T Consensus 123 ftwfkdWY~PEG 134 (192)
T COG4353 123 FTWFKDWYFPEG 134 (192)
T ss_pred ceeeeeeeccCc
Confidence 999998887655
No 488
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=67.81 E-value=55 Score=30.51 Aligned_cols=97 Identities=13% Similarity=-0.018 Sum_probs=57.9
Q ss_pred CeEEEecCCC-ChhHHH-HHHHhCCCceEEEEeCChhHHHHHHhhhhhhh----h----------ccCCCeeEEEccCCC
Q 025144 71 DNVLDVCCGS-GDLSFL-LSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----K----------ACYKNIEWVEGDALD 134 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~-l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~----------~~~~~~~~~~~d~~~ 134 (257)
.+|.-||+|+ |.-... ++.. .+.+|+.+|.+++.++.+..++...- . ....++.+. .|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 5899999997 544333 3323 37899999999999888766543210 0 000123322 22211
Q ss_pred CCCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEE
Q 025144 135 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 175 (257)
Q Consensus 135 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 175 (257)
+ ...|+|+= .+...++-...++.++-+.++|+..|.
T Consensus 387 ~----~~aDlViE-av~E~~~~K~~v~~~le~~~~~~~ila 422 (708)
T PRK11154 387 F----KHADVVIE-AVFEDLALKQQMVAEVEQNCAPHTIFA 422 (708)
T ss_pred h----ccCCEEee-cccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 34677763 234444445678888888888887664
No 489
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=67.60 E-value=65 Score=26.11 Aligned_cols=96 Identities=16% Similarity=0.066 Sum_probs=47.4
Q ss_pred eEEEecCCC-Ch-hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCCCCCCCcccEEEec
Q 025144 72 NVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLPFSDCFFDAITMG 148 (257)
Q Consensus 72 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~ 148 (257)
+|+=+|+|. |. ++..|++ .+.+|+.++. ++.++..++.--... ....... ..... .+.......+|+|++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~---~g~~V~~~~r-~~~~~~~~~~g~~~~-~~~~~~~-~~~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE---AGRDVTFLVR-PKRAKALRERGLVIR-SDHGDAV-VPGPVITDPEELTGPFDLVILA 75 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH---CCCceEEEec-HHHHHHHHhCCeEEE-eCCCeEE-ecceeecCHHHccCCCCEEEEE
Confidence 577788875 43 3333333 2578999998 655555443210000 0000110 01101 1111112568988864
Q ss_pred ccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 149 YGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 149 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
---. .....++.+...+.++..++.
T Consensus 76 vk~~---~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 76 VKAY---QLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred eccc---CHHHHHHHHHhhcCCCCEEEE
Confidence 3322 456677888887877765543
No 490
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.42 E-value=67 Score=26.28 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=54.2
Q ss_pred CCCeEEEecCCCCh---hHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC---------
Q 025144 69 TGDNVLDVCCGSGD---LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------- 136 (257)
Q Consensus 69 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 136 (257)
.+..||==|+|.|- .+..++++ ++.+...|++++..+...+..+.. .++..+..|+.+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~-----g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKI-----GEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhc-----CceeEEEecCCCHHHHHHHHHHH
Confidence 45678888887763 34455554 568999999998888777776543 26888999988742
Q ss_pred -CCCCcccEEEecccccC
Q 025144 137 -FSDCFFDAITMGYGLRN 153 (257)
Q Consensus 137 -~~~~~~D~v~~~~~l~~ 153 (257)
-+.+..|+++.+..+-+
T Consensus 109 k~e~G~V~ILVNNAGI~~ 126 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVT 126 (300)
T ss_pred HHhcCCceEEEecccccc
Confidence 23467999998766443
No 491
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.35 E-value=60 Score=25.59 Aligned_cols=78 Identities=6% Similarity=-0.021 Sum_probs=44.8
Q ss_pred CCCeEEEecCCCC-hhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------
Q 025144 69 TGDNVLDVCCGSG-DLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---------- 136 (257)
Q Consensus 69 ~~~~vLdiG~G~G-~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 136 (257)
.++++|-.|+++| .+...+++.+ ..+.+|..++.+....+.+++..+.. ....++..|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL-----DAPIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh-----ccceEEecCcCCHHHHHHHHHHHH
Confidence 3568888887652 5555554443 13568888888764433232222211 23456778887642
Q ss_pred CCCCcccEEEecccc
Q 025144 137 FSDCFFDAITMGYGL 151 (257)
Q Consensus 137 ~~~~~~D~v~~~~~l 151 (257)
-..+..|+++.+...
