Query 025148
Match_columns 257
No_of_seqs 425 out of 2579
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 04:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh0_A SAM dependent methyltra 99.8 1.1E-18 3.7E-23 143.4 10.6 142 107-248 34-194 (219)
2 2p7i_A Hypothetical protein; p 99.8 6.5E-19 2.2E-23 146.8 7.6 123 109-233 41-197 (250)
3 4htf_A S-adenosylmethionine-de 99.8 2.3E-18 8E-23 147.3 10.3 133 99-233 58-230 (285)
4 3h2b_A SAM-dependent methyltra 99.8 3.2E-18 1.1E-22 139.1 10.0 123 111-234 42-181 (203)
5 3dli_A Methyltransferase; PSI- 99.7 2.4E-18 8.1E-23 143.7 8.3 125 108-233 39-182 (240)
6 3bus_A REBM, methyltransferase 99.7 4.2E-18 1.4E-22 144.6 9.9 137 97-233 48-214 (273)
7 3l8d_A Methyltransferase; stru 99.7 4.5E-18 1.5E-22 141.7 9.5 125 108-233 51-198 (242)
8 1vl5_A Unknown conserved prote 99.7 3.9E-18 1.3E-22 143.9 8.9 125 107-232 34-187 (260)
9 3ujc_A Phosphoethanolamine N-m 99.7 3E-18 1E-22 144.5 7.9 134 100-233 45-204 (266)
10 1pjz_A Thiopurine S-methyltran 99.7 8.2E-18 2.8E-22 137.3 10.3 125 105-231 17-172 (203)
11 3i9f_A Putative type 11 methyl 99.7 5.8E-18 2E-22 133.7 8.9 136 108-249 15-162 (170)
12 2o57_A Putative sarcosine dime 99.7 6E-18 2.1E-22 145.5 9.0 127 107-233 79-232 (297)
13 3hnr_A Probable methyltransfer 99.7 1E-17 3.5E-22 137.7 9.6 124 109-234 44-200 (220)
14 3g5l_A Putative S-adenosylmeth 99.7 6E-18 2.1E-22 142.1 8.4 126 109-234 43-215 (253)
15 3ccf_A Cyclopropane-fatty-acyl 99.7 3.1E-18 1.1E-22 146.2 6.0 124 107-232 54-207 (279)
16 4gek_A TRNA (CMO5U34)-methyltr 99.7 1.1E-17 3.6E-22 142.1 9.1 140 105-247 65-257 (261)
17 3vc1_A Geranyl diphosphate 2-C 99.7 1.2E-17 4.1E-22 145.0 9.7 125 108-233 115-267 (312)
18 3dlc_A Putative S-adenosyl-L-m 99.7 1.8E-18 6.2E-23 141.5 4.2 139 108-248 42-215 (219)
19 3pfg_A N-methyltransferase; N, 99.7 2.6E-17 8.8E-22 139.1 11.2 139 109-249 49-251 (263)
20 1nkv_A Hypothetical protein YJ 99.7 6.8E-18 2.3E-22 141.9 7.4 130 102-232 28-184 (256)
21 1xtp_A LMAJ004091AAA; SGPP, st 99.7 7.2E-18 2.5E-22 141.4 7.5 135 100-234 83-237 (254)
22 3e23_A Uncharacterized protein 99.7 7.5E-18 2.6E-22 137.8 6.8 124 108-233 41-180 (211)
23 2zfu_A Nucleomethylin, cerebra 99.7 9.4E-17 3.2E-21 131.6 12.9 128 109-250 66-194 (215)
24 1xxl_A YCGJ protein; structura 99.7 3.1E-17 1.1E-21 136.9 10.1 128 105-233 16-172 (239)
25 3kkz_A Uncharacterized protein 99.7 8.5E-18 2.9E-22 142.5 6.7 125 108-233 44-194 (267)
26 2p35_A Trans-aconitate 2-methy 99.7 1E-17 3.5E-22 140.9 6.8 127 101-228 24-183 (259)
27 3cc8_A Putative methyltransfer 99.7 1.5E-17 5.3E-22 136.9 7.3 125 109-234 31-184 (230)
28 2gs9_A Hypothetical protein TT 99.7 3.1E-17 1.1E-21 134.0 9.0 113 108-223 34-170 (211)
29 1ri5_A MRNA capping enzyme; me 99.7 1.2E-17 4.2E-22 143.1 6.8 137 97-233 51-248 (298)
30 3ege_A Putative methyltransfer 99.7 2.6E-17 8.7E-22 139.3 8.5 122 108-232 32-175 (261)
31 4e2x_A TCAB9; kijanose, tetron 99.7 9.5E-18 3.2E-22 151.2 6.0 151 97-248 94-268 (416)
32 3f4k_A Putative methyltransfer 99.7 1.1E-17 3.7E-22 140.7 5.8 125 108-233 44-194 (257)
33 3ocj_A Putative exported prote 99.7 4.4E-17 1.5E-21 140.9 9.5 140 106-246 114-303 (305)
34 3mgg_A Methyltransferase; NYSG 99.7 2.3E-17 8E-22 140.3 7.5 129 105-233 32-196 (276)
35 3dtn_A Putative methyltransfer 99.7 9.3E-17 3.2E-21 133.2 10.9 126 108-234 42-213 (234)
36 3bkw_A MLL3908 protein, S-aden 99.7 5.9E-17 2E-21 134.8 8.8 126 109-234 42-213 (243)
37 1y8c_A S-adenosylmethionine-de 99.7 9.7E-17 3.3E-21 133.5 9.9 126 109-236 36-226 (246)
38 4hg2_A Methyltransferase type 99.7 1.9E-17 6.4E-22 140.2 4.9 89 109-199 38-136 (257)
39 3ou2_A SAM-dependent methyltra 99.7 2.7E-16 9.3E-21 128.6 11.6 122 108-231 44-201 (218)
40 1kpg_A CFA synthase;, cyclopro 99.7 1.2E-16 4.1E-21 136.7 9.8 132 99-233 53-226 (287)
41 3jwg_A HEN1, methyltransferase 99.7 1.6E-16 5.4E-21 130.6 10.1 123 109-232 28-189 (219)
42 3lcc_A Putative methyl chlorid 99.7 1.5E-16 5.3E-21 132.1 9.6 121 110-233 66-205 (235)
43 2p8j_A S-adenosylmethionine-de 99.7 1E-16 3.6E-21 130.4 8.2 124 108-232 21-180 (209)
44 3sm3_A SAM-dependent methyltra 99.7 6.3E-17 2.2E-21 133.7 6.9 125 108-233 28-205 (235)
45 3hem_A Cyclopropane-fatty-acyl 99.7 2E-16 6.7E-21 136.5 10.0 132 98-233 60-241 (302)
46 3bxo_A N,N-dimethyltransferase 99.7 3E-16 1E-20 130.2 10.7 135 109-246 39-238 (239)
47 1vlm_A SAM-dependent methyltra 99.7 3.2E-16 1.1E-20 129.0 10.7 119 111-234 48-187 (219)
48 4fsd_A Arsenic methyltransfera 99.7 8.2E-17 2.8E-21 143.7 7.7 124 108-231 81-247 (383)
49 2ex4_A Adrenal gland protein A 99.7 2.9E-17 9.7E-22 137.2 4.3 125 110-234 79-224 (241)
50 2xvm_A Tellurite resistance pr 99.7 3.5E-16 1.2E-20 126.1 10.4 114 109-224 31-164 (199)
51 3cgg_A SAM-dependent methyltra 99.7 4.8E-16 1.6E-20 124.5 10.8 120 108-237 44-177 (195)
52 2gb4_A Thiopurine S-methyltran 99.7 1.7E-16 5.8E-21 133.9 7.9 119 109-229 67-221 (252)
53 3jwh_A HEN1; methyltransferase 99.6 1.8E-16 6E-21 130.2 7.4 123 109-232 28-189 (217)
54 3ofk_A Nodulation protein S; N 99.6 2.6E-16 8.8E-21 129.0 7.8 93 108-202 49-158 (216)
55 2a14_A Indolethylamine N-methy 99.6 4.4E-17 1.5E-21 138.2 3.1 126 108-233 53-236 (263)
56 3g07_A 7SK snRNA methylphospha 99.6 2.9E-16 9.9E-21 135.2 8.3 137 110-248 46-288 (292)
57 3e8s_A Putative SAM dependent 99.6 5.5E-16 1.9E-20 127.2 8.9 124 109-234 51-208 (227)
58 3thr_A Glycine N-methyltransfe 99.6 1.6E-16 5.4E-21 136.3 5.8 91 109-200 56-177 (293)
59 3bkx_A SAM-dependent methyltra 99.6 2.6E-15 8.9E-20 127.4 12.2 134 101-234 34-218 (275)
60 2fk8_A Methoxy mycolic acid sy 99.6 6.9E-16 2.4E-20 134.0 8.4 129 99-231 79-250 (318)
61 2yqz_A Hypothetical protein TT 99.6 7.3E-16 2.5E-20 129.7 8.3 123 107-230 36-191 (263)
62 3g5t_A Trans-aconitate 3-methy 99.6 2.8E-16 9.7E-21 135.4 5.3 92 105-197 31-148 (299)
63 2g72_A Phenylethanolamine N-me 99.6 1.3E-16 4.3E-21 136.9 3.0 124 110-233 71-254 (289)
64 3d2l_A SAM-dependent methyltra 99.6 1.2E-15 4E-20 126.9 8.6 127 108-237 31-225 (243)
65 3gu3_A Methyltransferase; alph 99.6 8E-16 2.7E-20 131.7 7.7 125 108-233 20-188 (284)
66 1ve3_A Hypothetical protein PH 99.6 3.3E-15 1.1E-19 122.9 11.0 92 108-200 36-144 (227)
67 2avn_A Ubiquinone/menaquinone 99.6 1E-15 3.4E-20 129.3 8.0 91 109-200 53-154 (260)
68 2kw5_A SLR1183 protein; struct 99.6 1.2E-15 4.1E-20 123.6 7.5 118 109-231 29-167 (202)
69 3m70_A Tellurite resistance pr 99.6 1.1E-15 3.8E-20 130.7 7.5 119 110-230 120-257 (286)
70 3ggd_A SAM-dependent methyltra 99.6 1.4E-15 4.8E-20 127.0 7.6 163 62-233 14-217 (245)
71 3g2m_A PCZA361.24; SAM-depende 99.6 2.3E-15 8E-20 129.6 9.0 124 109-234 81-273 (299)
72 2aot_A HMT, histamine N-methyl 99.6 5.6E-16 1.9E-20 133.2 5.1 123 109-231 51-217 (292)
73 3q87_B N6 adenine specific DNA 99.6 2E-15 6.9E-20 119.7 7.9 123 109-246 22-161 (170)
74 2i62_A Nicotinamide N-methyltr 99.6 9.8E-16 3.3E-20 129.0 5.8 126 108-233 54-237 (265)
75 2pxx_A Uncharacterized protein 99.6 2E-15 6.8E-20 123.0 6.8 93 108-200 40-161 (215)
76 2vdw_A Vaccinia virus capping 99.6 1.3E-15 4.3E-20 131.9 5.5 91 110-200 48-171 (302)
77 3evz_A Methyltransferase; NYSG 99.6 7.4E-15 2.5E-19 121.4 9.0 136 104-249 49-222 (230)
78 4df3_A Fibrillarin-like rRNA/T 99.6 1.2E-15 4E-20 126.9 4.1 138 105-245 72-229 (233)
79 3orh_A Guanidinoacetate N-meth 99.5 6.3E-16 2.2E-20 129.1 1.1 91 108-198 58-170 (236)
80 1nt2_A Fibrillarin-like PRE-rR 99.5 4.4E-15 1.5E-19 121.9 5.6 90 108-199 55-162 (210)
81 3mq2_A 16S rRNA methyltransfer 99.5 8.6E-15 2.9E-19 120.1 6.8 123 108-231 25-180 (218)
82 2r3s_A Uncharacterized protein 99.5 5.2E-14 1.8E-18 122.8 12.0 124 109-234 164-322 (335)
83 3reo_A (ISO)eugenol O-methyltr 99.5 1.2E-13 4.2E-18 122.5 14.5 123 108-234 201-354 (368)
84 3grz_A L11 mtase, ribosomal pr 99.5 9.2E-15 3.2E-19 118.8 6.6 122 108-246 58-195 (205)
85 3lst_A CALO1 methyltransferase 99.5 6.2E-14 2.1E-18 123.4 12.3 125 107-234 181-335 (348)
86 3mcz_A O-methyltransferase; ad 99.5 9.2E-14 3.1E-18 122.2 13.4 138 108-247 176-349 (352)
87 1zx0_A Guanidinoacetate N-meth 99.5 1.6E-15 5.5E-20 126.2 1.9 91 108-198 58-170 (236)
88 1fbn_A MJ fibrillarin homologu 99.5 1.6E-14 5.6E-19 119.8 7.7 134 108-248 72-229 (230)
89 3m33_A Uncharacterized protein 99.5 4.7E-15 1.6E-19 122.6 4.5 107 108-232 46-164 (226)
90 3e05_A Precorrin-6Y C5,15-meth 99.5 3.7E-14 1.3E-18 115.2 9.5 108 106-227 36-160 (204)
91 1wzn_A SAM-dependent methyltra 99.5 2.5E-14 8.6E-19 119.7 8.6 102 97-200 28-147 (252)
92 2plw_A Ribosomal RNA methyltra 99.5 4.5E-14 1.6E-18 114.2 9.4 93 107-199 19-155 (201)
93 3bgv_A MRNA CAP guanine-N7 met 99.5 9.3E-15 3.2E-19 126.7 5.4 92 109-200 33-157 (313)
94 2ip2_A Probable phenazine-spec 99.5 2.2E-13 7.4E-18 119.0 14.1 123 108-234 166-321 (334)
95 1ej0_A FTSJ; methyltransferase 99.5 4.6E-14 1.6E-18 110.9 8.8 95 107-201 19-139 (180)
96 3p9n_A Possible methyltransfer 99.5 1.4E-14 4.7E-19 116.5 5.9 93 109-201 43-156 (189)
97 3dp7_A SAM-dependent methyltra 99.5 4.9E-14 1.7E-18 124.8 9.6 136 109-247 178-355 (363)
98 3gwz_A MMCR; methyltransferase 99.5 1.6E-13 5.4E-18 121.8 12.8 125 107-234 199-355 (369)
99 1x19_A CRTF-related protein; m 99.5 2E-13 6.8E-18 120.6 13.4 130 102-234 182-347 (359)
100 3mti_A RRNA methylase; SAM-dep 99.5 1.2E-14 4.2E-19 116.1 5.1 93 106-199 18-136 (185)
101 1fp1_D Isoliquiritigenin 2'-O- 99.5 6.9E-14 2.4E-18 124.2 10.4 123 108-234 207-359 (372)
102 1dus_A MJ0882; hypothetical pr 99.5 1.6E-14 5.5E-19 115.5 5.6 93 107-201 49-160 (194)
103 1fp2_A Isoflavone O-methyltran 99.5 1E-13 3.4E-18 122.2 11.0 123 108-234 186-340 (352)
104 3i53_A O-methyltransferase; CO 99.5 8.9E-14 3E-18 121.5 10.3 123 109-234 168-320 (332)
105 1qzz_A RDMB, aclacinomycin-10- 99.5 7.9E-14 2.7E-18 123.6 10.0 139 108-249 180-358 (374)
106 3fpf_A Mtnas, putative unchara 99.5 1.4E-13 4.9E-18 117.9 11.1 91 105-199 117-223 (298)
107 1yzh_A TRNA (guanine-N(7)-)-me 99.5 3.3E-14 1.1E-18 116.5 6.5 114 109-233 40-180 (214)
108 3id6_C Fibrillarin-like rRNA/T 99.5 6E-14 2E-18 116.7 7.5 136 107-246 73-230 (232)
109 3sso_A Methyltransferase; macr 99.5 1.8E-14 6.1E-19 127.8 4.6 93 108-200 214-326 (419)
110 3uwp_A Histone-lysine N-methyl 99.5 1.8E-14 6.1E-19 128.1 4.5 103 97-199 160-289 (438)
111 2nxc_A L11 mtase, ribosomal pr 99.5 8.7E-14 3E-18 117.3 8.3 123 108-246 118-254 (254)
112 3p9c_A Caffeic acid O-methyltr 99.5 6.8E-13 2.3E-17 117.5 14.3 124 108-234 199-352 (364)
113 3hm2_A Precorrin-6Y C5,15-meth 99.5 5.1E-14 1.7E-18 111.4 6.2 106 106-227 21-145 (178)
114 2ipx_A RRNA 2'-O-methyltransfe 99.5 2.4E-14 8.3E-19 118.8 4.4 130 108-240 75-224 (233)
115 3iv6_A Putative Zn-dependent a 99.5 4.9E-14 1.7E-18 119.2 6.3 96 102-199 37-149 (261)
116 3dmg_A Probable ribosomal RNA 99.5 5.6E-14 1.9E-18 125.2 6.9 115 109-237 232-366 (381)
117 3dou_A Ribosomal RNA large sub 99.5 1.5E-13 5.1E-18 111.1 8.8 93 106-199 21-140 (191)
118 3njr_A Precorrin-6Y methylase; 99.5 1.4E-13 4.8E-18 112.3 8.4 107 106-228 51-173 (204)
119 2fyt_A Protein arginine N-meth 99.4 1E-13 3.5E-18 121.8 7.6 88 108-195 62-168 (340)
120 4dzr_A Protein-(glutamine-N5) 99.4 1.5E-14 5.2E-19 117.6 2.0 127 109-248 29-206 (215)
121 1tw3_A COMT, carminomycin 4-O- 99.4 4.7E-13 1.6E-17 118.1 11.6 124 108-234 181-338 (360)
122 3q7e_A Protein arginine N-meth 99.4 6.1E-14 2.1E-18 123.6 5.7 89 109-197 65-172 (349)
123 3htx_A HEN1; HEN1, small RNA m 99.4 1.2E-13 4.2E-18 131.3 7.9 92 109-201 720-837 (950)
124 2nyu_A Putative ribosomal RNA 99.4 1.1E-13 3.9E-18 111.3 6.6 94 106-199 18-146 (196)
125 2oxt_A Nucleoside-2'-O-methylt 99.4 8.2E-14 2.8E-18 118.2 5.9 95 101-199 65-186 (265)
126 3lpm_A Putative methyltransfer 99.4 9.4E-14 3.2E-18 117.2 6.3 112 108-231 46-197 (259)
127 1xdz_A Methyltransferase GIDB; 99.4 7.1E-14 2.4E-18 116.6 5.2 130 109-250 69-222 (240)
128 2fca_A TRNA (guanine-N(7)-)-me 99.4 5.3E-14 1.8E-18 115.5 4.3 91 109-199 37-154 (213)
129 3eey_A Putative rRNA methylase 99.4 6E-14 2E-18 113.2 4.2 93 107-199 19-140 (197)
130 2pwy_A TRNA (adenine-N(1)-)-me 99.4 2.6E-13 9E-18 113.8 8.1 117 102-233 88-222 (258)
131 1yb2_A Hypothetical protein TA 99.4 1.3E-13 4.3E-18 117.5 6.2 112 106-233 106-235 (275)
132 3r0q_C Probable protein argini 99.4 1.3E-13 4.5E-18 122.7 6.4 92 106-198 59-169 (376)
133 1jsx_A Glucose-inhibited divis 99.4 4.1E-13 1.4E-17 109.0 8.8 104 110-231 65-184 (207)
134 2b3t_A Protein methyltransfera 99.4 2.4E-13 8E-18 115.8 7.7 124 109-245 108-274 (276)
135 2wa2_A Non-structural protein 99.4 1.2E-13 4E-18 118.0 5.7 97 99-199 71-194 (276)
136 3hp7_A Hemolysin, putative; st 99.4 2.7E-13 9.2E-18 116.1 7.7 122 109-233 84-230 (291)
137 1af7_A Chemotaxis receptor met 99.4 1.4E-13 4.9E-18 117.2 5.6 89 110-198 105-252 (274)
138 3lbf_A Protein-L-isoaspartate 99.4 1.4E-13 4.7E-18 112.2 4.8 87 107-200 74-176 (210)
139 1p91_A Ribosomal RNA large sub 99.4 2.2E-13 7.4E-18 115.2 6.2 89 109-203 84-183 (269)
140 2qe6_A Uncharacterized protein 99.4 5.3E-13 1.8E-17 113.8 8.4 117 110-228 77-235 (274)
141 1l3i_A Precorrin-6Y methyltran 99.4 1.7E-13 5.7E-18 109.3 4.4 105 107-227 30-152 (192)
142 3mb5_A SAM-dependent methyltra 99.4 2E-13 6.7E-18 114.6 5.1 114 104-233 87-220 (255)
143 1zg3_A Isoflavanone 4'-O-methy 99.4 1.1E-12 3.6E-17 115.9 9.9 123 109-234 192-346 (358)
144 3p2e_A 16S rRNA methylase; met 99.4 5.8E-13 2E-17 110.3 7.4 125 108-232 22-182 (225)
145 1g6q_1 HnRNP arginine N-methyl 99.4 3.7E-13 1.3E-17 117.6 6.5 88 109-196 37-143 (328)
146 2yxd_A Probable cobalt-precorr 99.4 4.4E-13 1.5E-17 106.1 6.4 104 107-228 32-150 (183)
147 4azs_A Methyltransferase WBDD; 99.4 3.4E-13 1.2E-17 126.2 5.7 127 109-239 65-212 (569)
148 2y1w_A Histone-arginine methyl 99.4 3E-13 1E-17 119.1 5.1 91 107-198 47-155 (348)
149 3dxy_A TRNA (guanine-N(7)-)-me 99.4 8.9E-14 3E-18 114.7 1.5 91 109-199 33-151 (218)
150 2ld4_A Anamorsin; methyltransf 99.4 1.3E-13 4.4E-18 109.4 2.2 117 108-232 10-133 (176)
151 2esr_A Methyltransferase; stru 99.4 8.8E-14 3E-18 110.3 1.2 94 108-201 29-141 (177)
152 1g8a_A Fibrillarin-like PRE-rR 99.4 1.5E-12 5.1E-17 107.4 8.3 123 108-234 71-211 (227)
153 3opn_A Putative hemolysin; str 99.4 9E-13 3.1E-17 109.7 6.7 118 109-233 36-182 (232)
154 3g89_A Ribosomal RNA small sub 99.3 6E-13 2.1E-17 111.9 5.5 130 109-250 79-232 (249)
155 1o54_A SAM-dependent O-methylt 99.3 9E-13 3.1E-17 112.2 6.3 116 103-234 105-238 (277)
156 1vbf_A 231AA long hypothetical 99.3 6.8E-13 2.3E-17 109.6 5.4 89 106-201 66-168 (231)
157 2bm8_A Cephalosporin hydroxyla 99.3 1.3E-12 4.3E-17 109.1 6.7 107 110-225 81-207 (236)
158 2ift_A Putative methylase HI07 99.3 3.9E-13 1.3E-17 109.3 3.4 90 110-199 53-164 (201)
159 2yvl_A TRMI protein, hypotheti 99.3 3.1E-12 1E-16 106.6 8.9 110 105-231 86-211 (248)
160 3ckk_A TRNA (guanine-N(7)-)-me 99.3 8E-13 2.7E-17 110.2 5.2 92 109-200 45-170 (235)
161 2fhp_A Methylase, putative; al 99.3 2.9E-13 1E-17 107.8 2.4 94 109-202 43-158 (187)
162 1i9g_A Hypothetical protein RV 99.3 1.5E-12 5E-17 110.8 6.9 95 103-201 92-206 (280)
163 4dcm_A Ribosomal RNA large sub 99.3 2E-12 7E-17 114.9 7.8 116 109-237 221-361 (375)
164 4hc4_A Protein arginine N-meth 99.3 1.6E-12 5.6E-17 115.2 6.9 87 110-197 83-188 (376)
165 2frn_A Hypothetical protein PH 99.3 1.4E-12 4.8E-17 111.3 6.1 113 108-229 123-251 (278)
166 2fpo_A Methylase YHHF; structu 99.3 3.6E-13 1.2E-17 109.6 2.2 91 110-200 54-162 (202)
167 2ozv_A Hypothetical protein AT 99.3 4.6E-12 1.6E-16 107.1 8.8 92 109-200 35-172 (260)
168 3fzg_A 16S rRNA methylase; met 99.3 1.1E-12 3.9E-17 104.9 4.7 88 108-196 47-150 (200)
169 2p41_A Type II methyltransfera 99.3 2E-12 6.8E-17 111.9 6.4 93 103-199 75-192 (305)
170 2yxe_A Protein-L-isoaspartate 99.3 1.4E-12 4.9E-17 106.5 4.9 87 107-199 74-178 (215)
171 4a6d_A Hydroxyindole O-methylt 99.3 1.2E-11 4.2E-16 109.0 10.7 125 108-234 177-333 (353)
172 3gdh_A Trimethylguanosine synt 99.3 1.5E-14 5.1E-19 120.5 -7.7 123 110-234 78-218 (241)
173 2pjd_A Ribosomal RNA small sub 99.3 2.1E-12 7.3E-17 113.4 5.1 115 109-237 195-330 (343)
174 1dl5_A Protein-L-isoaspartate 99.3 1.6E-12 5.6E-17 112.9 4.3 90 105-200 70-177 (317)
175 2xyq_A Putative 2'-O-methyl tr 99.3 4.3E-12 1.5E-16 108.7 6.8 113 107-233 60-195 (290)
176 1nv8_A HEMK protein; class I a 99.3 8E-12 2.7E-16 107.0 8.3 120 110-247 123-282 (284)
177 3tma_A Methyltransferase; thum 99.3 1.9E-11 6.5E-16 107.7 10.8 116 103-233 196-337 (354)
178 3bzb_A Uncharacterized protein 99.3 1.2E-11 4.2E-16 105.6 8.9 118 109-232 78-234 (281)
179 1o9g_A RRNA methyltransferase; 99.3 3E-12 1E-16 107.3 4.9 89 109-197 50-213 (250)
180 3b3j_A Histone-arginine methyl 99.3 4.1E-12 1.4E-16 116.4 6.0 90 108-198 156-263 (480)
181 1u2z_A Histone-lysine N-methyl 99.2 6.7E-12 2.3E-16 113.1 6.4 97 102-199 234-360 (433)
182 3adn_A Spermidine synthase; am 99.2 9E-12 3.1E-16 107.2 6.7 91 109-199 82-199 (294)
183 1jg1_A PIMT;, protein-L-isoasp 99.2 3.4E-12 1.2E-16 106.0 3.8 88 107-201 88-192 (235)
184 2vdv_E TRNA (guanine-N(7)-)-me 99.2 6E-12 2.1E-16 105.3 5.3 88 108-199 47-174 (246)
185 2b25_A Hypothetical protein; s 99.2 6.7E-12 2.3E-16 109.8 5.5 91 106-200 101-221 (336)
186 1ws6_A Methyltransferase; stru 99.2 6.1E-13 2.1E-17 104.3 -1.2 90 110-202 41-151 (171)
187 3r3h_A O-methyltransferase, SA 99.2 7.6E-12 2.6E-16 104.7 4.8 88 110-199 60-171 (242)
188 3bwc_A Spermidine synthase; SA 99.2 5.3E-12 1.8E-16 109.1 3.9 118 109-233 94-238 (304)
189 3u81_A Catechol O-methyltransf 99.2 2.8E-12 9.7E-17 105.5 2.0 89 110-199 58-171 (221)
190 3dr5_A Putative O-methyltransf 99.2 4.1E-12 1.4E-16 104.9 2.5 100 97-198 43-163 (221)
191 3tfw_A Putative O-methyltransf 99.2 6.6E-12 2.2E-16 105.3 3.5 89 109-199 62-171 (248)
192 3giw_A Protein of unknown func 99.2 2.6E-11 8.9E-16 102.7 7.0 115 112-228 80-240 (277)
193 3ntv_A MW1564 protein; rossman 99.2 4.8E-12 1.6E-16 105.0 2.2 88 109-198 70-176 (232)
194 1ixk_A Methyltransferase; open 99.2 2E-11 6.7E-16 106.1 5.9 114 108-229 116-269 (315)
195 3c3p_A Methyltransferase; NP_9 99.2 2E-11 6.9E-16 99.4 5.3 86 110-198 56-160 (210)
196 1i1n_A Protein-L-isoaspartate 99.2 1.4E-11 4.7E-16 101.4 4.1 87 108-200 75-184 (226)
197 3lec_A NADB-rossmann superfami 99.2 3.4E-11 1.2E-15 99.6 5.9 114 105-233 16-147 (230)
198 2pbf_A Protein-L-isoaspartate 99.1 2.6E-11 9E-16 99.8 5.1 87 107-199 77-194 (227)
199 3tr6_A O-methyltransferase; ce 99.1 2.3E-11 8E-16 99.9 4.5 88 110-199 64-175 (225)
200 3gjy_A Spermidine synthase; AP 99.1 1.2E-11 4.2E-16 107.0 2.9 88 112-199 91-201 (317)
201 1ne2_A Hypothetical protein TA 99.1 5.9E-11 2E-15 95.8 6.7 84 108-196 49-145 (200)
202 3tm4_A TRNA (guanine N2-)-meth 99.1 1.2E-10 4.2E-15 103.4 9.2 110 108-233 215-350 (373)
203 2gpy_A O-methyltransferase; st 99.1 1.3E-11 4.6E-16 102.1 2.6 88 109-198 53-160 (233)
204 3ajd_A Putative methyltransfer 99.1 1.8E-11 6E-16 104.2 2.7 93 108-200 81-213 (274)
205 3gnl_A Uncharacterized protein 99.1 5.8E-11 2E-15 99.1 5.5 110 105-233 16-147 (244)
206 3kr9_A SAM-dependent methyltra 99.1 6.3E-11 2.1E-15 97.8 5.5 113 105-233 10-141 (225)
207 3a27_A TYW2, uncharacterized p 99.1 2.7E-11 9.4E-16 103.0 3.4 89 107-199 116-220 (272)
208 1inl_A Spermidine synthase; be 99.1 1.5E-11 5E-16 106.0 1.6 91 109-199 89-206 (296)
209 1iy9_A Spermidine synthase; ro 99.1 1.3E-11 4.4E-16 105.2 1.1 91 109-199 74-190 (275)
210 1r18_A Protein-L-isoaspartate( 99.1 3.9E-11 1.3E-15 99.0 3.6 85 108-199 82-195 (227)
211 3duw_A OMT, O-methyltransferas 99.1 2.3E-11 7.7E-16 99.9 2.2 89 109-199 57-168 (223)
212 2igt_A SAM dependent methyltra 99.1 1.8E-11 6.3E-16 107.0 0.8 90 109-199 152-273 (332)
213 1xj5_A Spermidine synthase 1; 99.1 6.9E-11 2.4E-15 103.4 3.9 90 109-198 119-235 (334)
214 1wy7_A Hypothetical protein PH 99.1 4.8E-10 1.7E-14 90.7 8.7 105 108-228 47-168 (207)
215 2ih2_A Modification methylase 99.1 7.8E-10 2.7E-14 99.2 10.9 116 109-232 38-191 (421)
216 2pt6_A Spermidine synthase; tr 99.1 2.4E-11 8.1E-16 105.9 0.8 91 109-199 115-231 (321)
217 2cmg_A Spermidine synthase; tr 99.0 9.8E-11 3.4E-15 99.1 4.2 83 109-199 71-172 (262)
218 1uir_A Polyamine aminopropyltr 99.0 2.5E-11 8.4E-16 105.4 0.4 90 109-198 76-195 (314)
219 1sqg_A SUN protein, FMU protei 99.0 2E-10 6.9E-15 103.8 6.3 93 108-200 244-376 (429)
220 1sui_A Caffeoyl-COA O-methyltr 99.0 3.6E-11 1.2E-15 100.8 1.3 88 109-198 78-190 (247)
221 2qm3_A Predicted methyltransfe 99.0 3.5E-10 1.2E-14 100.4 7.7 90 109-199 171-279 (373)
222 2b2c_A Spermidine synthase; be 99.0 2.3E-11 8E-16 105.5 0.0 90 109-198 107-222 (314)
223 2o07_A Spermidine synthase; st 99.0 6.6E-11 2.2E-15 102.3 2.7 91 109-199 94-210 (304)
224 1yub_A Ermam, rRNA methyltrans 99.0 2E-11 6.8E-16 102.2 -0.9 92 106-199 25-146 (245)
225 1zq9_A Probable dimethyladenos 99.0 1E-10 3.5E-15 100.2 3.1 93 100-195 18-144 (285)
226 2hnk_A SAM-dependent O-methylt 99.0 7.8E-11 2.7E-15 97.9 2.3 89 109-199 59-182 (239)
227 2yxl_A PH0851 protein, 450AA l 99.0 2.7E-10 9.1E-15 103.6 5.9 93 108-200 257-391 (450)
228 2f8l_A Hypothetical protein LM 99.0 4.2E-10 1.4E-14 98.8 6.9 113 109-229 129-280 (344)
229 2i7c_A Spermidine synthase; tr 99.0 1.1E-10 3.8E-15 99.8 2.8 92 108-199 76-193 (283)
230 3cbg_A O-methyltransferase; cy 99.0 8.1E-11 2.8E-15 97.6 1.8 88 110-199 72-183 (232)
231 3frh_A 16S rRNA methylase; met 99.0 5.4E-10 1.9E-14 92.5 6.4 87 109-199 104-206 (253)
232 2as0_A Hypothetical protein PH 99.0 8.2E-11 2.8E-15 105.2 1.0 93 108-200 215-337 (396)
233 2avd_A Catechol-O-methyltransf 99.0 8.9E-11 3E-15 96.6 0.9 88 109-198 68-179 (229)
234 2frx_A Hypothetical protein YE 99.0 2.6E-10 9E-15 104.3 4.1 91 110-200 117-248 (479)
235 1mjf_A Spermidine synthase; sp 99.0 1.1E-10 3.7E-15 99.7 1.4 90 109-199 74-194 (281)
236 3k6r_A Putative transferase PH 99.0 2.9E-10 9.8E-15 96.8 3.6 113 107-228 122-250 (278)
237 3c3y_A Pfomt, O-methyltransfer 98.9 1.3E-10 4.6E-15 96.7 1.3 88 109-198 69-181 (237)
238 3m6w_A RRNA methylase; rRNA me 98.9 1.5E-10 5E-15 105.3 1.2 93 108-200 99-231 (464)
239 2h00_A Methyltransferase 10 do 98.9 1.6E-09 5.4E-14 90.7 7.0 124 110-233 65-236 (254)
240 3v97_A Ribosomal RNA large sub 98.9 2E-10 6.7E-15 109.8 1.6 91 110-200 539-659 (703)
241 3evf_A RNA-directed RNA polyme 98.9 2E-09 7E-14 90.4 7.5 99 101-199 65-185 (277)
242 4dmg_A Putative uncharacterize 98.9 7.3E-10 2.5E-14 98.9 5.0 93 107-200 211-328 (393)
243 3m4x_A NOL1/NOP2/SUN family pr 98.9 3.3E-10 1.1E-14 102.9 2.7 93 108-200 103-236 (456)
244 2b78_A Hypothetical protein SM 98.9 5.1E-10 1.8E-14 99.8 3.8 92 109-200 211-333 (385)
245 1wxx_A TT1595, hypothetical pr 98.9 1.9E-10 6.7E-15 102.4 -0.7 90 110-200 209-327 (382)
246 2yx1_A Hypothetical protein MJ 98.9 7.8E-10 2.7E-14 96.8 3.1 84 108-199 193-292 (336)
247 1qam_A ERMC' methyltransferase 98.8 2.3E-09 7.8E-14 89.6 4.6 88 107-196 27-144 (244)
248 3c0k_A UPF0064 protein YCCW; P 98.8 7.3E-10 2.5E-14 99.1 1.3 91 109-199 219-340 (396)
249 1uwv_A 23S rRNA (uracil-5-)-me 98.8 1.2E-08 4.3E-13 92.1 8.7 86 108-198 284-389 (433)
250 3lcv_B Sisomicin-gentamicin re 98.8 1.1E-09 3.6E-14 91.7 1.1 87 109-196 131-234 (281)
251 3gru_A Dimethyladenosine trans 98.8 4E-09 1.4E-13 90.5 4.7 73 98-171 38-123 (295)
252 2h1r_A Dimethyladenosine trans 98.8 4.1E-09 1.4E-13 90.7 4.7 67 105-174 37-118 (299)
253 2okc_A Type I restriction enzy 98.7 7.1E-09 2.4E-13 94.0 4.3 91 109-200 170-309 (445)
254 3gcz_A Polyprotein; flavivirus 98.7 2E-08 6.9E-13 84.5 5.8 99 101-199 81-202 (282)
255 2jjq_A Uncharacterized RNA met 98.7 4.2E-08 1.4E-12 88.5 7.9 85 108-198 288-387 (425)
256 2px2_A Genome polyprotein [con 98.6 2.2E-08 7.4E-13 83.1 4.3 95 102-199 65-184 (269)
257 3ldu_A Putative methylase; str 98.6 6.8E-08 2.3E-12 86.0 7.6 97 102-199 187-345 (385)
258 3k0b_A Predicted N6-adenine-sp 98.6 9.7E-08 3.3E-12 85.2 8.1 98 101-199 192-351 (393)
259 3fut_A Dimethyladenosine trans 98.6 3.4E-08 1.2E-12 83.7 4.6 75 99-175 36-123 (271)
260 3ldg_A Putative uncharacterize 98.6 1.5E-07 5.3E-12 83.6 8.4 99 100-199 184-344 (384)
261 4auk_A Ribosomal RNA large sub 98.5 8.9E-08 3.1E-12 84.0 6.5 82 106-191 207-296 (375)
262 3tqs_A Ribosomal RNA small sub 98.5 3.4E-08 1.2E-12 83.0 3.6 70 98-169 17-103 (255)
263 3b5i_A S-adenosyl-L-methionine 98.5 2.2E-07 7.5E-12 82.2 8.9 90 111-200 53-227 (374)
264 2efj_A 3,7-dimethylxanthine me 98.5 7.3E-08 2.5E-12 85.3 5.3 117 111-227 53-283 (384)
265 2qfm_A Spermine synthase; sper 98.5 1.5E-08 5.2E-13 88.8 0.8 91 109-199 187-315 (364)
266 4gqb_A Protein arginine N-meth 98.5 1.5E-08 5.1E-13 95.0 0.6 84 111-195 358-464 (637)
267 3eld_A Methyltransferase; flav 98.5 3E-07 1E-11 77.9 8.2 95 105-199 76-192 (300)
268 2k4m_A TR8_protein, UPF0146 pr 98.5 1.1E-07 3.9E-12 72.3 4.8 60 109-168 34-95 (153)
269 3bt7_A TRNA (uracil-5-)-methyl 98.5 5.8E-08 2E-12 85.9 3.6 83 110-200 213-328 (369)
270 3ua3_A Protein arginine N-meth 98.4 2.9E-08 1E-12 93.3 0.8 85 111-195 410-531 (745)
271 2b9e_A NOL1/NOP2/SUN domain fa 98.4 1.5E-07 5.1E-12 81.3 5.1 92 108-200 100-236 (309)
272 2qy6_A UPF0209 protein YFCK; s 98.4 3.5E-08 1.2E-12 83.0 0.6 121 109-245 59-244 (257)
273 3lkz_A Non-structural protein 98.4 4E-07 1.4E-11 76.8 6.5 99 98-198 82-204 (321)
274 2dul_A N(2),N(2)-dimethylguano 98.3 5.6E-08 1.9E-12 86.3 0.1 86 110-198 47-164 (378)
275 3p8z_A Mtase, non-structural p 98.3 6.2E-07 2.1E-11 73.4 6.2 97 99-198 67-186 (267)
276 2ar0_A M.ecoki, type I restric 98.3 1.1E-07 3.8E-12 88.2 2.1 93 108-200 167-314 (541)
277 3axs_A Probable N(2),N(2)-dime 98.3 6.2E-08 2.1E-12 86.3 -0.3 87 109-198 51-158 (392)
278 3ftd_A Dimethyladenosine trans 98.3 5E-07 1.7E-11 75.6 4.1 71 99-169 20-102 (249)
279 1m6e_X S-adenosyl-L-methionnin 98.2 2.4E-07 8.3E-12 81.3 0.9 90 110-199 51-210 (359)
280 3o4f_A Spermidine synthase; am 98.2 8E-07 2.7E-11 75.8 3.9 92 108-199 81-199 (294)
281 3uzu_A Ribosomal RNA small sub 98.2 1E-06 3.5E-11 74.9 4.5 61 100-160 32-106 (279)
282 3v97_A Ribosomal RNA large sub 98.1 4.1E-06 1.4E-10 80.0 8.0 97 103-199 183-348 (703)
283 3s1s_A Restriction endonucleas 98.1 3.7E-06 1.3E-10 80.4 7.4 121 109-234 320-497 (878)
284 2r6z_A UPF0341 protein in RSP 98.1 9.7E-08 3.3E-12 80.4 -3.0 88 109-199 82-217 (258)
285 3lkd_A Type I restriction-modi 98.1 1.9E-06 6.6E-11 79.8 5.3 119 109-233 220-388 (542)
286 1qyr_A KSGA, high level kasuga 98.1 2E-06 6.9E-11 72.0 3.7 66 101-169 12-97 (252)
287 1m6y_A S-adenosyl-methyltransf 98.0 5.8E-07 2E-11 77.3 -0.1 63 107-169 23-105 (301)
288 3khk_A Type I restriction-modi 98.0 1.5E-06 5E-11 80.7 2.1 132 112-248 246-447 (544)
289 2oyr_A UPF0341 protein YHIQ; a 98.0 6.4E-07 2.2E-11 75.3 -0.7 82 109-192 85-194 (258)
290 3cvo_A Methyltransferase-like 97.8 1.4E-05 4.7E-10 64.6 4.3 81 110-196 30-152 (202)
291 3ll7_A Putative methyltransfer 97.8 2.1E-06 7.1E-11 76.7 -1.5 62 107-169 90-170 (410)
292 3r24_A NSP16, 2'-O-methyl tran 97.7 7E-05 2.4E-09 63.2 7.4 106 91-199 89-218 (344)
293 2wk1_A NOVP; transferase, O-me 97.6 6.2E-05 2.1E-09 63.9 5.5 88 110-198 106-244 (282)
294 3c6k_A Spermine synthase; sper 97.6 9.4E-06 3.2E-10 71.5 0.3 90 109-198 204-331 (381)
295 4fzv_A Putative methyltransfer 97.5 3E-05 1E-09 68.1 1.9 94 108-201 146-287 (359)
296 3vyw_A MNMC2; tRNA wobble urid 97.3 0.00016 5.3E-09 61.9 4.0 120 111-246 97-258 (308)
297 3ufb_A Type I restriction-modi 97.1 0.00062 2.1E-08 62.8 6.2 92 109-200 216-364 (530)
298 2zig_A TTHA0409, putative modi 97.0 0.00074 2.5E-08 57.6 5.5 46 97-144 223-268 (297)
299 2vz8_A Fatty acid synthase; tr 96.5 0.0012 4E-08 71.2 3.3 122 109-231 1239-1391(2512)
300 1wg8_A Predicted S-adenosylmet 96.3 0.0042 1.4E-07 52.4 4.7 41 103-144 15-55 (285)
301 1g60_A Adenine-specific methyl 95.9 0.011 3.7E-07 49.2 5.7 46 97-144 200-245 (260)
302 1i4w_A Mitochondrial replicati 95.1 0.023 8E-07 49.5 5.1 47 110-156 58-117 (353)
303 3tos_A CALS11; methyltransfera 93.9 0.17 5.7E-06 42.0 7.4 36 109-144 68-111 (257)
304 2dph_A Formaldehyde dismutase; 93.8 0.037 1.3E-06 48.8 3.4 91 105-197 180-298 (398)
305 3two_A Mannitol dehydrogenase; 93.7 0.03 1E-06 48.4 2.7 83 106-197 172-264 (348)
306 1f8f_A Benzyl alcohol dehydrog 93.5 0.038 1.3E-06 48.1 3.0 88 105-197 185-288 (371)
307 3tka_A Ribosomal RNA small sub 93.2 0.078 2.7E-06 45.8 4.3 46 99-144 46-93 (347)
308 2oo3_A Protein involved in cat 92.7 0.0096 3.3E-07 50.2 -2.1 91 111-202 92-202 (283)
309 1rjd_A PPM1P, carboxy methyl t 92.2 0.74 2.5E-05 39.6 9.2 132 93-228 83-281 (334)
310 2zig_A TTHA0409, putative modi 92.1 0.016 5.5E-07 49.1 -1.4 25 176-200 75-99 (297)
311 3goh_A Alcohol dehydrogenase, 92.1 0.084 2.9E-06 44.8 3.1 84 104-197 136-228 (315)
312 1kol_A Formaldehyde dehydrogen 91.7 0.11 3.7E-06 45.7 3.5 91 105-197 180-299 (398)
313 3gms_A Putative NADPH:quinone 91.6 0.12 4.2E-06 44.3 3.7 89 104-198 138-243 (340)
314 1pl8_A Human sorbitol dehydrog 91.3 0.049 1.7E-06 47.2 0.7 88 105-197 166-272 (356)
315 3uko_A Alcohol dehydrogenase c 91.2 0.28 9.5E-06 42.7 5.5 90 103-197 186-294 (378)
316 4ej6_A Putative zinc-binding d 91.1 0.24 8.1E-06 43.1 5.0 87 104-197 176-283 (370)
317 3uog_A Alcohol dehydrogenase; 90.3 0.081 2.8E-06 46.0 1.2 88 105-198 184-287 (363)
318 1pqw_A Polyketide synthase; ro 90.3 0.12 4E-06 40.6 2.0 84 106-197 34-136 (198)
319 3fpc_A NADP-dependent alcohol 90.2 0.11 3.9E-06 44.7 2.1 87 104-197 160-265 (352)
320 3g7u_A Cytosine-specific methy 90.1 0.13 4.3E-06 45.2 2.3 57 112-168 3-77 (376)
321 3s2e_A Zinc-containing alcohol 90.0 0.09 3.1E-06 45.1 1.3 88 105-197 161-262 (340)
322 1cdo_A Alcohol dehydrogenase; 89.8 0.33 1.1E-05 42.2 4.8 88 105-197 187-293 (374)
323 3pvc_A TRNA 5-methylaminomethy 89.8 0.3 1E-05 46.2 4.8 66 161-242 170-239 (689)
324 1boo_A Protein (N-4 cytosine-s 89.7 0.35 1.2E-05 41.3 4.8 46 97-144 240-285 (323)
325 1e3j_A NADP(H)-dependent ketos 89.7 0.37 1.2E-05 41.5 4.9 86 105-197 163-270 (352)
326 4b7c_A Probable oxidoreductase 89.5 0.14 4.7E-06 43.9 2.0 95 97-197 136-247 (336)
327 2py6_A Methyltransferase FKBM; 89.4 0.33 1.1E-05 43.0 4.5 36 109-144 225-263 (409)
328 2jhf_A Alcohol dehydrogenase E 89.1 0.41 1.4E-05 41.5 4.8 88 105-197 186-292 (374)
329 1p0f_A NADP-dependent alcohol 88.7 0.34 1.2E-05 42.1 4.0 88 105-197 186-292 (373)
330 4dvj_A Putative zinc-dependent 88.7 0.47 1.6E-05 41.1 4.9 82 110-197 171-269 (363)
331 1v3u_A Leukotriene B4 12- hydr 88.6 0.13 4.5E-06 43.9 1.3 87 105-197 140-243 (333)
332 1e3i_A Alcohol dehydrogenase, 88.6 0.44 1.5E-05 41.4 4.7 88 105-197 190-296 (376)
333 3ps9_A TRNA 5-methylaminomethy 88.1 0.31 1.1E-05 45.9 3.6 68 161-244 178-249 (676)
334 2uyo_A Hypothetical protein ML 88.0 0.65 2.2E-05 39.5 5.2 117 112-230 104-274 (310)
335 4eye_A Probable oxidoreductase 88.0 0.2 6.7E-06 43.1 2.0 87 104-197 153-256 (342)
336 1eg2_A Modification methylase 88.0 0.64 2.2E-05 39.7 5.2 45 97-143 230-274 (319)
337 2fzw_A Alcohol dehydrogenase c 87.9 0.41 1.4E-05 41.5 4.0 88 105-197 185-291 (373)
338 1boo_A Protein (N-4 cytosine-s 87.8 0.064 2.2E-06 46.0 -1.2 25 176-200 62-86 (323)
339 3m6i_A L-arabinitol 4-dehydrog 86.9 1 3.5E-05 38.7 6.0 89 104-197 173-282 (363)
340 1rjw_A ADH-HT, alcohol dehydro 86.6 0.35 1.2E-05 41.4 2.8 86 107-197 161-260 (339)
341 3jv7_A ADH-A; dehydrogenase, n 86.6 0.17 5.7E-06 43.5 0.7 83 107-197 168-269 (345)
342 3ip1_A Alcohol dehydrogenase, 86.5 0.46 1.6E-05 41.8 3.5 38 107-144 210-249 (404)
343 3iht_A S-adenosyl-L-methionine 86.5 3.2 0.00011 31.6 7.5 96 97-199 28-148 (174)
344 1yb5_A Quinone oxidoreductase; 85.6 0.24 8.4E-06 42.7 1.2 87 105-197 165-268 (351)
345 3qwb_A Probable quinone oxidor 85.2 0.32 1.1E-05 41.5 1.8 86 106-197 144-246 (334)
346 1g55_A DNA cytosine methyltran 85.1 0.51 1.7E-05 40.7 3.1 57 112-168 3-74 (343)
347 2b5w_A Glucose dehydrogenase; 84.8 1 3.4E-05 38.8 4.8 83 108-197 164-272 (357)
348 2c0c_A Zinc binding alcohol de 84.8 0.61 2.1E-05 40.3 3.4 87 105-198 158-261 (362)
349 2j3h_A NADP-dependent oxidored 84.7 0.42 1.4E-05 40.9 2.3 87 105-197 150-254 (345)
350 1iz0_A Quinone oxidoreductase; 84.3 0.19 6.5E-06 42.3 -0.1 83 108-197 123-217 (302)
351 2c7p_A Modification methylase 83.7 0.96 3.3E-05 38.8 4.1 58 111-168 11-77 (327)
352 2h6e_A ADH-4, D-arabinose 1-de 83.6 0.11 3.8E-06 44.6 -1.8 85 107-197 168-268 (344)
353 2eih_A Alcohol dehydrogenase; 83.4 0.52 1.8E-05 40.3 2.3 84 107-197 163-264 (343)
354 1xa0_A Putative NADPH dependen 83.0 0.46 1.6E-05 40.3 1.9 85 107-197 145-245 (328)
355 3jyn_A Quinone oxidoreductase; 82.7 0.3 1E-05 41.5 0.5 85 106-198 136-239 (325)
356 2dq4_A L-threonine 3-dehydroge 82.6 0.26 9.1E-06 42.2 0.2 86 106-197 161-261 (343)
357 2d8a_A PH0655, probable L-thre 82.5 0.44 1.5E-05 40.9 1.5 86 106-197 164-266 (348)
358 1vj0_A Alcohol dehydrogenase, 81.3 0.1 3.5E-06 45.6 -3.0 85 108-197 193-297 (380)
359 1jvb_A NAD(H)-dependent alcoho 81.2 0.24 8.2E-06 42.6 -0.7 87 106-197 166-270 (347)
360 1eg2_A Modification methylase 81.0 0.2 6.9E-06 42.9 -1.2 23 177-199 85-107 (319)
361 3nx4_A Putative oxidoreductase 80.7 0.83 2.8E-05 38.6 2.6 79 113-197 149-240 (324)
362 2hwk_A Helicase NSP2; rossman 80.5 1.1 3.8E-05 37.6 3.1 81 118-199 149-255 (320)
363 3tqh_A Quinone oxidoreductase; 79.7 0.69 2.4E-05 39.2 1.8 88 104-197 146-244 (321)
364 1tt7_A YHFP; alcohol dehydroge 79.6 0.92 3.1E-05 38.5 2.5 85 107-197 146-246 (330)
365 3ubt_Y Modification methylase 79.2 3.1 0.00011 35.2 5.7 122 112-239 1-150 (331)
366 4a2c_A Galactitol-1-phosphate 79.1 1.4 4.8E-05 37.5 3.6 91 103-198 153-260 (346)
367 4eez_A Alcohol dehydrogenase 1 79.0 1.2 4.2E-05 37.9 3.2 86 105-197 158-262 (348)
368 3fbg_A Putative arginate lyase 78.8 1.5 5.1E-05 37.5 3.6 83 110-197 150-247 (346)
369 3krt_A Crotonyl COA reductase; 78.4 0.74 2.5E-05 41.2 1.6 39 106-144 224-264 (456)
370 2j8z_A Quinone oxidoreductase; 78.3 0.63 2.2E-05 40.1 1.1 87 105-197 157-260 (354)
371 1wly_A CAAR, 2-haloacrylate re 77.9 0.88 3E-05 38.7 1.9 86 105-197 140-243 (333)
372 2zb4_A Prostaglandin reductase 77.3 1.1 3.8E-05 38.5 2.3 88 104-197 152-259 (357)
373 1qor_A Quinone oxidoreductase; 77.2 0.6 2.1E-05 39.6 0.6 85 105-197 135-238 (327)
374 2cdc_A Glucose dehydrogenase g 77.2 1.1 3.7E-05 38.7 2.3 77 111-197 181-277 (366)
375 3fwz_A Inner membrane protein 77.2 1.9 6.6E-05 31.5 3.4 81 111-198 7-105 (140)
376 4dup_A Quinone oxidoreductase; 76.2 0.59 2E-05 40.3 0.3 88 105-198 162-265 (353)
377 3kpe_B Fusion glycoprotein F0; 75.0 3 0.0001 23.4 2.8 31 158-188 2-32 (39)
378 2km1_A Protein DRE2; yeast, an 72.4 0.69 2.4E-05 34.3 -0.2 40 157-196 54-96 (136)
379 4a0s_A Octenoyl-COA reductase/ 72.4 1.5 5.1E-05 39.0 1.9 39 106-144 216-256 (447)
380 3gaz_A Alcohol dehydrogenase s 70.2 1.2 4.2E-05 38.0 0.8 86 104-197 144-245 (343)
381 3c85_A Putative glutathione-re 69.5 3 0.0001 31.8 2.9 84 110-198 38-139 (183)
382 1zkd_A DUF185; NESG, RPR58, st 68.9 8.5 0.00029 33.7 5.9 34 111-144 81-122 (387)
383 2qrv_A DNA (cytosine-5)-methyl 68.4 5.7 0.0002 33.4 4.6 60 109-168 14-89 (295)
384 4h0n_A DNMT2; SAH binding, tra 65.0 5.2 0.00018 34.2 3.8 56 112-167 4-74 (333)
385 1zsy_A Mitochondrial 2-enoyl t 64.2 11 0.00039 32.0 5.8 85 106-197 163-269 (357)
386 1g2c_B Fusion protein (F); mem 64.0 3.9 0.00013 23.5 1.8 35 155-189 4-38 (43)
387 3gqv_A Enoyl reductase; medium 62.2 4.1 0.00014 35.1 2.6 81 109-197 163-262 (371)
388 4f3n_A Uncharacterized ACR, CO 60.4 12 0.0004 33.3 5.2 34 111-144 138-177 (432)
389 3trk_A Nonstructural polyprote 60.2 2.1 7.2E-05 35.5 0.4 38 161-198 210-259 (324)
390 1uuf_A YAHK, zinc-type alcohol 58.8 7.5 0.00026 33.4 3.7 85 107-197 191-287 (369)
391 4a27_A Synaptic vesicle membra 58.7 2.1 7.2E-05 36.6 0.1 85 105-197 137-237 (349)
392 4e2x_A TCAB9; kijanose, tetron 58.7 12 0.0004 32.6 5.0 85 109-200 317-412 (416)
393 3qv2_A 5-cytosine DNA methyltr 58.5 9.3 0.00032 32.5 4.2 120 110-238 9-166 (327)
394 2vn8_A Reticulon-4-interacting 56.1 1.4 4.8E-05 38.1 -1.5 85 108-197 181-279 (375)
395 3mag_A VP39; methylated adenin 55.2 57 0.002 27.3 8.2 35 110-144 60-99 (307)
396 3pi7_A NADH oxidoreductase; gr 55.1 2.9 9.8E-05 35.7 0.4 19 180-198 245-263 (349)
397 1g60_A Adenine-specific methyl 52.4 11 0.00036 30.8 3.4 22 177-198 53-74 (260)
398 3ius_A Uncharacterized conserv 51.7 26 0.00087 28.2 5.7 53 112-168 6-69 (286)
399 3l9w_A Glutathione-regulated p 51.7 10 0.00035 33.4 3.4 83 111-199 4-103 (413)
400 1wg8_A Predicted S-adenosylmet 51.4 9.7 0.00033 31.8 3.0 37 162-198 197-233 (285)
401 1piw_A Hypothetical zinc-type 50.0 12 0.00041 31.9 3.5 87 106-197 175-275 (360)
402 2raf_A Putative dinucleotide-b 49.7 12 0.00041 29.3 3.2 70 110-198 18-89 (209)
403 3tka_A Ribosomal RNA small sub 49.6 11 0.00038 32.4 3.1 27 172-198 248-274 (347)
404 3slk_A Polyketide synthase ext 48.9 6.8 0.00023 37.7 1.9 85 106-197 341-441 (795)
405 3llv_A Exopolyphosphatase-rela 47.7 23 0.00079 25.3 4.4 42 111-155 6-59 (141)
406 4gua_A Non-structural polyprot 46.7 6.8 0.00023 36.0 1.4 39 160-198 219-269 (670)
407 3orf_A Dihydropteridine reduct 46.6 66 0.0023 25.4 7.4 32 111-144 22-57 (251)
408 2hcy_A Alcohol dehydrogenase 1 42.6 18 0.00062 30.5 3.5 86 107-197 166-268 (347)
409 2g1u_A Hypothetical protein TM 42.4 18 0.00062 26.5 3.1 33 109-144 17-53 (155)
410 3me5_A Cytosine-specific methy 41.3 16 0.00055 32.9 3.0 46 111-156 88-146 (482)
411 4e12_A Diketoreductase; oxidor 40.8 1.7 5.8E-05 36.1 -3.3 32 112-144 5-38 (283)
412 4fgs_A Probable dehydrogenase 40.7 46 0.0016 27.3 5.6 34 110-144 28-64 (273)
413 3lvj_C Sulfurtransferase TUSA; 40.7 74 0.0025 20.7 7.3 58 177-246 23-80 (82)
414 1m6y_A S-adenosyl-methyltransf 40.5 13 0.00045 31.2 2.2 25 174-198 221-245 (301)
415 1zcj_A Peroxisomal bifunctiona 40.3 19 0.00065 32.1 3.3 80 112-196 38-148 (463)
416 3ggo_A Prephenate dehydrogenas 39.3 25 0.00086 29.5 3.8 80 112-195 34-125 (314)
417 3k6j_A Protein F01G10.3, confi 39.2 18 0.00061 32.4 2.9 81 112-197 55-165 (460)
418 4e21_A 6-phosphogluconate dehy 39.1 4.8 0.00016 34.8 -0.8 83 111-196 22-113 (358)
419 2f1k_A Prephenate dehydrogenas 38.6 17 0.00059 29.5 2.6 78 113-198 2-90 (279)
420 3qha_A Putative oxidoreductase 37.7 21 0.00071 29.5 3.0 78 112-196 16-103 (296)
421 3ijr_A Oxidoreductase, short c 36.8 1.5E+02 0.0052 23.9 8.3 33 110-143 46-81 (291)
422 1ks9_A KPA reductase;, 2-dehyd 36.4 13 0.00045 30.2 1.5 82 113-197 2-96 (291)
423 2cf5_A Atccad5, CAD, cinnamyl 36.0 28 0.00094 29.6 3.6 85 107-197 176-274 (357)
424 1jdq_A TM006 protein, hypothet 32.1 1.2E+02 0.0041 20.6 6.8 46 177-233 39-84 (98)
425 3is3_A 17BETA-hydroxysteroid d 32.1 1.9E+02 0.0065 22.9 8.2 21 179-199 133-153 (270)
426 2pv7_A T-protein [includes: ch 31.8 11 0.00039 31.3 0.4 72 112-195 22-96 (298)
427 1vpt_A VP39; RNA CAP, poly(A) 31.2 1.2E+02 0.0043 25.7 6.6 35 110-144 75-114 (348)
428 3zwc_A Peroxisomal bifunctiona 30.5 23 0.0008 33.7 2.4 82 112-198 317-429 (742)
429 3ado_A Lambda-crystallin; L-gu 30.0 13 0.00044 31.6 0.4 87 111-198 6-123 (319)
430 3mog_A Probable 3-hydroxybutyr 29.9 14 0.00047 33.3 0.6 80 112-196 6-118 (483)
431 3hz7_A Uncharacterized protein 29.6 99 0.0034 20.4 4.9 60 177-248 14-74 (87)
432 1h2b_A Alcohol dehydrogenase; 29.5 51 0.0017 27.9 4.2 39 106-144 182-222 (359)
433 3c24_A Putative oxidoreductase 29.5 7.3 0.00025 32.1 -1.2 81 112-195 12-98 (286)
434 1yqd_A Sinapyl alcohol dehydro 29.3 44 0.0015 28.4 3.8 85 108-197 184-281 (366)
435 2ew2_A 2-dehydropantoate 2-red 28.5 38 0.0013 27.7 3.1 82 112-196 4-106 (316)
436 3pxx_A Carveol dehydrogenase; 27.4 2.3E+02 0.0079 22.4 8.2 32 110-142 9-43 (287)
437 3g17_A Similar to 2-dehydropan 27.3 12 0.0004 31.0 -0.3 82 112-196 3-94 (294)
438 3gvx_A Glycerate dehydrogenase 26.8 57 0.0019 27.1 3.9 78 110-196 121-207 (290)
439 4dgs_A Dehydrogenase; structur 25.2 1.5E+02 0.0052 25.0 6.4 76 110-195 170-255 (340)
440 2cuk_A Glycerate dehydrogenase 24.8 81 0.0028 26.3 4.5 35 110-146 143-180 (311)
441 1id1_A Putative potassium chan 24.7 1.7E+02 0.0058 20.8 5.9 84 111-198 3-105 (153)
442 3gpi_A NAD-dependent epimerase 24.4 1.4E+02 0.0049 23.7 6.0 56 111-168 3-69 (286)
443 3r3s_A Oxidoreductase; structu 24.2 2.8E+02 0.0096 22.3 8.2 32 110-142 48-82 (294)
444 4g81_D Putative hexonate dehyd 24.2 2.3E+02 0.008 22.7 7.1 34 110-144 8-44 (255)
445 3grk_A Enoyl-(acyl-carrier-pro 23.9 2.8E+02 0.0097 22.3 9.6 33 110-143 30-67 (293)
446 4b79_A PA4098, probable short- 23.8 1.2E+02 0.004 24.4 5.2 34 110-144 10-46 (242)
447 3vtz_A Glucose 1-dehydrogenase 23.8 1.2E+02 0.004 24.3 5.2 46 109-155 12-64 (269)
448 3uce_A Dehydrogenase; rossmann 23.6 1.6E+02 0.0053 22.6 5.8 20 179-198 97-116 (223)
449 3vrd_B FCCB subunit, flavocyto 23.1 60 0.002 27.6 3.5 34 111-144 2-38 (401)
450 3swr_A DNA (cytosine-5)-methyl 22.8 56 0.0019 32.3 3.5 33 112-144 541-574 (1002)
451 2vz8_A Fatty acid synthase; tr 22.4 10 0.00035 41.4 -1.9 87 105-197 1662-1769(2512)
452 3b1f_A Putative prephenate deh 22.4 54 0.0018 26.6 2.9 33 112-144 7-42 (290)
453 4dio_A NAD(P) transhydrogenase 22.3 70 0.0024 28.0 3.7 35 110-144 189-224 (405)
454 4dkj_A Cytosine-specific methy 22.2 42 0.0014 29.4 2.2 33 112-144 11-49 (403)
455 3tpc_A Short chain alcohol deh 22.1 1.5E+02 0.0053 23.2 5.6 34 110-144 6-42 (257)
456 3evt_A Phosphoglycerate dehydr 22.0 46 0.0016 28.1 2.4 33 110-144 136-171 (324)
457 1lss_A TRK system potassium up 21.7 84 0.0029 21.7 3.6 31 111-144 4-38 (140)
458 4id9_A Short-chain dehydrogena 21.2 1.5E+02 0.0051 24.3 5.6 46 109-156 17-68 (347)
459 3ic5_A Putative saccharopine d 20.6 96 0.0033 20.6 3.6 32 111-144 5-40 (118)
460 1v54_G Cytochrome C oxidase po 20.4 2E+02 0.0068 19.1 5.3 26 13-38 16-41 (85)
461 1je3_A EC005, hypothetical 8.6 20.3 1.6E+02 0.0056 19.9 4.6 42 179-231 42-83 (97)
462 3tzq_B Short-chain type dehydr 20.0 1.8E+02 0.0061 23.1 5.7 34 110-144 10-46 (271)
No 1
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.77 E-value=1.1e-18 Score=143.37 Aligned_cols=142 Identities=19% Similarity=0.155 Sum_probs=112.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
.+.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+. ++.+..+|+.++++++++||+|++
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 113 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMA 113 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEE
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEee
Confidence 45678899999999999999998863 469999999965 467899999999999999999988
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcC-cCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcc
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD-KYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKN 247 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~ 247 (257)
++++|+.++..+++++.++|||||.+++..+...... .......++.+++.+++++.||..+....-......++.+|.
T Consensus 114 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 193 (219)
T 3dh0_A 114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIV 193 (219)
T ss_dssp SCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEECC
T ss_pred hhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEec
Confidence 5999999999999999999999999999876443211 112225578999999999999987776552222345666664
Q ss_pred c
Q 025148 248 A 248 (257)
Q Consensus 248 ~ 248 (257)
.
T Consensus 194 ~ 194 (219)
T 3dh0_A 194 K 194 (219)
T ss_dssp -
T ss_pred c
Confidence 4
No 2
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.76 E-value=6.5e-19 Score=146.85 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=101.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
.++.+|||||||+|.++..+++.+. +|+|+|+|+. ++.+.++|+.+. +++++||+|++ ++++|+.+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC
Confidence 4677999999999999999998765 9999999966 467888998887 56789999988 69999999
Q ss_pred HHHHHHHHH-HhccCCcEEEEEeccCCCc----------C-----------cCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 177 PDKFVMEIE-RTLKPGGVCVLHVALSKRA----------D-----------KYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 177 ~~~~l~~~~-r~LkpgG~l~i~~~~~~~~----------~-----------~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+.++++++. |+|||||++++.+|+.... + .......++..++.+++++.||..+...
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 999999999 9999999999999765421 0 1112256799999999999999766554
No 3
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.76 E-value=2.3e-18 Score=147.30 Aligned_cols=133 Identities=15% Similarity=0.136 Sum_probs=104.9
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC-CCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP-FDDE 161 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~-~~~~ 161 (257)
+..++... ..++.+|||||||+|.++..+++.+ .+|+|+|+|+. ++.++.+|+.+++ ++++
T Consensus 58 l~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 58 LDRVLAEM-GPQKLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHHHT-CSSCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHHHhc-CCCCCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 33443332 3447899999999999999999985 49999999964 3568999999887 7889
Q ss_pred chhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC----------------------cCcCCCCCcCChhHH
Q 025148 162 TFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR----------------------ADKYSANDLFSVKPL 218 (257)
Q Consensus 162 ~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~----------------------~~~y~~~~~~~~~~~ 218 (257)
