Query 025148
Match_columns 257
No_of_seqs 425 out of 2579
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.8 4.1E-20 8.9E-25 154.1 11.5 132 107-238 48-229 (238)
2 PLN02396 hexaprenyldihydroxybe 99.8 2.5E-19 5.4E-24 156.7 13.4 123 109-232 130-287 (322)
3 PF01209 Ubie_methyltran: ubiE 99.8 2.3E-19 4.9E-24 150.6 4.9 91 108-198 45-153 (233)
4 PLN02233 ubiquinone biosynthes 99.8 2.9E-18 6.3E-23 146.6 11.5 131 108-238 71-253 (261)
5 PRK14103 trans-aconitate 2-met 99.8 8.2E-18 1.8E-22 143.5 12.7 146 83-229 2-179 (255)
6 PLN02244 tocopherol O-methyltr 99.8 7.4E-18 1.6E-22 149.4 12.5 125 109-233 117-277 (340)
7 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.6E-18 3.4E-23 142.6 6.3 119 109-228 58-209 (243)
8 PF08241 Methyltransf_11: Meth 99.7 8.8E-19 1.9E-23 126.0 4.2 82 115-196 1-95 (95)
9 PF13489 Methyltransf_23: Meth 99.7 8.3E-19 1.8E-23 138.5 4.3 123 108-231 20-160 (161)
10 PRK10258 biotin biosynthesis p 99.7 9.2E-17 2E-21 136.6 13.6 119 109-228 41-181 (251)
11 TIGR02752 MenG_heptapren 2-hep 99.7 5.6E-17 1.2E-21 136.2 11.1 140 107-246 42-231 (231)
12 PRK15068 tRNA mo(5)U34 methylt 99.7 6.3E-17 1.4E-21 142.2 10.8 125 109-234 121-274 (322)
13 PRK11036 putative S-adenosyl-L 99.7 9.4E-17 2E-21 137.0 11.6 122 109-231 43-204 (255)
14 PTZ00098 phosphoethanolamine N 99.7 7.8E-17 1.7E-21 138.0 10.6 136 99-234 41-202 (263)
15 TIGR00452 methyltransferase, p 99.7 7.7E-17 1.7E-21 140.5 10.8 129 108-237 119-276 (314)
16 PF07021 MetW: Methionine bios 99.7 2.2E-16 4.8E-21 126.4 10.2 126 106-234 9-167 (193)
17 PLN02336 phosphoethanolamine N 99.7 2.4E-16 5.1E-21 145.9 10.0 126 107-232 263-412 (475)
18 PRK01683 trans-aconitate 2-met 99.7 2.6E-16 5.7E-21 134.3 9.3 117 83-200 4-132 (258)
19 KOG1540 Ubiquinone biosynthesi 99.7 3.3E-17 7.1E-22 135.0 3.0 90 109-198 99-214 (296)
20 PRK05785 hypothetical protein; 99.7 5.3E-16 1.1E-20 130.0 10.2 82 110-191 51-140 (226)
21 PF08003 Methyltransf_9: Prote 99.6 4.9E-16 1.1E-20 132.2 8.9 125 109-234 114-267 (315)
22 PRK11207 tellurite resistance 99.6 1.6E-15 3.5E-20 124.5 11.3 123 109-235 29-171 (197)
23 KOG1270 Methyltransferases [Co 99.6 4.9E-16 1.1E-20 128.9 5.2 114 111-228 90-243 (282)
24 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.6E-15 3.5E-20 133.4 8.8 125 109-233 112-255 (340)
25 TIGR00477 tehB tellurite resis 99.6 4.5E-15 9.7E-20 121.6 10.5 121 109-233 29-168 (195)
26 smart00828 PKS_MT Methyltransf 99.6 5.5E-15 1.2E-19 123.5 11.2 122 112-234 1-144 (224)
27 PRK00107 gidB 16S rRNA methylt 99.6 1.7E-14 3.7E-19 117.1 13.4 126 105-246 40-186 (187)
28 TIGR02072 BioC biotin biosynth 99.6 8.7E-15 1.9E-19 122.9 10.9 117 109-225 33-168 (240)
29 PF13847 Methyltransf_31: Meth 99.6 1.3E-15 2.8E-20 119.9 4.9 91 109-200 2-112 (152)
30 COG4106 Tam Trans-aconitate me 99.6 8.1E-15 1.8E-19 118.3 8.8 118 83-201 3-132 (257)
31 PRK08317 hypothetical protein; 99.6 2.4E-14 5.2E-19 120.1 12.1 126 105-230 14-172 (241)
32 PRK11873 arsM arsenite S-adeno 99.6 8E-15 1.7E-19 126.2 9.3 125 108-232 75-228 (272)
33 TIGR03840 TMPT_Se_Te thiopurin 99.6 2.8E-14 6E-19 118.3 12.1 123 109-232 33-187 (213)
34 PRK12335 tellurite resistance 99.6 1.7E-14 3.7E-19 125.1 10.9 120 110-231 120-258 (287)
35 PF03848 TehB: Tellurite resis 99.6 7.5E-15 1.6E-19 118.8 8.0 123 109-233 29-170 (192)
36 PRK00216 ubiE ubiquinone/menaq 99.6 3.3E-14 7.1E-19 119.5 12.2 139 108-246 49-238 (239)
37 PF12847 Methyltransf_18: Meth 99.6 1.8E-15 3.9E-20 112.5 4.0 88 110-198 1-111 (112)
38 PRK11188 rrmJ 23S rRNA methylt 99.5 2.2E-14 4.8E-19 118.7 8.8 94 107-200 48-167 (209)
39 PF02353 CMAS: Mycolic acid cy 99.5 8.6E-15 1.9E-19 125.6 5.3 130 98-230 50-213 (273)
40 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 6.4E-14 1.4E-18 116.5 10.5 137 109-245 38-222 (223)
41 COG2230 Cfa Cyclopropane fatty 99.5 1.4E-13 3E-18 117.1 12.0 129 100-231 62-220 (283)
42 TIGR00138 gidB 16S rRNA methyl 99.5 2.5E-13 5.5E-18 109.9 12.5 109 110-234 42-169 (181)
43 KOG4300 Predicted methyltransf 99.5 2.5E-14 5.3E-19 114.7 6.2 87 112-198 78-182 (252)
44 PF08242 Methyltransf_12: Meth 99.5 6.5E-15 1.4E-19 107.3 2.1 80 115-194 1-99 (99)
45 PRK13255 thiopurine S-methyltr 99.5 2.8E-13 6E-18 112.8 12.1 125 108-233 35-191 (218)
46 TIGR00740 methyltransferase, p 99.5 8.5E-14 1.8E-18 117.6 8.9 124 107-232 50-225 (239)
47 PRK04266 fibrillarin; Provisio 99.5 4.4E-13 9.6E-18 112.0 12.1 122 106-234 68-210 (226)
48 PRK15451 tRNA cmo(5)U34 methyl 99.5 9.2E-14 2E-18 118.0 8.2 89 108-198 54-164 (247)
49 TIGR02081 metW methionine bios 99.5 3.6E-13 7.7E-18 110.3 11.3 123 108-233 11-166 (194)
50 PTZ00146 fibrillarin; Provisio 99.5 2E-13 4.3E-18 116.9 8.6 150 87-239 109-278 (293)
51 PLN02336 phosphoethanolamine N 99.5 3.1E-13 6.8E-18 125.1 10.3 121 109-230 36-178 (475)
52 PRK11088 rrmA 23S rRNA methylt 99.5 2.1E-13 4.6E-18 117.4 8.5 94 103-202 78-185 (272)
53 TIGR00537 hemK_rel_arch HemK-r 99.5 6.1E-13 1.3E-17 107.5 10.5 122 109-244 18-176 (179)
54 PRK11705 cyclopropane fatty ac 99.5 2E-13 4.3E-18 122.7 8.4 98 99-199 156-268 (383)
55 TIGR03587 Pse_Me-ase pseudamin 99.4 3.9E-13 8.4E-18 110.9 9.0 88 108-198 41-142 (204)
56 smart00138 MeTrc Methyltransfe 99.4 2.9E-13 6.3E-18 115.9 7.9 90 109-198 98-242 (264)
57 PRK05134 bifunctional 3-demeth 99.4 1.1E-12 2.3E-17 110.3 11.0 125 108-233 46-204 (233)
58 TIGR01983 UbiG ubiquinone bios 99.4 2.8E-12 6.1E-17 107.0 12.4 122 110-232 45-201 (224)
59 PRK00121 trmB tRNA (guanine-N( 99.4 1.8E-13 4E-18 112.7 5.0 110 110-230 40-177 (202)
60 PRK06202 hypothetical protein; 99.4 1.4E-12 3E-17 109.7 9.9 117 109-228 59-216 (232)
61 COG2264 PrmA Ribosomal protein 99.4 1.2E-12 2.7E-17 112.2 9.6 128 105-246 157-299 (300)
62 PLN03075 nicotianamine synthas 99.4 4.3E-12 9.4E-17 109.1 12.8 132 109-249 122-277 (296)
63 KOG1271 Methyltransferases [Ge 99.4 4.8E-12 1E-16 99.7 11.1 112 111-234 68-205 (227)
64 PF13649 Methyltransf_25: Meth 99.4 8.1E-14 1.8E-18 102.0 1.0 79 114-192 1-101 (101)
65 PRK06922 hypothetical protein; 99.4 4.5E-13 9.8E-18 125.1 6.2 91 109-199 417-538 (677)
66 TIGR02469 CbiT precorrin-6Y C5 99.4 3E-12 6.6E-17 96.5 8.2 89 107-198 16-122 (124)
67 TIGR00438 rrmJ cell division p 99.4 5.2E-12 1.1E-16 102.8 10.1 95 105-199 27-147 (188)
68 PF06325 PrmA: Ribosomal prote 99.3 4.5E-12 9.7E-17 109.6 8.9 123 108-247 159-295 (295)
69 PRK14967 putative methyltransf 99.3 6E-12 1.3E-16 105.3 9.2 91 108-199 34-160 (223)
70 PRK00517 prmA ribosomal protei 99.3 6E-12 1.3E-16 107.1 8.9 125 108-246 117-249 (250)
71 TIGR02021 BchM-ChlM magnesium 99.3 7.7E-12 1.7E-16 104.2 9.4 121 109-233 54-205 (219)
72 PRK13944 protein-L-isoaspartat 99.3 6.6E-12 1.4E-16 103.7 7.8 85 108-198 70-173 (205)
73 PRK14968 putative methyltransf 99.3 2E-11 4.3E-16 98.9 10.1 110 109-231 22-170 (188)
74 TIGR00406 prmA ribosomal prote 99.3 6.9E-12 1.5E-16 108.8 7.6 103 108-225 157-275 (288)
75 PRK08287 cobalt-precorrin-6Y C 99.3 1.5E-11 3.2E-16 100.1 9.1 107 108-230 29-152 (187)
76 TIGR02716 C20_methyl_CrtF C-20 99.3 2.3E-11 4.9E-16 106.5 10.7 124 107-232 146-304 (306)
77 TIGR00091 tRNA (guanine-N(7)-) 99.3 2.6E-12 5.6E-17 105.2 4.1 91 110-200 16-134 (194)
78 PF05148 Methyltransf_8: Hypot 99.3 2.4E-11 5.2E-16 98.4 9.3 129 109-249 71-200 (219)
79 PF05175 MTS: Methyltransferas 99.3 2.3E-11 4.9E-16 97.5 9.2 89 110-199 31-141 (170)
80 PRK00377 cbiT cobalt-precorrin 99.3 1.9E-11 4.1E-16 100.4 8.5 110 105-227 35-163 (198)
81 PF13659 Methyltransf_26: Meth 99.3 1.3E-12 2.7E-17 97.9 1.3 89 111-199 1-116 (117)
82 PRK13942 protein-L-isoaspartat 99.3 1.4E-11 3.1E-16 102.2 7.7 87 106-198 72-176 (212)
83 PRK09489 rsmC 16S ribosomal RN 99.2 4.2E-11 9.2E-16 106.0 10.6 114 110-237 196-330 (342)
84 TIGR00536 hemK_fam HemK family 99.2 8.2E-11 1.8E-15 101.9 11.8 121 112-245 116-281 (284)
85 TIGR01177 conserved hypothetic 99.2 2.7E-11 5.9E-16 107.1 8.9 108 105-227 177-309 (329)
86 TIGR03534 RF_mod_PrmC protein- 99.2 3E-11 6.5E-16 102.4 8.8 113 109-234 86-241 (251)
87 PRK07580 Mg-protoporphyrin IX 99.2 1.3E-10 2.8E-15 97.3 12.5 120 109-233 62-213 (230)
88 PRK13256 thiopurine S-methyltr 99.2 1.6E-10 3.5E-15 96.2 12.5 126 105-232 38-197 (226)
89 COG4976 Predicted methyltransf 99.2 1.8E-11 4E-16 99.8 6.2 136 97-233 112-264 (287)
90 PF05401 NodS: Nodulation prot 99.2 1.6E-11 3.4E-16 98.8 5.6 111 111-225 44-171 (201)
91 PRK14966 unknown domain/N5-glu 99.2 5.8E-11 1.3E-15 106.5 9.6 126 109-246 250-418 (423)
92 PRK14121 tRNA (guanine-N(7)-)- 99.2 2.4E-11 5.3E-16 108.2 7.0 87 109-199 121-236 (390)
93 TIGR03533 L3_gln_methyl protei 99.2 1.1E-10 2.4E-15 101.1 10.1 111 110-234 121-274 (284)
94 PRK09328 N5-glutamine S-adenos 99.2 2E-10 4.4E-15 98.8 11.1 113 108-233 106-261 (275)
95 TIGR00080 pimt protein-L-isoas 99.2 5.7E-11 1.2E-15 98.8 7.2 86 107-198 74-177 (215)
96 KOG3045 Predicted RNA methylas 99.2 1.3E-10 2.9E-15 96.3 9.0 126 109-248 179-305 (325)
97 PLN02585 magnesium protoporphy 99.2 7.5E-11 1.6E-15 103.2 7.9 117 110-231 144-296 (315)
98 COG4123 Predicted O-methyltran 99.2 1.5E-10 3.3E-15 96.9 8.8 108 109-228 43-188 (248)
99 KOG2361 Predicted methyltransf 99.1 6.4E-11 1.4E-15 97.4 6.1 133 113-248 74-248 (264)
100 PRK15001 SAM-dependent 23S rib 99.1 6.5E-11 1.4E-15 105.8 6.3 87 111-198 229-340 (378)
101 PRK11805 N5-glutamine S-adenos 99.1 3.2E-10 6.9E-15 99.2 10.5 109 112-234 135-286 (307)
102 PRK00312 pcm protein-L-isoaspa 99.1 2.8E-10 6E-15 94.4 8.0 86 107-199 75-176 (212)
103 cd02440 AdoMet_MTases S-adenos 99.1 1.1E-10 2.3E-15 83.9 4.9 85 113-197 1-103 (107)
104 KOG3010 Methyltransferase [Gen 99.1 2.8E-10 6E-15 93.7 7.8 85 113-198 36-137 (261)
105 PF05219 DREV: DREV methyltran 99.1 2.6E-10 5.6E-15 95.4 7.6 88 110-198 94-188 (265)
106 PF05724 TPMT: Thiopurine S-me 99.1 2E-10 4.3E-15 95.5 6.0 125 99-224 26-181 (218)
107 PRK07402 precorrin-6B methylas 99.1 5.2E-10 1.1E-14 91.7 8.2 90 108-200 38-144 (196)
108 PF06080 DUF938: Protein of un 99.1 3.2E-09 7E-14 86.4 12.1 138 109-246 23-204 (204)
109 PRK01544 bifunctional N5-gluta 99.0 6.1E-10 1.3E-14 103.6 8.6 109 110-231 138-290 (506)
110 PLN02232 ubiquinone biosynthes 99.0 2.4E-10 5.2E-15 90.7 5.0 94 145-238 27-152 (160)
111 PF03291 Pox_MCEL: mRNA cappin 99.0 3.4E-10 7.4E-15 99.7 6.1 92 110-201 62-189 (331)
112 PHA03411 putative methyltransf 99.0 4.6E-10 9.9E-15 95.4 6.5 113 110-228 64-208 (279)
113 TIGR03438 probable methyltrans 99.0 1.1E-09 2.5E-14 95.6 9.1 92 109-200 62-179 (301)
114 COG2890 HemK Methylase of poly 99.0 1.8E-09 3.9E-14 93.2 9.6 120 113-246 113-276 (280)
115 COG2242 CobL Precorrin-6B meth 99.0 1.8E-09 3.9E-14 86.3 8.2 108 105-227 29-153 (187)
116 PF11968 DUF3321: Putative met 99.0 3.2E-09 7E-14 86.6 9.7 131 112-249 53-195 (219)
117 COG2521 Predicted archaeal met 99.0 3.1E-09 6.7E-14 87.1 9.5 126 108-237 132-281 (287)
118 TIGR03704 PrmC_rel_meth putati 99.0 1.6E-09 3.5E-14 92.1 8.0 106 111-228 87-234 (251)
119 COG2519 GCD14 tRNA(1-methylade 99.0 9.8E-10 2.1E-14 91.5 6.2 94 104-202 88-199 (256)
120 KOG1541 Predicted protein carb 99.0 1.1E-09 2.3E-14 89.1 6.3 88 110-198 50-160 (270)
121 KOG1975 mRNA cap methyltransfe 99.0 1.1E-09 2.4E-14 93.7 6.0 107 96-202 103-241 (389)
122 PRK04457 spermidine synthase; 99.0 6.2E-10 1.3E-14 95.3 4.4 91 109-199 65-178 (262)
123 smart00650 rADc Ribosomal RNA 98.9 2.8E-09 6.1E-14 85.2 7.5 92 107-201 10-116 (169)
124 COG2813 RsmC 16S RNA G1207 met 98.9 5.6E-09 1.2E-13 89.4 9.6 115 109-237 157-293 (300)
125 PRK14901 16S rRNA methyltransf 98.9 1.8E-09 3.8E-14 99.0 6.9 93 108-200 250-386 (434)
126 PRK00811 spermidine synthase; 98.9 9.3E-10 2E-14 95.2 4.6 91 109-199 75-192 (283)
127 TIGR00563 rsmB ribosomal RNA s 98.9 2.6E-09 5.5E-14 97.7 7.7 94 108-201 236-371 (426)
128 PRK13943 protein-L-isoaspartat 98.9 3.1E-09 6.6E-14 93.3 7.8 86 107-198 77-180 (322)
129 KOG1499 Protein arginine N-met 98.9 9E-10 2E-14 95.5 4.4 91 106-196 56-165 (346)
130 KOG2940 Predicted methyltransf 98.9 2E-09 4.3E-14 88.0 5.9 90 109-198 71-174 (325)
131 PF01135 PCMT: Protein-L-isoas 98.9 5.4E-10 1.2E-14 92.3 2.5 89 105-199 67-173 (209)
132 COG2518 Pcm Protein-L-isoaspar 98.9 1.9E-09 4.1E-14 87.9 5.5 91 102-199 64-170 (209)
133 PRK10901 16S rRNA methyltransf 98.9 3.8E-09 8.2E-14 96.6 7.9 93 108-200 242-374 (427)
134 PRK14904 16S rRNA methyltransf 98.9 3.1E-09 6.7E-14 97.7 7.1 92 109-201 249-380 (445)
135 PRK14903 16S rRNA methyltransf 98.9 3E-09 6.5E-14 97.2 5.6 93 108-200 235-368 (431)
136 PF08704 GCD14: tRNA methyltra 98.9 3.7E-09 8.1E-14 89.2 5.6 117 102-233 32-170 (247)
137 TIGR00446 nop2p NOL1/NOP2/sun 98.8 4.1E-09 9E-14 90.4 5.8 93 108-200 69-201 (264)
138 PHA03412 putative methyltransf 98.8 6.8E-09 1.5E-13 86.4 6.6 115 110-228 49-196 (241)
139 KOG1500 Protein arginine N-met 98.8 1.9E-09 4E-14 92.7 2.7 89 109-198 176-282 (517)
140 PF03141 Methyltransf_29: Puta 98.8 3.8E-09 8.3E-14 95.6 4.6 107 91-199 97-220 (506)
141 PRK10611 chemotaxis methyltran 98.8 1.2E-08 2.5E-13 88.1 7.0 87 112-198 117-262 (287)
142 KOG2899 Predicted methyltransf 98.8 5.4E-09 1.2E-13 86.2 4.3 138 109-249 57-279 (288)
143 PRK14902 16S rRNA methyltransf 98.8 1.1E-08 2.5E-13 94.0 6.0 92 108-200 248-381 (444)
144 PF01739 CheR: CheR methyltran 98.7 6E-09 1.3E-13 85.2 3.4 89 110-198 31-175 (196)
145 PRK01581 speE spermidine synth 98.7 7.9E-09 1.7E-13 91.2 4.1 90 109-198 149-268 (374)
146 PRK03612 spermidine synthase; 98.7 2.4E-08 5.1E-13 93.5 6.2 112 109-227 296-437 (521)
147 PLN02781 Probable caffeoyl-CoA 98.7 2.1E-08 4.5E-13 84.5 5.1 88 109-198 67-178 (234)
148 PLN02366 spermidine synthase 98.7 1.6E-08 3.5E-13 88.2 4.5 91 108-198 89-206 (308)
149 KOG1331 Predicted methyltransf 98.7 6.8E-08 1.5E-12 81.7 7.8 88 109-199 44-144 (293)
150 PF05891 Methyltransf_PK: AdoM 98.7 1.1E-08 2.3E-13 83.9 2.6 128 110-237 55-206 (218)
151 PRK13168 rumA 23S rRNA m(5)U19 98.7 1E-07 2.3E-12 87.6 9.4 86 108-198 295-400 (443)
152 PF02390 Methyltransf_4: Putat 98.7 1.3E-08 2.9E-13 83.3 2.8 89 111-199 18-134 (195)
153 KOG1269 SAM-dependent methyltr 98.7 1.6E-08 3.4E-13 89.9 3.4 92 108-199 108-216 (364)
154 PLN02672 methionine S-methyltr 98.6 4.2E-08 9.2E-13 97.4 6.6 109 111-231 119-300 (1082)
155 PRK03522 rumB 23S rRNA methylu 98.6 1.3E-07 2.7E-12 83.3 9.0 86 110-198 173-274 (315)
156 PF00891 Methyltransf_2: O-met 98.6 8.6E-08 1.9E-12 81.0 7.5 92 105-199 95-200 (241)
157 PRK11783 rlmL 23S rRNA m(2)G24 98.6 2.6E-08 5.7E-13 96.3 4.7 90 110-199 538-657 (702)
158 TIGR00417 speE spermidine synt 98.6 3.6E-08 7.8E-13 84.8 5.0 90 109-198 71-186 (270)
159 PF05185 PRMT5: PRMT5 arginine 98.6 5E-08 1.1E-12 89.3 5.1 84 111-195 187-294 (448)
160 PRK15128 23S rRNA m(5)C1962 me 98.6 4.2E-08 9E-13 88.6 4.1 91 109-199 219-340 (396)
161 COG0293 FtsJ 23S rRNA methylas 98.6 5.4E-07 1.2E-11 73.5 10.0 94 106-199 41-160 (205)
162 PRK10909 rsmD 16S rRNA m(2)G96 98.6 5.4E-08 1.2E-12 79.8 4.3 89 110-199 53-160 (199)
163 COG1352 CheR Methylase of chem 98.5 2.9E-07 6.2E-12 78.6 7.9 88 111-198 97-241 (268)
164 PF07942 N2227: N2227-like pro 98.5 7.6E-07 1.6E-11 75.9 10.3 151 83-234 25-242 (270)
165 KOG2904 Predicted methyltransf 98.5 7.2E-07 1.6E-11 75.1 9.8 91 109-199 147-286 (328)
166 PF01728 FtsJ: FtsJ-like methy 98.5 7.9E-08 1.7E-12 77.6 2.4 90 110-199 23-140 (181)
167 TIGR00478 tly hemolysin TlyA f 98.5 6.2E-07 1.3E-11 75.0 7.6 82 109-198 74-171 (228)
168 COG0220 Predicted S-adenosylme 98.5 1.7E-07 3.6E-12 78.3 4.2 84 112-199 50-165 (227)
169 PF10294 Methyltransf_16: Puta 98.4 4.1E-07 8.9E-12 73.1 6.0 92 108-199 43-157 (173)
170 KOG1661 Protein-L-isoaspartate 98.4 3.4E-07 7.5E-12 74.1 5.0 97 95-198 69-193 (237)
171 PRK00274 ksgA 16S ribosomal RN 98.4 2.6E-07 5.7E-12 79.6 4.7 64 105-169 37-112 (272)
172 COG1041 Predicted DNA modifica 98.4 6.9E-07 1.5E-11 78.1 7.0 97 102-199 189-311 (347)
173 KOG3191 Predicted N6-DNA-methy 98.4 6.5E-06 1.4E-10 65.4 11.4 106 111-228 44-187 (209)
174 PRK14896 ksgA 16S ribosomal RN 98.4 4.5E-07 9.7E-12 77.5 5.1 67 105-174 24-103 (258)
175 TIGR00479 rumA 23S rRNA (uraci 98.3 6.1E-07 1.3E-11 82.3 5.0 88 108-198 290-396 (431)
176 TIGR00755 ksgA dimethyladenosi 98.3 1.4E-06 3.1E-11 74.2 6.8 70 99-171 18-103 (253)
177 COG4627 Uncharacterized protei 98.3 2.2E-06 4.8E-11 66.2 6.1 83 113-202 5-90 (185)
178 TIGR02085 meth_trns_rumB 23S r 98.3 2.8E-06 6.1E-11 76.5 7.9 85 110-198 233-334 (374)
179 PLN02476 O-methyltransferase 98.2 1.3E-06 2.9E-11 74.9 5.1 87 109-197 117-227 (278)
180 COG2263 Predicted RNA methylas 98.2 1.6E-06 3.5E-11 69.4 5.1 58 109-169 44-115 (198)
181 PRK11760 putative 23S rRNA C24 98.2 2.8E-06 6.1E-11 74.3 7.0 88 107-198 208-305 (357)
182 PF01596 Methyltransf_3: O-met 98.2 5.3E-07 1.2E-11 74.3 2.2 87 110-198 45-155 (205)
183 KOG3987 Uncharacterized conser 98.2 8.2E-07 1.8E-11 71.8 3.2 89 109-198 111-207 (288)
184 PLN02823 spermine synthase 98.2 1.3E-06 2.9E-11 77.1 4.8 90 109-198 102-220 (336)
185 TIGR00095 RNA methyltransferas 98.2 1.6E-06 3.4E-11 70.7 4.9 89 110-199 49-160 (189)
186 PF01170 UPF0020: Putative RNA 98.2 4.8E-06 1.1E-10 67.2 7.0 115 105-235 23-172 (179)
187 PRK04148 hypothetical protein; 98.2 2.4E-06 5.2E-11 65.2 4.7 83 109-197 15-108 (134)
188 PRK01544 bifunctional N5-gluta 98.2 1.4E-06 3.1E-11 81.2 3.9 87 109-199 346-463 (506)
189 PRK11727 23S rRNA mA1618 methy 98.1 1.8E-06 3.8E-11 75.8 3.9 124 110-233 114-291 (321)
190 KOG2352 Predicted spermine/spe 98.1 2.2E-06 4.7E-11 77.7 4.5 90 109-198 46-161 (482)
191 PTZ00338 dimethyladenosine tra 98.1 2.1E-06 4.5E-11 74.7 4.1 74 99-175 25-114 (294)
192 KOG4589 Cell division protein 98.1 1.2E-05 2.7E-10 64.1 8.0 98 105-202 64-188 (232)
193 COG4122 Predicted O-methyltran 98.1 3.2E-06 7E-11 69.9 4.7 87 109-198 58-166 (219)
194 PF03269 DUF268: Caenorhabditi 98.1 2.4E-05 5.1E-10 61.0 8.9 120 111-230 2-143 (177)
195 KOG1709 Guanidinoacetate methy 98.1 6.2E-06 1.4E-10 67.2 5.7 89 109-197 100-205 (271)
196 PRK11933 yebU rRNA (cytosine-C 98.1 7E-06 1.5E-10 75.7 6.0 93 108-200 111-244 (470)
197 PF01269 Fibrillarin: Fibrilla 98.0 3.8E-06 8.3E-11 69.1 3.3 154 87-243 50-223 (229)
198 COG3963 Phospholipid N-methylt 98.0 1.1E-05 2.4E-10 63.3 5.7 90 109-198 47-156 (194)
199 COG0500 SmtA SAM-dependent met 98.0 1.7E-05 3.6E-10 60.4 6.5 86 114-200 52-157 (257)
200 PRK04338 N(2),N(2)-dimethylgua 98.0 4.8E-06 1E-10 75.0 3.9 85 111-198 58-158 (382)
201 PF02527 GidB: rRNA small subu 98.0 3.7E-06 8.1E-11 68.1 2.8 96 99-198 36-148 (184)
202 PF08123 DOT1: Histone methyla 98.0 1.9E-06 4.2E-11 70.9 1.1 95 102-196 34-156 (205)
203 COG0421 SpeE Spermidine syntha 98.0 1.3E-05 2.7E-10 69.2 6.0 86 112-198 78-190 (282)
204 PRK00536 speE spermidine synth 98.0 8.7E-06 1.9E-10 69.4 4.6 82 109-198 71-171 (262)
205 KOG3420 Predicted RNA methylas 98.0 1.9E-06 4.2E-11 65.8 0.4 61 109-169 47-121 (185)
206 PF12147 Methyltransf_20: Puta 98.0 0.00012 2.7E-09 62.5 11.2 134 110-243 135-308 (311)
207 KOG0820 Ribosomal RNA adenine 97.9 2E-05 4.3E-10 66.5 6.1 70 97-169 45-130 (315)
208 PLN02589 caffeoyl-CoA O-methyl 97.9 5.7E-06 1.2E-10 70.0 3.0 86 110-197 79-189 (247)
209 COG1092 Predicted SAM-dependen 97.9 1.4E-05 3.1E-10 71.7 5.2 89 111-199 218-337 (393)
210 KOG3178 Hydroxyindole-O-methyl 97.9 0.00013 2.7E-09 63.9 10.9 85 111-199 178-276 (342)
211 PF03602 Cons_hypoth95: Conser 97.9 2.4E-06 5.3E-11 69.2 -0.2 90 110-199 42-154 (183)
212 COG0030 KsgA Dimethyladenosine 97.9 1.5E-05 3.3E-10 67.5 4.6 72 97-169 17-102 (259)
213 PF02475 Met_10: Met-10+ like- 97.8 1.1E-05 2.4E-10 66.1 2.9 84 108-195 99-199 (200)
214 COG4076 Predicted RNA methylas 97.8 5.5E-05 1.2E-09 60.5 6.6 83 112-197 34-134 (252)
215 PF02384 N6_Mtase: N-6 DNA Met 97.8 1.8E-05 3.9E-10 69.4 4.1 93 108-200 44-185 (311)
216 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 3.8E-05 8.2E-10 65.2 5.4 125 110-234 56-239 (256)
217 TIGR02143 trmA_only tRNA (urac 97.8 5.7E-05 1.2E-09 67.5 6.6 82 112-198 199-311 (353)
218 PRK05031 tRNA (uracil-5-)-meth 97.8 6.6E-05 1.4E-09 67.3 6.8 82 111-198 207-320 (362)
219 PF03141 Methyltransf_29: Puta 97.7 0.00034 7.5E-09 64.0 10.7 130 86-232 344-489 (506)
220 COG4798 Predicted methyltransf 97.7 0.00033 7.1E-09 56.4 8.8 123 108-231 46-202 (238)
221 COG1889 NOP1 Fibrillarin-like 97.7 0.00026 5.7E-09 57.3 8.1 108 87-198 53-180 (231)
222 PF01564 Spermine_synth: Sperm 97.6 2.3E-05 4.9E-10 66.5 1.8 90 109-198 75-191 (246)
223 COG0357 GidB Predicted S-adeno 97.6 0.00016 3.5E-09 59.8 6.1 83 111-196 68-166 (215)
224 COG0742 N6-adenine-specific me 97.6 8.5E-05 1.8E-09 59.8 4.1 90 110-199 43-155 (187)
225 KOG2915 tRNA(1-methyladenosine 97.5 0.00035 7.7E-09 59.1 7.6 118 102-234 97-235 (314)
226 COG1189 Predicted rRNA methyla 97.5 0.00035 7.7E-09 58.1 7.5 88 107-198 76-178 (245)
227 TIGR03439 methyl_EasF probable 97.5 0.00059 1.3E-08 60.0 8.9 93 108-200 74-199 (319)
228 COG3897 Predicted methyltransf 97.5 0.00031 6.7E-09 56.7 6.3 85 108-196 77-176 (218)
229 PF13679 Methyltransf_32: Meth 97.5 0.00049 1.1E-08 53.2 7.1 53 92-144 6-64 (141)
230 TIGR02987 met_A_Alw26 type II 97.4 0.00027 5.9E-09 66.5 6.3 35 110-144 31-74 (524)
231 PF09243 Rsm22: Mitochondrial 97.4 0.0004 8.8E-09 59.9 6.8 99 96-198 19-139 (274)
232 KOG2798 Putative trehalase [Ca 97.4 0.00039 8.5E-09 59.9 6.5 150 83-233 119-336 (369)
233 KOG1663 O-methyltransferase [S 97.4 0.00027 5.8E-09 58.4 5.3 85 110-197 73-182 (237)
234 PRK00050 16S rRNA m(4)C1402 me 97.4 5.8E-05 1.3E-09 65.5 1.4 43 102-144 11-55 (296)
235 PF10672 Methyltrans_SAM: S-ad 97.4 4.4E-05 9.4E-10 66.0 0.1 91 109-199 122-239 (286)
236 TIGR00308 TRM1 tRNA(guanine-26 97.3 0.00012 2.6E-09 65.7 2.5 84 112-198 46-147 (374)
237 COG2520 Predicted methyltransf 97.2 0.00051 1.1E-08 60.6 5.4 89 108-199 186-290 (341)
238 PF04672 Methyltransf_19: S-ad 97.2 0.0016 3.4E-08 55.5 7.3 114 112-225 70-229 (267)
239 COG0144 Sun tRNA and rRNA cyto 97.1 0.0014 3E-08 58.6 7.0 93 108-200 154-290 (355)
240 PRK11783 rlmL 23S rRNA m(2)G24 97.1 0.0014 3E-08 63.8 7.2 91 109-199 189-348 (702)
241 PF00398 RrnaAD: Ribosomal RNA 97.1 0.00081 1.8E-08 57.6 4.9 86 98-186 18-119 (262)
242 PF03059 NAS: Nicotianamine sy 97.0 0.0081 1.8E-07 51.6 10.2 128 111-247 121-272 (276)
243 PF13578 Methyltransf_24: Meth 97.0 4.7E-05 1E-09 55.8 -3.2 83 115-197 1-104 (106)
244 PF07757 AdoMet_MTase: Predict 96.9 0.002 4.3E-08 46.9 4.9 48 96-144 43-91 (112)
245 KOG1099 SAM-dependent methyltr 96.8 0.0014 2.9E-08 54.3 3.6 88 111-198 42-163 (294)
246 KOG2920 Predicted methyltransf 96.7 0.0035 7.5E-08 53.6 5.5 110 88-198 95-234 (282)
247 KOG0822 Protein kinase inhibit 96.7 0.0096 2.1E-07 54.9 8.5 86 112-197 369-477 (649)
248 COG2265 TrmA SAM-dependent met 96.6 0.0044 9.5E-08 56.8 6.3 83 109-198 292-396 (432)
249 PF05958 tRNA_U5-meth_tr: tRNA 96.6 0.0041 8.8E-08 55.6 5.7 43 112-155 198-255 (352)
250 KOG1596 Fibrillarin and relate 96.6 0.0054 1.2E-07 51.2 5.7 92 104-199 150-262 (317)
251 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.5 0.0009 1.9E-08 58.0 0.6 93 108-200 83-221 (283)
252 PF04816 DUF633: Family of unk 96.4 0.0066 1.4E-07 50.1 5.4 105 114-233 1-123 (205)
253 PF04989 CmcI: Cephalosporin h 96.3 0.0071 1.5E-07 49.6 4.7 89 110-198 32-147 (206)
254 PF03492 Methyltransf_7: SAM d 96.2 0.027 5.9E-07 50.0 8.6 68 108-175 14-121 (334)
255 PLN02668 indole-3-acetate carb 96.1 0.15 3.4E-06 45.9 13.0 23 213-235 287-309 (386)
256 COG4262 Predicted spermidine s 96.0 0.0079 1.7E-07 53.1 4.0 90 109-198 288-407 (508)
257 KOG3201 Uncharacterized conser 95.9 0.0023 5E-08 50.2 0.4 92 110-201 29-143 (201)
258 COG5459 Predicted rRNA methyla 95.9 0.025 5.4E-07 49.9 6.4 89 110-199 113-226 (484)
259 TIGR01444 fkbM_fam methyltrans 95.7 0.011 2.4E-07 45.3 3.4 32 113-144 1-33 (143)
260 KOG2793 Putative N2,N2-dimethy 95.7 0.014 3E-07 49.3 4.3 93 110-202 86-203 (248)
261 COG0116 Predicted N6-adenine-s 95.5 0.031 6.8E-07 50.0 5.9 100 100-199 181-345 (381)
262 KOG1122 tRNA and rRNA cytosine 95.4 0.039 8.5E-07 49.7 6.1 91 109-200 240-373 (460)
263 KOG2187 tRNA uracil-5-methyltr 95.3 0.018 3.9E-07 53.0 3.7 48 96-144 368-416 (534)
264 PF09445 Methyltransf_15: RNA 95.2 0.013 2.9E-07 46.4 2.3 55 113-168 2-75 (163)
265 KOG3115 Methyltransferase-like 94.9 0.052 1.1E-06 44.3 4.9 35 110-144 60-95 (249)
266 COG1064 AdhP Zn-dependent alco 94.8 0.048 1.1E-06 48.2 4.9 85 106-197 162-258 (339)
267 TIGR00006 S-adenosyl-methyltra 94.7 0.022 4.8E-07 49.7 2.5 44 101-144 11-55 (305)
268 PHA01634 hypothetical protein 94.7 0.043 9.3E-07 41.4 3.6 35 110-144 28-62 (156)
269 PF06859 Bin3: Bicoid-interact 94.3 0.011 2.3E-07 43.4 -0.3 37 162-198 1-44 (110)
270 PF11312 DUF3115: Protein of u 93.9 0.86 1.9E-05 39.8 10.5 87 112-198 88-242 (315)
271 PRK13699 putative methylase; P 93.8 0.072 1.6E-06 44.6 3.6 21 178-198 52-72 (227)
272 COG2384 Predicted SAM-dependen 93.5 0.78 1.7E-05 38.0 9.1 106 109-232 15-141 (226)
273 cd08283 FDH_like_1 Glutathione 93.3 0.21 4.6E-06 45.0 6.2 93 106-198 180-306 (386)
274 PF05971 Methyltransf_10: Prot 93.2 0.08 1.7E-06 46.1 3.1 34 111-144 103-137 (299)
275 COG0286 HsdM Type I restrictio 93.0 0.4 8.7E-06 44.9 7.7 132 59-200 145-328 (489)
276 KOG1098 Putative SAM-dependent 92.9 0.86 1.9E-05 43.3 9.4 40 105-144 39-80 (780)
277 PRK10742 putative methyltransf 92.5 0.079 1.7E-06 44.8 2.1 36 108-144 84-121 (250)
278 KOG4058 Uncharacterized conser 92.4 0.21 4.5E-06 38.8 4.0 60 109-168 71-146 (199)
279 PF01861 DUF43: Protein of unk 92.4 1.2 2.6E-05 37.5 8.9 119 110-237 44-181 (243)
280 PRK11524 putative methyltransf 92.3 0.06 1.3E-06 46.6 1.2 21 178-198 60-80 (284)
281 PF07091 FmrO: Ribosomal RNA m 92.3 0.13 2.7E-06 43.5 2.9 116 108-228 103-238 (251)
282 PRK01747 mnmC bifunctional tRN 92.2 0.19 4.2E-06 48.8 4.6 64 161-240 165-232 (662)
283 KOG2198 tRNA cytosine-5-methyl 91.8 0.26 5.6E-06 43.8 4.5 94 108-201 153-299 (375)
284 KOG1562 Spermidine synthase [A 91.7 0.088 1.9E-06 45.4 1.5 91 108-198 119-236 (337)
285 COG2933 Predicted SAM-dependen 91.5 0.53 1.2E-05 40.1 5.8 83 105-191 206-296 (358)
286 KOG2671 Putative RNA methylase 91.4 0.41 8.9E-06 42.3 5.2 95 105-200 203-356 (421)
287 PTZ00357 methyltransferase; Pr 91.3 0.48 1E-05 45.6 5.9 81 113-193 703-830 (1072)
288 cd08254 hydroxyacyl_CoA_DH 6-h 91.1 0.73 1.6E-05 40.1 6.8 89 105-198 160-263 (338)
289 PF04445 SAM_MT: Putative SAM- 91.0 0.087 1.9E-06 44.2 0.7 60 112-172 77-162 (234)
290 PRK09424 pntA NAD(P) transhydr 90.8 0.37 8E-06 45.2 4.8 90 109-198 163-285 (509)
291 PF05206 TRM13: Methyltransfer 89.9 0.87 1.9E-05 38.9 5.9 47 98-144 6-58 (259)
292 PF10354 DUF2431: Domain of un 89.5 2 4.2E-05 34.2 7.3 109 116-233 2-151 (166)
293 PF01555 N6_N4_Mtase: DNA meth 89.4 0.51 1.1E-05 38.6 4.0 47 96-144 178-224 (231)
294 cd00315 Cyt_C5_DNA_methylase C 89.2 0.23 4.9E-06 42.9 1.9 56 113-168 2-68 (275)
295 PF05430 Methyltransf_30: S-ad 89.2 0.32 7E-06 36.7 2.4 68 161-244 49-120 (124)
296 COG1063 Tdh Threonine dehydrog 89.0 0.84 1.8E-05 40.8 5.4 86 108-198 166-269 (350)
297 PRK09880 L-idonate 5-dehydroge 88.7 0.44 9.6E-06 42.1 3.5 85 108-197 167-265 (343)
298 PRK11524 putative methyltransf 88.7 0.77 1.7E-05 39.7 4.8 47 96-144 195-241 (284)
299 KOG2730 Methylase [General fun 88.6 0.49 1.1E-05 39.2 3.3 61 110-172 94-154 (263)
300 KOG0024 Sorbitol dehydrogenase 88.3 1.6 3.4E-05 38.4 6.3 88 106-198 165-273 (354)
301 PRK13699 putative methylase; P 88.1 0.92 2E-05 38.0 4.8 46 97-144 151-196 (227)
302 PF06962 rRNA_methylase: Putat 85.3 0.17 3.7E-06 39.0 -1.0 21 179-199 73-93 (140)
303 COG0275 Predicted S-adenosylme 85.1 5.2 0.00011 34.9 7.7 46 99-144 12-59 (314)
304 COG3129 Predicted SAM-dependen 84.7 1.2 2.7E-05 37.2 3.7 35 109-144 77-113 (292)
305 KOG1501 Arginine N-methyltrans 84.4 1 2.2E-05 41.2 3.2 32 113-144 69-100 (636)
306 KOG2651 rRNA adenine N-6-methy 84.3 1.2 2.6E-05 40.0 3.6 35 110-144 153-187 (476)
307 cd05188 MDR Medium chain reduc 84.1 3.2 6.9E-05 34.5 6.2 88 106-198 130-232 (271)
308 COG3510 CmcI Cephalosporin hyd 83.7 5.6 0.00012 32.5 6.9 91 109-199 68-181 (237)
309 TIGR01202 bchC 2-desacetyl-2-h 83.4 1 2.2E-05 39.2 2.9 82 109-197 143-230 (308)
310 cd08237 ribitol-5-phosphate_DH 83.0 0.9 1.9E-05 40.2 2.4 86 108-197 161-255 (341)
311 KOG3924 Putative protein methy 82.9 1 2.2E-05 40.5 2.7 103 97-199 179-309 (419)
312 PF12692 Methyltransf_17: S-ad 81.7 8 0.00017 30.1 6.8 87 109-199 27-135 (160)
313 TIGR00561 pntA NAD(P) transhyd 81.1 0.99 2.2E-05 42.4 2.0 87 110-196 163-282 (511)
314 PF01795 Methyltransf_5: MraW 80.8 0.57 1.2E-05 41.0 0.3 38 107-144 17-55 (310)
315 cd08230 glucose_DH Glucose deh 80.8 1.5 3.3E-05 38.8 3.1 83 108-197 170-268 (355)
316 TIGR03451 mycoS_dep_FDH mycoth 80.7 4.3 9.3E-05 36.0 6.0 88 105-197 171-275 (358)
317 PF03686 UPF0146: Uncharacteri 80.6 3.8 8.2E-05 31.0 4.6 45 110-155 13-62 (127)
318 TIGR02822 adh_fam_2 zinc-bindi 80.5 4.4 9.5E-05 35.6 5.9 84 106-197 161-253 (329)
319 PF06460 NSP13: Coronavirus NS 80.5 3.9 8.4E-05 34.9 5.1 105 94-199 44-170 (299)
320 TIGR00027 mthyl_TIGR00027 meth 79.7 13 0.00028 31.7 8.3 137 96-232 67-248 (260)
321 PF02636 Methyltransf_28: Puta 79.4 6.1 0.00013 33.4 6.2 34 111-144 19-61 (252)
322 cd08281 liver_ADH_like1 Zinc-d 77.1 6.2 0.00013 35.2 5.9 88 105-197 186-289 (371)
323 cd08234 threonine_DH_like L-th 76.2 5.5 0.00012 34.6 5.2 88 105-197 154-256 (334)
324 cd08232 idonate-5-DH L-idonate 76.1 7.5 0.00016 33.9 6.1 84 110-198 165-262 (339)
325 PF11899 DUF3419: Protein of u 75.7 4.3 9.2E-05 36.8 4.4 37 107-144 32-68 (380)
326 COG0686 Ald Alanine dehydrogen 75.5 1.4 3E-05 38.6 1.1 85 112-196 169-266 (371)
327 COG1255 Uncharacterized protei 74.7 8.5 0.00018 28.6 4.9 80 111-196 14-100 (129)
328 PLN02586 probable cinnamyl alc 74.0 6 0.00013 35.2 4.9 85 108-197 181-277 (360)
329 PF02005 TRM: N2,N2-dimethylgu 74.0 1.2 2.7E-05 40.2 0.5 85 111-198 50-154 (377)
330 cd08255 2-desacetyl-2-hydroxye 73.9 5.5 0.00012 33.6 4.5 87 106-197 93-189 (277)
331 COG1867 TRM1 N2,N2-dimethylgua 73.8 3.4 7.5E-05 36.9 3.2 88 111-198 53-154 (380)
332 PLN03154 putative allyl alcoho 73.2 12 0.00025 33.2 6.5 86 106-197 154-257 (348)
333 KOG1253 tRNA methyltransferase 73.1 1.1 2.4E-05 41.4 -0.1 86 110-198 109-216 (525)
334 COG1565 Uncharacterized conser 71.7 9.9 0.00021 34.1 5.5 47 98-144 65-120 (370)
335 TIGR02825 B4_12hDH leukotriene 71.1 14 0.00031 32.0 6.6 87 105-197 133-236 (325)
336 KOG2013 SMT3/SUMO-activating c 70.6 5.9 0.00013 36.7 4.0 33 110-142 11-45 (603)
337 cd08239 THR_DH_like L-threonin 70.5 8.8 0.00019 33.5 5.1 86 107-197 160-261 (339)
338 PF11899 DUF3419: Protein of u 70.3 3.1 6.6E-05 37.7 2.1 54 146-199 277-335 (380)
339 cd00401 AdoHcyase S-adenosyl-L 69.2 5.1 0.00011 36.7 3.3 87 107-198 198-289 (413)
340 COG4301 Uncharacterized conser 68.6 14 0.00031 31.4 5.5 90 110-199 78-194 (321)
341 cd08294 leukotriene_B4_DH_like 68.3 14 0.0003 31.9 5.9 87 105-197 138-240 (329)
342 PF05711 TylF: Macrocin-O-meth 67.6 7.5 0.00016 33.0 3.8 50 178-237 192-242 (248)
343 KOG2912 Predicted DNA methylas 67.6 6.4 0.00014 34.7 3.4 50 95-144 85-137 (419)
344 cd05285 sorbitol_DH Sorbitol d 67.1 11 0.00025 32.9 5.1 88 105-197 157-264 (343)
345 PF01555 N6_N4_Mtase: DNA meth 67.0 3.9 8.6E-05 33.3 2.0 23 177-199 35-57 (231)
346 TIGR03366 HpnZ_proposed putati 66.5 11 0.00023 32.2 4.7 85 109-198 119-218 (280)
347 cd08245 CAD Cinnamyl alcohol d 65.6 16 0.00035 31.6 5.8 88 106-198 158-256 (330)
348 cd08231 MDR_TM0436_like Hypoth 65.2 23 0.00051 31.2 6.8 85 108-197 175-279 (361)
349 cd08261 Zn_ADH7 Alcohol dehydr 63.6 11 0.00023 33.0 4.2 88 105-197 154-257 (337)
350 KOG1209 1-Acyl dihydroxyaceton 63.5 15 0.00032 30.7 4.6 35 110-144 6-43 (289)
351 COG1062 AdhC Zn-dependent alco 62.3 19 0.00042 32.1 5.4 88 105-197 180-284 (366)
352 cd08293 PTGR2 Prostaglandin re 61.1 25 0.00054 30.7 6.2 84 108-197 150-253 (345)
353 PF03721 UDPG_MGDP_dh_N: UDP-g 61.1 19 0.0004 29.1 4.9 22 177-198 99-120 (185)
354 PF10237 N6-adenineMlase: Prob 61.0 18 0.00039 28.6 4.6 89 110-199 25-124 (162)
355 PF00107 ADH_zinc_N: Zinc-bind 60.7 2.1 4.5E-05 31.8 -0.7 73 121-198 2-89 (130)
356 cd08295 double_bond_reductase_ 60.1 9.1 0.0002 33.5 3.2 86 106-197 147-250 (338)
357 cd05278 FDH_like Formaldehyde 59.9 16 0.00034 31.9 4.7 86 107-197 164-266 (347)
358 PF08484 Methyltransf_14: C-me 59.8 31 0.00067 27.1 5.8 86 109-199 66-160 (160)
359 cd08298 CAD2 Cinnamyl alcohol 58.9 45 0.00098 28.7 7.4 86 105-197 162-255 (329)
360 KOG0023 Alcohol dehydrogenase, 58.7 13 0.00027 32.9 3.6 88 107-198 178-279 (360)
361 cd08263 Zn_ADH10 Alcohol dehyd 58.4 28 0.00061 30.8 6.1 86 108-198 185-287 (367)
362 PRK10309 galactitol-1-phosphat 58.2 19 0.0004 31.7 4.8 86 107-197 157-259 (347)
363 KOG2352 Predicted spermine/spe 58.1 9 0.00019 35.6 2.8 90 109-198 294-416 (482)
364 COG4121 Uncharacterized conser 57.9 28 0.00061 29.6 5.5 62 162-239 168-233 (252)
365 COG5379 BtaA S-adenosylmethion 56.7 16 0.00035 31.9 3.9 35 109-144 62-96 (414)
366 cd08285 NADP_ADH NADP(H)-depen 55.6 21 0.00044 31.4 4.7 87 106-197 162-265 (351)
367 PRK05476 S-adenosyl-L-homocyst 55.5 41 0.00089 31.0 6.6 86 108-198 209-299 (425)
368 COG0604 Qor NADPH:quinone redu 54.9 17 0.00036 32.1 3.9 88 105-199 137-242 (326)
369 PF07101 DUF1363: Protein of u 54.2 5.1 0.00011 28.5 0.4 17 114-130 6-22 (124)
370 cd08242 MDR_like Medium chain 53.9 23 0.00051 30.5 4.7 84 105-196 150-243 (319)
371 TIGR00006 S-adenosyl-methyltra 51.8 23 0.00049 31.1 4.1 26 173-198 215-240 (305)
372 KOG0821 Predicted ribosomal RN 51.1 36 0.00077 28.6 4.9 36 109-144 49-84 (326)
373 COG1086 Predicted nucleoside-d 50.6 24 0.00052 33.6 4.3 71 110-181 249-349 (588)
374 cd05281 TDH Threonine dehydrog 50.6 22 0.00048 31.0 4.0 85 108-197 161-261 (341)
375 PRK05808 3-hydroxybutyryl-CoA 49.5 15 0.00033 31.5 2.7 83 113-196 5-116 (282)
376 PRK08223 hypothetical protein; 48.8 25 0.00055 30.5 4.0 34 110-143 26-61 (287)
377 KOG2078 tRNA modification enzy 48.7 2.8 6E-05 38.3 -2.0 37 107-144 246-282 (495)
378 cd08274 MDR9 Medium chain dehy 47.7 86 0.0019 27.2 7.4 86 106-197 173-272 (350)
379 PRK00050 16S rRNA m(4)C1402 me 47.6 30 0.00065 30.2 4.3 27 172-198 210-236 (296)
380 cd08279 Zn_ADH_class_III Class 47.1 59 0.0013 28.7 6.2 87 106-197 178-281 (363)
381 cd05213 NAD_bind_Glutamyl_tRNA 46.7 13 0.00029 32.5 1.9 111 110-223 177-301 (311)
382 PRK12480 D-lactate dehydrogena 46.7 11 0.00024 33.4 1.5 79 110-196 145-232 (330)
383 COG0863 DNA modification methy 46.6 43 0.00093 28.6 5.2 46 97-144 210-255 (302)
384 PLN02514 cinnamyl-alcohol dehy 46.4 29 0.00064 30.7 4.2 86 107-197 177-274 (357)
385 cd03420 SirA_RHOD_Pry_redox Si 46.1 84 0.0018 20.6 7.2 48 177-235 12-59 (69)
386 PF00145 DNA_methylase: C-5 cy 45.1 20 0.00043 31.0 2.8 119 113-239 2-150 (335)
387 KOG1227 Putative methyltransfe 45.0 6.2 0.00013 34.4 -0.4 36 109-144 193-229 (351)
388 cd08241 QOR1 Quinone oxidoredu 45.0 49 0.0011 28.0 5.3 39 106-144 135-175 (323)
389 cd03423 SirA SirA (also known 44.9 88 0.0019 20.5 7.3 57 177-245 12-68 (69)
390 PRK05708 2-dehydropantoate 2-r 44.7 63 0.0014 28.1 5.9 81 112-197 3-103 (305)
391 cd08243 quinone_oxidoreductase 44.0 86 0.0019 26.5 6.7 84 107-197 139-237 (320)
392 KOG2015 NEDD8-activating compl 43.5 21 0.00046 31.6 2.6 30 112-142 41-73 (422)
393 PF11599 AviRa: RRNA methyltra 43.4 25 0.00054 29.3 2.9 35 110-144 51-88 (246)
394 TIGR00692 tdh L-threonine 3-de 43.0 39 0.00084 29.5 4.4 86 108-198 159-261 (340)
395 cd05289 MDR_like_2 alcohol deh 41.9 1.4E+02 0.003 24.9 7.6 84 108-197 142-237 (309)
396 KOG2539 Mitochondrial/chloropl 41.9 22 0.00049 32.9 2.6 88 111-198 201-315 (491)
397 KOG1201 Hydroxysteroid 17-beta 41.5 2.1E+02 0.0045 25.1 8.3 34 110-144 37-73 (300)
398 KOG2811 Uncharacterized conser 41.5 98 0.0021 28.0 6.4 33 110-142 182-218 (420)
399 PF01795 Methyltransf_5: MraW 40.8 28 0.0006 30.7 3.0 25 174-198 217-241 (310)
400 KOG1252 Cystathionine beta-syn 40.7 1.4E+02 0.003 26.8 7.1 33 112-144 213-250 (362)
401 TIGR02441 fa_ox_alpha_mit fatt 40.7 44 0.00095 33.2 4.7 82 112-198 336-450 (737)
402 cd08236 sugar_DH NAD(P)-depend 40.5 38 0.00082 29.5 3.9 87 107-198 156-258 (343)
403 PRK08410 2-hydroxyacid dehydro 40.4 71 0.0015 28.0 5.6 79 110-196 144-230 (311)
404 PF05050 Methyltransf_21: Meth 40.4 25 0.00054 26.8 2.5 29 116-144 1-34 (167)
405 PRK08306 dipicolinate synthase 40.0 19 0.00041 31.3 1.9 79 110-196 151-239 (296)
406 PRK09260 3-hydroxybutyryl-CoA 39.3 8.2 0.00018 33.3 -0.5 31 113-144 3-35 (288)
407 COG3315 O-Methyltransferase in 39.1 37 0.0008 29.7 3.5 138 96-233 78-263 (297)
408 cd08286 FDH_like_ADH2 formalde 39.1 91 0.002 27.1 6.1 84 107-197 163-265 (345)
409 KOG1269 SAM-dependent methyltr 38.5 43 0.00093 30.2 3.9 88 111-198 181-313 (364)
410 PRK15469 ghrA bifunctional gly 38.3 36 0.00078 29.9 3.4 34 110-144 135-170 (312)
411 PF14740 DUF4471: Domain of un 38.0 21 0.00044 31.1 1.7 58 161-230 221-285 (289)
412 KOG0022 Alcohol dehydrogenase, 37.0 45 0.00099 29.5 3.6 40 105-144 187-228 (375)
413 PLN02494 adenosylhomocysteinas 36.8 50 0.0011 30.9 4.1 86 108-198 251-341 (477)
414 PRK11064 wecC UDP-N-acetyl-D-m 36.5 26 0.00057 32.1 2.3 32 112-144 4-37 (415)
415 PRK10669 putative cation:proto 36.2 61 0.0013 30.8 4.8 83 112-198 418-515 (558)
416 PRK06249 2-dehydropantoate 2-r 35.9 1.1E+02 0.0023 26.7 6.0 84 111-197 5-105 (313)
417 PRK00299 sulfur transfer prote 35.6 1.4E+02 0.0031 20.3 7.2 58 177-246 22-79 (81)
418 cd08240 6_hydroxyhexanoate_dh_ 35.3 1.1E+02 0.0024 26.7 6.0 85 108-197 173-273 (350)
419 PRK06035 3-hydroxyacyl-CoA deh 35.3 27 0.00058 30.1 2.1 32 112-144 4-37 (291)
420 PRK13243 glyoxylate reductase; 35.0 94 0.002 27.5 5.5 34 110-144 149-184 (333)
421 PF01206 TusA: Sulfurtransfera 34.5 1.3E+02 0.0028 19.5 6.2 58 177-246 13-70 (70)
422 COG0677 WecC UDP-N-acetyl-D-ma 34.5 1.5E+02 0.0033 27.1 6.6 21 178-198 108-128 (436)
423 PRK07819 3-hydroxybutyryl-CoA 34.5 37 0.00081 29.3 2.8 86 112-198 6-121 (286)
424 PRK11730 fadB multifunctional 34.4 48 0.001 32.8 3.8 86 112-198 314-428 (715)
425 PF02254 TrkA_N: TrkA-N domain 34.4 37 0.0008 24.4 2.4 76 119-198 4-96 (116)
426 PF14314 Methyltrans_Mon: Viru 34.2 2.1E+02 0.0046 28.1 8.0 84 162-249 415-503 (675)
427 cd08289 MDR_yhfp_like Yhfp put 33.9 1.2E+02 0.0027 25.9 6.1 84 109-198 145-243 (326)
428 TIGR00518 alaDH alanine dehydr 33.7 9.3 0.0002 34.4 -1.1 35 110-144 166-201 (370)
429 PRK03659 glutathione-regulated 33.3 68 0.0015 31.0 4.6 81 112-198 401-498 (601)
430 COG0031 CysK Cysteine synthase 33.0 1.4E+02 0.003 26.2 6.1 58 82-144 145-207 (300)
431 PRK09510 tolA cell envelope in 32.8 78 0.0017 28.8 4.6 32 2-33 3-34 (387)
432 PRK07530 3-hydroxybutyryl-CoA 32.6 25 0.00053 30.3 1.4 32 112-144 5-38 (292)
433 cd08266 Zn_ADH_like1 Alcohol d 32.4 1.7E+02 0.0036 24.9 6.7 87 106-198 162-265 (342)
434 TIGR02437 FadB fatty oxidation 32.2 38 0.00082 33.5 2.7 85 113-198 315-428 (714)
435 KOG1202 Animal-type fatty acid 32.1 1.5E+02 0.0032 31.6 6.6 24 176-199 1238-1261(2376)
436 TIGR02819 fdhA_non_GSH formald 31.6 97 0.0021 28.0 5.1 92 106-197 181-298 (393)
437 PLN02740 Alcohol dehydrogenase 31.5 83 0.0018 28.1 4.7 40 105-144 193-234 (381)
438 PRK06153 hypothetical protein; 31.3 62 0.0013 29.5 3.7 33 110-142 175-209 (393)
439 cd08291 ETR_like_1 2-enoyl thi 31.2 68 0.0015 27.7 4.0 35 110-144 142-179 (324)
440 PRK03562 glutathione-regulated 31.0 1.4E+02 0.0031 29.0 6.4 83 111-198 400-498 (621)
441 PRK05396 tdh L-threonine 3-deh 30.8 83 0.0018 27.3 4.5 85 109-198 162-263 (341)
442 TIGR00675 dcm DNA-methyltransf 30.6 44 0.00096 29.3 2.7 53 114-166 1-63 (315)
443 PRK11154 fadJ multifunctional 30.1 68 0.0015 31.7 4.1 87 112-198 310-425 (708)
444 COG0773 MurC UDP-N-acetylmuram 30.1 1.6E+02 0.0036 27.4 6.2 23 176-198 196-218 (459)
445 TIGR02818 adh_III_F_hyde S-(hy 29.8 1E+02 0.0022 27.3 5.0 40 105-144 180-221 (368)
446 COG0287 TyrA Prephenate dehydr 28.9 65 0.0014 27.9 3.3 81 112-195 4-95 (279)
447 PRK07502 cyclohexadienyl dehyd 28.8 34 0.00074 29.7 1.7 33 112-144 7-42 (307)
448 cd08235 iditol_2_DH_like L-idi 28.7 93 0.002 26.9 4.4 87 107-198 162-265 (343)
449 PTZ00075 Adenosylhomocysteinas 28.5 64 0.0014 30.2 3.4 84 108-198 251-341 (476)
450 TIGR02356 adenyl_thiF thiazole 28.5 74 0.0016 25.9 3.5 33 110-142 20-54 (202)
451 TIGR01381 E1_like_apg7 E1-like 28.1 68 0.0015 31.3 3.6 34 110-143 337-372 (664)
452 cd05286 QOR2 Quinone oxidoredu 28.1 1.6E+02 0.0034 24.6 5.7 86 106-197 132-234 (320)
453 TIGR03201 dearomat_had 6-hydro 28.1 77 0.0017 27.8 3.8 39 106-144 162-201 (349)
454 PLN02545 3-hydroxybutyryl-CoA 28.0 43 0.00094 28.8 2.2 32 112-144 5-38 (295)
455 PRK07066 3-hydroxybutyryl-CoA 27.9 30 0.00065 30.6 1.1 32 112-144 8-41 (321)
456 PRK06522 2-dehydropantoate 2-r 27.8 35 0.00077 29.2 1.6 81 113-196 2-98 (304)
457 cd08270 MDR4 Medium chain dehy 27.8 2.1E+02 0.0045 24.1 6.4 80 110-197 132-221 (305)
458 PRK08293 3-hydroxybutyryl-CoA 27.7 38 0.00083 29.1 1.7 32 112-144 4-37 (287)
459 COG1568 Predicted methyltransf 26.9 68 0.0015 27.9 3.0 86 110-198 152-260 (354)
460 cd08296 CAD_like Cinnamyl alco 26.8 1.1E+02 0.0023 26.6 4.4 87 107-198 160-259 (333)
461 PRK09422 ethanol-active dehydr 26.7 44 0.00096 28.9 2.0 39 106-144 158-198 (338)
462 PF06897 DUF1269: Protein of u 26.5 2.5E+02 0.0054 20.2 5.9 45 173-228 37-81 (102)
463 PF02737 3HCDH_N: 3-hydroxyacy 26.3 38 0.00082 27.0 1.4 36 163-198 79-114 (180)
464 PTZ00354 alcohol dehydrogenase 26.3 2.6E+02 0.0056 23.8 6.8 86 106-197 136-239 (334)
465 cd08233 butanediol_DH_like (2R 26.2 1.7E+02 0.0037 25.5 5.7 87 106-197 168-271 (351)
466 PRK08818 prephenate dehydrogen 26.1 81 0.0018 28.5 3.6 32 111-142 4-38 (370)
467 COG0569 TrkA K+ transport syst 26.1 98 0.0021 25.7 3.9 42 113-155 2-55 (225)
468 PRK06932 glycerate dehydrogena 26.0 2.8E+02 0.006 24.3 6.9 78 110-196 146-231 (314)
469 PRK08328 hypothetical protein; 25.8 81 0.0018 26.3 3.3 34 111-144 27-62 (231)
470 PF11253 DUF3052: Protein of u 25.7 3E+02 0.0065 20.8 7.5 53 176-234 59-111 (127)
471 PF02719 Polysacc_synt_2: Poly 25.7 39 0.00084 29.5 1.4 66 115-181 2-101 (293)
472 cd05284 arabinose_DH_like D-ar 25.6 2.6E+02 0.0056 24.0 6.7 84 107-197 164-265 (340)
473 cd08265 Zn_ADH3 Alcohol dehydr 25.5 1.4E+02 0.003 26.6 5.1 87 106-197 199-306 (384)
474 cd05283 CAD1 Cinnamyl alcohol 25.3 75 0.0016 27.6 3.2 85 108-197 167-262 (337)
475 cd08284 FDH_like_2 Glutathione 25.2 1.4E+02 0.0029 25.9 4.8 84 107-197 164-265 (344)
476 cd05279 Zn_ADH1 Liver alcohol 25.0 2E+02 0.0044 25.3 6.0 89 105-198 178-285 (365)
477 PRK06487 glycerate dehydrogena 24.7 2.6E+02 0.0055 24.6 6.4 33 110-142 147-180 (317)
478 TIGR00936 ahcY adenosylhomocys 24.6 1.6E+02 0.0034 27.1 5.1 86 108-198 192-282 (406)
479 PRK06130 3-hydroxybutyryl-CoA 24.4 17 0.00037 31.6 -1.1 32 112-144 5-38 (311)
480 PRK00676 hemA glutamyl-tRNA re 24.4 79 0.0017 28.2 3.1 107 110-224 173-289 (338)
481 KOG2918 Carboxymethyl transfer 24.4 2.1E+02 0.0046 25.3 5.6 35 109-143 86-123 (335)
482 TIGR02354 thiF_fam2 thiamine b 24.3 1E+02 0.0022 25.1 3.6 32 111-142 21-54 (200)
483 PF02086 MethyltransfD12: D12 24.3 66 0.0014 26.8 2.6 34 110-144 20-53 (260)
484 cd08297 CAD3 Cinnamyl alcohol 24.1 1.5E+02 0.0032 25.6 4.9 87 107-198 162-265 (341)
485 PRK09548 PTS system ascorbate- 24.0 49 0.0011 31.8 1.8 55 109-169 504-561 (602)
486 PRK11018 hypothetical protein; 23.8 2.4E+02 0.0051 19.0 7.2 47 177-234 21-67 (78)
487 PRK12767 carbamoyl phosphate s 23.7 1.3E+02 0.0028 26.1 4.4 33 112-144 2-36 (326)
488 cd05288 PGDH Prostaglandin deh 23.7 3E+02 0.0064 23.5 6.7 85 107-197 142-243 (329)
489 TIGR02263 benz_CoA_red_C benzo 23.6 5.5E+02 0.012 23.1 12.7 111 110-232 232-357 (380)
490 PLN02928 oxidoreductase family 23.5 2.6E+02 0.0057 24.9 6.3 34 110-143 158-192 (347)
491 cd01065 NAD_bind_Shikimate_DH 23.1 1.8E+02 0.0039 21.8 4.7 36 109-144 17-54 (155)
492 COG2961 ComJ Protein involved 22.9 4.8E+02 0.011 22.4 7.2 91 109-202 88-199 (279)
493 TIGR03042 PS_II_psbQ_bact phot 22.8 2.9E+02 0.0064 21.3 5.6 17 79-95 55-71 (142)
494 cd08246 crotonyl_coA_red croto 22.7 1.8E+02 0.0038 26.0 5.2 38 107-144 190-229 (393)
495 KOG3350 Uncharacterized conser 22.6 3.4E+02 0.0073 22.1 6.0 89 109-198 72-172 (217)
496 cd08258 Zn_ADH4 Alcohol dehydr 22.5 4.9E+02 0.011 22.2 8.0 20 179-198 245-264 (306)
497 cd08250 Mgc45594_like Mgc45594 22.2 2.7E+02 0.0058 23.8 6.1 86 106-197 135-236 (329)
498 PRK05225 ketol-acid reductoiso 21.9 1E+02 0.0022 28.9 3.3 21 179-199 112-132 (487)
499 COG1893 ApbA Ketopantoate redu 21.8 1.4E+02 0.0029 26.2 4.1 82 112-198 1-101 (307)
500 PRK10458 DNA cytosine methylas 21.8 1.1E+02 0.0023 28.7 3.6 35 109-143 86-120 (467)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.83 E-value=4.1e-20 Score=154.09 Aligned_cols=132 Identities=23% Similarity=0.315 Sum_probs=104.7
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
...+|.+|||||||||.++..+++. +.++|+|+|+|+. ++.++.+|++++||+|++||+|.+ -
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f 127 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee
Confidence 3457999999999999999999985 6789999999976 367899999999999999999877 5
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCC---C----------------cCcCCC-C------------CcCChhH
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSK---R----------------ADKYSA-N------------DLFSVKP 217 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~---~----------------~~~y~~-~------------~~~~~~~ 217 (257)
.+.++.|++++|+|++|+|||||++++..-... . ...+.. + .+.+.++
T Consensus 128 glrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~ 207 (238)
T COG2226 128 GLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEE 207 (238)
T ss_pred hhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999998887641110 0 000000 0 4447888
Q ss_pred HHHhcccCCcEEEEEec-CCCC
Q 025148 218 LVKLFKRSEMVRVRKVD-GFGL 238 (257)
Q Consensus 218 ~~~~f~~~~~~~~~~~~-gf~~ 238 (257)
+.+.+.+.||..+.... .++.