T Consensus 84 ~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 84 EEWGRLDFLLHSIAF 98 (258)
T ss_pred HHcCCCCEEEEcCcc
Confidence 012568999977654
No 492
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=67.33 E-value=70 Score=26.35 Aligned_cols=95 Identities=22% Similarity=0.233 Sum_probs=55.8
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCc-eEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC------CCCC
Q 025144 68 KTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------PFSD 139 (257)
Q Consensus 68 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~ 139 (257)
.++.+||-.|+|. |..+..+++.. +. .+.+++.+++..+.+++. + --.++...-.+. ....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~l----g-----~~~~~~~~~~~~~~~~~~~~~~ 230 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHV--GARHVVITDVNEYRLELARKM----G-----ATRAVNVAKEDLRDVMAELGMT 230 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh----C-----CcEEecCccccHHHHHHHhcCC
Confidence 4567887777654 66677777774 44 688888777666655442 1 001111111110 0123
Q ss_pred CcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 140 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 140 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
+.+|+|+-... ....+..+.+.|+++|.++....
T Consensus 231 ~~~d~v~d~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 231 EGFDVGLEMSG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 56898875221 13466778889999999887654
No 493
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=67.32 E-value=91 Score=28.26 Aligned_cols=84 Identities=12% Similarity=-0.021 Sum_probs=49.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhh-----hhccCCCeeEEEccCCCCC-C--
Q 025144 67 AKTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLV-----SKACYKNIEWVEGDALDLP-F-- 137 (257)
Q Consensus 67 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~d~~~~~-~-- 137 (257)
...+.+||-.| |+|.++..+++.+ ..+.+|.+++.+.+-++.....+... +.....++.++.+|+.+.. +
T Consensus 77 ~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 77 TKDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred cCCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 34566677666 4677777666554 34678999998876655443332211 1000135788999998742 1
Q ss_pred CCCcccEEEecccc
Q 025144 138 SDCFFDAITMGYGL 151 (257)
Q Consensus 138 ~~~~~D~v~~~~~l 151 (257)
.-+..|+|+++...
T Consensus 156 aLggiDiVVn~AG~ 169 (576)
T PLN03209 156 ALGNASVVICCIGA 169 (576)
T ss_pred HhcCCCEEEEcccc
Confidence 11458998876543
No 494
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=67.17 E-value=79 Score=27.61 Aligned_cols=107 Identities=11% Similarity=-0.076 Sum_probs=56.4
Q ss_pred CCCCeEEEecC-CC-ChhHHHHHHHh---C---C-CceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCCCC
Q 025144 68 KTGDNVLDVCC-GS-GDLSFLLSEQV---G---S-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 138 (257)
Q Consensus 68 ~~~~~vLdiG~-G~-G~~~~~l~~~~---~---~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 138 (257)
.+..+|.=+|+ |. |....+.+-.- + + -.++..+|.+.+.++--..-+...-.....++.+...|.+++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~--- 174 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF--- 174 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh---
Confidence 34568999998 76 55444433321 0 1 127999998887654433322221101112344444554443
Q ss_pred CCcccEEEecccccCccc-------------HHHHHHHHHhcccCCCEEEEEe
Q 025144 139 DCFFDAITMGYGLRNVVD-------------KRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 139 ~~~~D~v~~~~~l~~~~~-------------~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
...|+|++......-+. .....+.+.+.-.|+|.++++.
T Consensus 175 -kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 175 -QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred -CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 34799998776543332 1223344444346788887654
No 495
>PRK05855 short chain dehydrogenase; Validated
Probab=67.13 E-value=58 Score=29.06 Aligned_cols=78 Identities=10% Similarity=0.022 Sum_probs=50.4
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------CC
Q 025144 70 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------FS 138 (257)
Q Consensus 70 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 138 (257)
+.++|=+|+ +|.++..+++.+ ..+.+|..++.+...++...+.+...+ .++.++..|+.+.. -.
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG----AVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456776665 666666665554 236689999998876665555443322 46788999998742 01
Q ss_pred CCcccEEEeccccc
Q 025144 139 DCFFDAITMGYGLR 152 (257)
Q Consensus 139 ~~~~D~v~~~~~l~ 152 (257)
.+..|+++.+....