+||+|++ ++++|+.++.++++++.++|||||++++.+++... ........+++..++
T Consensus 136 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (285)
T 4htf_A 136 PVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQV 215 (285)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHH
T ss_pred CceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHH
Confidence 9999988 59999999999999999999999999998753211 011222356789999
Q ss_pred HHhcccCCcEEEEEe
Q 025148 219 VKLFKRSEMVRVRKV 233 (257)
Q Consensus 219 ~~~f~~~~~~~~~~~ 233 (257)
.+++++.||..+...
T Consensus 216 ~~~l~~aGf~v~~~~ 230 (285)
T 4htf_A 216 YLWLEEAGWQIMGKT 230 (285)
T ss_dssp HHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCceeeee
Confidence 999999999766443
No 4
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.75 E-value=3.2e-18 Score=139.07 Aligned_cols=123 Identities=9% Similarity=0.084 Sum_probs=104.4
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc--cH
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL--YP 177 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~--~~ 177 (257)
+.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.++++|+.++++++++||+|++ ++++|+. ++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGEL 120 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTH
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHH
Confidence 78999999999999999999854 9999999965 678899999999998999999988 5999997 89
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCCcCcC----CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKRADKY----SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y----~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.++++++.++|||||.+++.++.......+ .....++..++.+++.+.||..+....
T Consensus 121 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 121 PDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 999999999999999999998755432221 122457899999999999998766554
No 5
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.74 E-value=2.4e-18 Score=143.70 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=102.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------CCcEEEecCCCC--CCCCCchhHHHH-HHhhccccH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------PPLVIEGDFHRQ--PFDDETFDFEFS-NVFDHALYP 177 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------~~~~~~~d~~~~--~~~~~~fD~V~~-~~l~h~~~~ 177 (257)
++++.+|||||||+|.++..+++.+. +|+|+|+|+. .+.+..+|..+. ++++++||+|+| ++++|+.++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~ 117 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE 117 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGG
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCchhhCCcH
Confidence 46788999999999999999998754 8999999976 467788888775 788899999998 599999955
Q ss_pred --HHHHHHHHHhccCCcEEEEEeccCCCc-------CcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 178 --DKFVMEIERTLKPGGVCVLHVALSKRA-------DKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 178 --~~~l~~~~r~LkpgG~l~i~~~~~~~~-------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
..+++++.++|||||++++.+++.... ........++..++.+++.+.||..+...
T Consensus 118 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 118 RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 899999999999999999999865431 11122356788999999999999866554
No 6
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.74 E-value=4.2e-18 Score=144.59 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=109.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~ 160 (257)
.....++....+.++.+|||||||+|.++..+++....+|+|+|+|+. ++.+..+|+.++++++
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 334444444456788999999999999999998864569999999964 3678899999999999
Q ss_pred CchhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------CcCCCCCcCChhHHHHhcccCC
Q 025148 161 ETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------DKYSANDLFSVKPLVKLFKRSE 226 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------~~y~~~~~~~~~~~~~~f~~~~ 226 (257)
++||+|++ ++++|+.++.++++++.++|||||.+++..+..... ..+....+++..++.+++++.|
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 207 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE 207 (273)
T ss_dssp TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTT
T ss_pred CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcC
Confidence 99999988 599999999999999999999999999987543210 0112345678999999999999
Q ss_pred cEEEEEe
Q 025148 227 MVRVRKV 233 (257)
Q Consensus 227 ~~~~~~~ 233 (257)
|..+...
T Consensus 208 f~~~~~~ 214 (273)
T 3bus_A 208 LVVTSTV 214 (273)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 9876544
No 7
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.74 E-value=4.5e-18 Score=141.69 Aligned_cols=125 Identities=23% Similarity=0.364 Sum_probs=104.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHH-HHhhcc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHA 174 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~ 174 (257)
+.++.+|||||||+|.++..+++.+. +|+|+|+++. ++.++.+|+.++++++++||+|++ ++++|+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 45788999999999999999999854 9999999964 567899999999999999999988 599999
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEeccCCC-------cCcCC---CCCcCChhHHHHhcccCCcEEEEEe
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHVALSKR-------ADKYS---ANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------~~~y~---~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
.++.++++++.++|||||.+++.++.... ...+. ....++..++.+++++.||..+...
T Consensus 130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 99999999999999999999998853321 00111 1144688999999999999877765
No 8
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.74 E-value=3.9e-18 Score=143.95 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=100.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
...++.+|||||||+|.++..+++.+. +|+|+|+|+. ++.+..+|+.++++++++||+|+++ +
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA 112 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhh
Confidence 346788999999999999999998764 9999999964 3678999999999999999999995 9
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------CcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------DKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
++|+.++..+++++.|+|||||++++..+..... ........++..++.+++.+.||..+..
T Consensus 113 l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 187 (260)
T 1vl5_A 113 AHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 187 (260)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred hHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 9999999999999999999999999975432110 0011224568889999999999875443
No 9
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.74 E-value=3e-18 Score=144.51 Aligned_cols=134 Identities=17% Similarity=0.258 Sum_probs=107.1
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHH
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
..++....+.++.+|||||||+|.++..+++....+|+|+|+|+. ++.+..+|+.+.++++++||+|
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 124 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLI 124 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEE
Confidence 333334445778899999999999999999863459999999974 4678999999999999999999
Q ss_pred HH-HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC----------CCCcCChhHHHHhcccCCcEEEEEe
Q 025148 167 FS-NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYS----------ANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 167 ~~-~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~----------~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++ ++++|+ .++..+++++.++|||||.+++..+.......+. ...+++..++.+++.+.||..+...
T Consensus 125 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 125 YSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred eHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 99 599999 8999999999999999999999876433211111 1145689999999999999776654
No 10
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.74 E-value=8.2e-18 Score=137.35 Aligned_cols=125 Identities=13% Similarity=0.040 Sum_probs=94.4
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------------------CCcEEEecCCCCC
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------------------PPLVIEGDFHRQP 157 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------------------~~~~~~~d~~~~~ 157 (257)
...+.++.+|||+|||+|..+..|++.+. +|+|+|+|+. ++.+.++|+.+++
T Consensus 17 ~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 95 (203)
T 1pjz_A 17 SLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 95 (203)
T ss_dssp HHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred hcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence 33456788999999999999999999875 9999999954 3578899999998
Q ss_pred CCC-CchhHHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 158 FDD-ETFDFEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 158 ~~~-~~fD~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
+++ ++||+|++ .+++|+.. ..+++++++|+|||||++++.+..............++.+++.++|.+ +|....
T Consensus 96 ~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~ 172 (203)
T 1pjz_A 96 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTK 172 (203)
T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEE
T ss_pred cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEE
Confidence 875 78999998 48888864 456899999999999985554432211111111233588999999998 876443
No 11
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.73 E-value=5.8e-18 Score=133.73 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=107.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
+.++.+|||+|||+|.++..+++.+. +++|+|+++. ++.+..+| .++++++||+|++ ++++|+.+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~ 90 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDD 90 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccC
Confidence 46778999999999999999998765 9999999965 56777777 6778899999988 59999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcC-cCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcccc
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRAD-KYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAK 249 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~~ 249 (257)
+..+++++.++|||||.+++..+...... .......++.+++.++++ ||..+....-......+++++...
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~ 162 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTS 162 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCC
Confidence 99999999999999999999876443211 111124578999999999 998777665333335677777554
No 12
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.73 E-value=6e-18 Score=145.50 Aligned_cols=127 Identities=26% Similarity=0.338 Sum_probs=104.4
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
.+.++.+|||||||+|.++..+++....+|+|+|+|+. ++.+..+|+.++|+++++||+|++ +
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 45788999999999999999999862349999999965 367899999999999999999988 5
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcC----------cCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD----------KYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~----------~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+++|+.++.++++++.|+|||||.+++..+...... .+....+.+..++.+++.+.||..+...
T Consensus 159 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 159 AFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 999999999999999999999999999976432110 1122245588899999999999876654
No 13
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.73 E-value=1e-17 Score=137.66 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=101.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+. ++.+..+|+.+++++ ++||+|++ ++++|+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~ 121 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTD 121 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCH
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCCh
Confidence 467899999999999999999875 49999999975 578999999999888 89999988 59999999
Q ss_pred HHH--HHHHHHHhccCCcEEEEEeccCCCcC------------c-------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 177 PDK--FVMEIERTLKPGGVCVLHVALSKRAD------------K-------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 177 ~~~--~l~~~~r~LkpgG~l~i~~~~~~~~~------------~-------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+.. +++++.++|||||.+++..+...... . .....+++.+++.+++++.||.......
T Consensus 122 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 200 (220)
T 3hnr_A 122 DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRL 200 (220)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeec
Confidence 887 99999999999999999976433200 0 0111445889999999999996554443
No 14
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.73 E-value=6e-18 Score=142.13 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=103.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.+..+|+.++++++++||+|++ .+++|+.
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 122 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence 478899999999999999999986669999999964 567899999999998999999988 5999999
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCC------CcCcCCCC----------------------------CcCChhHHHHh
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSK------RADKYSAN----------------------------DLFSVKPLVKL 221 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~------~~~~y~~~----------------------------~~~~~~~~~~~ 221 (257)
++.++++++.++|||||.+++.++... ..|.+... +.++..++.++
T Consensus 123 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 202 (253)
T 3g5l_A 123 SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQT 202 (253)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHH
Confidence 999999999999999999999865321 01111100 11288999999
Q ss_pred cccCCcEEEEEec
Q 025148 222 FKRSEMVRVRKVD 234 (257)
Q Consensus 222 f~~~~~~~~~~~~ 234 (257)
++++||..+....
T Consensus 203 l~~aGF~~~~~~e 215 (253)
T 3g5l_A 203 LLKNGFQINSVIE 215 (253)
T ss_dssp HHHTTEEEEEEEC
T ss_pred HHHcCCeeeeeec
Confidence 9999998777664
No 15
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.72 E-value=3.1e-18 Score=146.19 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=101.4
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
...++.+|||||||+|.++..+++. ..+|+|+|+|+. ++.+..+|+.++++ +++||+|++ .+++|+.
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCCCCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhhCc
Confidence 3467889999999999999999984 459999999975 57899999999887 578999988 5999999
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCC---------------cC---cC-CCCCcCChhHHHHhcccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKR---------------AD---KY-SANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------~~---~y-~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
++..+++++.++|||||++++.++.... .+ .+ ....+++..++.+++.+.||..+..
T Consensus 132 d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 207 (279)
T 3ccf_A 132 EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYA 207 (279)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEE
T ss_pred CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEE
Confidence 9999999999999999999998875322 00 01 1114568899999999999876543
No 16
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.72 E-value=1.1e-17 Score=142.07 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=102.7
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
...++++.+|||||||+|..+..+++. +.++|+|+|+|+. ++.++++|+.+++++ .||+
T Consensus 65 ~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~ 142 (261)
T 4gek_A 65 ERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASM 142 (261)
T ss_dssp HHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEE
T ss_pred HHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--cccc
Confidence 445788999999999999999999875 3468999999965 467899999998874 5999
Q ss_pred HHHH-HhhccccH--HHHHHHHHHhccCCcEEEEEeccCCC-----------------cCcCCCC-------------Cc
Q 025148 166 EFSN-VFDHALYP--DKFVMEIERTLKPGGVCVLHVALSKR-----------------ADKYSAN-------------DL 212 (257)
Q Consensus 166 V~~~-~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~-----------------~~~y~~~-------------~~ 212 (257)
|+++ +++|+.++ ..++++++|+|||||++++....... ...|... ..
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~ 222 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLT 222 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCC
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccC
Confidence 9885 99998744 46899999999999999997532110 0011111 23
Q ss_pred CChhHHHHhcccCCcEEEEEec-CCCCceEEEEEcc
Q 025148 213 FSVKPLVKLFKRSEMVRVRKVD-GFGLDTEVVFRKN 247 (257)
Q Consensus 213 ~~~~~~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k~ 247 (257)
++.+++.+++++.||..+.... .+.+. .++-.|.
T Consensus 223 ~s~~~~~~~L~~AGF~~ve~~fq~~nF~-~~iA~K~ 257 (261)
T 4gek_A 223 DSVETHKARLHKAGFEHSELWFQCFNFG-SLVALKA 257 (261)
T ss_dssp BCHHHHHHHHHHHTCSEEEEEEEETTEE-EEEEECC
T ss_pred CCHHHHHHHHHHcCCCeEEEEEEeccEE-EEEEEEc
Confidence 5778889999999998776542 33332 3444443
No 17
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.72 E-value=1.2e-17 Score=144.96 Aligned_cols=125 Identities=15% Similarity=0.089 Sum_probs=102.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
+.++.+|||+|||+|.++..+++....+|+|+|+++. ++.+..+|+.++++++++||+|++ ++
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES 194 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence 5678899999999999999999872359999999965 367899999999999999999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCc-----------CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADK-----------YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----------y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++|+ ++.++++++.++|||||++++.++....... +....+++..++.+++++.||..+...
T Consensus 195 l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 195 TMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp GGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred hhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 9999 6999999999999999999998764332110 111145688999999999999766554
No 18
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.72 E-value=1.8e-18 Score=141.45 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=106.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
..++ +|||+|||+|.++..+++.+..+++|+|+|+. ++.+.++|+.++++++++||+|++ ++
T Consensus 42 ~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 42 ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS 120 (219)
T ss_dssp CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECch
Confidence 3444 99999999999999999875569999999964 467899999999999999999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCC---------------cCcC---CCCCcCChhHHHHhcccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKR---------------ADKY---SANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------~~~y---~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
++|+.++.++++++.++|||||.+++..+.... .|.. .....++.+++.+++++.||..+..
T Consensus 121 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 200 (219)
T 3dlc_A 121 VFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI 200 (219)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred HhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence 999999999999999999999999998643211 0000 1113446789999999999976655
Q ss_pred ecCCCCceEEEEEccc
Q 025148 233 VDGFGLDTEVVFRKNA 248 (257)
Q Consensus 233 ~~gf~~~~~vv~~k~~ 248 (257)
..... ..-++++|+.
T Consensus 201 ~~~~~-~~~~~~~k~~ 215 (219)
T 3dlc_A 201 ILGDE-GFWIIISKTD 215 (219)
T ss_dssp EEETT-EEEEEEBCCS
T ss_pred EecCC-ceEEEEeccc
Confidence 53222 1235556543
No 19
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.72 E-value=2.6e-17 Score=139.11 Aligned_cols=139 Identities=15% Similarity=0.126 Sum_probs=106.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-H-Hhhccc-
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-N-VFDHAL- 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~-~l~h~~- 175 (257)
.++.+|||||||+|.++..+++.+. +|+|+|+|+. ++.++++|+.++++ +++||+|+| . +++|+.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCC
Confidence 5678999999999999999998764 9999999965 57899999999887 788999988 4 999995
Q ss_pred --cHHHHHHHHHHhccCCcEEEEEeccCCC---------------------cC-------------cC------------
Q 025148 176 --YPDKFVMEIERTLKPGGVCVLHVALSKR---------------------AD-------------KY------------ 207 (257)
Q Consensus 176 --~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------------------~~-------------~y------------ 207 (257)
+..++++++.++|||||.+++....... .| .|
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 5567899999999999999996421100 00 00
Q ss_pred C---CCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEcccc
Q 025148 208 S---ANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAK 249 (257)
Q Consensus 208 ~---~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~~ 249 (257)
. ...+|+.+++.++++++||..+.....+.....++.+|...
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a~ 251 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGAK 251 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC-
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCCC
Confidence 0 02457899999999999998776655555445666666544
No 20
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.72 E-value=6.8e-18 Score=141.86 Aligned_cols=130 Identities=19% Similarity=0.149 Sum_probs=103.3
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
++....+.++.+|||||||+|.++..+++....+|+|+|+|+. ++.+.++|+.++++ +++||+
T Consensus 28 l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~ 106 (256)
T 1nkv_A 28 LGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDV 106 (256)
T ss_dssp HHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEE
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCE
Confidence 3334446788999999999999999999864459999999964 47789999999887 789999
Q ss_pred HHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc---------C-cCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 166 EFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA---------D-KYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 166 V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~---------~-~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
|+| ++++|+.++.++++++.++|||||.+++..+..... + ......+++..++.+++.+.||..+..
T Consensus 107 V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 107 AACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp EEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 988 599999999999999999999999999987532110 0 011125668899999999999875543
No 21
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.72 E-value=7.2e-18 Score=141.42 Aligned_cols=135 Identities=17% Similarity=0.078 Sum_probs=104.7
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHH
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
..++......++.+|||||||+|.++..+++.+..+|+|+|+|+. .+.+.++|+.++++++++||+|
T Consensus 83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 162 (254)
T 1xtp_A 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI 162 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEE
T ss_pred HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEE
Confidence 333333344578899999999999999998876558999999865 3577889999999888999999
Q ss_pred HH-HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcC----cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 167 FS-NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRAD----KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 167 ~~-~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~----~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
++ .+++|+ .++.++++++.++|||||++++.++...... .......++.+++.+++++.||..+....
T Consensus 163 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 88 599999 5688999999999999999999886322110 11112345889999999999987666543
No 22
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.71 E-value=7.5e-18 Score=137.77 Aligned_cols=124 Identities=21% Similarity=0.188 Sum_probs=101.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc--
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL-- 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~-- 175 (257)
+.++.+|||+|||+|.++..+++.+. +|+|+|+|+. .+.+..+|+.+++ ++++||+|++ ++++|+.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcCHH
Confidence 45788999999999999999998754 9999999976 5678899999988 7889999998 5999998
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCCcCc---CCCCCcCChhHHHHhcccCC-cEEEEEe
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKRADK---YSANDLFSVKPLVKLFKRSE-MVRVRKV 233 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~---y~~~~~~~~~~~~~~f~~~~-~~~~~~~ 233 (257)
++..+++++.++|||||++++.++....... .....+++.+++.+++++.| |..+...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 7889999999999999999999865432111 11124579999999999999 8665544
No 23
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.71 E-value=9.4e-17 Score=131.56 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=105.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHHH-HhhccccHHHHHHHHHHh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPDKFVMEIERT 187 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~ 187 (257)
.++.+|||||||+|.++..++ .+++|+|+++..+.+..+|+.++++++++||+|++. +++ ..++.++++++.++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~ 140 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTNIRDFLEEANRV 140 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCC-SSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhcc-ccCHHHHHHHHHHh
Confidence 567899999999999988773 599999999999999999999999999999999885 775 48999999999999
Q ss_pred ccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEccccc
Q 025148 188 LKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNAKS 250 (257)
Q Consensus 188 LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~~~ 250 (257)
|||||.+++..+... +.+..++.+++.+.||..+......+....++++|.+..
T Consensus 141 L~~gG~l~i~~~~~~---------~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~~~ 194 (215)
T 2zfu_A 141 LKPGGLLKVAEVSSR---------FEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTGPP 194 (215)
T ss_dssp EEEEEEEEEEECGGG---------CSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEECSSC
T ss_pred CCCCeEEEEEEcCCC---------CCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEecCcc
Confidence 999999999875322 127889999999999987765544333456777776543
No 24
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.71 E-value=3.1e-17 Score=136.91 Aligned_cols=128 Identities=21% Similarity=0.212 Sum_probs=103.9
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
...+.++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+..+|+.++++++++||+|++.
T Consensus 16 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 94 (239)
T 1xxl_A 16 TAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCR 94 (239)
T ss_dssp HHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred HhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEEC
Confidence 44457889999999999999999998764 9999999964 4678899999999999999999995
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------CcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------DKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+++|+.++.++++++.++|||||++++..+..... ........++..++.+++.+.||..+...
T Consensus 95 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~ 172 (239)
T 1xxl_A 95 YAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 172 (239)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEE
Confidence 99999999999999999999999999976432110 00111245688999999999998755443
No 25
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.71 E-value=8.5e-18 Score=142.48 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=103.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
+.++.+|||||||+|.++..+++.+.++|+|+|+|+. ++.+..+|+.++++++++||+|+| ++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 4678999999999999999999987779999999965 378899999999998999999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCC---------cCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKR---------ADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++|+ ++.++++++.++|||||++++..+.... .|......+.+..++.+++.+.||..+...
T Consensus 124 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 124 IYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATF 194 (267)
T ss_dssp GGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred ceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 9999 8999999999999999999998753111 110011245578899999999999876654
No 26
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.70 E-value=1e-17 Score=140.89 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=102.4
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
.++......++.+|||+|||+|.++..+++. +..+++|+|+|+. ++.+..+|+.+++ ++++||+|++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~ 102 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYAN 102 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEE
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEe
Confidence 4443444567889999999999999999886 4569999999965 5788999999988 7889999999
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC--------------cCc--C-----CCCCcCChhHHHHhcccCCc
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR--------------ADK--Y-----SANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~~~--y-----~~~~~~~~~~~~~~f~~~~~ 227 (257)
.+++|+.++..+++++.++|||||.+++.++.... .|. . ....+++..++.+++.+.||
T Consensus 103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 182 (259)
T 2p35_A 103 AVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSS 182 (259)
T ss_dssp SCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGEE
T ss_pred CchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcCC
Confidence 59999999999999999999999999999864311 011 1 12256789999999999998
Q ss_pred E
Q 025148 228 V 228 (257)
Q Consensus 228 ~ 228 (257)
.
T Consensus 183 ~ 183 (259)
T 2p35_A 183 R 183 (259)
T ss_dssp E
T ss_pred c
Confidence 5
No 27
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.70 E-value=1.5e-17 Score=136.88 Aligned_cols=125 Identities=21% Similarity=0.363 Sum_probs=103.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCC--CCCCCCchhHHHH-HHhhccccH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHR--QPFDDETFDFEFS-NVFDHALYP 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~--~~~~~~~fD~V~~-~~l~h~~~~ 177 (257)
.++.+|||+|||+|.++..+++.+ .+++|+|+++. ...+..+|+.+ .++++++||+|++ ++++|+.++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~ 109 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP 109 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence 577899999999999999999885 69999999975 34678889876 6777889999988 599999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCC----------cCcCC--------CCCcCChhHHHHhcccCCcEEEEEec
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKR----------ADKYS--------ANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~----------~~~y~--------~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.++++++.++|||||.+++.+|+... .|.+. ...+++..++.+++.+.||..+....
T Consensus 110 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 184 (230)
T 3cc8_A 110 WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR 184 (230)
T ss_dssp HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEe
Confidence 99999999999999999999876321 22221 11557899999999999997665543
No 28
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.70 E-value=3.1e-17 Score=133.99 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=95.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
..++.+|||+|||+|.++..+ +..+++|+|+|+. ++.+..+|+.++++++++||+|++ ++++|+.+
T Consensus 34 ~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 34 LPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred cCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 347889999999999999887 3338999999965 578889999999999999999988 59999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcC-------------cCCCCCcCChhHHHHhcc
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRAD-------------KYSANDLFSVKPLVKLFK 223 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------------~y~~~~~~~~~~~~~~f~ 223 (257)
+.++++++.++|||||.+++.+++....| .+....+++.+++.++++
T Consensus 111 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 111 VERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG 170 (211)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc
Confidence 99999999999999999999987654311 123346789999999998
No 29
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.70 E-value=1.2e-17 Score=143.09 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=105.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCC-C
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPF-D 159 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~-~ 159 (257)
..+...+....+.++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.+.++|+.+.++ +
T Consensus 51 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 130 (298)
T 1ri5_A 51 NFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL 130 (298)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC
Confidence 344444444456788999999999999999988877669999999965 25788999998888 6
Q ss_pred CCchhHHHH-HHhhc----cccHHHHHHHHHHhccCCcEEEEEeccCCCc-----------------------------C
Q 025148 160 DETFDFEFS-NVFDH----ALYPDKFVMEIERTLKPGGVCVLHVALSKRA-----------------------------D 205 (257)
Q Consensus 160 ~~~fD~V~~-~~l~h----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----------------------------~ 205 (257)
+++||+|++ .+++| ..++.++++++.++|||||.+++.+++.... .
T Consensus 131 ~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 210 (298)
T 1ri5_A 131 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVR 210 (298)
T ss_dssp SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCC
T ss_pred CCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccc
Confidence 889999988 47765 5678899999999999999999998753210 0
Q ss_pred cCC----------CCCcCChhHHHHhcccCCcEEEEEe
Q 025148 206 KYS----------ANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 206 ~y~----------~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
.|. ...+++..++.+++++.||..+...
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~ 248 (298)
T 1ri5_A 211 EYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERK 248 (298)
T ss_dssp EEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred eEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEec
Confidence 010 0145688999999999999766654
No 30
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.70 E-value=2.6e-17 Score=139.30 Aligned_cols=122 Identities=20% Similarity=0.110 Sum_probs=96.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP 177 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~ 177 (257)
..++.+|||||||+|.++..+++.+ .+|+|+|+|+. ++.+.++|+.++++++++||+|++ ++++|+.++
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 110 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHL 110 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSH
T ss_pred CCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccCH
Confidence 4678899999999999999999854 59999999964 467889999999999999999999 599999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCC---cCc--CCC-------CCcCChhHHHHhcccCCcEEEEE
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKR---ADK--YSA-------NDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~---~~~--y~~-------~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
.+++++++++|| ||++++..+.... .|. +.. ..+.+...+. ++++.||..+..
T Consensus 111 ~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~ 175 (261)
T 3ege_A 111 EKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEA 175 (261)
T ss_dssp HHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEE
T ss_pred HHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeE
Confidence 999999999999 9988887654322 111 100 1344566677 888888865443
No 31
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.70 E-value=9.5e-18 Score=151.18 Aligned_cols=151 Identities=15% Similarity=0.188 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEE-----EecCCCCCCCCCch
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVI-----EGDFHRQPFDDETF 163 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~-----~~d~~~~~~~~~~f 163 (257)
.....++....+.++.+|||||||+|.++..+++.+. +|+|+|+|+. ..... ..+...+++++++|
T Consensus 94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~f 172 (416)
T 4e2x_A 94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPA 172 (416)
T ss_dssp HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCE
Confidence 3344444444556788999999999999999999765 9999999965 12222 22333445667899
Q ss_pred hHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCC-------cCcC-CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 164 DFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR-------ADKY-SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 164 D~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------~~~y-~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
|+|++ ++++|+.++..++++++++|||||++++.+|.... ...+ ....+++..++.+++++.||..+....
T Consensus 173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 99998 69999999999999999999999999999875211 1112 223567999999999999997665543
Q ss_pred --CCCCceEEEEEccc
Q 025148 235 --GFGLDTEVVFRKNA 248 (257)
Q Consensus 235 --gf~~~~~vv~~k~~ 248 (257)
.++-+..++.++.+
T Consensus 253 ~~~~~g~l~~~~~~~~ 268 (416)
T 4e2x_A 253 LPVHGGEVRYTLARQG 268 (416)
T ss_dssp ECGGGSEEEEEEEETT
T ss_pred ccCCCCEEEEEEEeCC
Confidence 22323344445443
No 32
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.70 E-value=1.1e-17 Score=140.70 Aligned_cols=125 Identities=20% Similarity=0.222 Sum_probs=102.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
+.++.+|||+|||+|.++..+++....+|+|+|+|+. .+.+.++|+.++++++++||+|++ ++
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence 4677899999999999999999975559999999975 277899999999999999999999 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCC---------cCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKR---------ADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++|+ ++.++++++.++|||||++++..+.... .|.-....+.+..++.+++++.||..+...
T Consensus 124 l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 124 IYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp SCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred Hhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 9999 8999999999999999999998753111 111011235678899999999999877654
No 33
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.69 E-value=4.4e-17 Score=140.93 Aligned_cols=140 Identities=19% Similarity=0.110 Sum_probs=107.4
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHH--HcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALK--RVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~--~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
..+.++.+|||||||+|..+..++ ..+..+|+|+|+|+. .+.++++|+.+++++ ++||+|+
T Consensus 114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~ 192 (305)
T 3ocj_A 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLT 192 (305)
T ss_dssp HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEE
Confidence 345788999999999999999984 345679999999965 267899999999887 8999999
Q ss_pred H-HHhhccccHHH---HHHHHHHhccCCcEEEEEeccCCC------cCc---CC------------------CCCcCChh
Q 025148 168 S-NVFDHALYPDK---FVMEIERTLKPGGVCVLHVALSKR------ADK---YS------------------ANDLFSVK 216 (257)
Q Consensus 168 ~-~~l~h~~~~~~---~l~~~~r~LkpgG~l~i~~~~~~~------~~~---y~------------------~~~~~~~~ 216 (257)
+ .+++|+.++.. +++++.++|||||++++....... .|. +. ...+++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 9 58999988876 699999999999999998743211 111 00 11447899
Q ss_pred HHHHhcccCCcEEEEEec-CCCCceEEEEEc
Q 025148 217 PLVKLFKRSEMVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 217 ~~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k 246 (257)
++.+++++.||..+.... .......++.+|
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 999999999998877764 222234455554
No 34
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.69 E-value=2.3e-17 Score=140.26 Aligned_cols=129 Identities=20% Similarity=0.376 Sum_probs=103.4
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...+.++.+|||||||+|.++..+++. +..+|+|+|+|+. ++.+..+|+.++++++++||+|++
T Consensus 32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 32 DTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV 111 (276)
T ss_dssp TCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred cccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEE
Confidence 334578899999999999999999986 3579999999964 467889999999999999999988
Q ss_pred -HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-------------------CcCCCCCcCChhHHHHhcccCCcE
Q 025148 169 -NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-------------------DKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 169 -~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------------------~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
++++|+.++..+++++.++|||||++++..+..... ........++..++..++++.||.
T Consensus 112 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 112 CFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFE 191 (276)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCE
T ss_pred echhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCC
Confidence 599999999999999999999999999987543210 001111334668899999999997
Q ss_pred EEEEe
Q 025148 229 RVRKV 233 (257)
Q Consensus 229 ~~~~~ 233 (257)
.+...
T Consensus 192 ~v~~~ 196 (276)
T 3mgg_A 192 KIRVE 196 (276)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 66544
No 35
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.69 E-value=9.3e-17 Score=133.19 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=101.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
..++.+|||+|||+|.++..+++. +..+++|+|+|+. ++.++++|+.+.+++ ++||+|++ .+++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIH 120 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccc
Confidence 356789999999999999999986 3569999999965 467899999999887 88999988 5999
Q ss_pred ccccHH--HHHHHHHHhccCCcEEEEEeccCCC-----------------------------cCcCCCCCcCChhHHHHh
Q 025148 173 HALYPD--KFVMEIERTLKPGGVCVLHVALSKR-----------------------------ADKYSANDLFSVKPLVKL 221 (257)
Q Consensus 173 h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~-----------------------------~~~y~~~~~~~~~~~~~~ 221 (257)
|+.++. ++++++.++|||||.+++..+.... .........++.+++.++
T Consensus 121 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 121 HLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 998776 4899999999999999998743211 011122355688999999
Q ss_pred cccCCcEEEEEec
Q 025148 222 FKRSEMVRVRKVD 234 (257)
Q Consensus 222 f~~~~~~~~~~~~ 234 (257)
++++||..+....
T Consensus 201 l~~aGF~~v~~~~ 213 (234)
T 3dtn_A 201 LKEAGFRDVSCIY 213 (234)
T ss_dssp HHHTTCEEEEEEE
T ss_pred HHHcCCCceeeee
Confidence 9999998887664
No 36
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.68 E-value=5.9e-17 Score=134.81 Aligned_cols=126 Identities=16% Similarity=0.193 Sum_probs=101.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
.++.+|||||||+|.++..+++.+..+++|+|+|+. ++.+..+|+.++++++++||+|++ .+++|+.
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 121 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE 121 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc
Confidence 467899999999999999999876559999999965 367889999998888899999988 5999999
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCC------cCc-------------CC--------------CCCcCChhHHHHhc
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKR------ADK-------------YS--------------ANDLFSVKPLVKLF 222 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~------~~~-------------y~--------------~~~~~~~~~~~~~f 222 (257)
++.++++++.++|||||.+++.++.... .|. |. ....++..++.+++
T Consensus 122 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l 201 (243)
T 3bkw_A 122 DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNAL 201 (243)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHH
T ss_pred hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHH
Confidence 9999999999999999999998753210 011 10 00224788999999
Q ss_pred ccCCcEEEEEec
Q 025148 223 KRSEMVRVRKVD 234 (257)
Q Consensus 223 ~~~~~~~~~~~~ 234 (257)
.++||..+....