T Consensus 208 l~~~~~~~gf~~i~~~~~~~G~ 229 (238)
T COG2226 208 LKQMIEKAGFEEVRYENLTFGI 229 (238)
T ss_pred HHHHHHhcCceEEeeEeeeeee
Confidence 88999999998888443 5553
No 2
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.81 E-value=2.5e-19 Score=156.71 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=100.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.++.+|||||||+|.++..+++.+ .+|+|+|++++ .+.+++++++++++++++||+|+| +++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456799999999999999998865 49999999965 356778888888888889999988 699
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCC--------------cCc----CCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------------ADK----YSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~~~----y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+|+.++..+++++.++|||||.+++.+++... .|. .....+++++++.+++++.|+.....
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999999999999865321 010 01124679999999999999875544
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=2.3e-19 Score=150.61 Aligned_cols=91 Identities=26% Similarity=0.381 Sum_probs=68.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|..+..+++. +.++|+|+|+|+. ++.++++|++++|+++++||+|+|.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 467889999999999999999875 3569999999966 5689999999999999999999884
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.++++.|+.++++|++|+|||||.+++..
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 89999999999999999999999988764
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.77 E-value=2.9e-18 Score=146.63 Aligned_cols=131 Identities=23% Similarity=0.239 Sum_probs=104.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC------------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY------------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
+.++.+|||+|||+|.++..+++. + .++|+|+|+|++ ++.++++|+.++|+++++||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 467889999999999999988875 3 469999999965 24578899999999999999998
Q ss_pred HH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------------CcCC-----------CCCcCChh
Q 025148 168 SN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------------DKYS-----------ANDLFSVK 216 (257)
Q Consensus 168 ~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------------~~y~-----------~~~~~~~~ 216 (257)
++ +++|+.++.+++++++|+|||||.+++........ ..+. ...+++.+
T Consensus 151 ~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~ 230 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGE 230 (261)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHH
Confidence 84 99999999999999999999999998876432110 0000 02467999
Q ss_pred HHHHhcccCCcEEEEEec-CCCC
Q 025148 217 PLVKLFKRSEMVRVRKVD-GFGL 238 (257)
Q Consensus 217 ~~~~~f~~~~~~~~~~~~-gf~~ 238 (257)
++.+++++.||..+.... +++.
T Consensus 231 el~~ll~~aGF~~~~~~~~~~g~ 253 (261)
T PLN02233 231 ELEKLALEAGFSSAKHYEISGGL 253 (261)
T ss_pred HHHHHHHHCCCCEEEEEEcCCCe
Confidence 999999999998777655 5453
No 5
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.76 E-value=8.2e-18 Score=143.46 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=111.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------CCcEEEecC
Q 025148 83 WTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------PPLVIEGDF 153 (257)
Q Consensus 83 w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------~~~~~~~d~ 153 (257)
|+...|.+....-......++......++.+|||||||+|.++..+++. +..+|+|+|+|+. .+.+.++|+
T Consensus 2 w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~ 81 (255)
T PRK14103 2 WDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV 81 (255)
T ss_pred CCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh
Confidence 6666666655554455566665555577899999999999999999886 4569999999976 467888998
Q ss_pred CCCCCCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCC--------------CcCc-------C-CCC
Q 025148 154 HRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSK--------------RADK-------Y-SAN 210 (257)
Q Consensus 154 ~~~~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~~~-------y-~~~ 210 (257)
.+++ ++++||+|+|+ +++|+.++.+++++++++|||||.+++.++... ..|. + ...
T Consensus 82 ~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 160 (255)
T PRK14103 82 RDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGA 160 (255)
T ss_pred hhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCc
Confidence 8774 56789999995 999999999999999999999999999865310 0011 0 012
Q ss_pred CcCChhHHHHhcccCCcEE
Q 025148 211 DLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 211 ~~~~~~~~~~~f~~~~~~~ 229 (257)
.+.+..++.+++++.||..
T Consensus 161 ~~~~~~~~~~~l~~aGf~v 179 (255)
T PRK14103 161 VVQTPAGYAELLTDAGCKV 179 (255)
T ss_pred CCCCHHHHHHHHHhCCCeE
Confidence 3458899999999999853
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.76 E-value=7.4e-18 Score=149.37 Aligned_cols=125 Identities=24% Similarity=0.324 Sum_probs=102.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.++.+|||||||+|.++..+++...++|+|+|+|+. ++.+..+|+.++++++++||+|++ .++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 567899999999999999999864569999999965 367889999999999999999998 599
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------------CcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------------DKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+|+.++.+++++++|+|||||.+++..+..... ..|....+.+..++.+++++.||..+..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~ 276 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT 276 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence 999999999999999999999999976432110 0111223347889999999999987665
Q ss_pred e
Q 025148 233 V 233 (257)
Q Consensus 233 ~ 233 (257)
.
T Consensus 277 ~ 277 (340)
T PLN02244 277 E 277 (340)
T ss_pred e
Confidence 4
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=1.6e-18 Score=142.59 Aligned_cols=119 Identities=19% Similarity=0.270 Sum_probs=93.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC--------------CcEEEecCCCCCCCCCchhHHHH-HHhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP--------------PLVIEGDFHRQPFDDETFDFEFS-NVFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~-~~l~h 173 (257)
-+|.+|||||||-|.++..|++.| .+|+|+|+++.+ +.+.+...+++....++||+|+| +++||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 478999999999999999999998 599999999883 23455555555555589999999 69999
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCC--------------cC----cCCCCCcCChhHHHHhcccCCcE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKR--------------AD----KYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~~----~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+++|+.+++.+.+.+||||.+++++++... .+ .-....+..+.++..++...++.
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCce
Confidence 999999999999999999999999875321 11 11111445677888888776664
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.75 E-value=8.8e-19 Score=125.99 Aligned_cols=82 Identities=38% Similarity=0.550 Sum_probs=71.8
Q ss_pred EEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccHHHHH
Q 025148 115 LCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFV 181 (257)
Q Consensus 115 LDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~~l 181 (257)
||+|||+|..+..+++.+..+++|+|+++. ...+..+|..++|+++++||+|++ ++++|+.++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 899999999999999986679999999976 344899999999999999999988 5999999999999
Q ss_pred HHHHHhccCCcEEEE
Q 025148 182 MEIERTLKPGGVCVL 196 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i 196 (257)
+++.|+|||||+++|
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999986
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.75 E-value=8.3e-19 Score=138.51 Aligned_cols=123 Identities=28% Similarity=0.470 Sum_probs=99.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC-----CcEEEecCCCCCCCCCchhHHHH-HHhhccccHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP-----PLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFV 181 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~-----~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~~l 181 (257)
..++.+|||||||+|.++..+++.+. +++|+|+++.. ......+....+.++++||+|+| ++++|+.++.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l 98 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFL 98 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHH
Confidence 46788999999999999999988776 99999999752 33333434455567889999998 5999999999999
Q ss_pred HHHHHhccCCcEEEEEeccCCC-------cCcC-----CCCCcCChhHHHHhcccCCcEEEE
Q 025148 182 MEIERTLKPGGVCVLHVALSKR-------ADKY-----SANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i~~~~~~~-------~~~y-----~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
+++.++|||||++++.++.... .|.+ ....+++..++..++++.|+..+.
T Consensus 99 ~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 99 KELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9999999999999999986431 2222 223678999999999999998765
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.72 E-value=9.2e-17 Score=136.63 Aligned_cols=119 Identities=20% Similarity=0.313 Sum_probs=98.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH-HhhccccH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYP 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~ 177 (257)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ...++++|+.++++++++||+|+++ ++++..++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 356799999999999999988765 59999999976 2467899999999999999999996 89999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCC-----------cCcCCCCCcCChhHHHHhcccCCcE
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKR-----------ADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~-----------~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
.+++.++.++|||||.++++++.... ......+.+++.+++..++...++.
T Consensus 120 ~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 120 STALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCce
Confidence 99999999999999999999765432 1122334667888899888877654
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.71 E-value=5.6e-17 Score=136.21 Aligned_cols=140 Identities=20% Similarity=0.235 Sum_probs=106.6
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
.++++.+|||+|||+|.++..+++. +.++|+|+|+++. ++.++.+|..++++++++||+|++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 4567889999999999999999875 3469999999855 356788999888888899999988
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCc--------------------------C-----CCCCcCChhH
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADK--------------------------Y-----SANDLFSVKP 217 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--------------------------y-----~~~~~~~~~~ 217 (257)
.+++|+.++.++++++.++|||||.+++..+.....+. | ....+.+..+
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE 201 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence 48999999999999999999999999987543211100 0 0013456788
Q ss_pred HHHhcccCCcEEEEEec-CCCCceEEEEEc
Q 025148 218 LVKLFKRSEMVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 218 ~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k 246 (257)
+..++++.||..+.... .++..+.++..|
T Consensus 202 l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 202 LAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 99999999998765544 445555555543
No 12
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.71 E-value=6.3e-17 Score=142.21 Aligned_cols=125 Identities=26% Similarity=0.325 Sum_probs=100.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
..+.+|||||||+|.++..+++.+...|+|+|+|+. ++.+..+++.++++ +++||+|+| +++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 457899999999999999999887667999999863 35678888888888 788999998 599
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCC--------cCcCCCC----CcCChhHHHHhcccCCcEEEEEec
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------ADKYSAN----DLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------~~~y~~~----~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+|..++..++++++++|||||.+++++..... .+.|... .+.+..++..++.++||..+...+
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 99999999999999999999999987532110 1122211 234888999999999998877664
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.71 E-value=9.4e-17 Score=136.97 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=97.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC-CCCCchhHHHH-HH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP-FDDETFDFEFS-NV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~-~~~~~fD~V~~-~~ 170 (257)
..+.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.++++|+.+++ +.+++||+|++ ++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 456799999999999999999976 49999999965 3467788887763 56789999988 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCC----------------------cCcCCCCCcCChhHHHHhcccCCcE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKR----------------------ADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~----------------------~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
++|+.++.++++++.++|||||++++...+... .........++++++.+++++.||.
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~ 201 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQ 201 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCe
Confidence 999999999999999999999999987654321 0011112346789999999999997
Q ss_pred EEE
Q 025148 229 RVR 231 (257)
Q Consensus 229 ~~~ 231 (257)
.+.
T Consensus 202 ~~~ 204 (255)
T PRK11036 202 IMG 204 (255)
T ss_pred Eee
Confidence 654
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.70 E-value=7.8e-17 Score=137.98 Aligned_cols=136 Identities=20% Similarity=0.259 Sum_probs=105.4
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhH
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
...++....+.++.+|||||||+|..+..+++...++|+|+|+|+. .+.+..+|+.+.++++++||+
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEE
Confidence 3444445556788999999999999999888754469999999964 366788899888999999999
Q ss_pred HHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCc--C-----cC---CCCCcCChhHHHHhcccCCcEEEEE
Q 025148 166 EFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRA--D-----KY---SANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 166 V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~-----~y---~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
|++ +++.|+. ++.+++++++++|||||.+++..+..... + .+ ....+.+..++..++++.||..+..
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 200 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA 200 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence 998 5888886 88899999999999999999986532210 0 00 0113457889999999999987766
Q ss_pred ec
Q 025148 233 VD 234 (257)
Q Consensus 233 ~~ 234 (257)
.+
T Consensus 201 ~d 202 (263)
T PTZ00098 201 KD 202 (263)
T ss_pred Ee
Confidence 54
No 15
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.70 E-value=7.7e-17 Score=140.51 Aligned_cols=129 Identities=20% Similarity=0.204 Sum_probs=100.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
..++++|||||||+|.++..++..+...|+|+|+|+. .+.+...++.+++.. ++||+|+| ++
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 3567899999999999999988877668999999874 234566677777754 47999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCC--------cCcCCC----CCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------ADKYSA----NDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------~~~y~~----~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
++|..++..++++++++|||||.+++++...+. .+.|.. ..+.+..++..+++++||..+.......
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence 999999999999999999999999998542111 111211 1345889999999999999988776444
No 16
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.68 E-value=2.2e-16 Score=126.36 Aligned_cols=126 Identities=21% Similarity=0.311 Sum_probs=103.6
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCC--CCCCCchhHHHH-HHhhcc
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQ--PFDDETFDFEFS-NVFDHA 174 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~--~~~~~~fD~V~~-~~l~h~ 174 (257)
..+++|.+|||+|||.|.+...|.+...++.+|+|++++ .+.++++|+.+- .|+|++||.|+. .+++++
T Consensus 9 ~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 9 EWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred HHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 346889999999999999999999977789999999987 578999999864 589999999766 699999
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEeccCCC---------------------cCcCCCC-CcCChhHHHHhcccCCcEEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHVALSKR---------------------ADKYSAN-DLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------------~~~y~~~-~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
.+|+++++|+.|+ |...+++.|+..+ .|.-..| ++.+..+++.+.++.++.....
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 9999999999777 6688999887432 2222222 6779999999999999987766
Q ss_pred ec
Q 025148 233 VD 234 (257)
Q Consensus 233 ~~ 234 (257)
..
T Consensus 166 ~~ 167 (193)
T PF07021_consen 166 VF 167 (193)
T ss_pred EE
Confidence 53
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=2.4e-16 Score=145.91 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=101.6
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.+.++.+|||||||+|..+..+++...++|+|+|+|+. .+.+..+|+.+.++++++||+|+| +++
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence 34678899999999999999998865569999999955 356788999988888889999999 599
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCc------CcC--C-CCCcCChhHHHHhcccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRA------DKY--S-ANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~------~~y--~-~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+|+.++.+++++++|+|||||.+++..+..... ..+ . ...+++..++.+++++.||..+..
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 999999999999999999999999986532210 000 0 114568888999999999987644
No 18
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.66 E-value=2.6e-16 Score=134.32 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=91.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEe
Q 025148 83 WTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEG 151 (257)
Q Consensus 83 w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~ 151 (257)
|+...+.+....-......++....+.++.+|||||||+|.++..+++. +..+|+|+|+|+. ++.+..+
T Consensus 4 w~~~~Y~~~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~ 83 (258)
T PRK01683 4 WNPSLYLKFEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA 83 (258)
T ss_pred CCHHHHHHHHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence 5555555444333334445554545577889999999999999999875 5569999999975 4667888
Q ss_pred cCCCCCCCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 152 DFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 152 d~~~~~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|+.++. ++++||+|+++ +++|+.++.++++++.++|||||.+++.++.
T Consensus 84 d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 84 DIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred chhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 887764 45689999995 9999999999999999999999999998753
No 19
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.66 E-value=3.3e-17 Score=135.05 Aligned_cols=90 Identities=27% Similarity=0.268 Sum_probs=78.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CC------CcEEEecCCCC------------------CCcEEEecCCCCCCCCCch
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GV------SDSVGIDLVPY------------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~------~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~f 163 (257)
..+.++||++||||.++..+.+. +. .+|+.+|+|+. ...++++|++++||++++|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 56789999999999999998874 22 68999999977 2678999999999999999
Q ss_pred hHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 164 DFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 164 D~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|.... -.+..+.+++++++|++|+|||||++.+..
T Consensus 179 D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99644 689999999999999999999999988653
No 20
>PRK05785 hypothetical protein; Provisional
Probab=99.66 E-value=5.3e-16 Score=129.95 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------CCcEEEecCCCCCCCCCchhHHHHH-HhhccccHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFV 181 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~~~~l 181 (257)
++.+|||+|||+|.++..+++....+|+|+|+|+. ....+++|++++|+++++||+|++. +++|+.++++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l 130 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVI 130 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence 47899999999999999998873359999999987 2346789999999999999999885 999999999999
Q ss_pred HHHHHhccCC
Q 025148 182 MEIERTLKPG 191 (257)
Q Consensus 182 ~~~~r~Lkpg 191 (257)
+|++|+|||.
T Consensus 131 ~e~~RvLkp~ 140 (226)
T PRK05785 131 AEFTRVSRKQ 140 (226)
T ss_pred HHHHHHhcCc
Confidence 9999999994
No 21
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.65 E-value=4.9e-16 Score=132.23 Aligned_cols=125 Identities=27% Similarity=0.369 Sum_probs=99.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CC--cEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PP--LVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~--~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
-.|.+|||||||+|+++..++..|...|+|+|.+.. .. ..+-..++++|. .++||+|+| +|+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 368899999999999999999998889999999865 11 122235566666 688999999 799
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCC--------cCcCCCC----CcCChhHHHHhcccCCcEEEEEec
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------ADKYSAN----DLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------~~~y~~~----~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.|..+|...+.+++..|++||.+++.+-.-+. ...|... .+-+...+..+++++||..++.++
T Consensus 193 YHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 193 YHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred hccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 99999999999999999999999998632111 2334332 223899999999999999998876
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=1.6e-15 Score=124.48 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=90.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+. ++.+...|+.+.+++ ++||+|+|+ +++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchh
Confidence 4568999999999999999999764 9999999975 256677888777764 579999985 777
Q ss_pred ccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC--CCCcCChhHHHHhcccCCcEEEEEecC
Q 025148 173 HAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYS--ANDLFSVKPLVKLFKRSEMVRVRKVDG 235 (257)
Q Consensus 173 h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~--~~~~~~~~~~~~~f~~~~~~~~~~~~g 235 (257)
|+. +...+++++.++|||||++++..........+. ....++..++.+.|+ +|..+....+
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~ 171 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNED 171 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCC
Confidence 765 567899999999999999665432211111111 224568889999998 6665555444
No 23
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.61 E-value=4.9e-16 Score=128.85 Aligned_cols=114 Identities=20% Similarity=0.248 Sum_probs=86.9
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC---------------------CcEEEecCCCCCCCCCchhHHHH-
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP---------------------PLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~---------------------~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
|.+|||+|||+|.++..|++.|. +|+|+|+++.+ +.+.+.+.+.. .+.||.|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 47899999999999999999885 99999999761 12233333332 245999888
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC------------------cCcCCCCCcCChhHHHHhcccCCcE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR------------------ADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~------------------~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
.++||+.||++++..+.+.|||||.+++++-+... ......+.+.++.++..++...+..
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~ 243 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ 243 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence 69999999999999999999999999999733111 1122223566899999999887653
No 24
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.61 E-value=1.6e-15 Score=133.36 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=99.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHH-HHhhcc
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHA 174 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~ 174 (257)
.++.+|||||||+|.++..+++. +..+|+++|+|+. ++.++.+|+.++++++++||+|++ ++++|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 46789999999999999888774 4569999999865 467788999999999999999888 599999
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEeccCCCcC--c-CCCC--CcCChhHHHHhcccCCcEEEEEe
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHVALSKRAD--K-YSAN--DLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~-y~~~--~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
.++++++++++|+|||||.+++..+.....| . +... .+.+.+++.+++++.||..+...
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 9999999999999999999988654321111 0 1110 23478999999999999876654
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.61 E-value=4.5e-15 Score=121.64 Aligned_cols=121 Identities=20% Similarity=0.261 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
.++++|||+|||+|.++..+++.+. +|+|+|+|+. .+.....|+...+++ ++||+|+++ +++|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 3567999999999999999999764 9999999975 234555666655554 579999885 7887
Q ss_pred cc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCc--CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 174 AL--YPDKFVMEIERTLKPGGVCVLHVALSKRADK--YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 174 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+. +...++++++++|||||++++.......... ......++..++.+.|.. +..+...
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~ 168 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYN 168 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEee
Confidence 74 5568999999999999996665432211111 112345789999999986 4444433
No 26
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.61 E-value=5.5e-15 Score=123.51 Aligned_cols=122 Identities=23% Similarity=0.325 Sum_probs=95.4
Q ss_pred CeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHhhc
Q 025148 112 SKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDH 173 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h 173 (257)
.+|||||||+|..+..+++. +..+|+|+|+|+. .+.+...|..+.+++ ++||+|++ ++++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 37999999999999999875 4579999999965 246777888666665 47999988 69999
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCC----cCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKR----ADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~----~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+.++..+++++.++|||||.+++..+..+. ........+.+..++.+++.+.||..+...+
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 999999999999999999999998753321 1111122455788899999999998766553
No 27
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=1.7e-14 Score=117.13 Aligned_cols=126 Identities=19% Similarity=0.132 Sum_probs=92.8
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...++++.+|||+|||+|..+..++. .+.++|+|+|+++. ++.+..+|+.+.+. +++||+|++
T Consensus 40 ~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~ 118 (187)
T PRK00107 40 APYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTS 118 (187)
T ss_pred HhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEE
Confidence 34455689999999999999998886 35679999999975 36788889888776 778999998
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE----ecCCCCc-eEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK----VDGFGLD-TEVV 243 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~----~~gf~~~-~~vv 243 (257)
+. +.++..++++++++|||||.+++..+.. ....+..+-+..|+..... ..|.+-. -.++
T Consensus 119 ~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (187)
T PRK00107 119 RA---VASLSDLVELCLPLLKPGGRFLALKGRD------------PEEEIAELPKALGGKVEEVIELTLPGLDGERHLVI 183 (187)
T ss_pred cc---ccCHHHHHHHHHHhcCCCeEEEEEeCCC------------hHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEE
Confidence 64 3467789999999999999999886422 2455666666667653322 2354433 3445
Q ss_pred EEc
Q 025148 244 FRK 246 (257)
Q Consensus 244 ~~k 246 (257)
.||
T Consensus 184 ~~~ 186 (187)
T PRK00107 184 IRK 186 (187)
T ss_pred Eec
Confidence 555
No 28
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.59 E-value=8.7e-15 Score=122.88 Aligned_cols=117 Identities=24% Similarity=0.324 Sum_probs=93.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHHH-Hhhccc
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHAL 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~ 175 (257)
..+.+|||+|||+|.++..+++. +..+++|+|+++. ++.++.+|+.+.++++++||+|+++ +++|+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 34578999999999999999886 4567999999965 3578889999999888999999884 999999
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCCcCc----C--CCCCcCChhHHHHhcccC
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKRADK----Y--SANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~----y--~~~~~~~~~~~~~~f~~~ 225 (257)
++.++++++.++|||||.+++.++....... + ....+++...+..++.+.
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS 168 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 9999999999999999999998865432100 0 112445677777777765
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=1.3e-15 Score=119.89 Aligned_cols=91 Identities=30% Similarity=0.493 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-c-CCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKR-V-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~-~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~ 169 (257)
+++.+|||+|||+|.++..+++ . +..+++|+|+|+. ++.+.++|+.+++ ++ ++||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 4578999999999999999994 3 4579999999976 4788999999977 55 789999994
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+++|+.++..+++++.+.||+||.+++..+.
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999998764
No 30
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.58 E-value=8.1e-15 Score=118.27 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=98.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEe
Q 025148 83 WTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEG 151 (257)
Q Consensus 83 w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~ 151 (257)
|+...+......-.+-..+++....+....+|.|+|||+|..+..|+++ +...++|+|-|++ +..+..+
T Consensus 3 W~p~~Yl~F~~eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~a 82 (257)
T COG4106 3 WNPDQYLQFEDERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEA 82 (257)
T ss_pred CCHHHHHHHHHhccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecc
Confidence 4444444444444556677777777778889999999999999999986 7889999999977 5688899
Q ss_pred cCCCCCCCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 152 DFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 152 d~~~~~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
|+.++. ++...|++++| +++++++..+.+..+...|.|||++.+++|+.
T Consensus 83 Dl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 83 DLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred cHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 999886 45679999997 99999999999999999999999999999853
No 31
>PRK08317 hypothetical protein; Provisional
Probab=99.57 E-value=2.4e-14 Score=120.10 Aligned_cols=126 Identities=25% Similarity=0.345 Sum_probs=96.1
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...+.++.+|||+|||+|.++..+++. +.++++|+|+++. .+.+..+|+.+.++++++||+|++
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 93 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRS 93 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEE
Confidence 344567889999999999999999875 3569999999965 356777888888888899999988
Q ss_pred -HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcC-c-------------C--CCCCcCChhHHHHhcccCCcEEE
Q 025148 169 -NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD-K-------------Y--SANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 169 -~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~-------------y--~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
.+++|+.++..+++++.++|||||.+++..+...... . + .....+....+..++.+.||..+
T Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 172 (241)
T PRK08317 94 DRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDI 172 (241)
T ss_pred echhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCce
Confidence 5999999999999999999999999998875321100 0 0 00122344567778888887644
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.57 E-value=8e-15 Score=126.17 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=95.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
+.++.+|||+|||+|..+..+++. + ..+|+|+|+++. ++.+..+|+.++++++++||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 568899999999999988777664 3 347999999865 3567788999999988999999985
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCC-----------cCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR-----------ADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-----------~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+++|..+..+++++++|+|||||++++....... .+.......++..++..++.+.||..+..
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 8999999999999999999999999997432111 00000112346778889999888876543
No 33
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.57 E-value=2.8e-14 Score=118.31 Aligned_cols=123 Identities=12% Similarity=0.112 Sum_probs=89.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEecCCCCCCC-C
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEGDFHRQPFD-D 160 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~d~~~~~~~-~ 160 (257)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+. .+.+.++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5678999999999999999999887 9999999976 134578888877643 3
Q ss_pred CchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc-CCcEEEEE
Q 025148 161 ETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR-SEMVRVRK 232 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~-~~~~~~~~ 232 (257)
+.||.|+. .+++|++ ...+.++.+.+.|||||++++.+-.......-...+.++..++.++|.. .++..+..
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~ 187 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLES 187 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEee
Confidence 57999887 4778886 3345899999999999986666432221111112245789999999975 35555444
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=1.7e-14 Score=125.15 Aligned_cols=120 Identities=19% Similarity=0.248 Sum_probs=89.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhcc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHA 174 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~ 174 (257)
++++|||+|||+|..+..+++.+. +|+|+|+|+. ++.+...|+...++ +++||+|++. +++|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 456999999999999999998764 9999999976 34556677766555 6789999985 88887
Q ss_pred c--cHHHHHHHHHHhccCCcEEEEEeccCCCc--CcCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 175 L--YPDKFVMEIERTLKPGGVCVLHVALSKRA--DKYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 175 ~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
. +...+++++.++|||||++++..+..... ..-.....++..++.++|....+....
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQDWEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCCCEEEEEe
Confidence 5 55678999999999999977755432211 111123557899999999885554443
No 35
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.57 E-value=7.5e-15 Score=118.85 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=86.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
-+++++||+|||.|..+.+|++.|. +|+++|+|+. .+.....|+.+..++ +.||+|++. +++|
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 3567999999999999999999987 9999999975 456788898888775 579999985 7877
Q ss_pred cc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCc--CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 174 AL--YPDKFVMEIERTLKPGGVCVLHVALSKRADK--YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 174 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+. ...++++.+...++|||++++.+........ -.....+.+.++...|...++....+.
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~E~ 170 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYNED 170 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEEcc
Confidence 76 3456889999999999998886543222111 122355688999999997666554443
No 36
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.57 E-value=3.3e-14 Score=119.49 Aligned_cols=139 Identities=24% Similarity=0.239 Sum_probs=106.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
..++.+|||+|||+|..+..+++.. ..+++++|+++. .+.+..+|+.+.++++++||+|++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 3467899999999999999998864 479999999854 356778888888877789999987
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcC-------------------cCCC------------CCcCChhH
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD-------------------KYSA------------NDLFSVKP 217 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------------------~y~~------------~~~~~~~~ 217 (257)
.+++|..++..+++++.+.|+|||.+++......... .+.. ..+++..+
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE 208 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence 5899999999999999999999999887643211100 0000 13457788
Q ss_pred HHHhcccCCcEEEEEec-CCCCceEEEEEc
Q 025148 218 LVKLFKRSEMVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 218 ~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k 246 (257)
+.+++.++||..+.... ++++...++.+|
T Consensus 209 ~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 209 LAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 99999999998777766 666655666555
No 37
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.57 E-value=1.8e-15 Score=112.51 Aligned_cols=88 Identities=27% Similarity=0.405 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC----------------CCcEEEecC-CCCCCCCCchhHHHH-H-
Q 025148 110 NESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY----------------PPLVIEGDF-HRQPFDDETFDFEFS-N- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~----------------~~~~~~~d~-~~~~~~~~~fD~V~~-~- 169 (257)
++.+|||+|||+|.++..+++ .+..+|+|+|+|+. ++.+.++|+ ...... +.||+|++ .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999 46679999999966 677899999 444433 45999887 4
Q ss_pred Hhhcc---ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHA---LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~---~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+++++ .+..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 23333 466789999999999999999976
No 38
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.54 E-value=2.2e-14 Score=118.69 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=75.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHHHH-h
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFSNV-F 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~-l 171 (257)
+++++.+|||+|||+|.++..+++. ..+.|+|+|+++. ++.++++|+.+.+ +.+++||+|+|+. .
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 4578889999999999999999886 2368999999963 5778999998853 6678999999863 3
Q ss_pred hcccc-----------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 172 DHALY-----------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 172 ~h~~~-----------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++..+ .+.+++++.++|||||.+++.+..
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 33222 146889999999999999997753
No 39
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.53 E-value=8.6e-15 Score=125.62 Aligned_cols=130 Identities=25% Similarity=0.231 Sum_probs=86.3
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDE 161 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~ 161 (257)
.+..++.+..+++|.+|||||||.|.++..+++..+++|+|+.+|++ .+.+...|..+++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--- 126 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---
Confidence 34444445667999999999999999999999974469999999966 35677788777653
Q ss_pred chhHHHH-HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCC-------------cCc--CCCCCcCChhHHHHhcc
Q 025148 162 TFDFEFS-NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKR-------------ADK--YSANDLFSVKPLVKLFK 223 (257)
Q Consensus 162 ~fD~V~~-~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------~~~--y~~~~~~~~~~~~~~f~ 223 (257)
+||.|+| .++||+ .+...+++++.++|||||.++++...... ..+ |....+-+..++...+.
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~ 206 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAE 206 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHH
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHh
Confidence 8999999 799999 46789999999999999999987532110 001 22224446777777777
Q ss_pred cCCcEEE
Q 025148 224 RSEMVRV 230 (257)
Q Consensus 224 ~~~~~~~ 230 (257)
+.++...
T Consensus 207 ~~~l~v~ 213 (273)
T PF02353_consen 207 DAGLEVE 213 (273)
T ss_dssp HTT-EEE
T ss_pred cCCEEEE
Confidence 7887644
No 40
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.53 E-value=6.4e-14 Score=116.47 Aligned_cols=137 Identities=23% Similarity=0.246 Sum_probs=103.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCC--CcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGV--SDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
.++.+|||+|||+|..+..+++... .+++++|+++. .+.+..+|+.+.++++++||+|++ .+++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 4678999999999999999988643 58999999854 357788888888887889999988 4899
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEeccCCC-------------------cCcCCC------------CCcCChhHHHHh
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHVALSKR-------------------ADKYSA------------NDLFSVKPLVKL 221 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------------~~~y~~------------~~~~~~~~~~~~ 221 (257)
|..++..+++++.+.|+|||.+++....... ...+.. ..+++..++..+
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAM 197 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999986432110 000000 124477889999
Q ss_pred cccCCcEEEEEec-CCCCceEEEEE
Q 025148 222 FKRSEMVRVRKVD-GFGLDTEVVFR 245 (257)
Q Consensus 222 f~~~~~~~~~~~~-gf~~~~~vv~~ 245 (257)
+.+.||..+.... +++....++.|
T Consensus 198 l~~aGf~~~~~~~~~~~~~~~~~~~ 222 (223)
T TIGR01934 198 LKEAGFEEVRYRSLTFGVAAIHVGK 222 (223)
T ss_pred HHHcCCccceeeeeecceeeEEEec
Confidence 9999998665554 44544555554
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=1.4e-13 Score=117.08 Aligned_cols=129 Identities=26% Similarity=0.245 Sum_probs=94.2
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCch
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~f 163 (257)
........+++|++|||||||.|.++.++++.-+++|+|+++|++ ++.+...|..+.. +.|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~f 138 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPF 138 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---ccc
Confidence 333445667999999999999999999999975569999999976 3455556655543 459
Q ss_pred hHHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEeccCCC-cC--------cCC--CCCcCChhHHHHhcccCCcEE
Q 025148 164 DFEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHVALSKR-AD--------KYS--ANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 164 D~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~--------~y~--~~~~~~~~~~~~~f~~~~~~~ 229 (257)
|-|+| ..+||+.. ...+++.++++|+|||.+++++-.... .+ .|- ...+-+...+.+...+.++..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v 218 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVV 218 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEE
Confidence 99999 79999985 889999999999999999988632211 11 111 112335566777777777754
Q ss_pred EE
Q 025148 230 VR 231 (257)
Q Consensus 230 ~~ 231 (257)
..
T Consensus 219 ~~ 220 (283)
T COG2230 219 LD 220 (283)
T ss_pred eh
Confidence 43
No 42
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.51 E-value=2.5e-13 Score=109.90 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=81.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
++.+|||+|||+|..+..++.. +..+|+|+|+|+. ++.++++|+.+++ .+++||+|+|+.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRAL-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehhh--
Confidence 3789999999999999988765 4568999999975 4678888988864 3578999999764
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc---CCcEEEEEec
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR---SEMVRVRKVD 234 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~---~~~~~~~~~~ 234 (257)
.+....++.+.++|||||.+++..... ...++..+.++ .|+..+....
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~~~~------------~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYKGKK------------YLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEcCCC------------cHHHHHHHHHhhhhcCceEeeccc
Confidence 345678888999999999999875311 23444444444 5666555444
No 43
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.51 E-value=2.5e-14 Score=114.69 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=78.1
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCc-EEEecCCCCC-CCCCchhHHHHH-Hhhc
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPL-VIEGDFHRQP-FDDETFDFEFSN-VFDH 173 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~-~~~~d~~~~~-~~~~~fD~V~~~-~l~h 173 (257)
..+||||||+|..-.++...+.++|+++|.++. .+. ++.++.++++ ++|+++|.|++. +++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 467999999999999888777789999999977 344 8899999998 899999999996 9999
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..++.+.++++.|+|+|||++++..
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999999999999999999999864
No 44
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.50 E-value=6.5e-15 Score=107.30 Aligned_cols=80 Identities=29% Similarity=0.332 Sum_probs=51.4
Q ss_pred EEECCCCCHHHHHHHHc-CCCcEEEecCCCCCC---------------cEEEecCCCCC--CCCCchhHHHH-HHhhccc
Q 025148 115 LCIGARVGQEVEALKRV-GVSDSVGIDLVPYPP---------------LVIEGDFHRQP--FDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 115 LDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~---------------~~~~~d~~~~~--~~~~~fD~V~~-~~l~h~~ 175 (257)
||||||+|.++..+.+. +..+++|+|+|+..+ .....+..+.. ...++||+|++ ++++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999886 567999999998832 12222222221 11258999988 6999999
Q ss_pred cHHHHHHHHHHhccCCcEE
Q 025148 176 YPDKFVMEIERTLKPGGVC 194 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l 194 (257)
++.++++.+++.|||||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 45
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.50 E-value=2.8e-13 Score=112.76 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=88.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEecCCCCCCCC
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~d~~~~~~~~ 160 (257)
..++++|||+|||.|..+..|++.|. +|+|+|+|+. .+.+.++|+.+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 35678999999999999999999886 9999999966 1345678888775432
Q ss_pred -CchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc-CCcEEEEEe
Q 025148 161 -ETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR-SEMVRVRKV 233 (257)
Q Consensus 161 -~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~-~~~~~~~~~ 233 (257)
..||+|+. .+++|++ ...+.++.+.++|||||.+++.+-.......-...+.++..++.++|.. .++..+...
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~ 191 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQ 191 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeec
Confidence 57999887 4778886 3457899999999999975543321111000111245689999999986 466555543
No 46
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.49 E-value=8.5e-14 Score=117.59 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=93.3
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
...++.+|||+|||+|..+..+++. +.++++|+|+|+. ++.++++|+.+.+++ .+|+|+
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEe
Confidence 3457789999999999999988874 4679999999965 347788899888765 479888
Q ss_pred HH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCC-----------------cCcCC-------------CCCcCC
Q 025148 168 SN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKR-----------------ADKYS-------------ANDLFS 214 (257)
Q Consensus 168 ~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~-----------------~~~y~-------------~~~~~~ 214 (257)
++ +++|+. ++.+++++++|+|||||.+++..+.... ...+. ....++
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 207 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDS 207 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC
Confidence 84 888886 4578999999999999999998542110 01111 113468
Q ss_pred hhHHHHhcccCCcEEEEE
Q 025148 215 VKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 215 ~~~~~~~f~~~~~~~~~~ 232 (257)
.+++.++++++||..+..
T Consensus 208 ~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 208 IETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 888888999998876544
No 47
>PRK04266 fibrillarin; Provisional
Probab=99.48 E-value=4.4e-13 Score=112.03 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=86.7
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCC----CCCCCchhHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQ----PFDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~----~~~~~~fD~V~ 167 (257)
..++++.+|||+|||+|.++..+++. +.++|+|+|+++. ++..+.+|..+. ++. ++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence 44578899999999999999999885 4458999999973 467777887642 222 4589887
Q ss_pred HHHhhccccH---HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 168 SNVFDHALYP---DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 168 ~~~l~h~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
++ +.++ ..++++++++|||||.+++.++.....+....... .++..+.+++.||..+...+
T Consensus 147 ~d----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~--~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 147 QD----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEI--FKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred EC----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHH--HHHHHHHHHHcCCeEEEEEc
Confidence 54 2233 34689999999999999997654322222222111 13455889999998887776
No 48
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.48 E-value=9.2e-14 Score=117.99 Aligned_cols=89 Identities=22% Similarity=0.339 Sum_probs=73.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH---cCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKR---VGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
+.++.+|||+|||+|..+..+++ .+..+++|+|+|+. .+.+.++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 46788999999999999988876 25679999999975 357788888887765 4899888
Q ss_pred H-Hhhcccc--HHHHHHHHHHhccCCcEEEEEe
Q 025148 169 N-VFDHALY--PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~-~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+ +++|+.+ ...++++++++|||||.+++..
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5 8888864 4578999999999999999975
No 49
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.48 E-value=3.6e-13 Score=110.26 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=93.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCC-C-CCCCCchhHHHHH-Hhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHR-Q-PFDDETFDFEFSN-VFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~-~-~~~~~~fD~V~~~-~l~h~~~ 176 (257)
++++++|||+|||+|.++..+++....+++|+|+++. .+.++.+|+.+ + ++++++||+|+++ +++|+.+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 3567899999999999999998765568999999965 45678888865 4 4778899999884 9999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCC---------------c----CcCC---CCCcCChhHHHHhcccCCcEEEEEe
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKR---------------A----DKYS---ANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------~----~~y~---~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+.++++++.|+++ .+++.+|+... . ..+. ...+++.+++.+++++.|+..+...
T Consensus 91 ~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 91 PEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred HHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 9999999988765 44555543210 0 0111 1246799999999999999876654
No 50
>PTZ00146 fibrillarin; Provisional
Probab=99.46 E-value=2e-13 Score=116.94 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC-------------CCcEEEe
Q 025148 87 DWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY-------------PPLVIEG 151 (257)
Q Consensus 87 ~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~-------------~~~~~~~ 151 (257)
-|......++..+..=+....++++++|||+|||+|.++..+++. + ...|+++|+++. ++..+.+
T Consensus 109 ~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~ 188 (293)
T PTZ00146 109 VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIE 188 (293)
T ss_pred eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEEC
Confidence 344444444333322223344688999999999999999999986 2 458999999963 5667778
Q ss_pred cCCCC---CCCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 152 DFHRQ---PFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 152 d~~~~---~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
|+... ....++||+|++++. ...+...++.++.+.|||||.++|.............+..|+ +++ +.+++.+|.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva-~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~-~ev-~~L~~~GF~ 265 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA-QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA-SEV-QKLKKEGLK 265 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC-CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHH-HHH-HHHHHcCCc
Confidence 87542 223457999999764 233444566799999999999999653222111121112222 233 778888888
Q ss_pred EEEEec--CCCCc
Q 025148 229 RVRKVD--GFGLD 239 (257)
Q Consensus 229 ~~~~~~--gf~~~ 239 (257)
.+..++ -|..+
T Consensus 266 ~~e~v~L~Py~~~ 278 (293)
T PTZ00146 266 PKEQLTLEPFERD 278 (293)
T ss_pred eEEEEecCCccCC
Confidence 777665 45544
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.46 E-value=3.1e-13 Score=125.12 Aligned_cols=121 Identities=16% Similarity=0.217 Sum_probs=91.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCC--CCCCCCCchhHHHHH-Hhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFH--RQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~--~~~~~~~~fD~V~~~-~l~ 172 (257)
.++.+|||+|||+|.++..+++.. .+|+|+|+++. ++.++++|+. ..++++++||+|+|+ +++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 456799999999999999999875 49999999976 3457778885 457788899999995 899
Q ss_pred cccc--HHHHHHHHHHhccCCcEEEEEeccCCCc---Cc-CCCCCcCChhHHHHhcccCCcEEE
Q 025148 173 HALY--PDKFVMEIERTLKPGGVCVLHVALSKRA---DK-YSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 173 h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~---~~-y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
|+.+ ..+++++++|+|||||++++........ .. .....+.....+.++|.++++...
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 9986 4689999999999999999875322111 11 122233467788889988876543
No 52
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.45 E-value=2.1e-13 Score=117.40 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=74.1
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHc-C---CCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRV-G---VSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
+.+.....+.+|||+|||+|.++..+++. + ..+++|+|+|+. ++.+..+|..++|+++++||+|++
T Consensus 78 l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 78 LAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred HHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEE
Confidence 33333345678999999999999988764 2 247999999976 467889999999999999999987
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCC
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
... ...++++.|+|||||.+++.+|...