T Consensus 390 ~g~id~lv~~Ag~~ 403 (582)
T PRK05855 390 HGVPDIVVNNAGIG 403 (582)
T ss_pred cCCCcEEEECCccC
Confidence 24689999876553
No 496
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=67.03 E-value=40 Score=31.59 Aligned_cols=98 Identities=15% Similarity=0.016 Sum_probs=58.9
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhc--------------cCCCeeEEEccCCCC
Q 025144 71 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--------------CYKNIEWVEGDALDL 135 (257)
Q Consensus 71 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~d~~~~ 135 (257)
.+|--||+|+ |.-...+... .+.+|+.+|.+++.++.+.+++...-.. ...+++.. .|...+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD--KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh--CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh
Confidence 4799999986 4443333333 3789999999999999877665421100 00122221 222221
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEE
Q 025144 136 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 176 (257)
Q Consensus 136 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 176 (257)
...|+|+= .+...++-..+++.++-++++|+..|.-
T Consensus 413 ----~~aDlViE-Av~E~l~~K~~vf~~l~~~~~~~~ilas 448 (737)
T TIGR02441 413 ----KNADMVIE-AVFEDLSLKHKVIKEVEAVVPPHCIIAS 448 (737)
T ss_pred ----ccCCeehh-hccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 34677752 2444444467788888888888877653
No 497
>PTZ00117 malate dehydrogenase; Provisional
Probab=67.03 E-value=72 Score=26.39 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=28.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCceEEEEeCChhHHH
Q 025144 69 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLS 108 (257)
Q Consensus 69 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~ 108 (257)
+..+|.=+|+|. |.....++... ...++..+|++++..+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-~~~~l~L~Di~~~~~~ 43 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-NLGDVVLYDVIKGVPQ 43 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-CCCeEEEEECCCccch
Confidence 345899999998 77766666553 2268999999886543
No 498
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=66.93 E-value=69 Score=26.16 Aligned_cols=92 Identities=14% Similarity=0.106 Sum_probs=51.8
Q ss_pred CCeEEEe--cCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCC-----C-CCCC
Q 025144 70 GDNVLDV--CCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P-FSDC 140 (257)
Q Consensus 70 ~~~vLdi--G~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~ 140 (257)
+.+++=+ |+| .|..+..+++.. +.++++++.+++-.+.+++. + --.++..+-.++ . .+..
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~~----g-----~~~~i~~~~~~~~~~v~~~~~~~ 211 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKKI----G-----AEYVLNSSDPDFLEDLKELIAKL 211 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C-----CcEEEECCCccHHHHHHHHhCCC
Confidence 3344443 433 466777777774 66899999888777776542 1 112222221111 0 1224
Q ss_pred cccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEee
Q 025144 141 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 179 (257)
Q Consensus 141 ~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 179 (257)
.+|+++-.-. ........+.++++|.++....
T Consensus 212 ~~d~vid~~g-------~~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 212 NATIFFDAVG-------GGLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred CCcEEEECCC-------cHHHHHHHHhhCCCCEEEEEEe
Confidence 5898884322 1223445677899999877653
No 499
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=66.73 E-value=72 Score=26.29 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=58.4
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccC-CCC-----CC
Q 025144 65 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDL-----PF 137 (257)
Q Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~-----~~ 137 (257)
....++.+||=.|+| .|..+..+++.. +.++++++.+++..+.+++ + + --.++...- .+. ..
T Consensus 161 ~~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~-~---g-----~~~~i~~~~~~~~~~~~~~~ 229 (345)
T cd08260 161 ARVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE-L---G-----AVATVNASEVEDVAAAVRDL 229 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH-h---C-----CCEEEccccchhHHHHHHHH
Confidence 345677888888865 356667777764 6789999988887777643 2 1 011221111 111 01
Q ss_pred CCCcccEEEecccccCcccHHHHHHHHHhcccCCCEEEEEe
Q 025144 138 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 178 (257)
Q Consensus 138 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 178 (257)
..+.+|+++..-. -...+....+.|+++|.++...
T Consensus 230 ~~~~~d~vi~~~g------~~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 230 TGGGAHVSVDALG------IPETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred hCCCCCEEEEcCC------CHHHHHHHHHHhhcCCEEEEeC
Confidence 1126898875321 1345677888899999987654
No 500
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=66.69 E-value=42 Score=26.27 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=49.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCceEEEEeCChhHHHHHHhhhhhhhhccCCCeeEEEccCCCCC----------C
Q 025144 69 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 137 (257)
Q Consensus 69 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~~----------~ 137 (257)
.+.++|-.|+ +|..+..+++.+ ..+.+++.++.+++.++...+.++..+ .++.++.+|+.+.. .
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG----GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHHHHHHHH
Confidence 3567887775 555555555443 236799999998876665555443322 46788899987642 0
Q ss_pred CCCcccEEEecccc
Q 025144 138 SDCFFDAITMGYGL 151 (257)
Q Consensus 138 ~~~~~D~v~~~~~l 151 (257)
..+..|.++.+...
T Consensus 85 ~~~~id~vi~~ag~ 98 (256)
T PRK06124 85 EHGRLDILVNNVGA 98 (256)
T ss_pred hcCCCCEEEECCCC
Confidence 12457888876553
Done!