T Consensus 202 ~~aGF~~~~~~~ 213 (243)
T 3bkw_A 202 IRSGFAIEHVEE 213 (243)
T ss_dssp HHTTCEEEEEEE
T ss_pred HHcCCEeeeecc
Confidence 999998766554
No 37
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.68 E-value=9.7e-17 Score=133.51 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=101.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-H-Hhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-N-VFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~-~l~ 172 (257)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+. .+.+.++|+.+++++ ++||+|++ . +++
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccc
Confidence 367899999999999999999876 48999999965 477889999988877 78999988 5 999
Q ss_pred cc---ccHHHHHHHHHHhccCCcEEEEEeccCCC-------------------cCc---------------------C--
Q 025148 173 HA---LYPDKFVMEIERTLKPGGVCVLHVALSKR-------------------ADK---------------------Y-- 207 (257)
Q Consensus 173 h~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------------~~~---------------------y-- 207 (257)
|+ .++.++++++.++|||||.+++.++.... .|. |
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 99 67888999999999999999998754211 000 0
Q ss_pred ----CCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 208 ----SANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 208 ----~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
....+|+.+++.++++++||..+.....|
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~ 226 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCY 226 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESS
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEccc
Confidence 00145699999999999999887776543
No 38
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.68 E-value=1.9e-17 Score=140.18 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=78.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHHH-HhhccccHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYPD 178 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~~ 178 (257)
..+++|||||||+|..+..|++.+. +|+|+|+|+. ++.+.+++++++++++++||+|+|. ++||+ ++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHh-hHH
Confidence 4567999999999999999998764 9999999965 5688999999999999999999884 88665 688
Q ss_pred HHHHHHHHhccCCcEEEEEec
Q 025148 179 KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++++++|+|||||+|++...
T Consensus 116 ~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 116 RFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEEC
Confidence 999999999999999988764
No 39
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.68 E-value=2.7e-16 Score=128.55 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=98.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCchhHHHH-HHhhccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~ 175 (257)
+.++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.+..+|+.++ +++++||+|++ ++++|+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCC
Confidence 5677899999999999999999885 49999999964 577899999888 78899999988 5999999
Q ss_pred cH--HHHHHHHHHhccCCcEEEEEeccCCCcC---cC------------C-------CCCcCChhHHHHhcccCCcEEEE
Q 025148 176 YP--DKFVMEIERTLKPGGVCVLHVALSKRAD---KY------------S-------ANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 176 ~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~---~y------------~-------~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++ ..+++++.++|||||.+++..+...... .+ . ...+++..++.+++++.||....
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 201 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSV 201 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEe
Confidence 86 7899999999999999999875432100 00 0 01356899999999999997433
No 40
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.67 E-value=1.2e-16 Score=136.66 Aligned_cols=132 Identities=20% Similarity=0.159 Sum_probs=101.5
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCc
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~ 162 (257)
...++....+.++.+|||||||+|.++..+++....+|+|+|+|+. .+.+..+|+.+++ ++
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~ 129 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EP 129 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CC
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CC
Confidence 3333334445778899999999999999998542349999999955 3567888887765 78
Q ss_pred hhHHHH-HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcC-----------------------cCCCCCcCChh
Q 025148 163 FDFEFS-NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRAD-----------------------KYSANDLFSVK 216 (257)
Q Consensus 163 fD~V~~-~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----------------------~y~~~~~~~~~ 216 (257)
||+|++ ++++|+ .++..+++++.++|||||.+++.++...... .+....+++..
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 209 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHH
Confidence 999988 599999 6889999999999999999999876432200 11223456899
Q ss_pred HHHHhcccCCcEEEEEe
Q 025148 217 PLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 217 ~~~~~f~~~~~~~~~~~ 233 (257)
++.+++++.||..+...
T Consensus 210 ~~~~~l~~aGf~~~~~~ 226 (287)
T 1kpg_A 210 MVQECASANGFTVTRVQ 226 (287)
T ss_dssp HHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHhCCcEEEEEE
Confidence 99999999999766654
No 41
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.67 E-value=1.6e-16 Score=130.59 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=94.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC--------------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
.++.+|||||||+|.++..+++.+ ..+|+|+|+|+. ++.+..+|+...+.++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 467899999999999999999864 369999999965 36788999988888888999998
Q ss_pred H-HHhhccccH--HHHHHHHHHhccCCcEEEEEeccCCCcCcC-----------CCCCcCChhHHH----HhcccCCcEE
Q 025148 168 S-NVFDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRADKY-----------SANDLFSVKPLV----KLFKRSEMVR 229 (257)
Q Consensus 168 ~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y-----------~~~~~~~~~~~~----~~f~~~~~~~ 229 (257)
+ ++++|+.++ .++++++.++|||||++ +.+++......| .....++..++. +++.+.|+..
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVI-VSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV 186 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEE-EEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEE-EEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence 8 599999976 68999999999999954 445443221111 111345888888 7788889855
Q ss_pred EEE
Q 025148 230 VRK 232 (257)
Q Consensus 230 ~~~ 232 (257)
...
T Consensus 187 ~~~ 189 (219)
T 3jwg_A 187 RFL 189 (219)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 42
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.67 E-value=1.5e-16 Score=132.12 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=96.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.+.++|+.+.+ ++++||+|++ ++++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCCCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 34599999999999999998754 58999999965 2678899999877 4568999998 5999
Q ss_pred ccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 173 HAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 173 h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
|+. ++.++++++.++|||||.+++........ .......++..++..++.+.||..+...
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDH-VGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC-CSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc-CCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 998 88999999999999999999876533211 1111234689999999999999876654
No 43
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.67 E-value=1e-16 Score=130.42 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=97.3
Q ss_pred CCCCCeEEEECCCCCHHH-HHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 108 LSNESKALCIGARVGQEV-EALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~-~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
..++.+|||+|||+|..+ ..+++.+ .+|+|+|+|+. ++.+.++|+.++++++++||+|++ +++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 356789999999999984 4454444 59999999964 478899999999998899999988 589
Q ss_pred hcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcC----------cCC--------CCCcCChhHHHHhcccCCcEEEE
Q 025148 172 DHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRAD----------KYS--------ANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 172 ~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~----------~y~--------~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
+|+ .++.++++++.++|||||.+++.++...... .|. ...+++.+++.++|.+.++....
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 999 6888999999999999999999875432110 010 01467888999999999986554
Q ss_pred E
Q 025148 232 K 232 (257)
Q Consensus 232 ~ 232 (257)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 4
No 44
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.67 E-value=6.3e-17 Score=133.73 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=101.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
++++.+|||+|||+|.++..+++.+. +|+|+|+++. .+.+..+|+.++++++++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 46788999999999999999999854 9999999964 14788999999999899999998
Q ss_pred H-HHhhccccHH---HHHHHHHHhccCCcEEEEEeccCCCc------------------CcC-----------CCCCcCC
Q 025148 168 S-NVFDHALYPD---KFVMEIERTLKPGGVCVLHVALSKRA------------------DKY-----------SANDLFS 214 (257)
Q Consensus 168 ~-~~l~h~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~------------------~~y-----------~~~~~~~ 214 (257)
+ .+++|+.++. ++++++.++|||||.+++..+..... ..+ .....++
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 8 5999999988 89999999999999999987532210 000 0014578
Q ss_pred hhHHHHhcccCCcEEEEEe
Q 025148 215 VKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 215 ~~~~~~~f~~~~~~~~~~~ 233 (257)
.+++.++++++||..+...
T Consensus 187 ~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp HHHHHHHHHTTTEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEE
Confidence 9999999999999876654
No 45
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.66 E-value=2e-16 Score=136.54 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=103.0
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~ 160 (257)
.+..++....+.++.+|||||||+|.++..+++. + .+|+|+|+|+. ++.+..+|+.++ +
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~ 135 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D 135 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C
Confidence 3444444555678899999999999999999987 6 69999999965 356888888776 6
Q ss_pred CchhHHHH-HHhhccccH---------HHHHHHHHHhccCCcEEEEEeccCCCcC-----------------------cC
Q 025148 161 ETFDFEFS-NVFDHALYP---------DKFVMEIERTLKPGGVCVLHVALSKRAD-----------------------KY 207 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~~~~---------~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----------------------~y 207 (257)
++||+|++ .+++|+.++ ..+++++.++|||||.+++..+...... .+
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 88999998 599999766 7899999999999999999875432100 11
Q ss_pred CCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 208 SANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 208 ~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
....+.+..++.+++++.||..+...
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~ 241 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYH 241 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEE
Confidence 22255688899999999998765544
No 46
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.66 E-value=3e-16 Score=130.22 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=102.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHH--HHhhccc-
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFS--NVFDHAL- 175 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~--~~l~h~~- 175 (257)
.++.+|||+|||+|.++..+++.+. +++|+|+|+. ++.+..+|+.++++ +++||+|+| ++++|+.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 5678999999999999999998754 8999999975 47889999998887 678999984 4999994
Q ss_pred --cHHHHHHHHHHhccCCcEEEEEeccCCCcC--c--------------------------------C---C--------
Q 025148 176 --YPDKFVMEIERTLKPGGVCVLHVALSKRAD--K--------------------------------Y---S-------- 208 (257)
Q Consensus 176 --~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~--------------------------------y---~-------- 208 (257)
+..++++++.++|||||.+++..+...... . | .
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 557899999999999999999864322100 0 0 0
Q ss_pred ----CCCcCChhHHHHhcccCCcEEEEEec-CCCCceEEEEEc
Q 025148 209 ----ANDLFSVKPLVKLFKRSEMVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 209 ----~~~~~~~~~~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k 246 (257)
...+|+.+++.++++++||. +.... +++....++.+|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~-v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLR-VEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEE-EEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCE-EEEeEcCCCCceEEEEec
Confidence 00457899999999999994 55554 444334555554
No 47
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.66 E-value=3.2e-16 Score=129.01 Aligned_cols=119 Identities=24% Similarity=0.396 Sum_probs=100.0
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHHHH-HHhhccccHHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPDKFV 181 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~~~l 181 (257)
+.+|||+|||+|.++..+++. +|+|+|+. .+.+..+|+.++++++++||+|++ ++++|+.++.+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l 122 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERAL 122 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHHH
Confidence 789999999999999988663 99999976 578899999999988899999988 5999999999999
Q ss_pred HHHHHhccCCcEEEEEeccCCCc------------CcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 182 MEIERTLKPGGVCVLHVALSKRA------------DKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i~~~~~~~~------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+++.++|||||.+++.++..... ..+....+++..++.+++.+.||..+....
T Consensus 123 ~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 123 KEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp HHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 99999999999999998654321 112233567999999999999998766554
No 48
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.66 E-value=8.2e-17 Score=143.75 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=100.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-----------------------CCcEEEecCCCC------
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-----------------------PPLVIEGDFHRQ------ 156 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-----------------------~~~~~~~d~~~~------ 156 (257)
+.++.+|||||||+|.++..+++. +..+|+|+|+|+. ++.++.+|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 357889999999999999999885 4569999999853 467889999887
Q ss_pred CCCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCC-----------cCcCCCCCcCChhHHHHhccc
Q 025148 157 PFDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKR-----------ADKYSANDLFSVKPLVKLFKR 224 (257)
Q Consensus 157 ~~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-----------~~~y~~~~~~~~~~~~~~f~~ 224 (257)
++++++||+|+++ +++|+.++.+++++++|+|||||++++..+.... .+.......++..++.+++.+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 8899999999995 9999999999999999999999999998653321 011112244678999999999
Q ss_pred CCcEEEE
Q 025148 225 SEMVRVR 231 (257)
Q Consensus 225 ~~~~~~~ 231 (257)
.||..+.
T Consensus 241 aGF~~v~ 247 (383)
T 4fsd_A 241 AGFRDVR 247 (383)
T ss_dssp TTCCCEE
T ss_pred CCCceEE
Confidence 9986553
No 49
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.66 E-value=2.9e-17 Score=137.18 Aligned_cols=125 Identities=13% Similarity=0.148 Sum_probs=100.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-HHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h 173 (257)
++.+|||||||+|.++..+++.+..+|+|+|+|+. .+.+..+|+.++++++++||+|++ .+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 57899999999999999988876669999999965 256889999988888889999988 59999
Q ss_pred cccHH--HHHHHHHHhccCCcEEEEEeccCCCcCcC---CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 174 ALYPD--KFVMEIERTLKPGGVCVLHVALSKRADKY---SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 174 ~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~y---~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+.++. ++++++.++|||||++++..+.......+ ......+..++.+++.+.||..+....
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 224 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence 98865 89999999999999999987643321111 111234788999999999997666553
No 50
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.66 E-value=3.5e-16 Score=126.08 Aligned_cols=114 Identities=20% Similarity=0.227 Sum_probs=92.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH-HHhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS-NVFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~ 172 (257)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+. ++.+..+|+.+.++ +++||+|++ ++++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGG
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhh
Confidence 467899999999999999999875 49999999964 46788999998887 789999988 5999
Q ss_pred ccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC--CCCcCChhHHHHhccc
Q 025148 173 HAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYS--ANDLFSVKPLVKLFKR 224 (257)
Q Consensus 173 h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~--~~~~~~~~~~~~~f~~ 224 (257)
|+. ++.++++++.++|||||.+++..+.....+... ....++.+++.++|.+
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG 164 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC
Confidence 987 788999999999999999888765433222211 2245689999999987
No 51
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.66 E-value=4.8e-16 Score=124.54 Aligned_cols=120 Identities=19% Similarity=0.281 Sum_probs=100.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH--Hhhccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN--VFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~~ 175 (257)
+.++.+|||+|||+|.++..+++.+ .+++|+|+++. ++.+..+|+.+.++++++||+|+++ +++|+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 5678899999999999999999875 49999999975 5788999999988888899999884 788874
Q ss_pred --cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 176 --YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 176 --~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
+..++++++.++|||||.+++.++... .++..++.+++.+.|+........+.
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~~---------~~~~~~~~~~l~~~Gf~~~~~~~~~~ 177 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAGR---------GWVFGDFLEVAERVGLELENAFESWD 177 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETTS---------SCCHHHHHHHHHHHTEEEEEEESSTT
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCCC---------CcCHHHHHHHHHHcCCEEeeeecccc
Confidence 557899999999999999999886432 14788999999999998777655433
No 52
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.65 E-value=1.7e-16 Score=133.93 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=90.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------------------------CCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------------------------PPLVIEGDFHRQ 156 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------------------------~~~~~~~d~~~~ 156 (257)
.++.+|||+|||+|..+..|++.|. +|+|+|+|+. ++.+.++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 5678999999999999999999876 9999999954 135788999998
Q ss_pred CCCC-CchhHHHHH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 157 PFDD-ETFDFEFSN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 157 ~~~~-~~fD~V~~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
++++ ++||+|++. +++|+. +..++++++.++|||||++++.+........-.....++.+++.++|.+ +|..
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v 221 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSM 221 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEE
Confidence 8765 899999984 888886 3457899999999999999765432211111111233688999999987 3543
No 53
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.65 E-value=1.8e-16 Score=130.20 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=94.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.+.++|+...+.++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 46789999999999999999986 4469999999965 36788899888787778999998
Q ss_pred H-HHhhccccH--HHHHHHHHHhccCCcEEEEEeccCCC----------cCc-CCCCCcCChhHHH----HhcccCCcEE
Q 025148 168 S-NVFDHALYP--DKFVMEIERTLKPGGVCVLHVALSKR----------ADK-YSANDLFSVKPLV----KLFKRSEMVR 229 (257)
Q Consensus 168 ~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~----------~~~-y~~~~~~~~~~~~----~~f~~~~~~~ 229 (257)
+ ++++|+.++ .++++++.++|||||++++.. +... ... ......++..++. +++.+.|+..
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v 186 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP-NIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNV 186 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE-BHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEE
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc-CcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceE
Confidence 8 599999876 789999999999999666543 2211 000 1111346888888 8888999865
Q ss_pred EEE
Q 025148 230 VRK 232 (257)
Q Consensus 230 ~~~ 232 (257)
...
T Consensus 187 ~~~ 189 (217)
T 3jwh_A 187 QFQ 189 (217)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
No 54
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.64 E-value=2.6e-16 Score=128.95 Aligned_cols=93 Identities=23% Similarity=0.176 Sum_probs=80.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-HHhhc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-NVFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h 173 (257)
..++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+.++|+.+.+ ++++||+|++ ++++|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHh
Confidence 35678999999999999999998764 9999999965 4678999999988 6789999998 59999
Q ss_pred cccH---HHHHHHHHHhccCCcEEEEEeccCC
Q 025148 174 ALYP---DKFVMEIERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 174 ~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~ 202 (257)
+.++ .++++++.++|||||.+++.++...
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 158 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 9988 4679999999999999999886543
No 55
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.64 E-value=4.4e-17 Score=138.15 Aligned_cols=126 Identities=14% Similarity=0.014 Sum_probs=93.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCC-----------------------------------------
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPP----------------------------------------- 146 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~----------------------------------------- 146 (257)
..++.+|||||||+|.++..++..+..+|+|+|+|+.++
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 356789999999999888777766655899999996411
Q ss_pred ----cEEEecCCCC-CC---CCCchhHHHHH-Hhhcc----ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcC----CC
Q 025148 147 ----LVIEGDFHRQ-PF---DDETFDFEFSN-VFDHA----LYPDKFVMEIERTLKPGGVCVLHVALSKRADKY----SA 209 (257)
Q Consensus 147 ----~~~~~d~~~~-~~---~~~~fD~V~~~-~l~h~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y----~~ 209 (257)
.+.++|+.+. |+ .+++||+|++. ++||+ .+..+++++++|+|||||.|++........... ..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 1678888773 43 35789999995 88886 466789999999999999999987533211000 01
Q ss_pred CCcCChhHHHHhcccCCcEEEEEe
Q 025148 210 NDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 210 ~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
...++.+++.+.+.+.||..+...
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~ 236 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLL 236 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEe
Confidence 134588999999999998765543
No 56
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=135.16 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=98.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------------------------------
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------------------------------- 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------------------------------- 144 (257)
++.+|||||||+|.++..+++. +..+|+|+|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 5789999999999999999986 5669999999853
Q ss_pred -----------------------------CCcEEEecCCCCC-----CCCCchhHHHH-HHhhccc------cHHHHHHH
Q 025148 145 -----------------------------PPLVIEGDFHRQP-----FDDETFDFEFS-NVFDHAL------YPDKFVME 183 (257)
Q Consensus 145 -----------------------------~~~~~~~d~~~~~-----~~~~~fD~V~~-~~l~h~~------~~~~~l~~ 183 (257)
++.+.++|+...+ +.+++||+|+| ++++|+. ++.+++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 3566777776544 56789999999 5887764 77889999
Q ss_pred HHHhccCCcEEEEEeccCCCc-----------CcCCCCCcCChhHHHHhccc--CCcEEEEEec-------CCCCceEEE
Q 025148 184 IERTLKPGGVCVLHVALSKRA-----------DKYSANDLFSVKPLVKLFKR--SEMVRVRKVD-------GFGLDTEVV 243 (257)
Q Consensus 184 ~~r~LkpgG~l~i~~~~~~~~-----------~~y~~~~~~~~~~~~~~f~~--~~~~~~~~~~-------gf~~~~~vv 243 (257)
++++|||||+|++....-+.. ..|.. -.+.++++..++.+ .||..+..+. ||. ....+
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~-~~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g~~-r~i~~ 283 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYR-IQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQ-RPVYL 283 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHH-CCCCGGGHHHHHTSTTTCCCEEEEC------------CCCEE
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhc-EEEcHHHHHHHHHhcCCCceEEEEeccCCCCCCCcc-ceEEE
Confidence 999999999999975421100 00100 12357889999998 8997665543 444 24566
Q ss_pred EEccc
Q 025148 244 FRKNA 248 (257)
Q Consensus 244 ~~k~~ 248 (257)
++|+.
T Consensus 284 ~~k~~ 288 (292)
T 3g07_A 284 FHKAR 288 (292)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 67653
No 57
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.63 E-value=5.5e-16 Score=127.25 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=97.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCC---CCCC-CchhHHHHH-Hhhcc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQ---PFDD-ETFDFEFSN-VFDHA 174 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~---~~~~-~~fD~V~~~-~l~h~ 174 (257)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+. ...+..+++.++ ++.. ++||+|+++ +++ .
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~ 128 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H 128 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h
Confidence 4568999999999999999998854 9999999975 456777777766 5444 459999985 777 7
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEeccCCCcC--------------cC------CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLHVALSKRAD--------------KY------SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--------------~y------~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.++..++++++++|||||++++.++...... .+ ....+++.+++.++++++||..+....
T Consensus 129 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 129 QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 8999999999999999999999986432210 00 011345899999999999998777554
No 58
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.63 E-value=1.6e-16 Score=136.25 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------CCcEEEecCCCCC---CCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------PPLVIEGDFHRQP---FDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~---~~~~~fD~V 166 (257)
.++.+|||||||+|.++..+++.+. +|+|+|+|+. .+.+..+|+.+++ +++++||+|
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence 4678999999999999999999865 9999999965 3456788888877 788999999
Q ss_pred HH--HHhhcccc-------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 167 FS--NVFDHALY-------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 167 ~~--~~l~h~~~-------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+| ++++|+.+ +.+++++++++|||||++++.+++
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 87 59999999 999999999999999999999864
No 59
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.62 E-value=2.6e-15 Score=127.39 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=100.7
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------------CCcEEEec---C
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------------PPLVIEGD---F 153 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------------~~~~~~~d---~ 153 (257)
.++....+.++.+|||||||+|.++..+++. + ..+|+|+|+|+. ++.+..+| .
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence 3333444678899999999999999999986 3 369999999973 35677777 4
Q ss_pred CCCCCCCCchhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc-----------------------CcCCC
Q 025148 154 HRQPFDDETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA-----------------------DKYSA 209 (257)
Q Consensus 154 ~~~~~~~~~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----------------------~~y~~ 209 (257)
..+++++++||+|++ ++++|+.++..+++.+.++++|||.+++........ .....
T Consensus 114 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T 3bkx_A 114 DLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANI 193 (275)
T ss_dssp CCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSC
T ss_pred ccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccc
Confidence 455778899999988 599999999987777777777899999986432110 01111
Q ss_pred CCcCChhHHHHhcccCCcEEEEEec
Q 025148 210 NDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 210 ~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
..+++..++.++++++||..+....
T Consensus 194 ~~~~s~~~l~~~l~~aGf~~~~~~~ 218 (275)
T 3bkx_A 194 RTLITPDTLAQIAHDNTWTYTAGTI 218 (275)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEECCC
T ss_pred cccCCHHHHHHHHHHCCCeeEEEEE
Confidence 2467899999999999998766543
No 60
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.62 E-value=6.9e-16 Score=133.98 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=100.4
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDE 161 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~ 161 (257)
...++....+.++.+|||||||+|.++..+++. + .+|+|+|+|+. .+.+..+|+.+++ +
T Consensus 79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~ 154 (318)
T 2fk8_A 79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---E 154 (318)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---C
T ss_pred HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---C
Confidence 333333444577889999999999999999986 5 49999999965 2577888887764 6
Q ss_pred chhHHHH-HHhhcc--ccHHHHHHHHHHhccCCcEEEEEeccCCCcC-----------------------cCCCCCcCCh
Q 025148 162 TFDFEFS-NVFDHA--LYPDKFVMEIERTLKPGGVCVLHVALSKRAD-----------------------KYSANDLFSV 215 (257)
Q Consensus 162 ~fD~V~~-~~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----------------------~y~~~~~~~~ 215 (257)
+||+|++ ++++|+ .++.++++++.++|||||.+++.++...... .+....+.+.
T Consensus 155 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 234 (318)
T 2fk8_A 155 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 234 (318)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred CcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCH
Confidence 8999988 599999 6889999999999999999999886543211 1122355688
Q ss_pred hHHHHhcccCCcEEEE
Q 025148 216 KPLVKLFKRSEMVRVR 231 (257)
Q Consensus 216 ~~~~~~f~~~~~~~~~ 231 (257)
.++.+++++.||..+.
T Consensus 235 ~~~~~~l~~aGf~~~~ 250 (318)
T 2fk8_A 235 EMMVEHGEKAGFTVPE 250 (318)
T ss_dssp HHHHHHHHHTTCBCCC
T ss_pred HHHHHHHHhCCCEEEE
Confidence 9999999999886544
No 61
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.62 E-value=7.3e-16 Score=129.68 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=97.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.+.++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.+..+|+.++++++++||+|++ .++
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 35678899999999999999999875 59999999864 467889999999998999999988 599
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCC--C-------------cCcCC---CCCcCChhHHHHhcccCCcEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSK--R-------------ADKYS---ANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~--~-------------~~~y~---~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
+|+.++.++++++.++|||||.+++..+... . ...+. ....++..++.+++.+.||...
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 191 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPR 191 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999998743221 0 00011 1124467778888888887633
No 62
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.8e-16 Score=135.35 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=80.5
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHH--cCCCcEEEecCCCC-----------------CCcEEEecCCCCCCCC-----
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKR--VGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPFDD----- 160 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~~~----- 160 (257)
.....++.+|||||||+|..+..+++ .+..+|+|+|+|+. ++.++++|+.++++++
T Consensus 31 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 110 (299)
T 3g5t_A 31 EYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110 (299)
T ss_dssp HHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTT
T ss_pred HHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccccc
Confidence 33346789999999999999999996 35679999999863 5678899999998887
Q ss_pred -CchhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 161 -ETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 161 -~~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
++||+|++ .+++|+ ++.++++++.++|||||.+++.
T Consensus 111 ~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp SSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 89999998 599999 9999999999999999999984
No 63
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.61 E-value=1.3e-16 Score=136.90 Aligned_cols=124 Identities=18% Similarity=0.065 Sum_probs=90.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCC-------------------------------------------
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPP------------------------------------------- 146 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~------------------------------------------- 146 (257)
++.+|||||||+|.....++..+..+|+|+|+|+.++
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 6789999999999965544444445999999997622
Q ss_pred --cEEEecCCC-CCC-----CCCchhHHHHH-Hhhc----cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC----C
Q 025148 147 --LVIEGDFHR-QPF-----DDETFDFEFSN-VFDH----ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYS----A 209 (257)
Q Consensus 147 --~~~~~d~~~-~~~-----~~~~fD~V~~~-~l~h----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~----~ 209 (257)
.++.+|+.+ +|+ ++++||+|+|+ +++| +.++.+++++++|+|||||++++............ .
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~ 230 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 230 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence 133447776 553 45679999995 9999 67889999999999999999999753222110000 1
Q ss_pred CCcCChhHHHHhcccCCcEEEEEe
Q 025148 210 NDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 210 ~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
...++.+++.+++.+.||..+...
T Consensus 231 ~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 231 VVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eccCCHHHHHHHHHHcCCeEEEee
Confidence 245689999999999999765543
No 64
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.61 E-value=1.2e-15 Score=126.90 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=100.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-H-Hh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-N-VF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~-~l 171 (257)
+.++.+|||+|||+|.++..+++. .+++|+|+|+. ++.+..+|+.+.+++ ++||+|++ . ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCch
Confidence 456789999999999999999887 69999999964 468889999888876 78999987 3 89
Q ss_pred hcc---ccHHHHHHHHHHhccCCcEEEEEeccCCC-------------------cCc-----------------------
Q 025148 172 DHA---LYPDKFVMEIERTLKPGGVCVLHVALSKR-------------------ADK----------------------- 206 (257)
Q Consensus 172 ~h~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-------------------~~~----------------------- 206 (257)
+|+ .++.++++++.++|||||.+++.++.... .|.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDG 187 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTS
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCC
Confidence 998 46678899999999999999997653210 000
Q ss_pred -CC------CCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 207 -YS------ANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 207 -y~------~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
|. ....++.+++.++++++||..+.....|.
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 225 (243)
T 3d2l_A 188 RYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFK 225 (243)
T ss_dssp CEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTS
T ss_pred ceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcc
Confidence 00 01357999999999999998887766554
No 65
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.61 E-value=8e-16 Score=131.68 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=99.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
+.++.+|||||||+|.++..+++. + ..+|+|+|+|+. ++.+.++|+.+++++ ++||+|++ .+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 98 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAF 98 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECCh
Confidence 467889999999999999999886 3 369999999965 467889999998884 68999998 59
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEecc-----CCC-cC---------------------cCCCCCcCChhHHHHhcc
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVAL-----SKR-AD---------------------KYSANDLFSVKPLVKLFK 223 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~-----~~~-~~---------------------~y~~~~~~~~~~~~~~f~ 223 (257)
++|+.++.+++++++++|||||++++..+. ... .+ ......+....++.++++
T Consensus 99 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 178 (284)
T 3gu3_A 99 LLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLS 178 (284)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHH
Confidence 999999999999999999999999998875 110 00 000113445677889999
Q ss_pred cCCcEEEEEe
Q 025148 224 RSEMVRVRKV 233 (257)
Q Consensus 224 ~~~~~~~~~~ 233 (257)
++||..+...
T Consensus 179 ~aGF~~v~~~ 188 (284)
T 3gu3_A 179 ELGVKNIECR 188 (284)
T ss_dssp HTTCEEEEEE
T ss_pred HcCCCeEEEE
Confidence 9999877664
No 66
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.61 E-value=3.3e-15 Score=122.95 Aligned_cols=92 Identities=26% Similarity=0.375 Sum_probs=80.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-H--
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-V-- 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~-- 170 (257)
+.++.+|||+|||+|.++..+++.+. +++|+|+|+. ++.+..+|+.++++++++||+|+++ +
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 35588999999999999999998765 9999999964 5788999999988888899999884 6
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++|..++.++++++.++|||||.+++..+.
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 667778899999999999999999998764
No 67
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.61 E-value=1e-15 Score=129.31 Aligned_cols=91 Identities=24% Similarity=0.258 Sum_probs=79.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhcc-ccH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHA-LYP 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~-~~~ 177 (257)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+. ...+..+|+.++++++++||+|++ ++++|+ .++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~ 131 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK 131 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred CCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccccH
Confidence 377899999999999999999875 49999999975 123889999999998999999988 456665 789
Q ss_pred HHHHHHHHHhccCCcEEEEEecc
Q 025148 178 DKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
.++++++.++|||||.+++.+++
T Consensus 132 ~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 132 DKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999999998865
No 68
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.60 E-value=1.2e-15 Score=123.63 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=93.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHHHhhcc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~ 174 (257)
.++ +|||+|||+|.++..+++.+. +|+|+|+|+. ++.+..+|+.+.++++++||+|++. +.|+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~-~~~~ 105 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI-FCHL 105 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE-CCCC
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE-hhcC
Confidence 456 999999999999999998764 9999999965 4567888999888888999999884 3344
Q ss_pred --ccHHHHHHHHHHhccCCcEEEEEeccCCCcC-----cCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 175 --LYPDKFVMEIERTLKPGGVCVLHVALSKRAD-----KYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 175 --~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
.++.++++++.++|||||.+++.++...... ......+++.+++.+++. ||..+.
T Consensus 106 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 106 PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEE
Confidence 4678899999999999999999987543321 111125679999999999 664433
No 69
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.60 E-value=1.1e-15 Score=130.68 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=93.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhcc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHA 174 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~ 174 (257)
++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+..+|+.+.++ +++||+|+++ +++|+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 678999999999999999999865 9999999975 46788999998877 7889999984 99999
Q ss_pred cc--HHHHHHHHHHhccCCcEEEEEeccCCCcCcC--CCCCcCChhHHHHhcccCCcEEE
Q 025148 175 LY--PDKFVMEIERTLKPGGVCVLHVALSKRADKY--SANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 175 ~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y--~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
.+ ...+++++.++|||||.+++........... .....++..++.++|...++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEFLEY 257 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcCCEEEEE
Confidence 64 4589999999999999988876533221111 12245688899999987444433
No 70
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.59 E-value=1.4e-15 Score=126.99 Aligned_cols=163 Identities=12% Similarity=0.035 Sum_probs=109.6
Q ss_pred ChHHHHHHHhhhcCCccccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecC
Q 025148 62 SYDAYIQRQLNKTLNPKLRTTWTTRDWDRKIQVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDL 141 (257)
Q Consensus 62 ~y~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~ 141 (257)
.|.+...+............+|....|+.......... ..+.++.+|||+|||+|.++..+++.+. +|+|+|+
T Consensus 14 ~~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~ 86 (245)
T 3ggd_A 14 NVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFE------LLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDV 86 (245)
T ss_dssp CHHHHHHHHHHHHHHHTCCCTTCCCGGGTHHHHHHHHT------TTSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEES
T ss_pred chHHHHHHHHHhcccCCccceecchhHHHHHHHHHHHh------hccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEEC
Confidence 35544444433333333344566655554443322221 1246788999999999999999999766 9999999
Q ss_pred CCC------------CCcEEEecCCCCCCCC-----CchhHHHHH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 142 VPY------------PPLVIEGDFHRQPFDD-----ETFDFEFSN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 142 s~~------------~~~~~~~d~~~~~~~~-----~~fD~V~~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
|+. ++.++++|+.+.+... ..||+|+++ +++|+. ++.++++++.++|||||++++.....
T Consensus 87 s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 87 SKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp CHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred CHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 965 4678888888765432 238899884 999998 78899999999999999988876432
Q ss_pred CCc---------------------CcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 202 KRA---------------------DKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 202 ~~~---------------------~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
... ..-.....++.+++.++| .||..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aGf~~~~~~ 217 (245)
T 3ggd_A 167 GCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PDFEILSQG 217 (245)
T ss_dssp THHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TTEEEEEEE
T ss_pred cccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CCCEEEecc
Confidence 110 000011235788999999 788766544
No 71
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.59 E-value=2.3e-15 Score=129.58 Aligned_cols=124 Identities=17% Similarity=0.263 Sum_probs=96.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------CCcEEEecCCCCCCCCCchhHHHH--
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------PPLVIEGDFHRQPFDDETFDFEFS-- 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~fD~V~~-- 168 (257)
..+.+|||||||+|.++..+++.+ .+|+|+|+|+. ++.++++|+.++++ +++||+|++
T Consensus 81 ~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~ 158 (299)
T 3g2m_A 81 PVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISS 158 (299)
T ss_dssp CCCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECH
T ss_pred CCCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECC
Confidence 345599999999999999999986 49999999964 36789999999887 678998774
Q ss_pred HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCc--------CcC-------------------------------
Q 025148 169 NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRA--------DKY------------------------------- 207 (257)
Q Consensus 169 ~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--------~~y------------------------------- 207 (257)
.+++|+. +..++++++.++|||||.+++.+++.... +.+
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (299)
T 3g2m_A 159 GSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADET 238 (299)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESCC-
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEeccCC
Confidence 4777766 35789999999999999999998653210 000
Q ss_pred --------CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 208 --------SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 208 --------~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
...++|+.+++.++++++||..+....
T Consensus 239 ~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~ 273 (299)
T 3g2m_A 239 TDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTP 273 (299)
T ss_dssp -CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEE
T ss_pred CCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEe
Confidence 001357999999999999998766543
No 72
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.59 E-value=5.6e-16 Score=133.16 Aligned_cols=123 Identities=9% Similarity=0.007 Sum_probs=87.4
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHc-CCCcE--EEecCCCCC----------------CcE--EEecCCCCC------
Q 025148 109 SNESKALCIGARVGQEVEA----LKRV-GVSDS--VGIDLVPYP----------------PLV--IEGDFHRQP------ 157 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~----l~~~-~~~~v--~gvD~s~~~----------------~~~--~~~d~~~~~------ 157 (257)
.++.+|||||||+|.++.. ++.. +...| +|+|+|+.+ +.+ ..++..+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4567999999999976543 3332 34444 999999651 112 233333332
Q ss_pred CCCCchhHHHH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCc--------Cc-C---CCCCcCChhHHHHhccc
Q 025148 158 FDDETFDFEFS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRA--------DK-Y---SANDLFSVKPLVKLFKR 224 (257)
Q Consensus 158 ~~~~~fD~V~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--------~~-y---~~~~~~~~~~~~~~f~~ 224 (257)
+++++||+|++ ++++|+.|+.+++++++|+|||||++++..+..+.. +. . ....+++..++.+++.+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN 210 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHH
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHH
Confidence 56889999988 599999999999999999999999999986543210 00 0 11245688999999999
Q ss_pred CCcEEEE
Q 025148 225 SEMVRVR 231 (257)
Q Consensus 225 ~~~~~~~ 231 (257)
.||....
T Consensus 211 aGf~~~~ 217 (292)
T 2aot_A 211 LGLKYEC 217 (292)
T ss_dssp HTCCEEE
T ss_pred CCCceEE
Confidence 9987554
No 73
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.59 E-value=2e-15 Score=119.70 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=95.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------CCcEEEecCCCCCCCCCchhHHHHH-HhhccccH----
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALYP---- 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~~---- 177 (257)
.++.+|||+|||+|.++..+++.+ +|+|+|+|+. ++.+.++|+.+ ++++++||+|+++ .+++..+.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~ 98 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALESHRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIG 98 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHTCSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTB
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhcccCCeEEECChhh-hcccCCCCEEEECCCCccCCcccccc
Confidence 456799999999999999999877 9999999975 67889999987 6677899999997 55544433
Q ss_pred -----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec-CCCCceEEEEEc
Q 025148 178 -----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD-GFGLDTEVVFRK 246 (257)
Q Consensus 178 -----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~-gf~~~~~vv~~k 246 (257)
.++++++.+.| |||.+++..+... ...++.+++++.||....... .++.+..++.+.
T Consensus 99 ~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~-----------~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~ 161 (170)
T 3q87_B 99 GGYLGREVIDRFVDAV-TVGMLYLLVIEAN-----------RPKEVLARLEERGYGTRILKVRKILGETVYIIKG 161 (170)
T ss_dssp CCGGGCHHHHHHHHHC-CSSEEEEEEEGGG-----------CHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEE
T ss_pred CCcchHHHHHHHHhhC-CCCEEEEEEecCC-----------CHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEE
Confidence 57889999999 9999999875332 578899999999987655443 344445555554
No 74
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.58 E-value=9.8e-16 Score=129.03 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=97.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------C------------------------------
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------P------------------------------ 145 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~------------------------------ 145 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+|+. .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3567899999999999999888765458999999965 1
Q ss_pred --C-cEEEecCCCCC-CCC---CchhHHHH-HHhh----ccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC----C
Q 025148 146 --P-LVIEGDFHRQP-FDD---ETFDFEFS-NVFD----HALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYS----A 209 (257)
Q Consensus 146 --~-~~~~~d~~~~~-~~~---~~fD~V~~-~~l~----h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~----~ 209 (257)
+ .+..+|+.+.+ +++ ++||+|++ .+++ |+.++.++++++.++|||||++++..+......... .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 4 67888888764 355 89999988 5888 667889999999999999999999875432211000 1
Q ss_pred CCcCChhHHHHhcccCCcEEEEEe
Q 025148 210 NDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 210 ~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
...++.+++.+++.+.||..+...
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEE
Confidence 134578899999999999766554
No 75
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=122.99 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=80.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
+.++.+|||+|||+|.++..+++.+..+|+|+|+|+. .+.+..+|+.++++++++||+|+++ +++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 4678899999999999999999876559999999964 4788999999999888999999884 6655
Q ss_pred c---------------ccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 174 A---------------LYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 174 ~---------------~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+ .++.++++++.++|||||.+++.++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 4 36788999999999999999998863
No 76
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.57 E-value=1.3e-15 Score=131.89 Aligned_cols=91 Identities=14% Similarity=0.030 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------C---------CcEEEecC------CCC--CCCC
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------P---------PLVIEGDF------HRQ--PFDD 160 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~---------~~~~~~d~------~~~--~~~~ 160 (257)
++.+|||||||+|..+..++..+..+|+|+|+|+. . +.+.+.|+ .++ ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 47899999999998776666655569999999976 1 12456666 222 3567
Q ss_pred CchhHHHH-HHhhcc---ccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 161 ETFDFEFS-NVFDHA---LYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~---~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++||+|+| .+++|+ .+..+++++++|+|||||++++.+++
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999988 477765 35578999999999999999999874
No 77
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.56 E-value=7.4e-15 Score=121.43 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=100.1
Q ss_pred HhhcCCCCCeEEEECCC-CCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC-CCCCCchhHHH
Q 025148 104 RKKLLSNESKALCIGAR-VGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
....++++.+|||+||| +|.++..+++....+|+|+|+++. ++.++++|+... ++++++||+|+
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEE
Confidence 34556788999999999 999999999873459999999976 478889997543 55678999999
Q ss_pred HH-Hhhcc-------------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 168 SN-VFDHA-------------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 168 ~~-~l~h~-------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
++ .+.+. ....++++++.++|||||++++.++... ....++.+.+.+.|+
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~~~~~~~l~~~g~ 198 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE----------KLLNVIKERGIKLGY 198 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------HHHHHHHHHHHHTTC
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------hHHHHHHHHHHHcCC
Confidence 86 33222 2247889999999999999999876321 135678888899888
Q ss_pred EEEE--EecCCCCceEEEEEcccc
Q 025148 228 VRVR--KVDGFGLDTEVVFRKNAK 249 (257)
Q Consensus 228 ~~~~--~~~gf~~~~~vv~~k~~~ 249 (257)
.... ...|+.....+++.|...
T Consensus 199 ~~~~~~~~~g~~~~~~l~f~~~~~ 222 (230)
T 3evz_A 199 SVKDIKFKVGTRWRHSLIFFKGIS 222 (230)
T ss_dssp EEEEEEECCCC-CEEEEEEECCC-
T ss_pred ceEEEEecCCCeEEEEEEEecccc
Confidence 4333 234777667788877554
No 78
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.56 E-value=1.2e-15 Score=126.88 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=95.2
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-------------CCcEEEecCCC---CCCCCCchhHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-------------PPLVIEGDFHR---QPFDDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-------------~~~~~~~d~~~---~~~~~~~fD~V 166 (257)
...+++|++|||+|||+|.++..+++. +.++|+|+|+++. ++..+.+|... .++..+++|+|
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvV 151 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGL 151 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEE
Confidence 344699999999999999999999985 4579999999966 45566666654 35667889998
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe--cCCCCceEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV--DGFGLDTEVVF 244 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~--~gf~~~~~vv~ 244 (257)
+++ +.|..++..++.++++.|||||.+++..........-.... ...+..+.+.+.||...... ..|..+-.+++
T Consensus 152 f~d-~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~--~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~ 228 (233)
T 4df3_A 152 YAD-VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSE--VYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIY 228 (233)
T ss_dssp EEC-CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCH--HHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEE
T ss_pred EEe-ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHH--HHHHHHHHHHHCCCEEEEEEccCCCCCceEEEE
Confidence 875 34556788899999999999999998753211100000001 12334556777888765554 47765544444
Q ss_pred E
Q 025148 245 R 245 (257)
Q Consensus 245 ~ 245 (257)
.
T Consensus 229 ~ 229 (233)
T 4df3_A 229 A 229 (233)
T ss_dssp E
T ss_pred E
Confidence 3
No 79
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.54 E-value=6.3e-16 Score=129.08 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=75.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC--CCCCCchhHHHH---
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ--PFDDETFDFEFS--- 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~--~~~~~~fD~V~~--- 168 (257)
..+|++|||||||+|..+..+++....+++|||+|+. .+.++.++..+. ++++++||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 4678999999999999999998875568999999976 245666776543 577888998753
Q ss_pred ---HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 ---NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ---~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+++|..++..++++++|+|||||+|++..
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 378889999999999999999999998753
No 80
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.54 E-value=4.4e-15 Score=121.86 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=70.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCC----CCCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQ----PFDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~----~~~~~~fD~V~~~ 169 (257)
++++.+|||+|||+|..+..+++. +.++|+|+|+|+. ++.++.+|+... ++. ++||+|+++
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 467889999999999999999885 4469999999973 455667777663 444 789999998
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+.++ .+...++++++|+|||||.+++.++
T Consensus 134 ~~~~-~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 134 IAQK-NQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp CCST-THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCh-hHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5333 3344568999999999999999864
No 81
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.53 E-value=8.6e-15 Score=120.13 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=90.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCCCCCCCchhHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQPFDDETFDFE- 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~~~~~fD~V- 166 (257)
..++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.+.++|+.++++++++ |.|
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence 467889999999999999999986 3579999999975 357889999999988766 654
Q ss_pred --HH-HHh--hccccHHHHHHHHHHhccCCcEEEEEeccCCCcC---cCCCCCcC----ChhHHHHhcccCCcEEEE
Q 025148 167 --FS-NVF--DHALYPDKFVMEIERTLKPGGVCVLHVALSKRAD---KYSANDLF----SVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 167 --~~-~~l--~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~---~y~~~~~~----~~~~~~~~f~~~~~~~~~ 231 (257)
++ ... +|+.++.++++++.++|||||.+++......... .......+ ..+.+...+.+.||....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 33 233 4888999999999999999999999764322110 01111111 233477788889986544
No 82
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.53 E-value=5.2e-14 Score=122.83 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=98.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
.++.+|||+|||+|.++..+++. +..+++++|++ . ++.+..+|+.+.+++++ ||+|++ ++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 66789999999999999999886 55699999998 4 36788999988777665 999988 69
Q ss_pred hhccccH--HHHHHHHHHhccCCcEEEEEeccCCCcCc---------------CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 FDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRADK---------------YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~---------------y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++|+.++ .++++++.++|||||++++..+....... ......++.+++.+++++.||..+...
T Consensus 242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 9999544 68999999999999999887654321100 013355789999999999999877765
Q ss_pred c
Q 025148 234 D 234 (257)
Q Consensus 234 ~ 234 (257)
.
T Consensus 322 ~ 322 (335)
T 2r3s_A 322 S 322 (335)
T ss_dssp C
T ss_pred E
Confidence 4
No 83
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.53 E-value=1.2e-13 Score=122.53 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=95.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
+.++.+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+.+ +++++ |+|++ +++||+.+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD 276 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence 456789999999999999999885 6678999998 32 56788999887 77765 99888 69998886
Q ss_pred HH--HHHHHHHHhccCCcEEEEEeccCCCcC------------------cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 177 PD--KFVMEIERTLKPGGVCVLHVALSKRAD------------------KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 177 ~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~------------------~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.. +++++++++|||||++++......... .......++.+++.++++++||..+....
T Consensus 277 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~ 354 (368)
T 3reo_A 277 EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVAS 354 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEE
Confidence 54 789999999999999998754321100 01123456889999999999998877665
No 84
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.53 E-value=9.2e-15 Score=118.82 Aligned_cols=122 Identities=10% Similarity=0.099 Sum_probs=94.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-Hh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-VF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l 171 (257)
+.++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.+..+|+.+. .+++||+|+++ .+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcH
Confidence 4578899999999999999999887779999999965 277888888764 45789999986 55
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
++ ..++++++.++|||||.+++...... +...+.+++.+.|+..+.....-+ ...++.++
T Consensus 136 ~~---~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~~~~~Gf~~~~~~~~~~-w~~~~~~~ 195 (205)
T 3grz_A 136 EI---LLDLIPQLDSHLNEDGQVIFSGIDYL-----------QLPKIEQALAENSFQIDLKMRAGR-WIGLAISR 195 (205)
T ss_dssp HH---HHHHGGGSGGGEEEEEEEEEEEEEGG-----------GHHHHHHHHHHTTEEEEEEEEETT-EEEEEEEE
T ss_pred HH---HHHHHHHHHHhcCCCCEEEEEecCcc-----------cHHHHHHHHHHcCCceEEeeccCC-EEEEEEec
Confidence 54 36789999999999999999754322 467888999999998766554323 23344443
No 85
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.53 E-value=6.2e-14 Score=123.42 Aligned_cols=125 Identities=15% Similarity=0.116 Sum_probs=96.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
.+.++.+|||||||+|..+..+++. +..+++++|+++. ++.+..+|+. .+++ +||+|++ +++
T Consensus 181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vl 257 (348)
T 3lst_A 181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRIL 257 (348)
T ss_dssp CCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCG
T ss_pred CccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhc
Confidence 3567789999999999999999885 5668999997521 3678888986 3444 7999988 699
Q ss_pred hccccH--HHHHHHHHHhccCCcEEEEEeccCCCcC-------------cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 172 DHALYP--DKFVMEIERTLKPGGVCVLHVALSKRAD-------------KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 172 ~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------------~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
||+.++ .+++++++++|||||++++......... .......++.+++.+++++.||..+....
T Consensus 258 h~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 258 HNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp GGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 999988 5899999999999999999764322110 01122456899999999999998877765
No 86
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.53 E-value=9.2e-14 Score=122.25 Aligned_cols=138 Identities=10% Similarity=0.077 Sum_probs=102.9
Q ss_pred CCC-CCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHH-
Q 025148 108 LSN-ESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFS- 168 (257)
Q Consensus 108 ~~~-~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~- 168 (257)
..+ +.+|||||||+|.++..+++. +..+++++|+... ++.+..+|+.+.+ +.++.||+|++
T Consensus 176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 176 VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLN 255 (352)
T ss_dssp GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEe
Confidence 344 789999999999999999885 5679999999321 3678899988765 13456999988
Q ss_pred HHhhccccH--HHHHHHHHHhccCCcEEEEEeccCCCcC---------------cCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 169 NVFDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRAD---------------KYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 169 ~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~---------------~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++++|+.++ .+++++++++|||||++++..+...... .......++.+++.+++++.||..+.
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 256 DCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence 699999866 7899999999999999998764221100 01123467899999999999998887
Q ss_pred EecCCCCceEEEEEcc
Q 025148 232 KVDGFGLDTEVVFRKN 247 (257)
Q Consensus 232 ~~~gf~~~~~vv~~k~ 247 (257)
...|. ...++.+|.
T Consensus 336 ~~~g~--~~l~~a~kp 349 (352)
T 3mcz_A 336 RSIGR--YTLLIGQRS 349 (352)
T ss_dssp EEETT--EEEEEEECC
T ss_pred eccCc--eEEEEEecC
Confidence 55443 344555553
No 87
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.52 E-value=1.6e-15 Score=126.24 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC--CCCCCchhHHHH-H-
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ--PFDDETFDFEFS-N- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~--~~~~~~fD~V~~-~- 169 (257)
..++.+|||||||+|.++..+++.+..+|+|+|+|+. ++.++++|+.++ ++++++||+|++ .