T Consensus 158 ~~~------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 158 IYA------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred ecC------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 421 1346899999999999999887654
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=6.1e-13 Score=107.48 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=89.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
.++.+|||+|||+|.++..+++.+. +|+|+|+++. .+.+..+|..+.. .++||+|+++ .+++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 3467899999999999999998765 8999999977 2455677765543 4589999986 4443
Q ss_pred ccc---------------------HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 174 ALY---------------------PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 174 ~~~---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
..+ ..++++++.++|||||.+++..+... ...++..++++.|+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------GEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------ChHHHHHHHHhCCCeEEEE
Confidence 332 34678999999999999998764322 3667888889989865444
Q ss_pred ec-CCCCceEEEE
Q 025148 233 VD-GFGLDTEVVF 244 (257)
Q Consensus 233 ~~-gf~~~~~vv~ 244 (257)
.. |+-+.+..+.
T Consensus 164 ~~~~~~~~~~~~~ 176 (179)
T TIGR00537 164 AERGLFFEELFAI 176 (179)
T ss_pred EEeecCceEEEEE
Confidence 43 6655544444
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.45 E-value=2e-13 Score=122.69 Aligned_cols=98 Identities=24% Similarity=0.307 Sum_probs=77.1
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHH
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
+..++....++++.+|||||||+|.++..+++...++|+|+|+|++ .+.+...|..++ +++||.|
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEE
Confidence 3334444456788999999999999999998865569999999977 234455555543 4689999
Q ss_pred HH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ .+++|+. ++..+++++.++|||||.+++++.
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 88 5999985 457899999999999999999864
No 55
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.44 E-value=3.9e-13 Score=110.86 Aligned_cols=88 Identities=25% Similarity=0.397 Sum_probs=71.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
+.++.+|||+|||+|..+..+++. +..+++|+|+|+. .+.+..+|+.+ ++++++||+|++ ++++|+.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 356789999999999999999886 5679999999976 35678888888 888999999998 5999995
Q ss_pred --cHHHHHHHHHHhccCCcEEEEEe
Q 025148 176 --YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 176 --~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+..++++++.|++ ++.+++..
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 3467888999987 45666654
No 56
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.43 E-value=2.9e-13 Score=115.91 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=71.8
Q ss_pred CCCCeEEEECCCCCHH----HHHHHHc-C-----CCcEEEecCCCC----------------------------------
Q 025148 109 SNESKALCIGARVGQE----VEALKRV-G-----VSDSVGIDLVPY---------------------------------- 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~----~~~l~~~-~-----~~~v~gvD~s~~---------------------------------- 144 (257)
.++.+|+|+|||+|.. +..+++. + ..+|+|+|+|+.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3457999999999973 4445443 1 358999999964
Q ss_pred --------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccH--HHHHHHHHHhccCCcEEEEEe
Q 025148 145 --------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP--DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 --------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++.+.++|+.+.++++++||+|+| ++++|+.++ .+++++++++|||||++++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 245677888888777889999999 799999744 479999999999999999964
No 57
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.43 E-value=1.1e-12 Score=110.35 Aligned_cols=125 Identities=17% Similarity=0.204 Sum_probs=94.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCC-CCCCchhHHHH-HHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQP-FDDETFDFEFS-NVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~-~~~~~fD~V~~-~~l 171 (257)
..++.+|||||||+|.++..+.+.+ .+++++|+++. .+.+...+..+.+ ..+++||+|++ +++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 3567899999999999999988865 58999999966 1345555555543 34578999887 599
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCc------------------CcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRA------------------DKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~------------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+|..++..+++.+.+.|+|||.+++..+..... .......+++..++..++.+.|+..+...
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 999999999999999999999999987532110 00011245688899999999999876554
No 58
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.41 E-value=2.8e-12 Score=107.03 Aligned_cols=122 Identities=18% Similarity=0.222 Sum_probs=92.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCC-CCchhHHHH-HHhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFD-DETFDFEFS-NVFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~-~~~fD~V~~-~~l~ 172 (257)
.+.+|||+|||+|.++..+++.+ .+++|+|+++. .+.+...|+.+.+.. .++||+|++ ++++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 47799999999999999888865 47999999864 244556666665543 378999988 5999
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEeccCCC------------cCcC------CCCCcCChhHHHHhcccCCcEEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHVALSKR------------ADKY------SANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~------------~~~y------~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
|+.++..+++++.++|+|||.+++..++... ...+ ....+++..++.+++.+.|+..+..
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 9999999999999999999999988754321 0000 0113457788999999999876543
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.41 E-value=1.8e-13 Score=112.73 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=82.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecC-CCCC--CCCCchhHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDF-HRQP--FDDETFDFEFSNV 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~-~~~~--~~~~~fD~V~~~~ 170 (257)
++.+|||+|||+|..+..+++. +..+|+|+|+|+. ++.++++|+ ..++ +++++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5789999999999999999875 5568999999975 456788888 6665 7788999987752
Q ss_pred -hhcc------c--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEE
Q 025148 171 -FDHA------L--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 171 -l~h~------~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
..+. . ....+++++.++|||||.+++.++... ....+.+.+.+.|+...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~-----------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG-----------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH-----------HHHHHHHHHHhCccccc
Confidence 2111 1 146789999999999999999875433 24456666777776433
No 60
>PRK06202 hypothetical protein; Provisional
Probab=99.40 E-value=1.4e-12 Score=109.68 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=83.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc----C-CCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 109 SNESKALCIGARVGQEVEALKRV----G-VSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+. ++.+...+...++.++++||+|+|+ +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46679999999999998888752 2 358999999976 2455666767777778899999995 9
Q ss_pred hhccccH--HHHHHHHHHhccCCcEEEEEeccCCC-------------c-CcC-------CCCCcCChhHHHHhcccCCc
Q 025148 171 FDHALYP--DKFVMEIERTLKPGGVCVLHVALSKR-------------A-DKY-------SANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 171 l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~-------------~-~~y-------~~~~~~~~~~~~~~f~~~~~ 227 (257)
++|+.++ .++++++.|+++ |.+++....... . ..+ +....|+.+++.+++++ ||
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 9999875 469999999998 444444311100 0 111 11256788888888888 77
Q ss_pred E
Q 025148 228 V 228 (257)
Q Consensus 228 ~ 228 (257)
.
T Consensus 216 ~ 216 (232)
T PRK06202 216 R 216 (232)
T ss_pred e
Confidence 5
No 61
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.2e-12 Score=112.21 Aligned_cols=128 Identities=23% Similarity=0.337 Sum_probs=90.2
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCc--EEEecCCCCCCC-CCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPL--VIEGDFHRQPFD-DETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~--~~~~d~~~~~~~-~~~fD~V~~~ 169 (257)
+...+++.+|||+|||+|.++...++.|..+|+|+|+++. .+. ....-......+ .++||+|++|
T Consensus 157 e~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 157 EKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred HHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh
Confidence 4445689999999999999999999999889999999976 122 001111111222 3589999999
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
.+-++. .++..++.+.|||||+++++--..+ ..+.+...+.+.||.......--+ +..++++|
T Consensus 237 ILA~vl--~~La~~~~~~lkpgg~lIlSGIl~~-----------q~~~V~~a~~~~gf~v~~~~~~~e-W~~i~~kr 299 (300)
T COG2264 237 ILAEVL--VELAPDIKRLLKPGGRLILSGILED-----------QAESVAEAYEQAGFEVVEVLEREE-WVAIVGKR 299 (300)
T ss_pred hhHHHH--HHHHHHHHHHcCCCceEEEEeehHh-----------HHHHHHHHHHhCCCeEeEEEecCC-EEEEEEEc
Confidence 765432 2677899999999999999863322 366788888888887666554322 34566665
No 62
>PLN03075 nicotianamine synthase; Provisional
Probab=99.40 E-value=4.3e-12 Score=109.13 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=91.3
Q ss_pred CCCCeEEEECCCCCHHHHH-HH-Hc-CCCcEEEecCCCC-----------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEA-LK-RV-GVSDSVGIDLVPY-----------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~-l~-~~-~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
..+.+|+|||||.|.++.. ++ .. +.++++|+|++++ ++.+..+|+.+..-..+.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 4678999999998855433 33 33 5678999999965 478888988876434578999999
Q ss_pred HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec--CCCCceEEEE
Q 025148 169 NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD--GFGLDTEVVF 244 (257)
Q Consensus 169 ~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~--gf~~~~~vv~ 244 (257)
.+++++ .++.++++.+.+.|+|||.+++.....-+. .+|..-+.. ..+ ||....... +-..-++|+.
T Consensus 202 ~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~------~LYp~v~~~-~~~--gf~~~~~~~P~~~v~Nsvi~~ 272 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARA------FLYPVVDPC-DLR--GFEVLSVFHPTDEVINSVIIA 272 (296)
T ss_pred ecccccccccHHHHHHHHHHhcCCCcEEEEecccchHh------hcCCCCChh-hCC--CeEEEEEECCCCCceeeEEEE
Confidence 988887 589999999999999999999987422111 112111111 112 777777665 3232367777
Q ss_pred Ecccc
Q 025148 245 RKNAK 249 (257)
Q Consensus 245 ~k~~~ 249 (257)
||++.
T Consensus 273 r~~~~ 277 (296)
T PLN03075 273 RKPGG 277 (296)
T ss_pred EeecC
Confidence 87653
No 63
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.39 E-value=4.8e-12 Score=99.73 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=89.9
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCC-cEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 111 ESKALCIGARVGQEVEALKRVGVS-DSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
..+|||+|||+|.++..|++.+.. ..+|+|.|+. .+.+.+.|+.+..+..+.||+|+- .++.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 349999999999999999998643 4999999976 378899999988888888999866 4443
Q ss_pred ccc--------cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 173 HAL--------YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 173 h~~--------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.+. .+...+..+.+.|+|||+++|..++. +.+++...|...+|+....+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~------------T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF------------TKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc------------cHHHHHHHHhcCCeEEEEeec
Confidence 332 12335678899999999999988754 688999999999998877764
No 64
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.38 E-value=8.1e-14 Score=101.98 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=65.8
Q ss_pred EEEECCCCCHHHHHHHHcC----CCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-H-Hhhc
Q 025148 114 ALCIGARVGQEVEALKRVG----VSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-N-VFDH 173 (257)
Q Consensus 114 vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~-~l~h 173 (257)
|||+|||+|..+..+.+.. ..+++|+|+|+. .+.+.++|+.++++.+++||+|++ . +++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998752 369999999966 568999999999988899999988 4 6999
Q ss_pred ccc--HHHHHHHHHHhccCCc
Q 025148 174 ALY--PDKFVMEIERTLKPGG 192 (257)
Q Consensus 174 ~~~--~~~~l~~~~r~LkpgG 192 (257)
+.+ .+++++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 773 4578899999999998
No 65
>PRK06922 hypothetical protein; Provisional
Probab=99.38 E-value=4.5e-13 Score=125.13 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCC--CCCCchhHHHHH-H
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQP--FDDETFDFEFSN-V 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~--~~~~~fD~V~~~-~ 170 (257)
.++++|||+|||+|..+..+++. +..+++|+|+|+. ++.++++|..+++ +++++||+|+++ +
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 46789999999999999888874 6679999999975 2356778888877 788999999875 7
Q ss_pred hhcc-------------ccHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHA-------------LYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~-------------~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+||+ .++.+++++++++|||||.+++...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7765 2567899999999999999999764
No 66
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.36 E-value=3e-12 Score=96.47 Aligned_cols=89 Identities=24% Similarity=0.188 Sum_probs=68.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCC-CCCCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHR-QPFDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~-~~~~~~~fD~V~~~ 169 (257)
.+.++.+|||+|||+|.++..+++. +..+|+|+|+++. ++.+..+|... .+...++||+|++.
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 3456789999999999999999885 5579999999865 34556666554 23334689998774
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..++ ..++++++++.|||||.+++.+
T Consensus 96 ~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 3332 3588999999999999999875
No 67
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.36 E-value=5.2e-12 Score=102.84 Aligned_cols=95 Identities=26% Similarity=0.348 Sum_probs=72.8
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFSNV 170 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~ 170 (257)
...+.++.+|||+|||+|.++..+++. +.++|+|+|+|+. ++.++++|+.+.+ +++++||+|+++.
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence 344578899999999999999888775 3458999999985 4667778876643 4567899998852
Q ss_pred ---------hhccc---cHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 ---------FDHAL---YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 ---------l~h~~---~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++|.. +.+.+++++.++|+|||.+++...
T Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 22221 236789999999999999999764
No 68
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.33 E-value=4.5e-12 Score=109.56 Aligned_cols=123 Identities=21% Similarity=0.328 Sum_probs=85.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
..++.+|||+|||+|.++...++.|..+|+|+|+++. ...+.... ......++||+|++|.+.+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCHH
Confidence 5678899999999999999999998889999999987 11222222 2233458899999884432
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcc
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKN 247 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~ 247 (257)
+. ..++..+.+.|+|||+++++--... ....+.+.|++ |+.......--+ +..++++|+
T Consensus 237 vL--~~l~~~~~~~l~~~G~lIlSGIl~~-----------~~~~v~~a~~~-g~~~~~~~~~~~-W~~l~~~Kk 295 (295)
T PF06325_consen 237 VL--LELAPDIASLLKPGGYLILSGILEE-----------QEDEVIEAYKQ-GFELVEEREEGE-WVALVFKKK 295 (295)
T ss_dssp HH--HHHHHHCHHHEEEEEEEEEEEEEGG-----------GHHHHHHHHHT-TEEEEEEEEETT-EEEEEEEE-
T ss_pred HH--HHHHHHHHHhhCCCCEEEEccccHH-----------HHHHHHHHHHC-CCEEEEEEEECC-EEEEEEEeC
Confidence 21 2577889999999999999853222 46778888876 887665554222 345777764
No 69
>PRK14967 putative methyltransferase; Provisional
Probab=99.33 E-value=6e-12 Score=105.26 Aligned_cols=91 Identities=22% Similarity=0.260 Sum_probs=69.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH--Hh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN--VF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~--~l 171 (257)
+.++.+|||+|||+|.++..+++.+..+++++|+++. .+.+..+|+.+. +++++||+|++| ..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCC
Confidence 4667899999999999999998876559999999975 245667777653 456789999987 22
Q ss_pred hccc--------------------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 172 DHAL--------------------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 172 ~h~~--------------------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+.. ....+++++.++|||||.+++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1110 134678899999999999998654
No 70
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.32 E-value=6e-12 Score=107.08 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=83.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEE-----ecC---CCCCCCCCchhHHHHHHhhccccHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIE-----GDF---HRQPFDDETFDFEFSNVFDHALYPDK 179 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~-----~d~---~~~~~~~~~fD~V~~~~l~h~~~~~~ 179 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+|+..+.... .+. ..++..+.+||+|++|...+ ....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~--~~~~ 194 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILAN--PLLE 194 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHH--HHHH
Confidence 4578899999999999999888877657999999987221100 001 11122223799998874322 1346
Q ss_pred HHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 180 FVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
+++++.++|||||.++++..... ....+...+.+.||........-+ ...++++|
T Consensus 195 l~~~~~~~LkpgG~lilsgi~~~-----------~~~~v~~~l~~~Gf~~~~~~~~~~-W~~~~~~~ 249 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGILEE-----------QADEVLEAYEEAGFTLDEVLERGE-WVALVGKK 249 (250)
T ss_pred HHHHHHHhcCCCcEEEEEECcHh-----------hHHHHHHHHHHCCCEEEEEEEeCC-EEEEEEEe
Confidence 78999999999999999853221 466788889999987665544222 23455554
No 71
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.32 E-value=7.7e-12 Score=104.24 Aligned_cols=121 Identities=14% Similarity=0.048 Sum_probs=87.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+..+|+.+.+ ++||+|++ +++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l 129 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVL 129 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHH
Confidence 4678999999999999999988654 9999999966 3457777877665 78999887 688
Q ss_pred hccc--cHHHHHHHHHHhccCCcEEEEEeccCC--------CcC----cCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 172 DHAL--YPDKFVMEIERTLKPGGVCVLHVALSK--------RAD----KYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 172 ~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~--------~~~----~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+|+. +...+++++.+++++++++.+...... ..+ .......++..++.+++++.||..+...
T Consensus 130 ~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 130 IHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 8875 456789999999987766555321100 000 0111245588999999999998766554
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=6.6e-12 Score=103.70 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=67.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
+.++.+|||+|||+|..+..+++. + .++|+++|+++. .+.+..+|..+....+++||+|+++
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 467889999999999999988875 2 458999999965 2567788887654456789999885
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+++|++ +++.+.|||||++++.+
T Consensus 150 ~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh------HHHHHhcCcCcEEEEEE
Confidence 666554 47889999999998865
No 73
>PRK14968 putative methyltransferase; Provisional
Probab=99.29 E-value=2e-11 Score=98.92 Aligned_cols=110 Identities=25% Similarity=0.394 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------C--CcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------P--PLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~--~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+. . +.+..+|..+ ++.+++||+|+++ .
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 467899999999999999999874 69999999976 1 4566677655 3445589998875 2
Q ss_pred hhc---------------------cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 171 FDH---------------------ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 171 l~h---------------------~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
+.+ ......+++++.++|||||.+++.++... ..+.+..++.+.|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~-----------~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT-----------GEDEVLEYLEKLGFEA 168 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC-----------CHHHHHHHHHHCCCee
Confidence 111 11245688999999999999988775321 3567888999999865
Q ss_pred EE
Q 025148 230 VR 231 (257)
Q Consensus 230 ~~ 231 (257)
..
T Consensus 169 ~~ 170 (188)
T PRK14968 169 EV 170 (188)
T ss_pred ee
Confidence 44
No 74
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.29 E-value=6.9e-12 Score=108.84 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC----------------CcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP----------------PLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+++.. +.+...+. .+..+++||+|++|.+
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecC
Confidence 45678999999999999999888776799999999761 22233332 2334678999999743
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
.+ ...+++.++.++|||||.++++..... ...++...+++.
T Consensus 235 ~~--~l~~ll~~~~~~LkpgG~li~sgi~~~-----------~~~~v~~~~~~~ 275 (288)
T TIGR00406 235 AE--VIKELYPQFSRLVKPGGWLILSGILET-----------QAQSVCDAYEQG 275 (288)
T ss_pred HH--HHHHHHHHHHHHcCCCcEEEEEeCcHh-----------HHHHHHHHHHcc
Confidence 22 234788999999999999999764322 355666666654
No 75
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.29 E-value=1.5e-11 Score=100.08 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=78.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
+.++.+|||+|||+|.++..+++. +..+|+++|+++. .+.+..+|.. .++ .++||+|+++ .
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC
Confidence 457789999999999999998875 4569999999976 2455566653 233 3579999875 3
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
.+ ....+++++.+.|||||++++...... +..++.+++++.|+..+
T Consensus 107 ~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~~-----------~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 107 GG---NLTAIIDWSLAHLHPGGRLVLTFILLE-----------NLHSALAHLEKCGVSEL 152 (187)
T ss_pred cc---CHHHHHHHHHHhcCCCeEEEEEEecHh-----------hHHHHHHHHHHCCCCcc
Confidence 33 345788999999999999998753221 45677788888887443
No 76
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.29 E-value=2.3e-11 Score=106.51 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=87.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
.+.++.+|||||||+|.++..+++. +..+++++|..+. ++.++.+|+.+.++++ +|+|++ +
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh
Confidence 3567789999999999999999885 6679999997311 3567888988766654 698755 6
Q ss_pred HhhccccH--HHHHHHHHHhccCCcEEEEEecc--CCCcCcC--------------CCCCcCChhHHHHhcccCCcEEEE
Q 025148 170 VFDHALYP--DKFVMEIERTLKPGGVCVLHVAL--SKRADKY--------------SANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 170 ~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~--~~~~~~y--------------~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++++..+. .+++++++++|||||++++.... ......+ ......+.+++.+++++.||..+.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 88877543 47899999999999999887431 1111100 011223467788888888887664
Q ss_pred E
Q 025148 232 K 232 (257)
Q Consensus 232 ~ 232 (257)
.
T Consensus 304 ~ 304 (306)
T TIGR02716 304 M 304 (306)
T ss_pred e
Confidence 3
No 77
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.28 E-value=2.6e-12 Score=105.23 Aligned_cols=91 Identities=22% Similarity=0.238 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCC---CCCCchhHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP---FDDETFDFEFSNV 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~---~~~~~fD~V~~~~ 170 (257)
...++||||||+|.++..+++. +..+++|+|+++. ++.++++|+.+++ ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999885 6679999999965 4677888887643 4566889887652
Q ss_pred -hhcccc--------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 171 -FDHALY--------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 171 -l~h~~~--------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
..+... ...+++++.++|||||.+++.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 111111 156899999999999999998743
No 78
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.27 E-value=2.4e-11 Score=98.42 Aligned_cols=129 Identities=23% Similarity=0.256 Sum_probs=84.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHH-HHHHhhccccHHHHHHHHHHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFE-FSNVFDHALYPDKFVMEIERT 187 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V-~~~~l~h~~~~~~~l~~~~r~ 187 (257)
.++..|.|+|||.+.++..+.+ + .+|...|+...+..+..+|+.+.|++++++|++ +|-+|.. .|...++.|..|+
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~-~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~Rv 147 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-K-HKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRV 147 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-----EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHhccc-C-ceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHhe
Confidence 3456999999999999977543 2 379999999999999999999999999999995 4434432 3566899999999
Q ss_pred ccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcccc
Q 025148 188 LKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAK 249 (257)
Q Consensus 188 LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~~ 249 (257)
|||||.|.|....++ +-+.+.+.+.+++.||........-..-+...|+|...
T Consensus 148 LK~~G~L~IAEV~SR---------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 148 LKPGGILKIAEVKSR---------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRK 200 (219)
T ss_dssp EEEEEEEEEEEEGGG----------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SS
T ss_pred eccCcEEEEEEeccc---------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCc
Confidence 999999999764332 22578888999999998777655434345677777553
No 79
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.27 E-value=2.3e-11 Score=97.54 Aligned_cols=89 Identities=26% Similarity=0.375 Sum_probs=68.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
++++|||+|||+|.++..+++. +..+|+++|+++. .+.+...|..+. .++++||+|+|| -++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccchh
Confidence 6789999999999999999986 4447999999976 255777777653 347889999998 222
Q ss_pred ccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 173 HAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 173 h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.-. -.++++++..+.|||||.+++...
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 221 246788999999999999987653
No 80
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.26 E-value=1.9e-11 Score=100.36 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=80.7
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-CCCCCchhH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-PFDDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~~~~~~fD~ 165 (257)
...+.++.+|||+|||+|.++..++.. +..+|+++|+++. ++.++.+|..+. +..++.||.
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 334578899999999999999988764 3468999999965 345666777553 223467999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
|+++. ...++..+++++.+.|||||.+++.....+ +.......+++.|+
T Consensus 115 V~~~~--~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~-----------~~~~~~~~l~~~g~ 163 (198)
T PRK00377 115 IFIGG--GSEKLKEIISASWEIIKKGGRIVIDAILLE-----------TVNNALSALENIGF 163 (198)
T ss_pred EEECC--CcccHHHHHHHHHHHcCCCcEEEEEeecHH-----------HHHHHHHHHHHcCC
Confidence 88742 234667899999999999999998765332 35566777777776
No 81
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.26 E-value=1.3e-12 Score=97.88 Aligned_cols=89 Identities=30% Similarity=0.395 Sum_probs=71.5
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC--CCCCchhHHHHH--H
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP--FDDETFDFEFSN--V 170 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~~--~ 170 (257)
|.+|||+|||+|.++..+++.+..+++|+|+++. .+.++++|..+.. +++++||+|++| .
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5689999999999999999877569999999976 3578889988775 788999999997 3
Q ss_pred hhccc-------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHAL-------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~-------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..+.. ...++++++.+.|||||.+++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 22211 235789999999999999999876
No 82
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=1.4e-11 Score=102.17 Aligned_cols=87 Identities=24% Similarity=0.274 Sum_probs=69.1
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
..+.++.+|||||||+|..+..+++. + .++|+++|+++. ++.++.+|......+++.||+|++
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYV 151 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEE
Confidence 34578899999999999999988875 2 359999999966 467888898776666788999987
Q ss_pred H-HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 N-VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ..+++ .+.+.+.|||||++++..
T Consensus 152 ~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 152 TAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 4 55433 346778999999999865
No 83
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.25 E-value=4.2e-11 Score=106.04 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
..++|||+|||+|.++..+++. +..+|+++|+|+. ...+...|.... .+++||+|+|| .+|+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccC
Confidence 3468999999999999999886 5568999999964 223555565442 35789999997 5554
Q ss_pred -----cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 174 -----ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 174 -----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
....+++++++.+.|||||.+++.....- .| +..+.+.|... ..+....+|.
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l---~y-------~~~l~~~Fg~~--~~la~~~~f~ 330 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL---PY-------PDLLDETFGSH--EVLAQTGRFK 330 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC---Ch-------HHHHHHHcCCe--EEEEeCCCEE
Confidence 23457899999999999999998764221 22 34555666543 3333445665
No 84
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.24 E-value=8.2e-11 Score=101.93 Aligned_cols=121 Identities=20% Similarity=0.202 Sum_probs=84.8
Q ss_pred CeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH-----
Q 025148 112 SKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN----- 169 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~----- 169 (257)
.+|||+|||+|.++..++.. +..+|+|+|+|+. .+.++++|+.+ ++++++||+|++|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 68999999999999999985 4569999999976 25677788765 3445579999886
Q ss_pred ---------Hhhcc------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcc-cCCc
Q 025148 170 ---------VFDHA------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFK-RSEM 227 (257)
Q Consensus 170 ---------~l~h~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~-~~~~ 227 (257)
+..|- ....++++++.+.|+|||++++.+... ....+.+++. +.++
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~------------q~~~~~~~~~~~~~~ 262 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW------------QQKSLKELLRIKFTW 262 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc------------HHHHHHHHHHhcCCC
Confidence 11121 134567899999999999999988532 2556777777 4566
Q ss_pred EEEEEec-CCCCceEEEEE
Q 025148 228 VRVRKVD-GFGLDTEVVFR 245 (257)
Q Consensus 228 ~~~~~~~-gf~~~~~vv~~ 245 (257)
..+.... -.+.++.++.+
T Consensus 263 ~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 263 YDVENGRDLNGKERVVLGF 281 (284)
T ss_pred ceeEEecCCCCCceEEEEE
Confidence 5544433 33334555543
No 85
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.24 E-value=2.7e-11 Score=107.07 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=83.1
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
....+++.+|||+|||+|.++..++..+ .+++|+|+++. .+.+..+|+.++++++++||+|++|
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATD 255 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEEC
Confidence 3345788899999999999998877665 49999999975 2467889999999888899999886
Q ss_pred -H------hh-c-c-ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 170 -V------FD-H-A-LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 170 -~------l~-h-~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
- .. + . ....++++++.++|||||++++.+|.. .++..++++.|+
T Consensus 256 PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--------------~~~~~~~~~~g~ 309 (329)
T TIGR01177 256 PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--------------IDLESLAEDAFR 309 (329)
T ss_pred CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------CCHHHHHhhcCc
Confidence 1 11 1 1 124678999999999999999988732 244556677776
No 86
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.24 E-value=3e-11 Score=102.43 Aligned_cols=113 Identities=20% Similarity=0.321 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH---
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN--- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~--- 169 (257)
..+.+|||+|||+|.++..+++. +..+++|+|+++. ++.+..+|+.+ ++++++||+|++|
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPY 164 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCC
Confidence 34569999999999999999985 5569999999965 25677888766 4567889999875
Q ss_pred ----Hhhcc--------------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 170 ----VFDHA--------------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 170 ----~l~h~--------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
..+++ .....+++++.++|+|||.+++.... ....++.+++.+.
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------------~~~~~~~~~l~~~ 232 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------------DQGEAVRALFEAA 232 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc------------cHHHHHHHHHHhC
Confidence 11111 11236789999999999999997631 1356788889888
Q ss_pred CcEEEEEec
Q 025148 226 EMVRVRKVD 234 (257)
Q Consensus 226 ~~~~~~~~~ 234 (257)
++..+....
T Consensus 233 gf~~v~~~~ 241 (251)
T TIGR03534 233 GFADVETRK 241 (251)
T ss_pred CCCceEEEe
Confidence 886655443
No 87
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.24 E-value=1.3e-10 Score=97.32 Aligned_cols=120 Identities=16% Similarity=0.095 Sum_probs=80.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+. .+.+..+| ++..+++||+|++ +++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchh
Confidence 4678999999999999999998764 7999999865 24455666 3344678999988 588
Q ss_pred hcccc--HHHHHHHHHHhccCCcEEEEEeccCC---------CcC----cCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 172 DHALY--PDKFVMEIERTLKPGGVCVLHVALSK---------RAD----KYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 172 ~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~---------~~~----~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+|+.+ ...+++++.+.+++++++ ...+... ..+ .-.....++..++.+++.+.||......
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 213 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIF-TFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTE 213 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEE-EECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeee
Confidence 88764 456778888876544433 3222110 000 0011134577889999999988755543
No 88
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.23 E-value=1.6e-10 Score=96.16 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=91.9
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEecCCCCC
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEGDFHRQP 157 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~d~~~~~ 157 (257)
.....++.+||+.|||.|..+.+|++.|. +|+|+|+|+. .+.+.++|+.+++
T Consensus 38 ~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 38 KLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred hcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 33345678999999999999999999987 8999999954 3467888998886
Q ss_pred CC---CCchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC-CcEEE
Q 025148 158 FD---DETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS-EMVRV 230 (257)
Q Consensus 158 ~~---~~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~-~~~~~ 230 (257)
.. .+.||+|+- .++.+++ ...+.++.+.+.|+|||.+++.+-..+.. .-...+-.+..++..+|... .+..+
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~-~~GPPf~v~~~e~~~lf~~~~~i~~l 195 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK-SQTPPYSVTQAELIKNFSAKIKFELI 195 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCC-CCCCCCcCCHHHHHHhccCCceEEEe
Confidence 42 257999877 5888886 34568899999999999988776422211 11111234788999999764 55544
Q ss_pred EE
Q 025148 231 RK 232 (257)
Q Consensus 231 ~~ 232 (257)
..
T Consensus 196 ~~ 197 (226)
T PRK13256 196 DS 197 (226)
T ss_pred ee
Confidence 43
No 89
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.22 E-value=1.8e-11 Score=99.80 Aligned_cols=136 Identities=16% Similarity=0.164 Sum_probs=96.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCc----------EEEecCCCC--CCCCCchh
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPL----------VIEGDFHRQ--PFDDETFD 164 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~----------~~~~d~~~~--~~~~~~fD 164 (257)
..+.+++......+-.++||+|||||..+..+...-. +++|+|+|.+++. ..+++.... ...++.||
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 3445555555455567999999999999999988654 8999999987321 122222211 13467899
Q ss_pred HHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCC----CcCChhHHHHhcccCCcEEEEEe
Q 025148 165 FEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSAN----DLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 165 ~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~----~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+|.+ +|+.++.+.+.++......|+|||.+.+++-.....+.|.-. +..+..-+...+...|+..+...
T Consensus 191 Li~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 191 LIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred chhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 9988 699999999999999999999999999998654433322211 23356667788888888766544
No 90
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.22 E-value=1.6e-11 Score=98.78 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=77.5
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
-.++||+|||.|.++..|+.+.. +++++|+|+. ++.+.++++.+. .++++||+|+. .++.++.+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSS
T ss_pred cceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCC
Confidence 36899999999999999999864 8999999966 578889988775 47789999755 68888875
Q ss_pred ---HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 177 ---PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 177 ---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
...++..+...|+|||.+++..........+. +.+..+.+..+|.+.
T Consensus 122 ~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wg--h~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 122 AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWG--HAAGAETVLEMLQEH 171 (201)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT---S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccC--cccchHHHHHHHHHH
Confidence 34688999999999999999876432211121 233678888888775
No 91
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.21 E-value=5.8e-11 Score=106.50 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=88.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCCCC-CCchhHHHHH--H
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFD-DETFDFEFSN--V 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~-~~~fD~V~~~--~ 170 (257)
.++.+|||+|||+|.++..++.. +..+|+|+|+|+. ++.++++|+.+..++ +++||+|+|| .
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 45679999999999999988864 5679999999976 356788887654332 4579999886 2
Q ss_pred hh----cc--------------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC
Q 025148 171 FD----HA--------------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE 226 (257)
Q Consensus 171 l~----h~--------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~ 226 (257)
+. +. ....++++++.+.|+|||.+++++... ..+.+.+++.+.|
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~------------Q~e~V~~ll~~~G 397 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD------------QGAAVRGVLAENG 397 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc------------HHHHHHHHHHHCC
Confidence 11 00 012356677888999999999987432 3678889999888
Q ss_pred cEEEEEec-CCCCceEEEEEc
Q 025148 227 MVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 227 ~~~~~~~~-gf~~~~~vv~~k 246 (257)
+..+.... -.+.++.++.++
T Consensus 398 f~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 398 FSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred CcEEEEEEcCCCCcEEEEEEE
Confidence 86554443 334445555443
No 92
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.21 E-value=2.4e-11 Score=108.19 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=71.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCC--CCCCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQ--PFDDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~ 170 (257)
..+..+||||||+|.++..+++. +...++|+|+++. ++.++++|+..+ .++++++|.|+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln- 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH- 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe-
Confidence 44569999999999999999985 6679999999854 567888888654 5788999998764
Q ss_pred hhccccH-----------HHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHALYP-----------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~~~-----------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.++| ..+++++.|+|||||.+.+.+-
T Consensus 200 ---FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 200 ---FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ---CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3333 5789999999999999999873
No 93
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.19 E-value=1.1e-10 Score=101.10 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=82.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH--H
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--V 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~ 170 (257)
++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.++++|+.+ ++++++||+|++| .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 4579999999999999999985 4569999999966 25677888754 2455689999886 1
Q ss_pred -----hhcc-------------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC
Q 025148 171 -----FDHA-------------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE 226 (257)
Q Consensus 171 -----l~h~-------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~ 226 (257)
+.++ .....+++++.+.|+|||++++.+.. +...+.+++.+.+
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-------------~~~~v~~~~~~~~ 266 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-------------SMEALEEAYPDVP 266 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------------CHHHHHHHHHhCC
Confidence 1111 11246788999999999999998842 2457888888888
Q ss_pred cEEEEEec
Q 025148 227 MVRVRKVD 234 (257)
Q Consensus 227 ~~~~~~~~ 234 (257)
+.......
T Consensus 267 ~~~~~~~~ 274 (284)
T TIGR03533 267 FTWLEFEN 274 (284)
T ss_pred CceeeecC
Confidence 87655444
No 94
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=2e-10 Score=98.76 Aligned_cols=113 Identities=20% Similarity=0.328 Sum_probs=82.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH--
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-- 169 (257)
..++.+|||+|||+|.++..++.. +..+++|+|+|+. ++.+..+|+.+. +++++||+|++|
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 356779999999999999999885 4579999999965 356677776442 335789999874
Q ss_pred Hh-----h--------------------ccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc
Q 025148 170 VF-----D--------------------HALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR 224 (257)
Q Consensus 170 ~l-----~--------------------h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~ 224 (257)
.+ + .+....++++++.+.|||||++++.+... ....+.+++.+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~------------~~~~~~~~l~~ 252 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD------------QGEAVRALLAA 252 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch------------HHHHHHHHHHh
Confidence 11 1 11223567888999999999999976311 35668888888
Q ss_pred CCcEEEEEe
Q 025148 225 SEMVRVRKV 233 (257)
Q Consensus 225 ~~~~~~~~~ 233 (257)
.|+..+...
T Consensus 253 ~gf~~v~~~ 261 (275)
T PRK09328 253 AGFADVETR 261 (275)
T ss_pred CCCceeEEe
Confidence 888755544
No 95
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.17 E-value=5.7e-11 Score=98.81 Aligned_cols=86 Identities=24% Similarity=0.234 Sum_probs=67.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
.++++.+|||||||+|..+..+++.. .++|+++|+++. ++.++.+|..+.....++||+|+++
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 35788999999999999999998863 346999999965 4677888887654445689998774
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...+ ..+.+.+.|||||++++.+
T Consensus 154 ~~~~~------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPK------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCccc------ccHHHHHhcCcCcEEEEEE
Confidence 4443 3456889999999999865
No 96
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.17 E-value=1.3e-10 Score=96.32 Aligned_cols=126 Identities=22% Similarity=0.242 Sum_probs=95.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHH-HHHHhhccccHHHHHHHHHHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFE-FSNVFDHALYPDKFVMEIERT 187 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V-~~~~l~h~~~~~~~l~~~~r~ 187 (257)
.....|.|+|||.+.++. ... ..|+..|+...+..++.+|+.++|++|++.|++ +|-++. -.|...++.|++|+
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~-~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLM-gtn~~df~kEa~Ri 253 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SER-HKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLM-GTNLADFIKEANRI 253 (325)
T ss_pred cCceEEEecccchhhhhh---ccc-cceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhh-cccHHHHHHHHHHH
Confidence 445689999999998876 223 389999999999999999999999999999994 554443 34677899999999
Q ss_pred ccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEccc
Q 025148 188 LKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNA 248 (257)
Q Consensus 188 LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~ 248 (257)
||+||.+.|..-.+ ++-+..++.+.+...||........-..-+.+.|+|-.
T Consensus 254 Lk~gG~l~IAEv~S---------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 254 LKPGGLLYIAEVKS---------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred hccCceEEEEehhh---------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 99999999975322 22367788999999999755544322222456666644
No 97
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.17 E-value=7.5e-11 Score=103.16 Aligned_cols=117 Identities=13% Similarity=0.075 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC--------------------CcEEEecCCCCCCCCCchhHHHH-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP--------------------PLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~--------------------~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
++.+|||+|||+|.++..+++.+ .+|+|+|+|+.. +.+...|+.++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 57899999999999999999876 499999999761 23344454432 578999988
Q ss_pred HHhhccccHH--HHHHHHHHhccCCcEEEEEeccCCC----------cCcCC---CCCcCChhHHHHhcccCCcEEEE
Q 025148 169 NVFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKR----------ADKYS---ANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 169 ~~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~----------~~~y~---~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++++|+++.. .+++.+.+ +.+||.++...|.... ...+. ..++++.+++.+++++.||....
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence 5888987543 35566654 4555554433332110 00111 11344789999999999987543
No 98
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.16 E-value=1.5e-10 Score=96.93 Aligned_cols=108 Identities=22% Similarity=0.319 Sum_probs=82.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCC--CCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQP--FDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~~ 169 (257)
...++|||+|||+|..+..++++ ...+++|||+++. .+.++++|+.++. ....+||+|+||
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 34789999999999999999997 6589999999976 5788899988763 344579999997
Q ss_pred --Hhh---------------cc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 170 --VFD---------------HA--LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 170 --~l~---------------h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
.+. |. .+.++.++...+.|||||.+.+..+..+ ..++..++++.++.
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er------------l~ei~~~l~~~~~~ 188 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER------------LAEIIELLKSYNLE 188 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH------------HHHHHHHHHhcCCC
Confidence 221 11 1456788999999999999999876332 45566777765553
No 99
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=6.4e-11 Score=97.40 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=88.6
Q ss_pred eEEEECCCCCHHHHHHHHc-CC--CcEEEecCCCCC--------------CcEEEecCC----CCCCCCCchhHHHHH-H
Q 025148 113 KALCIGARVGQEVEALKRV-GV--SDSVGIDLVPYP--------------PLVIEGDFH----RQPFDDETFDFEFSN-V 170 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~-~~--~~v~gvD~s~~~--------------~~~~~~d~~----~~~~~~~~fD~V~~~-~ 170 (257)
+||+||||.|....-+.+. +. ..|+++|.|+.. +.....|+. .-+.+.+++|+|.+- +
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999888774 33 689999999871 122222322 225667899987663 4
Q ss_pred hhccc--cHHHHHHHHHHhccCCcEEEEEeccC--------CCcCcCCCC----------CcCChhHHHHhcccCCcEEE
Q 025148 171 FDHAL--YPDKFVMEIERTLKPGGVCVLHVALS--------KRADKYSAN----------DLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 171 l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~--------~~~~~y~~~----------~~~~~~~~~~~f~~~~~~~~ 230 (257)
|..+. ....++++++++|||||.+++..... ......+.+ ++|+.+++..+|.++||..+
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~ 233 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEV 233 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchh
Confidence 44333 45678999999999999999974210 001111111 66799999999999999766
Q ss_pred EEecCCCCceEEEEEccc
Q 025148 231 RKVDGFGLDTEVVFRKNA 248 (257)
Q Consensus 231 ~~~~gf~~~~~vv~~k~~ 248 (257)
..... -+.+|.++++
T Consensus 234 ~~~~~---~rl~vNr~k~ 248 (264)
T KOG2361|consen 234 QLEVD---CRLLVNRKKQ 248 (264)
T ss_pred cccce---eeeeeehhcc
Confidence 54321 1334555544
No 100
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.14 E-value=6.5e-11 Score=105.75 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=65.7
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
+++|||+|||+|.++..+++. +..+|+++|+|+. .+.+...|... .+++++||+|+|| -
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 469999999999999999885 5679999999965 12444555533 2345689999998 4
Q ss_pred hhcc---c--cHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHA---L--YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~---~--~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++.. . ...+++++++++|||||.+++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3322 1 23578899999999999999986
No 101
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.14 E-value=3.2e-10 Score=99.16 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=80.8
Q ss_pred CeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH--H--
Q 025148 112 SKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--V-- 170 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~-- 170 (257)
.+|||+|||+|.++..++.. +..+|+|+|+|+. ++.++++|+.+ .+++++||+|+|| .
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 68999999999999999875 5679999999966 25677888754 2345689999886 1
Q ss_pred ---h-------hcc------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 171 ---F-------DHA------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 171 ---l-------~h~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+ .|- ....++++++.+.|+|||.+++.+.. +...+.++|.+.++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~-------------~~~~~~~~~~~~~~~ 280 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN-------------SRVHLEEAYPDVPFT 280 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc-------------CHHHHHHHHhhCCCE
Confidence 1 111 11246789999999999999998742 234577888888887
Q ss_pred EEEEec
Q 025148 229 RVRKVD 234 (257)
Q Consensus 229 ~~~~~~ 234 (257)
+.....
T Consensus 281 ~~~~~~ 286 (307)
T PRK11805 281 WLEFEN 286 (307)
T ss_pred EEEecC
Confidence 765554
No 102
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.10 E-value=2.8e-10 Score=94.41 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=65.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
.+.++.+|||+|||+|..+..+++.. .+++++|+++. ++.+..+|..+...+.++||+|+++ .
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 35678899999999999998888765 38999999865 3566777765432234789998874 5
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+++ .+++.+.|+|||.+++...
T Consensus 154 ~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh------hHHHHHhcCCCcEEEEEEc
Confidence 5433 4567899999999999774
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.10 E-value=1.1e-10 Score=83.87 Aligned_cols=85 Identities=34% Similarity=0.483 Sum_probs=69.6
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCC-CCCchhHHHHH-Hhhc-c
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF-DDETFDFEFSN-VFDH-A 174 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~-~l~h-~ 174 (257)
+++|+|||.|..+..+.+....+++++|+++. .+.+...|..+... ..+++|+|+++ .+++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 58999999999999998855569999999864 34566777776653 55789999885 7777 6
Q ss_pred ccHHHHHHHHHHhccCCcEEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.....+++.+.+.|+|||.++++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78888999999999999999875
No 104
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.10 E-value=2.8e-10 Score=93.72 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=62.6
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHHhhcccc
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNVFDHALY 176 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~ 176 (257)
.++|+|||+|..+..+++... +|+|+|+|+. ...+...+..++--.++++|+|+|.---|..|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 899999999988888888754 9999999976 12222223333333389999999963345566
Q ss_pred HHHHHHHHHHhccCCc-EEEEEe
Q 025148 177 PDKFVMEIERTLKPGG-VCVLHV 198 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG-~l~i~~ 198 (257)
.+++.++++|+||++| .+.+..
T Consensus 115 le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hHHHHHHHHHHcCCCCCEEEEEE
Confidence 7789999999999876 666644
No 105
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.10 E-value=2.6e-10 Score=95.43 Aligned_cols=88 Identities=26% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC------CcEEEecCCCCCCCCCchhHHHH-HHhhccccHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP------PLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFVM 182 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~------~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~~l~ 182 (257)
...++||||+|.|..+..++..- .+|+++|.|+.+ -.+...+..++.-.+.+||+|.| |+++...+|...++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~ 172 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLR 172 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHH
Confidence 35689999999999999998854 389999999761 12223344444444568999988 99999999999999
Q ss_pred HHHHhccCCcEEEEEe
Q 025148 183 EIERTLKPGGVCVLHV 198 (257)
Q Consensus 183 ~~~r~LkpgG~l~i~~ 198 (257)
+|++.|+|+|++++.+
T Consensus 173 ~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 173 DIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHhCCCCEEEEEE
Confidence 9999999999999885
No 106
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.07 E-value=2e-10 Score=95.55 Aligned_cols=125 Identities=22% Similarity=0.316 Sum_probs=83.6
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEe
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEG 151 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~ 151 (257)
+..++......++.+||..|||.|..+..|+++|. +|+|+|+|+. .+.+.++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 33333333456778999999999999999999986 9999999965 2356788
Q ss_pred cCCCCCCCC-CchhHHHHH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhccc
Q 025148 152 DFHRQPFDD-ETFDFEFSN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKR 224 (257)
Q Consensus 152 d~~~~~~~~-~~fD~V~~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~ 224 (257)
|+.+++-.+ ++||+|+-. .++-++ ...+..+.+.++|||||.+++.+-.......-...+-.+.+++.++|..
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~ 181 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGP 181 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTT
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcC
Confidence 998876544 479999763 444443 5677899999999999995444322111111122233488999999993
No 107
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.07 E-value=5.2e-10 Score=91.66 Aligned_cols=90 Identities=20% Similarity=0.087 Sum_probs=64.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCC-CCCCCCchhHHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHR-QPFDDETFDFEFSNV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~-~~~~~~~fD~V~~~~ 170 (257)
..++.+|||+|||+|.++..+++. +..+|+++|+++. ++.++.+|+.+ ++.....+|.++..
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~- 116 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE- 116 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE-
Confidence 457889999999999999988764 4569999999975 34566666643 11111224544332
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
...+..++++++.+.|||||.+++..+.
T Consensus 117 --~~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 117 --GGRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --CCcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 1234568999999999999999998753
No 108
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.05 E-value=3.2e-09 Score=86.38 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=87.0
Q ss_pred CCCC-eEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------C-CcEEEecCCCC--CC------CCCc
Q 025148 109 SNES-KALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------P-PLVIEGDFHRQ--PF------DDET 162 (257)
Q Consensus 109 ~~~~-~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~-~~~~~~d~~~~--~~------~~~~ 162 (257)
...+ +|||||||||..+.++++. +.....-.|.++. + ..-+..|+... +. ..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3344 5999999999999999985 6666677777654 1 11123333332 22 2468
Q ss_pred hhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC---------------CCCcCChhHHHHhccc
Q 025148 163 FDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYS---------------ANDLFSVKPLVKLFKR 224 (257)
Q Consensus 163 fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~---------------~~~~~~~~~~~~~f~~ 224 (257)
||.|+| |++|-.+ .-+.+++.+.++|++||.|++.-|........+ ...+-+.+++.++..+
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence 999998 6665443 345678999999999999999877543211000 1134467778888888
Q ss_pred CCcEEEEEecCCCCceEEEEEc
Q 025148 225 SEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 225 ~~~~~~~~~~gf~~~~~vv~~k 246 (257)
.|+.....++--.--..+||+|
T Consensus 183 ~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 183 HGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCCccCcccccCCCCeEEEEeC
Confidence 8876555443111112456664
No 109
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.04 E-value=6.1e-10 Score=103.64 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=77.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH--H
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--V 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~ 170 (257)
++.+|||+|||+|.++..++.. +..+|+|+|+|+. .+.++.+|+.+ .+++++||+|+|| .
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 3468999999999999988764 6679999999965 24566777643 2345689999885 1
Q ss_pred h-------------hcc------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 171 F-------------DHA------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 171 l-------------~h~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
+ .|- ....++++++.++|+|||.+++.+... ..+.+.+++.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------q~~~v~~~~~~~ 284 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------QEEAVTQIFLDH 284 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------hHHHHHHHHHhc
Confidence 1 111 112346788889999999999987421 366778888887
Q ss_pred CcEEEE
Q 025148 226 EMVRVR 231 (257)
Q Consensus 226 ~~~~~~ 231 (257)
++..+.
T Consensus 285 g~~~~~ 290 (506)
T PRK01544 285 GYNIES 290 (506)
T ss_pred CCCceE
Confidence 775443
No 110
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.04 E-value=2.4e-10 Score=90.68 Aligned_cols=94 Identities=23% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCcEEEecCCCCCCCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCC--------------------
Q 025148 145 PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR-------------------- 203 (257)
Q Consensus 145 ~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------------- 203 (257)
++.++++|+.++|+++++||+|++. +++|+.++.+++++++|+|||||.+++.......
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVA 106 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhh
Confidence 4788999999999999999999885 8999999999999999999999999887532210
Q ss_pred -----cCcCCC-----CCcCChhHHHHhcccCCcEEEEEec-CCCC
Q 025148 204 -----ADKYSA-----NDLFSVKPLVKLFKRSEMVRVRKVD-GFGL 238 (257)
Q Consensus 204 -----~~~y~~-----~~~~~~~~~~~~f~~~~~~~~~~~~-gf~~ 238 (257)
...|.. ..+.+.+++.+++++.||..+.... +++.
T Consensus 107 ~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 107 TVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred HHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 001110 1445888899999999998776554 5553
No 111
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.03 E-value=3.4e-10 Score=99.65 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------------CCcEEEecCCCC----CCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------------PPLVIEGDFHRQ----PFDD 160 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------------~~~~~~~d~~~~----~~~~ 160 (257)
++.+|||+|||.|..+......+...++|+|++.. ...++.+|.... .+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 78899999999999888888877779999999955 123456665533 1333
Q ss_pred --CchhHHHHH-Hhhcccc----HHHHHHHHHHhccCCcEEEEEeccC
Q 025148 161 --ETFDFEFSN-VFDHALY----PDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 161 --~~fD~V~~~-~l~h~~~----~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
..||+|-|. ++|+.-. ...+++.+.+.|||||+++.++|+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 589999884 7777653 3458899999999999999999753
No 112
>PHA03411 putative methyltransferase; Provisional
Probab=99.03 E-value=4.6e-10 Score=95.43 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=81.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH-Hhhcccc-
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALY- 176 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~- 176 (257)
.+++|||+|||+|.++..++.. +..+|+|+|+++. .+.++++|+.+... +++||+|++| -+.|...
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 4579999999999998888774 3469999999977 35678888887653 4689999997 4544321
Q ss_pred -------------------HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 177 -------------------PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 177 -------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
..+.+......|+|+|.+.+..-... -|+ .-.+..+..+++.+.||.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~---~y~--~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP---YYD--GTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc---ccc--ccCCHHHHHHHHHhcCcE
Confidence 23566777889999997777532111 111 123788899999999885
No 113
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.03 E-value=1.1e-09 Score=95.57 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=67.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC----------------CCcEEEecCCC-CCCCCCc---hh-H
Q 025148 109 SNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY----------------PPLVIEGDFHR-QPFDDET---FD-F 165 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~~~~~---fD-~ 165 (257)
.++.+|||+|||+|..+..+.+.. ..+++|+|+|+. .+..+++|+.+ .+++... .+ +
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 467899999999999999998763 459999999976 12456888876 3444332 22 3
Q ss_pred HHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 166 EFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 166 V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+++ +++.|+. +..+++++++++|+|||.+++.+..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 344 3666665 3456899999999999999998743
No 114
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.8e-09 Score=93.16 Aligned_cols=120 Identities=26% Similarity=0.407 Sum_probs=82.7
Q ss_pred eEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------C---CcEEEecCCCCCCCCCchhHHHHH--Hhhcc
Q 025148 113 KALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------P---PLVIEGDFHRQPFDDETFDFEFSN--VFDHA 174 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~---~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~ 174 (257)
+|||+|||+|.++..++.. +..+|+|+|+|+. . +.++++|..+ +.. ++||+|+|| .+..-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccC-CceeEEEeCCCCCCCc
Confidence 7999999999999999986 5579999999986 1 2334444332 222 379999887 32221
Q ss_pred ----------cc--------------HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC-cEE
Q 025148 175 ----------LY--------------PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE-MVR 229 (257)
Q Consensus 175 ----------~~--------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~-~~~ 229 (257)
.+ ..+++.++.+.|+|||.+++..... ..+.+.++|.+.+ +..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~------------q~~~v~~~~~~~~~~~~ 258 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT------------QGEAVKALFEDTGFFEI 258 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC------------cHHHHHHHHHhcCCceE
Confidence 02 2456788999999999999988422 3678999999999 554
Q ss_pred EEEec-CCCCceEEEEEc
Q 025148 230 VRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 230 ~~~~~-gf~~~~~vv~~k 246 (257)
+.... .++..+.+..++
T Consensus 259 v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 259 VETLKDLFGRDRVVLAKL 276 (280)
T ss_pred EEEEecCCCceEEEEEEe
Confidence 44444 455444444443
No 115
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.99 E-value=1.8e-09 Score=86.26 Aligned_cols=108 Identities=18% Similarity=0.080 Sum_probs=81.6
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
..-++++++++|||||+|..+..++.. +.++|+++|-+++ ++.++.++..+.--...++|.||.
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFI 108 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFI 108 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEE
Confidence 445688999999999999999998854 6779999998876 567778877664212226999877
Q ss_pred H-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 169 N-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 169 ~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
+ . .+.+.+++.+...|||||++++..-..+ +.....+.+++.|+
T Consensus 109 GGg----~~i~~ile~~~~~l~~ggrlV~naitlE-----------~~~~a~~~~~~~g~ 153 (187)
T COG2242 109 GGG----GNIEEILEAAWERLKPGGRLVANAITLE-----------TLAKALEALEQLGG 153 (187)
T ss_pred CCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH-----------HHHHHHHHHHHcCC
Confidence 4 3 2345889999999999999999764333 45566677777777
No 116
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.99 E-value=3.2e-09 Score=86.62 Aligned_cols=131 Identities=24% Similarity=0.339 Sum_probs=102.2
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCC---CCchhHHHHH-HhhccccHH---HHHHHH
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFD---DETFDFEFSN-VFDHALYPD---KFVMEI 184 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~---~~~fD~V~~~-~l~h~~~~~---~~l~~~ 184 (257)
-++|||||=+...... ..+..+|+.||+++....+.+.|+.+.|.| +++||+|.+. |++++++|. ++++.+
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~ 130 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRA 130 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHH
Confidence 5999999986654433 235568999999999999999999998874 6789998775 999999776 589999
Q ss_pred HHhccCCcE-----EEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcccc
Q 025148 185 ERTLKPGGV-----CVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAK 249 (257)
Q Consensus 185 ~r~LkpgG~-----l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~~ 249 (257)
++.|+|+|. |++..|..- ..+.++.+.+.+..++...||..+.....--+ ...++++.+.
T Consensus 131 ~~fL~~~g~~~~~~LFlVlP~~C----v~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl-~y~l~r~~~~ 195 (219)
T PF11968_consen 131 HKFLKPPGLSLFPSLFLVLPLPC----VTNSRYMTEERLREIMESLGFTRVKYKKSKKL-AYWLFRKSGK 195 (219)
T ss_pred HHHhCCCCccCcceEEEEeCchH----hhcccccCHHHHHHHHHhCCcEEEEEEecCeE-EEEEEeecCC
Confidence 999999999 999988543 22335668889999999999999888764332 3445555443
No 117
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.99 E-value=3.1e-09 Score=87.14 Aligned_cols=126 Identities=25% Similarity=0.348 Sum_probs=96.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC--CCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ--PFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~--~~~~~~fD~V~~ 168 (257)
.+.|.+|||...|-|+.+....++|...|+.++.++. .+.++.+|..+. .|+|++||+|+.
