BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025148
         (257 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
           Methyltransferase (Np_349143.1) From Clostridium
           Acetobutylicum At 2.00 A Resolution
 pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
           Methyltransferase (Np_349143.1) From Clostridium
           Acetobutylicum At 2.00 A Resolution
          Length = 209

 Score = 35.4 bits (80), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 12/109 (11%)

Query: 148 VIEGDFHRQPFDDET--FDFEFSNVFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKR 203
           + +GD  + PF DE+  F + +  +F H    D  + + EI+R LKPGG+  ++  L+ +
Sbjct: 75  ISKGDIRKLPFKDESXSFVYSYGTIF-HXRKNDVKEAIDEIKRVLKPGGLACINF-LTTK 132

Query: 204 ADKYSANDLFSVKPLVKLFKRSE-----MVRVRKVDGFGLDTEVVFRKN 247
            ++Y+  +       ++L +R E      V + + D +  D +V+F+++
Sbjct: 133 DERYNKGEKIGEGEFLQL-ERGEKVIHSYVSLEEADKYFKDXKVLFKED 180


>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
 pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
          Length = 276

 Score = 31.2 bits (69), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 157 PFDDETFDFEF-SNVFDHALYPDKFVMEIERTLKPGGV 193
           PF+D +FD  F   V +H   P++ +  +++ LKPGG 
Sbjct: 100 PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGT 137


>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
          Length = 260

 Score = 30.8 bits (68), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 149 IEGDFHRQPFDDETFDFEFSNVFDHAL-YPDKFVMEIERTLKPGGVCVL 196
           ++GD  + PF DE F      +  H    P  FV E  R LK GG  +L
Sbjct: 90  VQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL 138


>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
           Thuringiensis
          Length = 242

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 14/101 (13%)

Query: 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPL-VIEGDFHRQPF 158
           E++ L +G   G     L R G   +VG+D+              P L  I+GD    PF
Sbjct: 54  EAEVLDVGCGDGYGTYKLSRTGYK-AVGVDISEVXIQKGKERGEGPDLSFIKGDLSSLPF 112

Query: 159 DDETFD-FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198
           ++E F+     N  +    P + + EI+R LK  G   + +
Sbjct: 113 ENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDGYACIAI 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,927,609
Number of Sequences: 62578
Number of extensions: 212272
Number of successful extensions: 452
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 7
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)