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4578899999999999999998766569999999965 356788898888 889999999988 2
Q ss_pred H----hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 V----FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~----l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ..|..+.+.++++++|+|||||++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 2233345578999999999999999764
No 88
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.52 E-value=1.6e-14 Score=119.79 Aligned_cols=134 Identities=18% Similarity=0.224 Sum_probs=92.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCC----CCCCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHR----QPFDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~----~~~~~~~fD~V~~~ 169 (257)
+.++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.++.+|+.+ .++. ++||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~-- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIY-- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEE--
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEE--
Confidence 467889999999999999999986 5569999999964 45678889887 6666 7899987
Q ss_pred HhhccccH---HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec--CCCCc-eEEE
Q 025148 170 VFDHALYP---DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD--GFGLD-TEVV 243 (257)
Q Consensus 170 ~l~h~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~--gf~~~-~~vv 243 (257)
+++.++ ..+++++.++|||||.+++............. ..+..+++. ++.+.||..+.... .|..+ ..++
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~ 224 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP-KEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFV 224 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH-HHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCH-HHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEE
Confidence 455666 77899999999999999997421110000000 011235566 77888886655543 55333 3455
Q ss_pred EEccc
Q 025148 244 FRKNA 248 (257)
Q Consensus 244 ~~k~~ 248 (257)
.+|+.
T Consensus 225 ~~k~~ 229 (230)
T 1fbn_A 225 GIWEG 229 (230)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 55543
No 89
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.52 E-value=4.7e-15 Score=122.65 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=88.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecC-CCCCCC-CCchhHHHHHHhhccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDF-HRQPFD-DETFDFEFSNVFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~-~~~~~~-~~~fD~V~~~~l~h~~ 175 (257)
+.++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.++++|+ ..+|++ +++||+|+++ .
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-----~ 119 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-----R 119 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----S
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----C
Confidence 4678899999999999999999885 49999999965 578999999 567888 8999999886 4
Q ss_pred cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
++..+++++.++|||||.++... ...+...+...+.+.||.....
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~~~~------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 GPTSVILRLPELAAPDAHFLYVG------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp CCSGGGGGHHHHEEEEEEEEEEE------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEeC------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 67789999999999999999221 1125678888899988875543
No 90
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.52 E-value=3.7e-14 Score=115.24 Aligned_cols=108 Identities=16% Similarity=0.105 Sum_probs=86.7
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
..+.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+. ++.++.+|+.+.....++||+|+++
T Consensus 36 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~ 115 (204)
T 3e05_A 36 LRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIG 115 (204)
T ss_dssp TTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEES
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEEC
Confidence 345678899999999999999999874 579999999975 4667888886654444679999885
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
.++ ++.++++++.++|||||++++..+... +...+.+.+++.|+
T Consensus 116 ~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 116 GSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD-----------TLTKAVEFLEDHGY 160 (204)
T ss_dssp CCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH-----------HHHHHHHHHHHTTC
T ss_pred CCCc---CHHHHHHHHHHhcCCCeEEEEEecccc-----------cHHHHHHHHHHCCC
Confidence 443 778999999999999999999875332 45677788888887
No 91
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.52 E-value=2.5e-14 Score=119.73 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCc
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~ 162 (257)
.++..++......++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+.++|+.+++++ ++
T Consensus 28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~ 105 (252)
T 1wzn_A 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NE 105 (252)
T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SC
T ss_pred HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CC
Confidence 4444444444446678999999999999999998764 9999999965 467899999988765 67
Q ss_pred hhHHHHH--Hhhcc--ccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 163 FDFEFSN--VFDHA--LYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 163 fD~V~~~--~l~h~--~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
||+|++. .++|. .+..++++++.++|||||.+++.+++
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 9999863 44444 35678999999999999999998754
No 92
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.51 E-value=4.5e-14 Score=114.17 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=74.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-C--CCcEEEecCCCC----CCcEEEecCCCCC----------------------
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-G--VSDSVGIDLVPY----PPLVIEGDFHRQP---------------------- 157 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~gvD~s~~----~~~~~~~d~~~~~---------------------- 157 (257)
.++++.+|||+|||+|.++..+++. + ..+|+|+|+|+. ++.++++|+.+.+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 98 (201)
T 2plw_A 19 FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKL 98 (201)
T ss_dssp CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHH
Confidence 3577889999999999999999885 4 479999999986 4778899998876
Q ss_pred ---CCCCchhHHHHH-Hhhcc----ccH-------HHHHHHHHHhccCCcEEEEEec
Q 025148 158 ---FDDETFDFEFSN-VFDHA----LYP-------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 158 ---~~~~~fD~V~~~-~l~h~----~~~-------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++++||+|+++ .+++. .+. .++++++.++|||||.+++.+.
T Consensus 99 ~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 99 KEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 567899999986 43332 222 2378999999999999999764
No 93
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.51 E-value=9.3e-15 Score=126.68 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=76.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------------CCcEEEecCCCCC----CC--C
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------------PPLVIEGDFHRQP----FD--D 160 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------------~~~~~~~d~~~~~----~~--~ 160 (257)
.++.+|||+|||+|.++..+++.+..+++|+|+|+. ++.++++|+.+.+ ++ +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 467899999999999999998876679999999965 2467899998876 54 4
Q ss_pred CchhHHHH-HHhhcc----ccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 161 ETFDFEFS-NVFDHA----LYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 161 ~~fD~V~~-~~l~h~----~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++||+|+| .+++|+ .++..+++++.++|||||.+++.++.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 58999988 488777 45678999999999999999999874
No 94
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.51 E-value=2.2e-13 Score=119.03 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=95.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
... .+|||+|||+|..+..+++. +..+++++|+ +. ++.+..+|+.+ +++ ++||+|++ +
T Consensus 166 ~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~ 241 (334)
T 2ip2_A 166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSR 241 (334)
T ss_dssp CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEES
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEch
Confidence 344 89999999999999999885 5669999999 65 36778888877 555 57999988 6
Q ss_pred HhhccccHH--HHHHHHHHhccCCcEEEEEeccCCCcCc-------------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 170 VFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKRADK-------------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 170 ~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~-------------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+++|+.++. +++++++++|||||++++.......... ......++..++.+++++.||..+....
T Consensus 242 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 242 IIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 999888766 8999999999999999998643211000 0012345889999999999998776554
No 95
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.51 E-value=4.6e-14 Score=110.94 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=78.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----CCcEEEecCCCCC--------CCCCchhHHHHH-Hh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----PPLVIEGDFHRQP--------FDDETFDFEFSN-VF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~-~l 171 (257)
.+.++.+|||+|||+|.++..+++. + ..+++|+|+++. ++.+..+|+.+.+ +++++||+|+++ .+
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~ 98 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAP 98 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCc
Confidence 3577889999999999999999886 3 469999999982 4567888888876 777899999985 56
Q ss_pred hccccH-----------HHHHHHHHHhccCCcEEEEEeccC
Q 025148 172 DHALYP-----------DKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 172 ~h~~~~-----------~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
++..++ .++++++.++|||||.+++.++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 99 NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 555544 688999999999999999987643
No 96
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.51 E-value=1.4e-14 Score=116.46 Aligned_cols=93 Identities=12% Similarity=0.048 Sum_probs=77.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHHH-H
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFSN-V 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~-~ 170 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.++++|+.+.+ +++++||+|+++ .
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 467899999999999999888877778999999965 3578888887763 457889999997 6
Q ss_pred hhcc-ccHHHHHHHHHH--hccCCcEEEEEeccC
Q 025148 171 FDHA-LYPDKFVMEIER--TLKPGGVCVLHVALS 201 (257)
Q Consensus 171 l~h~-~~~~~~l~~~~r--~LkpgG~l~i~~~~~ 201 (257)
+++. .+..++++++.+ +|||||.+++..+..
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 6664 678899999999 999999999988643
No 97
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.50 E-value=4.9e-14 Score=124.84 Aligned_cols=136 Identities=15% Similarity=0.200 Sum_probs=102.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC--CCCCCchhHHHH-
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ--PFDDETFDFEFS- 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~--~~~~~~fD~V~~- 168 (257)
....+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+.+. |++ ++||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 45679999999999999999885 5679999998 43 367889999875 466 67999988
Q ss_pred HHhhccccH--HHHHHHHHHhccCCcEEEEEeccCCCc------------------CcCCCCCcCChhHHHHhcccCCcE
Q 025148 169 NVFDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRA------------------DKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 169 ~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~------------------~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
++++|+.++ .+++++++++|||||++++..+..... ........++.+++.+++++.||.
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 699988765 478999999999999999876432210 011122466899999999999998
Q ss_pred EEEEec--CCCCceEEEEEcc
Q 025148 229 RVRKVD--GFGLDTEVVFRKN 247 (257)
Q Consensus 229 ~~~~~~--gf~~~~~vv~~k~ 247 (257)
.+.... |.. .+.+..++.
T Consensus 336 ~v~~~~~~g~~-~svi~~~~~ 355 (363)
T 3dp7_A 336 VEEIQDNIGLG-HSILQCRLK 355 (363)
T ss_dssp ESCCCCCBTTT-BEEEEEEEC
T ss_pred EEEEEeCCCCC-ceEEEEeec
Confidence 877664 444 244444443
No 98
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.50 E-value=1.6e-13 Score=121.83 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=98.4
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS- 168 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~- 168 (257)
...++.+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+. .+++. .||+|++
T Consensus 199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~ 275 (369)
T 3gwz_A 199 DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIK 275 (369)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEE
T ss_pred CCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhh
Confidence 3466789999999999999999885 5679999998 44 4678899988 46665 7999988
Q ss_pred HHhhccccHH--HHHHHHHHhccCCcEEEEEeccCCCcC------------cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 169 NVFDHALYPD--KFVMEIERTLKPGGVCVLHVALSKRAD------------KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 169 ~~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~------------~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
++++|+.++. +++++++++|||||++++..+...... .......++.+++.+++++.||..+....
T Consensus 276 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 276 HVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred hhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 6999998876 799999999999999999764322100 01112446899999999999998877765
No 99
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.50 E-value=2e-13 Score=120.59 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=99.1
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchh
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFD 164 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD 164 (257)
++......++.+|||||||+|.++..+++. +..+++++|+ +. .+.+..+|+.+.++++. |
T Consensus 182 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D 258 (359)
T 1x19_A 182 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--D 258 (359)
T ss_dssp HHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--S
T ss_pred HHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--C
Confidence 333333567789999999999999999885 5669999999 55 26788999988877654 9
Q ss_pred HHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEeccCCCc--C--------------cCCCCCcCChhHHHHhcccC
Q 025148 165 FEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHVALSKRA--D--------------KYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 165 ~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~--------------~y~~~~~~~~~~~~~~f~~~ 225 (257)
+|++ ++++|+.+ ..+++++++++|||||++++........ . ......+++.+++.+++++.
T Consensus 259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~a 338 (359)
T 1x19_A 259 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL 338 (359)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHH
T ss_pred EEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHC
Confidence 9888 69999987 7889999999999999998875322110 0 00111337899999999999
Q ss_pred CcEEEEEec
Q 025148 226 EMVRVRKVD 234 (257)
Q Consensus 226 ~~~~~~~~~ 234 (257)
||..+....
T Consensus 339 Gf~~v~~~~ 347 (359)
T 1x19_A 339 GYKDVTMVR 347 (359)
T ss_dssp TCEEEEEEE
T ss_pred CCceEEEEe
Confidence 998766554
No 100
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.50 E-value=1.2e-14 Score=116.12 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=72.5
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~ 169 (257)
..+.++.+|||+|||+|.++..+++. ..+|+|+|+|+. ++.+++.+..+++ +.+++||+|+++
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 18 EVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred HhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 34578899999999999999999988 469999999975 3566776666642 457889999775
Q ss_pred --Hhh--------ccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 --VFD--------HALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 --~l~--------h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+. +..+..++++++.++|||||.+++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 333 223556788999999999999999874
No 101
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.50 E-value=6.9e-14 Score=124.20 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=95.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
+.++.+|||||||+|.++..+++. +..+++++|+ +. ++.++.+|+.+ ++++ ||+|++ +++||+.+
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d 282 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSD 282 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCH
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCH
Confidence 456789999999999999999986 4668899997 33 46788899887 6665 999988 69999998
Q ss_pred HH--HHHHHHHHhccCCcEEEEEeccCCC-cC-c---------------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 177 PD--KFVMEIERTLKPGGVCVLHVALSKR-AD-K---------------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 177 ~~--~~l~~~~r~LkpgG~l~i~~~~~~~-~~-~---------------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+. +++++++++|||||++++....... .+ . ......++..++.+++++.||..+....
T Consensus 283 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 283 EKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 88 8999999999999999987432110 00 0 0112446888999999999997766554
No 102
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.50 E-value=1.6e-14 Score=115.48 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=77.0
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------C--CcEEEecCCCCCCCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------P--PLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~--~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
...++.+|||+|||+|.++..+++. ..+++|+|+++. + +.+..+|+.+ +.++++||+|+++
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~ 126 (194)
T 1dus_A 49 VVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITN 126 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEEC
T ss_pred ccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEEC
Confidence 3457889999999999999999887 569999999965 2 6778888877 4457789999986
Q ss_pred -Hhhc-cccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 170 -VFDH-ALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 170 -~l~h-~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
.++| ..+..++++++.++|||||.+++.++..
T Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 127 PPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred CCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 6665 4567789999999999999999998643
No 103
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.49 E-value=1e-13 Score=122.22 Aligned_cols=123 Identities=10% Similarity=0.122 Sum_probs=95.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------CCcEEEecCCCCCCCCCchhHHHH-HHhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------PPLVIEGDFHRQPFDDETFDFEFS-NVFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~ 176 (257)
+.++.+|||||||+|.++..+++. +..+++++|+ +. .+.+..+|+.+ ++++ ||+|++ ++++|+.+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTD 261 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCH
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCH
Confidence 356789999999999999999985 5679999998 43 36778888876 5553 999988 69999998
Q ss_pred HH--HHHHHHHHhccC---CcEEEEEeccCCCcCc----------C------CCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 177 PD--KFVMEIERTLKP---GGVCVLHVALSKRADK----------Y------SANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 177 ~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~----------y------~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+. +++++++++||| ||++++..+....... + .....++..++.+++++.||..+....
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 87 899999999999 9999987643211000 0 112345788999999999997766554
No 104
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.49 E-value=8.9e-14 Score=121.51 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=96.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-HH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-NV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~~ 170 (257)
.+..+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+. .+++. +||+|++ ++
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 44679999999999999999875 5678999998 44 4678889987 45555 7999988 69
Q ss_pred hhccccH--HHHHHHHHHhccCCcEEEEEeccCCCcCc----------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 171 FDHALYP--DKFVMEIERTLKPGGVCVLHVALSKRADK----------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 171 l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~----------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
++|+.++ .+++++++++|||||++++..+....... ......++.+++.+++++.||..+....
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9999986 78999999999999999998653321100 1112456899999999999998777664
No 105
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.49 E-value=7.9e-14 Score=123.60 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=100.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
+.++.+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+.+ +++.+ ||+|++ +
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~ 256 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-ADVVLLSF 256 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EEEEEEES
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CCEEEEec
Confidence 467789999999999999999886 4569999998 43 46788889875 44444 999988 6
Q ss_pred HhhccccHH--HHHHHHHHhccCCcEEEEEec--cCCCc--C-----------cCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 170 VFDHALYPD--KFVMEIERTLKPGGVCVLHVA--LSKRA--D-----------KYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 170 ~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~--~~~~~--~-----------~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+++|+.++. +++++++++|||||++++..+ ..... . .......++.+++.+++++.||..+..
T Consensus 257 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 336 (374)
T 1qzz_A 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 336 (374)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 999998775 899999999999999998765 21100 0 001124568999999999999987665
Q ss_pred ec--CCCCc---eEEEEEcccc
Q 025148 233 VD--GFGLD---TEVVFRKNAK 249 (257)
Q Consensus 233 ~~--gf~~~---~~vv~~k~~~ 249 (257)
.. +.... ..+..+|.+.
T Consensus 337 ~~~~~~~~~~~~~~i~~~~~~~ 358 (374)
T 1qzz_A 337 RTSGSTTLPFDFSILEFTAVSE 358 (374)
T ss_dssp EEECCSSCSSCEEEEEEEECC-
T ss_pred EECCCCcccCCcEEEEEEECcc
Confidence 54 22111 4556565543
No 106
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.49 E-value=1.4e-13 Score=117.86 Aligned_cols=91 Identities=16% Similarity=0.072 Sum_probs=74.8
Q ss_pred hhcCCCCCeEEEECCCCCHHH-HHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEV-EALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~-~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...++++++|||||||+|.++ ..+++...++|+|+|+|+. ++.++++|+.+++ +++||+|++
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV 194 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence 345688999999999998765 4456655679999999976 4678899998865 789999987
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
... ..++.++++++.|+|||||++++...
T Consensus 195 ~a~--~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 195 AAL--AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CTT--CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCC--ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 533 57889999999999999999999764
No 107
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.48 E-value=3.3e-14 Score=116.49 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~~ 170 (257)
.++.+|||||||+|.++..+++. +..+++|+|+|+. ++.++++|+.+++ +++++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 35789999999999999999885 4679999999965 4678899998876 7788999998862
Q ss_pred h-hccc--------cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 171 F-DHAL--------YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 171 l-~h~~--------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
- .+.. ....+++++.++|||||.+++.+.... ....+.+.+.+.|+......
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG-----------LFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH-----------HHHHHHHHHHHHTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH-----------HHHHHHHHHHHCCCeeeecc
Confidence 2 1111 125799999999999999999874221 13456667777787655543
No 108
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.47 E-value=6e-14 Score=116.66 Aligned_cols=136 Identities=14% Similarity=0.178 Sum_probs=89.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-------------CCcEEEecCCCCC---CCCCchhHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-------------PPLVIEGDFHRQP---FDDETFDFEFS 168 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~V~~ 168 (257)
.+++|.+|||+|||+|.++..+++. +.++|+|+|+++. ++.++.+|+.... ...++||+|++
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence 3678999999999999999999885 3679999999973 5677888887642 12468999999
Q ss_pred HHhhccccHHHHH-HHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec--CCCCc-eEEEE
Q 025148 169 NVFDHALYPDKFV-MEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD--GFGLD-TEVVF 244 (257)
Q Consensus 169 ~~l~h~~~~~~~l-~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~--gf~~~-~~vv~ 244 (257)
++-. .+..+.+ ..+.+.|||||.+++.+............. ..+.....+++.+|..+.... .|.-+ ..++.
T Consensus 153 d~a~--~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e--~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~ 228 (232)
T 3id6_C 153 DIAQ--PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKE--IYKTEVEKLENSNFETIQIINLDPYDKDHAIVLS 228 (232)
T ss_dssp CCCC--TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSS--STTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEE
T ss_pred cCCC--hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHH--HHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEE
Confidence 7432 3444444 566679999999999863211111111111 224556677778887766665 45433 34444
Q ss_pred Ec
Q 025148 245 RK 246 (257)
Q Consensus 245 ~k 246 (257)
++
T Consensus 229 ~~ 230 (232)
T 3id6_C 229 KY 230 (232)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 109
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.47 E-value=1.8e-14 Score=127.76 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=77.7
Q ss_pred CCCCCeEEEECCC------CCHHHHHHHHc--CCCcEEEecCCCC------CCcEEEecCCCCCCC------CCchhHHH
Q 025148 108 LSNESKALCIGAR------VGQEVEALKRV--GVSDSVGIDLVPY------PPLVIEGDFHRQPFD------DETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG------~G~~~~~l~~~--~~~~v~gvD~s~~------~~~~~~~d~~~~~~~------~~~fD~V~ 167 (257)
..++.+||||||| +|..+..+.+. +.++|+|+|+|+. ++.++++|+.++++. +++||+|+
T Consensus 214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVi 293 (419)
T 3sso_A 214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVI 293 (419)
T ss_dssp TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEE
Confidence 3567899999999 66556555543 5679999999987 578899999998877 78999999
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|+..++..+..+++++++|+|||||++++....
T Consensus 294 sdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 294 DDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp ECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 986677788899999999999999999998643
No 110
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.47 E-value=1.8e-14 Score=128.13 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=82.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC------------------------CCCcEEEe
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP------------------------YPPLVIEG 151 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~------------------------~~~~~~~~ 151 (257)
..+..++....+.++++|||||||+|.++..++.. +..+|+|||+++ .++.++++
T Consensus 160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 44445555556788999999999999999999875 544699999995 24678999
Q ss_pred cCCCCCCCC--CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 152 DFHRQPFDD--ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 152 d~~~~~~~~--~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+.++++.+ ..||+|++|.+.|.++..+.+.+++|+|||||++++.-+
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred cccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeec
Confidence 999988754 468999987444667888999999999999999998754
No 111
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.47 E-value=8.7e-14 Score=117.33 Aligned_cols=123 Identities=18% Similarity=0.294 Sum_probs=91.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
+.++.+|||+|||+|.++..+++.+. +|+|+|+++. .+.+..+|+.+. +++++||+|+++.+.|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHH
Confidence 56788999999999999999998876 9999999976 156677776652 4567899999873322
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
....+++++.++|||||+++++..... +...+.+.+.+.||........-+ ...++++|
T Consensus 196 --~~~~~l~~~~~~LkpgG~lils~~~~~-----------~~~~v~~~l~~~Gf~~~~~~~~~~-W~~l~~~k 254 (254)
T 2nxc_A 196 --LHAALAPRYREALVPGGRALLTGILKD-----------RAPLVREAMAGAGFRPLEEAAEGE-WVLLAYGR 254 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------GHHHHHHHHHHTTCEEEEEEEETT-EEEEEEEC
T ss_pred --HHHHHHHHHHHHcCCCCEEEEEeeccC-----------CHHHHHHHHHHCCCEEEEEeccCC-eEEEEEEC
Confidence 245789999999999999999764322 477888999999987665544222 23355543
No 112
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.47 E-value=6.8e-13 Score=117.54 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=95.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC--------CCCcEEEecCCCCCCCCCchhHHHH-HHhhccccH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP--------YPPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYP 177 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~ 177 (257)
+.+..+|||||||+|.++..+++. +..+++++|+.. .++.+..+|+.+ +++++ |+|++ +++||+.+.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~ 275 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQ 275 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHH
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHH
Confidence 456789999999999999999875 667899999831 157889999987 77765 99888 699988654
Q ss_pred --HHHHHHHHHhccCCcEEEEEeccCCCc--C----------------cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 178 --DKFVMEIERTLKPGGVCVLHVALSKRA--D----------------KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 178 --~~~l~~~~r~LkpgG~l~i~~~~~~~~--~----------------~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.+++++++++|||||++++........ . .......++.+++.++++++||..+....
T Consensus 276 ~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~ 352 (364)
T 3p9c_A 276 HCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTY 352 (364)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 578999999999999999875432110 0 01122456789999999999998777665
No 113
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.46 E-value=5.1e-14 Score=111.42 Aligned_cols=106 Identities=15% Similarity=0.025 Sum_probs=79.4
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCC-CCCCCCchhHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHR-QPFDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~~~~~fD~V~ 167 (257)
....++.+|||+|||+|.++..+++. +..+|+|+|+++. ++ ++.+|..+ ++..+++||+|+
T Consensus 21 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~ 99 (178)
T 3hm2_A 21 LAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIF 99 (178)
T ss_dssp HCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEE
T ss_pred hcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEE
Confidence 34567889999999999999999886 4679999999975 23 66677643 233237899998
Q ss_pred HH-HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 168 SN-VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 168 ~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
++ +++| .++++++.++|||||.+++...... +......++.+.++
T Consensus 100 ~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~~~~~~~ 145 (178)
T 3hm2_A 100 IGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE-----------SEQMLWALRKQFGG 145 (178)
T ss_dssp ECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH-----------HHHHHHHHHHHHCC
T ss_pred ECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc-----------cHHHHHHHHHHcCC
Confidence 85 7776 6799999999999999999875332 34455666666654
No 114
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.46 E-value=2.4e-14 Score=118.82 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=89.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-------------CCcEEEecCCC---CCCCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-------------PPLVIEGDFHR---QPFDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-------------~~~~~~~d~~~---~~~~~~~fD~V~~~ 169 (257)
+.++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.+..+|+.+ +++.+++||+|+++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 567889999999999999999986 3469999999953 56788888887 34567889999986
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe--cCCCCce
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV--DGFGLDT 240 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~--~gf~~~~ 240 (257)
.. .......++.++.++|||||++++.+.............++. .+ .+++.+.||..+... ..|..+.
T Consensus 155 ~~-~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~-~~-~~~l~~~Gf~~~~~~~~~~~~~~~ 224 (233)
T 2ipx_A 155 VA-QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFA-SE-VKKMQQENMKPQEQLTLEPYERDH 224 (233)
T ss_dssp CC-CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHH-HH-HHTTGGGTEEEEEEEECTTTSSSE
T ss_pred CC-CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHH-HH-HHHHHHCCCceEEEEecCCccCCc
Confidence 33 222234568899999999999999764311000000001111 22 578899999766643 3565443
No 115
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.46 E-value=4.9e-14 Score=119.21 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=74.7
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCCCCCC-----CCCchhHHH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFHRQPF-----DDETFDFEF 167 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~~~~~-----~~~~fD~V~ 167 (257)
++....+.++.+|||||||+|.++..+++.+. +|+|+|+|+.+ ...+..++.+.+. .+++||+|+
T Consensus 37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv 115 (261)
T 3iv6_A 37 DIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVL 115 (261)
T ss_dssp HHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEE
T ss_pred HHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEE
Confidence 33344457889999999999999999999864 99999999761 1134555555443 256899999
Q ss_pred HH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ +++|+. +...+++++.++| |||.++++++
T Consensus 116 ~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 116 NDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred EhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 95 888875 5567899999999 9999999975
No 116
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.46 E-value=5.6e-14 Score=125.23 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=91.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+. .+.++.+|+.+.+.++++||+|+++ .++|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 3678999999999999999999864 9999999965 4678999999887777899999997 6766
Q ss_pred -----cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 174 -----ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 174 -----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
..+..++++++.++|||||.+++.+.... . ....+.+.|.... .+ ...||.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l---~-------~~~~l~~~f~~v~--~l-~~~gF~ 366 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL---K-------YEPLLEEKFGAFQ--TL-KVAEYK 366 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS---C-------HHHHHHHHHSCCE--EE-EESSSE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC---C-------hHHHHHHhhccEE--EE-eCCCEE
Confidence 45678899999999999999999875322 1 1344556666543 34 557887
No 117
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.46 E-value=1.5e-13 Score=111.07 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=73.3
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----CCcEEEecCCCCCCC-----------CCchhHHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----PPLVIEGDFHRQPFD-----------DETFDFEFSNV 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----~~~~~~~d~~~~~~~-----------~~~fD~V~~~~ 170 (257)
..++++.+|||+|||+|.++..+++. .++|+|+|+++. ++.++++|+.+.+.. .++||+|+|+.
T Consensus 21 ~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~ 99 (191)
T 3dou_A 21 RVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDA 99 (191)
T ss_dssp CCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECC
T ss_pred CCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCC
Confidence 34578899999999999999999987 569999999986 678899999886521 14899998851
Q ss_pred ---------hhcc---ccHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 ---------FDHA---LYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 ---------l~h~---~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+|. ...+.+++++.++|||||.+++.+.
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 100 MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2221 1235678999999999999998774
No 118
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.46 E-value=1.4e-13 Score=112.25 Aligned_cols=107 Identities=14% Similarity=-0.018 Sum_probs=82.5
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
..+.++.+|||+|||+|.++..+++. ..+|+|+|+++. ++.++.+|+.+......+||+|+++
T Consensus 51 l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~ 129 (204)
T 3njr_A 51 LAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIG 129 (204)
T ss_dssp HCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEEC
T ss_pred cCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEEC
Confidence 34567889999999999999999988 569999999965 3567888888743334579999875
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
. ..++. +++++.++|||||++++.....+ +...+.+++++.++.
T Consensus 130 ~---~~~~~-~l~~~~~~LkpgG~lv~~~~~~~-----------~~~~~~~~l~~~g~~ 173 (204)
T 3njr_A 130 G---GGSQA-LYDRLWEWLAPGTRIVANAVTLE-----------SETLLTQLHARHGGQ 173 (204)
T ss_dssp S---CCCHH-HHHHHHHHSCTTCEEEEEECSHH-----------HHHHHHHHHHHHCSE
T ss_pred C---cccHH-HHHHHHHhcCCCcEEEEEecCcc-----------cHHHHHHHHHhCCCc
Confidence 2 11566 99999999999999999886433 355666777777653
No 119
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.45 E-value=1e-13 Score=121.81 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=76.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCC---------------CCCcEEEecCCCCCCCCCchhHHHHH---
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP---------------YPPLVIEGDFHRQPFDDETFDFEFSN--- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~---------------~~~~~~~~d~~~~~~~~~~fD~V~~~--- 169 (257)
+.++.+|||||||+|.++..+++.+..+|+|+|+|+ .++.++.+|+.++++++++||+|+++
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 141 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence 467889999999999999999998766999999995 24678899999999888899999885
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEE
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~ 195 (257)
.+.|..+...++.++.++|||||.++
T Consensus 142 ~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 35666678889999999999999988
No 120
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.45 E-value=1.5e-14 Score=117.59 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=84.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCCCC--------------cEEEecCCCCCCCC-----CchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPYPP--------------LVIEGDFHRQPFDD-----ETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~--------------~~~~~d~~~~~~~~-----~~fD~V~~ 168 (257)
.++.+|||+|||+|.++..+++.. ..+++|+|+|+..+ .+.++|+.+ ++++ ++||+|++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence 577899999999999999999863 55999999998733 233344443 4444 88999988
Q ss_pred H-------Hhhcccc--------------------HHHHHHHHHHhccCCcE-EEEEeccCCCcCcCCCCCcCChhHHHH
Q 025148 169 N-------VFDHALY--------------------PDKFVMEIERTLKPGGV-CVLHVALSKRADKYSANDLFSVKPLVK 220 (257)
Q Consensus 169 ~-------~l~h~~~--------------------~~~~l~~~~r~LkpgG~-l~i~~~~~~~~~~y~~~~~~~~~~~~~ 220 (257)
+ .++|+.. ..++++++.++|||||+ +++.++.. ....+.+
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------~~~~~~~ 175 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN------------QADEVAR 175 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS------------CHHHHHH
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc------------cHHHHHH
Confidence 4 2222221 16788999999999999 66655421 4678888
Q ss_pred hcc--cCCcEEEEEec-CCCCceEEEEEccc
Q 025148 221 LFK--RSEMVRVRKVD-GFGLDTEVVFRKNA 248 (257)
Q Consensus 221 ~f~--~~~~~~~~~~~-gf~~~~~vv~~k~~ 248 (257)
++. +.++..+.... ..+..+.++.+++.
T Consensus 176 ~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 176 LFAPWRERGFRVRKVKDLRGIDRVIAVTREP 206 (215)
T ss_dssp HTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred HHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence 898 88887665554 23333555555543
No 121
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.44 E-value=4.7e-13 Score=118.08 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=94.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH-H
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS-N 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~-~ 169 (257)
+.++.+|||||||+|.++..+++. +..+++++|+ +. ++.+..+|+.+ +++.+ ||+|++ +
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~ 257 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRK-ADAIILSF 257 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSC-EEEEEEES
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCC-ccEEEEcc
Confidence 466789999999999999999885 4568999998 54 36788888875 44444 999888 6
Q ss_pred HhhccccH--HHHHHHHHHhccCCcEEEEEecc-CCCcC--c-----------CCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 VFDHALYP--DKFVMEIERTLKPGGVCVLHVAL-SKRAD--K-----------YSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 ~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~-~~~~~--~-----------y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+++|+.++ .+++++++++|||||++++..+. ..... . ......++.+++.+++++.||..+...
T Consensus 258 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 337 (360)
T 1tw3_A 258 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 337 (360)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999877 47999999999999999987654 21100 0 011245689999999999999776654
Q ss_pred c
Q 025148 234 D 234 (257)
Q Consensus 234 ~ 234 (257)
.
T Consensus 338 ~ 338 (360)
T 1tw3_A 338 Q 338 (360)
T ss_dssp E
T ss_pred e
Confidence 3
No 122
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.44 E-value=6.1e-14 Score=123.63 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=77.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH----
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN---- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~---- 169 (257)
.++.+|||||||+|.++..+++.+..+|+|+|+|+. .+.++.+|+.++++++++||+|+++
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 467899999999999999999987779999999952 2688999999999998999999985
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+.+..+...+++++.|+|||||+++..
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 2445568889999999999999998744
No 123
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.44 E-value=1.2e-13 Score=131.33 Aligned_cols=92 Identities=15% Similarity=0.233 Sum_probs=80.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCC--CcEEEecCCCC---------------------CCcEEEecCCCCCCCCCchhH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGV--SDSVGIDLVPY---------------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~---------------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+. ++.+.++|+.++++++++||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 3688999999999999999998752 59999999964 257889999999999999999
Q ss_pred HHH-HHhhccccHH--HHHHHHHHhccCCcEEEEEeccC
Q 025148 166 EFS-NVFDHALYPD--KFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 166 V~~-~~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
|++ .+++|+.++. .+++++.++|||| .+++.+|+.
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 998 5999999876 5899999999999 899988765
No 124
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=111.25 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=72.8
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-CC---------CcEEEecCCCC----CCcEE-EecCCCCC--------CCCCc
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-GV---------SDSVGIDLVPY----PPLVI-EGDFHRQP--------FDDET 162 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~---------~~v~gvD~s~~----~~~~~-~~d~~~~~--------~~~~~ 162 (257)
..+.++.+|||+|||+|.++..+++. +. .+|+|+|+++. .+.+. .+|+.+.+ +++++
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (196)
T 2nyu_A 18 QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRR 97 (196)
T ss_dssp CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCC
Confidence 34678899999999999999999986 43 68999999986 35677 77776543 34568
Q ss_pred hhHHHHH-H----hhccccH-------HHHHHHHHHhccCCcEEEEEec
Q 025148 163 FDFEFSN-V----FDHALYP-------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 163 fD~V~~~-~----l~h~~~~-------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
||+|+|+ . .+|..+. ..+++++.++|||||.+++.+.
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 9999874 2 2233333 4789999999999999999875
No 125
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.44 E-value=8.2e-14 Score=118.25 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=72.9
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEE--EecCCCCCCCCCc
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVI--EGDFHRQPFDDET 162 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~--~~d~~~~~~~~~~ 162 (257)
++.....++++.+|||+|||+|.++..+++. .+|+|+|+++. ++.++ ++|+.+++ +++
T Consensus 65 ~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~ 140 (265)
T 2oxt_A 65 WMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VER 140 (265)
T ss_dssp HHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCC
T ss_pred HHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCC
Confidence 3334456678899999999999999999987 59999999874 23456 77887765 678
Q ss_pred hhHHHHHHhhccccH----H---HHHHHHHHhccCCc--EEEEEec
Q 025148 163 FDFEFSNVFDHALYP----D---KFVMEIERTLKPGG--VCVLHVA 199 (257)
Q Consensus 163 fD~V~~~~l~h~~~~----~---~~l~~~~r~LkpgG--~l~i~~~ 199 (257)
||+|+|+..++..++ . ++++++.++||||| .+++.+.
T Consensus 141 fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 141 TDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 999999633333222 1 37899999999999 9998764
No 126
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.44 E-value=9.4e-14 Score=117.25 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=86.4
Q ss_pred CC-CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC--CCCCchhHHHH
Q 025148 108 LS-NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP--FDDETFDFEFS 168 (257)
Q Consensus 108 ~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~ 168 (257)
.. ++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.++++|+.+.+ +++++||+|++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~ 125 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTC 125 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEE
Confidence 35 68899999999999999999976569999999965 3678889988875 55789999998
Q ss_pred H-Hhh-----cc---------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 169 N-VFD-----HA---------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 169 ~-~l~-----h~---------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
| .+. +. .+..++++++.++|||||++++..+.. ...++...+.+.++
T Consensus 126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~l~~~~~ 193 (259)
T 3lpm_A 126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE------------RLLDIIDIMRKYRL 193 (259)
T ss_dssp CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT------------THHHHHHHHHHTTE
T ss_pred CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH------------HHHHHHHHHHHCCC
Confidence 6 211 11 234578999999999999999976432 36677788888777
Q ss_pred EEEE
Q 025148 228 VRVR 231 (257)
Q Consensus 228 ~~~~ 231 (257)
....
T Consensus 194 ~~~~ 197 (259)
T 3lpm_A 194 EPKR 197 (259)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 5443
No 127
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.43 E-value=7.1e-14 Score=116.64 Aligned_cols=130 Identities=12% Similarity=-0.030 Sum_probs=92.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCC---CCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFD---DETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~---~~~fD~V~~~ 169 (257)
.++.+|||||||+|..+..++.. +..+|+|+|+|+. ++.++++|+.+++++ +++||+|+|.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 46789999999999999999863 5569999999974 467888888887654 6789999985
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe--c-CC--CCceEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV--D-GF--GLDTEVVF 244 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~--~-gf--~~~~~vv~ 244 (257)
. +.++..+++++.++|||||.+++..... .. ....++.+.+++.|+...... . .. +....+++
T Consensus 149 ~---~~~~~~~l~~~~~~LkpgG~l~~~~g~~-----~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~ 216 (240)
T 1xdz_A 149 A---VARLSVLSELCLPLVKKNGLFVALKAAS-----AE----EELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVI 216 (240)
T ss_dssp C---CSCHHHHHHHHGGGEEEEEEEEEEECC------CH----HHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEE
T ss_pred c---cCCHHHHHHHHHHhcCCCCEEEEEeCCC-----ch----HHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEE
Confidence 4 3568899999999999999999864211 00 023456677788887654432 1 11 11244566
Q ss_pred Eccccc
Q 025148 245 RKNAKS 250 (257)
Q Consensus 245 ~k~~~~ 250 (257)
+|...+
T Consensus 217 ~k~~~~ 222 (240)
T 1xdz_A 217 RKIKNT 222 (240)
T ss_dssp EECSCC
T ss_pred EecCCC
Confidence 665443
No 128
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.43 E-value=5.3e-14 Score=115.51 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~~ 170 (257)
.++.+|||||||+|.++..+++. +..+++|+|+|+. ++.++++|+.+++ +++++||.|+++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 35789999999999999999985 5679999999965 4678888988765 6788899886542
Q ss_pred -hhccc--------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 -FDHAL--------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 -l~h~~--------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..+.. ....+++++.++|||||.+++.+.
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 11111 135789999999999999999874
No 129
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.43 E-value=6e-14 Score=113.20 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=74.9
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCC-CCCCchhHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQP-FDDETFDFEF 167 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~-~~~~~fD~V~ 167 (257)
.++++.+|||+|||+|.++..+++. +.++|+|+|+++. ++.++++|+.+++ +.+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 4577899999999999999999886 4569999999965 3578888988775 5668899998
Q ss_pred HH-Hh-h--------ccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN-VF-D--------HALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~-~l-~--------h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ .+ . +..+..++++++.++|||||++++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 86 22 1 122456799999999999999999874
No 130
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.42 E-value=2.6e-13 Score=113.79 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=92.2
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCch
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~f 163 (257)
++....+.++.+|||+|||+|.++..+++. + ..+|+++|+++. ++.+..+|+.+.++++++|
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~ 167 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAY 167 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCE
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCc
Confidence 333444678899999999999999999986 3 569999999853 3567888988887888899
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
|+|++ +..++.++++++.++|||||.+++.++... ...++.+.+++.+|..+...
T Consensus 168 D~v~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~l~~~gf~~~~~~ 222 (258)
T 2pwy_A 168 DGVAL----DLMEPWKVLEKAALALKPDRFLVAYLPNIT-----------QVLELVRAAEAHPFRLERVL 222 (258)
T ss_dssp EEEEE----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH-----------HHHHHHHHHTTTTEEEEEEE
T ss_pred CEEEE----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCceEEEE
Confidence 99987 456778999999999999999999887432 24456667777887655443
No 131
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.42 E-value=1.3e-13 Score=117.49 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=89.5
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
..+.++.+|||+|||+|.++..+++. +..+|+|+|+++. ++.+..+|+.+ ++++++||+|+
T Consensus 106 ~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi 184 (275)
T 1yb2_A 106 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVI 184 (275)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEE
T ss_pred cCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEE
Confidence 34577889999999999999999886 3569999999853 35677888877 66778899998
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+ |.+++.++++++.++|||||++++.++... ....+.+.+.+.||..+...
T Consensus 185 ~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-----------~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 185 A----DIPDPWNHVQKIASMMKPGSVATFYLPNFD-----------QSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp E----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH-----------HHHHHHHHSGGGTEEEEEEE
T ss_pred E----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCeEEEEE
Confidence 7 567888999999999999999999987432 24567777888887655544
No 132
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.42 E-value=1.3e-13 Score=122.73 Aligned_cols=92 Identities=21% Similarity=0.164 Sum_probs=76.4
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
....++.+|||||||+|.++..+++.+..+|+|+|+|+. .+.++++|+.+++++ ++||+|+++.
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~ 137 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW 137 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC
Confidence 345678899999999999999999987679999999932 268899999998877 7899999964
Q ss_pred hhcc----ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHA----LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~----~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.|. ..+..+++++.++|||||++++..
T Consensus 138 ~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3332 457889999999999999998753
No 133
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.42 E-value=4.1e-13 Score=108.97 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=82.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h 173 (257)
++.+|||+|||+|.++..+++. +..+++|+|+|+. ++.+..+|+.+.+ ++++||+|+++.+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 4789999999999999999885 5679999999965 3677888888766 4578999988643
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
.+...+++++.++|||||.+++.... ...+++..++. +|..+.
T Consensus 142 -~~~~~~l~~~~~~L~~gG~l~~~~~~------------~~~~~~~~~~~--g~~~~~ 184 (207)
T 1jsx_A 142 -ASLNDMVSWCHHLPGEQGRFYALKGQ------------MPEDEIALLPE--EYQVES 184 (207)
T ss_dssp -SSHHHHHHHHTTSEEEEEEEEEEESS------------CCHHHHHTSCT--TEEEEE
T ss_pred -CCHHHHHHHHHHhcCCCcEEEEEeCC------------CchHHHHHHhc--CCceee
Confidence 45678999999999999999997631 14567777766 665444
No 134
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.42 E-value=2.4e-13 Score=115.84 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=91.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH---
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN--- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~--- 169 (257)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+. ++.+.++|+.+. +++++||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPY 186 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCC
Confidence 56789999999999999999864 5679999999965 366778887763 446789999885
Q ss_pred -----------Hhhcc------------ccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC
Q 025148 170 -----------VFDHA------------LYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE 226 (257)
Q Consensus 170 -----------~l~h~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~ 226 (257)
+++|. .+..++++++.++|||||++++..+. .+..++.+++.+.|
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~------------~~~~~~~~~l~~~G 254 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW------------QQGEAVRQAFILAG 254 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS------------SCHHHHHHHHHHTT
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------------hHHHHHHHHHHHCC
Confidence 22232 24577889999999999999998642 24778889999888
Q ss_pred cEEEEEe-cCCCCceEEEEE
Q 025148 227 MVRVRKV-DGFGLDTEVVFR 245 (257)
Q Consensus 227 ~~~~~~~-~gf~~~~~vv~~ 245 (257)
|..+... +-.+.++.++.+
T Consensus 255 f~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 255 YHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp CTTCCEEECTTSSEEEEEEE
T ss_pred CcEEEEEecCCCCCcEEEEE
Confidence 8544433 233434444443
No 135
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.42 E-value=1.2e-13 Score=117.98 Aligned_cols=97 Identities=8% Similarity=0.007 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEE--EecCCCCCCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVI--EGDFHRQPFDD 160 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~--~~d~~~~~~~~ 160 (257)
+.++.....++++.+|||+|||+|.++..+++. .+|+|+|+++. ++.++ ++|+.+++ +
T Consensus 71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~ 146 (276)
T 2wa2_A 71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--P 146 (276)
T ss_dssp HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--C
T ss_pred HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--C
Confidence 344444556678899999999999999999987 59999999874 23456 77887765 6
Q ss_pred CchhHHHHHHhhccccH----H---HHHHHHHHhccCCc--EEEEEec
Q 025148 161 ETFDFEFSNVFDHALYP----D---KFVMEIERTLKPGG--VCVLHVA 199 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~----~---~~l~~~~r~LkpgG--~l~i~~~ 199 (257)
++||+|+|+..++..++ . ++++++.++||||| .+++.+.
T Consensus 147 ~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 147 FQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 78999999633332222 1 37899999999999 9998764
No 136
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.42 E-value=2.7e-13 Score=116.14 Aligned_cols=122 Identities=13% Similarity=0.109 Sum_probs=84.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcE--------E---EecCCCCC---CCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLV--------I---EGDFHRQP---FDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~--------~---~~d~~~~~---~~~~~fD~V~~~-~l~h 173 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+.+... . ..++..++ ++..+||+|+++ ++++
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence 4577999999999999999999877799999999884422 1 22333333 344569998886 5554
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe-ccCCCcC-cCCCC--------CcCChhHHHHhcccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV-ALSKRAD-KYSAN--------DLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~-~~~~~~~-~y~~~--------~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+ ..++.+++|+|||||.+++.+ |..+... ..... +.+..+++..++.+.||......
T Consensus 164 l---~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 164 L---NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp G---GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred H---HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4 679999999999999998864 3222111 11111 22356778888999999755543
No 137
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.41 E-value=1.4e-13 Score=117.20 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCCH----HHHHHHHc-C----CCcEEEecCCCC------------------------------------
Q 025148 110 NESKALCIGARVGQ----EVEALKRV-G----VSDSVGIDLVPY------------------------------------ 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~----~~~~l~~~-~----~~~v~gvD~s~~------------------------------------ 144 (257)
++.+|||+|||+|. ++..+++. + ..+|+|+|+|+.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 55556654 3 348999999854
Q ss_pred ----------CCcEEEecCCCCCCC-CCchhHHHH-HHhhccccH--HHHHHHHHHhccCCcEEEEEe
Q 025148 145 ----------PPLVIEGDFHRQPFD-DETFDFEFS-NVFDHALYP--DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 145 ----------~~~~~~~d~~~~~~~-~~~fD~V~~-~~l~h~~~~--~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.++|+.+.+++ +++||+|+| |++.|+.++ .+++++++++|||||+|++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 134567778776665 578999999 799999766 689999999999999999853
No 138
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.40 E-value=1.4e-13 Score=112.18 Aligned_cols=87 Identities=20% Similarity=0.175 Sum_probs=74.4
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
.+.++.+|||+|||+|.++..+++.+ .+|+|+|+++. ++.+..+|..+...++++||+|+++ +
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA 152 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccc
Confidence 45778999999999999999999884 59999999965 3678889988876677899999885 8
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++|+.+ ++.+.|||||++++.++.
T Consensus 153 ~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred hhhhhH------HHHHhcccCcEEEEEEcC
Confidence 888875 588999999999999864
No 139
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.40 E-value=2.2e-13 Score=115.24 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHHHhhccccH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSNVFDHALYP 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~ 177 (257)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+. .+.+..+|+.++++++++||+|++...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~------ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA------ 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC------
Confidence 57889999999999999999986 4569999999975 467899999999999999999987421
Q ss_pred HHHHHHHHHhccCCcEEEEEeccCCC
Q 025148 178 DKFVMEIERTLKPGGVCVLHVALSKR 203 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~~~~ 203 (257)
...++++.++|||||.+++.++....
T Consensus 158 ~~~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 158 PCKAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp CCCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred hhhHHHHHHhcCCCcEEEEEEcCHHH
Confidence 13589999999999999999886543
No 140
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.40 E-value=5.3e-13 Score=113.81 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=87.8
Q ss_pred CCCeEEEECCCC---CHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCCC-----------CCCC
Q 025148 110 NESKALCIGARV---GQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQP-----------FDDE 161 (257)
Q Consensus 110 ~~~~vLDiGcG~---G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~~-----------~~~~ 161 (257)
...+|||||||+ |.++..+.+. +..+|+++|+|+. ++.++.+|+.+.+ ++.+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 347999999999 9888777664 5579999999965 4678899987531 3335
Q ss_pred chhHHHH-HHhhcccc--HHHHHHHHHHhccCCcEEEEEeccCCC-------cCcCC----CCCcCChhHHHHhcccCCc
Q 025148 162 TFDFEFS-NVFDHALY--PDKFVMEIERTLKPGGVCVLHVALSKR-------ADKYS----ANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 162 ~fD~V~~-~~l~h~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~-------~~~y~----~~~~~~~~~~~~~f~~~~~ 227 (257)
+||+|++ .+++|+.+ +.+++++++++|||||+|++.....+. ...|. ...+++.+++.++|. ||
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l~--G~ 234 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQFG--DF 234 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTTT--TC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHhC--CC
Confidence 7999888 59999987 889999999999999999998764421 00011 224568899999984 55
Q ss_pred E
Q 025148 228 V 228 (257)
Q Consensus 228 ~ 228 (257)
.
T Consensus 235 ~ 235 (274)
T 2qe6_A 235 E 235 (274)
T ss_dssp E
T ss_pred e
Confidence 4
No 141
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.39 E-value=1.7e-13 Score=109.31 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=81.6
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCC-CchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDD-ETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~-~~fD~V~~~ 169 (257)
.+.++.+|||+|||+|.++..+++.+ .+|+|+|+++. .+.+..+|+.+ ++++ ++||+|+++
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~ 107 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVG 107 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEES
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEEC
Confidence 45678899999999999999999877 69999999864 34567777665 3333 589999885
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
+++ +..++++++.++|+|||.+++..+... +..++.+.+.+.|+
T Consensus 108 ~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~-----------~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 108 GSGG---ELQEILRIIKDKLKPGGRIIVTAILLE-----------TKFEAMECLRDLGF 152 (192)
T ss_dssp CCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH-----------HHHHHHHHHHHTTC
T ss_pred CchH---HHHHHHHHHHHhcCCCcEEEEEecCcc-----------hHHHHHHHHHHCCC
Confidence 544 357899999999999999999876432 34566677777776
No 142
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.39 E-value=2e-13 Score=114.63 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=88.7
Q ss_pred HhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhH
Q 025148 104 RKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
....+.++.+|||+|||+|.++..+++. + ..+|+|+|+++. .+.+..+|+.+. +++++||+
T Consensus 87 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~ 165 (255)
T 3mb5_A 87 AYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDH 165 (255)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEE
T ss_pred HhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCE
Confidence 3444678899999999999999999986 3 579999999965 267788888754 67788999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC--cEEEEEe
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE--MVRVRKV 233 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~--~~~~~~~ 233 (257)
|++ +..++.++++++.++|||||.+++..+... ...++.+.+++.+ |..+...