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 3578999999999999999999988779999998876 457778887765 688999999876
Q ss_pred H----HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec-CCC
Q 025148 169 N----VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD-GFG 237 (257)
Q Consensus 169 ~----~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~-gf~ 237 (257)
+ ++.--...+++.+|++|+|||||.++-.+.+... .|...+ -..++.+.+++.||..+.... +.+
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~--ryrG~d--~~~gVa~RLr~vGF~~v~~~~~~~g 281 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK--RYRGLD--LPKGVAERLRRVGFEVVKKVREALG 281 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc--ccccCC--hhHHHHHHHHhcCceeeeeehhccc
Confidence 4 2222235678899999999999999988754431 222211 367888999999998777665 444
No 118
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.98 E-value=1.6e-09 Score=92.13 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=76.4
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------CCcEEEecCCCCCC--CCCchhHHHHH--Hh--
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------PPLVIEGDFHRQPF--DDETFDFEFSN--VF-- 171 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~~~~~~~d~~~~~~--~~~~fD~V~~~--~l-- 171 (257)
+.+|||+|||+|.++..+++. +..+|+|+|+|+. ...++++|+.+... ..++||+|++| .+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 458999999999999998874 4568999999977 24678888765311 13579999887 22
Q ss_pred ---hccc--------------------cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 172 ---DHAL--------------------YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 172 ---~h~~--------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
..+. -..++++.+.+.|||||++++.+... ...++..++.+.++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~------------~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER------------QAPLAVEAFARAGLI 234 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc------------hHHHHHHHHHHCCCC
Confidence 1110 12467778889999999999987422 356778888887774
No 119
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=9.8e-10 Score=91.54 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=77.9
Q ss_pred HhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 104 RKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
...-+.+|++|||.|.|+|.++..|+.. +.++|+.+|+.++ .+....+|+.+..+++ .||.
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDa 166 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDA 166 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCE
Confidence 3555789999999999999999999973 5579999999866 3666777887776665 7888
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCC
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
|+.+ +++|.++++.+++.|||||.+++-+|+.+
T Consensus 167 v~LD----mp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 167 VFLD----LPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred EEEc----CCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 8665 56799999999999999999999998654
No 120
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.97 E-value=1.1e-09 Score=89.07 Aligned_cols=88 Identities=27% Similarity=0.349 Sum_probs=67.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCC----------cEEEecC-CCCCCCCCchhHHHH-HHhhccc--
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPP----------LVIEGDF-HRQPFDDETFDFEFS-NVFDHAL-- 175 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~----------~~~~~d~-~~~~~~~~~fD~V~~-~~l~h~~-- 175 (257)
.+.-|||||||+|.-+..+.+.|. ..+|+|+|+.+. .++.+|. +-+||..++||.+|+ ..++++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeeccc
Confidence 367899999999999999998884 899999998721 2344444 457999999998766 4333332
Q ss_pred -----cHH----HHHHHHHHhccCCcEEEEEe
Q 025148 176 -----YPD----KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 176 -----~~~----~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|. .++..++.+|++|+..+++.
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 344 36788999999999999986
No 121
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.96 E-value=1.1e-09 Score=93.67 Aligned_cols=107 Identities=21% Similarity=0.366 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------CCcEEEecCC
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------PPLVIEGDFH 154 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------~~~~~~~d~~ 154 (257)
.+++...+.....++++.++|+|||.|..+...-+.+...++|+||++. ...++.+|..
T Consensus 103 NNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 103 NNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred hHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 3444444445556888999999999999988888878789999999966 2466777765
Q ss_pred C------CCCCCCchhHHHHH-Hhhcc----ccHHHHHHHHHHhccCCcEEEEEeccCC
Q 025148 155 R------QPFDDETFDFEFSN-VFDHA----LYPDKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 155 ~------~~~~~~~fD~V~~~-~l~h~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
. +++++.+||+|-|. ++|+. .....++.++.+.|||||+++-++|+.+
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 3 34556669999775 44443 3455688999999999999999998643
No 122
>PRK04457 spermidine synthase; Provisional
Probab=98.95 E-value=6.2e-10 Score=95.27 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC-CCCCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-PFDDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~~~~~~fD~V~~~~ 170 (257)
..+.+|||||||+|.++..+++. +..+++++|+++. ++.++.+|..+. .-..++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999999988774 6679999999866 345677776543 22235799998875
Q ss_pred hhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++... ...++++++.+.|+|||++++...
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 43321 236899999999999999999654
No 123
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.94 E-value=2.8e-09 Score=85.24 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=70.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
.+.++.+|||+|||+|.++..+++.+ .+++++|+++. ++.++.+|+.++++++++||.|++|.-.|
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 34677899999999999999999874 59999999964 46788999999988887899999985444
Q ss_pred cccHHHHHHHHHHh--ccCCcEEEEEeccC
Q 025148 174 ALYPDKFVMEIERT--LKPGGVCVLHVALS 201 (257)
Q Consensus 174 ~~~~~~~l~~~~r~--LkpgG~l~i~~~~~ 201 (257)
+. ...+..+.+. +.++|.++++.-..
T Consensus 89 ~~--~~~i~~~l~~~~~~~~~~l~~q~e~a 116 (169)
T smart00650 89 IS--TPILFKLLEEPPAFRDAVLMVQKEVA 116 (169)
T ss_pred cH--HHHHHHHHhcCCCcceEEEEEEHHHh
Confidence 42 2444444432 45888998886443
No 124
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=5.6e-09 Score=89.40 Aligned_cols=115 Identities=23% Similarity=0.290 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-Hh
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-VF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l 171 (257)
..+++|||+|||.|.++..+++. +..+++-+|+|.. +..+...|..+ +.++ +||+|+|| -+
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPf 234 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPF 234 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCc
Confidence 44569999999999999999986 6789999999954 12344555443 3344 89999998 33
Q ss_pred hccc-----cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 172 DHAL-----YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 172 ~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
|-=. --++++.+..+.|++||.|.|...... .| ..-+.+.|.+. ..+....||-
T Consensus 235 h~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l---~y-------~~~L~~~Fg~v--~~la~~~gf~ 293 (300)
T COG2813 235 HAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL---PY-------EKKLKELFGNV--EVLAKNGGFK 293 (300)
T ss_pred cCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC---Ch-------HHHHHHhcCCE--EEEEeCCCEE
Confidence 3111 124789999999999999999774111 22 45566777633 2333444665
No 125
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=1.8e-09 Score=99.00 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=72.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC----CCCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP----FDDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~----~~~~~fD~V 166 (257)
..+|.+|||+|||+|..+..+++. +.++|+++|+++. ++.++++|..+.+ ..+++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 367889999999999999998875 3468999999975 3567788887765 446789998
Q ss_pred HHH-------Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 167 FSN-------VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 167 ~~~-------~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+++ ++.+-++ ..+++.++.+.|||||.++.+++.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 753 3433322 356789999999999999998864
No 126
>PRK00811 spermidine synthase; Provisional
Probab=98.93 E-value=9.3e-10 Score=95.25 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=68.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------CCcEEEecCCCC-CCCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------------PPLVIEGDFHRQ-PFDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------------~~~~~~~d~~~~-~~~~~~fD~V 166 (257)
..+.+||+||||+|..+..+.+. +..+|+++|+++. ++.++.+|.... ...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999999886 5568999999966 235566666543 2245789999
Q ss_pred HHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++...+.. ...++++.+++.|+|||++++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 887433322 135788999999999999998653
No 127
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.92 E-value=2.6e-09 Score=97.74 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=69.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------CC--cE--EEecCCCCCC--CCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------PP--LV--IEGDFHRQPF--DDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~~--~~--~~~d~~~~~~--~~~~fD~V~~ 168 (257)
..++.+|||+|||+|..+..+++. +.++|+|+|+++. .. .+ ..+|....+. ++++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 467899999999999999999885 4569999999977 11 22 4455544433 4678999864
Q ss_pred H-------Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEeccC
Q 025148 169 N-------VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 169 ~-------~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
+ ++.+.++ ..+++.++.++|||||.++.+++..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2 4444332 3568899999999999999998743
No 128
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.92 E-value=3.1e-09 Score=93.30 Aligned_cols=86 Identities=20% Similarity=0.197 Sum_probs=65.3
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
.++++++|||+|||+|.++..+++.. .+.|+++|+++. ++.++.+|........++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 35678899999999999999998853 247999999975 3567788876655555689998874
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+++ ...+.+.|+|||.+++..
T Consensus 157 ~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHh------HHHHHHhcCCCCEEEEEe
Confidence 44432 345678999999988865
No 129
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.92 E-value=9e-10 Score=95.51 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=70.8
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
..+-++..|||+|||+|.++...++.|..+|+|+|.|.. .+.++++.++++.+|.+++|+|+|..
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 335678899999999999999999999899999998854 36788999998888888999998874
Q ss_pred hhccccHHHHH----HHHHHhccCCcEEEE
Q 025148 171 FDHALYPDKFV----MEIERTLKPGGVCVL 196 (257)
Q Consensus 171 l~h~~~~~~~l----~~~~r~LkpgG~l~i 196 (257)
+.+..-.+.++ -.=-+.|+|||.++=
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 44333333333 233479999998763
No 130
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=2e-09 Score=88.03 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhcc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHA 174 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~ 174 (257)
+....++|||||-|.+...+...+..+++-+|.|.. ......+|-+.++|.++++|+|++. .+|++
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 455689999999999999999988889999999854 2356788889999999999999996 89999
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+....+.+++..|||+|.++-++
T Consensus 151 NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHH
Confidence 999999999999999999998775
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.91 E-value=5.4e-10 Score=92.27 Aligned_cols=89 Identities=24% Similarity=0.270 Sum_probs=64.2
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
...+++|++|||||||+|+.+..++.. + ...|+++|+.+. ++.+..+|...---+...||.|+
T Consensus 67 ~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~ 146 (209)
T PF01135_consen 67 ALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRII 146 (209)
T ss_dssp HTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEE
T ss_pred HHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEE
Confidence 334789999999999999999999985 3 447999999876 57888998776444557899988
Q ss_pred HH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ ....+ =..+.+.||+||++++-+.
T Consensus 147 v~~a~~~i------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 147 VTAAVPEI------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred EeeccchH------HHHHHHhcCCCcEEEEEEc
Confidence 75 44422 2457788999999999663
No 132
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.9e-09 Score=87.87 Aligned_cols=91 Identities=22% Similarity=0.225 Sum_probs=71.2
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
++....++++++|||||||+|+.+..|++... +|+.+|..+. ++.+.++|...---+...||.|
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEE
Confidence 33345568899999999999999999999765 9999999865 5788888887654455889998
Q ss_pred HHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+.. ....++ +.+.+.||+||++++-+.
T Consensus 143 ~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 774 554333 346778999999999764
No 133
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=3.8e-09 Score=96.64 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=70.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC--------------CCcEEEecCCCCC--CCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY--------------PPLVIEGDFHRQP--FDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~--------------~~~~~~~d~~~~~--~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|..+..+++.. ..+|+|+|+++. .+.++++|..+.+ +++++||.|+++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 4678899999999999999998863 369999999976 2457788887653 345789999743
Q ss_pred ------Hhhc------ccc----------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ------VFDH------ALY----------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ------~l~h------~~~----------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+ ... ..+++.++.+.|||||.++++++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1111 111 236789999999999999998863
No 134
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.89 E-value=3.1e-09 Score=97.70 Aligned_cols=92 Identities=22% Similarity=0.237 Sum_probs=69.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH--
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-- 169 (257)
.++.+|||+|||+|..+..+++. +.++|+|+|+++. ++.+..+|..+.+ ++++||.|+++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 57789999999999999888764 3458999999976 3467778887765 45689998742
Q ss_pred -----Hhh---------------ccc-cHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 170 -----VFD---------------HAL-YPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 170 -----~l~---------------h~~-~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
++. ++. ...+++.++.+.|||||+++.+++..
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 221 111 12357899999999999999998743
No 135
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=3e-09 Score=97.25 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=70.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~ 169 (257)
..+|.+|||+|||+|..+..+++. +.++|+++|+++. ++.+..+|...++ +.+++||.|+++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 467889999999999999988875 3569999999976 2457778877665 446789998753
Q ss_pred -------Hhhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -------VFDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -------~l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+-+ ...+++.++.+.|||||.++.+++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 222111 2246789999999999999999874
No 136
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.85 E-value=3.7e-09 Score=89.17 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=83.5
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCCCC---C
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFD---D 160 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~---~ 160 (257)
.+...-+.+|++|||.|.|+|.++..|++. +.++|+..|+.++ ++.+...|+.+..++ +
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~ 111 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELE 111 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-T
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccccc
Confidence 344555789999999999999999999974 5679999999865 467778888654442 2
Q ss_pred CchhHHHHHHhhccccHHHHHHHHHHhc-cCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 161 ETFDFEFSNVFDHALYPDKFVMEIERTL-KPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~~~~l~~~~r~L-kpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+.+|.|+.+ +++|.+++..+.++| |+||++++-+|.-. .......-+++.||..+...
T Consensus 112 ~~~DavfLD----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie-----------Qv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 112 SDFDAVFLD----LPDPWEAIPHAKRALKKPGGRICCFSPCIE-----------QVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp TSEEEEEEE----SSSGGGGHHHHHHHE-EEEEEEEEEESSHH-----------HHHHHHHHHHHTTEEEEEEE
T ss_pred CcccEEEEe----CCCHHHHHHHHHHHHhcCCceEEEECCCHH-----------HHHHHHHHHHHCCCeeeEEE
Confidence 457776554 667999999999999 99999999988543 35555666777888776544
No 137
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.85 E-value=4.1e-09 Score=90.35 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=69.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
.+++.+|||+|||+|..+..+++. ..+.|+++|+++. ++.+...|....+...++||.|+++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 467889999999999999998874 2358999999976 3456777776665555679998653
Q ss_pred ------Hhhcc---------------c-cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ------VFDHA---------------L-YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ------~l~h~---------------~-~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+- . ...++++++.+.|||||+++.+++.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 22111 1 1235889999999999999998864
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=98.84 E-value=6.8e-09 Score=86.44 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc----CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH--Hh--
Q 025148 110 NESKALCIGARVGQEVEALKRV----GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN--VF-- 171 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~--~l-- 171 (257)
.+.+|||+|||+|.++..+++. +..+|+|+|+++. .+.+..+|+...++ +++||+|++| ..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 3679999999999999988764 3458999999977 45788889887665 5689999998 22
Q ss_pred h--cc-------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcC------ChhHHHHhcccCCcE
Q 025148 172 D--HA-------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLF------SVKPLVKLFKRSEMV 228 (257)
Q Consensus 172 ~--h~-------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~------~~~~~~~~f~~~~~~ 228 (257)
. +. .-...+++.+.+++++|+. ++ |..--...|+...+| +.....++.++.|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL--P~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II--PQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee--CcccccCcccCccceeeccCcccHHHHHHHHhcCee
Confidence 1 11 1144578888886666664 33 432222234444333 344455666666653
No 139
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.82 E-value=1.9e-09 Score=92.70 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
-.+..|||+|||+|.++...++.|..+|++++-|+- .+.++.+.++++.+|+ +.|++++.-+..
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEeccchh
Confidence 356789999999999999999999889999998854 5678899999998875 599999975555
Q ss_pred cccHHHHHH---HHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVM---EIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~---~~~r~LkpgG~l~i~~ 198 (257)
+.--+++++ ..+|.|||.|..+=.+
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 554555553 4568999999987544
No 140
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.81 E-value=3.8e-09 Score=95.60 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCC--CeEEEECCCCCHHHHHHHHcCCCcEEEecCC---CCCCcE--------EEe--cCCC
Q 025148 91 KIQVFAKFFDDLKRKKLLSNE--SKALCIGARVGQEVEALKRVGVSDSVGIDLV---PYPPLV--------IEG--DFHR 155 (257)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s---~~~~~~--------~~~--d~~~ 155 (257)
.+..|.+.+.+++... ...+ ..+||+|||.|.++.+|.+++. .+..+-.. +..+.+ ..+ -...
T Consensus 97 Ga~~Yid~i~~~~~~~-~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~r 174 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLI-KWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQR 174 (506)
T ss_pred CHHHHHHHHHHHhhcc-ccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCcchhhhhhcccc
Confidence 3444555555544332 1222 3799999999999999998753 33333222 211111 111 2357
Q ss_pred CCCCCCchhHHHHH--HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 156 QPFDDETFDFEFSN--VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 156 ~~~~~~~fD~V~~~--~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+||++++||+|.|. .+.+..+-...+-|+.|+|+|||+++++.|
T Consensus 175 LPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 175 LPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 89999999999884 444444545678999999999999999876
No 141
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.80 E-value=1.2e-08 Score=88.08 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=66.4
Q ss_pred CeEEEECCCCCHHHHHHH----Hc-----CCCcEEEecCCCC--------------------------------------
Q 025148 112 SKALCIGARVGQEVEALK----RV-----GVSDSVGIDLVPY-------------------------------------- 144 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~----~~-----~~~~v~gvD~s~~-------------------------------------- 144 (257)
-+|+..||++|.-...++ +. ...+|+|+|+|+.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 599999999997654433 32 1357999999944
Q ss_pred --------CCcEEEecCCCCCCC-CCchhHHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEe
Q 025148 145 --------PPLVIEGDFHRQPFD-DETFDFEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 --------~~~~~~~d~~~~~~~-~~~fD~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.+.|+.+.+++ .+.||+|+| |++.|+. ...++++.+++.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 235666677665443 578999999 8999985 46679999999999999988854
No 142
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=5.4e-09 Score=86.17 Aligned_cols=138 Identities=22% Similarity=0.362 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------------------------------
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------------------------------- 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------------------------------- 144 (257)
..+..+|||||.+|.++..+++. +...|+|+||++.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35678999999999999999985 6668999999954
Q ss_pred -------CC-------cEEEecCCCCCCCCCchhHHHH-HHh--hccc----cHHHHHHHHHHhccCCcEEEEEecc---
Q 025148 145 -------PP-------LVIEGDFHRQPFDDETFDFEFS-NVF--DHAL----YPDKFVMEIERTLKPGGVCVLHVAL--- 200 (257)
Q Consensus 145 -------~~-------~~~~~d~~~~~~~~~~fD~V~~-~~l--~h~~----~~~~~l~~~~r~LkpgG~l~i~~~~--- 200 (257)
++ .....|+. .+....||+|+| .+- -|+. -..++++.+.+.|.|||+|+++---
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks 214 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS 214 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence 00 00011111 233457999988 322 2232 4568999999999999999997311
Q ss_pred ----CCCcCcCCCC---CcCChhHHHHhcccC--CcEEEEEe--------cCCCCceEEEEEcccc
Q 025148 201 ----SKRADKYSAN---DLFSVKPLVKLFKRS--EMVRVRKV--------DGFGLDTEVVFRKNAK 249 (257)
Q Consensus 201 ----~~~~~~y~~~---~~~~~~~~~~~f~~~--~~~~~~~~--------~gf~~~~~vv~~k~~~ 249 (257)
.+.......| -.+.++....++.+. ++...... .||+ -...+++|++.
T Consensus 215 Y~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~skgf~-R~i~~y~Kk~~ 279 (288)
T KOG2899|consen 215 YKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASKGFD-RPILLYRKKLH 279 (288)
T ss_pred HHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccccccCcccc-ceeeeeeccCC
Confidence 0001111111 223666677766665 33333322 1555 25677887664
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=1.1e-08 Score=93.97 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=68.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~ 168 (257)
..++.+|||+|||+|..+..+++. +.++|+++|+++. ++.++++|+.+.. ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 367789999999999999998874 3569999999965 3567788887653 33 67999976
Q ss_pred HH-------hhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 169 NV-------FDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 169 ~~-------l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+. +.+-+ ...++++++.+.|||||.++.+++.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 41 11111 1135789999999999999988753
No 144
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.74 E-value=6e-09 Score=85.16 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=59.6
Q ss_pred CCCeEEEECCCCCHHHHHHH----Hc-----C-CCcEEEecCCCC-----------------------------------
Q 025148 110 NESKALCIGARVGQEVEALK----RV-----G-VSDSVGIDLVPY----------------------------------- 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~----~~-----~-~~~v~gvD~s~~----------------------------------- 144 (257)
..-+|+..||++|.-...++ +. + ..+|+|+|+|+.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 44699999999997654433 31 2 358999999954
Q ss_pred --------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccH--HHHHHHHHHhccCCcEEEEEe
Q 025148 145 --------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP--DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 --------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+...|+.+.+...+.||+|+| ||+-++... .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 567888888884445678999999 798888744 568999999999999999964
No 145
>PRK01581 speE spermidine synthase; Validated
Probab=98.74 E-value=7.9e-09 Score=91.17 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=65.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCCC----------------------CcEEEecCCCC-CCCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPYP----------------------PLVIEGDFHRQ-PFDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~----------------------~~~~~~d~~~~-~~~~~~fD 164 (257)
....+||+||||+|..+..+.+. +..+|+++|++++. +.++.+|+.+. .-.+++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45679999999999999888886 45699999999761 22334444432 23346799
Q ss_pred HHHHHHhhccc------cHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHAL------YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~------~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+++..+... .-.++++.+++.|+|||++++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99887433221 22568899999999999998874
No 146
>PRK03612 spermidine synthase; Provisional
Probab=98.70 E-value=2.4e-08 Score=93.50 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCC-CcEEEecCCCC----------------------CCcEEEecCCCC-CCCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGV-SDSVGIDLVPY----------------------PPLVIEGDFHRQ-PFDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~----------------------~~~~~~~d~~~~-~~~~~~fD 164 (257)
+++.+|||||||+|..+..+.+.+. .+|+++|++++ +++++.+|..+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 5678999999999999999888754 69999999865 234455665542 22346899
Q ss_pred HHHHHHhhcc------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 165 FEFSNVFDHA------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 165 ~V~~~~l~h~------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
+|+++..+.. ...+++++.+++.|||||+++++..... +.. -...++.+.+++.||
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~----~~~---~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY----FAP---KAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc----cch---HHHHHHHHHHHHcCC
Confidence 9988733221 1234688999999999999998763211 100 023456666777777
No 147
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.69 E-value=2.1e-08 Score=84.47 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=66.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-C-----CCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-----FDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-----~~~~~fD 164 (257)
.++.+|||+|||+|..+..++.. +.++|+++|++++ .+.++.+|+.+. + .++++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 45779999999999988888763 4579999999976 356777777653 1 1246899
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+.+.-. ......+..+.+.|+|||++++.-
T Consensus 147 ~VfiDa~k--~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDADK--PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 99875321 234467899999999999988753
No 148
>PLN02366 spermidine synthase
Probab=98.69 E-value=1.6e-08 Score=88.24 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=67.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC-------------------CCcEEEecCCCC--CCCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY-------------------PPLVIEGDFHRQ--PFDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~-------------------~~~~~~~d~~~~--~~~~~~fD~ 165 (257)
.....+||+||||.|..+..+++.+ ..+|+.+|+++. ++.++.+|.... ..++++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3567899999999999999999874 458999999864 345666675432 123568999
Q ss_pred HHHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+++...+.. ...++++.+++.|+|||+++...
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9886443321 23468899999999999998764
No 149
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=6.8e-08 Score=81.69 Aligned_cols=88 Identities=27% Similarity=0.372 Sum_probs=73.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CC-cEEEecCCCCCCCCCchhHHHH-HHhhcccc--
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PP-LVIEGDFHRQPFDDETFDFEFS-NVFDHALY-- 176 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~-~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~-- 176 (257)
..+..++|+|||.|..... .+.+-++|.|++.. .. ....+|+..+|+.+.+||.+++ .++||+..
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 4588999999999977543 25567899999865 33 5788999999999999999988 69999973
Q ss_pred -HHHHHHHHHHhccCCcEEEEEec
Q 025148 177 -PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 177 -~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..++++++.|+|+|||...+.++
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEe
Confidence 45689999999999999888875
No 150
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.67 E-value=1.1e-08 Score=83.87 Aligned_cols=128 Identities=19% Similarity=0.239 Sum_probs=82.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
...++||.|||-|..+..+.-.-..+|--+|.++. ...+.+..++++..+.++||+|.+. ++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 34699999999999998775543458888888755 1245556666665556799999996 9999
Q ss_pred ccc--HHHHHHHHHHhccCCcEEEEEeccCCCcC-cCCC--CCcC-ChhHHHHhcccCCcEEEEEec--CCC
Q 025148 174 ALY--PDKFVMEIERTLKPGGVCVLHVALSKRAD-KYSA--NDLF-SVKPLVKLFKRSEMVRVRKVD--GFG 237 (257)
Q Consensus 174 ~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~y~~--~~~~-~~~~~~~~f~~~~~~~~~~~~--gf~ 237 (257)
+.| ..++++.+...|+|||++++-........ .|.. +.+. +...+.++|+++|+..+.... ||-
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFP 206 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCC
Confidence 985 45789999999999999999754332211 2222 2222 677899999999998777653 664
No 151
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.66 E-value=1e-07 Score=87.60 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=64.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC----CCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ----PFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~----~~~~~~fD~V~~ 168 (257)
..++.+|||+|||+|.++..+++.. .+|+|+|+|+. ++.+.++|+.+. ++.+++||+|++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 4577899999999999999999876 59999999976 357888887642 345678999987
Q ss_pred H-HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 N-VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+ --.- ..+.++.+.+ ++|+++++++.
T Consensus 374 dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 374 DPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 6 1111 1245555555 69999999987
No 152
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.65 E-value=1.3e-08 Score=83.25 Aligned_cols=89 Identities=22% Similarity=0.279 Sum_probs=64.0
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCC---CCCCCchhHHHHHH-
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQ---PFDDETFDFEFSNV- 170 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~---~~~~~~fD~V~~~~- 170 (257)
...+||||||.|.++..++.. +...++|+|+... ++.++++|+... -++++++|-|+.+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 348999999999999999985 7889999999865 678888888763 24456677653320
Q ss_pred -----hhccc---cHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 -----FDHAL---YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 -----l~h~~---~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
-.|.. --..+++.+.++|+|||.+.+.+-
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 11111 124689999999999999999884
No 153
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.65 E-value=1.6e-08 Score=89.93 Aligned_cols=92 Identities=33% Similarity=0.399 Sum_probs=81.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
..++.+++|+|||-|......+....+.++|+|.++. ...+..+|+...|+++++||.+.+ .+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 4677799999999999999999887789999999965 234578899999999999999988 69
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+|.+++..+++|++|++||||+.+....
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 99999999999999999999999998753
No 154
>PLN02672 methionine S-methyltransferase
Probab=98.65 E-value=4.2e-08 Score=97.42 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=76.9
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------------------CCcEEEecCCCCCC
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------------------PPLVIEGDFHRQPF 158 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------------------~~~~~~~d~~~~~~ 158 (257)
+.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.++++|+.+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999885 4569999999966 13566777665321
Q ss_pred C-CCchhHHHHH--Hh-------------hcc------------c------------cHHHHHHHHHHhccCCcEEEEEe
Q 025148 159 D-DETFDFEFSN--VF-------------DHA------------L------------YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 159 ~-~~~fD~V~~~--~l-------------~h~------------~------------~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ...||+|+|| .+ +|- . -..+++++..++|||||.+++.+
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 1369999887 21 110 0 01567788899999999999988
Q ss_pred ccCCCcCcCCCCCcCChhHHH-HhcccCCcEEEE
Q 025148 199 ALSKRADKYSANDLFSVKPLV-KLFKRSEMVRVR 231 (257)
Q Consensus 199 ~~~~~~~~y~~~~~~~~~~~~-~~f~~~~~~~~~ 231 (257)
... ..+.+. ++|++.||....
T Consensus 279 G~~------------q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 279 GGR------------PGQAVCERLFERRGFRITK 300 (1082)
T ss_pred Ccc------------HHHHHHHHHHHHCCCCeeE
Confidence 422 255677 588887765433
No 155
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.65 E-value=1.3e-07 Score=83.25 Aligned_cols=86 Identities=13% Similarity=-0.041 Sum_probs=60.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCC-CCCchhHHHHHHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF-DDETFDFEFSNVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~~l~h 173 (257)
++.+|||+|||+|.++..+++.+ .+|+|+|+++. ++.++++|+.++.. .+++||+|+++-=.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr- 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR- 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC-
Confidence 46899999999999999999876 59999999976 35688888876532 23579998876100
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
- .....+.++...++|+++++++.
T Consensus 251 ~-G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 251 R-GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred C-CccHHHHHHHHHcCCCeEEEEEC
Confidence 0 01122333344478888888876
No 156
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.64 E-value=8.6e-08 Score=80.99 Aligned_cols=92 Identities=22% Similarity=0.200 Sum_probs=71.0
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC--------CCCcEEEecCCCCCCCCCchhHHHH-HHhhcc
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP--------YPPLVIEGDFHRQPFDDETFDFEFS-NVFDHA 174 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~ 174 (257)
........+|+|||+|.|.++..+++. +..+++..|.-. .++.++.+|+. -++|. +|+++. +++|+.
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhc
Confidence 334466679999999999999999874 788999999742 26889999998 66666 999766 799888
Q ss_pred ccH--HHHHHHHHHhccCC--cEEEEEec
Q 025148 175 LYP--DKFVMEIERTLKPG--GVCVLHVA 199 (257)
Q Consensus 175 ~~~--~~~l~~~~r~Lkpg--G~l~i~~~ 199 (257)
.+. .++|+++++.|+|| |+++|...
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 754 46789999999999 99998754
No 157
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.63 E-value=2.6e-08 Score=96.30 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCC-CCCCchhHHHHH--
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQP-FDDETFDFEFSN-- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~-~~~~~fD~V~~~-- 169 (257)
++.+|||+|||+|.++..++..|..+|+++|+|+. .+.++++|+.+.- -..++||+|+++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999999877667999999966 2456778865431 114689999885
Q ss_pred Hhh----------ccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 VFD----------HALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~----------h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+. ...+..+++..+.+.|+|||.+++.+.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 221 123455678889999999999988764
No 158
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.63 E-value=3.6e-08 Score=84.83 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=63.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCCC-------------------CcEEEecCCCC-CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPYP-------------------PLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~-------------------~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
..+.+||+||||+|..+..+.+.+ ..+++++|+++.. +.+..+|..+. .-.+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 445699999999999998888764 5689999999661 22333343221 11246899998
Q ss_pred HHHhhccc---c--HHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHAL---Y--PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~---~--~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++...+.. + ..++++.+.+.|+|||++++..
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 86432221 1 4578899999999999999874
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.60 E-value=5e-08 Score=89.34 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=61.9
Q ss_pred CCeEEEECCCCCHHHHHHHHcC-----CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRVG-----VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
+..|+|||||+|.++...++.+ ..+|++|+-|+. .+.++.+|++++..+. ++|+|+|.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 5689999999999998776643 469999999865 5789999999998765 79999997
Q ss_pred Hhhcccc---HHHHHHHHHHhccCCcEEE
Q 025148 170 VFDHALY---PDKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 170 ~l~h~~~---~~~~l~~~~r~LkpgG~l~ 195 (257)
.+..+.+ -.+.+....|.|||||+++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5544432 2246788889999999776
No 160
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.58 E-value=4.2e-08 Score=88.64 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=65.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCC--C--CCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQP--F--DDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~--~--~~~~fD~V~ 167 (257)
.++.+|||+|||+|.++..++..+..+|+++|+|+. .+.++++|+.+.- + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 357899999999999988766656569999999966 2356778876541 1 246899998
Q ss_pred HH--Hhhc--------cccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN--VFDH--------ALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~--~l~h--------~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ .+.. ..+..++++...++|+|||.++...+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 87 2211 11334556678899999999998764
No 161
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=5.4e-07 Score=73.48 Aligned_cols=94 Identities=23% Similarity=0.325 Sum_probs=70.3
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHHHH-
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFSNV- 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~- 170 (257)
.+++++.+|+|+||.+|.+++.+++. ....|+|+|+.|- ++.++++|+.+-+ +....+|+|+|+.
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence 45688999999999999999999986 2345999999976 6788999998754 3445579998751
Q ss_pred --------hhcccc---HHHHHHHHHHhccCCcEEEEEec
Q 025148 171 --------FDHALY---PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 --------l~h~~~---~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+|... -..++.-+..+|+|||.+++-+-
T Consensus 121 p~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 121 PNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 223221 12345666789999999999774
No 162
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.57 E-value=5.4e-08 Score=79.84 Aligned_cols=89 Identities=9% Similarity=-0.009 Sum_probs=62.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC-CCCCCchhHHHHH-Hhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ-PFDDETFDFEFSN-VFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~-~~~~~~fD~V~~~-~l~ 172 (257)
.+.+|||+|||+|.++..+...+..+|+++|+++. ++.++++|+.+. +...++||+|+++ -+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy- 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF- 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC-
Confidence 56799999999999998765555569999999966 355677776553 2234569999987 21
Q ss_pred ccccHHHHHHHHHH--hccCCcEEEEEec
Q 025148 173 HALYPDKFVMEIER--TLKPGGVCVLHVA 199 (257)
Q Consensus 173 h~~~~~~~l~~~~r--~LkpgG~l~i~~~ 199 (257)
+-.-..++++.+.+ +|+|+|+++++..
T Consensus 132 ~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 11223345565555 3799999999874
No 163
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.54 E-value=2.9e-07 Score=78.59 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=67.6
Q ss_pred CCeEEEECCCCCHHHHH----HHHc-C-----CCcEEEecCCCC------------------------------------
Q 025148 111 ESKALCIGARVGQEVEA----LKRV-G-----VSDSVGIDLVPY------------------------------------ 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~----l~~~-~-----~~~v~gvD~s~~------------------------------------ 144 (257)
.-+|+-.||++|.-... +.+. + ..+|+|+|+|..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 56999999999965433 3332 2 468999999943
Q ss_pred --------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccH--HHHHHHHHHhccCCcEEEEEe
Q 025148 145 --------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP--DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 --------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.+.|+..-++..+.||+|+| ||+-++..+ .++++.++..|+|||+|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 456777777766634567999999 888888754 468999999999999999954
No 164
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.53 E-value=7.6e-07 Score=75.93 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=103.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhc----CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------
Q 025148 83 WTTRDWDRKIQVFAKFFDDLKRKKL----LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------- 144 (257)
Q Consensus 83 w~~~~w~~~~~~~~~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------- 144 (257)
|+...-.++...+..++..+..... -+...+||--|||-|.++..++..|. .+.|.|.|-.
T Consensus 25 WS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~ 103 (270)
T PF07942_consen 25 WSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQ 103 (270)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCC
Confidence 7666555666666555555543322 13456999999999999999999987 9999999821
Q ss_pred -----------------------------------------CCcEEEecCCCCCCCC---CchhHHHHH-HhhccccHHH
Q 025148 145 -----------------------------------------PPLVIEGDFHRQPFDD---ETFDFEFSN-VFDHALYPDK 179 (257)
Q Consensus 145 -----------------------------------------~~~~~~~d~~~~~~~~---~~fD~V~~~-~l~h~~~~~~ 179 (257)
+.....||+.+.-.++ ++||+|+.. .++-..+.-+
T Consensus 104 ~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~ 183 (270)
T PF07942_consen 104 PNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIE 183 (270)
T ss_pred CCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHH
Confidence 2355667777664444 789998664 5555567778
Q ss_pred HHHHHHHhccCCcEEEEEeccCCCcCcC----CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 180 FVMEIERTLKPGGVCVLHVALSKRADKY----SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~~~~~~~~~~y----~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.++.|.++|||||+.+=.-|..-+.... ...--++.+++..+.++.||..+.+..
T Consensus 184 Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 184 YIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9999999999999655444543221111 000224889999999999997766543
No 165
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=7.2e-07 Score=75.08 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=64.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC----------------CCcEEEecCC-----CCCCCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY----------------PPLVIEGDFH-----RQPFDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~----------------~~~~~~~d~~-----~~~~~~~~fD~V 166 (257)
..+..+||+|||+|.++..++. .+.+.|+++|.|+. .+.++..+.+ ..+..++++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999998887 47889999999976 3344433222 224556889998
Q ss_pred HHH--Hhhccc-------------------------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSN--VFDHAL-------------------------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~--~l~h~~-------------------------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+|| .+-+-+ ....++.-+.|.|+|||.+.+.+.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 887 332211 122345667899999999999875
No 166
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.46 E-value=7.9e-08 Score=77.64 Aligned_cols=90 Identities=27% Similarity=0.365 Sum_probs=59.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC----CCcEEEecCCCCC--------CC--CCchhHHHHHHh-h
Q 025148 110 NESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY----PPLVIEGDFHRQP--------FD--DETFDFEFSNVF-D 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~--~~~fD~V~~~~l-~ 172 (257)
.+.++||+||++|.++..+.+.. ..+|+|+|+.+. .+..+++|+.+.. +. .+.||+|+|+.- .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN 102 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence 34899999999999999999976 579999999976 2334445543321 11 268999988631 1
Q ss_pred --------ccc---cHHHHHHHHHHhccCCcEEEEEec
Q 025148 173 --------HAL---YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 173 --------h~~---~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+.. --...+.-+.+.|||||.+++-+-
T Consensus 103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 111 112234555678999999998764
No 167
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.45 E-value=6.2e-07 Score=75.01 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=55.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCc---EEEecCCCCCCCC-----CchhHHHHHHhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPL---VIEGDFHRQPFDD-----ETFDFEFSNVFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~---~~~~d~~~~~~~~-----~~fD~V~~~~l~ 172 (257)
.++.++||+|||+|.++..+++.|..+|+|+|+++. +.. +...|+.....++ ..+|+++...
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~-- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL-- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh--
Confidence 467799999999999999999987779999999984 111 2333444332222 2455443321
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...+..+.+.|++ |.+++-+
T Consensus 152 -----~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 152 -----ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred -----HhHHHHHHHHhCc-CeEEEEc
Confidence 1357889999999 7766554
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.45 E-value=1.7e-07 Score=78.25 Aligned_cols=84 Identities=24% Similarity=0.297 Sum_probs=64.1
Q ss_pred CeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCC---CCCCCchhHHHHHHhh
Q 025148 112 SKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQ---PFDDETFDFEFSNVFD 172 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~---~~~~~~fD~V~~~~l~ 172 (257)
..+||||||.|.+...+|+. +...++|||+... ++.+++.|+..+ -+++++.|-|+-+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE---
Confidence 58999999999999999985 8889999999855 456667776654 2344467765332
Q ss_pred ccccH-------------HHHHHHHHHhccCCcEEEEEec
Q 025148 173 HALYP-------------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 173 h~~~~-------------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++|| ..+++.+.++|||||.+.+.+-
T Consensus 127 -FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 127 -FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 2222 3689999999999999999984
No 169
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.44 E-value=4.1e-07 Score=73.07 Aligned_cols=92 Identities=23% Similarity=0.276 Sum_probs=61.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-----------------CCcEEEecCCCCC----CCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-----------------PPLVIEGDFHRQP----FDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~----~~~~~fD~ 165 (257)
...+.+|||+|||+|..+..++.. +..+|+..|.++. .+.+...+..+.. ...++||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 456789999999999999999987 6679999998754 2233333333211 23467999
Q ss_pred HHH-HHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|++ +++..-...+.+++.+.+.|+++|.+++..+
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 888 6777667777889999999999999777765
No 170
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.4e-07 Score=74.12 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC-------------------------CC
Q 025148 95 FAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY-------------------------PP 146 (257)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~-------------------------~~ 146 (257)
++..++.| ...+++|.+.||+|.|+|+++..++.. ....++|||.-++ ..
T Consensus 69 ha~~le~L--~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 69 HATALEYL--DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHH--HHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 44555554 334688999999999999999888753 2335589987654 45
Q ss_pred cEEEecCCCCCCCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 147 LVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 147 ~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.++.+|.....-+.+.||.|.+.. ...+.-+++...|++||.+++-.
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGA-----aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGA-----AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EEEeCCccccCCccCCcceEEEcc-----CccccHHHHHHhhccCCeEEEee
Confidence 678888888877788999998861 12256678888999999999855
No 171
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.42 E-value=2.6e-07 Score=79.55 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=51.1
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
...+.++.+|||||||+|.++..+++.+. +|+|+|+++. ++.++++|+.++++++-.+|.|++|
T Consensus 37 ~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 37 AAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred hcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 33456788999999999999999999865 9999999976 4568889998887654324677776
No 172
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=6.9e-07 Score=78.11 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=75.6
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEe-cCCCCCCCCCchhH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEG-DFHRQPFDDETFDF 165 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~-d~~~~~~~~~~fD~ 165 (257)
+......++|..|||==||||.++..+.-.|. +++|+|++.. ...+... |+.++|+++++||.
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccce
Confidence 33345568899999999999999999887775 9999999965 2223444 99999999999999
Q ss_pred HHHH------Hhhccc----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSN------VFDHAL----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~------~l~h~~----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++ +--... -..++++.+.++||+||++++..|
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9775 101111 145789999999999999999887
No 173
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=6.5e-06 Score=65.37 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH---Hh
Q 025148 111 ESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN---VF 171 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~---~l 171 (257)
...+||||||+|..+.+|++. +..-+.++|+|+. .+..++.|+..- +..+++|+++-| +.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 578999999999999999985 5667899999987 345566665542 222566654332 10
Q ss_pred --------h-----cc--cc----HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 172 --------D-----HA--LY----PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 172 --------~-----h~--~~----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+ +. .+ ..+++..+-..|.|.|++++..-... .++++.++.+..++.
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N-----------~p~ei~k~l~~~g~~ 187 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN-----------KPKEILKILEKKGYG 187 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc-----------CHHHHHHHHhhcccc
Confidence 1 11 11 23566777788899999998764332 478888888888764
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.37 E-value=4.5e-07 Score=77.53 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=53.3
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
...+.++.+|||||||+|.++..+++.+ .+|+|+|+++. ++.++++|+.+++++ .||.|++|.-
T Consensus 24 ~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 24 YAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred hcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCC
Confidence 3335678899999999999999999975 48999999965 467889999888765 3799988844
Q ss_pred hcc
Q 025148 172 DHA 174 (257)
Q Consensus 172 ~h~ 174 (257)
.++
T Consensus 101 y~i 103 (258)
T PRK14896 101 YQI 103 (258)
T ss_pred ccc
Confidence 344
No 175
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.32 E-value=6.1e-07 Score=82.28 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=62.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC----CCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ----PFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~----~~~~~~fD~V~~ 168 (257)
+.++.+|||+|||+|.++..+++.. .+|+|+|+++. ++.++.+|+.+. ++.+++||+|+.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 4567899999999999999999865 48999999976 456788887652 234567999876
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+-=. ..-..++++.+.+ ++|++.++++.
T Consensus 369 dPPr-~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 369 DPPR-KGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CcCC-CCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 4100 0002356666554 89999888865
No 176
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.32 E-value=1.4e-06 Score=74.22 Aligned_cols=70 Identities=23% Similarity=0.249 Sum_probs=52.8
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchh-
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFD- 164 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD- 164 (257)
...++......++.+|||||||+|.++..+++.+. +++++|+++. ++.++.+|+.+.+++ .+|
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~ 94 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPK 94 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCC
Confidence 33333333456788999999999999999999764 7999999866 356788898888765 466
Q ss_pred --HHHHHHh
Q 025148 165 --FEFSNVF 171 (257)
Q Consensus 165 --~V~~~~l 171 (257)
+|++|.-
T Consensus 95 ~~~vvsNlP 103 (253)
T TIGR00755 95 QLKVVSNLP 103 (253)
T ss_pred cceEEEcCC
Confidence 6777743
No 177
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=2.2e-06 Score=66.20 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=56.2
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHH-HHhhccccHH--HHHHHHHHhcc
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPD--KFVMEIERTLK 189 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~--~~l~~~~r~Lk 189 (257)
-.+-||||.=.+. +....+-+.-.+ .+..++......+|.+++.|+|++ ++++|+...+ .++++++|.||
T Consensus 5 ~kv~ig~G~~r~n------pgWi~~d~ed~~-~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr 77 (185)
T COG4627 5 EKVKIGAGGKRVN------PGWIITDVEDRP-EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR 77 (185)
T ss_pred eEEEEeccccccC------CCceeeehhccc-ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 3577999952221 111222222222 233333334456899999999999 6999998544 57899999999
Q ss_pred CCcEEEEEeccCC
Q 025148 190 PGGVCVLHVALSK 202 (257)
Q Consensus 190 pgG~l~i~~~~~~ 202 (257)
|||++-+++|..+
T Consensus 78 p~G~LriAvPdl~ 90 (185)
T COG4627 78 PGGKLRIAVPDLK 90 (185)
T ss_pred cCcEEEEEcCCcc
Confidence 9999999998654
No 178
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.27 E-value=2.8e-06 Score=76.48 Aligned_cols=85 Identities=8% Similarity=-0.061 Sum_probs=60.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCC-CCCchhHHHHH-Hhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF-DDETFDFEFSN-VFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~-~l~ 172 (257)
++.+|||+|||+|.++..++..+ .+|+|+|+++. ++.+..+|+.+... ..++||+|+.+ --.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999999766 59999999976 35677778765321 12458998776 111
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+ ..++++.+. .++|+++++++.
T Consensus 312 G~--~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 312 GI--GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CC--cHHHHHHHH-hcCCCeEEEEEe
Confidence 11 234555554 479999999987
No 179
>PLN02476 O-methyltransferase
Probab=98.25 E-value=1.3e-06 Score=74.90 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=65.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-C-C----CCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-F----DDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~----~~~~fD 164 (257)
.+..+|||||||+|..+..++.. ..++|+++|.+++ .+.++.+|+.+. + + .+++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 45789999999999999999873 3458999999976 456777776542 1 1 236899
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+||.+.-. .+....++.+.+.|+|||.+++.
T Consensus 197 ~VFIDa~K--~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDADK--RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCcEEEEe
Confidence 99775221 23457788889999999999886
No 180
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.6e-06 Score=69.39 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=47.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
-.|..|+|+|||||.++...+-.|..+|+|+|++++ .+.+..+|+.+.. ..+|.|+.|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEEC
Confidence 356789999999999999998888889999999987 4677788877653 457777666
No 181
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.24 E-value=2.8e-06 Score=74.32 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=66.7
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHHHHHHhhccccHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPD 178 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~ 178 (257)
.+.+|.++||+||++|.++..+.+.|. +|+|||..+- .+....+|......+.+.+|.++|++.+ .|.
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~ 283 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPA 283 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHH
Confidence 457899999999999999999999886 9999997754 3555666655543236789999998654 577
Q ss_pred HHHHHHHHhccCC--cEEEEEe
Q 025148 179 KFVMEIERTLKPG--GVCVLHV 198 (257)
Q Consensus 179 ~~l~~~~r~Lkpg--G~l~i~~ 198 (257)
++.+-+.++|..| ...++..
T Consensus 284 rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 284 RVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred HHHHHHHHHHhcCcccEEEEEE
Confidence 8888888888776 3444443
No 182
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.23 E-value=5.3e-07 Score=74.27 Aligned_cols=87 Identities=25% Similarity=0.298 Sum_probs=64.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-C-----CCCCchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-----FDDETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-----~~~~~fD~ 165 (257)
...+||||||+.|+-+..+++. ..++|+.+|++++ .+.++.+|..+. + .+.++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4579999999999999999984 3579999999976 466777877652 1 12357999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
||.+.-. .+....+..+.+.|+|||++++.-
T Consensus 125 VFiDa~K--~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDADK--RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEESTG--GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcccc--cchhhHHHHHhhhccCCeEEEEcc
Confidence 9875211 234467788889999999999864
No 183
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.23 E-value=8.2e-07 Score=71.82 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=66.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCC------cEEEecCCCCCCCCCchhHHHH-HHhhccccHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPP------LVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFV 181 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~------~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~~l 181 (257)
+...++||+|+|.|.++..++..- .+|++.+.|..+. .+......++---+-++|+|.| |.++...+|-+.+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL 189 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLL 189 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHH
Confidence 345699999999999999988743 3789999886511 1111112222223446999999 8999999999999
Q ss_pred HHHHHhccC-CcEEEEEe
Q 025148 182 MEIERTLKP-GGVCVLHV 198 (257)
Q Consensus 182 ~~~~r~Lkp-gG~l~i~~ 198 (257)
+.|+.+|+| +|.+++..
T Consensus 190 ~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 190 EDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHhccCCCcEEEEE
Confidence 999999999 89888763
No 184
>PLN02823 spermine synthase
Probab=98.23 E-value=1.3e-06 Score=77.12 Aligned_cols=90 Identities=23% Similarity=0.324 Sum_probs=65.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
....+||.||+|.|..+..+.+. +..+|+.+|+++. ++.++.+|.... .-.+++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999988875 4568999999976 234555555442 23356899998
Q ss_pred HHHhhccc-------cHHHHHH-HHHHhccCCcEEEEEe
Q 025148 168 SNVFDHAL-------YPDKFVM-EIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~-------~~~~~l~-~~~r~LkpgG~l~i~~ 198 (257)
.++..... ...++++ .+.+.|+|||++++..
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 87543221 2346787 8999999999998864
No 185
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.23 E-value=1.6e-06 Score=70.68 Aligned_cols=89 Identities=12% Similarity=-0.040 Sum_probs=61.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCC-C-C-CC-CchhHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-F-DD-ETFDFEFSN 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~-~~-~~fD~V~~~ 169 (257)
.+.++||++||+|.++..++.++...|+++|.++. .+.++++|+.+. . + .. ..||+|+.+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 57899999999999999999988779999999966 235677777432 1 1 12 237777765
Q ss_pred -HhhccccHHHHHHHHH--HhccCCcEEEEEec
Q 025148 170 -VFDHALYPDKFVMEIE--RTLKPGGVCVLHVA 199 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~--r~LkpgG~l~i~~~ 199 (257)
-+. -....+.++.+. .+|+++|+++++..
T Consensus 129 PPy~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFF-NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCC-CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 221 122334455443 36899999988764
No 186
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.19 E-value=4.8e-06 Score=67.22 Aligned_cols=115 Identities=19% Similarity=0.121 Sum_probs=74.6
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCc---------EEEecCCCC----------------CCcEEEecCCCCCC
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSD---------SVGIDLVPY----------------PPLVIEGDFHRQPF 158 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~---------v~gvD~s~~----------------~~~~~~~d~~~~~~ 158 (257)
....+++..+||--||+|.+....+.. .... ++|.|+++. .+.+.+.|+.++++
T Consensus 23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL 102 (179)
T ss_dssp HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence 333467889999999999999887664 2333 889999976 35678889999998
Q ss_pred CCCchhHHHHH--Hhhccc-------cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 159 DDETFDFEFSN--VFDHAL-------YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 159 ~~~~fD~V~~~--~l~h~~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
.++++|.|++| .-.-+. -..++++++.++|++ ..+++.. ....+.+.+...++..
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~---------------~~~~~~~~~~~~~~~~ 166 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT---------------SNRELEKALGLKGWRK 166 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE---------------SCCCHHHHHTSTTSEE
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE---------------CCHHHHHHhcchhhce
Confidence 88899999887 111111 123567899999999 4444433 2335566677777766
Q ss_pred EEEecC
Q 025148 230 VRKVDG 235 (257)
Q Consensus 230 ~~~~~g 235 (257)
.....|
T Consensus 167 ~~~~~~ 172 (179)
T PF01170_consen 167 RKLYNG 172 (179)
T ss_dssp EEEEET
T ss_pred EEEEEe
Confidence 655543
No 187
>PRK04148 hypothetical protein; Provisional
Probab=98.18 E-value=2.4e-06 Score=65.21 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=55.7
Q ss_pred CCCCeEEEECCCCCH-HHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCC-CCchhHHHHHHhhccccHH
Q 025148 109 SNESKALCIGARVGQ-EVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFD-DETFDFEFSNVFDHALYPD 178 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~-~~~fD~V~~~~l~h~~~~~ 178 (257)
.++.++||||||+|. ++..|++.|. +|+|+|+++. ...++.+|+.+..+. -+.+|+|++- .-|.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysi-----rpp~ 88 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSI-----RPPR 88 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEe-----CCCH
Confidence 346799999999996 8888888775 9999999988 356788888765432 2346666552 2234
Q ss_pred HHHHHHHHhccC-CcEEEEE
Q 025148 179 KFVMEIERTLKP-GGVCVLH 197 (257)
Q Consensus 179 ~~l~~~~r~Lkp-gG~l~i~ 197 (257)
++..-+.++-|. |.-++|.
T Consensus 89 el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 89 DLQPFILELAKKINVPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 455555554444 3445554
No 188
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.17 E-value=1.4e-06 Score=81.24 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=63.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCC--CCCCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQ--PFDDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~ 170 (257)
..+..+||||||.|.++..++.. +...++|+|+... ++.++..|+..+ -++++++|-|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~- 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL- 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE-
Confidence 34568999999999999999885 7789999999865 334444444322 2556666655332
Q ss_pred hhccccH-------------HHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHALYP-------------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~~~-------------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++|| ..+++.+.++|||||.+.+.+-
T Consensus 425 ---FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 425 ---FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred ---CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 2332 3689999999999999999884
No 189
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.15 E-value=1.8e-06 Score=75.77 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-----------C------CcEEE-ecCCCC----CCCCCchhHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-----------P------PLVIE-GDFHRQ----PFDDETFDFE 166 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-----------~------~~~~~-~d~~~~----~~~~~~fD~V 166 (257)
.+.++||||||+|.+...++.. ...+++|+|+++. + +.+.. .+..++ ..+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999999888877664 4569999999976 2 22221 222222 1246789999
Q ss_pred HHH--Hhhcccc----HHHHHHH----------------HHHhccCCcEEEEEeccCCCcCcCCCC---------CcCCh
Q 025148 167 FSN--VFDHALY----PDKFVME----------------IERTLKPGGVCVLHVALSKRADKYSAN---------DLFSV 215 (257)
Q Consensus 167 ~~~--~l~h~~~----~~~~l~~----------------~~r~LkpgG~l~i~~~~~~~~~~y~~~---------~~~~~ 215 (257)
+|| .+....+ ..+-.+. ....+.+||.+.+..+.......+... ..-+.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l 273 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENL 273 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCH
Confidence 998 3332222 1111222 223455788776665421110000000 11267
Q ss_pred hHHHHhcccCCcEEEEEe
Q 025148 216 KPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 216 ~~~~~~f~~~~~~~~~~~ 233 (257)
..+.+.+++.+...+...
T Consensus 274 ~~l~~~L~~~~~~~~~~~ 291 (321)
T PRK11727 274 PPLYRALKKVGAVEVKTI 291 (321)
T ss_pred HHHHHHHHHcCCceEEEE
Confidence 888888888888655544
No 190
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.15 E-value=2.2e-06 Score=77.67 Aligned_cols=90 Identities=27% Similarity=0.395 Sum_probs=74.3
Q ss_pred CCCC-eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 109 SNES-KALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 109 ~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
.+.. ++|-+|||.-.+...+-+.|...|+.+|+|+. ...+...|...+.|++++||+|+. +.++
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 4444 99999999999999999989889999999965 346778899999999999999988 6777
Q ss_pred ccccH----------HHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYP----------DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~----------~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++..+ ...+.+++|+|++||+.+..+
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 76522 245689999999999977654
No 191
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.14 E-value=2.1e-06 Score=74.66 Aligned_cols=74 Identities=27% Similarity=0.365 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCc
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~ 162 (257)
...++....+.++++|||||||+|.++..+++.+ .+|+|+|+++. ++.++.+|+.+.+++ .
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~ 101 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--Y 101 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--c
Confidence 3344444455778899999999999999999875 48999999954 357888888876653 5
Q ss_pred hhHHHHHHhhccc
Q 025148 163 FDFEFSNVFDHAL 175 (257)
Q Consensus 163 fD~V~~~~l~h~~ 175 (257)
||.|++|.=.++.
T Consensus 102 ~d~VvaNlPY~Is 114 (294)
T PTZ00338 102 FDVCVANVPYQIS 114 (294)
T ss_pred cCEEEecCCcccC
Confidence 8988877333333
No 192
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=1.2e-05 Score=64.09 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=68.5
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----CCcEEEe-cCCCC--------CCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----PPLVIEG-DFHRQ--------PFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~~~~~~~-d~~~~--------~~~~~~fD~V~~~ 169 (257)
-.+++++++|||+||.+|.+++...+. +.+.|.|||+-.- ...++++ |+.+. .+++..+|+|+|+
T Consensus 64 y~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 64 YRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred ccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 345688999999999999999988875 6789999998744 3445555 55542 2577889999886
Q ss_pred Hhhcc-----ccHHH-------HHHHHHHhccCCcEEEEEeccCC
Q 025148 170 VFDHA-----LYPDK-------FVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 170 ~l~h~-----~~~~~-------~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
..+.. .|..+ ++.-....++|+|.+++-++...
T Consensus 144 MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 144 MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 43322 12222 33334456789999999886443
No 193
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.12 E-value=3.2e-06 Score=69.93 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=65.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEE-ecCCCC-C-CCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIE-GDFHRQ-P-FDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~-~d~~~~-~-~~~~~fD~V~ 167 (257)
...++|||||++.|+-+.+|+.. + .++++.+|++++ .+..+. +|..+. . ...++||+||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 46789999999999999999984 4 679999999987 234445 344432 2 3468999997
Q ss_pred HHHhhccc-cHHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHAL-YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~-~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+ +-. +..++++.+.+.|+|||++++.-
T Consensus 138 ID---adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 ID---ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred Ee---CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 64 111 34478999999999999999864
No 194
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=98.11 E-value=2.4e-05 Score=61.01 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=84.0
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEE-EecCCCC---C------CCCCchhHHHH-HHhhccc----
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVI-EGDFHRQ---P------FDDETFDFEFS-NVFDHAL---- 175 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~-~~d~~~~---~------~~~~~fD~V~~-~~l~h~~---- 175 (257)
+++.+-+|...=..=....+.|..+|..+|.++-.+.-. +..+..+ . -..++||++.| +++||..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGRY 81 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGRY 81 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhcccccccc
Confidence 567888888855544444456777899998875422111 1111111 1 12467999988 7999974
Q ss_pred -c---H---HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEE
Q 025148 176 -Y---P---DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 176 -~---~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
| | .+.+.++.++||+||.+++.+|.....-.|..+++|....+..+|...++...
T Consensus 82 GDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~t 143 (177)
T PF03269_consen 82 GDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDT 143 (177)
T ss_pred CCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEee
Confidence 2 2 46889999999999999999998877777888899999888888876655443
No 195
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.10 E-value=6.2e-06 Score=67.17 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=72.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC--CCCCCchhHHHHHHh-
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ--PFDDETFDFEFSNVF- 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~--~~~~~~fD~V~~~~l- 171 (257)
.+|++||.||-|-|.....+.+.+..+-+-|+..+. ++.+..+-.++. .++|+.||-|+-+++
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 678999999999999999998875446677777765 455666655553 577899999998766
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|..+...+.+.+.|.|||+|++-.-
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 88889999999999999999997764
No 196
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.06 E-value=7e-06 Score=75.68 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=67.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~ 169 (257)
.++|.+|||++||+|.-+..+++. +.+.++++|+++. ++.+...|...+. ...+.||.|+.+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 468899999999999999999885 3468999999976 3455566665542 223569988632
Q ss_pred -------Hhhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -------VFDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -------~l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++..-+ -..+++..+.+.|||||+++-+++.
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 332211 1145788899999999999999875
No 197
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.03 E-value=3.8e-06 Score=69.08 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC-------------CCcEEEe
Q 025148 87 DWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY-------------PPLVIEG 151 (257)
Q Consensus 87 ~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~-------------~~~~~~~ 151 (257)
-|......++..+..-+....+++|.+||-+|+++|.....+++. + .+.|+|++.|+. ++.-+..
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~ 129 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILE 129 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeec
Confidence 455544444444433333455689999999999999999999985 4 679999999975 5566777
Q ss_pred cCCCCC---CCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 152 DFHRQP---FDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 152 d~~~~~---~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
|+.... .--+.+|+|++++-+ -.+.+-++.++...||+||.+++.+-.......-..... ..+-.+.+++.+|.
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVaQ-p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~v--f~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVAQ-PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEV--FAEEVKKLKEEGFK 206 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-SS-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHH--HHHHHHHHHCTTCE
T ss_pred cCCChHHhhcccccccEEEecCCC-hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHH--HHHHHHHHHHcCCC
Confidence 776531 112478888887653 233334668888999999999998632110000000001 12233445666665
Q ss_pred EEEEe--cCCCCceEEE
Q 025148 229 RVRKV--DGFGLDTEVV 243 (257)
Q Consensus 229 ~~~~~--~gf~~~~~vv 243 (257)
.+..+ +.|.-+-.++
T Consensus 207 ~~e~i~LePy~~dH~~v 223 (229)
T PF01269_consen 207 PLEQITLEPYERDHAMV 223 (229)
T ss_dssp EEEEEE-TTTSTTEEEE
T ss_pred hheEeccCCCCCCcEEE
Confidence 55544 4777653333
No 198
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.03 E-value=1.1e-05 Score=63.25 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC----------CCcEEEecCCCCC-----CCCCchhHHHHH--
Q 025148 109 SNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY----------PPLVIEGDFHRQP-----FDDETFDFEFSN-- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~----------~~~~~~~d~~~~~-----~~~~~fD~V~~~-- 169 (257)
..|.-|||+|.|+|-++..+.+++ ..++++++.|++ .+.++.+|..++. ..+..||.|+|.
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccc
Confidence 567799999999999999998863 458999999977 4667888887764 567789999986
Q ss_pred Hhhcc-ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHA-LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~-~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+..- ....+.++++...|.+||.++--+
T Consensus 127 ll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 127 LLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 33221 134467899999999999887644
No 199
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.01 E-value=1.7e-05 Score=60.39 Aligned_cols=86 Identities=38% Similarity=0.517 Sum_probs=62.8
Q ss_pred EEEECCCCCHHHHHHHHcCC--CcEEEecCCCC--------C-------CcEEEecCCC--CCCCC-CchhHHHHHHhhc
Q 025148 114 ALCIGARVGQEVEALKRVGV--SDSVGIDLVPY--------P-------PLVIEGDFHR--QPFDD-ETFDFEFSNVFDH 173 (257)
Q Consensus 114 vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~--------~-------~~~~~~d~~~--~~~~~-~~fD~V~~~~l~h 173 (257)
++|+|||+|... .+..... ..++|+|+++. . +.+..++... .++.+ ..||++.+....|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 3333321 37899999864 1 3566777665 67777 4899993343333
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
...+...+.++.+.|+|+|.+++....
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 333788999999999999999998754
No 200
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.01 E-value=4.8e-06 Score=74.99 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=64.2
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhcc
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~ 174 (257)
+.+|||++||+|..+..++.. +..+|+++|+++. ...+.++|+..+....+.||+|+.+-+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 468999999999999999764 5458999999976 233666676543211456999877643
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+..++....+.+++||++.++.
T Consensus 135 Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 345678888788899999999985
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.00 E-value=3.7e-06 Score=68.05 Aligned_cols=96 Identities=25% Similarity=0.202 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCCC-eEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCC
Q 025148 99 FDDLKRKKLLSNES-KALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDE 161 (257)
Q Consensus 99 ~~~l~~~~~~~~~~-~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~ 161 (257)
...+.....+.... +++|||+|.|.-+..++= .+..+++.+|.+.. ++.++++.+++ +...+
T Consensus 36 ~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~ 114 (184)
T PF02527_consen 36 LDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRE 114 (184)
T ss_dssp HHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT
T ss_pred HHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCC
Confidence 33333344444444 899999999999988876 47779999998865 57788888888 55567
Q ss_pred chhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 162 TFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+||+|++..+. ....+++-+.+.|++||.+++.-
T Consensus 115 ~fd~v~aRAv~---~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 115 SFDVVTARAVA---PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -EEEEEEESSS---SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CccEEEeehhc---CHHHHHHHHHHhcCCCCEEEEEc
Confidence 89999886443 24467788888999999988864
No 202
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.00 E-value=1.9e-06 Score=70.90 Aligned_cols=95 Identities=25% Similarity=0.286 Sum_probs=53.3
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------------CCcEEEecCCCC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------------PPLVIEGDFHRQ 156 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------------~~~~~~~d~~~~ 156 (257)
++....+.+++..+|||||.|......+-. +..+++||++.+. .+.+..+|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 333444678899999999999998877754 5545999999966 234456665543
Q ss_pred CCCC---CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEE
Q 025148 157 PFDD---ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 157 ~~~~---~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
++.+ ..-|+|++|....-++....+.++...||+|-+++-
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 3211 124677776443334445566777788888877654
No 203
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.99 E-value=1.3e-05 Score=69.18 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=67.0
Q ss_pred CeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHHHHHH
Q 025148 112 SKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFEFSNV 170 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~~~~ 170 (257)
.+||-||-|.|..++.+.+. +..+++.+|+++. .+.++..|..+. .-..++||+|++++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999997 4679999999976 234455555443 11223799999987
Q ss_pred hhccccH------HHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYP------DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~------~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.... .| .++.+.+++.|+++|+++...
T Consensus 158 tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCC-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 7663 34 688999999999999999984
No 204
>PRK00536 speE spermidine synthase; Provisional
Probab=97.97 E-value=8.7e-06 Score=69.39 Aligned_cols=82 Identities=11% Similarity=-0.010 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
....+||=||.|.|..++.+.+.+. +|+-||+++. ++.++. ... .-..++||+|+.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEc
Confidence 5678999999999999999999875 9999999976 122221 111 1123689999987
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+ .+.++.+.++|.|+|||+++.+.
T Consensus 147 s~----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CChHHHHHHHHhcCCCcEEEECC
Confidence 43 35678899999999999999975
No 205
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=1.9e-06 Score=65.84 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=50.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
-.|++++|+|||.|.+....+-.+...|+|+|++++ ++.+.++|+.++.+..+.||.++.|
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 367899999999999997776666679999999987 4567888888888778888886665
No 206
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.96 E-value=0.00012 Score=62.54 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=90.1
Q ss_pred CCCeEEEECCCCCHHHHHHHH-cC--CCcEEEecCCCC---------------C-CcEEEecCCCCC-CC--CCchhH-H
Q 025148 110 NESKALCIGARVGQEVEALKR-VG--VSDSVGIDLVPY---------------P-PLVIEGDFHRQP-FD--DETFDF-E 166 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~-~~--~~~v~gvD~s~~---------------~-~~~~~~d~~~~~-~~--~~~fD~-V 166 (257)
..-+||||.||.|....-... .+ ..+|.-.|.|+. . +.+.++|+.+.. +. +-..++ |
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 456999999999998766655 33 258899999976 2 377888877641 11 223577 4
Q ss_pred HHHHhhccccHH---HHHHHHHHhccCCcEEEEEe-ccCCC---------cCcCC-CC--CcCChhHHHHhcccCCcEEE
Q 025148 167 FSNVFDHALYPD---KFVMEIERTLKPGGVCVLHV-ALSKR---------ADKYS-AN--DLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 167 ~~~~l~h~~~~~---~~l~~~~r~LkpgG~l~i~~-~~~~~---------~~~y~-~~--~~~~~~~~~~~f~~~~~~~~ 230 (257)
+|..+|-++|-. +.++.+.+.+.|||+++.+- |.+.. ..... .. ..-+..++.+++..+||.++
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 667888888743 56889999999999999874 11111 00000 00 22378899999999999765
Q ss_pred EE-ecCCCCceEEE
Q 025148 231 RK-VDGFGLDTEVV 243 (257)
Q Consensus 231 ~~-~~gf~~~~~vv 243 (257)
.. ++.|++-|+.+
T Consensus 295 ~q~ID~~GIFTVSl 308 (311)
T PF12147_consen 295 DQRIDEWGIFTVSL 308 (311)
T ss_pred hheeccCCceEEEe
Confidence 54 46777655444
No 207
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.94 E-value=2e-05 Score=66.48 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~ 160 (257)
.....++....+++++.|||+|.|||.++..|.+.+. +|+++++++. ...++.+|+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 5566667777889999999999999999999999875 9999999976 457888998877655
Q ss_pred CchhHHHHH
Q 025148 161 ETFDFEFSN 169 (257)
Q Consensus 161 ~~fD~V~~~ 169 (257)
.||.+++|
T Consensus 123 -~fd~cVsN 130 (315)
T KOG0820|consen 123 -RFDGCVSN 130 (315)
T ss_pred -ccceeecc
Confidence 48887765
No 208
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.94 E-value=5.7e-06 Score=70.03 Aligned_cols=86 Identities=20% Similarity=0.147 Sum_probs=63.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC-C-C-----CCCchh
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-F-----DDETFD 164 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~-----~~~~fD 164 (257)
...+|||||++.|.-+.+++.. ..++++.+|.+++ .+.++.++..+. + + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 4579999999999999999873 3569999999976 466777776553 1 1 136899
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+||.+.-. .+....++.+.+.|+|||++++.
T Consensus 159 ~iFiDadK--~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 159 FIFVDADK--DNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEEecCCH--HHhHHHHHHHHHhcCCCeEEEEc
Confidence 99875221 12335677788999999998875
No 209
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.92 E-value=1.4e-05 Score=71.70 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=69.9
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC----CCCCCchhHHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ----PFDDETFDFEFSN 169 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~----~~~~~~fD~V~~~ 169 (257)
|++|||+=|=||.++...+..|..+|++||.|.. ...++++|+.++ .-...+||+|+.+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 8999999999999999999877779999999966 346777777654 2234589998764
Q ss_pred --Hhh--------ccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 --VFD--------HALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 --~l~--------h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+- -..+...++..+.++|+|||.++++++
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 322 123556788999999999999999885
No 210
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.92 E-value=0.00013 Score=63.93 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc--
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY-- 176 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~-- 176 (257)
-...+|+|.|.|..+..+... ..+|-++++... .+..+.+|...- .|.+ |+|+. -+++|+.|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDED 253 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChHH
Confidence 468999999999999998884 335667666533 245555565544 4444 58877 49999985
Q ss_pred HHHHHHHHHHhccCCcEEEEEec
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
-.+++++++..|+|||.+++...
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEec
Confidence 45899999999999999998754
No 211
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.89 E-value=2.4e-06 Score=69.18 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=61.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCC----CCCCCchhHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQ----PFDDETFDFEFSN 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~----~~~~~~fD~V~~~ 169 (257)
.+.++||+-||+|.++.....+|..+|+.||.++. ...++..|.... .....+||+|+.+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 57899999999999999999999889999999966 245566664322 1246789999887
Q ss_pred -HhhccccHHHHHHHHH--HhccCCcEEEEEec
Q 025148 170 -VFDHALYPDKFVMEIE--RTLKPGGVCVLHVA 199 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~--r~LkpgG~l~i~~~ 199 (257)
=+..-....++++.+. .+|+++|.++++..
T Consensus 122 PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 122 PPYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 1211111356777776 79999999999875
No 212
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=1.5e-05 Score=67.53 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCC-c
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDE-T 162 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~-~ 162 (257)
..++..+....+.+++.|||||+|.|.++..|++.+. +|+++++++. ++.++.+|+...++++- .
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 3445555555566789999999999999999999876 8999999865 57789999999988763 4
Q ss_pred hhHHHHH
Q 025148 163 FDFEFSN 169 (257)
Q Consensus 163 fD~V~~~ 169 (257)
++.|++|
T Consensus 96 ~~~vVaN 102 (259)
T COG0030 96 PYKVVAN 102 (259)
T ss_pred CCEEEEc
Confidence 6777766
No 213
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.84 E-value=1.1e-05 Score=66.14 Aligned_cols=84 Identities=23% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
..++.+|+|+-||-|.++..+++. ....|+++|++|. .+....+|..+... .+.+|-|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 577899999999999999999983 4458999999976 35678888887754 77899888764
Q ss_pred hhccccHHHHHHHHHHhccCCcEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~ 195 (257)
.++.. +++..+.+.+|+||++-
T Consensus 178 p~~~~---~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PESSL---EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSSGG---GGHHHHHHHEEEEEEEE
T ss_pred hHHHH---HHHHHHHHHhcCCcEEE
Confidence 33222 57788899999999864
No 214
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.84 E-value=5.5e-05 Score=60.52 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhccc-
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDHAL- 175 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~- 175 (257)
+.+.|+|+|+|.++...++.. .+|++++.+|. +++++.+|+.+..|+ .-|+|+|..++-..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe--~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE--NADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc--ccceeHHHHhhHHhh
Confidence 789999999999999888764 49999999977 568899999998884 46999997655433
Q ss_pred --cHHHHHHHHHHhccCCcEEEEE
Q 025148 176 --YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 176 --~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
....++..+..-||-+|.++=+
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccH
Confidence 2234667777788888887743
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.82 E-value=1.8e-05 Score=69.40 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=61.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH--------cCCCcEEEecCCCC-----------------CCcEEEecCCCCCCC--C
Q 025148 108 LSNESKALCIGARVGQEVEALKR--------VGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPFD--D 160 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~--------~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~~--~ 160 (257)
..++.+|+|-+||+|.++..+.+ ....+++|+|+++. ...+..+|....+.. .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 35667899999999999877765 25568999999866 123667776555433 4
Q ss_pred CchhHHHHH---Hhh-c----cc--------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 161 ETFDFEFSN---VFD-H----AL--------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 161 ~~fD~V~~~---~l~-h----~~--------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+.||+|++| ... + .. ....++..+.+.||+||.+.+.+|.
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 789999887 211 0 00 1124778999999999999998874
No 216
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.79 E-value=3.8e-05 Score=65.22 Aligned_cols=125 Identities=17% Similarity=0.094 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------------------------------C-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------------------------------P- 145 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------------------------------~- 145 (257)
+|.++||||||+-.....-+..-..+|+..|.++. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 46799999999855533223233347999998844 1
Q ss_pred CcEEEecCCCC-CCCC-----CchhHHHHH-Hhhccc----cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCC----C
Q 025148 146 PLVIEGDFHRQ-PFDD-----ETFDFEFSN-VFDHAL----YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSA----N 210 (257)
Q Consensus 146 ~~~~~~d~~~~-~~~~-----~~fD~V~~~-~l~h~~----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~----~ 210 (257)
-.++..|+... |+.. ..||+|++. +++-.. ...++++++.+.|||||.|++............. .
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~ 215 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPC 215 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE-
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccc
Confidence 13566777664 3332 259998663 555443 4567899999999999999998653322111111 1
Q ss_pred CcCChhHHHHhcccCCcEEEEEec
Q 025148 211 DLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 211 ~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
-..+.+.+++.++++|+.......
T Consensus 216 l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 216 LPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp --B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ccCCHHHHHHHHHHcCCEEEeccc
Confidence 223788899999999996555543
No 217
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.77 E-value=5.7e-05 Score=67.51 Aligned_cols=82 Identities=9% Similarity=-0.083 Sum_probs=52.1
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCC-----------C-----C
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF-----------D-----D 160 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~-----------~-----~ 160 (257)
.+|||+|||+|.++..+++.. .+|+|+|+++. ++.++.+|+.+.-- . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999888864 49999999976 34567777654210 0 0
Q ss_pred CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 161 ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..||+|+.+== ...-..++++.+ ++|+++++++.
T Consensus 278 ~~~d~v~lDPP-R~G~~~~~l~~l---~~~~~ivYvsC 311 (353)
T TIGR02143 278 YNCSTIFVDPP-RAGLDPDTCKLV---QAYERILYISC 311 (353)
T ss_pred CCCCEEEECCC-CCCCcHHHHHHH---HcCCcEEEEEc
Confidence 12576655400 000012344444 34788888886
No 218
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.76 E-value=6.6e-05 Score=67.34 Aligned_cols=82 Identities=11% Similarity=0.023 Sum_probs=54.1
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC-C-CC--------------
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ-P-FD-------------- 159 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~-~-~~-------------- 159 (257)
+.++||++||+|.++..+++.. .+|+|+|+++. ++.++.+|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 3579999999999999888754 48999999976 345677776542 1 10
Q ss_pred CCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 160 DETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 160 ~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+||+|+.+ --. .-..++++.+.+ |+++++++.
T Consensus 286 ~~~~D~v~lDPPR~--G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 286 SYNFSTIFVDPPRA--GLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred CCCCCEEEECCCCC--CCcHHHHHHHHc---cCCEEEEEe
Confidence 1247887665 100 112344454443 788888887
No 219
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.72 E-value=0.00034 Score=63.96 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCC--CeEEEECCCCCHHHHHHHHcCC--CcEEEecCCCC-CCcE-------EEecC
Q 025148 86 RDWDRKIQVFAKFFDDLKRKKLLSNE--SKALCIGARVGQEVEALKRVGV--SDSVGIDLVPY-PPLV-------IEGDF 153 (257)
Q Consensus 86 ~~w~~~~~~~~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~-~~~~-------~~~d~ 153 (257)
..|.++++.+-.++... +..+ ..|+|+.+|.|.++.+|.+.+. .+|+-++-... .+.+ .+.-.
T Consensus 344 ~~Wk~~V~~Y~~l~~~~-----i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWC 418 (506)
T PF03141_consen 344 KHWKKRVSHYKKLLGLA-----IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWC 418 (506)
T ss_pred HHHHHHHHHHHHhhccc-----ccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchh
Confidence 56777777765555421 2222 4799999999999999988652 12222211111 1111 11122
Q ss_pred CCCCCCCCchhHHHHH-Hhhccc---cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 154 HRQPFDDETFDFEFSN-VFDHAL---YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 154 ~~~~~~~~~fD~V~~~-~l~h~~---~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
+.++.-+.+||+|.++ +|.+.. +.+.++-|+.|+|+|||.++|..-. .-...+..+.+...+..
T Consensus 419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~------------~vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV------------DVLEKVKKIAKSLRWEV 486 (506)
T ss_pred hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH------------HHHHHHHHHHHhCcceE
Confidence 3345557899999885 555544 5677899999999999999996421 13566777777777654
Q ss_pred EEE
Q 025148 230 VRK 232 (257)
Q Consensus 230 ~~~ 232 (257)
...
T Consensus 487 ~~~ 489 (506)
T PF03141_consen 487 RIH 489 (506)
T ss_pred EEE
Confidence 443
No 220
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00033 Score=56.42 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=76.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------------CCcEEEecCCCCCCCCCchh
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------------PPLVIEGDFHRQPFDDETFD 164 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------------~~~~~~~d~~~~~~~~~~fD 164 (257)
++++.+|+|+=.|.|+++..++.. +.+.|+++-..+. +.+.+-.+...++ +.+..|
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d 124 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLD 124 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCccc
Confidence 588999999999999999999874 4457887754432 2333333333444 334466
Q ss_pred HHHHH--------HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCC---CCcCChhHHHHhcccCCcEEEE
Q 025148 165 FEFSN--------VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSA---NDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 165 ~V~~~--------~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~---~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++..+ -.-|-..-.++..++++.|||||++++..-........++ -...+...+.+.-...||+...
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeee
Confidence 65442 2223335667889999999999999987532221111111 1334666677777777765443
No 221
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00026 Score=57.35 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEec
Q 025148 87 DWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGD 152 (257)
Q Consensus 87 ~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d 152 (257)
.|..+....+..+-.=+....+++|++||=+|+.+|......++. +.+.++|++.|+. ++.-+.+|
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D 132 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED 132 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc
Confidence 344444443333322233455689999999999999999999995 6678999999987 34445555
Q ss_pred CCCCC-C--CCCchhHHHHHHhhccccHHH---HHHHHHHhccCCcEEEEEe
Q 025148 153 FHRQP-F--DDETFDFEFSNVFDHALYPDK---FVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 153 ~~~~~-~--~~~~fD~V~~~~l~h~~~~~~---~l~~~~r~LkpgG~l~i~~ 198 (257)
+.... + --+.+|+|+.++- +|.+ +..++..-||+||.+++.+
T Consensus 133 A~~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cCCcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 54321 0 1134666666543 3443 4578889999999888775
No 222
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.64 E-value=2.3e-05 Score=66.52 Aligned_cols=90 Identities=27% Similarity=0.375 Sum_probs=65.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCC-chhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDE-TFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~-~fD~V 166 (257)
.+..+||-||-|.|..+..+.+.+ ..+|+.+|+++. ++.++.+|.... .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 467899999999999999998864 568999999966 345667776543 11223 89999
Q ss_pred HHHHhhcc-----ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHA-----LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~-----~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.+..... ..-.++++.+++.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 87643311 234689999999999999999986
No 223
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.00016 Score=59.77 Aligned_cols=83 Identities=14% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhcc
Q 025148 111 ESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~ 174 (257)
+.+++|||+|.|.-+..++= .+..+|+-+|...+ ++.++++.+++..-....||+|.|..+.-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999998883 46668999998866 57788888887653222299998864432
Q ss_pred ccHHHHHHHHHHhccCCcEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i 196 (257)
.....+-+...+|+||.++.
T Consensus 147 --L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 147 --LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred --hHHHHHHHHHhcccCCcchh
Confidence 23556677789999998765
No 224
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.56 E-value=8.5e-05 Score=59.83 Aligned_cols=90 Identities=20% Similarity=0.195 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCC--CCCC-CchhHHHHH-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQ--PFDD-ETFDFEFSN- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~--~~~~-~~fD~V~~~- 169 (257)
.|.++||+=+|+|.++.....+|...++.||.+.. ...++..|.... .... +.||+|+.+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 57899999999999999999999889999999966 345566666532 1122 249999886
Q ss_pred Hhh-ccccHHHHHHH--HHHhccCCcEEEEEec
Q 025148 170 VFD-HALYPDKFVME--IERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~-h~~~~~~~l~~--~~r~LkpgG~l~i~~~ 199 (257)
-++ .+.+....+.. -..+|+|||.++++..
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 222 23333444444 4578999999999874
No 225
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00035 Score=59.05 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=82.1
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCCCC--CC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFD--DE 161 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~--~~ 161 (257)
.+...-+.+|.+|||-|.|+|.++.++++. +.++++..|+.+. ++.+...|+-...|. +.
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 333455689999999999999999999984 5679999998754 566777777665443 34
Q ss_pred chhHHHHHHhhccccHHHHHHHHHHhccCCcE-EEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 162 TFDFEFSNVFDHALYPDKFVMEIERTLKPGGV-CVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~-l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.+|.|+.+ ++.|..++-.+.++||.+|. ++.-.|.-+ ..+.-.+.+.++||..+..+.
T Consensus 177 ~aDaVFLD----lPaPw~AiPha~~~lk~~g~r~csFSPCIE-----------Qvqrtce~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 177 KADAVFLD----LPAPWEAIPHAAKILKDEGGRLCSFSPCIE-----------QVQRTCEALRSLGFIEIETVE 235 (314)
T ss_pred ccceEEEc----CCChhhhhhhhHHHhhhcCceEEeccHHHH-----------HHHHHHHHHHhCCCceEEEEE
Confidence 56665444 66799999999999999874 443344222 233444566677776666553
No 226
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00035 Score=58.07 Aligned_cols=88 Identities=23% Similarity=0.221 Sum_probs=64.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CC---cEEEecCCCCC---CCCCchhHHHHH-Hh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PP---LVIEGDFHRQP---FDDETFDFEFSN-VF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~---~~~~~d~~~~~---~~~~~fD~V~~~-~l 171 (257)
+..++..+||+|+-||.++..+.+.|...|+|+|.... .. .+...|+..+. +. +..|+++|+ ++
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSF 154 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSF 154 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeeh
Confidence 44678899999999999999999999889999999864 11 22334444442 22 257888775 33
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.. ...++..+..+++++|.++.-+
T Consensus 155 IS---L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 155 IS---LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred hh---HHHHHHHHHHhcCCCceEEEEe
Confidence 21 3368889999999999888765
No 227
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.50 E-value=0.00059 Score=59.98 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=63.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-----CCCcEEEecCCCC---------------CCc--EEEecCCCC----CC--C
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-----GVSDSVGIDLVPY---------------PPL--VIEGDFHRQ----PF--D 159 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~---------------~~~--~~~~d~~~~----~~--~ 159 (257)
+.++..++|+|||+|.-+..|.+. ....++++|+|.. .+. -+++|..+. +- .
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 356779999999999887765542 2357999999964 122 256666442 11 1
Q ss_pred CCchhHHHH--HHhhccccHH--HHHHHHHH-hccCCcEEEEEecc
Q 025148 160 DETFDFEFS--NVFDHALYPD--KFVMEIER-TLKPGGVCVLHVAL 200 (257)
Q Consensus 160 ~~~fD~V~~--~~l~h~~~~~--~~l~~~~r-~LkpgG~l~i~~~~ 200 (257)
.....+++. +++..+...+ .+++++.+ .|+|||.++|.+-.
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 223566655 3777766444 67899999 99999999998743
No 228
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.48 E-value=0.00031 Score=56.65 Aligned_cols=85 Identities=24% Similarity=0.383 Sum_probs=58.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
.-.|.+|||+|+|+|..+...+..|...|+..|+.+. .+.+...|... ++..||+++. +++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceec
Confidence 3568899999999999999998888889999998865 23333444333 5677999877 4333
Q ss_pred ccccHHHHHHHHHHhccCCcEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
.-..-.+.+. +.+.|+..|..++
T Consensus 154 ~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 154 NHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred CchHHHHHHH-HHHHHHhCCCEEE
Confidence 2223345666 6666666665554
No 229
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.46 E-value=0.00049 Score=53.23 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHh-hcCCCCCeEEEECCCCCHHHHHHHH-----cCCCcEEEecCCCC
Q 025148 92 IQVFAKFFDDLKRK-KLLSNESKALCIGARVGQEVEALKR-----VGVSDSVGIDLVPY 144 (257)
Q Consensus 92 ~~~~~~~~~~l~~~-~~~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~ 144 (257)
++.+..++..+... ....+...|+|+|||.|.++..++. ....+|+|+|.++.
T Consensus 6 i~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 6 IERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNES 64 (141)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcH
Confidence 34455555555444 3335677999999999999999998 56679999999976
No 230
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.43 E-value=0.00027 Score=66.48 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=27.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHcC---------CCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVG---------VSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~gvD~s~~ 144 (257)
.+.+|||.|||+|.++..+.+.. ..+++|+|+++.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~ 74 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKT 74 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHH
Confidence 45699999999999998876531 147899999866
No 231
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.43 E-value=0.0004 Score=59.87 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCCCCc-----------E----EEecCC--CC
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPYPPL-----------V----IEGDFH--RQ 156 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~-----------~----~~~d~~--~~ 156 (257)
...+.++......-...+|||+|||+|..+-.+.+. ...+++++|.|+.+.. . ...... ..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 344555443332234579999999999877666653 3458999999976110 0 001111 11
Q ss_pred CCCCCchhHHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEe
Q 025148 157 PFDDETFDFEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 157 ~~~~~~fD~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++. ..|+|++ ++|..+.+ ..++++.+.+.+.+ .|++..
T Consensus 99 ~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVE 139 (274)
T PF09243_consen 99 PFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVE 139 (274)
T ss_pred cCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEc
Confidence 222 2399877 79988886 22344555444444 666654
No 232
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.00039 Score=59.91 Aligned_cols=150 Identities=18% Similarity=0.257 Sum_probs=92.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhc----CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------
Q 025148 83 WTTRDWDRKIQVFAKFFDDLKRKKL----LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------- 144 (257)
Q Consensus 83 w~~~~w~~~~~~~~~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------- 144 (257)
|++..-.++...+..++..+..... -+..-+||--|||.|.++..++..|. .+-|-++|.-
T Consensus 119 wssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~ 197 (369)
T KOG2798|consen 119 WSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQ 197 (369)
T ss_pred hhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhcc
Confidence 6665555565556555555433221 13345899999999999999998765 5555565511
Q ss_pred -----------------------------------------CCcEEEecCCCCC---CCCCchhHHHHH-HhhccccHHH
Q 025148 145 -----------------------------------------PPLVIEGDFHRQP---FDDETFDFEFSN-VFDHALYPDK 179 (257)
Q Consensus 145 -----------------------------------------~~~~~~~d~~~~~---~~~~~fD~V~~~-~l~h~~~~~~ 179 (257)
......||+.+.- -..++||+|+.. .++-..+.-+
T Consensus 198 ~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Nile 277 (369)
T KOG2798|consen 198 ENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILE 277 (369)
T ss_pred CCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHH
Confidence 1122345554431 122469986443 4555556668
Q ss_pred HHHHHHHhccCCcEEEEEeccCCCcCc-CC-CC--C-cCChhHHHHhcccCCcEEEEEe
Q 025148 180 FVMEIERTLKPGGVCVLHVALSKRADK-YS-AN--D-LFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~~~~~~~~~~-y~-~~--~-~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
.+..|.++|||||+.+=.-|..-+... .. .+ . -++.+++.++.+..||..+++.
T Consensus 278 Yi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 278 YIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 899999999999998765553221111 00 01 1 1377888899999999877665
No 233
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.42 E-value=0.00027 Score=58.39 Aligned_cols=85 Identities=25% Similarity=0.311 Sum_probs=62.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCC------CCCCCchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQ------PFDDETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~------~~~~~~fD~ 165 (257)
..+++||||.=+|+-+...+.. ..++|+++|+++. .+.++++...+. ..+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 5689999999888888777764 4569999999976 355666655432 235678999
Q ss_pred HHHHHhhccc-cHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNVFDHAL-YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~l~h~~-~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|.+ |.. +......++.+.+|+||++++.
T Consensus 153 aFvD---adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVD---ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEc---cchHHHHHHHHHHHhhcccccEEEEe
Confidence 8664 111 2236778999999999999985
No 234
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.41 E-value=5.8e-05 Score=65.52 Aligned_cols=43 Identities=12% Similarity=-0.043 Sum_probs=34.8
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY 144 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~ 144 (257)
.+....+.+++.+||.+||.|..+..+++.. .++|+|+|.++.
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~ 55 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPD 55 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHH
Confidence 3333334678899999999999999999863 579999999976
No 235
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.36 E-value=4.4e-05 Score=65.96 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=63.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC-C--CCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ-P--FDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~-~--~~~~~fD~V~~ 168 (257)
..+.+|||+=|=+|.++...+..|..+|++||.|.. ...+++.|+.+. . -..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 357899999999999999988877678999999954 345677776542 1 12468999987
Q ss_pred H--Hhh-----ccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 169 N--VFD-----HALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 169 ~--~l~-----h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+ .+. -..+..+++..+.++|+|||.+++.++
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 5 221 112455778889999999999988775
No 236
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.33 E-value=0.00012 Score=65.74 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=64.0
Q ss_pred CeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHHHHhhc
Q 025148 112 SKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFSNVFDH 173 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~~l~h 173 (257)
-+|||+.||+|..+..++.. +..+|+++|+++. ++.+.++|....- ...+.||+|..+-+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPf-- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPF-- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCC--
Confidence 58999999999999999886 5568999999987 1345555555431 11356888866542
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+..++..+.+.+++||++.++.
T Consensus 124 -Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 -GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCcHHHHHHHHHhcccCCEEEEEe
Confidence 355689999999999999999984
No 237
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.25 E-value=0.00051 Score=60.63 Aligned_cols=89 Identities=19% Similarity=0.114 Sum_probs=72.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
...|.+|||+=||-|.++..++..+..+|+++|+||. .+..+++|.......-+.+|-|+++..
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 4669999999999999999999988767999999987 256788898888765577888877633
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
. ...+++....+.+|+||++....-
T Consensus 266 ~---~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 266 K---SAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred C---cchhhHHHHHHHhhcCcEEEEEec
Confidence 2 334688888899999999888754
No 238
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.16 E-value=0.0016 Score=55.51 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=63.1
Q ss_pred CeEEEECCCCC--HHHHHHHH--cCCCcEEEecCCCC-------------C--CcEEEecCCCCC--CC----CCchh--
Q 025148 112 SKALCIGARVG--QEVEALKR--VGVSDSVGIDLVPY-------------P--PLVIEGDFHRQP--FD----DETFD-- 164 (257)
Q Consensus 112 ~~vLDiGcG~G--~~~~~l~~--~~~~~v~gvD~s~~-------------~--~~~~~~d~~~~~--~~----~~~fD-- 164 (257)
...||||||-- ......++ .+.++|+-+|+++. . ..++++|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 47999999953 34555655 37789999999965 3 468899988642 11 12344
Q ss_pred ----HHHHHHhhccc---cHHHHHHHHHHhccCCcEEEEEeccCCCc--------Cc----CCCCCcCChhHHHHhcccC
Q 025148 165 ----FEFSNVFDHAL---YPDKFVMEIERTLKPGGVCVLHVALSKRA--------DK----YSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 165 ----~V~~~~l~h~~---~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--------~~----y~~~~~~~~~~~~~~f~~~ 225 (257)
+++..+++|+. +|..+++.+...|.||.+|+++....+.. .. -..-.+.+.+++..+|...
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~g~ 229 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFDGL 229 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCTTS
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcCCC
Confidence 33446999996 58889999999999999999986543210 00 1111344777777777744
No 239
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0014 Score=58.63 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=66.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC---CCcEEEecCCCC---------------CCcEEEecCCCCC---CCCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG---VSDSVGIDLVPY---------------PPLVIEGDFHRQP---FDDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~gvD~s~~---------------~~~~~~~d~~~~~---~~~~~fD~V 166 (257)
.++|.+|||+.++.|.=+..+++.. ...|+++|.++. ++.....|....+ ...++||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 4788999999999999998888852 235699999976 3456666665442 222359977
Q ss_pred HHH-------Hhhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 167 FSN-------VFDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 167 ~~~-------~l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+.+ ++.--+ -..+++....+.|||||.|+-+++.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 432 332111 1235788999999999999999874
No 240
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.08 E-value=0.0014 Score=63.84 Aligned_cols=91 Identities=12% Similarity=-0.103 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-------------------------------------------CCCcEEEecCCCC-
Q 025148 109 SNESKALCIGARVGQEVEALKRV-------------------------------------------GVSDSVGIDLVPY- 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~~~~v~gvD~s~~- 144 (257)
+++..++|-+||+|.++...+.. ...+++|+|+++.
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 56789999999999999776541 0126899999976
Q ss_pred ---------------CCcEEEecCCCCCCC--CCchhHHHHH--Hhhcccc---HHHHHH---HHHHhccCCcEEEEEec
Q 025148 145 ---------------PPLVIEGDFHRQPFD--DETFDFEFSN--VFDHALY---PDKFVM---EIERTLKPGGVCVLHVA 199 (257)
Q Consensus 145 ---------------~~~~~~~d~~~~~~~--~~~fD~V~~~--~l~h~~~---~~~~l~---~~~r~LkpgG~l~i~~~ 199 (257)
.+.+.++|+.+++.+ .++||+|++| ..+.+.+ ..++.+ +..+...+|+.+++.++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 256788898887544 3579999998 4333332 223333 33444448998888775
No 241
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.07 E-value=0.00081 Score=57.59 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=58.6
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCC---C
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDD---E 161 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~---~ 161 (257)
..+..+....+.++..|||||+|.|.++..|.+.+ .+++++|+++. ++.++.+|+..+...+ +
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~ 96 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKN 96 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSS
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcC
Confidence 34444444445678999999999999999999987 59999999855 5788999999887654 2
Q ss_pred chhHHHHHHhhccccHHHHHHHHHH
Q 025148 162 TFDFEFSNVFDHALYPDKFVMEIER 186 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~~~l~~~~r 186 (257)
.-..|++|.=.++ ....+.++..
T Consensus 97 ~~~~vv~NlPy~i--s~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNI--SSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTG--HHHHHHHHHH
T ss_pred CceEEEEEecccc--hHHHHHHHhh
Confidence 3344566511122 2345555555
No 242
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.99 E-value=0.0081 Score=51.62 Aligned_cols=128 Identities=19% Similarity=0.179 Sum_probs=63.8
Q ss_pred CCeEEEECCCCCHHHH-HHHHc--CCCcEEEecCCCC-----------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 111 ESKALCIGARVGQEVE-ALKRV--GVSDSVGIDLVPY-----------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~-~l~~~--~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
..+|+=||||+=-++. .+++. ....|+++|+++. .+.+..+|..+.+..-..||+|+-.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 3599999999866554 44443 3457999999976 4678888887776555679987654
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec--CCCCceEEEEEc
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD--GFGLDTEVVFRK 246 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~--gf~~~~~vv~~k 246 (257)
+-.--.+-++++..+.+.++||..+++-....-+..-|.. .++. .-.||....... +-..-+.++.||
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~---vd~~------~l~gf~~~~~~hP~~~ViNSvv~~rk 271 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPV---VDPE------DLRGFEVLAVVHPTDEVINSVVFARK 271 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-------TG------GGTTEEEEEEE---TT---EEEEE--
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCC---CChH------HCCCeEEEEEECCCCCceeEEEEEEe
Confidence 2222336778999999999999999997543221111211 1111 112777666665 333336666666
Q ss_pred c
Q 025148 247 N 247 (257)
Q Consensus 247 ~ 247 (257)
.
T Consensus 272 ~ 272 (276)
T PF03059_consen 272 K 272 (276)
T ss_dssp -
T ss_pred c
Confidence 4
No 243
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.97 E-value=4.7e-05 Score=55.76 Aligned_cols=83 Identities=24% Similarity=0.222 Sum_probs=34.1
Q ss_pred EEECCCCCHHHHHHHHc----CCCcEEEecCCC---C------------CCcEEEecCCCC--CCCCCchhHHHHHHhhc
Q 025148 115 LCIGARVGQEVEALKRV----GVSDSVGIDLVP---Y------------PPLVIEGDFHRQ--PFDDETFDFEFSNVFDH 173 (257)
Q Consensus 115 LDiGcG~G~~~~~l~~~----~~~~v~gvD~s~---~------------~~~~~~~d~~~~--~~~~~~fD~V~~~~l~h 173 (257)
||||+..|..+..+++. +..+++++|..+ . .+.++.++..+. .++++++|+++-+.-|-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999988887763 223799999988 2 234444444322 12234566665543332
Q ss_pred cccHHHHHHHHHHhccCCcEEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.......++.+.+.|+|||++++.
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 334456778888999999999885
No 244
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.90 E-value=0.002 Score=46.95 Aligned_cols=48 Identities=23% Similarity=0.168 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhcCC-CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 96 AKFFDDLKRKKLLS-NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 96 ~~~~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
+.++-.+....... +....+|||||+|.+...|.+.|. .-+|+|.-..
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~R 91 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARRR 91 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Cccccccccc
Confidence 45555555544433 456899999999999999999887 8899998654
No 245
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.0014 Score=54.25 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=63.0
Q ss_pred CCeEEEECCCCCHHHHHHHHc--C------C--CcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRV--G------V--SDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFS 168 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~--~------~--~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~ 168 (257)
-.+++|+.+..|.++..|.+. . . ..|++||+.+- .+..+++|+.... |..++-|+|+|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvc 121 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVC 121 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEe
Confidence 468999999999999998864 1 1 13999999876 4566788887652 55678899998
Q ss_pred H------HhhccccHH------HHHHHHHHhccCCcEEEEEe
Q 025148 169 N------VFDHALYPD------KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~------~l~h~~~~~------~~l~~~~r~LkpgG~l~i~~ 198 (257)
+ .+|.+.+.. .++.-...+|||||.++--+
T Consensus 122 DGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 122 DGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 5 344443221 24456678999999998654
No 246
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.69 E-value=0.0035 Score=53.57 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEE--------------ecC
Q 025148 88 WDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIE--------------GDF 153 (257)
Q Consensus 88 w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~--------------~d~ 153 (257)
|.-........-... .......+++|||+|||.|.........+...+...|.|.+-...+. .+.
T Consensus 95 wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~ 173 (282)
T KOG2920|consen 95 WECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKEN 173 (282)
T ss_pred eecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhc
Confidence 444444433333232 34556778999999999999998888777678888888866110000 000
Q ss_pred C-----------CCCC-CCC--chhHHHHH-HhhccccHHHH-HHHHHHhccCCcEEEEEe
Q 025148 154 H-----------RQPF-DDE--TFDFEFSN-VFDHALYPDKF-VMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 154 ~-----------~~~~-~~~--~fD~V~~~-~l~h~~~~~~~-l~~~~r~LkpgG~l~i~~ 198 (257)
. +.-+ ..+ .||+|.+. ++--....+.. .......++++|++++..
T Consensus 174 ~~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 174 HKVDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 0 0000 012 67887664 44434333333 455566778899887754
No 247
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.0096 Score=54.91 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=67.7
Q ss_pred CeEEEECCCCCHHHHHHHHc-----CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 112 SKALCIGARVGQEVEALKRV-----GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
..|+=+|+|.|-+.....+. ...++++++-+|. .+.++..|...++-+.++.|+++|..|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELL 448 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELL 448 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhh
Confidence 46788999999887654431 3458899999987 467889999999866688999999877
Q ss_pred hccccH---HHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYP---DKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~---~~~l~~~~r~LkpgG~l~i~ 197 (257)
.-+.|- .+.+..+-+.|||+|+.+=.
T Consensus 449 GSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 449 GSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred ccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 666543 37899999999999877643
No 248
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0044 Score=56.80 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=59.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCC---CCchhHHHHH-
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFD---DETFDFEFSN- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~---~~~fD~V~~~- 169 (257)
.+++++||+=||.|.++..+++.. .+|+|+|+++. ++.+..++.++.... ...+|.|+.+
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 567899999999999999999754 49999999977 466777777765322 2467777554
Q ss_pred ---HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 ---VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ---~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.++ .++++.+. .++|..++++++
T Consensus 371 PR~G~~-----~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 371 PRAGAD-----REVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred CCCCCC-----HHHHHHHH-hcCCCcEEEEeC
Confidence 221 24445444 467888888887
No 249
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.60 E-value=0.0041 Score=55.64 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=32.1
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCC
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHR 155 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~ 155 (257)
.++||+-||.|.++..+++... +|+|+|+++. ++.++.++..+
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 4899999999999999998654 9999999866 45677666544
No 250
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.56 E-value=0.0054 Score=51.15 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=64.7
Q ss_pred HhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-------------CCcEEEecCCCCC---CCCCchhH
Q 025148 104 RKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-------------PPLVIEGDFHRQP---FDDETFDF 165 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~ 165 (257)
....++++.+||-+|+++|.......+. +..-|++++.|+. ++.-+..|+.... +.-.-+|+
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEE
Confidence 4556799999999999999999998885 4568999999976 3444444544321 11135777
Q ss_pred HHHHHhhccccHHH---HHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDK---FVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~---~l~~~~r~LkpgG~l~i~~~ 199 (257)
||+++-+ |.+ +.-+...-||+||-+++++-
T Consensus 230 IFaDvaq----pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 230 IFADVAQ----PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred EeccCCC----chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 7776543 333 23567778999999999863
No 251
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.46 E-value=0.0009 Score=58.00 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=64.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCC--CCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQ--PFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~ 168 (257)
..++.+|||+.+|.|.-+..+++. +.+.+++.|+++. ++.....|.... ......||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 467889999999999999998885 3579999999976 334444454443 122234776633
Q ss_pred H-------Hhhccc----------------cHHHHHHHHHHhc----cCCcEEEEEecc
Q 025148 169 N-------VFDHAL----------------YPDKFVMEIERTL----KPGGVCVLHVAL 200 (257)
Q Consensus 169 ~-------~l~h~~----------------~~~~~l~~~~r~L----kpgG~l~i~~~~ 200 (257)
+ ++..-+ -..+.++.+.+.+ ||||+++-+++.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 2 222211 1235788999999 999999999874
No 252
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.41 E-value=0.0066 Score=50.05 Aligned_cols=105 Identities=14% Similarity=0.044 Sum_probs=65.4
Q ss_pred EEEECCCCCHHHHHHHHcCC-CcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHH-HHHHhhccc
Q 025148 114 ALCIGARVGQEVEALKRVGV-SDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFE-FSNVFDHAL 175 (257)
Q Consensus 114 vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V-~~~~l~h~~ 175 (257)
|.||||--|.+..+|.+.+. .+++++|+++. .+.+..+|..+.--+.+..|.| ++++=-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 68999999999999999864 36999999966 4677888865532122236874 5531000
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
--.+.+++....++....++++- .. ....+++++.+.||....+.
T Consensus 79 lI~~ILe~~~~~~~~~~~lILqP-~~------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQP-NT------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEEE-SS-------------HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEeC-CC------------ChHHHHHHHHHCCCEEEEeE
Confidence 02256666666666666777754 22 47789999999998766654
No 253
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.26 E-value=0.0071 Score=49.60 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=50.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-----CCCcEEEecCCC--------------CCCcEEEecCCCCCC----C----CCc
Q 025148 110 NESKALCIGARVGQEVEALKRV-----GVSDSVGIDLVP--------------YPPLVIEGDFHRQPF----D----DET 162 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~--------------~~~~~~~~d~~~~~~----~----~~~ 162 (257)
+.+.|+|+|.-.|.-+..+++. +.++|+|+|++. ..+.+++||..+... . ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4679999999999888777652 457999999942 156788888765421 1 112
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+|+-++-|.-.+..+.++.....+++|+++++..
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 224444444444455677788899999999999974
No 254
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.21 E-value=0.027 Score=49.95 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=36.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc----------C-------CCcEEEecCCCC-------------------CC---cE
Q 025148 108 LSNESKALCIGARVGQEVEALKRV----------G-------VSDSVGIDLVPY-------------------PP---LV 148 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~----------~-------~~~v~gvD~s~~-------------------~~---~~ 148 (257)
....-+|+|+||.+|..+..+.+. . ..+|+--|+-.. .. ..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344569999999999988765421 1 136677776544 11 22
Q ss_pred EEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 149 IEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 149 ~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
+-+.+.+--+|+++.|+++| .++|++.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred cCchhhhccCCCCceEEEEEechhhhcc
Confidence 33455555688899999888 4777653
No 255
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.14 E-value=0.15 Score=45.93 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=17.0
Q ss_pred CChhHHHHhcccCCcEEEEEecC
Q 025148 213 FSVKPLVKLFKRSEMVRVRKVDG 235 (257)
Q Consensus 213 ~~~~~~~~~f~~~~~~~~~~~~g 235 (257)
-+.+++....++.|.-.+....-
T Consensus 287 ps~eEv~~~Ie~~gsF~I~~le~ 309 (386)
T PLN02668 287 PSLQDFKEVVEANGSFAIDKLEV 309 (386)
T ss_pred CCHHHHHHHHhhcCCEEeeeeEE
Confidence 38888999988888666665543
No 256
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.01 E-value=0.0079 Score=53.14 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=61.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCCC----------------------CcEEEecCCCC-CCCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPYP----------------------PLVIEGDFHRQ-PFDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~----------------------~~~~~~d~~~~-~~~~~~fD 164 (257)
+.-.+||-+|.|.|.-++.+.+.+ ..+|+-+|++|+. +.++..|..++ .-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 455799999999999999999986 6799999999872 23333443332 11224677
Q ss_pred HHHHHHhhcc------ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHA------LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~------~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+.+..+-- ....++-.-+.|.|+++|.++++.
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 7654321110 023467788899999999999985
No 257
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.0023 Score=50.17 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=59.5
Q ss_pred CCCeEEEECCCCCHHHHHHHH--cCCCcEEEecCCCCCC-------------cEEEecCCC-------CCCCCCchhHHH
Q 025148 110 NESKALCIGARVGQEVEALKR--VGVSDSVGIDLVPYPP-------------LVIEGDFHR-------QPFDDETFDFEF 167 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~-------------~~~~~d~~~-------~~~~~~~fD~V~ 167 (257)
.|.+|||+|.|--.++..|.. .+...|.-.|-+++.+ ..-...... .....++||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 457899999996555544433 3556899999886611 000000011 112345899998
Q ss_pred H-HHhhccccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 168 S-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 168 ~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
| +.+-.-...+..++.|++.|+|.|..++..|..
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 8 555444556678899999999999988887744
No 258
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.025 Score=49.85 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=54.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC-------------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY-------------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...+|||+|.|.|.-+.++.+. + -.+++-++.|+. ...-+..|-..+|.. ..|++++.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhhh
Confidence 4467999999999887766553 2 124444555533 111222333334433 45888655
Q ss_pred -HHhhccccHH---HHHHHHHHhccCCcEEEEEec
Q 025148 169 -NVFDHALYPD---KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 169 -~~l~h~~~~~---~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+-+-|..... ..++.+...+.|||.++|..+
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 6554554332 367888899999999999864
No 259
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.73 E-value=0.011 Score=45.34 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=27.6
Q ss_pred eEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC
Q 025148 113 KALCIGARVGQEVEALKRVG-VSDSVGIDLVPY 144 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~ 144 (257)
.+||+|||.|..+..+++.+ ..+|+++|.++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~ 33 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD 33 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH
Confidence 48999999999999998864 348999999977
No 260
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.72 E-value=0.014 Score=49.31 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------------CCcEEE---ecCCCCCCCCCc-hhH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------------PPLVIE---GDFHRQPFDDET-FDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------------~~~~~~---~d~~~~~~~~~~-fD~ 165 (257)
...+||++|+|+|..+..++.....+|+-.|+... .+.+.. ++..+..+-... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 34579999999997777777766668888887644 011111 111111122233 899
Q ss_pred HHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCC
Q 025148 166 EFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 166 V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
|++ +++.+...++.++.-+...|..+|.+++.++..+
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 877 5888788888899999999999997777776443
No 261
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.53 E-value=0.031 Score=49.97 Aligned_cols=100 Identities=13% Similarity=-0.014 Sum_probs=69.4
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCC---------------------------------C-------cEEEe
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGV---------------------------------S-------DSVGI 139 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------~-------~v~gv 139 (257)
..++...--.++..++|-=||+|.++...+..+. . .++|+
T Consensus 181 aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~ 260 (381)
T COG0116 181 AAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS 260 (381)
T ss_pred HHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe
Confidence 3333333345667999999999999988776531 1 27799
Q ss_pred cCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH--HhhccccH-------HHHHHHHHHhccCCcEE
Q 025148 140 DLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--VFDHALYP-------DKFVMEIERTLKPGGVC 194 (257)
Q Consensus 140 D~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~~~~-------~~~l~~~~r~LkpgG~l 194 (257)
|+++. .+.+.++|+.+++-+-+.+|+|+|| .=+-+.+. .++.+.+++.++--+..
T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 99976 4688999999886443679999998 33333322 23445677777777788
Q ss_pred EEEec
Q 025148 195 VLHVA 199 (257)
Q Consensus 195 ~i~~~ 199 (257)
++++.
T Consensus 341 v~tt~ 345 (381)
T COG0116 341 VFTTS 345 (381)
T ss_pred EEEcc
Confidence 88763
No 262
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.42 E-value=0.039 Score=49.68 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC---CCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP---FDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~---~~~~~fD~V~~ 168 (257)
++|.+|||+.|.+|.=+.+++.. ..+.|++.|.+.. +..+...|....| ++. +||-|+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 78899999999999888777763 4568999998876 2344555555433 333 7885522
Q ss_pred -----H------------------HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 169 -----N------------------VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 169 -----~------------------~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
. +..+..-..+++......+++||+|+-+++.
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 1 1122223456788888999999999998863
No 263
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.018 Score=53.04 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhc-CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 96 AKFFDDLKRKKL-LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 96 ~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
++.+...+.+.. +..+..+||+-||||.++..+++ +..+|+||++++.