T Consensus 166 v~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 166 VIL----DLPQPERVVEHAAKALKPGGFFVAYTPCSN-----------QVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp EEE----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH-----------HHHHHHHHHHHTGGGBSCCEEE
T ss_pred EEE----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH-----------HHHHHHHHHHHcCCCccccEEE
Confidence 987 456778899999999999999999886432 3455666677776 6544443
No 143
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.39 E-value=1.1e-12 Score=115.90 Aligned_cols=123 Identities=9% Similarity=0.050 Sum_probs=94.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC--------CCCcEEEecCCCCCCCCCchhHHHH-HHhhccccHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP--------YPPLVIEGDFHRQPFDDETFDFEFS-NVFDHALYPD 178 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~-~~l~h~~~~~ 178 (257)
..+.+|||||||+|.++..+++. +..+++++|++. .++.+..+|+.+ +++ +||+|++ +++||+.++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~ 268 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQ 268 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHH
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHH
Confidence 45689999999999999999886 566899999841 146788888877 665 3999988 6999999877
Q ss_pred --HHHHHHHHhccC---CcEEEEEeccCCCcCc-----------------CCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 179 --KFVMEIERTLKP---GGVCVLHVALSKRADK-----------------YSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 179 --~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~-----------------y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+++++++++||| ||++++.......... ......++..++.+++++.||..+....
T Consensus 269 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 999999999999 9999987542211000 0112445889999999999997766554
No 144
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.38 E-value=5.8e-13 Score=110.33 Aligned_cols=125 Identities=12% Similarity=0.043 Sum_probs=77.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCCCCC-CCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQPFD-DETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~~-~~~fD~V 166 (257)
..++.+|||||||+|.++..+++. +..+|+|+|+|+. ++.+.++|+.++|.. .+.+|.|
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEE
Confidence 357789999999999999999864 5568999999942 245777888777421 1233333
Q ss_pred HHH-----Hhhcc-ccHHHHHHHHHHhccCCcEEEEEeccCCCcCc----CCCCCcCC-----hhHHHHhcccCCcEEEE
Q 025148 167 FSN-----VFDHA-LYPDKFVMEIERTLKPGGVCVLHVALSKRADK----YSANDLFS-----VKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 167 ~~~-----~l~h~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~----y~~~~~~~-----~~~~~~~f~~~~~~~~~ 231 (257)
.++ ..+|. .++..++++++|+|||||.+++.+...+.... ......++ ..++...+.+.||....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~ 181 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD 181 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence 322 11222 24567899999999999999995432221110 00001111 22378888888886544
Q ss_pred E
Q 025148 232 K 232 (257)
Q Consensus 232 ~ 232 (257)
.
T Consensus 182 ~ 182 (225)
T 3p2e_A 182 V 182 (225)
T ss_dssp E
T ss_pred e
Confidence 3
No 145
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.38 E-value=3.7e-13 Score=117.62 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=74.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH----
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN---- 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~---- 169 (257)
.++.+|||||||+|.++..+++.+..+|+|+|+++. .+.++.+|+.++++++++||+|+++
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 457899999999999999999987679999999932 3678899999998888899999885
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
.+.+...+..++.++.++|||||.++.
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 344455678899999999999999974
No 146
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.38 E-value=4.4e-13 Score=106.15 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=83.8
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
...++.+|||+|||+|.++..+++ +..+++|+|+++. ++.+..+|+.+ ++++++||+|+++..
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT 109 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc
Confidence 346778999999999999999998 6669999999964 35678888877 677788999988532
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
.++.++++++.++ |||.+++..+... ...++.+.+++.|+.
T Consensus 110 ---~~~~~~l~~~~~~--~gG~l~~~~~~~~-----------~~~~~~~~l~~~g~~ 150 (183)
T 2yxd_A 110 ---KNIEKIIEILDKK--KINHIVANTIVLE-----------NAAKIINEFESRGYN 150 (183)
T ss_dssp ---SCHHHHHHHHHHT--TCCEEEEEESCHH-----------HHHHHHHHHHHTTCE
T ss_pred ---ccHHHHHHHHhhC--CCCEEEEEecccc-----------cHHHHHHHHHHcCCe
Confidence 6778899999998 9999999886433 355677888888853
No 147
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.37 E-value=3.4e-13 Score=126.19 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=92.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCC--CCCCCchhHHHH-HH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQ--PFDDETFDFEFS-NV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~-~~ 170 (257)
..+.+|||||||.|.++..|++.|. +|+|||+++. ++.+.+++++++ .+++++||+|+| .+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 4567999999999999999999875 9999999965 356778888877 567789999999 69
Q ss_pred hhccccHHHH--HHHHHHhccCCcEEEEEecc-CCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCc
Q 025148 171 FDHALYPDKF--VMEIERTLKPGGVCVLHVAL-SKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLD 239 (257)
Q Consensus 171 l~h~~~~~~~--l~~~~r~LkpgG~l~i~~~~-~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~ 239 (257)
+||+.++..+ +..+.+.|+++|..++.... .+..-.+.. ....+..++.+..++.++....|..+.
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~~~~~~p---~~~~~~~~~i~~~~~~~~~~~~g~~~~ 212 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEEPFYWGV---SQPDDPRELIEQCAFYRLIGEFDTHLS 212 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTSSSGGGG---GSCSSGGGGTTTSSEEEEEEEECCSSS
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEeccccccccccC---CCCccHHHhcCHHHHHHHHHHcCCccc
Confidence 9999988643 45677888888876654422 111000000 023445677788888888877775553
No 148
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.37 E-value=3e-13 Score=119.11 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=76.0
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-H
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN-V 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 170 (257)
...++.+|||||||+|.++..+++.+..+|+|+|+|+. ++.++.+|+.+++++ ++||+|+++ .
T Consensus 47 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 125 (348)
T 2y1w_A 47 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 125 (348)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCC
T ss_pred ccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCc
Confidence 34578899999999999999999987779999999952 467889999988766 579999996 6
Q ss_pred hhccc--cHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHAL--YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~--~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++|+. +..+.+.++.++|||||.+++..
T Consensus 126 ~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 126 GYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp BTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 67765 34578889999999999998764
No 149
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.37 E-value=8.9e-14 Score=114.71 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCC-C--CCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQ-P--FDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~-~--~~~~~fD~V~~~ 169 (257)
..+.+|||||||+|.++..+++. +..+|+|+|+|+. ++.++++|+.++ + +++++||.|+++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 35789999999999999999985 5668999999965 467888888774 3 778999998765
Q ss_pred Hhh---ccccH------HHHHHHHHHhccCCcEEEEEec
Q 025148 170 VFD---HALYP------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~---h~~~~------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.-. ..... ..+++++.++|||||.+++.+.
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 211 11111 2599999999999999999884
No 150
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.36 E-value=1.3e-13 Score=109.41 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=82.8
Q ss_pred CCCCCeEEEECCCCCHH--HHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCC---CCCchhHHHH-HHhhcc-ccHHHH
Q 025148 108 LSNESKALCIGARVGQE--VEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPF---DDETFDFEFS-NVFDHA-LYPDKF 180 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~--~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~---~~~~fD~V~~-~~l~h~-~~~~~~ 180 (257)
+++|.+|||+|||...+ +..+.+....+ ....+.+.++|+.++++ ++++||+|+| .+++|+ .++.++
T Consensus 10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~------~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~ 83 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSPVEALKGLVDKLQAL------TGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEI 83 (176)
T ss_dssp CCTTSEEEEEECTTSCHHHHHHHHHHHHHH------TTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHH
T ss_pred CCCCCEEEEecCCceeeeCCHHHHHHHHHh------cccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHH
Confidence 57889999999997431 11111100000 01137788999998887 7899999999 599999 899999
Q ss_pred HHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE
Q 025148 181 VMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK 232 (257)
Q Consensus 181 l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~ 232 (257)
+++++|+|||||++++..|...... ...+.++..++.+.+.+.||..+..
T Consensus 84 l~~~~r~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~aGfi~~~~ 133 (176)
T 2ld4_A 84 LAEIARILRPGGCLFLKEPVETAVD--NNSKVKTASKLCSALTLSGLVEVKE 133 (176)
T ss_dssp HHHHHHHEEEEEEEEEEEEEESSSC--SSSSSCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCCEEEEEEcccccccc--cccccCCHHHHHHHHHHCCCcEeec
Confidence 9999999999999999766432111 1122346889999999999954443
No 151
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.36 E-value=8.8e-14 Score=110.30 Aligned_cols=94 Identities=14% Similarity=0.006 Sum_probs=72.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCC-CCCCCCchhHHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHR-QPFDDETFDFEFSNV 170 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~~~~~fD~V~~~~ 170 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.++.+|+.+ ++..+++||+|+++.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 3567899999999999999999886679999999965 25677777766 344456799998862
Q ss_pred hhccccHHHHHHHHH--HhccCCcEEEEEeccC
Q 025148 171 FDHALYPDKFVMEIE--RTLKPGGVCVLHVALS 201 (257)
Q Consensus 171 l~h~~~~~~~l~~~~--r~LkpgG~l~i~~~~~ 201 (257)
..|.....+.++.+. ++|||||++++.++..
T Consensus 109 ~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAKETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 222344567777777 9999999999988643
No 152
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.36 E-value=1.5e-12 Score=107.41 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=82.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC-------------CCcEEEecCCCCC---CCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY-------------PPLVIEGDFHRQP---FDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~V~~~ 169 (257)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+++. ++.++.+|+.+.. ..+++||+|+++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 467889999999999999999975 3 469999999973 5678888887732 123589999886
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
.. +......+++++.++|||||.+++............. ..+...++..+ .+. |..+....
T Consensus 151 ~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~l~~l-~~~-f~~~~~~~ 211 (227)
T 1g8a_A 151 VA-QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP-EQVFREVEREL-SEY-FEVIERLN 211 (227)
T ss_dssp CC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH-HHHHHHHHHHH-HTT-SEEEEEEE
T ss_pred CC-CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCCh-hhhhHHHHHHH-Hhh-ceeeeEec
Confidence 33 2222334599999999999999998532211111100 12234566666 555 76655543
No 153
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.35 E-value=9e-13 Score=109.71 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=78.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCCCcE--------EE---ecCC-----CC---CCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYPPLV--------IE---GDFH-----RQ---PFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~--------~~---~d~~-----~~---~~~~~~fD~V~~~ 169 (257)
..+.+|||||||+|.++..+++.+..+|+|+|+|+.++.. .. .++. ++ .++..+||+++++
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 4567999999999999999999875699999999884322 11 0111 11 1233466766554
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEec-cCCCcCc-CC------C--CCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVA-LSKRADK-YS------A--NDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~-~~~~~~~-y~------~--~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
. ..++++++|+|||||.+++.+. .....+. .. . ...++.+++..++.+.||......
T Consensus 116 l-------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 116 L-------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp G-------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred H-------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 2 5799999999999999998641 1111110 00 0 022367788899999999755543
No 154
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.35 E-value=6e-13 Score=111.89 Aligned_cols=130 Identities=17% Similarity=0.056 Sum_probs=91.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCC---CCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFD---DETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~---~~~fD~V~~~ 169 (257)
.++.+|||||||+|..+..++.. +..+|+|+|+|+. ++.++++|+++++.. +++||+|+|+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 46789999999999999999875 6679999999965 467889998877643 4789999986
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec----CCCCc-eEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD----GFGLD-TEVVF 244 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~----gf~~~-~~vv~ 244 (257)
.+ .+...+++++.++|||||++++...... . -...++.+.+...|+....... +..-. ..+++
T Consensus 159 a~---~~~~~ll~~~~~~LkpgG~l~~~~g~~~-----~----~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~ 226 (249)
T 3g89_A 159 AV---APLCVLSELLLPFLEVGGAAVAMKGPRV-----E----EELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVL 226 (249)
T ss_dssp SS---CCHHHHHHHHGGGEEEEEEEEEEECSCC-----H----HHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEE
T ss_pred Cc---CCHHHHHHHHHHHcCCCeEEEEEeCCCc-----H----HHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEE
Confidence 43 3567899999999999999988653110 0 0233455566666765444332 22222 45566
Q ss_pred Eccccc
Q 025148 245 RKNAKS 250 (257)
Q Consensus 245 ~k~~~~ 250 (257)
+|...+
T Consensus 227 ~k~~~t 232 (249)
T 3g89_A 227 EKTAPT 232 (249)
T ss_dssp EECSCC
T ss_pred EeCCCC
Confidence 664443
No 155
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.34 E-value=9e-13 Score=112.23 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=89.6
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchh
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFD 164 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD 164 (257)
+....+.++.+|||+|||+|.++..+++. + ..+|+++|+++. ++.+..+|+.+. +++++||
T Consensus 105 ~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D 183 (277)
T 1o54_A 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVD 183 (277)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEE
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccC
Confidence 33444677889999999999999999886 3 579999999864 356777887766 6677899
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
+|+++ .+++.++++++.++|||||.+++.++... ....+.+.+.+.+|..+....
T Consensus 184 ~V~~~----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-----------~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 184 ALFLD----VPDPWNYIDKCWEALKGGGRFATVCPTTN-----------QVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp EEEEC----CSCGGGTHHHHHHHEEEEEEEEEEESSHH-----------HHHHHHHHHHHSSEEEEEEEC
T ss_pred EEEEC----CcCHHHHHHHHHHHcCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCceeEEEE
Confidence 99874 56778899999999999999999986432 244566667778877665543
No 156
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.34 E-value=6.8e-13 Score=109.59 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=72.8
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHHHHH-Hh
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFEFSN-VF 171 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l 171 (257)
..+.++.+|||+|||+|.++..+++.+ .+|+|+|+++. ++.+..+|+.+....+++||+|+++ ++
T Consensus 66 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~ 144 (231)
T 1vbf_A 66 LDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATA 144 (231)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcH
Confidence 345678899999999999999999876 69999999965 3567888887733346789999884 88
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
+|+. .++.++|||||++++.++..
T Consensus 145 ~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 145 PTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp SSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred HHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 8876 36899999999999998643
No 157
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.34 E-value=1.3e-12 Score=109.05 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-----CCCcEEEecCCCC----------CCcEEEecCCCC---CCCC-CchhHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-----GVSDSVGIDLVPY----------PPLVIEGDFHRQ---PFDD-ETFDFEFSNV 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~----------~~~~~~~d~~~~---~~~~-~~fD~V~~~~ 170 (257)
++.+|||||||+|..+..+++. +.++|+|+|+++. ++.++++|..+. +..+ .+||+|+++.
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4679999999999999999885 3569999999987 367888998874 5433 4799998754
Q ss_pred hhccccHHHHHHHHHH-hccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccC
Q 025148 171 FDHALYPDKFVMEIER-TLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r-~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~ 225 (257)
. |. +..+++.++.| +|||||++++..... .+. -+..+.+.+++++.
T Consensus 161 ~-~~-~~~~~l~~~~r~~LkpGG~lv~~d~~~--~~~-----~~~~~~~~~~l~~~ 207 (236)
T 2bm8_A 161 A-HA-NTFNIMKWAVDHLLEEGDYFIIEDMIP--YWY-----RYAPQLFSEYLGAF 207 (236)
T ss_dssp S-CS-SHHHHHHHHHHHTCCTTCEEEECSCHH--HHH-----HHCHHHHHHHHHTT
T ss_pred c-hH-hHHHHHHHHHHhhCCCCCEEEEEeCcc--ccc-----ccCHHHHHHHHHhC
Confidence 3 43 67789999997 999999999964200 000 01344667777766
No 158
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.33 E-value=3.9e-13 Score=109.27 Aligned_cols=90 Identities=16% Similarity=0.042 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCCC--CCCc-hhHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPF--DDET-FDFEFSN 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~--~~~~-fD~V~~~ 169 (257)
++.+|||+|||+|.++..++..+..+|+|+|+|+. ++.++++|+.+... ++++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 56899999999999999877776669999999954 34677778766432 3678 9999986
Q ss_pred HhhccccHHHHHHHH--HHhccCCcEEEEEec
Q 025148 170 VFDHALYPDKFVMEI--ERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~--~r~LkpgG~l~i~~~ 199 (257)
.-.|..+..++++++ .++|||||.+++.+.
T Consensus 133 ~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 133 PPFHFNLAEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCCCccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 333456677888888 668999999999875
No 159
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.33 E-value=3.1e-12 Score=106.60 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=83.7
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
...+.++.+|||+|||+|.++..+++. ..+|+++|+++. ++.+..+|+.+...++++||+|++
T Consensus 86 ~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 164 (248)
T 2yvl_A 86 KLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV 164 (248)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEE
T ss_pred hcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEE
Confidence 334567889999999999999999987 569999999964 346677787775436678999887
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
+..++.++++++.++|||||.+++.++... ...++.+.+.+. |..+.
T Consensus 165 ----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~~l~~~-f~~~~ 211 (248)
T 2yvl_A 165 ----DVREPWHYLEKVHKSLMEGAPVGFLLPTAN-----------QVIKLLESIENY-FGNLE 211 (248)
T ss_dssp ----CSSCGGGGHHHHHHHBCTTCEEEEEESSHH-----------HHHHHHHHSTTT-EEEEE
T ss_pred ----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH-----------HHHHHHHHHHhh-CCcce
Confidence 345777899999999999999999987432 234555566655 55443
No 160
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.33 E-value=8e-13 Score=110.20 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=70.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------------CCcEEEecCCC-CC--CCCCch
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------------PPLVIEGDFHR-QP--FDDETF 163 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------------~~~~~~~d~~~-~~--~~~~~f 163 (257)
.++.+|||||||+|.++..+++. +..+|+|+|+|+. ++.++++|+.+ ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 45679999999999999999986 5679999999842 46788999887 56 778899
Q ss_pred hHHHHHHhh-ccc--------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 164 DFEFSNVFD-HAL--------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 164 D~V~~~~l~-h~~--------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|.|+++.-. +.. ....+++++.++|||||.+++.+..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 998653111 110 0136899999999999999998753
No 161
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.33 E-value=2.9e-13 Score=107.84 Aligned_cols=94 Identities=15% Similarity=-0.006 Sum_probs=73.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCC----CCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQP----FDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~----~~~~~fD~V~~ 168 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.++.+|+.+.. .++++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 467899999999999999888877679999999965 2567888876632 23678999998
Q ss_pred HHhhccccHHHHHHHH--HHhccCCcEEEEEeccCC
Q 025148 169 NVFDHALYPDKFVMEI--ERTLKPGGVCVLHVALSK 202 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~--~r~LkpgG~l~i~~~~~~ 202 (257)
+...+..+..+.++.+ .++|||||++++.++...
T Consensus 123 ~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 123 DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 6323345667777777 889999999999886443
No 162
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.33 E-value=1.5e-12 Score=110.78 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=78.7
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC------------------CCcEEEecCCCCCCCCCc
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY------------------PPLVIEGDFHRQPFDDET 162 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~ 162 (257)
+....+.++.+|||+|||+|.++..+++. +..+|+++|+++. ++.+..+|+.+.++++++
T Consensus 92 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~ 171 (280)
T 1i9g_A 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS 171 (280)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTC
T ss_pred HHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCc
Confidence 33444678899999999999999999985 3569999999853 356778888888887889
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
||+|++ +..++.++++++.++|||||.+++.++..
T Consensus 172 ~D~v~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 172 VDRAVL----DMLAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp EEEEEE----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred eeEEEE----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 999987 45578899999999999999999998753
No 163
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.32 E-value=2e-12 Score=114.92 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
..+.+|||+|||+|.++..+++. +..+|+|+|+|+. .+.+..+|+.+ ++++++||+|+++
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n 299 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN 299 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence 45689999999999999999987 3679999999966 14458888877 5677899999997
Q ss_pred -Hhhccc-----cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 170 -VFDHAL-----YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 170 -~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
.+++.. ...++++++.++|||||.+++...... .| ...+.+.|.. ...+....||.
T Consensus 300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~---~~-------~~~l~~~fg~--~~~~a~~~~F~ 361 (375)
T 4dcm_A 300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL---DY-------FHKLKKIFGN--CTTIATNNKFV 361 (375)
T ss_dssp CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS---CH-------HHHHHHHHSC--CEEEEECSSEE
T ss_pred CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc---CH-------HHHHHHhcCC--EEEEeeCCCEE
Confidence 555421 234689999999999999999774322 11 3455666663 44455555765
No 164
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=115.19 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH----H
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN----V 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~----~ 170 (257)
+|++|||||||+|.++..+++.|..+|+|||.|+. .+.++.++++++.++ ++||+|+|+ .
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence 57899999999999999999888889999999854 478899999999887 579999985 3
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.+-.....++....|.|||||.++-.
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccchhhhHHHHHHhhCCCCceECCc
Confidence 444445677888889999999988743
No 165
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.32 E-value=1.4e-12 Score=111.33 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=86.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
.+++.+|||+|||+|.++..+++.+..+|+|+|+|+. .+.++++|+.+.+. +++||+|+++
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~-- 199 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMG-- 199 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEEC--
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEEC--
Confidence 4678999999999999999999976547999999965 25688999988876 7789999885
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
+.....++++++.++|||||++++......... .. ...+.+.+.+.+.|+..
T Consensus 200 -~p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~----~~~~~i~~~~~~~G~~~ 251 (278)
T 2frn_A 200 -YVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-PR----EPFETFKRITKEYGYDV 251 (278)
T ss_dssp -CCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-TT----TTHHHHHHHHHHTTCEE
T ss_pred -CchhHHHHHHHHHHHCCCCeEEEEEEeeccccc-cc----cHHHHHHHHHHHcCCee
Confidence 223446789999999999999999875432100 00 13567778888888754
No 166
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.32 E-value=3.6e-13 Score=109.55 Aligned_cols=91 Identities=9% Similarity=-0.040 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCC-CCCCCCchhHHHHHHhhc
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHR-QPFDDETFDFEFSNVFDH 173 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~-~~~~~~~fD~V~~~~l~h 173 (257)
++.+|||+|||+|.++..++..+..+|+|+|+|+. ++.++++|+.+ ++..+++||+|+++.-.|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 56899999999999999877776569999999965 35678888776 455667899999863334
Q ss_pred cccHHHHHHHHHH--hccCCcEEEEEecc
Q 025148 174 ALYPDKFVMEIER--TLKPGGVCVLHVAL 200 (257)
Q Consensus 174 ~~~~~~~l~~~~r--~LkpgG~l~i~~~~ 200 (257)
..+..++++++.+ +|||||++++.+..
T Consensus 134 ~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 5677788888876 59999999998753
No 167
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.31 E-value=4.6e-12 Score=107.09 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=72.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------C---------CcEEEecCCCC-------CCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------P---------PLVIEGDFHRQ-------PFDDE 161 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------~---------~~~~~~d~~~~-------~~~~~ 161 (257)
.++.+|||+|||+|.++..+++. +..+|+|+|+++. . +.++++|+.+. +++++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 56789999999999999999986 3569999999864 1 56788999887 35678
Q ss_pred chhHHHHH-Hhh------------------ccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 162 TFDFEFSN-VFD------------------HALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 162 ~fD~V~~~-~l~------------------h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+||+|++| .+. .......+++++.++|||||.+++..+.
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 99999987 111 1124678899999999999999998753
No 168
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.31 E-value=1.1e-12 Score=104.90 Aligned_cols=88 Identities=9% Similarity=-0.037 Sum_probs=70.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
+.+.++|||+|||+|.++..++.. +..+|+|+|+|+. ...+...|.... .+.++||+|++ +++
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKML 125 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCH
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHH
Confidence 366889999999999999999875 5669999999976 113444555544 45678999988 699
Q ss_pred hccccHHHHHHHHHHhccCCcEEEE
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
||+.+.+..+..+.+.|||||+++-
T Consensus 126 HlL~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 126 PVLKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp HHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred HhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 9997777888899999999987654
No 169
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=99.31 E-value=2e-12 Score=111.89 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=68.8
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecC----CCC-------------CCcEEEe-cCCCCCCCCCchh
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDL----VPY-------------PPLVIEG-DFHRQPFDDETFD 164 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~----s~~-------------~~~~~~~-d~~~~~~~~~~fD 164 (257)
..+..++++.+|||+|||+|.++..+++. ++|+|+|+ ++. .+.++++ |+.+++ +++||
T Consensus 75 ~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD 150 (305)
T 2p41_A 75 VERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCD 150 (305)
T ss_dssp HHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred HHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCC
Confidence 33455678899999999999999999987 48999998 331 1345555 666554 56899
Q ss_pred HHHHHH-h---hccccHH---HHHHHHHHhccCCcEEEEEec
Q 025148 165 FEFSNV-F---DHALYPD---KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 165 ~V~~~~-l---~h~~~~~---~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+|+|+. . ++..+.. .++.++.++|||||.+++.+.
T Consensus 151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999962 2 2222332 478999999999999999764
No 170
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=1.4e-12 Score=106.46 Aligned_cols=87 Identities=23% Similarity=0.193 Sum_probs=70.0
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
.+.++.+|||+|||+|.++..+++.. ..+|+++|+++. ++.+..+|.......+++||+|+++
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 153 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTT 153 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence 45678899999999999999998863 269999999965 3567777875433236789999884
Q ss_pred -HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 -VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 -~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++|+. +++.++|||||.+++.++
T Consensus 154 ~~~~~~~------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 154 AAGPKIP------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp SBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CchHHHH------HHHHHHcCCCcEEEEEEC
Confidence 888776 488999999999999885
No 171
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.29 E-value=1.2e-11 Score=109.01 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=94.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC--------------CCCcEEEecCCCCCCCCCchhHHHH-HHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP--------------YPPLVIEGDFHRQPFDDETFDFEFS-NVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--------------~~~~~~~~d~~~~~~~~~~fD~V~~-~~l 171 (257)
+....+|||||||+|.++..+++. +..+++..|..+ .++.++.+|+.+.+.++ +|+|++ +++
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~--~D~~~~~~vl 254 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE--ADLYILARVL 254 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCC--CSEEEEESSG
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCC--ceEEEeeeec
Confidence 356679999999999999999885 677888888631 15788999998766553 699877 699
Q ss_pred hccccH--HHHHHHHHHhccCCcEEEEEeccCCC--cC------------cCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 172 DHALYP--DKFVMEIERTLKPGGVCVLHVALSKR--AD------------KYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 172 ~h~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~------------~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
|+..+. .+++++++++|+|||.++|....... .. ......-++..++.++++++||..++...
T Consensus 255 h~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~ 333 (353)
T 4a6d_A 255 HDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKK 333 (353)
T ss_dssp GGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 998876 46799999999999999987542111 00 01112345889999999999999887665
No 172
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.29 E-value=1.5e-14 Score=120.51 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=92.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
++.+|||+|||+|.++..+++.+ .+|+|+|+|+. ++.++++|+.+.+ ++++||+|+++ .++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 68899999999999999999987 69999999965 3578888888776 56789999996 888
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEeccCCC-cCcCCCCCcCChhHHHHhcccCCcEEEEEec
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHVALSKR-ADKYSANDLFSVKPLVKLFKRSEMVRVRKVD 234 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~ 234 (257)
|..++...+.+++++|||||.+++....... ...+......+.+.+.+++...|...+....
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~ 218 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNF 218 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEE
T ss_pred CcchhhhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEehh
Confidence 8888777888999999999997765421000 0001111233677888888888776666554
No 173
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.28 E-value=2.1e-12 Score=113.43 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=85.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
..+.+|||+|||+|.++..+++.+ ..+|+|+|+|+. ...+..+|..+.+ +++||+|+++ .++
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFH 272 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCcc
Confidence 456799999999999999999864 459999999965 2456777876543 6789999996 665
Q ss_pred c-----cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCC
Q 025148 173 H-----ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFG 237 (257)
Q Consensus 173 h-----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~ 237 (257)
+ ..+..++++++.++|||||.+++..+... . ....+.+.|.. +..+....||.
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~-------~~~~l~~~f~~--~~~~~~~~gf~ 330 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL---P-------YPDVLDETFGF--HEVIAQTGRFK 330 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS---S-------HHHHHHHHHSC--CEEEEECSSEE
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC---C-------cHHHHHHhcCc--eEEEeeCCCEE
Confidence 3 45678899999999999999999875322 1 13345555553 34455556776
No 174
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.28 E-value=1.6e-12 Score=112.94 Aligned_cols=90 Identities=20% Similarity=0.182 Sum_probs=73.4
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
...++++.+|||||||+|.++..+++.+ .++|+|+|+|+. ++.+..+|..+.+.++++||+|+
T Consensus 70 ~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv 149 (317)
T 1dl5_A 70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIF 149 (317)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred hcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEE
Confidence 3345788999999999999999998863 246999999965 36778888887655667899998
Q ss_pred HH-HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SN-VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++ +++|+. +++.+.|||||++++.+..
T Consensus 150 ~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 150 VTVGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred EcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 85 888876 5788999999999998653
No 175
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=99.28 E-value=4.3e-12 Score=108.73 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=83.3
Q ss_pred cCCCCCeEEEECCCC------CHHHHHHHH-cC-CCcEEEecCCCC--CCcE-EEecCCCCCCCCCchhHHHHHHhhc--
Q 025148 107 LLSNESKALCIGARV------GQEVEALKR-VG-VSDSVGIDLVPY--PPLV-IEGDFHRQPFDDETFDFEFSNVFDH-- 173 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~------G~~~~~l~~-~~-~~~v~gvD~s~~--~~~~-~~~d~~~~~~~~~~fD~V~~~~l~h-- 173 (257)
.++++.+|||+|||+ |. ..+++ .+ .++|+|+|+++. ++.+ +++|+.+.+++ ++||+|+|+...+
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~ 136 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTA-NKWDLIISDMYDPRT 136 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCS-SCEEEEEECCCCCC-
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCcc-CcccEEEEcCCcccc
Confidence 457889999999955 55 33444 34 469999999986 5678 99999988765 6799999863221
Q ss_pred ----------cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 174 ----------ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 174 ----------~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
....+++++++.++|||||.+++.+.... ...++...+++.||..+...
T Consensus 137 g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 137 KHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------WNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp --CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------CCHHHHHHHTTEEEEEEEEE
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------CHHHHHHHHHHcCCcEEEEE
Confidence 11234789999999999999999774322 24577888888888766655
No 176
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.27 E-value=8e-12 Score=107.02 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=84.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCch---hHHHHH-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETF---DFEFSN- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~f---D~V~~~- 169 (257)
++.+|||+|||+|.++..+++.+..+|+|+|+|+. .+.++++|+.+. ++ ++| |+|++|
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnP 200 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNP 200 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcC
Confidence 56799999999999999998875569999999965 267888888763 33 479 999986
Q ss_pred -Hhh----------ccc--------cHHHHHHHHH-HhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 170 -VFD----------HAL--------YPDKFVMEIE-RTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 170 -~l~----------h~~--------~~~~~l~~~~-r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
.+. |-+ +...+++++. +.|+|||++++.++.. ..+.+.+++.+.
T Consensus 201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~------------q~~~v~~~~~~~---- 264 (284)
T 1nv8_A 201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED------------QVEELKKIVSDT---- 264 (284)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT------------CHHHHTTTSTTC----
T ss_pred CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch------------HHHHHHHHHHhC----
Confidence 110 111 1236889999 9999999999987432 355677777765
Q ss_pred EEEecCCCCceEEEEEcc
Q 025148 230 VRKVDGFGLDTEVVFRKN 247 (257)
Q Consensus 230 ~~~~~gf~~~~~vv~~k~ 247 (257)
....+-.+.++.++.+++
T Consensus 265 ~~~~D~~g~~R~~~~~~k 282 (284)
T 1nv8_A 265 VFLKDSAGKYRFLLLNRR 282 (284)
T ss_dssp EEEECTTSSEEEEEEECC
T ss_pred CeecccCCCceEEEEEEc
Confidence 222333344455555443
No 177
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.27 E-value=1.9e-11 Score=107.72 Aligned_cols=116 Identities=15% Similarity=-0.044 Sum_probs=88.0
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhH
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
+......++.+|||+|||+|.++..++.. +..+++|+|+++. .+.+.++|+.+++.+.+.||+
T Consensus 196 ~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~ 275 (354)
T 3tma_A 196 LRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDR 275 (354)
T ss_dssp HHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSE
T ss_pred HHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCE
Confidence 33444567889999999999999999885 3469999999965 478999999998887788999
Q ss_pred HHHH-Hhh-------c-cccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 166 EFSN-VFD-------H-ALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 166 V~~~-~l~-------h-~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
|++| -+. + .....++++++.++|||||.+++.++ +...+..+.+ .++......
T Consensus 276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~--------------~~~~~~~~~~-~g~~~~~~~ 337 (354)
T 3tma_A 276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL--------------RPALLKRALP-PGFALRHAR 337 (354)
T ss_dssp EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES--------------CHHHHHHHCC-TTEEEEEEE
T ss_pred EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC--------------CHHHHHHHhh-cCcEEEEEE
Confidence 9986 111 1 11236788999999999999999886 2334555556 777655544
No 178
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.26 E-value=1.2e-11 Score=105.63 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecC-CCC-------------------------CCcEEEecCCCC--CC--
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDL-VPY-------------------------PPLVIEGDFHRQ--PF-- 158 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~-s~~-------------------------~~~~~~~d~~~~--~~-- 158 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+ ++. ++.+...+..+. .+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 567899999999999999999877569999999 654 122332332221 11
Q ss_pred --CCCchhHHHH-HHhhccccHHHHHHHHHHhcc---C--CcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCC-cEE
Q 025148 159 --DDETFDFEFS-NVFDHALYPDKFVMEIERTLK---P--GGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSE-MVR 229 (257)
Q Consensus 159 --~~~~fD~V~~-~~l~h~~~~~~~l~~~~r~Lk---p--gG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~-~~~ 229 (257)
++++||+|++ ++++|..+...+++++.++|| | ||.+++........ .......+...+.+.| |..
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~------~~~~~~~~~~~l~~~G~f~v 231 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPH------LAERDLAFFRLVNADGALIA 231 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------------CTHHHHHHHHSTTEEE
T ss_pred hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc------cchhHHHHHHHHHhcCCEEE
Confidence 3578999988 799999999999999999999 9 99987764321100 0012345666677778 654
Q ss_pred EEE
Q 025148 230 VRK 232 (257)
Q Consensus 230 ~~~ 232 (257)
...
T Consensus 232 ~~~ 234 (281)
T 3bzb_A 232 EPW 234 (281)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 179
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.26 E-value=3e-12 Score=107.26 Aligned_cols=89 Identities=9% Similarity=0.061 Sum_probs=68.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC-----------C-----------------------------
Q 025148 109 SNESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY-----------P----------------------------- 145 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~-----------~----------------------------- 145 (257)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+. .
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 35679999999999999999875 3458999999965 2
Q ss_pred ----Cc-------------EEEecCCCCCC-----CCCchhHHHHH-Hhhcc---------ccHHHHHHHHHHhccCCcE
Q 025148 146 ----PL-------------VIEGDFHRQPF-----DDETFDFEFSN-VFDHA---------LYPDKFVMEIERTLKPGGV 193 (257)
Q Consensus 146 ----~~-------------~~~~d~~~~~~-----~~~~fD~V~~~-~l~h~---------~~~~~~l~~~~r~LkpgG~ 193 (257)
+. +.++|+.+... .+++||+|+|+ .+.+. .....+++++.++|||||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 34 78888876421 34589999996 33332 3355889999999999999
Q ss_pred EEEE
Q 025148 194 CVLH 197 (257)
Q Consensus 194 l~i~ 197 (257)
+++.
T Consensus 210 l~~~ 213 (250)
T 1o9g_A 210 IAVT 213 (250)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9993
No 180
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.26 E-value=4.1e-12 Score=116.37 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=73.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCC---------------CCCcEEEecCCCCCCCCCchhHHHHH-Hh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP---------------YPPLVIEGDFHRQPFDDETFDFEFSN-VF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~---------------~~~~~~~~d~~~~~~~~~~fD~V~~~-~l 171 (257)
..++.+|||||||+|.++..+++.+..+|+|+|+|+ .++.++.+|+.+++++ ++||+|+|+ .+
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 234 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCH
T ss_pred hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCch
Confidence 456789999999999999999988777999999986 2467899999987765 479999997 55
Q ss_pred hccc--cHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHAL--YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~--~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+. +..+.+.++.++|||||.+++..
T Consensus 235 ~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 235 YMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 6664 33567788899999999998643
No 181
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.24 E-value=6.7e-12 Score=113.13 Aligned_cols=97 Identities=16% Similarity=0.053 Sum_probs=72.7
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------------------CCcEEEecCCCC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------------------PPLVIEGDFHRQ 156 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------------------~~~~~~~d~~~~ 156 (257)
++....+.++.+|||||||+|.++..+++. +..+|+|+|+++. ++.++.+|....
T Consensus 234 ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~ 313 (433)
T 1u2z_A 234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD 313 (433)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccc
Confidence 333344578899999999999999999985 6568999999864 234455543322
Q ss_pred --CC--CCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 157 --PF--DDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 157 --~~--~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ ..++||+|+++ ++ +..+..++++++.++|||||.+++..+
T Consensus 314 ~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 314 NNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp CHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 22 24689999885 54 557788899999999999999998743
No 182
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.23 E-value=9e-12 Score=107.20 Aligned_cols=91 Identities=21% Similarity=0.221 Sum_probs=69.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------CCcEEEecCCCC-CCCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------------PPLVIEGDFHRQ-PFDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------------~~~~~~~d~~~~-~~~~~~fD~V 166 (257)
.++.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|..+. ...+++||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 45689999999999999999986 5568999999975 356788887664 3456789999
Q ss_pred HHHHhhccccH-----HHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSNVFDHALYP-----DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~~~~-----~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++...+.... .++++++.++|||||++++...
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 199 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEecC
Confidence 99744433211 6799999999999999999863
No 183
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.23 E-value=3.4e-12 Score=105.97 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=69.1
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCC-chhHHHHH-
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDE-TFDFEFSN- 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~-~fD~V~~~- 169 (257)
.+.++.+|||+|||+|.++..+++....+|+++|+++. ++.+..+|. ..+++++ .||+|+++
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTA 166 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECS
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECC
Confidence 45678899999999999999999863269999999965 356777776 3445444 49999884
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
+++++. +++.+.|||||++++.++..
T Consensus 167 ~~~~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 167 GAPKIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp BBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred cHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 777665 37889999999999998643
No 184
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.23 E-value=6e-12 Score=105.29 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=69.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC-----------------------CCcEEEecCCC-CC--CCC
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY-----------------------PPLVIEGDFHR-QP--FDD 160 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~-----------------------~~~~~~~d~~~-~~--~~~ 160 (257)
+.++.+|||||||+|.++..+++.+ ..+|+|+|+|+. ++.++.+|+.+ ++ +++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 3567899999999999999999864 568999999842 45678888876 45 667
Q ss_pred CchhHHHHHHhhccccH-------------HHHHHHHHHhccCCcEEEEEec
Q 025148 161 ETFDFEFSNVFDHALYP-------------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~-------------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++|.|+. +++++ .++++++.++|||||.+++.+.
T Consensus 127 ~~~d~v~~----~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 127 GQLSKMFF----CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp TCEEEEEE----ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccCEEEE----ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 78887753 23333 4799999999999999999764
No 185
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.23 E-value=6.7e-12 Score=109.81 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=70.4
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC--------------------------CCcEEEecCCCC-
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY--------------------------PPLVIEGDFHRQ- 156 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~--------------------------~~~~~~~d~~~~- 156 (257)
..+.++.+|||+|||+|.++..+++. + ..+|+|+|+++. ++.+..+|+.+.
T Consensus 101 l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 101 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 180 (336)
T ss_dssp HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence 34678899999999999999999985 4 369999999862 467788898876
Q ss_pred -CCCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 157 -PFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 157 -~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++++++||+|+++. .++..+++++.++|||||.+++..+.
T Consensus 181 ~~~~~~~fD~V~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 181 EDIKSLTFDAVALDM----LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp -------EEEEEECS----SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred cccCCCCeeEEEECC----CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 56677899998853 34556899999999999999998764
No 186
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.22 E-value=6.1e-13 Score=104.33 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC-C-C--CCCchhHHHHH-H
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ-P-F--DDETFDFEFSN-V 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~-~-~--~~~~fD~V~~~-~ 170 (257)
++.+|||+|||+|.++..+++.+. +|+|+|+|+. ++.+.++|+.+. + . .+++||+|+++ .
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 678999999999999999998765 5999999976 367777777653 2 1 13479999986 4
Q ss_pred hhccccHHHHHHHHH--HhccCCcEEEEEeccCC
Q 025148 171 FDHALYPDKFVMEIE--RTLKPGGVCVLHVALSK 202 (257)
Q Consensus 171 l~h~~~~~~~l~~~~--r~LkpgG~l~i~~~~~~ 202 (257)
++ .+..++++.+. ++|||||.+++.++...
T Consensus 120 ~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 120 YA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp TT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred Cc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 43 55667777777 99999999999886443
No 187
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.21 E-value=7.6e-12 Score=104.65 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=68.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCCCC-CC-----CCchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHRQP-FD-----DETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~~~-~~-----~~~fD~ 165 (257)
++.+|||||||+|..+..+++. ..++|+++|+++. ++.++.+|+.+.. .. +++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 5679999999999999999984 2579999999986 3567777776542 11 478999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++.- ..+...+++++.++|||||++++...
T Consensus 140 V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 140 IFIDAD--KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEESC--GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEcCC--hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 987522 34566789999999999999999653
No 188
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.21 E-value=5.3e-12 Score=109.13 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=84.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCCCC--CCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQPF--DDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~--~~~~fD~V 166 (257)
.++.+|||||||+|.++..+++. +..+|+++|+++. ++.++.+|+.+... ++++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 56789999999999999999986 4569999999954 35677788776543 47889999
Q ss_pred HHHHhhccc-cH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 167 FSNVFDHAL-YP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 167 ~~~~l~h~~-~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+++...+.. .. .+++++++++|||||++++...... + .......+.+.+++.||..+...
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~----~---~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW----L---DLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT----T---CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc----c---chHHHHHHHHHHHhCCCCcEEEE
Confidence 986433322 11 5789999999999999999864321 0 01135667777888888655443
No 189
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.21 E-value=2.8e-12 Score=105.46 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC----------------CCcEEEecCCC-CCC-C----CCchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY----------------PPLVIEGDFHR-QPF-D----DETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~-~----~~~fD~ 165 (257)
++.+|||||||+|..+..+++. ..++|+++|+++. .+.++.+|+.+ ++. . .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 5689999999999999999984 3569999999975 36778888754 222 2 268999
Q ss_pred HHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++ ..++..+..++++.+ ++|||||++++...
T Consensus 138 V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 138 VFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCC
Confidence 9885 566666667788888 99999999998643
No 190
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.20 E-value=4.1e-12 Score=104.88 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=72.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC-----------------CCcEEEecCCCC-
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY-----------------PPLVIEGDFHRQ- 156 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~-----------------~~~~~~~d~~~~- 156 (257)
.++..+......+++.+|||||||+|..+..+++. +.++|+++|+++. ++.++.+|+.+.
T Consensus 43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l 122 (221)
T 3dr5_A 43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM 122 (221)
T ss_dssp HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence 34444433332334559999999999999999884 3579999999965 256677776554
Q ss_pred -CCCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 157 -PFDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 157 -~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+++++||+|+++. ...+...+++++.+.|||||++++..
T Consensus 123 ~~~~~~~fD~V~~d~--~~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 123 SRLANDSYQLVFGQV--SPMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp GGSCTTCEEEEEECC--CTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred HHhcCCCcCeEEEcC--cHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 23468899998752 12345678999999999999999854
No 191
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=6.6e-12 Score=105.31 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=70.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCC-CCCC--CCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHR-QPFD--DETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~~--~~~fD~V~ 167 (257)
.++.+|||||||+|..+..+++. + .++|+|+|+++. ++.+..+|+.+ ++.. .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 35789999999999999999985 3 579999999965 36778888765 2322 34899998
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++. ...+...+++++.++|||||++++...
T Consensus 142 ~d~--~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 142 IDA--DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ECS--CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ECC--chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 742 234556789999999999999998754
No 192
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.19 E-value=2.6e-11 Score=102.72 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=80.6
Q ss_pred CeEEEECCCC--CHHHHHHHH--cCCCcEEEecCCCC---------------CCcEEEecCCCCCC----C--CCchh--
Q 025148 112 SKALCIGARV--GQEVEALKR--VGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF----D--DETFD-- 164 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~--~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~----~--~~~fD-- 164 (257)
.++||||||. +..+..+++ .+.++|+++|.|+. ++.++++|+.+.+. + .++||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~ 159 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT 159 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence 6899999997 334444443 36779999999965 25788999987521 1 34566
Q ss_pred ---HHHHH-Hhhcccc---HHHHHHHHHHhccCCcEEEEEeccCCCc--------CcC----CCCCcCChhHHHHhcccC
Q 025148 165 ---FEFSN-VFDHALY---PDKFVMEIERTLKPGGVCVLHVALSKRA--------DKY----SANDLFSVKPLVKLFKRS 225 (257)
Q Consensus 165 ---~V~~~-~l~h~~~---~~~~l~~~~r~LkpgG~l~i~~~~~~~~--------~~y----~~~~~~~~~~~~~~f~~~ 225 (257)
.|+++ +|||+.+ +..+++++.+.|+|||+|+++....+.. ..| ....+++.+++..+|.
T Consensus 160 ~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~f~-- 237 (277)
T 3giw_A 160 RPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEFFE-- 237 (277)
T ss_dssp SCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHTTT--
T ss_pred CcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHHhC--
Confidence 35664 9999987 5789999999999999999986432210 000 0124568899999995
Q ss_pred CcE
Q 025148 226 EMV 228 (257)
Q Consensus 226 ~~~ 228 (257)
||.
T Consensus 238 Gle 240 (277)
T 3giw_A 238 GLE 240 (277)
T ss_dssp TSE
T ss_pred CCc
Confidence 554
No 193
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.18 E-value=4.8e-12 Score=105.03 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=70.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC-C-CCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-FDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~~~~~fD~V~~~ 169 (257)
.++.+|||||||+|..+..+++. +..+|+|+|+++. ++.++.+|+.+. + ..+++||+|+++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 35789999999999999999984 3569999999964 467888988764 3 336789999875
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ...+...+++++.+.|||||++++..
T Consensus 150 ~--~~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 150 A--AKAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp T--TSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred C--cHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 2 23456679999999999999998854
No 194
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.17 E-value=2e-11 Score=106.08 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=81.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|..+..+++. +.++|+|+|+++. ++.++++|+.+++..+++||+|+++
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 567889999999999999999985 3469999999966 3577888888776556789998763
Q ss_pred ------Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCc
Q 025148 170 ------VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 170 ------~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~ 227 (257)
++.+.++ ..++++++.++|||||+++++++.... -.....+..++++.++
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~--------~Ene~~v~~~l~~~~~ 267 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP--------EENEFVIQWALDNFDV 267 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG--------GGTHHHHHHHHHHSSE
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh--------HHhHHHHHHHHhcCCC
Confidence 2322221 257889999999999999998863211 0123345566666665
Q ss_pred EE
Q 025148 228 VR 229 (257)
Q Consensus 228 ~~ 229 (257)
..
T Consensus 268 ~~ 269 (315)
T 1ixk_A 268 EL 269 (315)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 195
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.17 E-value=2e-11 Score=99.42 Aligned_cols=86 Identities=15% Similarity=0.085 Sum_probs=68.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC-CCCCCchhHHHHHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ-PFDDETFDFEFSNV 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~-~~~~~~fD~V~~~~ 170 (257)
++.+|||+|||+|..+..+++. + ..+|+++|+++. .+.++.+|..+. +..++ ||+|+++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 5679999999999999999985 3 569999999965 256778887653 44456 99998762
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...+...+++++.++|||||++++..
T Consensus 135 --~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 --DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp --TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred --ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 23466789999999999999999864
No 196
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.16 E-value=1.4e-11 Score=101.43 Aligned_cols=87 Identities=24% Similarity=0.325 Sum_probs=70.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC--------------------CCcEEEecCCCCCCCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~ 165 (257)
+.++.+|||+|||+|..+..+++. + ..+|+|+|+++. ++.+..+|....+..+++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 567889999999999999999885 3 359999999864 356778888766656778999
Q ss_pred HHHH-HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 166 EFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 166 V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
|+++ .++++ ++++.++|||||++++.++.
T Consensus 155 i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVV------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHH------HHHHHHhcCCCcEEEEEEec
Confidence 9885 66544 46889999999999998853
No 197
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.15 E-value=3.4e-11 Score=99.64 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=87.9
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
...++++.+|||||||+|.++..+++.+ ..+|+|+|+++. .+.+..+|..+...+++.||+|+
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Iv 95 (230)
T 3lec_A 16 ANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTIT 95 (230)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred HHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEE
Confidence 4456788999999999999999999975 458999999966 36788999887765555799864
Q ss_pred -HHHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 168 -SNVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 168 -~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++..- .-..+++.+..+.|+++|.++++-- . ....+++++.+.||....+.
T Consensus 96 iaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~-~------------~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 96 ICGMGG--RLIADILNNDIDKLQHVKTLVLQPN-N------------REDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp EEEECH--HHHHHHHHHTGGGGTTCCEEEEEES-S------------CHHHHHHHHHHTTEEEEEEE
T ss_pred EeCCch--HHHHHHHHHHHHHhCcCCEEEEECC-C------------ChHHHHHHHHHCCCEEEEEE
Confidence 44211 0122678888899999999998752 1 47789999999999776655
No 198
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.15 E-value=2.6e-11 Score=99.77 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=70.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcC------CCcEEEecCCCC--------------------CCcEEEecCCCCC---
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVG------VSDSVGIDLVPY--------------------PPLVIEGDFHRQP--- 157 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~--------------------~~~~~~~d~~~~~--- 157 (257)
.+.++.+|||||||+|.++..+++.. ..+|+|+|+++. ++.+..+|..+..