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPD 416 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChh
Confidence 455555555443 46678899999999999999988 4459999999987
No 264
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.22 E-value=0.013 Score=46.35 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=38.1
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC--CCCCc-hhHHHH
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP--FDDET-FDFEFS 168 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~--~~~~~-fD~V~~ 168 (257)
.|+|+.||.|..+..+++... +|+++|+++. ++.++++|..+.. +..+. +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 699999999999999999754 8999999976 5678888887652 22222 788764
No 265
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.91 E-value=0.052 Score=44.33 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=28.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
+.-.+.|||||-|.++..|+.. +..-+.|.+|-..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K 95 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK 95 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHH
Confidence 3457999999999999999885 7778899988633
No 266
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.81 E-value=0.048 Score=48.21 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=56.3
Q ss_pred hcCCCCCeEEEECCC-CCHHHHHHHH-cCCCcEEEecCCCC---------CCcEEEec-CCCCCCCCCchhHHHHHHhhc
Q 025148 106 KLLSNESKALCIGAR-VGQEVEALKR-VGVSDSVGIDLVPY---------PPLVIEGD-FHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG-~G~~~~~l~~-~~~~~v~gvD~s~~---------~~~~~~~d-~~~~~~~~~~fD~V~~~~l~h 173 (257)
...++|++|+=+|+| -|..+..+++ .+ .+|+++|.+++ ...++... ....+--.+.||+|+..+-.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~- 239 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGP- 239 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCCh-
Confidence 445889999999987 3466677777 46 79999999987 23334332 11111111237776553113
Q ss_pred cccHHHHHHHHHHhccCCcEEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
..+....+.||+||.+++.
T Consensus 240 -----~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 240 -----ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred -----hhHHHHHHHHhcCCEEEEE
Confidence 6788889999999999886
No 267
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.69 E-value=0.022 Score=49.69 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
+.+.....++++.++|.=||.|..+..+++. +.++|+|+|.++.
T Consensus 11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~ 55 (305)
T TIGR00006 11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQ 55 (305)
T ss_pred HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHH
Confidence 3333333467889999999999999999875 4579999999976
No 268
>PHA01634 hypothetical protein
Probab=94.67 E-value=0.043 Score=41.39 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+.+|+|||++-|.-+.+++-.|...|++++.++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~k 62 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEK 62 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHH
Confidence 57899999999999999999888889999999977
No 269
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.30 E-value=0.011 Score=43.39 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=26.1
Q ss_pred chhHHHH-HHhh--ccc----cHHHHHHHHHHhccCCcEEEEEe
Q 025148 162 TFDFEFS-NVFD--HAL----YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~-~~l~--h~~----~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.||+|+| ++.- |+. -...+++.+++.|+|||.++++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 3788877 4332 332 34568899999999999999985
No 270
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.91 E-value=0.86 Score=39.80 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=59.6
Q ss_pred CeEEEECCCCCHHHHHHHHcC---------------------CCcEEEecCCCC--------------------------
Q 025148 112 SKALCIGARVGQEVEALKRVG---------------------VSDSVGIDLVPY-------------------------- 144 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~---------------------~~~v~gvD~s~~-------------------------- 144 (257)
.+||.||-|.|.-...++..- ..+++.||+.+=
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 599999999987666654311 137899998722
Q ss_pred --------CCcEEEecCCCCCCCC-------CchhHHHH----H--HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 145 --------PPLVIEGDFHRQPFDD-------ETFDFEFS----N--VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 --------~~~~~~~d~~~~~~~~-------~~fD~V~~----~--~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.+.|+..+..++ .+.|+|.. | .-+.+....+++..+-..++||-.|+|..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 3467777877765432 24677622 2 33445566789999999999999888764
No 271
>PRK13699 putative methylase; Provisional
Probab=93.75 E-value=0.072 Score=44.64 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=17.6
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q 025148 178 DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.+++|+|||||.+++-.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 478899999999999888643
No 272
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.50 E-value=0.78 Score=38.02 Aligned_cols=106 Identities=15% Similarity=0.024 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHH-HHH-
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFE-FSN- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V-~~~- 169 (257)
+.+.++.||||-.+++..+|.+. ....+++.|+++. .+.+..+|....--.++.+|.| +++
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 44667999999999999999886 4567899999987 3455666664332234468874 553
Q ss_pred --HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 170 --VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 170 --~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
.+ -.+.+++-.+-|+.=-.++++ |+. ....+++++...+|....+
T Consensus 95 GG~l-----I~~ILee~~~~l~~~~rlILQ-Pn~------------~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 95 GGTL-----IREILEEGKEKLKGVERLILQ-PNI------------HTYELREWLSANSYEIKAE 141 (226)
T ss_pred cHHH-----HHHHHHHhhhhhcCcceEEEC-CCC------------CHHHHHHHHHhCCceeeee
Confidence 11 225666666666643356654 332 3667888888887754443
No 273
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.30 E-value=0.21 Score=45.01 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=57.2
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEecCCC-C-----CC-CCCchhHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGDFHR-Q-----PF-DDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d~~~-~-----~~-~~~~fD~V~ 167 (257)
..+.++.+||.+|||. |..+..+++. +..+++++|.+++.. .++...-.+ . .+ .+..+|+|+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 3457788999999987 7787777775 444699999876521 111111110 0 11 122466654
Q ss_pred HHH------------hhcc----ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNV------------FDHA----LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~------------l~h~----~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+ +.|. .++...+.++.+.|+++|.+++..
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 422 1122 345668899999999999998763
No 274
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.23 E-value=0.08 Score=46.07 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=22.1
Q ss_pred CCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC
Q 025148 111 ESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~ 144 (257)
.-++||||||...+.-.|.. ....+++|+|+++.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~ 137 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPK 137 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HH
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHH
Confidence 45899999999877655543 22349999999966
No 275
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=92.99 E-value=0.4 Score=44.86 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=75.4
Q ss_pred CCCChHHHHHHHhhhcCCccccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C----C
Q 025148 59 GYSSYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-G----V 133 (257)
Q Consensus 59 ~~~~y~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~----~ 133 (257)
..+..++|.-+..+..-+...-++++.+ ...+++..++. ..+..+|.|-.||+|.+.....+. + .
T Consensus 145 ~~G~~yE~ll~~fa~~~~k~~GEfyTP~-------~v~~liv~~l~---~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~ 214 (489)
T COG0286 145 LFGDAYEYLLRKFAEAEGKEAGEFYTPR-------EVSELIVELLD---PEPRNSIYDPACGSGGMLLQAAKYLKRHQDE 214 (489)
T ss_pred chhHHHHHHHHHHHHhcCCCCCccCChH-------HHHHHHHHHcC---CCCCCeecCCCCchhHHHHHHHHHHHhhccc
Confidence 4455556655544554444433443322 12233333221 245669999999999887766553 1 2
Q ss_pred CcEEEecCCCC------------CC----cEEEecCCCCCC-----CCCchhHHHHH---H-hhc-------cc------
Q 025148 134 SDSVGIDLVPY------------PP----LVIEGDFHRQPF-----DDETFDFEFSN---V-FDH-------AL------ 175 (257)
Q Consensus 134 ~~v~gvD~s~~------------~~----~~~~~d~~~~~~-----~~~~fD~V~~~---~-l~h-------~~------ 175 (257)
..++|.|+++. .+ ....+|-..-|. ..+.||+|++| . -.+ ..
T Consensus 215 ~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~ 294 (489)
T COG0286 215 IFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFF 294 (489)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccc
Confidence 57899998765 12 223333333332 23668887665 1 111 10
Q ss_pred ---------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 176 ---------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 176 ---------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
....+++.+...|+|||+..|.+|.
T Consensus 295 ~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 295 YGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred cCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 1146789999999999988887764
No 276
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=92.92 E-value=0.86 Score=43.27 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=33.4
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY 144 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~ 144 (257)
-.++.++..|||+||.+|.+....++. + ..-|+|+|+.|.
T Consensus 39 y~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 39 YKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred hccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 345688899999999999999988874 3 357899999876
No 277
>PRK10742 putative methyltransferase; Provisional
Probab=92.54 E-value=0.079 Score=44.78 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCCCC--eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 108 LSNES--KALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 108 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
++++. +|||.=+|.|..+..++..|. +|+++|-++.
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~ 121 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPV 121 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHH
Confidence 46666 899999999999999999875 6999999865
No 278
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=0.21 Score=38.82 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=43.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
++.++.+|+|+|.|.+....++.+....+|+++++- ...+...|+...++.|-.+-+|+-
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg 146 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG 146 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee
Confidence 455799999999999999999887668899999865 345566666665555433333433
No 279
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.41 E-value=1.2 Score=37.52 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=59.6
Q ss_pred CCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC--------------CCcEEEecCCCCCCC---CCchhHHHHHHh
Q 025148 110 NESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFD---DETFDFEFSNVF 171 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~---~~~fD~V~~~~l 171 (257)
.|.+||-+|=..-. +..++- ....+|+.+|+++. ++.....|+.+ |+| .++||+++++--
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeCCC
Confidence 57899999965432 233332 34459999999966 45667777765 333 378999988722
Q ss_pred hccccHHHHHHHHHHhccCCc-EEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 172 DHALYPDKFVMEIERTLKPGG-VCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG-~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
+-+.-..-++......||..| ..++.....+. ....-..+++.+.+.|+.....+.+|.
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-------s~~~~~~~Q~~l~~~gl~i~dii~~Fn 181 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-------SPDKWLEVQRFLLEMGLVITDIIPDFN 181 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---------HHHHHHHHHHHHTS--EEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-------cHHHHHHHHHHHHHCCcCHHHHHhhhc
Confidence 222333467777888888766 55555432110 000123577888888987666665554
No 280
>PRK11524 putative methyltransferase; Provisional
Probab=92.34 E-value=0.06 Score=46.62 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.6
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q 025148 178 DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.++.|+|||||.+++..
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEEc
Confidence 478899999999999999864
No 281
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.26 E-value=0.13 Score=43.53 Aligned_cols=116 Identities=11% Similarity=0.055 Sum_probs=60.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
+....+|+|||||---++...... +...++|+||+.. ...+...|...-+ +....|+.+. -++
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 455789999999988887765543 4569999999966 3345566666543 3456888655 344
Q ss_pred hccccHHH-HHHHHHHhccCCcEEEEEeccCCC---cCcCCCCCcCChhHHHHhcccCCcE
Q 025148 172 DHALYPDK-FVMEIERTLKPGGVCVLHVALSKR---ADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 172 ~h~~~~~~-~l~~~~r~LkpgG~l~i~~~~~~~---~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+-+...+. .--++...+. .=.++++.|...- ...+.. .....+..+....++.
T Consensus 182 p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~---~y~~~fe~~~~~~~~~ 238 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQ---TYSAWFEALAAERGWI 238 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHH---CHHHHHHHHCCTTCEE
T ss_pred HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCcccccc---CHHHHHHHhcccCCce
Confidence 43332221 1122233332 1267778774321 111111 0234566666677765
No 282
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.21 E-value=0.19 Score=48.78 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=46.6
Q ss_pred CchhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 161 ETFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
..+|+++.+.|.--.+| +++++++.|.++|||.+.-.+ +...+++-+.+.||. +....||
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------------~a~~vr~~l~~~GF~-v~~~~~~ 228 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT---------------SAGFVRRGLQEAGFT-VRKVKGF 228 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee---------------hHHHHHHHHHHcCCe-eeecCCC
Confidence 34777776655544444 478999999999999988544 466788889999995 4466788
Q ss_pred CCce
Q 025148 237 GLDT 240 (257)
Q Consensus 237 ~~~~ 240 (257)
+-.+
T Consensus 229 g~kr 232 (662)
T PRK01747 229 GRKR 232 (662)
T ss_pred chhh
Confidence 7543
No 283
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.78 E-value=0.26 Score=43.84 Aligned_cols=94 Identities=20% Similarity=0.119 Sum_probs=60.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc---C--CCcEEEecCCCC---------------CCcEEEecCCCC---------CC
Q 025148 108 LSNESKALCIGARVGQEVEALKRV---G--VSDSVGIDLVPY---------------PPLVIEGDFHRQ---------PF 158 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~gvD~s~~---------------~~~~~~~d~~~~---------~~ 158 (257)
++++++|||+.+.+|.=+..|.+. . .+.|++-|.+.. ...+...++... +.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 489999999999999988777763 1 237899898865 112222222222 12
Q ss_pred CCCchhHHHHH-------HhhccccH-----------------HHHHHHHHHhccCCcEEEEEeccC
Q 025148 159 DDETFDFEFSN-------VFDHALYP-----------------DKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 159 ~~~~fD~V~~~-------~l~h~~~~-----------------~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
.-..||-|+|+ ++.+..+. .+.+..-.+.||+||.++-+++..
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 23457766543 33333221 245677889999999999998743
No 284
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.74 E-value=0.088 Score=45.42 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=62.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC--CCCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ--PFDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~--~~~~~~fD~ 165 (257)
+.+.+++|-||-|.|...+....+ ...++.-+|++.. .+....+|...+ ....++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 356689999999999998877765 2346777777644 345555555433 344678999
Q ss_pred HHHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+.+.-+-+. ..+..++.+.+.||+||+++...
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 8664222221 23356788999999999999874
No 285
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.49 E-value=0.53 Score=40.10 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=58.1
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHHHHHHhhcccc
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFEFSNVFDHALY 176 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~ 176 (257)
+..+.+|+...|+|+-+|.++-.|.+++- .|++||.-+- .+.....|...........|-.+|+..| .
T Consensus 206 ~~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE---k 281 (358)
T COG2933 206 DKRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE---K 281 (358)
T ss_pred hhhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhc---C
Confidence 34467899999999999999999998765 9999997654 3455555655553334567777776443 4
Q ss_pred HHHHHHHHHHhccCC
Q 025148 177 PDKFVMEIERTLKPG 191 (257)
Q Consensus 177 ~~~~l~~~~r~Lkpg 191 (257)
|.++-+-|..+|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 666666666666543
No 286
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=91.38 E-value=0.41 Score=42.27 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=68.7
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------------CCcEEEecCCCCCCC-
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------------PPLVIEGDFHRQPFD- 159 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------------~~~~~~~d~~~~~~~- 159 (257)
....++|+.|.|-=.|||.+....+..|. -|+|.||+-. ...+..+|..+.++-
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 44568999999999999999988888775 9999999844 234566676666543
Q ss_pred CCchhHHHHH----Hh---------------------hcccc---------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 160 DETFDFEFSN----VF---------------------DHALY---------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 160 ~~~fD~V~~~----~l---------------------~h~~~---------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+..||.|+|+ += .|++. ....+.-..+.|.-||++++..|.
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 4578988875 21 13321 123567788999999999999874
No 287
>PTZ00357 methyltransferase; Provisional
Probab=91.32 E-value=0.48 Score=45.63 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=60.1
Q ss_pred eEEEECCCCCHHHHHHHHc----C-CCcEEEecCCCC----------------C--------CcEEEecCCCCCCCC---
Q 025148 113 KALCIGARVGQEVEALKRV----G-VSDSVGIDLVPY----------------P--------PLVIEGDFHRQPFDD--- 160 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~----------------~--------~~~~~~d~~~~~~~~--- 160 (257)
.|+=+|+|.|-+.....+. + ..+|++|+-|+. + +.++..|+.++..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999987665432 2 358999999954 1 577888988875332
Q ss_pred --------CchhHHHHHHhhccccHH---HHHHHHHHhccC----CcE
Q 025148 161 --------ETFDFEFSNVFDHALYPD---KFVMEIERTLKP----GGV 193 (257)
Q Consensus 161 --------~~fD~V~~~~l~h~~~~~---~~l~~~~r~Lkp----gG~ 193 (257)
+++|+|+|..|--+.|-+ +.|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999998777666543 688888888887 786
No 288
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.13 E-value=0.73 Score=40.12 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=52.7
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC--------cEEEecCCCC------CCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP--------LVIEGDFHRQ------PFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~--------~~~~~d~~~~------~~~~~~fD~V~~~ 169 (257)
...+.++.+||..|||. |..+..+++....+|++++.++... ..+..+-... ....+.+|+|+..
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~ 239 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDF 239 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEEC
Confidence 33467788999988763 6666677775445899998876521 1111111100 0122345554432
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+- ....++++.+.|+++|.++...
T Consensus 240 ~g-----~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 240 VG-----TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CC-----CHHHHHHHHHHhhcCCEEEEEC
Confidence 11 1357888999999999988753
No 289
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.98 E-value=0.087 Score=44.17 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=38.1
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------------CCcEEEecCCC-CCCCCCchhHH
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------------PPLVIEGDFHR-QPFDDETFDFE 166 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------------~~~~~~~d~~~-~~~~~~~fD~V 166 (257)
.+|||.=||-|..+..++..| ++|++++-|+. .+.++.+|..+ +..++++||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 389999999999999999876 49999999965 35677787766 35567899998
Q ss_pred HHH-Hhh
Q 025148 167 FSN-VFD 172 (257)
Q Consensus 167 ~~~-~l~ 172 (257)
+.+ .+.
T Consensus 156 Y~DPMFp 162 (234)
T PF04445_consen 156 YFDPMFP 162 (234)
T ss_dssp EE--S--
T ss_pred EECCCCC
Confidence 765 443
No 290
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.85 E-value=0.37 Score=45.22 Aligned_cols=90 Identities=23% Similarity=0.251 Sum_probs=54.7
Q ss_pred CCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCC-------------C--------C
Q 025148 109 SNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQ-------------P--------F 158 (257)
Q Consensus 109 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~-------------~--------~ 158 (257)
.++.+|+=+|||. |..+...++.-+++|+++|.+++ ...+...+..+. + +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 4688999999998 66666666653348999999976 223222222110 0 0
Q ss_pred CC--CchhHHHHHHhh-ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 159 DD--ETFDFEFSNVFD-HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 159 ~~--~~fD~V~~~~l~-h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+ +.+|+|+..+.. .-..|.-+.+++.+.+||||+++...
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00 246776554322 11234333599999999999977653
No 291
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.93 E-value=0.87 Score=38.93 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc------CCCcEEEecCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRV------GVSDSVGIDLVPY 144 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~ 144 (257)
++..+...+++.+...++|+|||.|.++.++++. ....++.||-...
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 4445555777788889999999999999999873 2457889998643
No 292
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=89.49 E-value=2 Score=34.18 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=65.1
Q ss_pred EECCCCCHHHHHHHHc-C-CCcEEEecCCCC--------------------CC-cEEEecCCCCC----CCCCchhHHHH
Q 025148 116 CIGARVGQEVEALKRV-G-VSDSVGIDLVPY--------------------PP-LVIEGDFHRQP----FDDETFDFEFS 168 (257)
Q Consensus 116 DiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~--------------------~~-~~~~~d~~~~~----~~~~~fD~V~~ 168 (257)
=||=|.-.++..|++. + ..++++.-.... .+ .....|+..+. ...+.||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 3566666667777764 4 557777655533 11 12233444442 35678998876
Q ss_pred H--Hhh--------cc----ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 169 N--VFD--------HA----LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 169 ~--~l~--------h~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
| ... .+ .-...+++.+.++|+++|.+.|+...... | +.-.+..+-.+.|+......
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---y------~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---Y------DSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---C------ccccHHHHHHhcCCEEEEEe
Confidence 5 111 01 11235778999999999999999865542 2 33356677777887655543
No 293
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.36 E-value=0.51 Score=38.65 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..++..++.. .-.+|+.|||.=||+|..+.+..+.+. +.+|+|+++.
T Consensus 178 ~~l~~~lI~~-~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~ 224 (231)
T PF01555_consen 178 VELIERLIKA-STNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEE 224 (231)
T ss_dssp HHHHHHHHHH-HS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHH
T ss_pred HHHHHHHHHh-hhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHH
Confidence 4455555533 347799999999999999999888776 8999999864
No 294
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=89.24 E-value=0.23 Score=42.86 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=42.1
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCC--CCchhHHHH
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFD--DETFDFEFS 168 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~--~~~fD~V~~ 168 (257)
+++|+-||.|.....+.+.|...+.++|+++. ......+|+.++... ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEe
Confidence 68999999999999998888767889999976 223567777776532 246898743
No 295
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=89.16 E-value=0.32 Score=36.70 Aligned_cols=68 Identities=26% Similarity=0.429 Sum_probs=44.1
Q ss_pred CchhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 161 ETFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
..||+|+-+.+.--.+| .++++++.+.++|||.+.-.+ ....+++-+.+.||. +....||
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys---------------~a~~Vr~~L~~aGF~-v~~~~g~ 112 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS---------------SAGAVRRALQQAGFE-VEKVPGF 112 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-----------------BHHHHHHHHHCTEE-EEEEE-S
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------chHHHHHHHHHcCCE-EEEcCCC
Confidence 34555544433333333 478999999999999876533 356788999999997 5677799
Q ss_pred CCceEEEE
Q 025148 237 GLDTEVVF 244 (257)
Q Consensus 237 ~~~~~vv~ 244 (257)
+-.++++.
T Consensus 113 g~Kr~~~~ 120 (124)
T PF05430_consen 113 GRKREMLR 120 (124)
T ss_dssp TTSSEEEE
T ss_pred CCcchheE
Confidence 86655544
No 296
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.00 E-value=0.84 Score=40.75 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=53.4
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEEEe----cCCCCCCC-----------C-CchhHHHHH
Q 025148 108 LSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVIEG----DFHRQPFD-----------D-ETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~~~----d~~~~~~~-----------~-~~fD~V~~~ 169 (257)
...+++|+=+|||+ |.++..+++. |..+|+.+|.+++....... +....+-. . ..+|+++-
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie- 244 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIE- 244 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEE-
Confidence 34555999999998 7777777774 77899999999873221111 10011101 0 13554322
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
... ...++..+.+.+++||.+++.-
T Consensus 245 ---~~G-~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 245 ---AVG-SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred ---CCC-CHHHHHHHHHHhcCCCEEEEEe
Confidence 122 2358899999999999988753
No 297
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.73 E-value=0.44 Score=42.08 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEe---cCCCCCCCCCchhHHHHHHhhc
Q 025148 108 LSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEG---DFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~---d~~~~~~~~~~fD~V~~~~l~h 173 (257)
..++++||=+|||. |..+..+++. +..+|+++|.+++.. .++.. +..+.....+.+|+|+..
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~---- 242 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEV---- 242 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEEC----
Confidence 34688999999864 4455555554 544789999886621 11111 111111011235655432
Q ss_pred cccHHHHHHHHHHhccCCcEEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
...+ ..++...+.|++||.+++.
T Consensus 243 ~G~~-~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 243 SGHP-SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCCH-HHHHHHHHHhhcCCEEEEE
Confidence 2222 4677888999999998875
No 298
>PRK11524 putative methyltransferase; Provisional
Probab=88.66 E-value=0.77 Score=39.75 Aligned_cols=47 Identities=13% Similarity=-0.013 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..++..++ +..-.+|+.|||-=||+|..+.+..+.+. +.+|+|++++
T Consensus 195 ~~L~erlI-~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~ 241 (284)
T PRK11524 195 EALLKRII-LASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSE 241 (284)
T ss_pred HHHHHHHH-HHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHH
Confidence 34444444 33347899999999999999999888775 9999999875
No 299
>KOG2730 consensus Methylase [General function prediction only]
Probab=88.57 E-value=0.49 Score=39.25 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=43.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHHHHhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~l~ 172 (257)
....|+|.-||.|..+...+..+ ..|++||+++..+.....+++-...++ ..++|..+++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~-~~VisIdiDPikIa~AkhNaeiYGI~~-rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG-PYVIAIDIDPVKIACARHNAEVYGVPD-RITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC-CeEEEEeccHHHHHHHhccceeecCCc-eeEEEechHHH
Confidence 45689999999988888777765 489999999886655555655555555 56666555553
No 300
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.30 E-value=1.6 Score=38.42 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=53.3
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHH-cCCCcEEEecCCCCCCcE--------EEecCCCC-----------CCCCCchh
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKR-VGVSDSVGIDLVPYPPLV--------IEGDFHRQ-----------PFDDETFD 164 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~--------~~~d~~~~-----------~~~~~~fD 164 (257)
.-.+.|.+||-+|+|+ |..+...++ .|..+|+.+|+++.+.+. +.-+.... -+.+..+|
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 3458899999999998 666655566 488899999999873211 11111100 01112244
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.+..+ -.+..++.....+|.||.+++..
T Consensus 245 ~~~dCs-----G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 245 VTFDCS-----GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred eEEEcc-----CchHHHHHHHHHhccCCEEEEec
Confidence 432210 12356777788999999977764
No 301
>PRK13699 putative methylase; Provisional
Probab=88.10 E-value=0.92 Score=37.96 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++..++ +..-.+|+.|||-=||+|..+....+.+. +.+|+|++++
T Consensus 151 ~l~~~~i-~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~ 196 (227)
T PRK13699 151 TSLQPLI-ESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQ 196 (227)
T ss_pred HHHHHHH-HHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHH
Confidence 4444444 33346889999999999999999888765 9999999864
No 302
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=85.28 E-value=0.17 Score=38.95 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.0
Q ss_pred HHHHHHHHhccCCcEEEEEec
Q 025148 179 KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+++.+.+.|+|||.+++.+.
T Consensus 73 ~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 73 KALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp HHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHhhccCCEEEEEEe
Confidence 678899999999999998863
No 303
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=85.11 E-value=5.2 Score=34.92 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY 144 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~ 144 (257)
+++.+.....++++..+|.=-|.|..+..+.+.. .++++|+|-++.
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~ 59 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQ 59 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHH
Confidence 3444444455778999999999999999988862 467999999865
No 304
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.73 E-value=1.2 Score=37.23 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=25.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~ 144 (257)
.++-++||||.|...+.-.+--+ |+ +.+|.|+++.
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~ 113 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQ 113 (292)
T ss_pred cCceEEEeeccCcccccccccceeecc-eeecCccCHH
Confidence 45678999999977665555432 55 8999999865
No 305
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=84.39 E-value=1 Score=41.21 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=27.3
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.|||||+|||.++....+.|.-.|++++.-..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkP 100 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKP 100 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhch
Confidence 68999999999999988887668999986543
No 306
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=84.26 E-value=1.2 Score=39.98 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=29.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.-..++|+|+|.|.++..++-..+..|.|||-|..
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~ 187 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQR 187 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchH
Confidence 34689999999999999998765569999999843
No 307
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.15 E-value=3.2 Score=34.51 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=51.3
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCC-------CCCchhHHHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPF-------DDETFDFEFSNV 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~-------~~~~fD~V~~~~ 170 (257)
..+.++.+||..|+|+ |..+..+++....+|++++.++..... ...+..+... ..+.+|+++..+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 3347789999999986 555555665434699999887542110 0011111111 123466654321
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.. ...+..+.+.|+++|.++...
T Consensus 210 ----~~-~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 210 ----GG-PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ----CC-HHHHHHHHHhcccCCEEEEEc
Confidence 11 145677888999999988754
No 308
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.69 E-value=5.6 Score=32.46 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=57.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc----C-CCcEEEecCCCC----------CCcEEEecCCCCCC-------CCCchhH-
Q 025148 109 SNESKALCIGARVGQEVEALKRV----G-VSDSVGIDLVPY----------PPLVIEGDFHRQPF-------DDETFDF- 165 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~----------~~~~~~~d~~~~~~-------~~~~fD~- 165 (257)
.+.+.|+|+|.-.|.-+.+.+.. | ..+|+++|++-. .+.+++++..+... .++.--+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 35679999999998887777653 3 258999999854 34566665554321 1111111
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+-++-||....-..++-+.++|.-|-++++...
T Consensus 148 vilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 148 VILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred EEecCCchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 2224445555455667777889999999998753
No 309
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=83.43 E-value=1 Score=39.25 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=47.8
Q ss_pred CCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEEEe----cCCCCCCCCCchhHHHHHHhhccccHHHHHH
Q 025148 109 SNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVIEG----DFHRQPFDDETFDFEFSNVFDHALYPDKFVM 182 (257)
Q Consensus 109 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~~~----d~~~~~~~~~~fD~V~~~~l~h~~~~~~~l~ 182 (257)
.+++++|=+|||. |.++..+++. |...|+++|.++........ |..+. ....+|+|+-.+- . ...++
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G----~-~~~~~ 215 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASG----D-PSLID 215 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCC----C-HHHHH
Confidence 3577899999865 5566666664 54347778877552211111 11110 1234776654321 1 24567
Q ss_pred HHHHhccCCcEEEEE
Q 025148 183 EIERTLKPGGVCVLH 197 (257)
Q Consensus 183 ~~~r~LkpgG~l~i~ 197 (257)
.+.+.|++||.+++.
T Consensus 216 ~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 216 TLVRRLAKGGEIVLA 230 (308)
T ss_pred HHHHhhhcCcEEEEE
Confidence 888999999998865
No 310
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=82.96 E-value=0.9 Score=40.19 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=49.8
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHH--cCCCcEEEecCCCCCCcEEE-ecCC-CC-CCCC-CchhHHHHHHhhcccc--HH
Q 025148 108 LSNESKALCIGARV-GQEVEALKR--VGVSDSVGIDLVPYPPLVIE-GDFH-RQ-PFDD-ETFDFEFSNVFDHALY--PD 178 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~--~~~~~v~gvD~s~~~~~~~~-~d~~-~~-~~~~-~~fD~V~~~~l~h~~~--~~ 178 (257)
.+++++||=+|||. |..+..+++ .+..+|+++|.++....... .+.. .. ...+ ..+|+|+-. ... -.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~----~G~~~~~ 236 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFEC----VGGRGSQ 236 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEEC----CCCCccH
Confidence 46789999999865 444444444 24568999998876322211 0100 00 1111 135655432 211 23
Q ss_pred HHHHHHHHhccCCcEEEEE
Q 025148 179 KFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~ 197 (257)
..+.+..+.|++||.+++.
T Consensus 237 ~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHHHHHhCcCCcEEEEE
Confidence 5788889999999998864
No 311
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.95 E-value=1 Score=40.46 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------------CCcEEEe
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------------PPLVIEG 151 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------------~~~~~~~ 151 (257)
+.+...+.+..+.+++...|+|.|-|......+.. +...-+|+++... .+..+++
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 34444455666788999999999999999988875 4456789988866 1233333
Q ss_pred cCCCCCCC---CCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 152 DFHRQPFD---DETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 152 d~~~~~~~---~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++.+...- ....++|+.|-+-.-++...-+.++..-+++|-+++=.-|
T Consensus 259 sf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 259 SFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred ccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence 33321110 0112233333222222222334688888999888776543
No 312
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=81.69 E-value=8 Score=30.14 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=45.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------CCcEEEecCCCC-CCCCCchhHH-HHHHhhccc--
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------PPLVIEGDFHRQ-PFDDETFDFE-FSNVFDHAL-- 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------~~~~~~~d~~~~-~~~~~~fD~V-~~~~l~h~~-- 175 (257)
.-.+-|||+|=|+|..-..|.+. +..+|+.+|-.-. .-.++.+|+.+. +. -..+ ...++-|..
T Consensus 27 ~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~----~~~~g~~a~laHaD~G 102 (160)
T PF12692_consen 27 GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPA----LARFGAGAALAHADIG 102 (160)
T ss_dssp T--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHH----HHHH-S-EEEEEE---
T ss_pred CCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHH----HHhcCCceEEEEeecC
Confidence 34478999999999999999985 7779999996522 234555555432 10 0000 001333432
Q ss_pred --cHHH------HH-HHHHHhccCCcEEEEEec
Q 025148 176 --YPDK------FV-MEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 176 --~~~~------~l-~~~~r~LkpgG~l~i~~~ 199 (257)
++++ .+ .-+..+|.|||+++-..|
T Consensus 103 ~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 103 TGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp -S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred CCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 2221 12 346678999999887554
No 313
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=81.12 E-value=0.99 Score=42.37 Aligned_cols=87 Identities=23% Similarity=0.241 Sum_probs=52.1
Q ss_pred CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCC-------------C--------CC
Q 025148 110 NESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQ-------------P--------FD 159 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~-------------~--------~~ 159 (257)
++.+++=+|||. |..+..++..-.++|+++|.++. ...++..+..+- + ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 467999999987 45555555543357999998865 222322232110 0 11
Q ss_pred --CCchhHHHHHH-hhccccHHHHHHHHHHhccCCcEEEE
Q 025148 160 --DETFDFEFSNV-FDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 160 --~~~fD~V~~~~-l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
-..+|+|+..+ +..-..|.-..+++.+.+|||++++-
T Consensus 243 e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 13467766543 33334554466889999999998763
No 314
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=80.85 E-value=0.57 Score=41.04 Aligned_cols=38 Identities=16% Similarity=-0.003 Sum_probs=27.3
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
..++++..+|.=-|.|..+..+.+. +.++++|+|.++.
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~ 55 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPE 55 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HH
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHH
Confidence 3577889999888999999888874 5589999999876
No 315
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.82 E-value=1.5 Score=38.84 Aligned_cols=83 Identities=22% Similarity=0.242 Sum_probs=48.1
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCC---CC--------CCcEEEecCCCCCC----CCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLV---PY--------PPLVIEGDFHRQPF----DDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s---~~--------~~~~~~~d~~~~~~----~~~~fD~V~~~~l 171 (257)
..++.+||-+|||. |.++..+++....+|++++.+ +. ....+ +..+.+. ..+.+|+|+-.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~- 246 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT- 246 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc-
Confidence 35788999999865 555666666534489999863 32 11211 1111110 112356554422
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
..+ ..+.+..+.|++||.+++.
T Consensus 247 ---g~~-~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 247 ---GVP-PLAFEALPALAPNGVVILF 268 (355)
T ss_pred ---CCH-HHHHHHHHHccCCcEEEEE
Confidence 112 3678888999999998764
No 316
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=80.72 E-value=4.3 Score=36.01 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=49.1
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCC--------CCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQP--------FDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V~ 167 (257)
...++++++||=.|||. |..+..+++. |..+|+++|.++....+ ...+..+.. .....+|+|+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 34457889999999754 4455555664 44359999987652111 001111110 0112244443
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
- ....+ ..+++..+.+++||.+++.
T Consensus 251 d----~~g~~-~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 251 D----AVGRP-ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred E----CCCCH-HHHHHHHHHhccCCEEEEE
Confidence 2 22222 4677788999999998864
No 317
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=80.56 E-value=3.8 Score=30.95 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCeEEEECCCCCHH-HHHHHHcCCCcEEEecCCCC----CCcEEEecCCC
Q 025148 110 NESKALCIGARVGQE-VEALKRVGVSDSVGIDLVPY----PPLVIEGDFHR 155 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~-~~~l~~~~~~~v~gvD~s~~----~~~~~~~d~~~ 155 (257)
..++|+|||-|.=.- +..|.+.| .+|+++|+++. .+.++.-|+.+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~~a~~g~~~v~DDif~ 62 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPRKAPEGVNFVVDDIFN 62 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S----STTEE---SSS
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC-CcEEEEECcccccccCcceeeecccC
Confidence 345999999997544 55666667 59999999988 66777777765
No 318
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=80.52 E-value=4.4 Score=35.61 Aligned_cols=84 Identities=12% Similarity=-0.020 Sum_probs=49.1
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
..++++.+||=.|+|. |..+..+++....+|+++|.+++.... ...+..+ ...+.+|+++- ...
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~--~~~~~~d~~i~~~~~----- 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYD--TPPEPLDAAILFAPA----- 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccc--cCcccceEEEECCCc-----
Confidence 4467889999999753 444455555434589999888652110 0011111 11234675322 211
Q ss_pred HHHHHHHHHHhccCCcEEEEE
Q 025148 177 PDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ..+....+.|++||.+++.
T Consensus 234 ~-~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 234 G-GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred H-HHHHHHHHhhCCCcEEEEE
Confidence 2 4678888999999998774
No 319
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=80.51 E-value=3.9 Score=34.86 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=52.1
Q ss_pred HHHHHHHHHHH-hhcCCCCCeEEEECCCCCH----HHHHHHHc-C-CCcEEEecCCCC---CCcEEEecCCCCCCCCCch
Q 025148 94 VFAKFFDDLKR-KKLLSNESKALCIGARVGQ----EVEALKRV-G-VSDSVGIDLVPY---PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 94 ~~~~~~~~l~~-~~~~~~~~~vLDiGcG~G~----~~~~l~~~-~-~~~v~gvD~s~~---~~~~~~~d~~~~~~~~~~f 163 (257)
.+.++.+-+-. ......+++||-+|+|+-. -...|++. + .+-++-.|+.+. ....+.+|......+ .+|
T Consensus 44 KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~~-~k~ 122 (299)
T PF06460_consen 44 KYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMPP-DKF 122 (299)
T ss_dssp HHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEES-S-E
T ss_pred HHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCCC-Ccc
Confidence 34444544422 2223667899999998743 12334443 2 346677777654 445667777776544 569
Q ss_pred hHHHHHHhh----ccc----cHH----HHHHHHHHhccCCcEEEEEec
Q 025148 164 DFEFSNVFD----HAL----YPD----KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 164 D~V~~~~l~----h~~----~~~----~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+|+|+... ++. ..+ -+..-+...|+-||.+.+-+-
T Consensus 123 DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 123 DLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT 170 (299)
T ss_dssp EEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred cEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee
Confidence 999997551 111 111 234556778999999999763
No 320
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=79.71 E-value=13 Score=31.74 Aligned_cols=137 Identities=11% Similarity=0.098 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCC-C-
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHR-Q- 156 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~-~- 156 (257)
..++.+.+.+..-.....|+.+|||--.-...+.......++-+|.-+. +...+..|+.+ +
T Consensus 67 tr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~ 146 (260)
T TIGR00027 67 TRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWP 146 (260)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHH
Confidence 4455555444332334579999999777666664333356777776532 23455556541 1
Q ss_pred -CCCCCchh-----HHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEeccC-CCc------------Cc-CCCC---
Q 025148 157 -PFDDETFD-----FEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHVALS-KRA------------DK-YSAN--- 210 (257)
Q Consensus 157 -~~~~~~fD-----~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~-~~~------------~~-y~~~--- 210 (257)
.+....|| ++++ .++.++.. ..++++.+.+...||+.+++..... ... .. +...
T Consensus 147 ~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (260)
T TIGR00027 147 AALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLV 226 (260)
T ss_pred HHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccc
Confidence 01122243 4555 47777663 3467888888888999999975321 000 00 0111
Q ss_pred CcCChhHHHHhcccCCcEEEEE
Q 025148 211 DLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 211 ~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
..++..++..++.+.||.....
T Consensus 227 ~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 227 FGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred cCCChhhHHHHHHHCCCeeecC
Confidence 3346677888888888765544
No 321
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=79.37 E-value=6.1 Score=33.40 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=25.4
Q ss_pred CCeEEEECCCCCHHHHHHHHc---------CCCcEEEecCCCC
Q 025148 111 ESKALCIGARVGQEVEALKRV---------GVSDSVGIDLVPY 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~---------~~~~v~gvD~s~~ 144 (257)
.-+|+|+|+|+|.++..+.+. ...+++-||+|+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY 61 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH
Confidence 369999999999999887652 1257999999987
No 322
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=77.08 E-value=6.2 Score=35.21 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=48.5
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEE-------EecCCCCC-------CCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVI-------EGDFHRQP-------FDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~-------~~d~~~~~-------~~~~~fD~V~~ 168 (257)
...++++++||=.|+|. |..+..+++. |..+|+++|.++....+. ..+..+.. ...+.+|+|+-
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid 265 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFE 265 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEE
Confidence 34467888999999764 4455555554 443699999876521110 01111100 00112444432
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ... ...++...+.|+++|.+++.
T Consensus 266 ~----~G~-~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 266 M----AGS-VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred C----CCC-hHHHHHHHHHHhcCCEEEEE
Confidence 1 111 24677888999999998764
No 323
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=76.18 E-value=5.5 Score=34.61 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=49.0
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCc-EEEecCCCCCCcE-------EEecCCCCC------CCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSD-SVGIDLVPYPPLV-------IEGDFHRQP------FDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~-------~~~d~~~~~------~~~~~fD~V~~~ 169 (257)
...+.++.+||-+|+|. |..+..+++..+.+ ++.++.+++.... ...+..+.. ...+.+|+++..
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 34457788999998652 44445555543345 8888776542110 011111111 122346666543
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+- ....+.++.+.|+++|.++..
T Consensus 234 ~~-----~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 234 TG-----VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CC-----ChHHHHHHHHHHhcCCEEEEE
Confidence 11 125778889999999998764
No 324
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=76.10 E-value=7.5 Score=33.90 Aligned_cols=84 Identities=25% Similarity=0.290 Sum_probs=47.7
Q ss_pred CCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEec---CCCCCCCCCchhHHHHHHhhccc
Q 025148 110 NESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGD---FHRQPFDDETFDFEFSNVFDHAL 175 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d---~~~~~~~~~~fD~V~~~~l~h~~ 175 (257)
++.+||-.|||. |..+..+++. |...+++++.++... .++..+ ........+.+|+++..+-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g---- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG---- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC----
Confidence 788999988765 5555556664 433788988765411 111111 0011111123666543211
Q ss_pred cHHHHHHHHHHhccCCcEEEEEe
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
....++++.+.|+++|.++...
T Consensus 241 -~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 -APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -CHHHHHHHHHHHhcCCEEEEEe
Confidence 1246788899999999988643
No 325
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=75.74 E-value=4.3 Score=36.78 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=29.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+.++++||-|.+|......++.+.+ .+|++||+|+.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~P-~~I~aVDlNp~ 68 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAGP-KRIHAVDLNPA 68 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcCC-ceEEEEeCCHH
Confidence 35788999999999666666655545 59999999987
No 326
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.49 E-value=1.4 Score=38.63 Aligned_cols=85 Identities=20% Similarity=0.165 Sum_probs=56.3
Q ss_pred CeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCC-----------CcEEEecCCCCCCCCCchhHHHHHHh-hccccHH
Q 025148 112 SKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYP-----------PLVIEGDFHRQPFDDETFDFEFSNVF-DHALYPD 178 (257)
Q Consensus 112 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~-----------~~~~~~d~~~~~~~~~~fD~V~~~~l-~h~~~~~ 178 (257)
.+|.-||-|. |..+..++--..++|+-+|+|..+ +.....+..++.-.-...|+++..++ --...|.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPk 248 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPK 248 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCce
Confidence 4778888886 777777776555699999999652 22333333332222245677777643 3445677
Q ss_pred HHHHHHHHhccCCcEEEE
Q 025148 179 KFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i 196 (257)
-..+++.+.+|||++++=
T Consensus 249 Lvt~e~vk~MkpGsVivD 266 (371)
T COG0686 249 LVTREMVKQMKPGSVIVD 266 (371)
T ss_pred ehhHHHHHhcCCCcEEEE
Confidence 788999999999998763
No 327
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.75 E-value=8.5 Score=28.64 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=46.8
Q ss_pred CCeEEEECCCCCH-HHHHHHHcCCCcEEEecCCCCC----CcEEEecCCCCCCCC-CchhHHHHHHhhccccHHHHHHHH
Q 025148 111 ESKALCIGARVGQ-EVEALKRVGVSDSVGIDLVPYP----PLVIEGDFHRQPFDD-ETFDFEFSNVFDHALYPDKFVMEI 184 (257)
Q Consensus 111 ~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~----~~~~~~d~~~~~~~~-~~fD~V~~~~l~h~~~~~~~l~~~ 184 (257)
.++|+|+|.|-=. .+..|++.| .+++++|+++.. +.+...|+.+....- ..-|+|+| +.-|.++.+.+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g-~dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYS-----iRpppEl~~~i 87 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERG-FDVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYS-----IRPPPELQSAI 87 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcC-CcEEEEecccccCcccceEEEccCCCccHHHhhCccceee-----cCCCHHHHHHH
Confidence 4599999999643 355666777 599999999873 346666665532110 11344433 33455566666
Q ss_pred HHhccCCc-EEEE
Q 025148 185 ERTLKPGG-VCVL 196 (257)
Q Consensus 185 ~r~LkpgG-~l~i 196 (257)
.++-+.=| -+++
T Consensus 88 ldva~aVga~l~I 100 (129)
T COG1255 88 LDVAKAVGAPLYI 100 (129)
T ss_pred HHHHHhhCCCEEE
Confidence 66555434 3444
No 328
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=73.98 E-value=6 Score=35.25 Aligned_cols=85 Identities=11% Similarity=-0.104 Sum_probs=46.0
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEE--------EecCCCC-CC--CCCchhHHHHHHhhccc
Q 025148 108 LSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVI--------EGDFHRQ-PF--DDETFDFEFSNVFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~--------~~d~~~~-~~--~~~~fD~V~~~~l~h~~ 175 (257)
.+++++||-.|||. |..+..+++....+++++|.++...... ..+..+. .+ ..+.+|+|+ +...
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vi----d~~g 256 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYII----DTVS 256 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEE----ECCC
Confidence 46788999898864 5555556665345788887765421100 0000000 00 001234433 2222
Q ss_pred cHHHHHHHHHHhccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ...+++..+.|++||.++..
T Consensus 257 ~-~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 257 A-VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred C-HHHHHHHHHHhcCCcEEEEe
Confidence 2 23677888999999998864
No 329
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=73.98 E-value=1.2 Score=40.19 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=52.7
Q ss_pred CCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCCCCcEEEecCCCCCC------------------CCCchhHHHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPYPPLVIEGDFHRQPF------------------DDETFDFEFSNV 170 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~~~~d~~~~~~------------------~~~~fD~V~~~~ 170 (257)
+-++||.=+|+|.=+..++.. +..+|+.-|+|++.+..+..++.-... ..+.||+| =
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~I---D 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVI---D 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEE---E
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEE---E
Confidence 458999999999888777765 456899999998733333322221111 22334444 1
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++-+..|..++..+.+.+|.||.+.++.
T Consensus 127 lDPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 LDPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp E--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 1222356789999999999999999985
No 330
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=73.89 E-value=5.5 Score=33.58 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=49.1
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCCc-EEEecCCCCCCcEE--Ee--c--C--CCCCCCCCchhHHHHHHhhccc
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVSD-SVGIDLVPYPPLVI--EG--D--F--HRQPFDDETFDFEFSNVFDHAL 175 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~~--~~--d--~--~~~~~~~~~fD~V~~~~l~h~~ 175 (257)
..+.++.++|-.|||. |..+..+++....+ |++++.+++..... .+ + . .+.......+|+|+..+.
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASG---- 168 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccC----
Confidence 4457788999998764 44555555543346 99998765421100 00 0 0 000012234676654321
Q ss_pred cHHHHHHHHHHhccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
....+.+..+.|+++|.++..
T Consensus 169 -~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 169 -SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred -ChHHHHHHHHHhcCCcEEEEE
Confidence 124677888999999998764
No 331
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.80 E-value=3.4 Score=36.93 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=57.2
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCCCCcEEEecCCCC-----CCCC-CchhHHHHH--Hhhccc-----c
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPYPPLVIEGDFHRQ-----PFDD-ETFDFEFSN--VFDHAL-----Y 176 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~~~~d~~~~-----~~~~-~~fD~V~~~--~l~h~~-----~ 176 (257)
..+|||.=+|+|.=+..++.. +..+|+.-|+|++.++.+..++... ...+ +..-+...+ .+++++ .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFGS 132 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPFGS 132 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCCCC
Confidence 679999999999988888765 5448999999998443333332221 1111 111111111 333332 5
Q ss_pred HHHHHHHHHHhccCCcEEEEEe
Q 025148 177 PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|..++....+.++.||++.++.
T Consensus 133 PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 133 PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CchHHHHHHHHhhcCCEEEEEe
Confidence 6789999999999999999985
No 332
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=73.18 E-value=12 Score=33.21 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=50.2
Q ss_pred hcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcEE--------EecCCCC-C-------CCCCchhHHH
Q 025148 106 KLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLVI--------EGDFHRQ-P-------FDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~~--------~~d~~~~-~-------~~~~~fD~V~ 167 (257)
..++++++||=.|+ |.|..+..+++....+|++++.+++..... ..|..+. . ...+.+|+|+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 44678899999998 356777777775445899998775422111 0011000 0 0011244433
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ... ...+....+.|++||.+++.
T Consensus 234 d----~vG--~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 234 D----NVG--GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred E----CCC--HHHHHHHHHHhccCCEEEEE
Confidence 2 222 24678889999999998864
No 333
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.05 E-value=1.1 Score=41.45 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=57.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCCCCcEEEecCCCC--------------------CCCCCchhHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPYPPLVIEGDFHRQ--------------------PFDDETFDFEF 167 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~~~~d~~~~--------------------~~~~~~fD~V~ 167 (257)
++-+|||.=|++|.-+...+.. +..+|++-|.++..+..++.+++-. +-.+..||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI- 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI- 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE-
Confidence 4458999999999988888774 5668999999987443222222211 1112334444
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
-|+-+..+..+|....+.++.||.|.++.
T Consensus 188 --DLDPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 --DLDPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred --ecCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 12222246689999999999999999985
No 334
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=71.65 E-value=9.9 Score=34.05 Aligned_cols=47 Identities=21% Similarity=0.086 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc---------CCCcEEEecCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRV---------GVSDSVGIDLVPY 144 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---------~~~~v~gvD~s~~ 144 (257)
.+..++.+.-....-.++|+|.|+|.++.-+.+. ...++.-|++|++
T Consensus 65 ~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~ 120 (370)
T COG1565 65 QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE 120 (370)
T ss_pred HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH
Confidence 3333333333344568999999999998776542 2468899999976
No 335
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=71.11 E-value=14 Score=32.01 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=50.0
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCC-CC-----CCCCCchhHHH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFH-RQ-----PFDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~-~~-----~~~~~~fD~V~ 167 (257)
...++++.+||=.|+ |.|..+..+++....+|++++.+++.. .++..+-. .. ....+.+|+|+
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~ 212 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYF 212 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEE
Confidence 445678899999985 356677777775445899888775421 11111100 00 00112344443
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. .... ..+.+..++|++||.++..
T Consensus 213 d----~~G~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 213 D----NVGG--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred E----CCCH--HHHHHHHHHhCcCcEEEEe
Confidence 2 2221 3567888999999999864
No 336
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=70.55 E-value=5.9 Score=36.72 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=22.1
Q ss_pred CCCeEEEECCCC-CH-HHHHHHHcCCCcEEEecCC
Q 025148 110 NESKALCIGARV-GQ-EVEALKRVGVSDSVGIDLV 142 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s 142 (257)
.+++||=||||. |. ++..|+..|..+|+-||.+
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlD 45 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLD 45 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEecc
Confidence 478999999983 32 2333344477788888766
No 337
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=70.47 E-value=8.8 Score=33.55 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=46.4
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHcCCCc-EEEecCCCCCCcE-------EEecCCCCC-------CCCCchhHHHHHH
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRVGVSD-SVGIDLVPYPPLV-------IEGDFHRQP-------FDDETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~V~~~~ 170 (257)
.+.++.+||=+|+|. |..+..+++....+ |+++|.+++.... ...+..+.. .....+|+|+..+
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 356788999998753 34444455543346 9999887652110 001111100 0112355544321
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ....+....+.|+++|.+++.
T Consensus 240 ----g-~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 240 ----G-NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred ----C-CHHHHHHHHHHhhcCCEEEEE
Confidence 1 123557778899999998864
No 338
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=70.32 E-value=3.1 Score=37.70 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=39.9
Q ss_pred CcEEEecCCCC--CCCCCchhH-HHHHHhhcccc--HHHHHHHHHHhccCCcEEEEEec
Q 025148 146 PLVIEGDFHRQ--PFDDETFDF-EFSNVFDHALY--PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 146 ~~~~~~d~~~~--~~~~~~fD~-V~~~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+.+..+++.+. ..+++++|. |++++++++.+ ..+.++++.+.++|||++++-..
T Consensus 277 v~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 277 VRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred EEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 44555555543 246788997 67788888874 44678999999999999999764
No 339
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=69.22 E-value=5.1 Score=36.71 Aligned_cols=87 Identities=11% Similarity=0.016 Sum_probs=48.1
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEEEecCC-CCCCC--CCchhHHHHHHhhccccHHHHHH
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFH-RQPFD--DETFDFEFSNVFDHALYPDKFVM 182 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~-~~~~~--~~~fD~V~~~~l~h~~~~~~~l~ 182 (257)
....|++|+=+|||. |......++...++|+.+|.++........+.. ..+.. -...|+|+.. ...+ ..+.
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~a----tG~~-~~i~ 272 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTT----TGNK-DIIT 272 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEEC----CCCH-HHHH
Confidence 345789999999997 555444444333489999998762111100000 00000 0134655432 1222 3454
Q ss_pred -HHHHhccCCcEEEEEe
Q 025148 183 -EIERTLKPGGVCVLHV 198 (257)
Q Consensus 183 -~~~r~LkpgG~l~i~~ 198 (257)
+..+.+|+||+++..-
T Consensus 273 ~~~l~~mk~GgilvnvG 289 (413)
T cd00401 273 GEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHhcCCCCcEEEEeC
Confidence 4588999999987653
No 340
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=68.59 E-value=14 Score=31.44 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=55.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHc----C-CCcEEEecCCCC----------------CCcEEEecCCCC--CCCCCchhH-
Q 025148 110 NESKALCIGARVGQEVEALKRV----G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ--PFDDETFDF- 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~----------------~~~~~~~d~~~~--~~~~~~fD~- 165 (257)
.+...+|+|+|+..-+..|.+. + ..+.+.+|+|.. .+.-+++|.... ..+...--+
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 3679999999999888777652 2 257899999965 122233333211 111111111
Q ss_pred HHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++- .++..+. +-..++..+...|.||-.+++.+.
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 122 2444443 234578999999999999999873
No 341
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=68.26 E-value=14 Score=31.90 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=49.2
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCC-----CCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQ-----PFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~-----~~~~~~fD~V~~ 168 (257)
...++++.+||=.|+ |.|..+..+++..+.+|++++.+++.. .++...-.+. ....+.+|+|+.
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence 344678889998885 345666666765445899988765421 1111110000 001123444432
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. +. ...+++..+.|+++|.++..
T Consensus 218 ~----~g--~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 218 N----VG--GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred C----CC--HHHHHHHHHhhccCCEEEEE
Confidence 1 11 15678889999999998764
No 342
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=67.58 E-value=7.5 Score=33.01 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE-EEEecCCC
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR-VRKVDGFG 237 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~-~~~~~gf~ 237 (257)
..+|+.++..|.|||++++... .. --..+.+..++.+.++.. +..+++.+
T Consensus 192 ~~aLe~lyprl~~GGiIi~DDY--------~~--~gcr~AvdeF~~~~gi~~~l~~id~~~ 242 (248)
T PF05711_consen 192 KDALEFLYPRLSPGGIIIFDDY--------GH--PGCRKAVDEFRAEHGITDPLHPIDWTG 242 (248)
T ss_dssp HHHHHHHGGGEEEEEEEEESST--------TT--HHHHHHHHHHHHHTT--S--EE-SSS-
T ss_pred HHHHHHHHhhcCCCeEEEEeCC--------CC--hHHHHHHHHHHHHcCCCCccEEecCce
Confidence 4678999999999999999442 11 002445667777888754 44444444
No 343
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=67.58 E-value=6.4 Score=34.66 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcCCCCCe--EEEECCCCCHHHHHHHHc-CCCcEEEecCCCC
Q 025148 95 FAKFFDDLKRKKLLSNESK--ALCIGARVGQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~--vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
|..++.+++......++.. -+|||.|.-.+--.+... .....+++|+.+.
T Consensus 85 YihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~ 137 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDM 137 (419)
T ss_pred hHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeecccc
Confidence 4566777776654433333 489999877665555432 3347888888755
No 344
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.07 E-value=11 Score=32.90 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=48.2
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCc-EEEecCCCCCCc---------EEEecCCCC---------CCCCCchh
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSD-SVGIDLVPYPPL---------VIEGDFHRQ---------PFDDETFD 164 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~---------~~~~d~~~~---------~~~~~~fD 164 (257)
...++++.+||-.|+|. |..+..+++....+ |++++.++.... ++..+-.+. ......+|
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCC
Confidence 44567888988888754 55555566643335 888876654211 111110000 01122355
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+..+- ....+.+..+.|+++|.++..
T Consensus 237 ~vld~~g-----~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 237 VVIECTG-----AESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred EEEECCC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 5543211 123678889999999998764
No 345
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=67.04 E-value=3.9 Score=33.26 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhccCCcEEEEEec
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
....+.+++|+|||||.+++.+.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHhhcCCCeeEEEEec
Confidence 45789999999999999999875
No 346
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=66.50 E-value=11 Score=32.19 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=45.7
Q ss_pred CCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEE-------EecCCCCC-----C-CCCchhHHHHHHhhc
Q 025148 109 SNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVI-------EGDFHRQP-----F-DDETFDFEFSNVFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~-------~~d~~~~~-----~-~~~~fD~V~~~~l~h 173 (257)
.++++||=+|+|. |..+..+++. +..+|+++|.++...... ..+..+.. . ....+|+|+- .
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid----~ 194 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALE----F 194 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEE----C
Confidence 4788999998764 4444555554 543489998776521110 00111000 0 0112343322 1
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
... ...+++..+.|+++|.+++.-
T Consensus 195 ~G~-~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 195 SGA-TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCC-hHHHHHHHHHhcCCCEEEEec
Confidence 111 246788899999999988653
No 347
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=65.57 E-value=16 Score=31.59 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=50.0
Q ss_pred hcCCCCCeEEEECCC-CCHHHHHHHHcCCCcEEEecCCCCCCc---------EEEecCCCCC-CCCCchhHHHHHHhhcc
Q 025148 106 KLLSNESKALCIGAR-VGQEVEALKRVGVSDSVGIDLVPYPPL---------VIEGDFHRQP-FDDETFDFEFSNVFDHA 174 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~~~---------~~~~d~~~~~-~~~~~fD~V~~~~l~h~ 174 (257)
..+.++.+||-+||| .|..+..+++..+.+|++++.++.... ++........ -..+.+|+++..+.
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~--- 234 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV--- 234 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC---
Confidence 345778899999986 455555555543358899887764211 1111000000 01134666543211
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
....+.++.+.|+++|.++...
T Consensus 235 --~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 --SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --cHHHHHHHHHhcccCCEEEEEC
Confidence 1246788889999999888653
No 348
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=65.22 E-value=23 Score=31.17 Aligned_cols=85 Identities=20% Similarity=0.114 Sum_probs=44.7
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHcCCC-cEEEecCCCCCCcE-------EEecCCCCCC-----------CCCchhHHH
Q 025148 108 LSNESKALCIGARV-GQEVEALKRVGVS-DSVGIDLVPYPPLV-------IEGDFHRQPF-----------DDETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~-------~~~d~~~~~~-----------~~~~fD~V~ 167 (257)
..++.+||=.|+|. |..+..+++.... +|++++.+++.... ...+..+..+ ..+.+|+|+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vi 254 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVI 254 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEE
Confidence 35788888888642 3333444554334 89999876542110 0001111111 112345443
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
..+ . ....+.+..+.|+++|.++..
T Consensus 255 d~~----g-~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 255 EAS----G-HPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred ECC----C-ChHHHHHHHHHhccCCEEEEE
Confidence 211 0 124677888999999999865
No 349
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=63.64 E-value=11 Score=32.98 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=49.6
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEE-------EecCCCCC--------CCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVI-------EGDFHRQP--------FDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~-------~~d~~~~~--------~~~~~fD~V~~ 168 (257)
...+.++.+||-.|+|. |..+..+++.-+.+|+++..+++..... ..+..+.. .++..+|+++.
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence 34457788999998764 5566666665445888886664421110 00111100 01123444433
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+- ....+.++.+.|+++|.++..
T Consensus 234 ~~g-----~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 234 ATG-----NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 211 135678889999999998754
No 350
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.49 E-value=15 Score=30.69 Aligned_cols=35 Identities=17% Similarity=-0.045 Sum_probs=26.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~ 144 (257)
....||-.||..|.++..++.. .+..|+++--+-+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccc
Confidence 4578999999999999888763 3458888755433
No 351
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=62.32 E-value=19 Score=32.06 Aligned_cols=88 Identities=13% Similarity=0.181 Sum_probs=50.0
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHH-cCCCcEEEecCCCCCCcE----EEecCCCCCCCCCch-hHH-----HHH---
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKR-VGVSDSVGIDLVPYPPLV----IEGDFHRQPFDDETF-DFE-----FSN--- 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~----~~~d~~~~~~~~~~f-D~V-----~~~--- 169 (257)
....++|..|.-+|||. |..+..-+. .+..+++++|+++....+ =..+.. ..... |++ +..
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~v----n~~~~~~vv~~i~~~T~gG~ 255 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFV----NPKEVDDVVEAIVELTDGGA 255 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceee----cchhhhhHHHHHHHhcCCCC
Confidence 44558899999999985 444444344 377799999999872110 000100 01111 222 111
Q ss_pred --HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 --VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 --~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+++..-+.. .++.....+.++|..++.
T Consensus 256 d~~~e~~G~~~-~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 256 DYAFECVGNVE-VMRQALEATHRGGTSVII 284 (366)
T ss_pred CEEEEccCCHH-HHHHHHHHHhcCCeEEEE
Confidence 233333443 777777888889987765
No 352
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=61.14 E-value=25 Score=30.65 Aligned_cols=84 Identities=13% Similarity=0.104 Sum_probs=46.6
Q ss_pred CCCC--CeEEEECC--CCCHHHHHHHHcCCC-cEEEecCCCCCCcEE--------EecCCCCC-------CCCCchhHHH
Q 025148 108 LSNE--SKALCIGA--RVGQEVEALKRVGVS-DSVGIDLVPYPPLVI--------EGDFHRQP-------FDDETFDFEF 167 (257)
Q Consensus 108 ~~~~--~~vLDiGc--G~G~~~~~l~~~~~~-~v~gvD~s~~~~~~~--------~~d~~~~~-------~~~~~fD~V~ 167 (257)
++++ ++||=.|+ |.|..+..+++.-.. +|++++.+++..... ..+..+.. ..++.+|+|+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEE
Confidence 4544 79999986 346666667765344 799998775421110 00111110 0112355544
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. .... ..+.+..+.|+++|.++..
T Consensus 230 d----~~g~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 D----NVGG--EISDTVISQMNENSHIILC 253 (345)
T ss_pred E----CCCc--HHHHHHHHHhccCCEEEEE
Confidence 2 2222 2357788999999998864
No 353
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=61.12 E-value=19 Score=29.06 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhccCCcEEEEEe
Q 025148 177 PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...+++.+.+.|++|-.+++..
T Consensus 99 v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 99 VESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp HHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHHHhhcceEEEcc
Confidence 4578899999999977777753
No 354
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=61.03 E-value=18 Score=28.58 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=52.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----CC-cEEEecCCCC-CCC---CCchhHHHHH-HhhccccH-H
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----PP-LVIEGDFHRQ-PFD---DETFDFEFSN-VFDHALYP-D 178 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----~~-~~~~~d~~~~-~~~---~~~fD~V~~~-~l~h~~~~-~ 178 (257)
.+.+|+.|||=+-.....-......+++-.|++.. .. .++.=|.... .++ .++||+|+++ =+- ..+- .
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl-~~ec~~ 103 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEELKGKFDVVVIDPPFL-SEECLT 103 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhcCCCceEEEECCCCC-CHHHHH
Confidence 45799999998654443331234558888888865 11 2444444432 111 4689998775 220 0111 1
Q ss_pred HHHHHHHHhccCCcEEEEEec
Q 025148 179 KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+..+.+...+|+++.+++.++
T Consensus 104 k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 104 KTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred HHHHHHHHHhCccceEEEecH
Confidence 344556666688899998874
No 355
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=60.65 E-value=2.1 Score=31.76 Aligned_cols=73 Identities=19% Similarity=0.107 Sum_probs=41.8
Q ss_pred CCHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCC-----C-CCCCchhHHHHHHhhccccHHHHHHHHH
Q 025148 121 VGQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQ-----P-FDDETFDFEFSNVFDHALYPDKFVMEIE 185 (257)
Q Consensus 121 ~G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~-----~-~~~~~fD~V~~~~l~h~~~~~~~l~~~~ 185 (257)
-|..+..+++.-..+|+++|.++... .++..+-.+. . ..++.+|+|+ +.... ...++...
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vi----d~~g~-~~~~~~~~ 76 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVI----DCVGS-GDTLQEAI 76 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEE----ESSSS-HHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEE----EecCc-HHHHHHHH
Confidence 46677777775337999999887521 1111111110 0 1112344432 22222 36889999
Q ss_pred HhccCCcEEEEEe
Q 025148 186 RTLKPGGVCVLHV 198 (257)
Q Consensus 186 r~LkpgG~l~i~~ 198 (257)
.+|+++|.+++.-
T Consensus 77 ~~l~~~G~~v~vg 89 (130)
T PF00107_consen 77 KLLRPGGRIVVVG 89 (130)
T ss_dssp HHEEEEEEEEEES
T ss_pred HHhccCCEEEEEE
Confidence 9999999999874
No 356
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=60.12 E-value=9.1 Score=33.50 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=48.8
Q ss_pred hcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCc----------EEEecCC-CC-----CCCCCchhHHH
Q 025148 106 KLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPL----------VIEGDFH-RQ-----PFDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~----------~~~~d~~-~~-----~~~~~~fD~V~ 167 (257)
..+++|++||=.|+ |.|..+..+++..+.+|++++.+++... ++..+-. +. ....+.+|+|+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~ 226 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYF 226 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEE
Confidence 44678999999997 3456666666654458888876654211 1110000 00 00012344443
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. .+. ...+.+..+.|+++|.++..
T Consensus 227 d----~~g--~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 227 D----NVG--GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred E----CCC--HHHHHHHHHHhccCcEEEEe
Confidence 2 222 25678889999999998864
No 357
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=59.95 E-value=16 Score=31.86 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=46.7
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCC--------CCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQP--------FDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V~~~ 169 (257)
.++++.+||..|+|. |..+..+++. +...+++++.++..... ...+..+.. .+++.+|+++..
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~ 243 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEA 243 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEc
Confidence 356788999877652 5555555554 43478888765441110 001111110 112345555432
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+- ....+.+..+.|+++|.++..
T Consensus 244 ~g-----~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 244 VG-----FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 11 124778888999999998754
No 358
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=59.75 E-value=31 Score=27.14 Aligned_cols=86 Identities=12% Similarity=0.153 Sum_probs=37.9
Q ss_pred CCCCeEEEECCCCCHHH-HHHHHcCC-CcEEEecCCCCCC-------cEEEecCCCCCCCCCchhHHHHHHhhccccHHH
Q 025148 109 SNESKALCIGARVGQEV-EALKRVGV-SDSVGIDLVPYPP-------LVIEGDFHRQPFDDETFDFEFSNVFDHALYPDK 179 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~-~~l~~~~~-~~v~gvD~s~~~~-------~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~~ 179 (257)
..+.+|.=.|+|....+ ..+..... .-.+.+|.++... .+-...... +.+...|+|+-.... ..++
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~--l~~~~pd~vivlaw~---y~~E 140 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEE--LKERKPDYVIVLAWN---YKDE 140 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG----SS--SEEEES-GG---GHHH
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHH--HhhCCCCEEEEcChh---hHHH
Confidence 45788999999986554 33333322 2345678876621 111111111 223456764321111 1347
Q ss_pred HHHHHHHhccCCcEEEEEec
Q 025148 180 FVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~~~ 199 (257)
.++.+...++.||.+++-+|
T Consensus 141 I~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 141 IIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp HHHHTHHHHHTT-EEEE-SS
T ss_pred HHHHHHHHHhcCCEEEEeCC
Confidence 88888889999999998654
No 359
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=58.92 E-value=45 Score=28.74 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=47.9
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCCCCCchhHHHHHHhhcccc
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPFDDETFDFEFSNVFDHALY 176 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~~~~~fD~V~~~~l~h~~~ 176 (257)
...++++.++|=.|||. |..+..+++....+++.++.++..... ...+.... .++.+|+++... .
T Consensus 162 ~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~vD~vi~~~----~- 234 (329)
T cd08298 162 LAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDL--PPEPLDAAIIFA----P- 234 (329)
T ss_pred hhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCcc--CCCcccEEEEcC----C-
Confidence 34456778888887653 223333444444588888776542110 00111111 234577654311 1
Q ss_pred HHHHHHHHHHhccCCcEEEEE
Q 025148 177 PDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~ 197 (257)
....++++.+.|+++|.++..
T Consensus 235 ~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 235 VGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred cHHHHHHHHHHhhcCCEEEEE
Confidence 124788899999999998864
No 360
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.71 E-value=13 Score=32.95 Aligned_cols=88 Identities=14% Similarity=0.021 Sum_probs=51.2
Q ss_pred cCCCCCeEEEECCC-CCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCC---CCCCCchhHHHHHHhh
Q 025148 107 LLSNESKALCIGAR-VGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQ---PFDDETFDFEFSNVFD 172 (257)
Q Consensus 107 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~---~~~~~~fD~V~~~~l~ 172 (257)
-+.+|.++--+|.| -|.++..+++.-..+|+++|-+.. .-.++... ++- .--.++.|.++-.+..
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~-~d~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDST-EDPDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEec-CCHHHHHHHHHhhcCcceeeee
Confidence 34588888888854 588888888864459999999863 11122111 000 0001233433221111
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. -...+..+.+.||++|.+++.-
T Consensus 257 ~---a~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 257 L---AEHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred c---cccchHHHHHHhhcCCEEEEEe
Confidence 0 2356777889999999988763
No 361
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=58.41 E-value=28 Score=30.79 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=44.4
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHHcCCCc-EEEecCCCCCCc---------EEEecCCCC------CCCCCchhHHHHHH
Q 025148 108 LSNESKALCIGAR-VGQEVEALKRVGVSD-SVGIDLVPYPPL---------VIEGDFHRQ------PFDDETFDFEFSNV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~~~---------~~~~d~~~~------~~~~~~fD~V~~~~ 170 (257)
+.++.+||-.|+| .|..+..+++....+ +++++.++.... ++..+-.+. ...+..+|+|+..
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~- 263 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEA- 263 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEe-
Confidence 4677888877654 234444445543335 888876654211 111110000 0112335554432
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+... ..+.++.+.|+++|.++...
T Consensus 264 ---vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 264 ---LGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred ---CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 2221 36788899999999988653
No 362
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=58.20 E-value=19 Score=31.66 Aligned_cols=86 Identities=15% Similarity=0.079 Sum_probs=46.1
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCC-------CCCCchh-HHHHH
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQP-------FDDETFD-FEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~-------~~~~~fD-~V~~~ 169 (257)
...++.+||=.|||. |..+..+++. +...|+++|.+++.... ...+..+.. .....+| +|+
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~-- 234 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLIL-- 234 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEE--
Confidence 456788999998754 4444455554 54347888877652111 000111100 0112233 222
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.... ...+.+..+.|++||.+++.
T Consensus 235 --d~~G~-~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 235 --ETAGV-PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred --ECCCC-HHHHHHHHHHhhcCCEEEEE
Confidence 11111 24778888999999998875
No 363
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=58.13 E-value=9 Score=35.57 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=56.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCCCCc---------------EEEecCCC-------CCCCCCchhH
Q 025148 109 SNESKALCIGARVGQEVEALKR-VGVSDSVGIDLVPYPPL---------------VIEGDFHR-------QPFDDETFDF 165 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~---------------~~~~d~~~-------~~~~~~~fD~ 165 (257)
..+.++|-+|-|.|.+...+.. .+...++++++.|.... +...|..+ ..-.+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 5567899999999999888876 46679999999887211 11111110 0113455676
Q ss_pred HHHH----Hhhcccc------HHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSN----VFDHALY------PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~----~l~h~~~------~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++-+ -.+.+.- ...++..++.+|.|.|.+++..
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 5332 1111111 2356788999999999998874
No 364
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=57.92 E-value=28 Score=29.61 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=45.9
Q ss_pred chhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 162 TFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
.+|+.+-+.+.-..|| .+.+..+.+..++||.+.--+ +..-+++-+.++|+. +....||+
T Consensus 168 ~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~s---------------sA~~vRr~L~~aGF~-v~~r~g~g 231 (252)
T COG4121 168 GTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATFA---------------AAIAVRRRLEQAGFT-VEKRTGRG 231 (252)
T ss_pred CccEEecCCccccCChhhccHHHHHHHHhhcCCCCceechH---------------HHHHHHHHHHHcCce-eeecCCcc
Confidence 6888888877777777 357899999999999976422 355567778888985 55557877
Q ss_pred Cc
Q 025148 238 LD 239 (257)
Q Consensus 238 ~~ 239 (257)
-.
T Consensus 232 rK 233 (252)
T COG4121 232 KK 233 (252)
T ss_pred cc
Confidence 43
No 365
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=56.69 E-value=16 Score=31.89 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=29.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..|.+|.-+|+|......+++..+. +|.+||+++.
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~a 96 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPA 96 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHH
Confidence 6678999999996667777777665 9999999976
No 366
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.59 E-value=21 Score=31.40 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=47.5
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCCC--------CCCchhHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQPF--------DDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~V~~ 168 (257)
..++++.+||-.|+|. |..+..+++. |...++++|.+++.... ...+..+..+ ....+|+|+.
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 4457788999998753 4444555554 54468999877541110 0011111110 1123444432
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ... ...+.++.+.|+++|.++..
T Consensus 242 ~----~g~-~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 242 A----GGG-QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred C----CCC-HHHHHHHHHHhhcCCEEEEe
Confidence 1 111 25778899999999988754
No 367
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=55.51 E-value=41 Score=31.01 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=45.9
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEEEec-CCCCCCC--CCchhHHHHHHhhccccHHHHHH-
Q 025148 108 LSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVIEGD-FHRQPFD--DETFDFEFSNVFDHALYPDKFVM- 182 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d-~~~~~~~--~~~fD~V~~~~l~h~~~~~~~l~- 182 (257)
.-.|.+|+=+|+|. |......++.-..+|+.+|.++........+ +.-.++. -...|+|+..+ . ...++.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G-~~~vI~~ 283 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----G-NKDVITA 283 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----C-CHHHHHH
Confidence 34788999999985 3332222332234899999987532110000 0000100 02356554321 1 224554
Q ss_pred HHHHhccCCcEEEEEe
Q 025148 183 EIERTLKPGGVCVLHV 198 (257)
Q Consensus 183 ~~~r~LkpgG~l~i~~ 198 (257)
+..+.+|+|++++..-
T Consensus 284 ~~~~~mK~GailiNvG 299 (425)
T PRK05476 284 EHMEAMKDGAILANIG 299 (425)
T ss_pred HHHhcCCCCCEEEEcC
Confidence 6888899999887653
No 368
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=54.90 E-value=17 Score=32.14 Aligned_cols=88 Identities=19% Similarity=0.154 Sum_probs=51.1
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCC--------CCCCchhHH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQP--------FDDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V 166 (257)
...++++++||=.|+ |-|.++..|++. |. .++++--+++...+ ...+..+.+ .....+|+|
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence 444677999999995 446777788875 54 66666555441110 011111110 111246665
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+..+-. ..+.+..+.|+++|.++....
T Consensus 216 ~D~vG~------~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 216 LDTVGG------DTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EECCCH------HHHHHHHHHhccCCEEEEEec
Confidence 554322 567778899999999888653
No 369
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=54.21 E-value=5.1 Score=28.54 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=12.6
Q ss_pred EEEECCCCCHHHHHHHH
Q 025148 114 ALCIGARVGQEVEALKR 130 (257)
Q Consensus 114 vLDiGcG~G~~~~~l~~ 130 (257)
-+|||||.|.......+
T Consensus 6 NIDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFR 22 (124)
T ss_pred ccccccCCCcchhhhhh
Confidence 47999999987655433
No 370
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=53.89 E-value=23 Score=30.45 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=47.6
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHH---HHcCCCcEEEecCCCCCCcE-------EEecCCCCCCCCCchhHHHHHHhhcc
Q 025148 105 KKLLSNESKALCIGARVGQEVEAL---KRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l---~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~~~~~fD~V~~~~l~h~ 174 (257)
...+.++.+||=.|+ |.++..+ ++..+.++++++.+++.... ...+..+ ....+.+|+++..+-
T Consensus 150 ~~~~~~g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~vid~~g--- 223 (319)
T cd08242 150 QVPITPGDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEA-ESEGGGFDVVVEATG--- 223 (319)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccc-cccCCCCCEEEECCC---
Confidence 344577889998875 4555444 44333478888876542111 0111111 123345777654211
Q ss_pred ccHHHHHHHHHHhccCCcEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i 196 (257)
....+....+.|+++|.+++
T Consensus 224 --~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 224 --SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred --ChHHHHHHHHHhhcCCEEEE
Confidence 12467778889999999887
No 371
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=51.76 E-value=23 Score=31.11 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=21.6
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+...++++..+..+|+|||++++.+
T Consensus 215 EL~~L~~~L~~~~~~L~~gGrl~VIS 240 (305)
T TIGR00006 215 ELEELEEALQFAPNLLAPGGRLSIIS 240 (305)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 34456688999999999999999976
No 372
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=51.08 E-value=36 Score=28.58 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=28.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
-.++-|.+||.|.|.++..+.+.+..+...++++..
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~R 84 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTR 84 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccc
Confidence 345679999999999999999877666666666644
No 373
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=50.59 E-value=24 Score=33.63 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=50.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHc----CCCcEEEecCCCC----------------CCcEEEecCCCCC-----CCCCchh
Q 025148 110 NESKALCIGARVGQEVEALKRV----GVSDSVGIDLVPY----------------PPLVIEGDFHRQP-----FDDETFD 164 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~----------------~~~~~~~d~~~~~-----~~~~~fD 164 (257)
.|++||=-|.| |.++..+.++ +..+++-+|.++. ...+..+|..+.. +.+-+.|
T Consensus 249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 45678877766 8888777653 4458899998866 3456677777642 4455688
Q ss_pred HHHH-HHhhccc----cHHHHH
Q 025148 165 FEFS-NVFDHAL----YPDKFV 181 (257)
Q Consensus 165 ~V~~-~~l~h~~----~~~~~l 181 (257)
+|+. ..+-|++ +|.+++
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai 349 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAI 349 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHH
Confidence 8876 5888987 777765
No 374
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=50.57 E-value=22 Score=31.03 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=44.0
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHcCCC-cEEEecCCCCCCcE-------EEecCCCCC-------CCCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARV-GQEVEALKRVGVS-DSVGIDLVPYPPLV-------IEGDFHRQP-------FDDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~V~~~~l 171 (257)
..++.+||-.|+|. |..+..+++.... .|++++-++..... ...+..... ...+.+|+|+..+-
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g 240 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSG 240 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCC
Confidence 35678888877643 4444555554334 68888655431100 000111000 11123455443211
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
....+.++.+.|+++|.++..
T Consensus 241 -----~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 241 -----NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred -----CHHHHHHHHHHhccCCEEEEE
Confidence 124677888999999998765
No 375
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.46 E-value=15 Score=31.48 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=47.1
Q ss_pred eEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCCCc------------E-EEecCC---------CC----CC-CCCch
Q 025148 113 KALCIGARV--GQEVEALKRVGVSDSVGIDLVPYPPL------------V-IEGDFH---------RQ----PF-DDETF 163 (257)
Q Consensus 113 ~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~------------~-~~~d~~---------~~----~~-~~~~f 163 (257)
+|-=||+|. +.++..++..+. +|+++|.+++... . ..+... .+ +. .-+..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~a 83 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKDA 83 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccC
Confidence 577788874 455556666665 9999998876321 0 000000 00 00 01234
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEE
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
|+|+-.+-+.+.-..++++++.+.++++..+.-
T Consensus 84 DlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 84 DLVIEAATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred CeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 665444444444445788999999999877643
No 376
>PRK08223 hypothetical protein; Validated
Probab=48.77 E-value=25 Score=30.51 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=26.5
Q ss_pred CCCeEEEECCCC-C-HHHHHHHHcCCCcEEEecCCC
Q 025148 110 NESKALCIGARV-G-QEVEALKRVGVSDSVGIDLVP 143 (257)
Q Consensus 110 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~ 143 (257)
...+||=+|||. | ..+..|+..|.++++-+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 357999999994 3 456777778888999998773
No 377
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=48.66 E-value=2.8 Score=38.26 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=33.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..++|..|-|+-||-|-++..++..+ ++|++-|.+++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpe 282 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPE 282 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHH
Confidence 56889999999999999999988866 79999999987
No 378
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=47.65 E-value=86 Score=27.19 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=47.2
Q ss_pred hcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCC-------CCcEEEecCCCC-----CCCCCchhHHHHHHh
Q 025148 106 KLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPY-------PPLVIEGDFHRQ-----PFDDETFDFEFSNVF 171 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~-------~~~~~~~d~~~~-----~~~~~~fD~V~~~~l 171 (257)
..+.++.+||=.|+. -|..+..+++....++++++.+.. ....+....... ......+|+|+..+-
T Consensus 173 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 252 (350)
T cd08274 173 AGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVG 252 (350)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCchhhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCC
Confidence 345778999999982 244555555544457888775432 111111000000 012234666654322
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ..+.+..+.|+++|.++..
T Consensus 253 ~------~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 253 G------PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred H------HHHHHHHHHhccCCEEEEe
Confidence 1 3567888999999998753
No 379
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=47.61 E-value=30 Score=30.21 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=22.1
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.+...+.+|..+..+|+|||++++.+
T Consensus 210 ~El~~L~~~L~~~~~~L~~gGrl~vis 236 (296)
T PRK00050 210 DELEELERALEAALDLLKPGGRLAVIS 236 (296)
T ss_pred hhHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 344456688999999999999999976
No 380
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=47.07 E-value=59 Score=28.73 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=47.2
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCC--------CCCCchhHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQP--------FDDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V~~ 168 (257)
..+.++.+||-.|+|. |..+..+++. +...|++++.++..... ...+..... .+.+.+|+++.
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld 257 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFE 257 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEE
Confidence 4456788999988742 4444555554 44348888776542111 000111100 01233555443
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+- ....+.++.+.|+++|.++..
T Consensus 258 ~~~-----~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 258 AVG-----RAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred cCC-----ChHHHHHHHHHhhcCCeEEEE
Confidence 211 135678889999999998765
No 381
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=46.73 E-value=13 Score=32.53 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=53.5
Q ss_pred CCCeEEEECCCC-CHHH-HHHHHcCCCcEEEecCCCCCCc-------EEEecCCCCCCCCCchhHHHHH-HhhccccHHH
Q 025148 110 NESKALCIGARV-GQEV-EALKRVGVSDSVGIDLVPYPPL-------VIEGDFHRQPFDDETFDFEFSN-VFDHALYPDK 179 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~-~~l~~~~~~~v~gvD~s~~~~~-------~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~~~ 179 (257)
.+.+|+-+|+|. |... ..+...+..+|+.+|.++.... ....+..++.-.-...|+|++. .-.+. ..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~---~~ 253 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY---AK 253 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch---HH
Confidence 578999999964 3322 2223335568888998865110 0011111110001235776553 22222 23
Q ss_pred HHHHHHHhccCCcEEEEEeccCCCcCc----CCCCCcCChhHHHHhcc
Q 025148 180 FVMEIERTLKPGGVCVLHVALSKRADK----YSANDLFSVKPLVKLFK 223 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~~~~~~~~~~----y~~~~~~~~~~~~~~f~ 223 (257)
.+..+.+..+.+|.+++.....+..+. ...-.+|+.+++..+.+
T Consensus 254 ~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~ 301 (311)
T cd05213 254 IVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVE 301 (311)
T ss_pred HHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHH
Confidence 344443333336788887655443221 11225667777666544
No 382
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=46.67 E-value=11 Score=33.38 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=41.2
Q ss_pred CCCeEEEECCCC-CH-HHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHH--H-HhhccccHH----HH
Q 025148 110 NESKALCIGARV-GQ-EVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFS--N-VFDHALYPD----KF 180 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~--~-~l~h~~~~~----~~ 180 (257)
.|.+|.=||+|. |. ++..+...| .+|+++|.++.... .. ..+. .+.+-++. + ++.|++... .+
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G-~~V~~~d~~~~~~~----~~--~~~~-~~l~ell~~aDiVil~lP~t~~t~~li 216 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFG-ATITAYDAYPNKDL----DF--LTYK-DSVKEAIKDADIISLHVPANKESYHLF 216 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCChhHhh----hh--hhcc-CCHHHHHhcCCEEEEeCCCcHHHHHHH
Confidence 466889999986 33 233344445 49999998764211 00 0111 12333332 1 444444222 23
Q ss_pred HHHHHHhccCCcEEEE
Q 025148 181 VMEIERTLKPGGVCVL 196 (257)
Q Consensus 181 l~~~~r~LkpgG~l~i 196 (257)
-+++...+|+|.+++-
T Consensus 217 ~~~~l~~mk~gavlIN 232 (330)
T PRK12480 217 DKAMFDHVKKGAILVN 232 (330)
T ss_pred hHHHHhcCCCCcEEEE
Confidence 3667778888765443
No 383
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=46.61 E-value=43 Score=28.62 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
......+.. ....++.|||-=+|+|..+....+.+. ..+|+|++++
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~ 255 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPE 255 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHH
Confidence 444444444 667899999999999999998887765 8999998866
No 384
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=46.41 E-value=29 Score=30.70 Aligned_cols=86 Identities=12% Similarity=-0.018 Sum_probs=43.8
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcE----E----EecCCCC-CC--CCCchhHHHHHHhhcc
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLV----I----EGDFHRQ-PF--DDETFDFEFSNVFDHA 174 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~----~----~~d~~~~-~~--~~~~fD~V~~~~l~h~ 174 (257)
..+++.++|-+|+|. |..+..+++....++++++.+++.... . ..+..+. .+ ....+|+|+ +..
T Consensus 177 ~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vi----d~~ 252 (357)
T PLN02514 177 LKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYII----DTV 252 (357)
T ss_pred cCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEE----ECC
Confidence 346788898887653 444455555433478887765431100 0 0000000 00 001233332 222
Q ss_pred ccHHHHHHHHHHhccCCcEEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ...+....+.|++||.++..
T Consensus 253 g~-~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PV-FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred Cc-hHHHHHHHHHhccCCEEEEE
Confidence 11 24677788999999988764
No 385
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=46.09 E-value=84 Score=20.62 Aligned_cols=48 Identities=8% Similarity=-0.059 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecC
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDG 235 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~g 235 (257)
|.-..++..+-+++|+.+.+.+.... +...+.++.++.|+..+....+
T Consensus 12 Pvl~~kkal~~l~~G~~l~V~~d~~~-----------a~~di~~~~~~~G~~~~~~~~~ 59 (69)
T cd03420 12 PILKLKKEIDKLQDGEQLEVKASDPG-----------FARDAQAWCKSTGNTLISLETE 59 (69)
T ss_pred HHHHHHHHHHcCCCCCEEEEEECCcc-----------HHHHHHHHHHHcCCEEEEEEec
Confidence 44456777788899998888774332 5778899999999877654443
No 386
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=45.05 E-value=20 Score=30.99 Aligned_cols=119 Identities=17% Similarity=0.175 Sum_probs=69.7
Q ss_pred eEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCC---CCCCchhHHHHH----H------
Q 025148 113 KALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQP---FDDETFDFEFSN----V------ 170 (257)
Q Consensus 113 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~---~~~~~fD~V~~~----~------ 170 (257)
+++|+=||-|.+...+.+.|..-+.++|+++. . ....+|+.++. ++. .+|+++.. .
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTST
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEecccc
Confidence 78999999999999999988767899999976 3 77788888774 343 47876332 1
Q ss_pred hhccccHHH----HHHHHHHhccCCcEEEEE-eccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE-e--cCCCCc
Q 025148 171 FDHALYPDK----FVMEIERTLKPGGVCVLH-VALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK-V--DGFGLD 239 (257)
Q Consensus 171 l~h~~~~~~----~l~~~~r~LkpgG~l~i~-~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~-~--~gf~~~ 239 (257)
-....++.. .+-++.+.++|.- ++++ |+....... -.....+.+.|++.|+..... + ..||+-
T Consensus 80 ~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~ENV~~l~~~~~-----~~~~~~i~~~l~~lGY~v~~~vlna~~yGvP 150 (335)
T PF00145_consen 80 RKGFDDPRNSLFFEFLRIVKELKPKY-FLLENVPGLLSSKN-----GEVFKEILEELEELGYNVQWRVLNAADYGVP 150 (335)
T ss_dssp HHCCCCHTTSHHHHHHHHHHHHS-SE-EEEEEEGGGGTGGG-----HHHHHHHHHHHHHTTEEEEEEEEEGGGGTSS
T ss_pred ccccccccchhhHHHHHHHhhccceE-EEecccceeecccc-----ccccccccccccccceeehhccccHhhCCCC
Confidence 112223332 2344455678844 4444 443221100 012467778888888643222 2 367663
No 387
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=45.05 E-value=6.2 Score=34.43 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=31.4
Q ss_pred CCCCeEEEECCCCCHHHH-HHHHcCCCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVE-ALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~-~l~~~~~~~v~gvD~s~~ 144 (257)
-.+..|+|+=+|-|+++. .+...+...|+++|.+|.
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~ 229 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPW 229 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHH
Confidence 345789999999999998 777778889999999987
No 388
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=45.00 E-value=49 Score=27.96 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=25.7
Q ss_pred hcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCC
Q 025148 106 KLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..+.++..||-.||. .|..+..+++..+.+|++++.++.
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~ 175 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEE 175 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 345678899999983 344444455544457888877654
No 389
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=44.93 E-value=88 Score=20.51 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEE
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFR 245 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~ 245 (257)
|.-.++...+.+.+|+.+.+.+.+.. +...+.++.++.|+..+....+-+ ..+++.+
T Consensus 12 P~i~~k~~l~~l~~G~~l~V~~dd~~-----------s~~di~~~~~~~g~~~~~~~~~~~-~~~~~I~ 68 (69)
T cd03423 12 PVMMLHKKVRKMKPGDTLLVLATDPS-----------TTRDIPKFCTFLGHELLAQETEDE-PYRYLIR 68 (69)
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCCc-----------hHHHHHHHHHHcCCEEEEEEEcCC-EEEEEEE
Confidence 44455667778899998888764332 577899999999988765544433 2334444
No 390
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=44.72 E-value=63 Score=28.10 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=47.2
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCC---------CcEEE-ecCCCC------CCCCCchhHHHHH--Hh
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYP---------PLVIE-GDFHRQ------PFDDETFDFEFSN--VF 171 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~-~d~~~~------~~~~~~fD~V~~~--~l 171 (257)
++|+=+|||. |.++..|++.|. +|+.++-+.+. ..... +..... +-+.+.||+|+.. ..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 5789999986 445666666554 88888876421 11111 110111 1112468886442 33
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+ ..++++.+...+.++..++..
T Consensus 82 ~----~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 82 D----AEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred h----HHHHHHHHHhhCCCCCEEEEE
Confidence 2 447888899999998865543
No 391
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=44.01 E-value=86 Score=26.54 Aligned_cols=84 Identities=18% Similarity=0.110 Sum_probs=47.9
Q ss_pred cCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC--------CcEEEecCCCC-----CCCCCchhHHHHHHh
Q 025148 107 LLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP--------PLVIEGDFHRQ-----PFDDETFDFEFSNVF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~--------~~~~~~d~~~~-----~~~~~~fD~V~~~~l 171 (257)
.+.++.+||=.|+ +.|..+..+++..+.+|++++.+++. ...+..+-.+. .. .+.+|+++..
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~-- 215 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLEL-- 215 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEEC--
Confidence 3567889999987 34556666666544588888776541 11111110000 01 2335554432
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ...+.+..+.|+++|.++..
T Consensus 216 --~~--~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 216 --VG--TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred --CC--hHHHHHHHHHhccCCEEEEE
Confidence 11 14678888999999998754
No 392
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.54 E-value=21 Score=31.59 Aligned_cols=30 Identities=33% Similarity=0.364 Sum_probs=19.2
Q ss_pred CeEEEECCCCCHHH---HHHHHcCCCcEEEecCC
Q 025148 112 SKALCIGARVGQEV---EALKRVGVSDSVGIDLV 142 (257)
Q Consensus 112 ~~vLDiGcG~G~~~---~~l~~~~~~~v~gvD~s 142 (257)
.+||-||+| |.-. .-|+-.|..++..+|.+
T Consensus 41 ~kiLviGAG-GLGCElLKnLal~gF~~~~viDmD 73 (422)
T KOG2015|consen 41 CKILVIGAG-GLGCELLKNLALSGFRQLHVIDMD 73 (422)
T ss_pred CcEEEEccC-cccHHHHHhHHhhccceeEEEeec
Confidence 689999998 4333 33333466677777665
No 393
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=43.41 E-value=25 Score=29.32 Aligned_cols=35 Identities=9% Similarity=-0.071 Sum_probs=24.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~ 144 (257)
.+-++-|-.||+|+++..+.-. .-..|+|.|++++
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~ 88 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDED 88 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHH
Confidence 3458999999999998766532 2358999999966
No 394
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=43.04 E-value=39 Score=29.48 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=45.1
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHHcCCCc-EEEecCCCCCCc-------EEEecCCCCC--------CCCCchhHHHHHH
Q 025148 108 LSNESKALCIGAR-VGQEVEALKRVGVSD-SVGIDLVPYPPL-------VIEGDFHRQP--------FDDETFDFEFSNV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~~~-------~~~~d~~~~~--------~~~~~fD~V~~~~ 170 (257)
..++.+||-.|+| .|..+..+++..+.+ |++++-++.... ....+..... ...+.+|+|+..+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence 4567888877764 234444455543345 888866543110 0001111111 1123455554321
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ....+.++.+.|+++|.++...
T Consensus 239 g-----~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 239 G-----APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred C-----CHHHHHHHHHhhcCCCEEEEEc
Confidence 1 1356788899999999987653
No 395
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=41.94 E-value=1.4e+02 Score=24.94 Aligned_cols=84 Identities=18% Similarity=0.072 Sum_probs=45.1
Q ss_pred CCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCC-------C-CcEEEecCCCC--CCCCCchhHHHHHHhhccc
Q 025148 108 LSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPY-------P-PLVIEGDFHRQ--PFDDETFDFEFSNVFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~-------~-~~~~~~d~~~~--~~~~~~fD~V~~~~l~h~~ 175 (257)
+.++.+||=.|+. .|..+..+++....+++.++.++. . ..++.....+. ....+.+|+++.. ..
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~----~~ 217 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAANADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDT----VG 217 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecchhHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEEC----Cc
Confidence 5678899988872 344444555544457877765431 0 01111111111 0122346665432 11
Q ss_pred cHHHHHHHHHHhccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ..+....+.|+++|.++..
T Consensus 218 ~--~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 218 G--ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred h--HHHHHHHHHHhcCcEEEEE
Confidence 1 2667788899999998764
No 396
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=41.90 E-value=22 Score=32.92 Aligned_cols=88 Identities=15% Similarity=0.036 Sum_probs=50.3
Q ss_pred CCeEEEECCCCCHHHHHHHH--c-CCCcEEEecCCCCCC--------------c-EEEe-cCCC--CCCCC-CchhHHHH
Q 025148 111 ESKALCIGARVGQEVEALKR--V-GVSDSVGIDLVPYPP--------------L-VIEG-DFHR--QPFDD-ETFDFEFS 168 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~--~-~~~~v~gvD~s~~~~--------------~-~~~~-d~~~--~~~~~-~~fD~V~~ 168 (257)
.+.+.|+|.|.|.-.-.+.. . -...+..||.+.... . ++.. .+.+ +|... +.||+|+|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 45678888776654433333 2 234678888885510 0 1111 1111 23333 44999888
Q ss_pred -HHhhccccHHH---HH-HHHHHhccCCcEEEEEe
Q 025148 169 -NVFDHALYPDK---FV-MEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 -~~l~h~~~~~~---~l-~~~~r~LkpgG~l~i~~ 198 (257)
..++|+..... .. .-+.+..++||.+++.-
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEe
Confidence 58888875542 33 34556778898888875
No 397
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.53 E-value=2.1e+02 Score=25.11 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=25.6
Q ss_pred CCCeEEEECCCCC---HHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVG---QEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.|+.||-=|.|+| .++..+++++. .++-+|++..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~ 73 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQ 73 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEecccc
Confidence 5789999999987 34555666665 8888898876
No 398
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.47 E-value=98 Score=28.02 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=24.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEE---ecCC
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVG---IDLV 142 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g---vD~s 142 (257)
++...+|+|||.|.++.+++.. +..+++- +|-.
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~ 218 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRK 218 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeeccc
Confidence 3378999999999999999873 4445555 6654
No 399
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=40.75 E-value=28 Score=30.66 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+...+.++..+..+|+|||++++.+
T Consensus 217 L~~L~~~L~~a~~~L~~gGrl~VIS 241 (310)
T PF01795_consen 217 LEELERGLEAAPDLLKPGGRLVVIS 241 (310)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 3455688999999999999999987
No 400
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=40.72 E-value=1.4e+02 Score=26.77 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=24.9
Q ss_pred CeEEEECCCCCHH----HHHHHHc-CCCcEEEecCCCC
Q 025148 112 SKALCIGARVGQE----VEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~G~~----~~~l~~~-~~~~v~gvD~s~~ 144 (257)
-.++-.|.|||.. ++++.++ +..+|+++|....
T Consensus 213 vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S 250 (362)
T KOG1252|consen 213 VDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQES 250 (362)
T ss_pred CCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcc
Confidence 4677788888854 5677765 6789999998765
No 401
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=40.70 E-value=44 Score=33.16 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=54.5
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCC--------------------C----------cE-EEecCCCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYP--------------------P----------LV-IEGDFHRQPF 158 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~--------------------~----------~~-~~~d~~~~~~ 158 (257)
.+|-=||+|+ +.++..++..|. +|+-+|.+++. . .+ ...|.. .+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS--GF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH--Hh
Confidence 4688899986 344445555564 99999999761 0 00 011111 11
Q ss_pred CCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 159 DDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 159 ~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...|+|+=.+.|.+.--.++++++.++++|+.++.-.+
T Consensus 413 --~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNT 450 (737)
T TIGR02441 413 --KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNT 450 (737)
T ss_pred --ccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 23677777788877778889999999999998876554
No 402
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=40.55 E-value=38 Score=29.46 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=47.2
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHcCCCc-EEEecCCCCCCcEE-------EecCCCCC-------CCCCchhHHHHHH
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRVGVSD-SVGIDLVPYPPLVI-------EGDFHRQP-------FDDETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~~-------~~d~~~~~-------~~~~~fD~V~~~~ 170 (257)
.+.++.+||-.|+|. |..+..+++....+ +++++-++...... ..+..+.. .....+|+++..+
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~ 235 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA 235 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECC
Confidence 356788999998754 55555556643345 88887665421110 00111000 0111244443221
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.....+..+.+.|+++|.++...
T Consensus 236 -----g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 -----GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred -----CCHHHHHHHHHHhhcCCEEEEEc
Confidence 12356788899999999987653
No 403
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=40.39 E-value=71 Score=27.97 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=40.6
Q ss_pred CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHH--H-Hhhcccc---HHHHH-
Q 025148 110 NESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFS--N-VFDHALY---PDKFV- 181 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~--~-~l~h~~~---~~~~l- 181 (257)
.|.+|.=||.|. |.-...+++.-+.+|+++|.+..... ..+...++|-++. + +.-|++- -..++
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~--------~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN--------EEYERVSLEELLKTSDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc--------cCceeecHHHHhhcCCEEEEeCCCCchhhcccC
Confidence 567888899874 44333333323459999998642110 0111123443433 2 3344441 22233
Q ss_pred HHHHHhccCCcEEEE
Q 025148 182 MEIERTLKPGGVCVL 196 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i 196 (257)
++....+|||.+|+=
T Consensus 216 ~~~~~~Mk~~a~lIN 230 (311)
T PRK08410 216 YKELKLLKDGAILIN 230 (311)
T ss_pred HHHHHhCCCCeEEEE
Confidence 566677788766553
No 404
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=40.37 E-value=25 Score=26.83 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=16.3
Q ss_pred EECCCCC--HHHHHHH--Hc-CCCcEEEecCCCC
Q 025148 116 CIGARVG--QEVEALK--RV-GVSDSVGIDLVPY 144 (257)
Q Consensus 116 DiGcG~G--~~~~~l~--~~-~~~~v~gvD~s~~ 144 (257)
|||++.| .....+. .. +..+|+++|.++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~ 34 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPS 34 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHH
Confidence 8999999 5555443 22 4568999999876
No 405
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=40.02 E-value=19 Score=31.34 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=41.6
Q ss_pred CCCeEEEECCCCCHHHHHHH----HcCCCcEEEecCCCCCCc------EEEecCCCCCCCCCchhHHHHHHhhccccHHH
Q 025148 110 NESKALCIGARVGQEVEALK----RVGVSDSVGIDLVPYPPL------VIEGDFHRQPFDDETFDFEFSNVFDHALYPDK 179 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~----~~~~~~v~gvD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~~ 179 (257)
.+.+++=+|+|. .+..++ ..| ++|+.+|.++.... .......++.-.-..+|+|+..+ +. .-
T Consensus 151 ~g~kvlViG~G~--iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~----p~-~~ 222 (296)
T PRK08306 151 HGSNVLVLGFGR--TGMTLARTLKALG-ANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTI----PA-LV 222 (296)
T ss_pred CCCEEEEECCcH--HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECC----Ch-hh
Confidence 578999999975 333332 235 59999998864210 00011111110013467766532 11 11
Q ss_pred HHHHHHHhccCCcEEEE
Q 025148 180 FVMEIERTLKPGGVCVL 196 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i 196 (257)
.-+++.+.+++|++++-
T Consensus 223 i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 223 LTKEVLSKMPPEALIID 239 (296)
T ss_pred hhHHHHHcCCCCcEEEE
Confidence 23566678899876663
No 406
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.32 E-value=8.2 Score=33.26 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=21.4
Q ss_pred eEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC
Q 025148 113 KALCIGARV--GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 113 ~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
+|.=||+|. +.++..+++.+. +|+.+|.+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence 577788874 234445555565 8999999876
No 407
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.13 E-value=37 Score=29.65 Aligned_cols=138 Identities=13% Similarity=0.151 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCCC
Q 025148 96 AKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPF 158 (257)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~ 158 (257)
..++.+.+.......-..|+-+|||--.=+..+......+|+-+|.=+. ....+..|+.+..+
T Consensus 78 tr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw 157 (297)
T COG3315 78 TRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDW 157 (297)
T ss_pred HHHHHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccch
Confidence 3444444433332334789999999544444333322357777776432 24667777774432
Q ss_pred ----CCCchh-----HHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEeccCC--------C--cCcCC------CC
Q 025148 159 ----DDETFD-----FEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHVALSK--------R--ADKYS------AN 210 (257)
Q Consensus 159 ----~~~~fD-----~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~--------~--~~~y~------~~ 210 (257)
.+..|| ++++ +++.++.. ..+++..|.....||-.++....... . ..... ..
T Consensus 158 ~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 237 (297)
T COG3315 158 PQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGE 237 (297)
T ss_pred HHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccc
Confidence 233455 4455 47777663 34678999999999988888764110 0 01111 00
Q ss_pred ---CcCChhHHHHhcccCCcEEEEEe
Q 025148 211 ---DLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 211 ---~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
......++..++.+.|+......
T Consensus 238 ~~~~~~~~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 238 LVYFGDDPAEIETWLAERGWRSTLNR 263 (297)
T ss_pred ceeccCCHHHHHHHHHhcCEEEEecC
Confidence 11247889999999999887774
No 408
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=39.08 E-value=91 Score=27.10 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=44.6
Q ss_pred cCCCCCeEEEECCCCCHHHHH---HHHc-CCCcEEEecCCCCCC---------cEEEecCCCC------CCCCCchhHHH
Q 025148 107 LLSNESKALCIGARVGQEVEA---LKRV-GVSDSVGIDLVPYPP---------LVIEGDFHRQ------PFDDETFDFEF 167 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~---l~~~-~~~~v~gvD~s~~~~---------~~~~~d~~~~------~~~~~~fD~V~ 167 (257)
.+.++.+||=.|+ |..+.. +++. +..+++++|.++... .++...-.+. -.....+|+|+
T Consensus 163 ~~~~g~~vlI~g~--g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vl 240 (345)
T cd08286 163 KVKPGDTVAIVGA--GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVI 240 (345)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEE
Confidence 3567788877776 444443 4443 535788888765421 1111110000 00112355544
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ... ...+..+.+.|+++|.++..
T Consensus 241 d~----~g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 241 EA----VGI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred EC----CCC-HHHHHHHHHhccCCcEEEEe
Confidence 32 222 24678888999999998754
No 409
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=38.52 E-value=43 Score=30.19 Aligned_cols=88 Identities=19% Similarity=0.170 Sum_probs=50.2
Q ss_pred CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-----------------CCcEEEecCCCCC-CCCCchhHHHHH--
Q 025148 111 ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-----------------PPLVIEGDFHRQP-FDDETFDFEFSN-- 169 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~-~~~~~fD~V~~~-- 169 (257)
+.++||.+|+.+.....+++. +..+--|+|+..+ ...+..+|....+ +-...|+.+.+.
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~ 260 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF 260 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc
Confidence 458999999999999988874 3333344444422 1233334433332 122334444332
Q ss_pred ------------------------HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 ------------------------VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ------------------------~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+..|+.+-..++......++++|.+.+..
T Consensus 261 ~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e 313 (364)
T KOG1269|consen 261 EHLKLEKDLALKSSFPWNTPLTRDTITHWQDKSALFRGRVATLKPGGKVLILE 313 (364)
T ss_pred hhhhhcccccCCCccccccccchhheeecccccHHHHhHhhccCcCceEEehh
Confidence 22333333445677788889999888764
No 410
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=38.27 E-value=36 Score=29.90 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=22.5
Q ss_pred CCCeEEEECCCC-CHH-HHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARV-GQE-VEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~-~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+.+|.=||+|. |.- +..+...| .+|+++|.+..
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG-~~V~~~~~~~~ 170 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWG-FPLRCWSRSRK 170 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 467888899885 533 33333334 49999998654
No 411
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=37.98 E-value=21 Score=31.11 Aligned_cols=58 Identities=29% Similarity=0.397 Sum_probs=35.6
Q ss_pred CchhHHH-HHHhhccccHHHHHHHHHHhccCCcEEEEEeccCC------CcCcCCCCCcCChhHHHHhcccCCcEEE
Q 025148 161 ETFDFEF-SNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSK------RADKYSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 161 ~~fD~V~-~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~------~~~~y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
+-||+|+ ++..-|...|+ +.++++|||.|++++...- ....| ...+.++...+|+...
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F-------~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQEF-------VKKVKELAKAAGFKPV 285 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHHH-------HHHHHHHHHHCCCccc
Confidence 5699874 44454454454 7789999999999985210 01111 3456666777777644
No 412
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.98 E-value=45 Score=29.53 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=29.6
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHH-HH-cCCCcEEEecCCCC
Q 025148 105 KKLLSNESKALCIGARVGQEVEAL-KR-VGVSDSVGIDLVPY 144 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l-~~-~~~~~v~gvD~s~~ 144 (257)
...+++|+++.-+|+|.=.++... ++ .|..+++|||++++
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~ 228 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPD 228 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHH
Confidence 344588999999999964444333 33 47889999999987
No 413
>PLN02494 adenosylhomocysteinase
Probab=36.76 E-value=50 Score=30.88 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=45.9
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEEEec-CCCCCCCC--CchhHHHHHHhhccccHHHH-HH
Q 025148 108 LSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVIEGD-FHRQPFDD--ETFDFEFSNVFDHALYPDKF-VM 182 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d-~~~~~~~~--~~fD~V~~~~l~h~~~~~~~-l~ 182 (257)
.-.|++|+=+|+|. |......++.-..+|+++|.++........+ +...+..+ ...|+|+.. .....+ ..
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~t-----TGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTT-----TGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEEC-----CCCccchHH
Confidence 35688999999995 3333333332335899999887521100000 00011111 124554431 111233 37
Q ss_pred HHHHhccCCcEEEEEe
Q 025148 183 EIERTLKPGGVCVLHV 198 (257)
Q Consensus 183 ~~~r~LkpgG~l~i~~ 198 (257)
+....+|+||+++-.-
T Consensus 326 e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 326 DHMRKMKNNAIVCNIG 341 (477)
T ss_pred HHHhcCCCCCEEEEcC
Confidence 7888999999988754
No 414
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=36.51 E-value=26 Score=32.06 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=22.6
Q ss_pred CeEEEECCCCC--HHHHHHHHcCCCcEEEecCCCC
Q 025148 112 SKALCIGARVG--QEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~G--~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+|.=||.|.- ..+..|++.|. +|+++|.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHH
Confidence 46777888853 33444556665 9999999877
No 415
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=36.17 E-value=61 Score=30.83 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=44.5
Q ss_pred CeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC--------CCcEEEecCCCCC----CCCCchhHHHHHHhhcccc
Q 025148 112 SKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY--------PPLVIEGDFHRQP----FDDETFDFEFSNVFDHALY 176 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~--------~~~~~~~d~~~~~----~~~~~fD~V~~~~l~h~~~ 176 (257)
++++=+||| ..+..+++. .+.+++.+|.+++ ....+.+|..+.. ..-+..|.++..+-+..
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~-- 493 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGY-- 493 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChH--
Confidence 466777776 455444432 2348999999876 3557888877642 11134554432211110
Q ss_pred HHHHHHHHHHhccCCcEEEEEe
Q 025148 177 PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
....+-...|...|+..++..+
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEE
Confidence 1112333345567777777665
No 416
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=35.86 E-value=1.1e+02 Score=26.68 Aligned_cols=84 Identities=23% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC------CCcEEE--ecCC-------CCCCCCCchhHHHHHHhhc
Q 025148 111 ESKALCIGARV--GQEVEALKRVGVSDSVGIDLVPY------PPLVIE--GDFH-------RQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 111 ~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~------~~~~~~--~d~~-------~~~~~~~~fD~V~~~~l~h 173 (257)
..+|+=+|+|. |.++..|++.+ .+|+.+..++. ...+.. ++.. ..+-....+|+|+..+=.+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~ 83 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT 83 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence 35899999885 34555566555 37776665542 111110 1000 0000124588764431111
Q ss_pred cccHHHHHHHHHHhccCCcEEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+..++++.+...+++++.++..
T Consensus 84 --~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 84 --ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred --ChHhHHHHHhhhcCCCCEEEEe
Confidence 1346778888889999876543
No 417
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=35.59 E-value=1.4e+02 Score=20.29 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
|.-.+++..+.+++|+.+.+.+.+.. +...+..+.++.|...+....+-+ ...++.+|
T Consensus 22 Pll~~kk~l~~l~~G~~l~V~~dd~~-----------~~~di~~~~~~~G~~~~~~~~~~g-~~~~~I~k 79 (81)
T PRK00299 22 PVMMVRKTVRNMQPGETLLIIADDPA-----------TTRDIPSFCRFMDHELLAQETEQL-PYRYLIRK 79 (81)
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCcc-----------HHHHHHHHHHHcCCEEEEEEecCC-EEEEEEEE
Confidence 44556777788899999888764322 567888888888887765444333 23444444
No 418
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=35.33 E-value=1.1e+02 Score=26.71 Aligned_cols=85 Identities=19% Similarity=0.102 Sum_probs=43.7
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCCC-------CCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQPF-------DDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~~-------~~~~fD~V~~~~l 171 (257)
..++.+||-.|+|. |..+..+++. |...|+.++.++..... ...+..+..+ ..+.+|+++
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi---- 248 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVI---- 248 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEE----
Confidence 34678888887643 3444444554 44378888766542110 0011111110 001233332
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+... ....+.+..+.|+++|.++..