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 35678899999999999999998863 259999999854 3567888887755
Q ss_pred -CCCCchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 158 -FDDETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 158 -~~~~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..+++||+|+++ .++|+ ++++.+.|||||++++.++
T Consensus 157 ~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence 556789999885 66654 4788999999999999886
No 199
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.14 E-value=2.3e-11 Score=99.89 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=68.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC-C-CCC----CchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-FDD----ETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~~~----~~fD~ 165 (257)
++.+|||+|||+|..+..+++. + ..+|+++|+++. .+.++++|..+. + +.+ ++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 5679999999999999999985 3 579999999965 366788887543 1 111 78999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++. ...+...+++++.++|||||++++...
T Consensus 144 v~~~~--~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 144 IYIDA--DKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEECS--CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEECC--CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 98642 133567899999999999999999754
No 200
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.14 E-value=1.2e-11 Score=106.99 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=70.8
Q ss_pred CeEEEECCCCCHHHHHHHH-cCCCcEEEecCCCC---------------CCcEEEecCCCC--CCCCCchhHHHHHHhhc
Q 025148 112 SKALCIGARVGQEVEALKR-VGVSDSVGIDLVPY---------------PPLVIEGDFHRQ--PFDDETFDFEFSNVFDH 173 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~l~h 173 (257)
.+|||||||+|.++..+++ .+..+|+++|+++. ++.++.+|..+. .+++++||+|+++...+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999998 56669999999965 356778887664 34568899999875444
Q ss_pred cc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 174 AL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 174 ~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.. ...+++++++++|||||++++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 32 126899999999999999999874
No 201
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.14 E-value=5.9e-11 Score=95.81 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=64.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCCCCCchhHHHHH-Hhhcccc
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPFDDETFDFEFSN-VFDHALY 176 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h~~~ 176 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.++++|+.+++ ++||+|+++ .++|..+
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 4567899999999999999999876557999999965 4788999998865 689999996 6777653
Q ss_pred --HHHHHHHHHHhccCCcEEEE
Q 025148 177 --PDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 177 --~~~~l~~~~r~LkpgG~l~i 196 (257)
..++++++.+.+ |+++++
T Consensus 126 ~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp --CHHHHHHHHHHE--EEEEEE
T ss_pred chhHHHHHHHHHhc--CcEEEE
Confidence 346889999998 443333
No 202
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=99.13 E-value=1.2e-10 Score=103.38 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=85.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCC-CcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGV-SDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|.++..++..+. ++|+|+|+|+. .+.+.++|+.++++++++||+|++|
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 57788999999999999999998753 48999999965 4688999999999888899999996
Q ss_pred Hh-------hcccc-HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 170 VF-------DHALY-PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 170 ~l-------~h~~~-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
.+ +++.+ ..++++++.++| ||.+++.++ +...+.+.+.+.|+......
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------~~~~~~~~~~~~G~~~~~~~ 350 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------EKKAIEEAIAENGFEIIHHR 350 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------CHHHHHHHHHHTTEEEEEEE
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------CHHHHHHHHHHcCCEEEEEE
Confidence 21 11222 256788999999 566555554 46778888888888765543
No 203
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.13 E-value=1.3e-11 Score=102.11 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=70.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC-CCC--CCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ-PFD--DETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~-~~~--~~~fD~V~~ 168 (257)
.++.+|||+|||+|..+..+++. +..+|+++|+++. .+.+..+|+.+. +.. +++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 35789999999999999999986 3569999999965 356777777764 322 578999988
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+... .+..++++++.++|||||++++..
T Consensus 133 ~~~~--~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAK--GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGG--SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCH--HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 5322 267789999999999999999974
No 204
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.11 E-value=1.8e-11 Score=104.24 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=72.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCC----CCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPF----DDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~----~~~~fD~V 166 (257)
..++.+|||+|||+|..+..+++. +..+|+|+|+++. ++.++.+|+.+.+. .+++||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 467889999999999999999884 4369999999965 35677788776654 26789998
Q ss_pred HHH-------Hhh------------ccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 167 FSN-------VFD------------HALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 167 ~~~-------~l~------------h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+++ ++. +.....++++++.+.|||||.++++++.
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 775 111 1235578899999999999999998864
No 205
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.11 E-value=5.8e-11 Score=99.05 Aligned_cols=110 Identities=10% Similarity=-0.007 Sum_probs=86.2
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 167 (257)
...+.++.+|||||||+|.++..+++.+ ..+|+|+|+++. .+.+..+|..+...++++||+|+
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iv 95 (244)
T 3gnl_A 16 ASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIV 95 (244)
T ss_dssp HTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred HHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEE
Confidence 4556788999999999999999999975 458999999976 36788899887655444699865
Q ss_pred -HH----HhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 168 -SN----VFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 168 -~~----~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
++ ++. +++.+..+.|+++|+++++-- . ....+++++.+.||....+.
T Consensus 96 iagmGg~lI~------~IL~~~~~~L~~~~~lIlq~~-~------------~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 96 IAGMGGTLIR------TILEEGAAKLAGVTKLILQPN-I------------AAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp EEEECHHHHH------HHHHHTGGGGTTCCEEEEEES-S------------CHHHHHHHHHHHTEEEEEEE
T ss_pred EeCCchHHHH------HHHHHHHHHhCCCCEEEEEcC-C------------ChHHHHHHHHHCCCEEEEEE
Confidence 43 343 678888999999999999752 1 47789999999998764443
No 206
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.10 E-value=6.3e-11 Score=97.80 Aligned_cols=113 Identities=11% Similarity=-0.028 Sum_probs=84.4
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC----------------CCcEEEecCCC-CCCCCCchhHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY----------------PPLVIEGDFHR-QPFDDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~----------------~~~~~~~d~~~-~~~~~~~fD~V 166 (257)
...+.++.+|||||||+|.++..+++.+ ..+|+|+|+++. .+.+..+|..+ ++. ++.||+|
T Consensus 10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~I 88 (225)
T 3kr9_A 10 ASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVI 88 (225)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEE
T ss_pred HHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEE
Confidence 4456788899999999999999999974 568999999966 35788888754 332 2269986
Q ss_pred HH-HHhhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 167 FS-NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 167 ~~-~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
+. +.-. .-..+++.+..+.|+++|+++++-- . ....+++++.+.||....+.
T Consensus 89 viaG~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~-~------------~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 89 TIAGMGG--RLIARILEEGLGKLANVERLILQPN-N------------REDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp EEEEECH--HHHHHHHHHTGGGCTTCCEEEEEES-S------------CHHHHHHHHHHTTEEEEEEE
T ss_pred EEcCCCh--HHHHHHHHHHHHHhCCCCEEEEECC-C------------CHHHHHHHHHHCCCEEEEEE
Confidence 54 3111 0123788899999999999999652 1 47789999999999776654
No 207
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.10 E-value=2.7e-11 Score=103.00 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=73.3
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
.+.++.+|||+|||+|.++..+++. +.++|+|+|+++. ++.++.+|+.+.+. +++||+|+++.
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~ 194 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGY 194 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECC
Confidence 3578899999999999999999986 4569999999964 45788999988743 67899998862
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
-. +..+++.++.+.|||||+++++..
T Consensus 195 p~---~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 195 VH---KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp CS---SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred cc---cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 11 566789999999999999998864
No 208
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.10 E-value=1.5e-11 Score=106.01 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=68.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCC-CCCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHR-QPFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 167 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+ ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999987 5679999999854 34567777654 233457899999
Q ss_pred HHHhhc-cc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDH-AL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h-~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++..++ .. ...++++++.++|||||++++.+.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 874443 22 236889999999999999999864
No 209
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.10 E-value=1.3e-11 Score=105.22 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=71.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCC-CCCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHR-QPFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 167 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+ ++..+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 45689999999999999999987 5679999999854 34667777665 233457899999
Q ss_pred HHHhhcccc-----HHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDHALY-----PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++...+... ..+++++++++|||||++++...
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 975544321 26899999999999999999863
No 210
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.09 E-value=3.9e-11 Score=98.97 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=68.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-C------CCcEEEecCCCC--------------------CCcEEEecCCCCCCCC
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-G------VSDSVGIDLVPY--------------------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~------~~~v~gvD~s~~--------------------~~~~~~~d~~~~~~~~ 160 (257)
+.++.+|||+|||+|.++..+++. + ..+|+++|+++. ++.+..+|..+ ++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCc
Confidence 567889999999999999999884 3 258999999964 35677888776 4444
Q ss_pred -CchhHHHHH-HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 161 -ETFDFEFSN-VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 161 -~~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++||+|+++ .++|+. +++.+.|||||++++.+.
T Consensus 161 ~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp GCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 789999884 777654 788999999999999885
No 211
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.09 E-value=2.3e-11 Score=99.90 Aligned_cols=89 Identities=19% Similarity=0.120 Sum_probs=68.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC--CCC---CCchhH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ--PFD---DETFDF 165 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~--~~~---~~~fD~ 165 (257)
.++.+|||||||+|..+..+++. + .++|+++|+++. .+.++.+|+.+. .++ .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 35789999999999999999986 3 569999999965 356778887543 111 257999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++.. ..+...+++++.++|||||++++...
T Consensus 137 v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 137 IFIDAD--KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEECSC--GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEcCC--cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 987522 23456889999999999999988754
No 212
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.07 E-value=1.8e-11 Score=107.02 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCCC----CCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPF----DDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~----~~~~fD~V~ 167 (257)
.++.+|||+|||+|.++..+++.+. +|+++|+|+. .+.++++|+.+... .+++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4678999999999999999998766 9999999965 15677777766421 156899998
Q ss_pred HH--H---------hhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN--V---------FDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~--~---------l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ . +++..+..++++++.++|||||++++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 85 1 22344667899999999999999887764
No 213
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.05 E-value=6.9e-11 Score=103.40 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=70.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC--CCCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ--PFDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~--~~~~~~fD~V 166 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+. ..++++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 56689999999999999999986 4569999999854 356677777653 2346789999
Q ss_pred HHHHhhcc---c--cHHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHA---L--YPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~---~--~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+++..++. . ...++++++.++|||||++++..
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 98643211 1 14689999999999999999975
No 214
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.05 E-value=4.8e-10 Score=90.75 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=75.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
..++.+|||+|||+|.++..+++.+..+|+|+|+++. ++.++++|+.+++ ++||+|+++ .++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 3567899999999999999999886668999999965 3567888888864 479999997 444
Q ss_pred ccc--cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 173 HAL--YPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 173 h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+.. ...++++++.+++ ||.+++.++... +...+.+.+.+.|+.
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~~-----------~~~~~~~~l~~~g~~ 168 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIHLAKPE-----------VRRFIEKFSWEHGFV 168 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEEECCHH-----------HHHHHHHHHHHTTEE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEEeCCcC-----------CHHHHHHHHHHCCCe
Confidence 332 3356888999988 665555432211 234456677777764
No 215
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=99.05 E-value=7.8e-10 Score=99.24 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=82.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCCC------CcEEEecCCCCCCCCCchhHHHHH--H--hhc---
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPYP------PLVIEGDFHRQPFDDETFDFEFSN--V--FDH--- 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~------~~~~~~d~~~~~~~~~~fD~V~~~--~--l~h--- 173 (257)
.++.+|||+|||+|.++..+++. +..+++|+|+++.. +.+.++|+.+... +++||+|++| . ...
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~ 116 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASK 116 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCc-cCCCCEEEECcCccCcccccc
Confidence 35679999999999999999875 45699999999874 4577888887653 4689999986 1 111
Q ss_pred ----ccc-------------------HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEE
Q 025148 174 ----ALY-------------------PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRV 230 (257)
Q Consensus 174 ----~~~-------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~ 230 (257)
+.+ ...+++.+.+.|||||.+++.+|...... . ....+++.+.+.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~---~----~~~~lr~~l~~~~~~~i 189 (421)
T 2ih2_A 117 YPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL---E----DFALLREFLAREGKTSV 189 (421)
T ss_dssp CSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC---G----GGHHHHHHHHHHSEEEE
T ss_pred cccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcC---c----cHHHHHHHHHhcCCeEE
Confidence 111 12568899999999999999998532111 1 24567777766665444
Q ss_pred EE
Q 025148 231 RK 232 (257)
Q Consensus 231 ~~ 232 (257)
..
T Consensus 190 ~~ 191 (421)
T 2ih2_A 190 YY 191 (421)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 216
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=99.05 E-value=2.4e-11 Score=105.87 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=69.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
..+.+|||||||+|.++..+++. +..+|+++|+++. ++.++.+|+.+. +..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45689999999999999999986 5679999999854 245667776542 22357899999
Q ss_pred HHHhhccc---c--HHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDHAL---Y--PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h~~---~--~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++..++.. . ..++++++.++|||||++++...
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 87443321 1 16899999999999999999864
No 217
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=99.04 E-value=9.8e-11 Score=99.08 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=66.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
..+.+|||||||+|..+..+++.+ .+|+++|+++. ++.++.+|..+.. ++||+|+++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 456799999999999999888776 79999999854 2345566665543 689999886
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
..+|..+++++.+.|||||++++...
T Consensus 147 ----~~dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 147 ----QEPDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp ----SCCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ----CCChHHHHHHHHHhcCCCcEEEEEcC
Confidence 34566799999999999999999753
No 218
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=99.04 E-value=2.5e-11 Score=105.42 Aligned_cols=90 Identities=18% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------CCcEEEecCCC-CCCCCCchhHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------------PPLVIEGDFHR-QPFDDETFDFE 166 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------------~~~~~~~d~~~-~~~~~~~fD~V 166 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+ ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45689999999999999999986 4569999999854 24566777665 23346789999
Q ss_pred HHHHhhcc---cc-----HHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHA---LY-----PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~---~~-----~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+++...|. .. ..+++++++++|||||++++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99755544 11 3689999999999999999975
No 219
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.04 E-value=2e-10 Score=103.78 Aligned_cols=93 Identities=20% Similarity=0.196 Sum_probs=74.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCC--CCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQP--FDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~--~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|..+..+++. +.++|+|+|+++. .+.+..+|..+.+ +++++||+|+++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 467889999999999999999986 3469999999987 3577888888775 566789998742
Q ss_pred ------HhhccccH----------------HHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ------VFDHALYP----------------DKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ------~l~h~~~~----------------~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+.++. .++++++.+.|||||+++++++.
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 44443332 47789999999999999998863
No 220
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.04 E-value=3.6e-11 Score=100.80 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC-C-C-----CCCch
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-F-----DDETF 163 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~-----~~~~f 163 (257)
.++.+|||||||+|..+..+++. + .++|+++|+++. ++.++.+|..+. + + ++++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 35679999999999999999885 3 579999999976 245777877653 2 2 25789
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+|+++.- ..+...+++++.++|||||++++..
T Consensus 158 D~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD--KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC--STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc--hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99987521 2356789999999999999999864
No 221
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.03 E-value=3.5e-10 Score=100.35 Aligned_cols=90 Identities=16% Similarity=0.065 Sum_probs=69.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCC-CcEEEecCCCC---------------CCcEEEecCCC-CCC-CCCchhHHHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGV-SDSVGIDLVPY---------------PPLVIEGDFHR-QPF-DDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~---------------~~~~~~~d~~~-~~~-~~~~fD~V~~~~ 170 (257)
.++.+|||+| |+|.++..++..+. .+|+|+|+++. ++.++.+|+.+ ++. .+++||+|+++.
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 3578999999 99999999988753 69999999965 36788999988 653 356899999862
Q ss_pred hhccccHHHHHHHHHHhccCCc-EEEEEec
Q 025148 171 FDHALYPDKFVMEIERTLKPGG-VCVLHVA 199 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG-~l~i~~~ 199 (257)
..+.....++++++.++||||| .+++++.
T Consensus 250 p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 PETLEAIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CSSHHHHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCchHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence 1122235788999999999999 4466653
No 222
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.03 E-value=2.3e-11 Score=105.54 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~ 167 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+. +..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 45689999999999999999886 4579999999854 234566665542 23467899999
Q ss_pred HHHhhccccH-----HHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHALYP-----DKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~~~-----~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++..++.... .++++++.++|||||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8755544321 578999999999999999976
No 223
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.03 E-value=6.6e-11 Score=102.28 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=68.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCC-CCCCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHR-QPFDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 167 (257)
..+.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+ ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 56689999999999999999986 4569999999854 24567777654 233467899999
Q ss_pred HHHhhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++...+.. ...++++++.++|||||++++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 87444332 234689999999999999999763
No 224
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=99.02 E-value=2e-11 Score=102.18 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=70.0
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCC-CchhHHHHH--
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDD-ETFDFEFSN-- 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~-~~fD~V~~~-- 169 (257)
..+.++.+|||+|||+|.++..+++.+ .+|+|+|+++. ++.++++|+.++++++ ++| .|++|
T Consensus 25 ~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~P 102 (245)
T 1yub_A 25 LNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIP 102 (245)
T ss_dssp CCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECC
T ss_pred cCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCC
Confidence 335678899999999999999999876 69999999976 2457788888888764 678 44433
Q ss_pred ----------HhhccccHHHHH----HHHHHhccCCcEEEEEec
Q 025148 170 ----------VFDHALYPDKFV----MEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 170 ----------~l~h~~~~~~~l----~~~~r~LkpgG~l~i~~~ 199 (257)
+++|.......+ +.+.|+|||||.+.+.+.
T Consensus 103 y~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 103 YHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp SSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred ccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 344444455556 779999999999887653
No 225
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=99.01 E-value=1e-10 Score=100.16 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=66.9
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCch
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETF 163 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~f 163 (257)
..++....+.++.+|||||||+|.++..+++.+. +|+|+|+++. ++.++.+|+.+.+++ +|
T Consensus 18 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~f 94 (285)
T 1zq9_A 18 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FF 94 (285)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CC
T ss_pred HHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hh
Confidence 3344444456788999999999999999998764 9999999964 356888999887765 69
Q ss_pred hHHHHH------------HhhccccHHHHH----HHH--HHhccCCcEEE
Q 025148 164 DFEFSN------------VFDHALYPDKFV----MEI--ERTLKPGGVCV 195 (257)
Q Consensus 164 D~V~~~------------~l~h~~~~~~~l----~~~--~r~LkpgG~l~ 195 (257)
|+|++| +++|..+...++ +|+ +++|||||.++
T Consensus 95 D~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 95 DTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp SEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 998774 344444332211 333 46999999763
No 226
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.01 E-value=7.8e-11 Score=97.94 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=68.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC-C------------
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ-P------------ 157 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~-~------------ 157 (257)
.++.+|||||||+|..+..+++. + ..+|+++|+++. .+.+..+|..+. +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 35789999999999999999986 3 569999999965 256677776542 1
Q ss_pred --CCC--CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 158 --FDD--ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 158 --~~~--~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++ ++||+|+++. ...+...+++++.++|||||++++...
T Consensus 139 ~~f~~~~~~fD~I~~~~--~~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDA--DKENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TTTCCSTTCEEEEEECS--CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ccccCCCCCcCEEEEeC--CHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 233 7899998751 123455889999999999999999753
No 227
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.01 E-value=2.7e-10 Score=103.63 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=73.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CC-CcEEEecCCCC---------------CCcEEEecCCCCC--CCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GV-SDSVGIDLVPY---------------PPLVIEGDFHRQP--FDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~ 168 (257)
..++.+|||+|||+|..+..+++. +. ++|+|+|+++. ++.+.++|..+.+ +++++||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 567889999999999999999885 33 69999999965 4567788888775 55578999874
Q ss_pred H-------HhhccccH----------------HHHHHHHHHhccCCcEEEEEecc
Q 025148 169 N-------VFDHALYP----------------DKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 169 ~-------~l~h~~~~----------------~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+ ++.+.++. .++++++.+.|||||.++++++.
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 2 44433332 56899999999999999998864
No 228
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=99.01 E-value=4.2e-10 Score=98.77 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcC-C-----CcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVG-V-----SDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~-~-----~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
.++.+|||+|||+|.++..+++.. . .+++|+|+++. .+.+.++|.... ..+++||+|++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~ 207 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVIS 207 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEE
Confidence 456799999999999998887642 1 58999999976 357788887663 34578999999
Q ss_pred H-HhhccccH------------------HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEE
Q 025148 169 N-VFDHALYP------------------DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVR 229 (257)
Q Consensus 169 ~-~l~h~~~~------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~ 229 (257)
| .+.++... ..+++++.+.|||||++++.+|..- +... ....+++++.+.++..
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~----~~~~---~~~~ir~~l~~~~~~~ 280 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAM----FGTS---DFAKVDKFIKKNGHIE 280 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGG----GGST---THHHHHHHHHHHEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchh----cCCc---hHHHHHHHHHhCCeEE
Confidence 7 54444322 2578999999999999999997541 1110 3567777777776643
No 229
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.00 E-value=1.1e-10 Score=99.80 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------------CCcEEEecCCCC-CCCCCchhHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------------PPLVIEGDFHRQ-PFDDETFDFE 166 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V 166 (257)
..++.+|||||||+|..+..+++. +..+|+++|+++. ++.++.+|+.+. +..+++||+|
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 346689999999999999999886 4579999999854 235667776543 2235789999
Q ss_pred HHHHhhccc---c--HHHHHHHHHHhccCCcEEEEEec
Q 025148 167 FSNVFDHAL---Y--PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~~---~--~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++...+.. . ..+++++++++|||||++++...
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 886433322 1 16899999999999999999864
No 230
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.99 E-value=8.1e-11 Score=97.60 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCC----CCCCC--CchhH
Q 025148 110 NESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHR----QPFDD--ETFDF 165 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~----~~~~~--~~fD~ 165 (257)
++.+|||||||+|..+..+++. + .++|+++|+++. .+.+..+|..+ ++.++ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 5679999999999999999985 3 569999999975 25667777543 22333 78999
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+++.- ..+...+++++.++|||||++++...
T Consensus 152 V~~d~~--~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 152 IFIDAD--KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEECSC--GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EEECCC--HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 987521 24567899999999999999999753
No 231
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.99 E-value=5.4e-10 Score=92.51 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=67.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhhc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFDH 173 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~h 173 (257)
....+|||||||.|.++..+. +..+++|+|+++. +..+..+|....+.++ ++|+|++. +++|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHH
Confidence 567899999999999998877 6679999999976 3456778888777665 89999885 7887
Q ss_pred cccHH-HHHHHHHHhccCCcEEEEEec
Q 025148 174 ALYPD-KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 174 ~~~~~-~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+++.+ ...-++...|+++|++ ++.|
T Consensus 181 LE~q~~~~~~~ll~aL~~~~vv-VsfP 206 (253)
T 3frh_A 181 LEREQAGSAMALLQSLNTPRMA-VSFP 206 (253)
T ss_dssp HHHHSTTHHHHHHHHCBCSEEE-EEEE
T ss_pred hhhhchhhHHHHHHHhcCCCEE-EEcC
Confidence 76332 2334888899998654 5555
No 232
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.97 E-value=8.2e-11 Score=105.24 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=74.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCC----CCCchhHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPF----DDETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~----~~~~fD~V~ 167 (257)
.+++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.++++|+.+... ++++||+|+
T Consensus 215 ~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 215 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 3478899999999999999999876669999999965 35677888766421 256899988
Q ss_pred HH----------HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SN----------VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~----------~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++ +.++..+..+++.++.+.|||||.+++.++.
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 74 3344456778999999999999999988764
No 233
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.96 E-value=8.9e-11 Score=96.63 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC--CCCC----Cchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ--PFDD----ETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~--~~~~----~~fD 164 (257)
.++.+|||+|||+|..+..+++. + ..+|+++|+++. .+.++.+|+.+. .+.+ ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 46789999999999999999985 3 569999999975 356677776543 1211 6799
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|+++.- ..+...+++++.+.|||||++++..
T Consensus 148 ~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 148 VAVVDAD--KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEECSC--STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC--HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9988521 2345688999999999999999864
No 234
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.96 E-value=2.6e-10 Score=104.30 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCC-CCCchhHHHHH--
Q 025148 110 NESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPF-DDETFDFEFSN-- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~-- 169 (257)
++.+|||+|||+|..+..+++. +.+.|+|+|+++. ++.++++|..+++. .+++||.|+++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 7899999999999999999985 3469999999966 45677888877653 45789998763
Q ss_pred -----Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -----VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -----~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+.++ ..++++++.++|||||+++++++.
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 3332221 246789999999999999999864
No 235
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.96 E-value=1.1e-10 Score=99.74 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------------------CCcEEEecCCCC-CCCCCc
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------------------PPLVIEGDFHRQ-PFDDET 162 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------------------~~~~~~~d~~~~-~~~~~~ 162 (257)
..+.+|||||||+|..+..+++.+..+|+++|+++. ++.++.+|..+. +. +++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 456899999999999999998876679999999854 234555665432 22 568
Q ss_pred hhHHHHHHhhcccc-----HHHHHHHHHHhccCCcEEEEEec
Q 025148 163 FDFEFSNVFDHALY-----PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 163 fD~V~~~~l~h~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
||+|+++...+... ..++++++.++|||||++++...
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 99999875433321 26789999999999999999753
No 236
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.95 E-value=2.9e-10 Score=96.85 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=80.8
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
..++|.+|||+|||+|.++..++..+.++|+++|+|+. .+.++++|..+++. .+.||.|+++.
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~ 200 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY 200 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECC
Confidence 35789999999999999999999888779999999976 35778889888753 56799987762
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
. ....+++..+.+.||+||++.+..-..... ... ...+.+.+...+.|+.
T Consensus 201 p---~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-~~~----~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 201 V---VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-MPR----EPFETFKRITKEYGYD 250 (278)
T ss_dssp C---SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-TTT----TTHHHHHHHHHHTTCE
T ss_pred C---CcHHHHHHHHHHHcCCCCEEEEEeeecccc-cch----hHHHHHHHHHHHcCCc
Confidence 2 223467888889999999987764221110 010 1234556666666653
No 237
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.95 E-value=1.3e-10 Score=96.66 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=68.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-CCcEEEecCCCC----------------CCcEEEecCCCC-C-C-----CCCch
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-VSDSVGIDLVPY----------------PPLVIEGDFHRQ-P-F-----DDETF 163 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~----------------~~~~~~~d~~~~-~-~-----~~~~f 163 (257)
.++.+|||||||+|..+..+++. + .++|+++|+++. .+.++.+|..+. + + ++++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 35679999999999999999885 3 579999999965 256777777653 2 2 25789
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
|+|+++.- ..+...+++++.+.|||||++++..
T Consensus 149 D~I~~d~~--~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDAD--KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCc--hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99987521 2345688999999999999999875
No 238
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.93 E-value=1.5e-10 Score=105.31 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=71.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC--------------CCcEEEecCCCCC-CCCCchhHHHHH-
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY--------------PPLVIEGDFHRQP-FDDETFDFEFSN- 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~--------------~~~~~~~d~~~~~-~~~~~fD~V~~~- 169 (257)
..++.+|||+|||+|..+..+++. +.++|+|+|+++. .+.++++|..+++ ..+++||+|+++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 467899999999999999999975 3369999999976 2566777776654 346789998742
Q ss_pred ------Hhhcccc----------------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ------VFDHALY----------------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ------~l~h~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+-++ ..++++++.++|||||+++.+++.
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3332222 267889999999999999998864
No 239
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.92 E-value=1.6e-09 Score=90.70 Aligned_cols=124 Identities=13% Similarity=0.060 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----------------CCcEEEecCCCC---CCC---CCchhHH
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----------------PPLVIEGDFHRQ---PFD---DETFDFE 166 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----------------~~~~~~~d~~~~---~~~---~~~fD~V 166 (257)
++.+|||+|||+|.++..+++. +..+|+|+|+|+. .+.++++|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 5679999999999999888875 3469999999965 267888887652 444 3689999
Q ss_pred HHH-Hhhccc--------------cH-HHHHHHHHHhccCCcEEEEEeccC--------CCcCcCC-CCCcCChhHHHHh
Q 025148 167 FSN-VFDHAL--------------YP-DKFVMEIERTLKPGGVCVLHVALS--------KRADKYS-ANDLFSVKPLVKL 221 (257)
Q Consensus 167 ~~~-~l~h~~--------------~~-~~~l~~~~r~LkpgG~l~i~~~~~--------~~~~~y~-~~~~~~~~~~~~~ 221 (257)
+++ .+.+.. .+ ..++.+++++|||||.+.+..... ...+.+. .........+.++
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 224 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE 224 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHH
Confidence 987 222211 11 234567777777777665432100 0000000 0011234678889
Q ss_pred cccCCcEEEEEe
Q 025148 222 FKRSEMVRVRKV 233 (257)
Q Consensus 222 f~~~~~~~~~~~ 233 (257)
+++.||..+...
T Consensus 225 l~~~Gf~~v~~~ 236 (254)
T 2h00_A 225 LRIQGVPKVTYT 236 (254)
T ss_dssp HHHTTCSEEEEE
T ss_pred HHHcCCCceEEE
Confidence 999998765543
No 240
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.92 E-value=2e-10 Score=109.78 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC-CCCCCchhHHHHH--
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ-PFDDETFDFEFSN-- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~-~~~~~~fD~V~~~-- 169 (257)
++.+|||+|||+|.++..++..+..+|+++|+|+. ++.++++|+.+. +..+++||+|+++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 67899999999999999999877667999999965 256788887763 4446789999875
Q ss_pred H----------hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 V----------FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ~----------l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
. +++..+..++++++.++|||||++++++..
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2 234456778899999999999999988753
No 241
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.92 E-value=2e-09 Score=90.40 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=69.7
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchhHH
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V 166 (257)
++..+..++++.+|||+|||+|.++..+++. +...+.|+|+... ++.....++....+++++||+|
T Consensus 65 ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlV 144 (277)
T 3evf_A 65 WFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTL 144 (277)
T ss_dssp HHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEE
T ss_pred HHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEE
Confidence 3334556788899999999999999998875 5556777776622 1223455555556778899999
Q ss_pred HHHHhhc----cccHH---HHHHHHHHhccCC-cEEEEEec
Q 025148 167 FSNVFDH----ALYPD---KFVMEIERTLKPG-GVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h----~~~~~---~~l~~~~r~Lkpg-G~l~i~~~ 199 (257)
+|+...+ ..|.. .+++.+.++|||| |.+++-+.
T Consensus 145 lsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 145 LCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred EecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 9974333 11221 2468889999999 99999774
No 242
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.91 E-value=7.3e-10 Score=98.95 Aligned_cols=93 Identities=15% Similarity=0.036 Sum_probs=69.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCC-CCCCCchhHHHHH--
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQ-PFDDETFDFEFSN-- 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~-~~~~~~fD~V~~~-- 169 (257)
..+++.+|||+|||+|.++..+++.+. +|+|+|+|+. ...+.++|+.+. +...+.||+|+++
T Consensus 211 ~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 211 MVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred HhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 345689999999999999999999765 5999999976 234667777654 1113349999875
Q ss_pred H--------hhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 V--------FDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ~--------l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
. .....+..++++.+.++|||||.+++.++.
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2 122335567889999999999999977653
No 243
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.91 E-value=3.3e-10 Score=102.86 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=70.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCC-CCCCchhHHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQP-FDDETFDFEFSN 169 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~ 169 (257)
..++.+|||+|||+|..+..+++. +.+.|+++|+++. ++.+.++|..+++ ..+++||.|+++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 467899999999999999999875 3469999999976 3556677776653 235789998753
Q ss_pred -------Hhhccc----------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 -------VFDHAL----------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 -------~l~h~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++.+-+ ...++++++.+.|||||.++.+++.
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 222211 1236789999999999999998874
No 244
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.91 E-value=5.1e-10 Score=99.76 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=69.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC-C-C--CCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ-P-F--DDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~-~-~--~~~~fD~V~ 167 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.++++|+.+. + . ..++||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 567899999999999999999876568999999986 245778887653 2 1 245899998
Q ss_pred HH--Hh----hccc----cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SN--VF----DHAL----YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~--~l----~h~~----~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++ .+ .+.. +..++++++.+.|+|||++++++..
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 74 21 2333 3445778889999999999998753
No 245
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.86 E-value=1.9e-10 Score=102.36 Aligned_cols=90 Identities=18% Similarity=0.111 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCC----CCCchhHHHHH-
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPF----DDETFDFEFSN- 169 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~----~~~~fD~V~~~- 169 (257)
++.+|||+|||+|.++..+++. ..+|+|+|+|+. ++.++++|+.+... .+++||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 6789999999999999999987 559999999965 25678888776422 25689999874
Q ss_pred ---------HhhccccHHHHHHHHHHhccCCcEEEEEecc
Q 025148 170 ---------VFDHALYPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 170 ---------~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+..+.....+++.++.++|+|||.++++++.
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2233345677899999999999999998753
No 246
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.86 E-value=7.8e-10 Score=96.81 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=68.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------------CCcEEEecCCCCCCCCCchhHHHHHHh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------------PPLVIEGDFHRQPFDDETFDFEFSNVF 171 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~l 171 (257)
+.++.+|||+|||+|.++.. ++ +..+|+|+|+|+. ++.++++|+.+.. ++||+|+++.-
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP 267 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred cCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence 45788999999999999999 77 6679999999964 3678888888765 78999988622
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+ ..++++++.+.|+|||.+++...
T Consensus 268 ~~---~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 268 KF---AHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp TT---GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred Hh---HHHHHHHHHHHcCCCCEEEEEEe
Confidence 11 22788999999999999998764
No 247
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.82 E-value=2.3e-09 Score=89.64 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=61.8
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCC-CchhHHHHH---
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDD-ETFDFEFSN--- 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~-~~fD~V~~~--- 169 (257)
.+.++.+|||||||+|.++..+++.+ .+|+|+|+++. ++.++++|+.++++++ ..|+ |++|
T Consensus 27 ~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~-vv~nlPy 104 (244)
T 1qam_A 27 RLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK-IFGNIPY 104 (244)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE-EEEECCG
T ss_pred CCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeE-EEEeCCc
Confidence 34678899999999999999999887 59999999964 4678899999988774 4554 3332
Q ss_pred ---------HhhccccHHHHH----HHHHHhccCCcEEEE
Q 025148 170 ---------VFDHALYPDKFV----MEIERTLKPGGVCVL 196 (257)
Q Consensus 170 ---------~l~h~~~~~~~l----~~~~r~LkpgG~l~i 196 (257)
.++|...+..++ +.+.|+++++|.+.+
T Consensus 105 ~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v 144 (244)
T 1qam_A 105 NISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLAL 144 (244)
T ss_dssp GGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHH
T ss_pred ccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhH
Confidence 333433333333 336677777765443
No 248
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.81 E-value=7.3e-10 Score=99.08 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=71.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCCCC----CCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQPF----DDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~~----~~~~fD~V~ 167 (257)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+. ++.++++|+.+... .+++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 467899999999999999999976669999999964 23577777765421 146899998
Q ss_pred HH--H--------hhccccHHHHHHHHHHhccCCcEEEEEec
Q 025148 168 SN--V--------FDHALYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 168 ~~--~--------l~h~~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
++ . .++.....+++.++.+.|+|||++++++.
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 85 1 22234567889999999999999999875
No 249
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.79 E-value=1.2e-08 Score=92.14 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=65.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCC----CCCCCCchhHHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHR----QPFDDETFDFEFS 168 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~----~~~~~~~fD~V~~ 168 (257)
..++.+|||+|||+|.++..+++. ..+|+|+|+|+. ++.++++|+.+ +++++++||+|++
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~ 362 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEE
Confidence 466789999999999999999987 459999999965 46788999887 3456778999988
Q ss_pred H-HhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 N-VFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~-~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+ -.... .++++.+.+ ++|+++++++.
T Consensus 363 dPPr~g~---~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 363 DPARAGA---AGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred CCCCccH---HHHHHHHHh-cCCCeEEEEEC
Confidence 6 11111 145555543 78999988875
No 250
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.78 E-value=1.1e-09 Score=91.70 Aligned_cols=87 Identities=9% Similarity=0.023 Sum_probs=68.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 109 SNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
....+|||||||+|.++..+... +..+|+++|+++. ...+...|...-+ +.+.+|+++++ +++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLP 209 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHH
Confidence 55779999999999999998876 7789999999976 3456666766555 45679999886 899
Q ss_pred ccccHHH-HHHHHHHhccCCcEEEE
Q 025148 173 HALYPDK-FVMEIERTLKPGGVCVL 196 (257)
Q Consensus 173 h~~~~~~-~l~~~~r~LkpgG~l~i 196 (257)
|+++.++ ..-++...|+++|+++-
T Consensus 210 ~Le~q~kg~g~~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 210 CLETQQRGSGWEVIDIVNSPNIVVT 234 (281)
T ss_dssp HHHHHSTTHHHHHHHHSSCSEEEEE
T ss_pred HhhhhhhHHHHHHHHHhCCCCEEEe
Confidence 8875432 33389999999987664
No 251
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.77 E-value=4e-09 Score=90.55 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCCCchh
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDDETFD 164 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~~~fD 164 (257)
....++....+.++++|||||||+|.++..+++.+ .+|+|+|+++. ++.++++|+.+.++++.+||
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD 116 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFN 116 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCS
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCcc
Confidence 34444444456778999999999999999999875 49999999976 56789999999998888899
Q ss_pred HHHHHHh
Q 025148 165 FEFSNVF 171 (257)
Q Consensus 165 ~V~~~~l 171 (257)
.|++|.-
T Consensus 117 ~Iv~NlP 123 (295)
T 3gru_A 117 KVVANLP 123 (295)
T ss_dssp EEEEECC
T ss_pred EEEEeCc
Confidence 9988733
No 252
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.77 E-value=4.1e-09 Score=90.72 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=49.2
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSN 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 169 (257)
...+.++.+|||+|||+|.++..+++.+ .+|+|+|+++. ++.++.+|+.+.+++ +||+|++|
T Consensus 37 ~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n 113 (299)
T 2h1r_A 37 AAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTAN 113 (299)
T ss_dssp HHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEE
T ss_pred hcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEc
Confidence 3345678899999999999999999875 49999999964 456788888877654 79999887
Q ss_pred Hhhcc
Q 025148 170 VFDHA 174 (257)
Q Consensus 170 ~l~h~ 174 (257)
.-.++
T Consensus 114 ~py~~ 118 (299)
T 2h1r_A 114 IPYKI 118 (299)
T ss_dssp CCGGG
T ss_pred CCccc
Confidence 33333
No 253
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.70 E-value=7.1e-09 Score=94.05 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=69.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--------------CCCcEEEecCCCC-----------------CCcEEEecCCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRV--------------GVSDSVGIDLVPY-----------------PPLVIEGDFHRQP 157 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--------------~~~~v~gvD~s~~-----------------~~~~~~~d~~~~~ 157 (257)
.++.+|||.|||+|.++..+++. ...+++|+|+++. ...+.++|....+
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 55679999999999999887753 2358999999965 2467888887766
Q ss_pred CCCCchhHHHHH-Hhhcccc-----------------HHHHHHHHHHhccCCcEEEEEecc
Q 025148 158 FDDETFDFEFSN-VFDHALY-----------------PDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 158 ~~~~~fD~V~~~-~l~h~~~-----------------~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
.. ++||+|++| -+.+... ...+++.+.+.|||||++++.+|.
T Consensus 250 ~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 250 PS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp CS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 54 379999997 3332211 136889999999999999999874
No 254
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.68 E-value=2e-08 Score=84.48 Aligned_cols=99 Identities=9% Similarity=0.038 Sum_probs=67.3
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC----C---------CcEEEecCCCCCCCCCchhHH
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY----P---------PLVIEGDFHRQPFDDETFDFE 166 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~----~---------~~~~~~d~~~~~~~~~~fD~V 166 (257)
++..+..++++.+|||+|||+|.++..+++. +...|+|+|+... + +.....+.....++.+.+|+|
T Consensus 81 ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvV 160 (282)
T 3gcz_A 81 WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTL 160 (282)
T ss_dssp HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEE
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEE
Confidence 3334557788899999999999999998864 6668999999743 1 112222222234567889999
Q ss_pred HHHHhhcc-----ccHH--HHHHHHHHhccCC--cEEEEEec
Q 025148 167 FSNVFDHA-----LYPD--KFVMEIERTLKPG--GVCVLHVA 199 (257)
Q Consensus 167 ~~~~l~h~-----~~~~--~~l~~~~r~Lkpg--G~l~i~~~ 199 (257)
+|+.-.+. +... .+++-+.++|||| |.+++-+.
T Consensus 161 LSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 161 LCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred EecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 99633221 1111 2467778999999 99999874
No 255
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.66 E-value=4.2e-08 Score=88.45 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=64.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------------CCcEEEecCCCCCCCCCchhHHHHH-Hhh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------------PPLVIEGDFHRQPFDDETFDFEFSN-VFD 172 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~l~ 172 (257)
+.++.+|||+|||+|.++..+++.+ .+|+|+|+|+. .+.+..+|+.+... + +||+|+++ -..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCcc
Confidence 4677899999999999999999875 49999999966 15788899888643 2 79999885 211
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ....+++.+. .|+|||+++++.
T Consensus 365 g--~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 365 G--LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp C--SCHHHHHHHH-HHCCSEEEEEES
T ss_pred c--hHHHHHHHHH-hcCCCcEEEEEC
Confidence 1 1224555554 599999999976
No 256
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=98.62 E-value=2.2e-08 Score=83.11 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=65.7
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHc-C----CCcEEEec--CCCC-----CCcEEE---e-cCCCCCCCCCchhH
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRV-G----VSDSVGID--LVPY-----PPLVIE---G-DFHRQPFDDETFDF 165 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~----~~~v~gvD--~s~~-----~~~~~~---~-d~~~~~~~~~~fD~ 165 (257)
+..+.+++++++|||+||++|.++..+++. + .+.++|+| +.|. .+.++. + |+.+++ ...+|+
T Consensus 65 IdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~Dv 142 (269)
T 2px2_A 65 LVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDT 142 (269)
T ss_dssp HHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSE
T ss_pred HHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCE
Confidence 333557899999999999999999999886 1 23567777 3333 123333 5 887643 557999
Q ss_pred HHHHH--------hhccccHHHHHHHHHHhccCCc-EEEEEec
Q 025148 166 EFSNV--------FDHALYPDKFVMEIERTLKPGG-VCVLHVA 199 (257)
Q Consensus 166 V~~~~--------l~h~~~~~~~l~~~~r~LkpgG-~l~i~~~ 199 (257)
|+|+. .+|..... ++.-+.++|+||| .+++-+.
T Consensus 143 VLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 143 LLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp EEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEES
T ss_pred EEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEEC
Confidence 98862 33332222 6667779999999 8888764
No 257
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.61 E-value=6.8e-08 Score=86.00 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=72.0
Q ss_pred HHHhhcCCCCCeEEEECCCCCHHHHHHHHcCC---------------------------------------CcEEEecCC
Q 025148 102 LKRKKLLSNESKALCIGARVGQEVEALKRVGV---------------------------------------SDSVGIDLV 142 (257)
Q Consensus 102 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD~s 142 (257)
++......++.++||.|||+|.++..++..+. .+|+|+|++
T Consensus 187 ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid 266 (385)
T 3ldu_A 187 LIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID 266 (385)
T ss_dssp HHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred HHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence 33344456788999999999999988876421 479999999
Q ss_pred CC----------------CCcEEEecCCCCCCCCCchhHHHHH--Hhhccc---cHHHHHHHHHHhccC--CcEEEEEec
Q 025148 143 PY----------------PPLVIEGDFHRQPFDDETFDFEFSN--VFDHAL---YPDKFVMEIERTLKP--GGVCVLHVA 199 (257)
Q Consensus 143 ~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~~---~~~~~l~~~~r~Lkp--gG~l~i~~~ 199 (257)
+. .+.+.++|+.+++.+ ++||+|++| ..+.+. +..++.+++.+.||+ ||.+.+.++
T Consensus 267 ~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 267 EESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 76 357889999988765 489999997 333333 344566777778877 888888875
No 258
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.59 E-value=9.7e-08 Score=85.19 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=71.6
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCC---------------------------------------CcEEEecC
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRVGV---------------------------------------SDSVGIDL 141 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD~ 141 (257)
.++......++..+||.+||+|.++..++..+. .+|+|+|+
T Consensus 192 ~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDi 271 (393)
T 3k0b_A 192 ALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDI 271 (393)
T ss_dssp HHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEES
T ss_pred HHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEEC
Confidence 333344456788999999999999988776421 35999999
Q ss_pred CCC----------------CCcEEEecCCCCCCCCCchhHHHHH--Hhhccc---cHHHHHHHHHHhccC--CcEEEEEe
Q 025148 142 VPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--VFDHAL---YPDKFVMEIERTLKP--GGVCVLHV 198 (257)
Q Consensus 142 s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~~---~~~~~l~~~~r~Lkp--gG~l~i~~ 198 (257)
++. .+.+.++|+.+++.++ +||+|++| .-+.+. +..++.+++.+.||+ ||.+++.+
T Consensus 272 d~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 272 DARLIEIAKQNAVEAGLGDLITFRQLQVADFQTED-EYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp CHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCC-CSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCC-CCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 965 3678999999987654 89999998 333332 334455666677766 99988887
Q ss_pred c
Q 025148 199 A 199 (257)
Q Consensus 199 ~ 199 (257)
+
T Consensus 351 ~ 351 (393)
T 3k0b_A 351 S 351 (393)
T ss_dssp C
T ss_pred C
Confidence 5
No 259
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.58 E-value=3.4e-08 Score=83.72 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=58.4
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------CCcEEEecCCCCCCCCC-chhH
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------PPLVIEGDFHRQPFDDE-TFDF 165 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~~~~~~~d~~~~~~~~~-~fD~ 165 (257)
...++....+.++ +|||||||+|.++..+++.+ .+|+|+|+++. ++.++++|+.++++++. .+|.
T Consensus 36 ~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 36 LRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp HHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEE
T ss_pred HHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccE
Confidence 3344444456677 99999999999999999987 59999999976 46789999999887653 6888
Q ss_pred HHHHHhhccc
Q 025148 166 EFSNVFDHAL 175 (257)
Q Consensus 166 V~~~~l~h~~ 175 (257)
|++|.-.++.
T Consensus 114 iv~NlPy~is 123 (271)
T 3fut_A 114 LVANLPYHIA 123 (271)
T ss_dssp EEEEECSSCC
T ss_pred EEecCccccc
Confidence 8888444443
No 260
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.56 E-value=1.5e-07 Score=83.60 Aligned_cols=99 Identities=12% Similarity=-0.007 Sum_probs=73.1
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCC---------------------------------------CcEEEec
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGV---------------------------------------SDSVGID 140 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD 140 (257)
..++......++..+||.+||+|.++..++..+. .+|+|+|
T Consensus 184 aall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvD 263 (384)
T 3ldg_A 184 AAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFD 263 (384)
T ss_dssp HHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred HHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 3344444456788999999999999988776421 3599999
Q ss_pred CCCC----------------CCcEEEecCCCCCCCCCchhHHHHH--Hhhccc---cHHHHHHHHHHhccC--CcEEEEE
Q 025148 141 LVPY----------------PPLVIEGDFHRQPFDDETFDFEFSN--VFDHAL---YPDKFVMEIERTLKP--GGVCVLH 197 (257)
Q Consensus 141 ~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~l~h~~---~~~~~l~~~~r~Lkp--gG~l~i~ 197 (257)
+++. .+.+.++|+.+++.++ +||+|++| .-+.+. +..++.+++.+.||+ ||.+.+.
T Consensus 264 id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 342 (384)
T 3ldg_A 264 FDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFIL 342 (384)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 9966 3678899999987654 79999997 333332 344566777777776 9999998
Q ss_pred ec
Q 025148 198 VA 199 (257)
Q Consensus 198 ~~ 199 (257)
++
T Consensus 343 t~ 344 (384)
T 3ldg_A 343 TN 344 (384)
T ss_dssp ES
T ss_pred EC
Confidence 85
No 261
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=98.55 E-value=8.9e-08 Score=83.97 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=66.5
Q ss_pred hcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHHHHHHhhccccH
Q 025148 106 KLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFEFSNVFDHALYP 177 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~ 177 (257)
..+++|.++||+||++|.++..+.+++. .|+|||+.+- .+.++++|......+.+.||+|+|++.. +|
T Consensus 207 ~~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p 282 (375)
T 4auk_A 207 ERLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KP 282 (375)
T ss_dssp HHSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CH
T ss_pred ccCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC---Ch
Confidence 4468899999999999999999999874 9999998864 5678899998887777889999997543 46
Q ss_pred HHHHHHHHHhccCC
Q 025148 178 DKFVMEIERTLKPG 191 (257)
Q Consensus 178 ~~~l~~~~r~Lkpg 191 (257)
.+.+.-+.++|..|
T Consensus 283 ~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 283 AKVAALMAQWLVNG 296 (375)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHhcc
Confidence 66666666666655
No 262
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.54 E-value=3.4e-08 Score=83.04 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=54.9
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCCCCCC----
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQPFDD---- 160 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~~~~~---- 160 (257)
....++....+.++.+|||||||+|.++..+++.+ .+|+|+|+++. ++.++++|+.++++++
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 95 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTD 95 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCS
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccC
Confidence 33444444556778999999999999999999876 59999999965 4678999999987753
Q ss_pred CchhHHHHH
Q 025148 161 ETFDFEFSN 169 (257)
Q Consensus 161 ~~fD~V~~~ 169 (257)
++|| |++|
T Consensus 96 ~~~~-vv~N 103 (255)
T 3tqs_A 96 KPLR-VVGN 103 (255)
T ss_dssp SCEE-EEEE
T ss_pred CCeE-EEec
Confidence 4688 6555
No 263
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.54 E-value=2.2e-07 Score=82.16 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=63.9
Q ss_pred CCeEEEECCCCCHHHHHHH--------Hc--------CCCcEEEecCCCCC---------------------------Cc
Q 025148 111 ESKALCIGARVGQEVEALK--------RV--------GVSDSVGIDLVPYP---------------------------PL 147 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~--------~~--------~~~~v~gvD~s~~~---------------------------~~ 147 (257)
..+|+|+|||+|..+..+. +. +..+|+..|+-... ..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4789999999999987762 11 34567777765431 01
Q ss_pred EEE---ecCCCCCCCCCchhHHHHH-Hhhccc--------------------------------------cHHHHHHHHH
Q 025148 148 VIE---GDFHRQPFDDETFDFEFSN-VFDHAL--------------------------------------YPDKFVMEIE 185 (257)
Q Consensus 148 ~~~---~d~~~~~~~~~~fD~V~~~-~l~h~~--------------------------------------~~~~~l~~~~ 185 (257)
++. +.+....+|+++||+|+|+ ++|++. |...+++..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2233346889999999996 888876 2334678889
Q ss_pred HhccCCcEEEEEecc
Q 025148 186 RTLKPGGVCVLHVAL 200 (257)
Q Consensus 186 r~LkpgG~l~i~~~~ 200 (257)
+.|+|||.+++++..
T Consensus 213 ~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHEEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEec
Confidence 999999999999753
No 264
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.52 E-value=7.3e-08 Score=85.35 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=80.2
Q ss_pred CCeEEEECCCCCHHHHHHHHc------------------CCCcEEEecCCCC------------------------CCcE
Q 025148 111 ESKALCIGARVGQEVEALKRV------------------GVSDSVGIDLVPY------------------------PPLV 148 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~------------------~~~~v~gvD~s~~------------------------~~~~ 148 (257)
..+|+|+||++|..+..+.+. +..+|+..|+-.. +..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999998776543 2346677776522 1244
Q ss_pred EEecCCC---CCCCCCchhHHHHH-HhhccccHHH---------------------------------------HHHHHH
Q 025148 149 IEGDFHR---QPFDDETFDFEFSN-VFDHALYPDK---------------------------------------FVMEIE 185 (257)
Q Consensus 149 ~~~d~~~---~~~~~~~fD~V~~~-~l~h~~~~~~---------------------------------------~l~~~~ 185 (257)
+.+.... ..|+++++|+|+|+ ++|++.+..+ +|+...
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544433 47899999999996 8888764321 255558
Q ss_pred HhccCCcEEEEEeccCCCc--C--------------------------cCC-CCCcCChhHHHHhcccCCc
Q 025148 186 RTLKPGGVCVLHVALSKRA--D--------------------------KYS-ANDLFSVKPLVKLFKRSEM 227 (257)
Q Consensus 186 r~LkpgG~l~i~~~~~~~~--~--------------------------~y~-~~~~~~~~~~~~~f~~~~~ 227 (257)
+.|+|||.+++++...... . .+. ..++.+.+++..++++.|.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~ 283 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGS 283 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCS
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCC
Confidence 9999999999998643322 1 021 2245589999999998753
No 265
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.52 E-value=1.5e-08 Score=88.82 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=66.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------------CCcEEEecCCCCCC----CCC
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------------PPLVIEGDFHRQPF----DDE 161 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------------~~~~~~~d~~~~~~----~~~ 161 (257)
..+.+||+||||+|..+..+++.+..+|+++|+++. ++.++.+|..+.-- .++
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~ 266 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 266 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCC
Confidence 356899999999999999998876678999999965 13445555544321 357
Q ss_pred chhHHHHHHhh-cc------ccHHHHHHHH----HHhccCCcEEEEEec
Q 025148 162 TFDFEFSNVFD-HA------LYPDKFVMEI----ERTLKPGGVCVLHVA 199 (257)
Q Consensus 162 ~fD~V~~~~l~-h~------~~~~~~l~~~----~r~LkpgG~l~i~~~ 199 (257)
+||+|+.+... .. ....++++.+ .++|+|||++++...
T Consensus 267 ~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~ 315 (364)
T 2qfm_A 267 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 315 (364)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcC
Confidence 89999887433 11 1234666666 899999999999864
No 266
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.51 E-value=1.5e-08 Score=95.04 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=61.9
Q ss_pred CCeEEEECCCCCHHHHHHHH---cCC--CcEEEecCCCC---------------CCcEEEecCCCCCCCCCchhHHHHHH
Q 025148 111 ESKALCIGARVGQEVEALKR---VGV--SDSVGIDLVPY---------------PPLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~---~~~--~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
+..|||||||+|.++....+ .+. .+|++||-|+. .+.++++|++++..| +++|+|+|..
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEw 436 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSEL 436 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEc
Confidence 35799999999999554433 332 26899999865 578999999999887 4699999973
Q ss_pred hhcccc---HHHHHHHHHHhccCCcEEE
Q 025148 171 FDHALY---PDKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 171 l~h~~~---~~~~l~~~~r~LkpgG~l~ 195 (257)
+..... -.+.+....|.|||||+++
T Consensus 437 MG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 437 LGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred CcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 333221 1246667779999999875
No 267
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=98.50 E-value=3e-07 Score=77.87 Aligned_cols=95 Identities=14% Similarity=0.018 Sum_probs=65.6
Q ss_pred hhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCCC-------------CcEEEecCCCCCCCCCchhHHHHHH
Q 025148 105 KKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPYP-------------PLVIEGDFHRQPFDDETFDFEFSNV 170 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~-------------~~~~~~d~~~~~~~~~~fD~V~~~~ 170 (257)
+.++.++.+|||+||++|.++..+++. +...|+|+|+.... +.....+..-..+..+.+|+|+|+.
T Consensus 76 k~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~ 155 (300)
T 3eld_A 76 RGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDI 155 (300)
T ss_dssp HTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred hCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecC
Confidence 366788999999999999999999985 55688999987431 1112222222245567899999863
Q ss_pred hhccc----cH---HHHHHHHHHhccCC-cEEEEEec
Q 025148 171 FDHAL----YP---DKFVMEIERTLKPG-GVCVLHVA 199 (257)
Q Consensus 171 l~h~~----~~---~~~l~~~~r~Lkpg-G~l~i~~~ 199 (257)
..+.. |. ...+.-+.++|+|| |.|++-+.
T Consensus 156 APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 156 GESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 33311 11 23467778999999 99999874
No 268
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.49 E-value=1.1e-07 Score=72.27 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=47.7
Q ss_pred CCCCeEEEECCCCC-HHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCC-CchhHHHH
Q 025148 109 SNESKALCIGARVG-QEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDD-ETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~-~~fD~V~~ 168 (257)
..+++|||||||+| ..+..|++....+|+++|+++..+.+++.|+.+....- +.||+|++
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYs 95 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYS 95 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccceEEccCCCCcccccCCcCEEEE
Confidence 45679999999999 69999997433599999999998889999998743321 36888866
No 269
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.48 E-value=5.8e-08 Score=85.90 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=60.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------------CCcEEEecCCCCC--CCC------------
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------------PPLVIEGDFHRQP--FDD------------ 160 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------------~~~~~~~d~~~~~--~~~------------ 160 (257)
.+.+|||+|||+|.++..+++. ..+|+|+|+|+. ++.++.+|+.+.. +.+
T Consensus 213 ~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 213 SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 3678999999999999999884 359999999975 3567777776541 121
Q ss_pred --CchhHHHHHHhhccccHH--HHHHHHHHhccCCcEEEEEecc
Q 025148 161 --ETFDFEFSNVFDHALYPD--KFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 161 --~~fD~V~~~~l~h~~~~~--~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++||+|+.+ |. .+..++.+.|+++|.++...++
T Consensus 292 ~~~~fD~Vv~d-------PPr~g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 292 KSYQCETIFVD-------PPRSGLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp GGCCEEEEEEC-------CCTTCCCHHHHHHHTTSSEEEEEESC
T ss_pred ccCCCCEEEEC-------cCccccHHHHHHHHhCCCEEEEEECC
Confidence 379998764 11 1345677788899988877653
No 270
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.45 E-value=2.9e-08 Score=93.28 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=64.2
Q ss_pred CCeEEEECCCCCHHHHHHHH----cC----------CCcEEEecCCCC---------------CCcEEEecCCCCCCC--
Q 025148 111 ESKALCIGARVGQEVEALKR----VG----------VSDSVGIDLVPY---------------PPLVIEGDFHRQPFD-- 159 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~----~~----------~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~-- 159 (257)
+..|||||||+|.++..... .+ ..+|+|||.|+. .+.++.+|++++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 45899999999999743221 11 248999999864 589999999998774
Q ss_pred ---CCchhHHHHHHhhccccH---HHHHHHHHHhccCCcEEE
Q 025148 160 ---DETFDFEFSNVFDHALYP---DKFVMEIERTLKPGGVCV 195 (257)
Q Consensus 160 ---~~~fD~V~~~~l~h~~~~---~~~l~~~~r~LkpgG~l~ 195 (257)
.+++|+|+|..+..+.+- .+.+..+.|.|||||+++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 578999999755544332 357777789999999766
No 271
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.44 E-value=1.5e-07 Score=81.32 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=65.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------CCcEEEecCCCCCCCC---CchhHHH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------PPLVIEGDFHRQPFDD---ETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~~---~~fD~V~ 167 (257)
.+++.+|||+|||+|..+..+++. +.++|+++|+++. ++.++.+|+.+++..+ ++||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 467899999999999999999884 4569999999965 4677888887765432 5799987
Q ss_pred HH-------Hhhccc-----------cH-------HHHHHHHHHhccCCcEEEEEecc
Q 025148 168 SN-------VFDHAL-----------YP-------DKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 168 ~~-------~l~h~~-----------~~-------~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
++ ++..-+ +. .++++.+.+.|+ ||+++.+++.
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 52 332211 11 235666667776 9999988764
No 272
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.42 E-value=3.5e-08 Score=83.03 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHH--------cC-----CCcEEEecCCCC-------------------------------
Q 025148 109 SNESKALCIGARVGQEVEALKR--------VG-----VSDSVGIDLVPY------------------------------- 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~--------~~-----~~~v~gvD~s~~------------------------------- 144 (257)
+++.+|||+|+|+|..+..+.+ .+ ..+++++|..+.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 3457999999999998877543 22 248999998761
Q ss_pred ------------CCcEEEecCCC-CCCCC----CchhHHHHHHhhcccc----HHHHHHHHHHhccCCcEEEEEeccCCC
Q 025148 145 ------------PPLVIEGDFHR-QPFDD----ETFDFEFSNVFDHALY----PDKFVMEIERTLKPGGVCVLHVALSKR 203 (257)
Q Consensus 145 ------------~~~~~~~d~~~-~~~~~----~~fD~V~~~~l~h~~~----~~~~l~~~~r~LkpgG~l~i~~~~~~~ 203 (257)
.+.++.+|+.+ ++.-+ ..||+|+.+.+.--.+ ..++++++.+.|||||+++..+
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys----- 213 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT----- 213 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC-----
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe-----
Confidence 12355666655 33222 2799998864432222 3479999999999999988522
Q ss_pred cCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEE
Q 025148 204 ADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFR 245 (257)
Q Consensus 204 ~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~ 245 (257)
....+.+-+...||. +....||+-.++++..
T Consensus 214 ----------aa~~vrr~L~~aGF~-v~~~~g~~~kr~m~~a 244 (257)
T 2qy6_A 214 ----------SAGFVRRGLQEAGFT-MQKRKGFGRKREMLCG 244 (257)
T ss_dssp ----------CBHHHHHHHHHHTEE-EEEECCSTTCCCEEEE
T ss_pred ----------CCHHHHHHHHHCCCE-EEeCCCCCCCCceEEE
Confidence 234677788889996 6677888866555544
No 273
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=98.40 E-value=4e-07 Score=76.82 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEe-cCCCCCCCCC
Q 025148 98 FFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEG-DFHRQPFDDE 161 (257)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~-d~~~~~~~~~ 161 (257)
-+.++..+..++++++|||+||++|.++.+.+.. +...|+|+|+-.. .+.+..+ |+..++. .
T Consensus 82 KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~ 159 (321)
T 3lkz_A 82 KLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--E 159 (321)
T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--C
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--C
Confidence 3444555667788999999999999999988775 6668999999865 1234444 6655543 5
Q ss_pred chhHHHHHHhhccccHH-------HHHHHHHHhccCC-cEEEEEe
Q 025148 162 TFDFEFSNVFDHALYPD-------KFVMEIERTLKPG-GVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~-------~~l~~~~r~Lkpg-G~l~i~~ 198 (257)
.+|+|+|++-+--.++. ++|+-+.++|++| |-+++-+
T Consensus 160 ~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KV 204 (321)
T 3lkz_A 160 CCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKV 204 (321)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEE
Confidence 69999987445444332 2566667899999 8888876
No 274
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.35 E-value=5.6e-08 Score=86.31 Aligned_cols=86 Identities=16% Similarity=0.056 Sum_probs=63.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC-----------C-------------------CcEEEecCCCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY-----------P-------------------PLVIEGDFHRQPF 158 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~-----------~-------------------~~~~~~d~~~~~~ 158 (257)
++.+|||+|||+|..+..++.. +..+|+++|+++. + +.++++|+.+...
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 5789999999999999999886 6668999999966 2 3445555544311
Q ss_pred -CCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 159 -DDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 159 -~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..++||+|+.+-. ..+..++..+.+.||+||+++++.
T Consensus 127 ~~~~~fD~I~lDP~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPF---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCS---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCC---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1346898875421 234688999999999999888865
No 275
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=98.35 E-value=6.2e-07 Score=73.38 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=69.1
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEe-cCCCCCCCCCc
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEG-DFHRQPFDDET 162 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~-d~~~~~~~~~~ 162 (257)
+.++..+..++++++|||+||++|.++...+.. +..+|+|+|+-.. .+.+..+ |+..++- ..
T Consensus 67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~ 144 (267)
T 3p8z_A 67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EK 144 (267)
T ss_dssp HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CC
T ss_pred HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--cc
Confidence 334444557789999999999999999988875 6668999999855 3456666 7655543 66
Q ss_pred hhHHHHHHhhccccHH-------HHHHHHHHhccCCcEEEEEe
Q 025148 163 FDFEFSNVFDHALYPD-------KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~-------~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|.|+|+.-+--.++. ++|+-+.++|++ |-+++-+
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV 186 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence 9999997444333322 255666789998 7777765
No 276
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.35 E-value=1.1e-07 Score=88.20 Aligned_cols=93 Identities=19% Similarity=0.115 Sum_probs=68.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc----C---------------CCcEEEecCCCC---------------C-----CcE
Q 025148 108 LSNESKALCIGARVGQEVEALKRV----G---------------VSDSVGIDLVPY---------------P-----PLV 148 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~----~---------------~~~v~gvD~s~~---------------~-----~~~ 148 (257)
..++.+|||.|||+|.++..+.+. . ..+++|+|+++. . ..+
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 246 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence 356789999999999998877653 1 137999999965 2 467
Q ss_pred EEecCCCCC-CCCCchhHHHHH-Hhhccc--------------cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 149 IEGDFHRQP-FDDETFDFEFSN-VFDHAL--------------YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 149 ~~~d~~~~~-~~~~~fD~V~~~-~l~h~~--------------~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
.++|....+ ...++||+|++| -+.... ....+++.+.+.|||||++++.+|.
T Consensus 247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 788876543 345689999997 222111 1236889999999999999999874
No 277
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=98.32 E-value=6.2e-08 Score=86.25 Aligned_cols=87 Identities=15% Similarity=0.039 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC---------------C--CcEEEecCCCCC--CCCCchhHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY---------------P--PLVIEGDFHRQP--FDDETFDFEF 167 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~---------------~--~~~~~~d~~~~~--~~~~~fD~V~ 167 (257)
+++.+|||++||+|.++..++.. +..+|+++|+++. + +.++.+|+.+.- ...++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 45789999999999999998884 3368999999976 2 566777765431 1145799998
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+-. ..+..++..+.+.|++||+++++.
T Consensus 131 lDP~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDPF---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECCS---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCC---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 8642 234578899999999999888876
No 278
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.27 E-value=5e-07 Score=75.62 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=52.7
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------CCcEEEecCCCCCCCCCc-hhHH
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------PPLVIEGDFHRQPFDDET-FDFE 166 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~~~-fD~V 166 (257)
...++....+.++.+|||||||+|.++..+++.+..+|+|+|+++. ++.++++|+.++++++.. ...|
T Consensus 20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~v 99 (249)
T 3ftd_A 20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKV 99 (249)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEE
T ss_pred HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEE
Confidence 3334444445678899999999999999999986569999999964 357889999988876521 1145
Q ss_pred HHH
Q 025148 167 FSN 169 (257)
Q Consensus 167 ~~~ 169 (257)
++|
T Consensus 100 v~N 102 (249)
T 3ftd_A 100 VGN 102 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 279
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.20 E-value=2.4e-07 Score=81.35 Aligned_cols=90 Identities=19% Similarity=0.127 Sum_probs=64.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-----------------CCCcEEEecCCCC----------------CCcEEEec---C
Q 025148 110 NESKALCIGARVGQEVEALKRV-----------------GVSDSVGIDLVPY----------------PPLVIEGD---F 153 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~v~gvD~s~~----------------~~~~~~~d---~ 153 (257)
...+|+|+||++|..+..+.+. +..+|+..|+... +..++.+. +
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3468999999999877554321 2356778887644 11344443 4
Q ss_pred CCCCCCCCchhHHHHH-HhhccccH---------------------------------HHHHHHHHHhccCCcEEEEEec
Q 025148 154 HRQPFDDETFDFEFSN-VFDHALYP---------------------------------DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 154 ~~~~~~~~~fD~V~~~-~l~h~~~~---------------------------------~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
....|+++++|+|+|+ ++|++.+. ..+|+...+.|+|||.+++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 4467899999999996 88887541 2347888999999999999974
No 280
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.20 E-value=8e-07 Score=75.85 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=72.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------------CCcEEEecCCCC-CCCCCchhH
Q 025148 108 LSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------------PPLVIEGDFHRQ-PFDDETFDF 165 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------------~~~~~~~d~~~~-~~~~~~fD~ 165 (257)
.....+||-||.|.|..+..+.+. +..+|+.+|+++. ++.++.+|.... .-.+++||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 356689999999999999999986 5568999999965 456788887764 345678999
Q ss_pred HHHHHhhccc-----cHHHHHHHHHHhccCCcEEEEEec
Q 025148 166 EFSNVFDHAL-----YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 166 V~~~~l~h~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|+.+..+... .-.++++.+++.|+|||+++....
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 9886443221 234789999999999999999764
No 281
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.19 E-value=1e-06 Score=74.94 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=47.7
Q ss_pred HHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCC---CcEEEecCCCC-----------CCcEEEecCCCCCCCC
Q 025148 100 DDLKRKKLLSNESKALCIGARVGQEVEALKRVGV---SDSVGIDLVPY-----------PPLVIEGDFHRQPFDD 160 (257)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~-----------~~~~~~~d~~~~~~~~ 160 (257)
..++....+.++.+|||||||+|.++..+++.+. ++|+|+|+++. ++.++++|+.++++++
T Consensus 32 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 32 DAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 3344444457789999999999999999998643 23999999965 4678999999988754
No 282
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.14 E-value=4.1e-06 Score=80.00 Aligned_cols=97 Identities=12% Similarity=-0.077 Sum_probs=67.4
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHcC-------------------------------------------CCcEEEe
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRVG-------------------------------------------VSDSVGI 139 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------------------------------~~~v~gv 139 (257)
+......++..+||.+||+|.++..++..+ ..+++|+
T Consensus 183 l~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~ 262 (703)
T 3v97_A 183 VMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGS 262 (703)
T ss_dssp HHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred HHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEE
Confidence 333344677899999999999988776531 1479999
Q ss_pred cCCCC----------------CCcEEEecCCCCC--CCCCchhHHHHH--Hhhccc---cHH---HHHHHHHHhccCCcE
Q 025148 140 DLVPY----------------PPLVIEGDFHRQP--FDDETFDFEFSN--VFDHAL---YPD---KFVMEIERTLKPGGV 193 (257)
Q Consensus 140 D~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~~--~l~h~~---~~~---~~l~~~~r~LkpgG~ 193 (257)
|+++. .+.+.++|+.++. ..+++||+|++| .-+.+. +.. +.+.++.+.+.|||.
T Consensus 263 Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 263 DSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp ESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 99976 2578899998873 334489999998 222222 222 334555666678999
Q ss_pred EEEEec
Q 025148 194 CVLHVA 199 (257)
Q Consensus 194 l~i~~~ 199 (257)
+++.++
T Consensus 343 ~~ilt~ 348 (703)
T 3v97_A 343 LSLFSA 348 (703)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 999885
No 283
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=98.14 E-value=3.7e-06 Score=80.38 Aligned_cols=121 Identities=9% Similarity=-0.011 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C---CCcEEEecCCCCCC---------------------cEEEecCCCC-CCCCCc
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G---VSDSVGIDLVPYPP---------------------LVIEGDFHRQ-PFDDET 162 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~gvD~s~~~~---------------------~~~~~d~~~~-~~~~~~ 162 (257)
.++.+|||.|||+|.++..+++. + ..+++|+|+++... .+...|+... ....+.
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 46789999999999999998875 2 35799999997621 2222333332 223467
Q ss_pred hhHHHHH--Hhhccc---------------------------c-HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCc
Q 025148 163 FDFEFSN--VFDHAL---------------------------Y-PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDL 212 (257)
Q Consensus 163 fD~V~~~--~l~h~~---------------------------~-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~ 212 (257)
||+|++| ...... + ...+++.+.+.||+||++.+.+|..-- +...
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L---f~sg-- 474 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL---TAQG-- 474 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH---HCCS--
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh---ccCC--
Confidence 9999887 211000 0 234678899999999999999985321 0000
Q ss_pred CChhHHHHhc-ccCCcEEEEEec
Q 025148 213 FSVKPLVKLF-KRSEMVRVRKVD 234 (257)
Q Consensus 213 ~~~~~~~~~f-~~~~~~~~~~~~ 234 (257)
-....+++.+ ++..+..+....
T Consensus 475 ~~~kkLRk~LLe~~~I~aIIdLP 497 (878)
T 3s1s_A 475 NESKAFREFLVGNFGLEHIFLYP 497 (878)
T ss_dssp HHHHHHHHHHTTTTCEEEEEECC
T ss_pred hHHHHHHHHHHhCCCeEEEEECC
Confidence 0134566554 455555555553
No 284
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.14 E-value=9.7e-08 Score=80.41 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=61.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCC-------C----------------CCcEEEecCCCC-C-CCC--C
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP-------Y----------------PPLVIEGDFHRQ-P-FDD--E 161 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~-------~----------------~~~~~~~d~~~~-~-~~~--~ 161 (257)
.++.+|||+|||+|..+..+++.+ ++|+|+|+++ . .+.++++|..+. + +++ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 456899999999999999999975 5999999999 3 267888888764 2 444 6
Q ss_pred chhHHHHH-Hhhcc--------------------ccHHHHHHHHHHhccCCcEEEEEec
Q 025148 162 TFDFEFSN-VFDHA--------------------LYPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 162 ~fD~V~~~-~l~h~--------------------~~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+||+|+++ .+.|. .+..++++++.++.+. .+++..|
T Consensus 161 ~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p 217 (258)
T 2r6z_A 161 KPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRP 217 (258)
T ss_dssp CCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEE
T ss_pred CccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcC
Confidence 89998774 32221 2344556667776543 5666554
No 285
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=98.13 E-value=1.9e-06 Score=79.79 Aligned_cols=119 Identities=15% Similarity=0.073 Sum_probs=79.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc----CCCcEEEecCCCC-----------------CCcEEEecCCCC--C-CCCCchh
Q 025148 109 SNESKALCIGARVGQEVEALKRV----GVSDSVGIDLVPY-----------------PPLVIEGDFHRQ--P-FDDETFD 164 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~-----------------~~~~~~~d~~~~--~-~~~~~fD 164 (257)
.++.+|+|.+||+|.++..+.+. +..+++|+|+++. ...+.++|.... | .....||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 46789999999999998887764 3468999999965 124778887765 3 4567899
Q ss_pred HHHHH--Hhhcc-------cc---------------HHHHHHHHHHhcc-CCcEEEEEeccCCCcCcCCCCCcCChhHHH
Q 025148 165 FEFSN--VFDHA-------LY---------------PDKFVMEIERTLK-PGGVCVLHVALSKRADKYSANDLFSVKPLV 219 (257)
Q Consensus 165 ~V~~~--~l~h~-------~~---------------~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~y~~~~~~~~~~~~ 219 (257)
+|++| ..... .+ ...+++.+.+.|| +||++.+.+|..-- +... ....++
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~L---f~~~---~~~~iR 373 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVL---FRGN---AEGTIR 373 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHH---HCCT---HHHHHH
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHh---hCCc---hhHHHH
Confidence 99887 11110 01 1237899999999 99999999875321 1110 135566
Q ss_pred HhcccCC-cEEEEEe
Q 025148 220 KLFKRSE-MVRVRKV 233 (257)
Q Consensus 220 ~~f~~~~-~~~~~~~ 233 (257)
+.+-+.+ +..+...
T Consensus 374 k~Lle~~~l~~II~L 388 (542)
T 3lkd_A 374 KALLEEGAIDTVIGL 388 (542)
T ss_dssp HHHHHTTCEEEEEEC
T ss_pred HHHHhCCceeEEEEc
Confidence 6655544 4444444
No 286
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.07 E-value=2e-06 Score=72.02 Aligned_cols=66 Identities=14% Similarity=-0.024 Sum_probs=47.6
Q ss_pred HHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCc--EEEecCCCC-------------CCcEEEecCCCCCCCCC----
Q 025148 101 DLKRKKLLSNESKALCIGARVGQEVEALKRVGVSD--SVGIDLVPY-------------PPLVIEGDFHRQPFDDE---- 161 (257)
Q Consensus 101 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~gvD~s~~-------------~~~~~~~d~~~~~~~~~---- 161 (257)
.++....+.++++|||||||+|.++. +.. + .+ |+|+|+++. ++.++++|+.++++++.
T Consensus 12 ~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 88 (252)
T 1qyr_A 12 SIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKM 88 (252)
T ss_dssp HHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHH
T ss_pred HHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhccc
Confidence 33334445778899999999999999 765 3 36 999999955 35788899988876532
Q ss_pred -chhHHHHH
Q 025148 162 -TFDFEFSN 169 (257)
Q Consensus 162 -~fD~V~~~ 169 (257)
..|.|++|
T Consensus 89 ~~~~~vvsN 97 (252)
T 1qyr_A 89 GQPLRVFGN 97 (252)
T ss_dssp TSCEEEEEE
T ss_pred CCceEEEEC
Confidence 12456665
No 287
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.04 E-value=5.8e-07 Score=77.29 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=48.3
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------------CCcEEEecCCCCC--CC---CCchhHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------------PPLVIEGDFHRQP--FD---DETFDFE 166 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------------~~~~~~~d~~~~~--~~---~~~fD~V 166 (257)
.+.++++|||+|||+|..+..+++. +..+|+|+|+|+. ++.++++|+.+++ ++ .++||.|
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~V 102 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 102 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence 3467889999999999999999986 3569999999965 3567788877654 11 1468887
Q ss_pred HHH
Q 025148 167 FSN 169 (257)
Q Consensus 167 ~~~ 169 (257)
+++
T Consensus 103 l~D 105 (301)
T 1m6y_A 103 LMD 105 (301)
T ss_dssp EEE
T ss_pred EEc
Confidence 664
No 288
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=98.01 E-value=1.5e-06 Score=80.65 Aligned_cols=132 Identities=11% Similarity=0.044 Sum_probs=80.1
Q ss_pred CeEEEECCCCCHHHHHHHHc--------C--------CCcEEEecCCCC----------------CCcEEEecCCCCC-C
Q 025148 112 SKALCIGARVGQEVEALKRV--------G--------VSDSVGIDLVPY----------------PPLVIEGDFHRQP-F 158 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~--------~--------~~~v~gvD~s~~----------------~~~~~~~d~~~~~-~ 158 (257)
.+|||.+||+|.++..+.+. . ..+++|+|+++. .+.+.++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 49999999999998776431 1 357999999976 1222566655443 4
Q ss_pred CCCchhHHHHH---Hhhc-----------------------cc----cHHHHHHHHHHhccCCcEEEEEeccCCCcCcCC
Q 025148 159 DDETFDFEFSN---VFDH-----------------------AL----YPDKFVMEIERTLKPGGVCVLHVALSKRADKYS 208 (257)
Q Consensus 159 ~~~~fD~V~~~---~l~h-----------------------~~----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~ 208 (257)
++.+||+|++| .... +. ..-.+++.+.+.|||||++.+.+|..--...-
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~- 404 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNT- 404 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCG-
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCc-
Confidence 56789999997 2110 11 01257899999999999999998743210000
Q ss_pred CCCcCChhHHHHhcccCC-cEEEEEec-----CCCCc-eEEEEEccc
Q 025148 209 ANDLFSVKPLVKLFKRSE-MVRVRKVD-----GFGLD-TEVVFRKNA 248 (257)
Q Consensus 209 ~~~~~~~~~~~~~f~~~~-~~~~~~~~-----gf~~~-~~vv~~k~~ 248 (257)
-....+++.+-+.+ +..+.... +-+.. ..++++|+.
T Consensus 405 ----~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k 447 (544)
T 3khk_A 405 ----NNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDK 447 (544)
T ss_dssp ----GGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCC
T ss_pred ----chHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecCC
Confidence 02456666655554 44444443 22222 455666543
No 289
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.99 E-value=6.4e-07 Score=75.28 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred CCC--CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------------CCcEEEecCCCC-CCCCC
Q 025148 109 SNE--SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------------PPLVIEGDFHRQ-PFDDE 161 (257)
Q Consensus 109 ~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------------~~~~~~~d~~~~-~~~~~ 161 (257)
.++ .+|||+|||+|..+..+++.+. +|+++|+++. ++.++++|..+. +...+
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~ 163 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSS
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcc
Confidence 456 8999999999999999999865 8999999973 245778887653 32223
Q ss_pred chhHHHHH-HhhccccHHHHHHHHHHhccCCc
Q 025148 162 TFDFEFSN-VFDHALYPDKFVMEIERTLKPGG 192 (257)
Q Consensus 162 ~fD~V~~~-~l~h~~~~~~~l~~~~r~LkpgG 192 (257)
+||+|+++ .+.+ .....++++..++|++.+
T Consensus 164 ~fDvV~lDP~y~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 164 RPQVVYLDPMFPH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp CCSEEEECCCCCC-CCC-----HHHHHHHHHS
T ss_pred cCCEEEEcCCCCC-cccchHHHHHHHHHHHhh
Confidence 69999887 5544 222245555666666544
No 290
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.82 E-value=1.4e-05 Score=64.58 Aligned_cols=81 Identities=7% Similarity=0.001 Sum_probs=56.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------C------CcEEEecCCCC---------------
Q 025148 110 NESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------P------PLVIEGDFHRQ--------------- 156 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------~------~~~~~~d~~~~--------------- 156 (257)
+..+|||+||| .-+..+++...++|+.+|.+++ . +.++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 46799999985 6777777753569999999865 2 45677775432
Q ss_pred C--------C-CCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEE
Q 025148 157 P--------F-DDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 157 ~--------~-~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
+ . ..++||+|+.+.- .....+..+.+.|+|||++++
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~----k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR----FRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS----SHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHhhhhhccccCCCCCEEEEeCC----CchhHHHHHHHhcCCCeEEEE
Confidence 1 1 2367999987521 122556667799999999976
No 291
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.76 E-value=2.1e-06 Score=76.71 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=48.5
Q ss_pred cCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-----------------CCcEEEecCCCC-CC-CCCchhHHH
Q 025148 107 LLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-----------------PPLVIEGDFHRQ-PF-DDETFDFEF 167 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----------------~~~~~~~d~~~~-~~-~~~~fD~V~ 167 (257)
.+.+|.+|||+|||+|..+..+++.+ .+|+|+|+|+. ++.++++|+.+. +. ++++||+|+
T Consensus 90 ~l~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 90 FIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp GSCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred hcCCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 34458999999999999999998875 49999999965 256788888764 32 245799998
Q ss_pred HH
Q 025148 168 SN 169 (257)
Q Consensus 168 ~~ 169 (257)
++
T Consensus 169 lD 170 (410)
T 3ll7_A 169 VD 170 (410)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 292
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=97.74 E-value=7e-05 Score=63.23 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHH-hhcCCCCCeEEEECC------CCCHHHHHHHHc-CC-CcEEEecCCCC---CCcEEEecCCCCCC
Q 025148 91 KIQVFAKFFDDLKR-KKLLSNESKALCIGA------RVGQEVEALKRV-GV-SDSVGIDLVPY---PPLVIEGDFHRQPF 158 (257)
Q Consensus 91 ~~~~~~~~~~~l~~-~~~~~~~~~vLDiGc------G~G~~~~~l~~~-~~-~~v~gvD~s~~---~~~~~~~d~~~~~~ 158 (257)
.+..+..+++-+-. ......+++|||+|| .+|.. .+++. +. +.|+++|+.+- ...++++|......
T Consensus 89 nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~ 166 (344)
T 3r24_A 89 NVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHT 166 (344)
T ss_dssp HHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEEE
T ss_pred eHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCCeEEEcccccccc
Confidence 34456666666522 223477899999996 55663 33443 32 48999999975 23558899766443
Q ss_pred CCCchhHHHHH----Hhhccc--------cHHHHHHHHHHhccCCcEEEEEec
Q 025148 159 DDETFDFEFSN----VFDHAL--------YPDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 159 ~~~~fD~V~~~----~l~h~~--------~~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.++||+|+|+ .--+.. --+.++.-+.++|+|||.+++-+-
T Consensus 167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 4779999885 222211 134566777889999999999874
No 293
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.62 E-value=6.2e-05 Score=63.91 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=62.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHc------CCCcEEEecCCC----------------------------------------
Q 025148 110 NESKALCIGARVGQEVEALKRV------GVSDSVGIDLVP---------------------------------------- 143 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~---------------------------------------- 143 (257)
..+.|||+|+..|..+..+++. ...+|+++|..+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 4579999999999998887652 256899999642
Q ss_pred ---CCCcEEEecCCC-CC-CCCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 144 ---YPPLVIEGDFHR-QP-FDDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 144 ---~~~~~~~~d~~~-~~-~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.++.++.+++.+ ++ +++++||+|+.+. ++.......++.+.+.|+|||++++..
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D~y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-DLYESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-CSHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-CccccHHHHHHHHHhhcCCCEEEEEcC
Confidence 235567777654 22 4456899987753 122233468899999999999998843
No 294
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.61 E-value=9.4e-06 Score=71.46 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=64.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC-----------------------CcEEEecCCCC----CCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP-----------------------PLVIEGDFHRQ----PFDDE 161 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~-----------------------~~~~~~d~~~~----~~~~~ 161 (257)
.+..+||-||.|.|..+..+.+.+..+|+.+|+++.- +.++.+|.... .-..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4567999999999999999998766789999999761 23344444321 11235
Q ss_pred chhHHHHHHhhcc-----------ccHHHHHHHHHHhccCCcEEEEEe
Q 025148 162 TFDFEFSNVFDHA-----------LYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~~~l~h~-----------~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+||+|+.+....- ..-.++++.+++.|+|||+++.+.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 7999987644321 123467899999999999999865
No 295
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=97.49 E-value=3e-05 Score=68.13 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=65.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHcC-CCcEEEecCCCC---------------------CCcEEEecCCCCC-CCCCchh
Q 025148 108 LSNESKALCIGARVGQEVEALKRVG-VSDSVGIDLVPY---------------------PPLVIEGDFHRQP-FDDETFD 164 (257)
Q Consensus 108 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~---------------------~~~~~~~d~~~~~-~~~~~fD 164 (257)
.++|.+|||+.||.|.=+..+++.+ .+.|+++|+++. ++.+...|...++ ...+.||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 5789999999999999999988863 357999999965 2334455555442 3456799
Q ss_pred HHHHH-----H--hhc-----------------cc-cHHHHHHHHHHhccCCcEEEEEeccC
Q 025148 165 FEFSN-----V--FDH-----------------AL-YPDKFVMEIERTLKPGGVCVLHVALS 201 (257)
Q Consensus 165 ~V~~~-----~--l~h-----------------~~-~~~~~l~~~~r~LkpgG~l~i~~~~~ 201 (257)
.|+.+ . .-+ +. -..+++....+.|||||+|+-+|+..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 87543 1 100 00 01356788889999999999998743
No 296
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=97.30 E-value=0.00016 Score=61.93 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=76.7
Q ss_pred CCeEEEECCCCCHHHHHHH----H-cCCC--cEEEecCCCC-----------------------------CCcEEEecCC
Q 025148 111 ESKALCIGARVGQEVEALK----R-VGVS--DSVGIDLVPY-----------------------------PPLVIEGDFH 154 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~----~-~~~~--~v~gvD~s~~-----------------------------~~~~~~~d~~ 154 (257)
.-+|||+|-|+|....... + .+.. +++.+|..+- ...+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 3589999999998754322 2 2333 4466664321 0123445544
Q ss_pred CC--CCCCCchhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcE
Q 025148 155 RQ--PFDDETFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 155 ~~--~~~~~~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~ 228 (257)
+. .+++..||+|+-+.+.--.+| .++++.+++.++|||+++--+ ....+++-+.++||.
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt---------------aag~VRR~L~~aGF~ 241 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS---------------SSLSVRKSLLTLGFK 241 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC---------------CCHHHHHHHHHTTCE
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe---------------CcHHHHHHHHHCCCE
Confidence 32 234457898877766555555 479999999999999876422 356788899999996
Q ss_pred EEEEecCCCCceEEEEEc
Q 025148 229 RVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 229 ~~~~~~gf~~~~~vv~~k 246 (257)
+....||+-.++++...
T Consensus 242 -V~k~~G~g~KReml~A~ 258 (308)
T 3vyw_A 242 -VGSSREIGRKRKGTVAS 258 (308)
T ss_dssp -EEEEECC---CEEEEEE
T ss_pred -EEecCCCCCCCceeEEe
Confidence 67778998766665553
No 297
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=97.11 E-value=0.00062 Score=62.84 Aligned_cols=92 Identities=20% Similarity=0.143 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc----C----------CCcEEEecCCCC---------------CCcEEEecCCCCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRV----G----------VSDSVGIDLVPY---------------PPLVIEGDFHRQPFD 159 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~----~----------~~~v~gvD~s~~---------------~~~~~~~d~~~~~~~ 159 (257)
..+.+|+|-+||+|.++....+. . ...++|+|+++. ...+..+|....+..
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 56679999999999998766532 1 236999999865 234566666554432
Q ss_pred ----CCchhHHHHH-Hh--h-------ccc------cH-HHHHHHHHHhcc-------CCcEEEEEecc
Q 025148 160 ----DETFDFEFSN-VF--D-------HAL------YP-DKFVMEIERTLK-------PGGVCVLHVAL 200 (257)
Q Consensus 160 ----~~~fD~V~~~-~l--~-------h~~------~~-~~~l~~~~r~Lk-------pgG~l~i~~~~ 200 (257)
...||+|++| -+ . ... +. ..+++.+.+.|| +||++.+.+|.
T Consensus 296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence 3469999887 11 1 111 11 235688888887 79999999984
No 298
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=97.02 E-value=0.00074 Score=57.56 Aligned_cols=46 Identities=26% Similarity=0.236 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++..++.... .+++.|||++||+|..+..+++.+. +++|+|+++.
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~ 268 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPR 268 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHH
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHH
Confidence 44555544333 6789999999999999999988775 9999999875
No 299
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=96.50 E-value=0.0012 Score=71.20 Aligned_cols=122 Identities=23% Similarity=0.186 Sum_probs=53.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc-C-----CCcEEEecCCCCCC----------cEEEe--cCCC-CCCCCCchhHHHH-
Q 025148 109 SNESKALCIGARVGQEVEALKRV-G-----VSDSVGIDLVPYPP----------LVIEG--DFHR-QPFDDETFDFEFS- 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~-~-----~~~v~gvD~s~~~~----------~~~~~--d~~~-~~~~~~~fD~V~~- 168 (257)
.+..+|||||.|+|..+..+.+. + ..+++-.|+|+... .+... |..+ .++..++||+|++
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 45679999999999876554432 1 23678889986522 11111 2222 1335567999887
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEeccCC------CcCcCCC-----CCcCChhHHHHhcccCCcEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHVALSK------RADKYSA-----NDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~~~~~------~~~~y~~-----~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
++++-..+..+.++++++.|||||.+++...... ..| +.. ....+..++.+++.+.+|..+.
T Consensus 1319 ~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~-~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~ 1391 (2512)
T 2vz8_A 1319 CALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGF-LTSPEQGGRHLLSQDQWESLFAGASLHLVA 1391 (2512)
T ss_dssp CC--------------------CCEEEEEEC---------------------------CTTTTSSTTTTEEEEE
T ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeccccccccccccc-cccccccCCcccCHHHHHHHHHhCCCceee
Confidence 6887777888999999999999999988653210 000 000 1223455666677777776544
No 300
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.25 E-value=0.0042 Score=52.38 Aligned_cols=41 Identities=7% Similarity=-0.052 Sum_probs=34.3
Q ss_pred HHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 103 KRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
+....+++++.+||.+||.|..+..+++. .++|+|+|.++.
T Consensus 15 le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~ 55 (285)
T 1wg8_A 15 LDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPE 55 (285)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHH
T ss_pred HHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHH
Confidence 33334578899999999999999999997 469999999974
No 301
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=95.92 E-value=0.011 Score=49.25 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++..++... ..+++.|||..||+|..+....+.+. +++|+|+++.
T Consensus 200 ~l~~~~i~~~-~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~ 245 (260)
T 1g60_A 200 DLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAE 245 (260)
T ss_dssp HHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHH
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHH
Confidence 4455544333 47889999999999999999988775 9999999864
No 302
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.12 E-value=0.023 Score=49.51 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=37.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC------------CCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY------------PPLVIEGDFHRQ 156 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~------------~~~~~~~d~~~~ 156 (257)
++..|||||.|.|.++..|.+. ...+|+++|+++. ++.++.+|+.++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 3589999999999999999985 3358999999844 567788887554
No 303
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=93.92 E-value=0.17 Score=42.04 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=27.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHc--------CCCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKRV--------GVSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD~s~~ 144 (257)
.-.+.|+|+||-.|..+..+++. ...+|+|+|.-+.
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG 111 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTG 111 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSC
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCC
Confidence 45679999999999988886542 2469999995543
No 304
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=93.77 E-value=0.037 Score=48.80 Aligned_cols=91 Identities=19% Similarity=0.123 Sum_probs=56.6
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCC--------CcEEEecCCCCCC---------CCCchhH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYP--------PLVIEGDFHRQPF---------DDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~--------~~~~~~d~~~~~~---------~~~~fD~ 165 (257)
...+++|++||-+|||. |..+..+++. |..+|+++|.+++. ..++ |..+..+ ....+|+
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~~~~~~~g~g~Dv 257 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETI--DLRNSAPLRDQIDQILGKPEVDC 257 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEE--ETTSSSCHHHHHHHHHSSSCEEE
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEE--cCCCcchHHHHHHHHhCCCCCCE
Confidence 44568899999999976 7777777774 54489999988651 2222 2222111 1124676
Q ss_pred HHHHHhhcc---------ccHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNVFDHA---------LYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~l~h~---------~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+-.+-... ..+...+++..+.|++||.+++.
T Consensus 258 vid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 258 GVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp EEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred EEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 654321100 01235788999999999998764
No 305
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=93.72 E-value=0.03 Score=48.35 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=54.9
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCCCCCCCchhHHHHHHhhccc
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQPFDDETFDFEFSNVFDHAL 175 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~~~~~~~fD~V~~~~l~h~~ 175 (257)
..+++|++||-+|+|. |..+..+++.-..+|+++|.+++.. .++ .+... +.. .+|+|+-.+-.
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~--~~~-~~D~vid~~g~--- 244 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFY-TDPKQ--CKE-ELDFIISTIPT--- 244 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEE-SSGGG--CCS-CEEEEEECCCS---
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeec-CCHHH--Hhc-CCCEEEECCCc---
Confidence 3568899999999875 6677777775445999999988721 222 22222 122 57877643111
Q ss_pred cHHHHHHHHHHhccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+ ..++...+.|++||.+++.
T Consensus 245 -~-~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 245 -H-YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp -C-CCHHHHHTTEEEEEEEEEC
T ss_pred -H-HHHHHHHHHHhcCCEEEEE
Confidence 1 2567788999999998875
No 306
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=93.49 E-value=0.038 Score=48.14 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=53.8
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEecCCCC-----CCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGDFHRQ-----PFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d~~~~-----~~~~~~fD~V~~ 168 (257)
...++++++||-+|||. |..+..+++. +..+|+++|.+++.. .++..+-.++ ...++.+|+|+.
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid 264 (371)
T 1f8f_A 185 ALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALE 264 (371)
T ss_dssp TTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEE
Confidence 44568899999999876 6777777764 544799999886521 1221111110 001113555443
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. .. ....+++..+.|++||.+++.
T Consensus 265 ~----~g-~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 265 S----TG-SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp C----SC-CHHHHHHHHHTEEEEEEEEEC
T ss_pred C----CC-CHHHHHHHHHHHhcCCEEEEe
Confidence 2 11 125678899999999998875
No 307
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=93.20 E-value=0.078 Score=45.77 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc--CCCcEEEecCCCC
Q 025148 99 FDDLKRKKLLSNESKALCIGARVGQEVEALKRV--GVSDSVGIDLVPY 144 (257)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~ 144 (257)
+.+.+....+++|+.++|..||.|..+..+++. +.++|+|+|.++.
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~ 93 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQ 93 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHH
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHH
Confidence 334444444678999999999999999999885 4579999999964
No 308
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=92.66 E-value=0.0096 Score=50.20 Aligned_cols=91 Identities=11% Similarity=-0.034 Sum_probs=64.3
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCC-C---CCCCCchhHHHHH-Hhh
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHR-Q---PFDDETFDFEFSN-VFD 172 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~-~---~~~~~~fD~V~~~-~l~ 172 (257)
+..+||+=+|||.++..+.+.+ .+++.+|.++. .+.+.+.|... + .-+...||+|+.+ -++
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe 170 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYE 170 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCC
T ss_pred CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCC
Confidence 5678999999999999988844 69999999865 24555666432 1 1223469999887 455
Q ss_pred ccccHHHHHHHHHH--hccCCcEEEEEeccCC
Q 025148 173 HALYPDKFVMEIER--TLKPGGVCVLHVALSK 202 (257)
Q Consensus 173 h~~~~~~~l~~~~r--~LkpgG~l~i~~~~~~ 202 (257)
.-.+.+++++.+.+ .+.|+|++++..|...
T Consensus 171 ~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 171 RKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp STTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CCcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 33455666666665 5679999999988543
No 309
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=92.17 E-value=0.74 Score=39.63 Aligned_cols=132 Identities=10% Similarity=0.013 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCC----------------------------
Q 025148 93 QVFAKFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVP---------------------------- 143 (257)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~---------------------------- 143 (257)
..+.+.+...+.. .+...|+.+|||.......+... +...++-+|.-+
T Consensus 83 ~~iD~~v~~fl~~---~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~ 159 (334)
T 1rjd_A 83 VGIDAAILEFLVA---NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 159 (334)
T ss_dssp HHHHHHHHHHHHH---CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHH---CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccc
Confidence 3344444444433 34578999999999999999874 556777787521
Q ss_pred -------CCCcEEEecCCCCCC---------CCCchhHHHHH-Hhhccc--cHHHHHHHHHHhccCCcEEEEEeccCC--
Q 025148 144 -------YPPLVIEGDFHRQPF---------DDETFDFEFSN-VFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSK-- 202 (257)
Q Consensus 144 -------~~~~~~~~d~~~~~~---------~~~~fD~V~~~-~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~-- 202 (257)
.....+.+|+.+... ..+...++++. ++.++. ...++++.+.+.. |+|.+++......
T Consensus 160 ~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~ 238 (334)
T 1rjd_A 160 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQ 238 (334)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCS
T ss_pred cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCC
Confidence 123456667765321 11233456664 666665 3335667777766 7777654322111
Q ss_pred ---C-------------cCcC-CCCCcCChhHHHHhcccCCcE
Q 025148 203 ---R-------------ADKY-SANDLFSVKPLVKLFKRSEMV 228 (257)
Q Consensus 203 ---~-------------~~~y-~~~~~~~~~~~~~~f~~~~~~ 228 (257)
. ...+ ....+.+.++..+.|.+.||.
T Consensus 239 ~~~~fg~~m~~~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 239 PNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp TTCCHHHHHHHHHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred CcchHHHHHHHHhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 0 0111 111344788899999999997
No 310
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=92.13 E-value=0.016 Score=49.14 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
...++++++.|+|||||.+++.+..
T Consensus 75 ~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 75 ELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCcEEEEEECC
Confidence 3456789999999999999998753
No 311
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=92.12 E-value=0.084 Score=44.79 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=51.8
Q ss_pred HhhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC--------cEEEecCCCCCCCCCchhHHHHHHhhcc
Q 025148 104 RKKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP--------LVIEGDFHRQPFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~--------~~~~~d~~~~~~~~~~fD~V~~~~l~h~ 174 (257)
....+++|++||-+|+|. |..+..+++....+|+++| +++.. ..+..|...+ .+.+|+|+-.+-.
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v---~~g~Dvv~d~~g~-- 209 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQV---TQKYFAIFDAVNS-- 209 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGC---CSCEEEEECC-----
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHh---CCCccEEEECCCc--
Confidence 345568899999999954 6667777765334999999 77621 1111122222 4568887653211
Q ss_pred ccHHHHHHHHHHhccCCcEEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
..+.+..+.|+++|.++..
T Consensus 210 ----~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 210 ----QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp --------TTGGGEEEEEEEEEE
T ss_pred ----hhHHHHHHHhcCCCEEEEE
Confidence 1235677899999998876
No 312
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=91.73 E-value=0.11 Score=45.67 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=58.2
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCC--------CCcEEEecCCCCC-C--------CCCchhH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPY--------PPLVIEGDFHRQP-F--------DDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~--------~~~~~~~d~~~~~-~--------~~~~fD~ 165 (257)
...+++|++||-+|||. |..+..+++. |..+|+++|.+++ ....+ +..+.+ + ....+|+
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE--ETTSSSCHHHHHHHHHSSSCEEE
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEE--ccCCcchHHHHHHHHhCCCCCCE
Confidence 34568899999999876 6777777775 5447999998865 12222 221111 0 1124777
Q ss_pred HHHHH-h---------hccccHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNV-F---------DHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~-l---------~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+-.+ - .|..++...+++..+.|++||.+++.