T Consensus 249 d~~g-~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 249 DFVN-NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred ECCC-CHHHHHHHHHHhhcCCeEEEE
Confidence 2111 135688899999999998864
No 419
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=35.33 E-value=27 Score=30.11 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=22.5
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+|.=||||. +.++..++..|. +|+.+|.+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHH
Confidence 4678889985 234455555565 8999999876
No 420
>PRK13243 glyoxylate reductase; Reviewed
Probab=35.01 E-value=94 Score=27.50 Aligned_cols=34 Identities=18% Similarity=0.030 Sum_probs=22.8
Q ss_pred CCCeEEEECCCC-CHH-HHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARV-GQE-VEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~-~~~l~~~~~~~v~gvD~s~~ 144 (257)
.|.+|.=||+|. |.. +..+...+ .+|+++|.++.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~ 184 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFG-MRILYYSRTRK 184 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-CEEEEECCCCC
Confidence 567999999986 433 33333334 59999998754
No 421
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=34.55 E-value=1.3e+02 Score=19.48 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
|--.+++..+.|.+|..+.+.+.... +...+..+.++.|+..+.....-+ ...++.+|
T Consensus 13 Pll~~~~~l~~l~~G~~l~v~~d~~~-----------~~~di~~~~~~~g~~~~~~~~~~~-~~~i~I~K 70 (70)
T PF01206_consen 13 PLLKAKKALKELPPGEVLEVLVDDPA-----------AVEDIPRWCEENGYEVVEVEEEGG-EYRILIRK 70 (70)
T ss_dssp HHHHHHHHHHTSGTT-EEEEEESSTT-----------HHHHHHHHHHHHTEEEEEEEESSS-SEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCcc-----------HHHHHHHHHHHCCCEEEEEEEeCC-EEEEEEEC
Confidence 44456677778889998888774332 567899999999986454433223 23444443
No 422
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=34.52 E-value=1.5e+02 Score=27.14 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.0
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q 025148 178 DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.+.+.+.++||+|-.+++..
T Consensus 108 ~~aa~sIa~~L~kG~LVIlES 128 (436)
T COG0677 108 ESAARSIAPVLKKGDLVILES 128 (436)
T ss_pred HHHHHHHHHhcCCCCEEEEec
Confidence 467789999999999999875
No 423
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=34.51 E-value=37 Score=29.28 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=48.7
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCCCc-------------EEEecCC---------CCCCC-----CCc
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYPPL-------------VIEGDFH---------RQPFD-----DET 162 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~-------------~~~~d~~---------~~~~~-----~~~ 162 (257)
.+|-=||+|+ +.++..++..|. +|+.+|.+++... ...+... .+... -..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhCC
Confidence 3788899984 344555555565 9999999977210 0111100 00000 023
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhc-cCCcEEEEEe
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTL-KPGGVCVLHV 198 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~L-kpgG~l~i~~ 198 (257)
.|+|+-.+.+...--..++.++.+.+ +|+.++.-.+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 45555555555555567788888888 6776665443
No 424
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=34.40 E-value=48 Score=32.78 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=52.4
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCCCc-------------EEEecCC---------CCC----CC-CCc
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYPPL-------------VIEGDFH---------RQP----FD-DET 162 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~-------------~~~~d~~---------~~~----~~-~~~ 162 (257)
.+|.=||+|+ ..++..++..|. +|+-+|.+++... +..+.+. .+. +. -..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcC
Confidence 4788999998 344455555564 9999999976100 0000000 000 00 123
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.|+|+=.+.|.+.--.++++++.++++|+.++.-.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT 428 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT 428 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 566665666666667789999999999997765543
No 425
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.38 E-value=37 Score=24.37 Aligned_cols=76 Identities=22% Similarity=0.139 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHc---CCCcEEEecCCCC--------CCcEEEecCCCCCC----CCCchhHHHHHHhhccccHHH--HH
Q 025148 119 ARVGQEVEALKRV---GVSDSVGIDLVPY--------PPLVIEGDFHRQPF----DDETFDFEFSNVFDHALYPDK--FV 181 (257)
Q Consensus 119 cG~G~~~~~l~~~---~~~~v~gvD~s~~--------~~~~~~~d~~~~~~----~~~~fD~V~~~~l~h~~~~~~--~l 181 (257)
||.|..+..+++. ...+|+.+|.+++ ...++.+|..+... .-+..|.|++. ..+... .+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~----~~~d~~n~~~ 79 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVIL----TDDDEENLLI 79 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEE----SSSHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEc----cCCHHHHHHH
Confidence 5666777777653 4348999999975 46777888765421 11223433221 112222 33
Q ss_pred HHHHHhccCCcEEEEEe
Q 025148 182 MEIERTLKPGGVCVLHV 198 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i~~ 198 (257)
....|.+.|...++..+
T Consensus 80 ~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 80 ALLARELNPDIRIIARV 96 (116)
T ss_dssp HHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHCCCCeEEEEE
Confidence 45567778888888877
No 426
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=34.24 E-value=2.1e+02 Score=28.08 Aligned_cols=84 Identities=19% Similarity=0.257 Sum_probs=44.0
Q ss_pred chhHHHHH--Hhhccc--cHHHHH-HHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 162 TFDFEFSN--VFDHAL--YPDKFV-MEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 162 ~fD~V~~~--~l~h~~--~~~~~l-~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
++|+|+++ |.+.-. .-+..+ ..+.+.|.++|.+++-+....-... . .--..-+.+.|.+..+.....-..+
T Consensus 415 ~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~-~---~~il~~lg~~F~~V~l~qT~~SSs~ 490 (675)
T PF14314_consen 415 SIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSP-D---YNILDLLGRYFKSVELVQTQFSSSF 490 (675)
T ss_pred cccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcc-h---hhHHHHHHhhcCceEEEECCCCCCC
Confidence 56777664 332211 223333 5666888999999997642211000 0 0012335556666655544444455
Q ss_pred CCceEEEEEcccc
Q 025148 237 GLDTEVVFRKNAK 249 (257)
Q Consensus 237 ~~~~~vv~~k~~~ 249 (257)
.-...+++++...
T Consensus 491 TSEVYlv~~~~~~ 503 (675)
T PF14314_consen 491 TSEVYLVFQKLKK 503 (675)
T ss_pred ceEEEEEEecccC
Confidence 5445677776554
No 427
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=33.86 E-value=1.2e+02 Score=25.85 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=44.7
Q ss_pred CCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCcEE-------EecCCCC------CCCCCchhHHHHHHhhc
Q 025148 109 SNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPLVI-------EGDFHRQ------PFDDETFDFEFSNVFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~~-------~~d~~~~------~~~~~~fD~V~~~~l~h 173 (257)
..+.+||=.|+. .|..+..+++.-+.+|+.++.+++..... ..+..+. ......+|+|+. .
T Consensus 145 ~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld----~ 220 (326)
T cd08289 145 PEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVD----P 220 (326)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEE----C
Confidence 346789999873 24444555554345888887765421110 0010100 011123444432 1
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.. ...+.+..+.|+++|.++...
T Consensus 221 ~g--~~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 221 VG--GKTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred Cc--HHHHHHHHHHhhcCCEEEEEe
Confidence 11 146778889999999987754
No 428
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=33.74 E-value=9.3 Score=34.43 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=22.5
Q ss_pred CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
++.+|+=+|+|. |..+...+..-..+|+.+|.++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~ 201 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINID 201 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 346799999873 44444444432348999998754
No 429
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=33.33 E-value=68 Score=30.95 Aligned_cols=81 Identities=11% Similarity=0.036 Sum_probs=46.1
Q ss_pred CeEEEECCCCCHHHHHHHH---cCCCcEEEecCCCC--------CCcEEEecCCCCCC----CCCchhHHHHHHhhcccc
Q 025148 112 SKALCIGARVGQEVEALKR---VGVSDSVGIDLVPY--------PPLVIEGDFHRQPF----DDETFDFEFSNVFDHALY 176 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~----~~~~fD~V~~~~l~h~~~ 176 (257)
.+|+=+|+| .++..+++ ....+++.+|.+++ ...++.+|..+... .-+..|.+++. ..|
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~----~~d 474 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVIT----CNE 474 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEE----eCC
Confidence 466666666 55544443 23349999999977 34577788776421 11234443332 112
Q ss_pred HHH--HHHHHHHhccCCcEEEEEe
Q 025148 177 PDK--FVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 177 ~~~--~l~~~~r~LkpgG~l~i~~ 198 (257)
++. .+-...|.+.|+..++..+
T Consensus 475 ~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 475 PEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEe
Confidence 222 2344556678888888876
No 430
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=33.00 E-value=1.4e+02 Score=26.16 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHH----HHHHHc-CCCcEEEecCCCC
Q 025148 82 TWTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEV----EALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 82 ~w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~----~~l~~~-~~~~v~gvD~s~~ 144 (257)
+-+..+|+.+.......+.... ...-..+=.|+|||... .+|.++ +..+++++|....
T Consensus 145 f~NpaN~~aH~~tT~~EI~~~~-----~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S 207 (300)
T COG0031 145 FENPANPEAHYETTGPEIWQQT-----DGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGS 207 (300)
T ss_pred cCCCccHHHHHhhhHHHHHHHh-----CCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCC
Confidence 3344566665544333222211 11245677788888654 455554 6689999998753
No 431
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=32.78 E-value=78 Score=28.79 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=22.9
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 025148 2 KATQSKSPIFKYFLISIFLTLPLLLLLLLFSL 33 (257)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (257)
+.|.+++-..+.+++|++|-+.++.++++++.
T Consensus 3 ~~~~~~~~~~~aiiiSv~LHvlLi~lLi~gs~ 34 (387)
T PRK09510 3 KATEQNDKLKRAIIISVVLHIILFALLIWSSF 34 (387)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677788899998888777766666553
No 432
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.62 E-value=25 Score=30.33 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=22.0
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+|.=||+|. +.++..++..+. +|+.+|.+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence 4678888885 234445555554 8999999865
No 433
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=32.45 E-value=1.7e+02 Score=24.93 Aligned_cols=87 Identities=14% Similarity=0.034 Sum_probs=46.6
Q ss_pred hcCCCCCeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCC--------CCCCchhHHHH
Q 025148 106 KLLSNESKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQP--------FDDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V~~ 168 (257)
..+.++.++|-.|++. |..+..++.....+++.++.++..... ...+..+.. .....+|+++.
T Consensus 162 ~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 241 (342)
T cd08266 162 ARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVE 241 (342)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEE
Confidence 4456788999998863 444444555444588888776541110 001111100 01123455443
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++- ...+.++.+.++++|.++...
T Consensus 242 ~~g------~~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 242 HVG------AATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCc------HHHHHHHHHHhhcCCEEEEEe
Confidence 211 135677788999999887653
No 434
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=32.20 E-value=38 Score=33.48 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=52.7
Q ss_pred eEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCCC-------------cEEEecC---------CCC----CCC-CCch
Q 025148 113 KALCIGARV--GQEVEALKRVGVSDSVGIDLVPYPP-------------LVIEGDF---------HRQ----PFD-DETF 163 (257)
Q Consensus 113 ~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~-------------~~~~~d~---------~~~----~~~-~~~f 163 (257)
+|-=||+|+ +.++..++..|. +|+-+|.+++.. ....+.+ ..+ .+. -...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 393 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNV 393 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCC
Confidence 688899986 344455555564 999999996610 0000000 000 000 1235
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+|+=.+.|.+.--.++++++.++++|+.+|.-.+
T Consensus 394 DlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT 428 (714)
T TIGR02437 394 DIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT 428 (714)
T ss_pred CEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 66666677777777889999999999998776544
No 435
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=32.07 E-value=1.5e+02 Score=31.59 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHhccCCcEEEEEec
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+|.++++.+...|+.+|.+++..-
T Consensus 1238 d~~~~le~~~~slre~GFLll~e~ 1261 (2376)
T KOG1202|consen 1238 DPAKALENCVASLREGGFLLLEEL 1261 (2376)
T ss_pred ChHHHHHHHHHHHhcCCeEEEEhh
Confidence 788999999999999999999864
No 436
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=31.55 E-value=97 Score=28.00 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=47.3
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCC--------CCcEEEecC-CCC-----C-CCCCchhHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPY--------PPLVIEGDF-HRQ-----P-FDDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~--------~~~~~~~d~-~~~-----~-~~~~~fD~V~~ 168 (257)
..+.++++||=.|+|. |..+..+++. +...++.+|.++. ....+...- .+. . .....+|+|+-
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 3456788888787754 4444455554 5434666777653 111111100 000 0 11123565533
Q ss_pred HHhhc---------cccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDH---------ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h---------~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+=.. ..++...+++..+.+++||.+++.
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 21100 012235789899999999998874
No 437
>PLN02740 Alcohol dehydrogenase-like
Probab=31.54 E-value=83 Score=28.09 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=27.6
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCC
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
...++++++||=+|||. |..+..+++. |..+|+++|.+++
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 34567889999999864 4444555554 4336999998865
No 438
>PRK06153 hypothetical protein; Provisional
Probab=31.32 E-value=62 Score=29.48 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=25.9
Q ss_pred CCCeEEEECCCC-CH-HHHHHHHcCCCcEEEecCC
Q 025148 110 NESKALCIGARV-GQ-EVEALKRVGVSDSVGIDLV 142 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s 142 (257)
.+.+|+=||||. |. .+..|++.|..+++.+|.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 357999999974 44 4566777888899999976
No 439
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=31.17 E-value=68 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=20.1
Q ss_pred CCCeEEEE--CCC-CCHHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCI--GAR-VGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDi--GcG-~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+.++|=+ |+| .|..+..+++....++++++.++.
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~ 179 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKE 179 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 44555554 433 244455556654458999887754
No 440
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=31.01 E-value=1.4e+02 Score=28.96 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=46.9
Q ss_pred CCeEEEECCCC-CHHHH-HHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCC----CCCchhHHHHHHhhcccc
Q 025148 111 ESKALCIGARV-GQEVE-ALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPF----DDETFDFEFSNVFDHALY 176 (257)
Q Consensus 111 ~~~vLDiGcG~-G~~~~-~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~----~~~~fD~V~~~~l~h~~~ 176 (257)
..+|+=+|||. |.... .|.+.+ .+++.+|.+++ ...++.+|..+... .-+..|++++.+ .|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~----~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI----DD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe----CC
Confidence 35788888885 44332 233334 48999999977 35577888776531 112345543321 22
Q ss_pred HHH--HHHHHHHhccCCcEEEEEe
Q 025148 177 PDK--FVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 177 ~~~--~l~~~~r~LkpgG~l~i~~ 198 (257)
++. .+-...|.+.|+-.++...
T Consensus 475 ~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 475 PQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEE
Confidence 222 2334556667777666655
No 441
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=30.79 E-value=83 Score=27.35 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=44.5
Q ss_pred CCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCC--------CCCCchhHHHHHHh
Q 025148 109 SNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQP--------FDDETFDFEFSNVF 171 (257)
Q Consensus 109 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V~~~~l 171 (257)
.++.+||-.|+|. |..+..+++. +...|++++.++....+ ...+..+.. ...+.+|+|+..
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~-- 239 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEM-- 239 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEEC--
Confidence 4677888877653 4444555554 43357888765542110 011111110 011224443321
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.. ....+..+.+.|+++|.++...
T Consensus 240 --~g-~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 240 --SG-APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred --CC-CHHHHHHHHHHHhcCCEEEEEe
Confidence 11 1357788899999999988764
No 442
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.63 E-value=44 Score=29.30 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=36.6
Q ss_pred EEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCC-CchhHH
Q 025148 114 ALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDD-ETFDFE 166 (257)
Q Consensus 114 vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~-~~fD~V 166 (257)
|+|+-||-|.+..-+.+.|..-+.++|+++. .-.+..+|+.++...+ ..+|++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl 63 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDIL 63 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEE
Confidence 5899999999999998877645678999865 1134556776654211 236776
No 443
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=30.07 E-value=68 Score=31.67 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=52.7
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCCCc-------------EEEecC---------CCCCC-----CCCc
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYPPL-------------VIEGDF---------HRQPF-----DDET 162 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~-------------~~~~d~---------~~~~~-----~~~~ 162 (257)
.+|.=||+|+ ..++..++...+.+|+.+|.+++... ...+.+ ..+.+ .-..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 389 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKH 389 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhcc
Confidence 5789999998 34455556333359999999866100 000000 00000 0123
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.|+|+=.+.|.+.--.++++++.++++|+.++.-.+
T Consensus 390 aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 390 ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 566665667766667789999999999998776544
No 444
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=30.06 E-value=1.6e+02 Score=27.40 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHhccCCcEEEEEe
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+..+.+.++.+.++..|.+++..
T Consensus 196 ~i~~~F~~f~~~vp~~G~~v~~~ 218 (459)
T COG0773 196 AIKQAFHHFVRNVPFYGRAVVCG 218 (459)
T ss_pred HHHHHHHHHHHhCCccceEEEEC
Confidence 34567788889999999988865
No 445
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=29.81 E-value=1e+02 Score=27.34 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=28.0
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCC
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
...++++++||=.|||. |..+..+++. +..+|+++|.+++
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~ 221 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPA 221 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 34567889999999864 4455556664 4337999998765
No 446
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=28.86 E-value=65 Score=27.87 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=40.8
Q ss_pred CeEEEECCCC--CHHHHHHHHcCC-CcEEEecCCCCCCcE----EEecC--CCC-CCCCCchhHHH-HHHhhccccHHHH
Q 025148 112 SKALCIGARV--GQEVEALKRVGV-SDSVGIDLVPYPPLV----IEGDF--HRQ-PFDDETFDFEF-SNVFDHALYPDKF 180 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~-~~v~gvD~s~~~~~~----~~~d~--~~~-~~~~~~fD~V~-~~~l~h~~~~~~~ 180 (257)
.+|+=+|.|- |.++..+.+.+. ..++|.|.+...... -..|- .+. -......|+|+ |-=+. .-.++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~---~~~~~ 80 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE---ATEEV 80 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH---HHHHH
Confidence 5778888774 455666666553 357888887641110 00010 111 11223468753 32010 12266
Q ss_pred HHHHHHhccCCcEEE
Q 025148 181 VMEIERTLKPGGVCV 195 (257)
Q Consensus 181 l~~~~r~LkpgG~l~ 195 (257)
++++...||+|..+.
T Consensus 81 l~~l~~~l~~g~iv~ 95 (279)
T COG0287 81 LKELAPHLKKGAIVT 95 (279)
T ss_pred HHHhcccCCCCCEEE
Confidence 777777777765543
No 447
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=28.80 E-value=34 Score=29.69 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=22.4
Q ss_pred CeEEEECCCC--CHHHHHHHHcCC-CcEEEecCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGV-SDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~-~~v~gvD~s~~ 144 (257)
.+|.=||+|. +.++..+.+.+. .+|+++|.++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~ 42 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE 42 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 5788899886 334445555453 37999998865
No 448
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=28.68 E-value=93 Score=26.93 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=45.7
Q ss_pred cCCCCCeEEEECCC-CCHHHHHHHHcCCCc-EEEecCCCCCCcEE-------EecCCCCC--------CCCCchhHHHHH
Q 025148 107 LLSNESKALCIGAR-VGQEVEALKRVGVSD-SVGIDLVPYPPLVI-------EGDFHRQP--------FDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~~~~~-------~~d~~~~~--------~~~~~fD~V~~~ 169 (257)
.+.++.+||=.|+| .|..+..+++....+ +++++.++...... ..+..+.. ..+..+|+|+..
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~ 241 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVA 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEEC
Confidence 45778888888864 344444555543346 88877665421100 00110000 111224444321
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+- -...+..+.+.|+++|.++...
T Consensus 242 ~~-----~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 242 TG-----SPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CC-----ChHHHHHHHHHhhcCCEEEEEe
Confidence 11 1246778889999999988643
No 449
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=28.53 E-value=64 Score=30.23 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=45.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH---cCCCcEEEecCCCCCCcEEEec-CCCCCCC--CCchhHHHHHHhhccccHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKR---VGVSDSVGIDLVPYPPLVIEGD-FHRQPFD--DETFDFEFSNVFDHALYPDKFV 181 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~~~~d-~~~~~~~--~~~fD~V~~~~l~h~~~~~~~l 181 (257)
.-.|.+|+=+|+|. ++..+++ .-..+|+.+|.++........+ +...+++ -...|+|+.. ... ..++
T Consensus 251 ~LaGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~a----tGt-~~iI 323 (476)
T PTZ00075 251 MIAGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTA----TGN-KDII 323 (476)
T ss_pred CcCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEEC----CCc-cccc
Confidence 35688999999996 4444433 2335899998876522100000 1001111 0234555432 222 2344
Q ss_pred -HHHHHhccCCcEEEEEe
Q 025148 182 -MEIERTLKPGGVCVLHV 198 (257)
Q Consensus 182 -~~~~r~LkpgG~l~i~~ 198 (257)
.+....+|||++++-..
T Consensus 324 ~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 324 TLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred CHHHHhccCCCcEEEEcC
Confidence 47888899999988653
No 450
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=28.50 E-value=74 Score=25.87 Aligned_cols=33 Identities=33% Similarity=0.254 Sum_probs=25.0
Q ss_pred CCCeEEEECCCC-C-HHHHHHHHcCCCcEEEecCC
Q 025148 110 NESKALCIGARV-G-QEVEALKRVGVSDSVGIDLV 142 (257)
Q Consensus 110 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s 142 (257)
.+.+||=+|||. | ..+..|+..|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 357999999994 3 34556666787899999976
No 451
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=28.14 E-value=68 Score=31.27 Aligned_cols=34 Identities=26% Similarity=0.225 Sum_probs=26.9
Q ss_pred CCCeEEEECCCC-CH-HHHHHHHcCCCcEEEecCCC
Q 025148 110 NESKALCIGARV-GQ-EVEALKRVGVSDSVGIDLVP 143 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s~ 143 (257)
.+.+||=+|||+ |. .+..|+..|.++++-+|.+.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 357999999997 54 56677778988999999763
No 452
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=28.12 E-value=1.6e+02 Score=24.63 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=46.8
Q ss_pred hcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCc---------EEEecCCCC-----C-CCCCchhHHHH
Q 025148 106 KLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPL---------VIEGDFHRQ-----P-FDDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~---------~~~~d~~~~-----~-~~~~~fD~V~~ 168 (257)
..+.++.+||=.|+ +.|..+..+++....++++++.++.... ++..+-... . .....+|+++.
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~ 211 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYD 211 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEE
Confidence 44567889999995 3455555566654458888876654211 111100000 0 01123444432
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.... ..+....+.|+++|.++..
T Consensus 212 ----~~~~--~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 212 ----GVGK--DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred ----CCCc--HhHHHHHHhhccCcEEEEE
Confidence 1222 4667788999999998854
No 453
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=28.06 E-value=77 Score=27.82 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=28.3
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCC
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..++++.+||=+|||. |..+..+++....+|+++|.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~ 201 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE 201 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 3457789999999965 55556666653448999998765
No 454
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=28.00 E-value=43 Score=28.82 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=21.9
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+|-=||+|. ..++..++..+ .+|+.+|.++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHH
Confidence 4677788884 24444555555 49999999875
No 455
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.90 E-value=30 Score=30.59 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=23.1
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+|-=||+|+ ..++..++..|. +|+..|.+++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence 5788899984 344455555565 9999999876
No 456
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=27.83 E-value=35 Score=29.21 Aligned_cols=81 Identities=17% Similarity=0.120 Sum_probs=41.4
Q ss_pred eEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCCC--------CcEEEecCC----CC--CCCCCchhHHHHHHhhcccc
Q 025148 113 KALCIGARV-G-QEVEALKRVGVSDSVGIDLVPYP--------PLVIEGDFH----RQ--PFDDETFDFEFSNVFDHALY 176 (257)
Q Consensus 113 ~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~--------~~~~~~d~~----~~--~~~~~~fD~V~~~~l~h~~~ 176 (257)
+|+=+|+|. | .++..|++.+. +|+.+|.+++. ..+..++.. .. +-+.+.+|+|+..+=. .+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~--~~ 78 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKA--YQ 78 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccc--cc
Confidence 678889875 2 33444555554 89988875441 111001100 00 0011457775443111 12
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q 025148 177 PDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i 196 (257)
...+++.+...+.++..++.
T Consensus 79 ~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 79 LPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred HHHHHHHHhhhcCCCCEEEE
Confidence 45678888888877766554
No 457
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=27.78 E-value=2.1e+02 Score=24.06 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=45.8
Q ss_pred CCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCc--------EEEecCCCCCCCCCchhHHHHHHhhccccHHH
Q 025148 110 NESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPL--------VIEGDFHRQPFDDETFDFEFSNVFDHALYPDK 179 (257)
Q Consensus 110 ~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~--------~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~~ 179 (257)
++..+|=.|++ .|..+..+++....++++++.+++... ....+..+ +.++.+|+++..+-. .
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~vl~~~g~------~ 203 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSE--LSGAPVDLVVDSVGG------P 203 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecccc--ccCCCceEEEECCCc------H
Confidence 48899988884 344444455543458888876544111 11111111 122357776543211 3
Q ss_pred HHHHHHHhccCCcEEEEE
Q 025148 180 FVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~ 197 (257)
.+.+..+.|+++|.++..
T Consensus 204 ~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 204 QLARALELLAPGGTVVSV 221 (305)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 577889999999998864
No 458
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.70 E-value=38 Score=29.10 Aligned_cols=32 Identities=22% Similarity=0.087 Sum_probs=21.4
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+|.=||+|. +.++..+++.+. +|+.+|.+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHH
Confidence 3677888875 233444455554 8999999865
No 459
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=26.91 E-value=68 Score=27.94 Aligned_cols=86 Identities=15% Similarity=0.090 Sum_probs=48.9
Q ss_pred CCCeEEEECCCCCHHHHHHHH--cCCCcEEEecCCCC---------------CCcEEEecCCCCCCCC---CchhHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKR--VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDD---ETFDFEFSN 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~---~~fD~V~~~ 169 (257)
.|..|+-+| -.-..+.+++- .+ .+|..+|+++. ++..+.-|+.+ |+|+ +.||+.+.+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mp-k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMP-KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCC-ceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecC
Confidence 355799998 33333433333 34 38899999866 35666666665 4443 578887665
Q ss_pred HhhccccHHHHHHHHHHhccCC---cEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPG---GVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~Lkpg---G~l~i~~ 198 (257)
--+-+.-...++..=...||-- |++-++.
T Consensus 229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 229 PPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred chhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 3222333334444444556654 6777754
No 460
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=26.80 E-value=1.1e+02 Score=26.62 Aligned_cols=87 Identities=11% Similarity=-0.054 Sum_probs=46.1
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEE-------EecCCCCCCC-----CCchhHHHHHHhhc
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVI-------EGDFHRQPFD-----DETFDFEFSNVFDH 173 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~-------~~d~~~~~~~-----~~~fD~V~~~~l~h 173 (257)
.+..+.+||=.|||. |..+..+++....+++.++.++....+. ..+..+..+. ...+|+++. .
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~----~ 235 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILA----T 235 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEE----C
Confidence 456788999999643 3334444554334899998876421110 0011110000 012344332 1
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.. ....+.+..+.|+++|.++...
T Consensus 236 ~g-~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 236 AP-NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CC-chHHHHHHHHHcccCCEEEEEe
Confidence 11 1357788899999999988653
No 461
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=26.74 E-value=44 Score=28.91 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=26.2
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCC
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
..++++.+||=.|||. |..+..+++. ...++++++-+++
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~ 198 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDD 198 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChH
Confidence 3467888999999643 4444555553 3458999987765
No 462
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=26.51 E-value=2.5e+02 Score=20.24 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=31.2
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
...-+..+++++.+.|+||...++...... +.+.+.+.+++.+-.
T Consensus 37 d~gI~d~~~~ev~~~L~~GssAl~~lv~~~-----------~~d~v~~~l~~~gg~ 81 (102)
T PF06897_consen 37 DYGIDDEFIKEVGEALKPGSSALFLLVDEA-----------TEDKVDAALRKFGGK 81 (102)
T ss_pred hCCCCHHHHHHHHhhcCCCceEEEEEeccC-----------CHHHHHHHHHhcCCE
Confidence 334456799999999999988777654322 456667777776643
No 463
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=26.29 E-value=38 Score=27.05 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=23.9
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.|+|+=.+.|.+.--.++++++.+.+.|+-.+.-.+
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 466655566666666789999999999998877655
No 464
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=26.27 E-value=2.6e+02 Score=23.80 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=45.8
Q ss_pred hcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCC---------CCCCchhHHH
Q 025148 106 KLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQP---------FDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~---------~~~~~fD~V~ 167 (257)
..+.++.+||=.|+ +.|..+..+++..+.+++.++-+++.... ...+....+ .....+|+++
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 215 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVL 215 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEE
Confidence 34567889998885 34566666666433466656655431110 000111000 0122345444
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
..+ . ...+..+.+.|+++|.++..
T Consensus 216 ~~~----~--~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 216 DCV----G--GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred ECC----c--hHHHHHHHHHhccCCeEEEE
Confidence 321 1 25778889999999998764
No 465
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=26.15 E-value=1.7e+02 Score=25.48 Aligned_cols=87 Identities=17% Similarity=0.076 Sum_probs=45.2
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEE-------EecCCCCCC--------CCCchhHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVI-------EGDFHRQPF--------DDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~-------~~d~~~~~~--------~~~~fD~V~~ 168 (257)
..+.++.+||=.|+|. |..+..+++. +...|++++.+++..... ..+..+..+ ..+.+|+|+-
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid 247 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFD 247 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEE
Confidence 3456788898888642 3333444444 433788888765421110 011111100 1112444332
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. .. ....++++.+.|+++|.++..
T Consensus 248 ~----~g-~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 248 C----AG-VQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred C----CC-CHHHHHHHHHhccCCCEEEEE
Confidence 1 11 124678889999999998765
No 466
>PRK08818 prephenate dehydrogenase; Provisional
Probab=26.12 E-value=81 Score=28.50 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=21.3
Q ss_pred CCeEEEECC-CC--CHHHHHHHHcCCCcEEEecCC
Q 025148 111 ESKALCIGA-RV--GQEVEALKRVGVSDSVGIDLV 142 (257)
Q Consensus 111 ~~~vLDiGc-G~--G~~~~~l~~~~~~~v~gvD~s 142 (257)
..+|.=||. |- |.++..+.+....+|+|+|.+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~ 38 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA 38 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 357888997 53 455555554434589999975
No 467
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=26.05 E-value=98 Score=25.67 Aligned_cols=42 Identities=31% Similarity=0.295 Sum_probs=26.7
Q ss_pred eEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCC
Q 025148 113 KALCIGARV-G-QEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHR 155 (257)
Q Consensus 113 ~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~ 155 (257)
+++=+|||. | ..+..|.+.|. +|+.+|.+++ ....+++|..+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~ 55 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTHVVIGDATD 55 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceEEEEecCCC
Confidence 577788885 2 23344445565 9999999866 23455666554
No 468
>PRK06932 glycerate dehydrogenase; Provisional
Probab=25.99 E-value=2.8e+02 Score=24.30 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=41.2
Q ss_pred CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHH--H-Hhhcccc---HHHHH-
Q 025148 110 NESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFS--N-VFDHALY---PDKFV- 181 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~--~-~l~h~~~---~~~~l- 181 (257)
.|.+|.=||.|. |.-...+++.-+.+|+++|...... . ...+ .++|-++. + +.-|++- -..++
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~--~-----~~~~--~~l~ell~~sDiv~l~~Plt~~T~~li~ 216 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV--C-----REGY--TPFEEVLKQADIVTLHCPLTETTQNLIN 216 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc--c-----cccc--CCHHHHHHhCCEEEEcCCCChHHhcccC
Confidence 467899999985 4433333333345999998643210 0 0111 23554444 2 4445542 22233
Q ss_pred HHHHHhccCCcEEEE
Q 025148 182 MEIERTLKPGGVCVL 196 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i 196 (257)
++....+|||.+|+=
T Consensus 217 ~~~l~~mk~ga~lIN 231 (314)
T PRK06932 217 AETLALMKPTAFLIN 231 (314)
T ss_pred HHHHHhCCCCeEEEE
Confidence 566777888776553
No 469
>PRK08328 hypothetical protein; Provisional
Probab=25.76 E-value=81 Score=26.27 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=25.2
Q ss_pred CCeEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCC
Q 025148 111 ESKALCIGARV-G-QEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 111 ~~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
+.+|+=+|||. | ..+..|+..|.++++-+|.+..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 57899999993 4 3455666678889999987643
No 470
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=25.68 E-value=3e+02 Score=20.84 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+....+-.+.+.|..+|.+.+.+|-..+. ...++.++...-...|+.......
T Consensus 59 DL~D~LvDa~~~L~d~G~IWvltPK~gr~------g~V~~~~I~eaA~taGL~~t~~~~ 111 (127)
T PF11253_consen 59 DLVDALVDARTNLADDGVIWVLTPKAGRP------GHVEPSDIREAAPTAGLVQTKSCA 111 (127)
T ss_pred hHHHHHHHHHhhhcCCCEEEEEccCCCCC------CCCCHHHHHHHHhhcCCeeeeeec
Confidence 34467777889999999999999865432 233678899999999998877765
No 471
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=25.65 E-value=39 Score=29.50 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=34.0
Q ss_pred EEECCCCCHHHHHHHHc----CCCcEEEecCCCC----------------CCcE----EEecCCCC-----CCCCCchhH
Q 025148 115 LCIGARVGQEVEALKRV----GVSDSVGIDLVPY----------------PPLV----IEGDFHRQ-----PFDDETFDF 165 (257)
Q Consensus 115 LDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~----------------~~~~----~~~d~~~~-----~~~~~~fD~ 165 (257)
|=-|. +|.++..|.++ +..+++.+|.++. .+.+ +.+|+.+- -+.....|+
T Consensus 2 LVTGa-~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 2 LVTGA-GGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEETT-TSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred EEEcc-ccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 34454 48888887764 3458999999965 1222 24555543 144456788
Q ss_pred HHH-HHhhccc----cHHHHH
Q 025148 166 EFS-NVFDHAL----YPDKFV 181 (257)
Q Consensus 166 V~~-~~l~h~~----~~~~~l 181 (257)
|+. ..+-|++ +|.+++
T Consensus 81 VfHaAA~KhVpl~E~~p~eav 101 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAV 101 (293)
T ss_dssp EEE------HHHHCCCHHHHH
T ss_pred EEEChhcCCCChHHhCHHHHH
Confidence 766 4777775 676665
No 472
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=25.57 E-value=2.6e+02 Score=24.05 Aligned_cols=84 Identities=14% Similarity=0.055 Sum_probs=44.5
Q ss_pred cCCCCCeEEEECCCCCHHHHH---HHHc-CCCcEEEecCCCCCCcEE-------EecCCCC------C-CCCCchhHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEA---LKRV-GVSDSVGIDLVPYPPLVI-------EGDFHRQ------P-FDDETFDFEFS 168 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~---l~~~-~~~~v~gvD~s~~~~~~~-------~~d~~~~------~-~~~~~fD~V~~ 168 (257)
.+.++.+||=.|+|. .+.. +++. +..+|++++-+++..... ..+..+. . .+...+|+|+.
T Consensus 164 ~~~~~~~vlI~g~~~--vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld 241 (340)
T cd05284 164 YLDPGSTVVVIGVGG--LGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVID 241 (340)
T ss_pred cCCCCCEEEEEcCcH--HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEE
Confidence 356788999999653 4444 3443 435888887765421110 0010100 0 01112444332
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ... ...+++..+.|+++|.++..
T Consensus 242 ~----~g~-~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 242 F----VGS-DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred c----CCC-HHHHHHHHHHhhcCCEEEEE
Confidence 1 111 35678888999999998864
No 473
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=25.51 E-value=1.4e+02 Score=26.64 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=46.5
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCC--------CcEEEecCCCC---C--------CCCCchh
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYP--------PLVIEGDFHRQ---P--------FDDETFD 164 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~--------~~~~~~d~~~~---~--------~~~~~fD 164 (257)
..++++.+||=.|||. |..+..+++. |...|++++.++.. +..+ .+..+. . .....+|
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~-v~~~~~~~~~~~~~v~~~~~g~gvD 277 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYV-FNPTKMRDCLSGEKVMEVTKGWGAD 277 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEE-EcccccccccHHHHHHHhcCCCCCC
Confidence 3457788888887643 2333334443 43368998876541 1111 111110 0 0112344
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+. ....+...+.++.+.|+++|.++..
T Consensus 278 vvld----~~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 278 IQVE----AAGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred EEEE----CCCCcHHHHHHHHHHHHcCCEEEEE
Confidence 4432 2223345788889999999998864
No 474
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=25.28 E-value=75 Score=27.62 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=44.0
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEE-------EecCCCCCC---CCCchhHHHHHHhhcccc
Q 025148 108 LSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVI-------EGDFHRQPF---DDETFDFEFSNVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~-------~~d~~~~~~---~~~~fD~V~~~~l~h~~~ 176 (257)
+.++.++|=.|||. |..+..+++....++++++.+++..... ..+...... ..+.+|+|+. ....
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~----~~g~ 242 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIID----TVSA 242 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEE----CCCC
Confidence 46777777777642 3333344443334888888775421110 001111000 1233555542 2211
Q ss_pred HHHHHHHHHHhccCCcEEEEE
Q 025148 177 PDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ..+.++.+.|+++|.++..
T Consensus 243 ~-~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 243 S-HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred c-chHHHHHHHhcCCCEEEEE
Confidence 1 2467788999999988865
No 475
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=25.23 E-value=1.4e+02 Score=25.91 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=43.0
Q ss_pred cCCCCCeEEEECCCCCHHHHH---HHHc-CCCcEEEecCCCCCC--------cEEEecCCCC------CCCCCchhHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEA---LKRV-GVSDSVGIDLVPYPP--------LVIEGDFHRQ------PFDDETFDFEFS 168 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~---l~~~-~~~~v~gvD~s~~~~--------~~~~~d~~~~------~~~~~~fD~V~~ 168 (257)
...++.+||=.|+ |.++.. +++. +..++++++.+++.. ..+..+-.+. -.+.+.+|+++.
T Consensus 164 ~~~~~~~vlI~g~--g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid 241 (344)
T cd08284 164 QVRPGDTVAVIGC--GPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLE 241 (344)
T ss_pred CCccCCEEEEECC--cHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEE
Confidence 3466788888875 445444 4443 433788886654311 1111110000 001123444432
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ... ...+.+..+.|+++|.++..
T Consensus 242 ~----~~~-~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 242 A----VGG-AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred C----CCC-HHHHHHHHHhcccCCEEEEE
Confidence 1 111 24678888999999997764
No 476
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=25.01 E-value=2e+02 Score=25.32 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=45.6
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEecCCCCC-------CCCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGDFHRQP-------FDDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d~~~~~-------~~~~~fD~V 166 (257)
...+.++.+||=.|+|. |..+..+++. |...+++++.++... .++...-.+.. ...+.+|+|
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~v 257 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYA 257 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEE
Confidence 34457788888887643 3333444453 543588888665411 11111000000 001224443
Q ss_pred HHHHhhccccHHHHHHHHHHhcc-CCcEEEEEe
Q 025148 167 FSNVFDHALYPDKFVMEIERTLK-PGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lk-pgG~l~i~~ 198 (257)
+. .... ...+....+.|+ ++|.++...
T Consensus 258 id----~~g~-~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 258 FE----VIGS-ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred EE----CCCC-HHHHHHHHHHhccCCCEEEEEe
Confidence 32 2111 357788889999 999988653
No 477
>PRK06487 glycerate dehydrogenase; Provisional
Probab=24.66 E-value=2.6e+02 Score=24.55 Aligned_cols=33 Identities=15% Similarity=-0.037 Sum_probs=21.3
Q ss_pred CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCC
Q 025148 110 NESKALCIGARV-GQEVEALKRVGVSDSVGIDLV 142 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s 142 (257)
.|.+|.=+|+|. |.-....++.-+.+|+++|..
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~ 180 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP 180 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence 467889999975 443333333234599999975
No 478
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=24.61 E-value=1.6e+02 Score=27.08 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=46.9
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCC-CCCC--CCchhHHHHHHhhccccHHHHHH-
Q 025148 108 LSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHR-QPFD--DETFDFEFSNVFDHALYPDKFVM- 182 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~-~~~~--~~~fD~V~~~~l~h~~~~~~~l~- 182 (257)
...|++|+=+|+|. |......++.-..+|+++|.++........+... .+.. -...|+|++. .....++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVIta-----TG~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITA-----TGNKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEEC-----CCCHHHHHH
Confidence 45788999999997 4444444443345899999887521100000000 0100 0124554432 11234554
Q ss_pred HHHHhccCCcEEEEEe
Q 025148 183 EIERTLKPGGVCVLHV 198 (257)
Q Consensus 183 ~~~r~LkpgG~l~i~~ 198 (257)
+....+|+|++++...
T Consensus 267 ~~~~~mK~GailiN~G 282 (406)
T TIGR00936 267 EHFENMKDGAIVANIG 282 (406)
T ss_pred HHHhcCCCCcEEEEEC
Confidence 5778999999888754
No 479
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.42 E-value=17 Score=31.61 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=22.0
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+|.=||+|. +.++..+++.+. +|+.+|.+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH
Confidence 4678889885 334455555554 8999998765
No 480
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=24.41 E-value=79 Score=28.20 Aligned_cols=107 Identities=11% Similarity=0.023 Sum_probs=51.2
Q ss_pred CCCeEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHHH-----HhhccccHHHHHH
Q 025148 110 NESKALCIGARV-G-QEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSN-----VFDHALYPDKFVM 182 (257)
Q Consensus 110 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~-----~l~h~~~~~~~l~ 182 (257)
.+.+||=||.|. | ..+..|.+.|..+++-+.-+.....+-......+.+. +.+|+|++. .-+.+-..+ .
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~-~~~DvVIs~t~~Tas~~p~i~~~-~-- 248 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQ-DPYDVIFFGSSESAYAFPHLSWE-S-- 248 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcc-cCCCEEEEcCCcCCCCCceeeHH-H--
Confidence 567999999974 2 2334455556557777765543211110000111333 468998852 222111222 2
Q ss_pred HHHHhccCCcEEEEEeccCCCcCc---CCCCCcCChhHHHHhccc
Q 025148 183 EIERTLKPGGVCVLHVALSKRADK---YSANDLFSVKPLVKLFKR 224 (257)
Q Consensus 183 ~~~r~LkpgG~l~i~~~~~~~~~~---y~~~~~~~~~~~~~~f~~ 224 (257)
+.+..+ .+++.....+..+. .....+|+.+++..+.++
T Consensus 249 -~~~~~~---r~~iDLAvPRdId~v~~~~~v~Ly~iDdL~~i~~~ 289 (338)
T PRK00676 249 -LADIPD---RIVFDFNVPRTFPWSETPFPHRYLDMDFISEWVQK 289 (338)
T ss_pred -HhhccC---cEEEEecCCCCCccccccCCcEEEEhHHHHHHHHH
Confidence 222221 36766544443222 223356677766665443
No 481
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.37 E-value=2.1e+02 Score=25.29 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=25.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC---CCcEEEecCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRVG---VSDSVGIDLVP 143 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~gvD~s~ 143 (257)
.....|+.+|||.-.....|...+ ...++-||.++
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~ 123 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPE 123 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcH
Confidence 445689999999999988887753 34566667664
No 482
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=24.31 E-value=1e+02 Score=25.07 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=24.5
Q ss_pred CCeEEEECCCC-C-HHHHHHHHcCCCcEEEecCC
Q 025148 111 ESKALCIGARV-G-QEVEALKRVGVSDSVGIDLV 142 (257)
Q Consensus 111 ~~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s 142 (257)
..+|+=+|||. | ..+..|+..|..+++-+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46899999984 3 34556666787789999987
No 483
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=24.27 E-value=66 Score=26.80 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=24.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
...+++|.=||+|.++..+...+ .+|+.-|+++.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~-~~vi~ND~~~~ 53 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPG-KRVIINDINPD 53 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---S-SEEEEEES-HH
T ss_pred CCCEEEEEecchhHHHHHhcccc-cceeeeechHH
Confidence 67899999999999998887644 48999999865
No 484
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=24.12 E-value=1.5e+02 Score=25.64 Aligned_cols=87 Identities=15% Similarity=0.029 Sum_probs=48.6
Q ss_pred cCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCcEE-------EecCCCCC--------CCCCchhHHHHH
Q 025148 107 LLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPLVI-------EGDFHRQP--------FDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~~-------~~d~~~~~--------~~~~~fD~V~~~ 169 (257)
.+.++.+||=.|+| .|..+..+++....+++.++.+++..... ..+..+.. ...+.+|+++..
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~ 241 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVT 241 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEc
Confidence 45778899998886 45666666665445888887765421110 00111100 011234444321
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. -....+.+..+.++++|.++...
T Consensus 242 ~-----~~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 242 A-----VSAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred C-----CchHHHHHHHHHhhcCCEEEEec
Confidence 0 01356788889999999998653
No 485
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=23.98 E-value=49 Score=31.84 Aligned_cols=55 Identities=16% Similarity=0.110 Sum_probs=30.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
.+..+|| +-||+|.-+..+.+. ...+=.|+| .++.+.++.+.+-..+.+|+|++.
T Consensus 504 ~k~mKIL-vaCGsGiGTStmva~kIkk~Lke~GI~-----veV~~~~Vsev~s~~~~aDIIVtt 561 (602)
T PRK09548 504 GKPVRIL-AVCGQGQGSSMMMKMKIKKYLDKRGIP-----IIMDSCAVNDYKGKLETIDIIVCS 561 (602)
T ss_pred CcccEEE-EECCCCchHHHHHHHHHHHHHHHcCCC-----eEEEEechHhCcccCCCCCEEEEc
Confidence 3445776 789999877666542 111112222 234555665555444557887663
No 486
>PRK11018 hypothetical protein; Provisional
Probab=23.78 E-value=2.4e+02 Score=19.02 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
|.-..+...+.|++|..|.+.+-... +...+..+.++.|+..+....
T Consensus 21 Pvl~~kk~l~~l~~G~~L~V~~d~~~-----------a~~di~~~~~~~G~~v~~~~~ 67 (78)
T PRK11018 21 PAVATLEALPQLKKGEILEVVSDCPQ-----------SINNIPLDARNHGYTVLDIQQ 67 (78)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCcc-----------HHHHHHHHHHHcCCEEEEEEe
Confidence 33345666688899999888763322 577888999999987765443
No 487
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=23.69 E-value=1.3e+02 Score=26.06 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=25.9
Q ss_pred CeEEEECCCCC-HHHHHHHHcC-CCcEEEecCCCC
Q 025148 112 SKALCIGARVG-QEVEALKRVG-VSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~G-~~~~~l~~~~-~~~v~gvD~s~~ 144 (257)
.+||=.|+|++ .+...+.+.+ ..+|+++|.++.
T Consensus 2 ~~vLv~g~~~~~~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 2 MNILVTSAGRRVQLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred ceEEEecCCccHHHHHHHHHhccCCEEEEECCCCc
Confidence 47999999999 4666777765 469999999866
No 488
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=23.69 E-value=3e+02 Score=23.46 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=45.6
Q ss_pred cCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcEE--------EecCCCCC-------CCCCchhHHHHH
Q 025148 107 LLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLVI--------EGDFHRQP-------FDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~~--------~~d~~~~~-------~~~~~fD~V~~~ 169 (257)
.+.++.+||=.|+ +.|..+..+++..+.++++++.++...... ..+..+.+ ...+.+|+++..
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~ 221 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDN 221 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEc
Confidence 3567889998885 235555556665445888887654311100 00111100 001234444321
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ...+.+..+.|+++|.++..
T Consensus 222 ----~g--~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 222 ----VG--GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred ----ch--HHHHHHHHHhcCCCceEEEE
Confidence 11 14678889999999997754
No 489
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=23.64 E-value=5.5e+02 Score=23.15 Aligned_cols=111 Identities=11% Similarity=0.114 Sum_probs=63.2
Q ss_pred CCCeEEEEC--CCCCH--HHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHHHHhh--------cccc-
Q 025148 110 NESKALCIG--ARVGQ--EVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFD--------HALY- 176 (257)
Q Consensus 110 ~~~~vLDiG--cG~G~--~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~l~--------h~~~- 176 (257)
.+.|||=.| |..+. +...+-+.| +.|++-|.... ......++. ...+.++.+.-..+. +-++
T Consensus 232 ~~~RIl~tG~~~~~~~~k~~~~iE~~G-~~VV~dd~c~g-~r~~~~~v~---e~~dp~~aLA~~Yl~~~~~c~~~~~~~~ 306 (380)
T TIGR02263 232 DNCRVIICGMFCEQPPLNLIKSIELSG-CYIVDDDFIIV-HRFENNDVA---LAGDPLQNLALAFLHDSISTAAKYDDDE 306 (380)
T ss_pred CCCEEEEECcCCCCchHHHHHHHHHCC-CEEEEecCCcc-chhhhccCC---CCCCHHHHHHHHHhhCCCCCccccCCCh
Confidence 456999999 66652 333333344 58888886532 111222222 123456644222222 1122
Q ss_pred --HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 177 --PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 177 --~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
..+.+.++.+--+.+|++.+.....+ .+.+....+.+.+++.|+..+..
T Consensus 307 ~~R~~~i~~lvke~~aDGVI~~~~~~C~-------~~~~e~~~lk~~l~e~GIP~L~i 357 (380)
T TIGR02263 307 ADKGKYLLDQVRKNAAEGVIFAAPSFCD-------PALLERPMLAARCKEHGIPQIAF 357 (380)
T ss_pred hhHHHHHHHHHHHhCCCEEEEhHhhcCC-------hhhhhHHHHHHHHHHCCCCEEEE
Confidence 44567888888899999998764332 22235566778888889765544
No 490
>PLN02928 oxidoreductase family protein
Probab=23.51 E-value=2.6e+02 Score=24.86 Aligned_cols=34 Identities=12% Similarity=-0.056 Sum_probs=22.0
Q ss_pred CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCC
Q 025148 110 NESKALCIGARV-GQEVEALKRVGVSDSVGIDLVP 143 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~ 143 (257)
.|.+|.=||.|. |......++.-+.+|+++|.+.
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~ 192 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSW 192 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC
Confidence 467899999985 5433333332235999999863
No 491
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=23.11 E-value=1.8e+02 Score=21.85 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCCCeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC
Q 025148 109 SNESKALCIGARV--GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..+.+++-+|||. ...+..+.+.+..+++.+|.++.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~ 54 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE 54 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 4567999999973 12233334444457899998765
No 492
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=22.87 E-value=4.8e+02 Score=22.41 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=56.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCC-----CCCCCCchhHHHHH-
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHR-----QPFDDETFDFEFSN- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~-----~~~~~~~fD~V~~~- 169 (257)
+++++ |..=||+-.++..+.+... ++.++++-+. ++.+.++|... +|.+. .=-+|+-+
T Consensus 88 N~~~~-l~~YpGSP~lA~~llR~qD-Rl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~LPP~e-rRglVLIDP 164 (279)
T COG2961 88 NPGGG-LRYYPGSPLLARQLLREQD-RLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHLPPKE-RRGLVLIDP 164 (279)
T ss_pred CCCCC-cccCCCCHHHHHHHcchhc-eeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhCCCCC-cceEEEeCC
Confidence 34444 8889999999888877544 8999998877 34444444332 12211 12233332
Q ss_pred HhhccccHHHHHHHHHHhcc--CCcEEEEEeccCC
Q 025148 170 VFDHALYPDKFVMEIERTLK--PGGVCVLHVALSK 202 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~Lk--pgG~l~i~~~~~~ 202 (257)
-+|--.+..++++.+.+.+| ++|...|..|..+
T Consensus 165 PfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~ 199 (279)
T COG2961 165 PFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKD 199 (279)
T ss_pred CcccccHHHHHHHHHHHHHHhhcCceEEEEEeecc
Confidence 44444455666666666666 5899999887543
No 493
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=22.81 E-value=2.9e+02 Score=21.30 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=9.8
Q ss_pred ccccccchhhHHHHHHH
Q 025148 79 LRTTWTTRDWDRKIQVF 95 (257)
Q Consensus 79 ~~~~w~~~~w~~~~~~~ 95 (257)
++.+-..++|..-.+..
T Consensus 55 Lk~lI~kk~W~~vrn~i 71 (142)
T TIGR03042 55 LASLVAKEDWVFTRNLI 71 (142)
T ss_pred HHHHHhhcchHHHHHHH
Confidence 55555666676655543
No 494
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=22.66 E-value=1.8e+02 Score=25.98 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=25.2
Q ss_pred cCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCC
Q 025148 107 LLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 107 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+.++.+||=.|+. .|..+..+++....++++++.+++
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~ 229 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEE 229 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 45678899999972 344555556654457888877654
No 495
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.63 E-value=3.4e+02 Score=22.08 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=53.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----CCcEEEecCCCC-CCCC---CchhHHHHH--Hhhcccc
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----PPLVIEGDFHRQ-PFDD---ETFDFEFSN--VFDHALY 176 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~~~~~~~d~~~~-~~~~---~~fD~V~~~--~l~h~~~ 176 (257)
..+.+|-.|.|-+=.......+. +..+|+-.+.+.. ...++.-|.... .+|+ +.||+|+++ .+. .+-
T Consensus 72 ~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~-~eC 150 (217)
T KOG3350|consen 72 GEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYGTEFVFYDYNCPLDLPDELKAHFDIIVADPPFLS-EEC 150 (217)
T ss_pred ccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhccceeEEeccCCCCCCHHHHHhcccEEEeCCcccc-chh
Confidence 45678999999876644444442 5557777777654 334454454432 2332 569988775 221 111
Q ss_pred HHHHHHHHHHhccCCcEEEEEe
Q 025148 177 PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+.-..+.+.++++-.+++.+
T Consensus 151 l~Kts~tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 151 LAKTSETIKRLQRNQKKVILCT 172 (217)
T ss_pred hhhhHHHHHHHhcCCceEEEec
Confidence 1345566777888887777765
No 496
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=22.48 E-value=4.9e+02 Score=22.15 Aligned_cols=20 Identities=20% Similarity=0.116 Sum_probs=16.6
Q ss_pred HHHHHHHHhccCCcEEEEEe
Q 025148 179 KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+....+.|+++|.++...
T Consensus 245 ~~~~~~~~~l~~~G~~v~~g 264 (306)
T cd08258 245 PALEQALELLRKGGRIVQVG 264 (306)
T ss_pred HHHHHHHHHhhcCCEEEEEc
Confidence 57788899999999988654
No 497
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=22.21 E-value=2.7e+02 Score=23.81 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=46.4
Q ss_pred hcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCC-----CCCCCchhHHHHH
Q 025148 106 KLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQ-----PFDDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~-----~~~~~~fD~V~~~ 169 (257)
..+.++.+||=.|++ .|..+..+++..+.+|++++.+++.. .++..+-.+. ...++.+|+|+.
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~- 213 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYE- 213 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEE-
Confidence 345778899988853 35555666665445788887654411 1111110000 000122344332
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
... ...+.++.+.|+++|.++..
T Consensus 214 ---~~g--~~~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 214 ---SVG--GEMFDTCVDNLALKGRLIVI 236 (329)
T ss_pred ---CCc--HHHHHHHHHHhccCCeEEEE
Confidence 111 25678888999999988753
No 498
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=21.89 E-value=1e+02 Score=28.88 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=17.4
Q ss_pred HHHHHHHHhccCCcEEEEEec
Q 025148 179 KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+.+++...||||..|.++..
T Consensus 112 ~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 112 DVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred HHHHHHHhhCCCCCEEEecCC
Confidence 345889999999999999853
No 499
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=21.77 E-value=1.4e+02 Score=26.21 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=47.2
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC-------CCcEEEecC----C----CCCCCCCchhHHHHH--Hhh
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPY-------PPLVIEGDF----H----RQPFDDETFDFEFSN--VFD 172 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~-------~~~~~~~d~----~----~~~~~~~~fD~V~~~--~l~ 172 (257)
++|+=+|||. |.++..|++.+ ..|+.+--++. ...+..... . ..+-....+|+|+.. ..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~- 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY- 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-
Confidence 3788899986 45566666767 46666655542 111111111 0 001112357876442 32
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.+++++.+.+.++++..+++.-
T Consensus 79 ---q~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 79 ---QLEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred ---cHHHHHHHhhhcCCCCcEEEEEe
Confidence 25589999999999998766643
No 500
>PRK10458 DNA cytosine methylase; Provisional
Probab=21.77 E-value=1.1e+02 Score=28.67 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP 143 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~ 143 (257)
...-+++|+=||-|.+...+...|..-|.++|+++
T Consensus 86 ~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~ 120 (467)
T PRK10458 86 HYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK 120 (467)
T ss_pred CCCceEEEeCcCccHHHHHHHHcCCEEEEEEechH
Done!