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 258 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 65421 1 23345556889999999999998764
No 313
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=91.62 E-value=0.12 Score=44.27 Aligned_cols=89 Identities=12% Similarity=0.021 Sum_probs=51.9
Q ss_pred HhhcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCC--------CCCchhHH
Q 025148 104 RKKLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPF--------DDETFDFE 166 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~V 166 (257)
....++++++||-+|+| .|..+..+++...++|+++|.+++.... ...|..+..+ ....+|+|
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvv 217 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAA 217 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEE
Confidence 34556889999999997 3666666666433499999998773211 0112111111 11246665
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.++- . ....+..+.|++||.+++.-
T Consensus 218 id~~g----~--~~~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 218 IDSIG----G--PDGNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp EESSC----H--HHHHHHHHTEEEEEEEEECC
T ss_pred EECCC----C--hhHHHHHHHhcCCCEEEEEe
Confidence 44211 1 12234458999999988753
No 314
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=91.29 E-value=0.049 Score=47.22 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=52.3
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEecC---CCC-----CCCCCchhH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGDF---HRQ-----PFDDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d~---~~~-----~~~~~~fD~ 165 (257)
...+++|++||-+|+|. |..+..+++. |..+|+++|.+++.. .++..+. .+. ...++.+|+
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~ 245 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV 245 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCE
Confidence 44568899999999875 6677777764 444899999886521 1121110 000 000022444
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+-. ... ...++...+.|++||.+++.
T Consensus 246 vid~----~g~-~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 246 TIEC----TGA-EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp EEEC----SCC-HHHHHHHHHHSCTTCEEEEC
T ss_pred EEEC----CCC-hHHHHHHHHHhcCCCEEEEE
Confidence 4322 211 24678889999999998874
No 315
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=91.18 E-value=0.28 Score=42.73 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHhhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCC--CC-------CCCCchh
Q 025148 103 KRKKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHR--QP-------FDDETFD 164 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~--~~-------~~~~~fD 164 (257)
.....++++++||-+|+|. |..+..+++. |..+|+++|.+++.... ...|..+ .. ..++.+|
T Consensus 186 ~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D 265 (378)
T 3uko_A 186 WNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVD 265 (378)
T ss_dssp HTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCC
Confidence 3345568899999999864 6666666664 55589999998872111 0111110 00 0112355
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+|+-. ... ...++...+.|++| |.+++.
T Consensus 266 ~vid~----~g~-~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 266 YSFEC----IGN-VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp EEEEC----SCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred EEEEC----CCC-HHHHHHHHHHhhccCCEEEEE
Confidence 54332 222 25678899999997 998875
No 316
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=91.14 E-value=0.24 Score=43.13 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=55.3
Q ss_pred HhhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCC--------C-cEEEecCCCCC----------CCCCc
Q 025148 104 RKKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYP--------P-LVIEGDFHRQP----------FDDET 162 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~--------~-~~~~~d~~~~~----------~~~~~ 162 (257)
....+++|++||-+|+|. |..+..+++. |..+|+++|.+++. . .++ |..+.. ..++.
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi--~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATV--DPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE--CTTSSCHHHHHHSTTSSSTTC
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE--CCCCcCHHHHHHhhhhccCCC
Confidence 345578899999999865 6666667764 54489999988651 1 122 111110 11235
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+|+-.+ . -...++.+.+.|++||.+++.
T Consensus 254 ~Dvvid~~----G-~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 254 VDVVIECA----G-VAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp EEEEEECS----C-CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECC----C-CHHHHHHHHHHhccCCEEEEE
Confidence 67665431 1 125788899999999998875
No 317
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=90.32 E-value=0.081 Score=45.98 Aligned_cols=88 Identities=9% Similarity=-0.083 Sum_probs=54.0
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCC--------C-cEEEecCCCCC------CCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYP--------P-LVIEGDFHRQP------FDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~--------~-~~~~~d~~~~~------~~~~~fD~V~~ 168 (257)
...+++|++||-+|+|. |..+..+++....+|+++|.+++. . .++..+..++. .....+|+|+.
T Consensus 184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid 263 (363)
T 3uog_A 184 KGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILE 263 (363)
T ss_dssp TTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEE
Confidence 44568899999999775 666666776544599999988651 1 22221101100 01224666544
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+- ...++...+.|++||.+++.-
T Consensus 264 ~~g------~~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 264 IAG------GAGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp ETT------SSCHHHHHHHEEEEEEEEEEC
T ss_pred CCC------hHHHHHHHHHhhcCCEEEEEe
Confidence 321 135677889999999988763
No 318
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=90.25 E-value=0.12 Score=40.57 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=49.3
Q ss_pred hcCCCCCeEEEECCC--CCHHHHHHHH-cCCCcEEEecCCCCC--------CcEEEecCCCCC--------CCCCchhHH
Q 025148 106 KLLSNESKALCIGAR--VGQEVEALKR-VGVSDSVGIDLVPYP--------PLVIEGDFHRQP--------FDDETFDFE 166 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG--~G~~~~~l~~-~~~~~v~gvD~s~~~--------~~~~~~d~~~~~--------~~~~~fD~V 166 (257)
..++++++||..|++ .|..+..++. .| .+|+++|.+++. ... ..|..+.. ...+.+|++
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~v 111 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRLGVEY-VGDSRSVDFADEILELTDGYGVDVV 111 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTTCCSE-EEETTCSTHHHHHHHHTTTCCEEEE
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHcCCCE-EeeCCcHHHHHHHHHHhCCCCCeEE
Confidence 346788999999953 3444444444 35 489999987541 111 11222111 011235555
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.++ . ...+++..+.|++||.+++.
T Consensus 112 i~~~----g--~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 112 LNSL----A--GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp EECC----C--THHHHHHHHTEEEEEEEEEC
T ss_pred EECC----c--hHHHHHHHHHhccCCEEEEE
Confidence 4432 1 25678899999999998875
No 319
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=90.19 E-value=0.11 Score=44.74 Aligned_cols=87 Identities=13% Similarity=0.025 Sum_probs=54.2
Q ss_pred HhhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCC--------C-cEEEecCCCCCC--------CCCchh
Q 025148 104 RKKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYP--------P-LVIEGDFHRQPF--------DDETFD 164 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~--------~-~~~~~d~~~~~~--------~~~~fD 164 (257)
....++++++||-+|+|. |..+..+++. |..+|+++|.+++. . .++ |..+..+ ....+|
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDII--NYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEE--CGGGSCHHHHHHHHTTTCCEE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEE--cCCCcCHHHHHHHHcCCCCCC
Confidence 345568899999999875 6667777775 44489999988652 1 122 1111110 112356
Q ss_pred HHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 165 FEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 165 ~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+-. ... ...+++..+.|++||.+++.
T Consensus 238 ~v~d~----~g~-~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 238 KVVIA----GGD-VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp EEEEC----SSC-TTHHHHHHHHEEEEEEEEEC
T ss_pred EEEEC----CCC-hHHHHHHHHHHhcCCEEEEe
Confidence 55432 111 14678889999999998865
No 320
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=90.07 E-value=0.13 Score=45.24 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=43.9
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC----------CCcEEEecCCCCCC--------CCCchhHHHH
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY----------PPLVIEGDFHRQPF--------DDETFDFEFS 168 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~----------~~~~~~~d~~~~~~--------~~~~fD~V~~ 168 (257)
.+++|+-||.|.++..+.+.|...+.++|+++. ...++++|+.++.. ....+|+|+.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g 77 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG 77 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence 589999999999999998888756789999866 34567788877632 2356888753
No 321
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=90.05 E-value=0.09 Score=45.11 Aligned_cols=88 Identities=10% Similarity=-0.032 Sum_probs=53.7
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCCC------CCchhHHHHHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPFD------DETFDFEFSNV 170 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~~------~~~fD~V~~~~ 170 (257)
...++++++||-+|+|. |..+..+++.-..+|+++|.+++.... ...|..+..+. .+.+|+|+-.
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~- 239 (340)
T 3s2e_A 161 VTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVT- 239 (340)
T ss_dssp TTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEES-
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEe-
Confidence 44568899999999976 778888887544599999988662111 01111111100 0123333221
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. -...++.+.+.|++||.+++.
T Consensus 240 ---~g-~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 240 ---AV-SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp ---SC-CHHHHHHHHHHEEEEEEEEEC
T ss_pred ---CC-CHHHHHHHHHHhccCCEEEEe
Confidence 11 235788899999999998875
No 322
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=89.85 E-value=0.33 Score=42.17 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=52.2
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCC--CCC-------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHR--QPF-------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~--~~~-------~~~~fD~V 166 (257)
...++++++||-+|+|. |..+..+++. +..+|+++|.+++.... ...|..+ ..+ .++.+|+|
T Consensus 187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~v 266 (374)
T 1cdo_A 187 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFS 266 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEE
Confidence 44567899999999864 5666666664 44379999988763211 1112111 000 00124443
Q ss_pred HHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+. .... ...++...+.|++| |.+++.
T Consensus 267 id----~~g~-~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 267 LE----CVGN-VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp EE----CSCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred EE----CCCC-HHHHHHHHHHhhcCCcEEEEE
Confidence 32 2211 25678899999999 998764
No 323
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=89.82 E-value=0.3 Score=46.23 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=43.3
Q ss_pred CchhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 161 ETFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
..+|.++.+.+.--.+| .+++..+.++++|||.+.-.. ....+++.+.+.|+. +....||
T Consensus 170 ~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~---------------~~~~vr~~l~~aGf~-~~~~~~~ 233 (689)
T 3pvc_A 170 NQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT---------------AAGFVRRGLQQAGFN-VTKVKGF 233 (689)
T ss_dssp TCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC---------------CCHHHHHHHHHTTCE-EEEEECS
T ss_pred CceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc---------------CcHHHHHHHHhCCeE-EEeccCC
Confidence 55777766533322233 578999999999999866432 345778888999985 5555666
Q ss_pred CCceEE
Q 025148 237 GLDTEV 242 (257)
Q Consensus 237 ~~~~~v 242 (257)
+-..+.
T Consensus 234 ~~k~~~ 239 (689)
T 3pvc_A 234 GQKREM 239 (689)
T ss_dssp SSSCEE
T ss_pred Cccccc
Confidence 655444
No 324
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=89.72 E-value=0.35 Score=41.34 Aligned_cols=46 Identities=13% Similarity=0.059 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++..++. ....+|+.|||.-||+|..+....+.+. +.+|+|+++.
T Consensus 240 ~l~~~~i~-~~~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~ 285 (323)
T 1boo_A 240 KLPEFFIR-MLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPE 285 (323)
T ss_dssp HHHHHHHH-HHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHH
T ss_pred HHHHHHHH-HhCCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHH
Confidence 34444443 2347889999999999999999888775 9999999875
No 325
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=89.71 E-value=0.37 Score=41.49 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=52.1
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCC--------C-cEEEecCCC-CCC--------C---CCc
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYP--------P-LVIEGDFHR-QPF--------D---DET 162 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~--------~-~~~~~d~~~-~~~--------~---~~~ 162 (257)
...++++++||-+|+|. |..+..+++.-..+|+++|.+++. . .++ |..+ ..+ . .+.
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~--~~~~~~~~~~~i~~~~~~~~g~g 240 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTL--VVDPAKEEESSIIERIRSAIGDL 240 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE--ECCTTTSCHHHHHHHHHHHSSSC
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEE--cCcccccHHHHHHHHhccccCCC
Confidence 44568899999999865 666666666433479999988652 1 122 1111 110 0 123
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+|+.. ... ...++...+.|+++|.+++.
T Consensus 241 ~D~vid~----~g~-~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 241 PNVTIDC----SGN-EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp CSEEEEC----SCC-HHHHHHHHHHSCTTCEEEEC
T ss_pred CCEEEEC----CCC-HHHHHHHHHHHhcCCEEEEE
Confidence 5554332 111 24678889999999998875
No 326
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=89.52 E-value=0.14 Score=43.86 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCcEE--------EecCCCCCC-------C
Q 025148 97 KFFDDLKRKKLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPLVI--------EGDFHRQPF-------D 159 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~~--------~~d~~~~~~-------~ 159 (257)
..+..+.....++++++||-.||+ .|..+..+++....+|+++|.+++..... ..|..+..+ .
T Consensus 136 tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 215 (336)
T 4b7c_A 136 TAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKREC 215 (336)
T ss_dssp HHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhc
Confidence 334444345567889999999983 36666666664344999999876521111 112111110 0
Q ss_pred CCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 160 DETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 160 ~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+.+|+|+.++ . ...++...+.|++||.+++.
T Consensus 216 ~~~~d~vi~~~----g--~~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 216 PKGIDVFFDNV----G--GEILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp TTCEEEEEESS----C--HHHHHHHHTTEEEEEEEEEC
T ss_pred CCCceEEEECC----C--cchHHHHHHHHhhCCEEEEE
Confidence 12355544321 1 14678889999999998875
No 327
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=89.43 E-value=0.33 Score=42.99 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=30.6
Q ss_pred CCCCeEEEECCCCCHHHHHHH-Hc-C-CCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALK-RV-G-VSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~-~~-~-~~~v~gvD~s~~ 144 (257)
+++..++|+||+.|..+..++ +. + .++|+++|.++.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~ 263 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRI 263 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 678899999999999999887 43 3 369999999976
No 328
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=89.06 E-value=0.41 Score=41.54 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=52.4
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEE-------EecCCC--CCC-------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVI-------EGDFHR--QPF-------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~-------~~d~~~--~~~-------~~~~fD~V 166 (257)
...++++++||-+|+|. |..+..+++. +..+|+++|.+++..... ..|..+ ..+ .++.+|+|
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~v 265 (374)
T 2jhf_A 186 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFS 265 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEE
Confidence 44568899999999865 5666666664 433799999887632111 111111 000 01134444
Q ss_pred HHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+.. ... ...++...+.|+++ |.+++.
T Consensus 266 id~----~g~-~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 266 FEV----IGR-LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp EEC----SCC-HHHHHHHHHHBCTTTCEEEEC
T ss_pred EEC----CCC-HHHHHHHHHHhhcCCcEEEEe
Confidence 322 211 25678889999999 998764
No 329
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=88.73 E-value=0.34 Score=42.06 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=52.7
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEE-------EecCCC--CCC-------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVI-------EGDFHR--QPF-------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~-------~~d~~~--~~~-------~~~~fD~V 166 (257)
...++++++||-+|+|. |..+..+++. +..+|+++|.+++..... ..|..+ ..+ .++.+|+|
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvv 265 (373)
T 1p0f_A 186 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYA 265 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEE
Confidence 44568899999999865 5666666664 544899999887632110 111111 000 01134544
Q ss_pred HHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+-. ... ...++...+.|+++ |.+++.
T Consensus 266 id~----~g~-~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 266 VEC----AGR-IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp EEC----SCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred EEC----CCC-HHHHHHHHHHHhcCCCEEEEE
Confidence 332 211 25678889999999 998764
No 330
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=88.68 E-value=0.47 Score=41.12 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=51.3
Q ss_pred CCCeEEEEC-CCC-CHHHHHHHHc-CCCcEEEecCCCCCC--------cEEEecCCC-C-----CCCCCchhHHHHHHhh
Q 025148 110 NESKALCIG-ARV-GQEVEALKRV-GVSDSVGIDLVPYPP--------LVIEGDFHR-Q-----PFDDETFDFEFSNVFD 172 (257)
Q Consensus 110 ~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~gvD~s~~~~--------~~~~~d~~~-~-----~~~~~~fD~V~~~~l~ 172 (257)
++++||=+| +|. |..+..+++. +..+|+++|.+++.. ..+ .|..+ . ....+.+|+|+..+-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~v-i~~~~~~~~~v~~~~~~g~Dvvid~~g- 248 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHV-IDHSKPLAAEVAALGLGAPAFVFSTTH- 248 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEE-ECTTSCHHHHHHTTCSCCEEEEEECSC-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEE-EeCCCCHHHHHHHhcCCCceEEEECCC-
Confidence 788999998 554 7777888875 667999999986511 111 11111 0 011234555543211
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
-...++++.+.|++||.+++.
T Consensus 249 ----~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 249 ----TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp ----HHHHHHHHHHHSCTTCEEEEC
T ss_pred ----chhhHHHHHHHhcCCCEEEEE
Confidence 225778899999999999875
No 331
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=88.64 E-value=0.13 Score=43.91 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=50.6
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCc-------EEEecCCC-CCC-------CCCchhHHH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPL-------VIEGDFHR-QPF-------DDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~-------~~~~d~~~-~~~-------~~~~fD~V~ 167 (257)
...++++++||-.|| |.|..+..++.....+|+++|.+++... ....|..+ ..+ ..+.+|+++
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi 219 (333)
T 1v3u_A 140 VCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYF 219 (333)
T ss_dssp TSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred hhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEE
Confidence 345678999999998 3455555555533349999998754110 01122222 110 012355554
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.++- . ..+++..+.|++||.+++.
T Consensus 220 ~~~g----~--~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 220 DNVG----G--EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp ESSC----H--HHHHHHHTTEEEEEEEEEC
T ss_pred ECCC----h--HHHHHHHHHHhcCCEEEEE
Confidence 4321 1 3578888999999998764
No 332
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=88.62 E-value=0.44 Score=41.38 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=52.1
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcEE-------EecCCC--CCC-------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLVI-------EGDFHR--QPF-------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~~-------~~d~~~--~~~-------~~~~fD~V 166 (257)
...++++++||-+|+|. |..+..+++. +..+|+++|.+++..... ..|..+ ..+ .++.+|+|
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvv 269 (376)
T 1e3i_A 190 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYS 269 (376)
T ss_dssp TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEE
Confidence 44567899999999864 5666666664 444899999887632111 111111 000 00124443
Q ss_pred HHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+- .... ...+++..+.|++| |.+++.
T Consensus 270 id----~~G~-~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 270 LD----CAGT-AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp EE----SSCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred EE----CCCC-HHHHHHHHHHhhcCCCEEEEE
Confidence 32 2221 25678899999999 998764
No 333
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=88.14 E-value=0.31 Score=45.93 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=46.5
Q ss_pred CchhHHHHHHhhccccH----HHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCC
Q 025148 161 ETFDFEFSNVFDHALYP----DKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGF 236 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf 236 (257)
..||+++.+.+..-.+| .++++.+.+.++|||.+.-.. ....+++.+.+.||. +....|+
T Consensus 178 ~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~---------------~~~~vr~~L~~aGf~-v~~~~~~ 241 (676)
T 3ps9_A 178 QKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT---------------SAGFVRRGLQDAGFT-MQKRKGF 241 (676)
T ss_dssp TCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC---------------CCHHHHHHHHHHTCE-EEEEECS
T ss_pred CcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc---------------CcHHHHHHHHhCCeE-EEecccc
Confidence 56888776654433344 468899999999999876533 245778888889985 4556677
Q ss_pred CCceEEEE
Q 025148 237 GLDTEVVF 244 (257)
Q Consensus 237 ~~~~~vv~ 244 (257)
+-..++..
T Consensus 242 g~krem~~ 249 (676)
T 3ps9_A 242 GRKREMLC 249 (676)
T ss_dssp TTCCEEEE
T ss_pred ccchhhhh
Confidence 65555443
No 334
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=88.05 E-value=0.65 Score=39.55 Aligned_cols=117 Identities=10% Similarity=0.034 Sum_probs=71.7
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC------------------CCcEEEecCCCCCCCC----Cchh-----
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY------------------PPLVIEGDFHRQPFDD----ETFD----- 164 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~------------------~~~~~~~d~~~~~~~~----~~fD----- 164 (257)
..|+++|||-=.....+.......++-+|. |. ...++.+|+.+ .+.+ ..||
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 579999999877766655322357888883 22 23466777765 3211 2233
Q ss_pred HHHH-HHhhccc--cHHHHHHHHHHhccCCcEEEEEeccCCCc-----------CcCC-----------CCCcC-C-hhH
Q 025148 165 FEFS-NVFDHAL--YPDKFVMEIERTLKPGGVCVLHVALSKRA-----------DKYS-----------ANDLF-S-VKP 217 (257)
Q Consensus 165 ~V~~-~~l~h~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----------~~y~-----------~~~~~-~-~~~ 217 (257)
++++ .+++++. +...+++.+...+.||+.+++.....+.. ..+. .-.++ + .++
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~ 261 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAV 261 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCC
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChHH
Confidence 2344 4777776 34567888888888999999986432100 1111 11122 4 678
Q ss_pred HHHhcccCCcEEE
Q 025148 218 LVKLFKRSEMVRV 230 (257)
Q Consensus 218 ~~~~f~~~~~~~~ 230 (257)
+.++|.+.||..+
T Consensus 262 ~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 262 VADWLNRHGWRAT 274 (310)
T ss_dssp HHHHHTTTTEEEE
T ss_pred HHHHHHHCcCccc
Confidence 8889998888766
No 335
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=88.02 E-value=0.2 Score=43.12 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=52.8
Q ss_pred HhhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCCC------CCCCchhHH
Q 025148 104 RKKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQP------FDDETFDFE 166 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~~------~~~~~fD~V 166 (257)
....++++++||-+|+ |.|..+..+++....+|+++|.+++.. .++..+ .+.. .....+|+|
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dvv 231 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVDMV 231 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCceEE
Confidence 3455688999999998 336666666665345999999887621 122111 1110 111246665
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.++- . ..++...+.|++||.+++.
T Consensus 232 id~~g----~--~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 232 VDPIG----G--PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EESCC--------CHHHHHHTEEEEEEEEEC
T ss_pred EECCc----h--hHHHHHHHhhcCCCEEEEE
Confidence 54311 1 2567888999999998875
No 336
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=87.98 E-value=0.64 Score=39.72 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHcCCCcEEEecCCC
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRVGVSDSVGIDLVP 143 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~ 143 (257)
.++..++.. ...+++.|||.=||+|..+....+.+. +.+|+|+++
T Consensus 230 ~l~~~~i~~-~~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~ 274 (319)
T 1eg2_A 230 AVIERLVRA-LSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAP 274 (319)
T ss_dssp HHHHHHHHH-HSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESST
T ss_pred HHHHHHHHH-hCCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCc
Confidence 444454433 347889999999999999999888775 999999987
No 337
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=87.92 E-value=0.41 Score=41.49 Aligned_cols=88 Identities=22% Similarity=0.179 Sum_probs=52.4
Q ss_pred hhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCC--CCC-------CCCchhHH
Q 025148 105 KKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHR--QPF-------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~--~~~-------~~~~fD~V 166 (257)
...++++++||-+|+|. |..+..+++. |..+|+++|.+++.... ...|..+ ..+ .++.+|+|
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~v 264 (373)
T 2fzw_A 185 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYS 264 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEE
Confidence 44568899999999865 5666666664 54489999988763211 0111111 000 01134554
Q ss_pred HHHHhhccccHHHHHHHHHHhccCC-cEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPG-GVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~Lkpg-G~l~i~ 197 (257)
+.. ... ...+++..+.|+++ |.+++.
T Consensus 265 id~----~g~-~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 265 FEC----IGN-VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp EEC----SCC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred EEC----CCc-HHHHHHHHHhhccCCcEEEEE
Confidence 332 111 25678889999999 998864
No 338
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=87.84 E-value=0.064 Score=46.05 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecc
Q 025148 176 YPDKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
...+.+++++|+|||||.+++.+..
T Consensus 62 ~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 62 WFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHCcCCcEEEEEECC
Confidence 4567889999999999999998753
No 339
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=86.94 E-value=1 Score=38.74 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=52.6
Q ss_pred HhhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE--------EEecCCCC---C--------CCCCc
Q 025148 104 RKKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV--------IEGDFHRQ---P--------FDDET 162 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~--------~~~d~~~~---~--------~~~~~ 162 (257)
....+++|++||-+|+|. |..+..+++. |...|+++|.+++.... +....... . .....
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g 252 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIE 252 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCC
Confidence 345578899999999865 6666777775 54349999988652111 11000000 0 01123
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 163 FDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 163 fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+|+|+-. ... ...++...+.|++||.+++.
T Consensus 253 ~Dvvid~----~g~-~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 253 PAVALEC----TGV-ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp CSEEEEC----SCC-HHHHHHHHHHSCTTCEEEEC
T ss_pred CCEEEEC----CCC-hHHHHHHHHHhcCCCEEEEE
Confidence 4443321 111 24678889999999998875
No 340
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=86.60 E-value=0.35 Score=41.38 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=50.5
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCCCC------CchhHHHHHHhh
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPFDD------ETFDFEFSNVFD 172 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~~~------~~fD~V~~~~l~ 172 (257)
.++++++||-+|+|. |..+..+++....+|+++|.++..... ...|..+..+.+ +.+|+|+..
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~--- 237 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVT--- 237 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEES---
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEEC---
Confidence 467899999999964 566666666433599999988652111 111222111000 123433321
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
... ...++...+.|+++|.+++.
T Consensus 238 -~g~-~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 238 -AVS-KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp -SCC-HHHHHHHHHHEEEEEEEEEC
T ss_pred -CCC-HHHHHHHHHHhhcCCEEEEe
Confidence 111 25678889999999998764
No 341
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=86.57 E-value=0.17 Score=43.50 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=52.0
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEecCCCCCCC--------CCchhHHH
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGDFHRQPFD--------DETFDFEF 167 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d~~~~~~~--------~~~fD~V~ 167 (257)
.++++++||-+|+|. |..+..+++. +..+|+++|.+++.. .++.. .+ .+. ...+|+|+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~--~~-~~~~~v~~~t~g~g~d~v~ 244 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKS--GA-GAADAIRELTGGQGATAVF 244 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEEC--ST-THHHHHHHHHGGGCEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcC--CC-cHHHHHHHHhCCCCCeEEE
Confidence 568899999999875 6667777764 567999999987621 12111 11 000 01233322
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.... ...++...+.|++||.+++.
T Consensus 245 ----d~~G~-~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 245 ----DFVGA-QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp ----ESSCC-HHHHHHHHHHEEEEEEEEEC
T ss_pred ----ECCCC-HHHHHHHHHHHhcCCEEEEE
Confidence 22222 24788899999999998875
No 342
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=86.52 E-value=0.46 Score=41.79 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=28.8
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCC
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~ 144 (257)
.+++|++||=+|+|. |..+..+++. |..+|+++|.++.
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~ 249 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEV 249 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 467899999999865 5666666664 5448999998876
No 343
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=86.51 E-value=3.2 Score=31.62 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEECCCCCHHHHHHHHc-CCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHH-
Q 025148 97 KFFDDLKRKKLLSNESKALCIGARVGQEVEALKRV-GVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFE- 166 (257)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V- 166 (257)
..+.+... ..-.-.+-|||+|-|+|..-..|.+. +..+|+.+|-.-. .-.++.+|+.+. -+..
T Consensus 28 ~~L~~a~~-~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~t------L~~~~ 100 (174)
T 3iht_A 28 ACLEHAIA-QTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRET------LPATL 100 (174)
T ss_dssp HHHHHHHH-HTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHH------HHHHH
T ss_pred HHHHHHHH-HhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHH------HHHHH
Confidence 34444333 23344568999999999999999995 7779999996532 224455554432 1110
Q ss_pred --HH--HHhhccc----cHHH------HH-HHHHHhccCCcEEEEEec
Q 025148 167 --FS--NVFDHAL----YPDK------FV-MEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 167 --~~--~~l~h~~----~~~~------~l-~~~~r~LkpgG~l~i~~~ 199 (257)
+- .++-|.. ++++ .+ .-+..+|.|||+++-..|
T Consensus 101 ~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~p 148 (174)
T 3iht_A 101 ERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDR 148 (174)
T ss_dssp HHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred HhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 00 1344433 2221 12 346678999999887655
No 344
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=85.59 E-value=0.24 Score=42.72 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=50.3
Q ss_pred hhcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCC--------CCCchhHHH
Q 025148 105 KKLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPF--------DDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~V~ 167 (257)
...++++++||-.|++ .|..+..+++....+|+++|.+++.... ...|..+..+ ....+|+|+
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi 244 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII 244 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEE
Confidence 3456789999999983 3555555555433599999987651110 1112221110 112355544
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.++- ...+....+.|++||.+++.
T Consensus 245 ~~~G------~~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 245 EMLA------NVNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp ESCH------HHHHHHHHHHEEEEEEEEEC
T ss_pred ECCC------hHHHHHHHHhccCCCEEEEE
Confidence 3311 13567888999999998874
No 345
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=85.22 E-value=0.32 Score=41.50 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=51.4
Q ss_pred hcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCC--------CCCchhHHHH
Q 025148 106 KLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPF--------DDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~V~~ 168 (257)
..++++++||-+|+ |.|..+..+++....+|+++|.+++.... ...|..+..+ ....+|+|+.
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid 223 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFD 223 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEE
Confidence 35688999999995 33566666666444599999987651110 1111111110 1234666554
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
++- . ..++...+.|++||.+++.
T Consensus 224 ~~g----~--~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 224 SVG----K--DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp CCG----G--GGHHHHHHHEEEEEEEEEC
T ss_pred CCC----h--HHHHHHHHHhccCCEEEEE
Confidence 321 1 4577888999999998875
No 346
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=85.14 E-value=0.51 Score=40.72 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred CeEEEECCCCCHHHHHHHHcC--CCcEEEecCCCC----------CCcEEEecCCCCCC---CCCchhHHHH
Q 025148 112 SKALCIGARVGQEVEALKRVG--VSDSVGIDLVPY----------PPLVIEGDFHRQPF---DDETFDFEFS 168 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~----------~~~~~~~d~~~~~~---~~~~fD~V~~ 168 (257)
.+++|+-||.|.+...+.+.| ...|+++|+++. ...++.+|+.++.. +...+|+|+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~ 74 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEE
Confidence 589999999999999998877 346899999876 23467788877642 1114777644
No 347
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=84.79 E-value=1 Score=38.80 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=50.8
Q ss_pred CCCC------CeEEEECCCC-CHHH-HHHH-HcCCCc-EEEecCCCC---CC--------cEEEecCCCCCCC-----CC
Q 025148 108 LSNE------SKALCIGARV-GQEV-EALK-RVGVSD-SVGIDLVPY---PP--------LVIEGDFHRQPFD-----DE 161 (257)
Q Consensus 108 ~~~~------~~vLDiGcG~-G~~~-~~l~-~~~~~~-v~gvD~s~~---~~--------~~~~~d~~~~~~~-----~~ 161 (257)
++++ ++||-+|+|. |..+ ..++ +.-..+ |+++|.+++ .. ..+ |..+..+. ++
T Consensus 164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v--~~~~~~~~~i~~~~g 241 (357)
T 2b5w_A 164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV--DSRQTPVEDVPDVYE 241 (357)
T ss_dssp HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE--ETTTSCGGGHHHHSC
T ss_pred CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc--CCCccCHHHHHHhCC
Confidence 4677 9999999854 6666 7777 643345 999999875 21 111 32221111 11
Q ss_pred chhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 162 TFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.+|+|+-. ... ...+++..+.|++||.+++.
T Consensus 242 g~Dvvid~----~g~-~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 242 QMDFIYEA----TGF-PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp CEEEEEEC----SCC-HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEEC----CCC-hHHHHHHHHHHhcCCEEEEE
Confidence 35554432 222 24678889999999998875
No 348
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=84.78 E-value=0.61 Score=40.30 Aligned_cols=87 Identities=16% Similarity=0.048 Sum_probs=52.4
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC--------CcEEEecCCCCCC-------CCCchhHHH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP--------PLVIEGDFHRQPF-------DDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~--------~~~~~~d~~~~~~-------~~~~fD~V~ 167 (257)
...++++++||-+|+ |.|..+..+++....+|+++|.+++. .... .|..+..+ ..+.+|+|+
T Consensus 158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~-~~~~~~~~~~~~~~~~~~g~D~vi 236 (362)
T 2c0c_A 158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRP-INYKTEPVGTVLKQEYPEGVDVVY 236 (362)
T ss_dssp HTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTTSCHHHHHHHHCTTCEEEEE
T ss_pred hcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEE-EecCChhHHHHHHHhcCCCCCEEE
Confidence 345688999999993 45777777776534599999988641 1111 11111100 012355544
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
.. ... ..++.+.+.|+++|.+++.-
T Consensus 237 d~----~g~--~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 237 ES----VGG--AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp EC----SCT--HHHHHHHHHEEEEEEEEECC
T ss_pred EC----CCH--HHHHHHHHHHhcCCEEEEEe
Confidence 32 212 47788999999999987753
No 349
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=84.71 E-value=0.42 Score=40.89 Aligned_cols=87 Identities=16% Similarity=0.057 Sum_probs=51.0
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcE--------EEecCCCC-CCC-------CCchhHH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLV--------IEGDFHRQ-PFD-------DETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~--------~~~d~~~~-~~~-------~~~fD~V 166 (257)
...++++++||-+|| |.|..+..+++....+|+++|.+++.... ...|..+. .+. .+.+|+|
T Consensus 150 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~v 229 (345)
T 2j3h_A 150 VCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIY 229 (345)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEE
T ss_pred HhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEE
Confidence 345678999999998 34556556665433599999987541110 11122211 110 1235554
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.++ .. ..++...+.|++||.+++.
T Consensus 230 i~~~----g~--~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 230 FENV----GG--KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp EESS----CH--HHHHHHHTTEEEEEEEEEC
T ss_pred EECC----CH--HHHHHHHHHHhcCCEEEEE
Confidence 4332 11 4678889999999998874
No 350
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=84.25 E-value=0.19 Score=42.29 Aligned_cols=83 Identities=17% Similarity=0.062 Sum_probs=50.2
Q ss_pred CCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcEEE-------ecCCC-CCCCC--CchhHHHHHHhhccc
Q 025148 108 LSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLVIE-------GDFHR-QPFDD--ETFDFEFSNVFDHAL 175 (257)
Q Consensus 108 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~-------~d~~~-~~~~~--~~fD~V~~~~l~h~~ 175 (257)
++++++||-+|+ |.|..+..+++....+|+++|.+++...... .|..+ ..+.+ +.+|+|+. ..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-----~g 197 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-----VR 197 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-----CS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-----CC
Confidence 788999999998 3366666666643359999998766322110 11110 00000 23454443 22
Q ss_pred cHHHHHHHHHHhccCCcEEEEE
Q 025148 176 YPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 176 ~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ..++...+.|+++|.++..
T Consensus 198 ~--~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 198 G--KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp C--TTHHHHHTTEEEEEEEEEC
T ss_pred H--HHHHHHHHhhccCCEEEEE
Confidence 2 4678889999999998764
No 351
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=83.73 E-value=0.96 Score=38.76 Aligned_cols=58 Identities=17% Similarity=0.078 Sum_probs=40.5
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCCC--------CcEEEecCCCCCCCC-CchhHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPYP--------PLVIEGDFHRQPFDD-ETFDFEFS 168 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~--------~~~~~~d~~~~~~~~-~~fD~V~~ 168 (257)
+.+++|+.||.|.+...+.+.|...+.++|+++.. .....+|+.++...+ ..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEE
Confidence 46899999999999999998887678899998651 011256666553211 24787644
No 352
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=83.64 E-value=0.11 Score=44.63 Aligned_cols=85 Identities=13% Similarity=0.021 Sum_probs=50.3
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHcC--CCcEEEecCCCCCC---------cEEEecC-CCC--CCC-CCchhHHHHHH
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRVG--VSDSVGIDLVPYPP---------LVIEGDF-HRQ--PFD-DETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~gvD~s~~~~---------~~~~~d~-~~~--~~~-~~~fD~V~~~~ 170 (257)
.+ ++++||-+|+|. |..+..+++.. ..+|+++|.+++.. .++...- .+. ... ...+|+|+..+
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~ 246 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLV 246 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECC
Confidence 45 899999999964 56666666643 45899999886521 1111000 000 000 11355554321
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ...++...+.|++||.+++.
T Consensus 247 ----g~-~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 247 ----GT-EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp ----CC-HHHHHHHHHHEEEEEEEEEC
T ss_pred ----CC-hHHHHHHHHHhhcCCEEEEe
Confidence 11 24678889999999998764
No 353
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=83.40 E-value=0.52 Score=40.34 Aligned_cols=84 Identities=7% Similarity=0.020 Sum_probs=51.6
Q ss_pred cCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC--------CcEEEecCCCCCC--------CCCchhHHHH
Q 025148 107 LLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP--------PLVIEGDFHRQPF--------DDETFDFEFS 168 (257)
Q Consensus 107 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~--------~~~~~~d~~~~~~--------~~~~fD~V~~ 168 (257)
.++++++||-+|+ |.|..+..+++....+|+++|.+++. .... .|..+..+ ....+|+|+.
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~-~d~~~~~~~~~~~~~~~~~~~d~vi~ 241 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADET-VNYTHPDWPKEVRRLTGGKGADKVVD 241 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEE-EETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEE-EcCCcccHHHHHHHHhCCCCceEEEE
Confidence 4678899999998 45677767666433599999987652 1111 12221110 1124555544
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
++- ...++.+.+.|+++|.+++.
T Consensus 242 ~~g------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 242 HTG------ALYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp SSC------SSSHHHHHHHEEEEEEEEES
T ss_pred CCC------HHHHHHHHHhhccCCEEEEE
Confidence 321 14577888999999988764
No 354
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=83.03 E-value=0.46 Score=40.32 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=50.5
Q ss_pred cCCCCC-eEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC--------C-cEEEecCC--C--CCCCCCchhHHHHHH
Q 025148 107 LLSNES-KALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP--------P-LVIEGDFH--R--QPFDDETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~--------~-~~~~~d~~--~--~~~~~~~fD~V~~~~ 170 (257)
.++++. +||-+|+ |.|..+..+++...++|+++|.+++. . .++..+-. + .....+.+|+|+..+
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~ 224 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV 224 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECC
Confidence 456665 8999998 33666666766534589999988662 1 12211100 0 011223577765432
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
- . ..++...+.|++||.+++.
T Consensus 225 g----~--~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 225 G----G--RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp T----T--TTHHHHHHTEEEEEEEEEC
T ss_pred c----H--HHHHHHHHhhccCCEEEEE
Confidence 1 1 2567788999999998864
No 355
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=82.72 E-value=0.3 Score=41.54 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=51.7
Q ss_pred hcCCCCCeEEEECC-C-CCHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCCC--------CCCCchhHH
Q 025148 106 KLLSNESKALCIGA-R-VGQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQP--------FDDETFDFE 166 (257)
Q Consensus 106 ~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~~--------~~~~~fD~V 166 (257)
..++++++||-+|+ | .|..+..+++....+|+++|.+++.. .++ |..+.. .....+|+|
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~--~~~~~~~~~~~~~~~~~~g~Dvv 213 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETI--DYSHEDVAKRVLELTDGKKCPVV 213 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHTTTCCEEEE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE--eCCCccHHHHHHHHhCCCCceEE
Confidence 45688999999994 3 36666666664334999999876511 122 111111 111346665
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.++- . ..+....+.|++||.+++.-
T Consensus 214 id~~g----~--~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 214 YDGVG----Q--DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EESSC----G--GGHHHHHTTEEEEEEEEECC
T ss_pred EECCC----h--HHHHHHHHHhcCCCEEEEEe
Confidence 54321 1 35677889999999988763
No 356
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=82.65 E-value=0.26 Score=42.22 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=49.2
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCC-cEEEecCCCCCCcEE------EecCCCCCCC-------CCchhHHHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVS-DSVGIDLVPYPPLVI------EGDFHRQPFD-------DETFDFEFSNV 170 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~~------~~d~~~~~~~-------~~~fD~V~~~~ 170 (257)
..+ ++++||-+|+|. |..+..+++.... +|+++|.+++..... ..|..+..+. .+.+|+|+.
T Consensus 161 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid-- 237 (343)
T 2dq4_A 161 SGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLE-- 237 (343)
T ss_dssp TCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEE--
T ss_pred CCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEE--
Confidence 345 889999999854 5566666664344 899999886521111 1111110000 012333322
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.... ...+++..+.|+++|.+++.
T Consensus 238 --~~g~-~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 238 --FSGN-EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp --CSCC-HHHHHHHHHHEEEEEEEEEC
T ss_pred --CCCC-HHHHHHHHHHHhcCCEEEEE
Confidence 2222 25678889999999988764
No 357
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=82.54 E-value=0.44 Score=40.90 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=50.2
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCCC--------CCCchhHHHH
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQPF--------DDETFDFEFS 168 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~V~~ 168 (257)
..+ ++++||-+|+|. |..+..+++. |..+|+++|.+++.... ...|..+..+ ....+|+|+.
T Consensus 164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid 242 (348)
T 2d8a_A 164 GPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLE 242 (348)
T ss_dssp SCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 345 889999999954 5556666664 43389999988652110 0112211110 0113555433
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. .. ....++.+.+.|+++|.++..
T Consensus 243 ~----~g-~~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 243 F----SG-APKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp C----SC-CHHHHHHHHHHEEEEEEEEEC
T ss_pred C----CC-CHHHHHHHHHHHhcCCEEEEE
Confidence 2 11 125678889999999998765
No 358
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=81.29 E-value=0.1 Score=45.63 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=50.1
Q ss_pred CCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCC---------cEEEec---CCCC-----C-CCCCchhHHH
Q 025148 108 LSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPP---------LVIEGD---FHRQ-----P-FDDETFDFEF 167 (257)
Q Consensus 108 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~---------~~~~~d---~~~~-----~-~~~~~fD~V~ 167 (257)
+++|++||-+|+|. |..+..+++. |..+|+++|.+++.. .++..+ -.++ . .....+|+|+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvi 272 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 272 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEE
Confidence 67899999999764 5566666664 425999999886521 112111 0000 0 0111355544
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
-. ... ...+++..+.|++||.+++.
T Consensus 273 d~----~g~-~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 273 EA----TGD-SRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp EC----SSC-TTHHHHHHHHEEEEEEEEEC
T ss_pred EC----CCC-HHHHHHHHHHHhcCCEEEEE
Confidence 32 111 14678888999999998765
No 359
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=81.22 E-value=0.24 Score=42.57 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=50.7
Q ss_pred hcCCCCCeEEEECCCC--CHHHHHHHHcC-CCcEEEecCCCCCCcE-------EEecCCCCCC-------CC-CchhHHH
Q 025148 106 KLLSNESKALCIGARV--GQEVEALKRVG-VSDSVGIDLVPYPPLV-------IEGDFHRQPF-------DD-ETFDFEF 167 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~--G~~~~~l~~~~-~~~v~gvD~s~~~~~~-------~~~d~~~~~~-------~~-~~fD~V~ 167 (257)
..++++++||-.|+|. |..+..+++.. ..+|+++|.+++.... ...|..+... .+ +.+|+|+
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 245 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVI 245 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEE
Confidence 4567899999999983 44444555432 4589999988652110 1112211110 11 2455554
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.++- ....++...+.|+++|.+++.
T Consensus 246 ~~~g-----~~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 246 DLNN-----SEKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp ESCC-----CHHHHTTGGGGEEEEEEEEEC
T ss_pred ECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 4311 124678888999999998774
No 360
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=80.97 E-value=0.2 Score=42.90 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhccCCcEEEEEec
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
....+.++.++|+|||.+++...
T Consensus 85 ~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 85 AKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEEEcC
Confidence 34677889999999999999874
No 361
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=80.74 E-value=0.83 Score=38.58 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=49.3
Q ss_pred eEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC---------CcEEEecCCC--CCCCCCchhHHHHHHhhccccHHH
Q 025148 113 KALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP---------PLVIEGDFHR--QPFDDETFDFEFSNVFDHALYPDK 179 (257)
Q Consensus 113 ~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~---------~~~~~~d~~~--~~~~~~~fD~V~~~~l~h~~~~~~ 179 (257)
+||=+|+ |.|..+..+++.-..+|+++|.+++. ..++...-.+ .....+.+|+|+-.+ .. .
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~----g~--~ 222 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTV----GD--K 222 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESS----CH--H
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECC----Cc--H
Confidence 4999997 34677777777544599999988762 1122111111 112234577765432 21 3
Q ss_pred HHHHHHHhccCCcEEEEE
Q 025148 180 FVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~ 197 (257)
.+++..+.|+++|.+++.
T Consensus 223 ~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 223 VLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp HHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCEEEEE
Confidence 788899999999998875
No 362
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=80.47 E-value=1.1 Score=37.57 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEE-EecCCCCCCCCCchhHHHHH-----Hhhc-c--c
Q 025148 118 GARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVI-EGDFHRQPFDDETFDFEFSN-----VFDH-A--L 175 (257)
Q Consensus 118 GcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~-~~d~~~~~~~~~~fD~V~~~-----~l~h-~--~ 175 (257)
.++.|.....+.+..+..|.-||..-. ...+. ..|+...+ ..+.+|+|+++ .-+| - .
T Consensus 149 ~~~~~~~~~~~~k~~g~~vl~v~~~~~~p~k~v~wi~Pi~GAt~~~~lDfg~p~-~~~k~DvV~SDMApn~sGh~yqQC~ 227 (320)
T 2hwk_A 149 EHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEATFRARLDLGIPG-DVPKYDIIFVNVRTPYKYHHYQQCE 227 (320)
T ss_dssp CCCCCCCHHHHHTSSCSEEEEEESCCCCTTSEEEEEESSTTCSEECCGGGCSCT-TSCCEEEEEEECCCCCCSCHHHHHH
T ss_pred ccCCCCHHHHHhhCCCcEEEEEecccccCCceeEeeccCCCceeecccccCCcc-ccCcCCEEEEcCCCCCCCccccccc
Confidence 467777777777765557777752211 12233 44554433 22669999885 3333 1 2
Q ss_pred cH----HHHHHHHHHhccCCcEEEEEec
Q 025148 176 YP----DKFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 176 ~~----~~~l~~~~r~LkpgG~l~i~~~ 199 (257)
|. .-++....++|+|||.+++-+.
T Consensus 228 DHarii~Lal~fA~~vLkPGGtfV~Kvy 255 (320)
T 2hwk_A 228 DHAIKLSMLTKKACLHLNPGGTCVSIGY 255 (320)
T ss_dssp HHHHHHHHTHHHHGGGEEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 22 2345778899999999999874
No 363
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=79.73 E-value=0.69 Score=39.16 Aligned_cols=88 Identities=13% Similarity=-0.063 Sum_probs=50.4
Q ss_pred HhhcCCCCCeEEEEC-CCC-CHHHHHHHHcCCCcEEEecCCCC-------CC-cEEEecCCC-CCCCCCchhHHHHHHhh
Q 025148 104 RKKLLSNESKALCIG-ARV-GQEVEALKRVGVSDSVGIDLVPY-------PP-LVIEGDFHR-QPFDDETFDFEFSNVFD 172 (257)
Q Consensus 104 ~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~v~gvD~s~~-------~~-~~~~~d~~~-~~~~~~~fD~V~~~~l~ 172 (257)
....+++|++||=+| +|. |..+..+++....+|++++.++. .. .++...-.+ ..-.-..+|+|+-.+
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~-- 223 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLV-- 223 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESS--
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECC--
Confidence 455678899999997 554 67777777754458998873322 11 122111111 000002466654421
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ..+....+.|++||.++..
T Consensus 224 --g~--~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 224 --GG--DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp --CH--HHHHHHGGGEEEEEEEEEC
T ss_pred --Cc--HHHHHHHHhccCCCEEEEe
Confidence 11 2337788999999998875
No 364
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=79.61 E-value=0.92 Score=38.46 Aligned_cols=85 Identities=20% Similarity=0.141 Sum_probs=51.0
Q ss_pred cCCCCC-eEEEECC-C-CCHHHHHHHHcCCCcEEEecCCCCCC---------cEEEe-cC--CC-CCCCCCchhHHHHHH
Q 025148 107 LLSNES-KALCIGA-R-VGQEVEALKRVGVSDSVGIDLVPYPP---------LVIEG-DF--HR-QPFDDETFDFEFSNV 170 (257)
Q Consensus 107 ~~~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~-d~--~~-~~~~~~~fD~V~~~~ 170 (257)
.+++++ +||-+|+ | .|..+..+++....+|+++|.+++.. .++.. +. .. .....+.+|+|+..+
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~ 225 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPV 225 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECC
Confidence 356665 8999998 3 35666666664234899999886621 12211 10 00 112234577765432
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ..+.+..+.|++||.+++.
T Consensus 226 ----g~--~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 226 ----GG--KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp ----CT--HHHHHHHTTEEEEEEEEEC
T ss_pred ----cH--HHHHHHHHhhcCCCEEEEE
Confidence 12 3678888999999998864
No 365
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=79.16 E-value=3.1 Score=35.16 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=71.0
Q ss_pred CeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC---------CCcEEEecCCCCCCCC-CchhHHHHH----Hh------
Q 025148 112 SKALCIGARVGQEVEALKRVGVSDSVGIDLVPY---------PPLVIEGDFHRQPFDD-ETFDFEFSN----VF------ 171 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~---------~~~~~~~d~~~~~~~~-~~fD~V~~~----~l------ 171 (257)
.+|||+=||-|.+...+.+.|..-+.++|+++. +..++.+|+.++...+ ..+|+++.. .+
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~ 80 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSL 80 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCc
Confidence 379999999999999998888766789999987 3457788888774221 247776432 11
Q ss_pred hccccHH-HHHH---HHHHhccCCcEEEEE-eccCCCcCcCCCCCcCChhHHHHhcccCCcEEEE-Ee--cCCCCc
Q 025148 172 DHALYPD-KFVM---EIERTLKPGGVCVLH-VALSKRADKYSANDLFSVKPLVKLFKRSEMVRVR-KV--DGFGLD 239 (257)
Q Consensus 172 ~h~~~~~-~~l~---~~~r~LkpgG~l~i~-~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~-~~--~gf~~~ 239 (257)
....|+. .++. ++.+.++|. +++++ |+..-. .+.--....+.+.|.+.|+.... .+ ..||+-
T Consensus 81 ~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~ENV~gl~~-----~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvP 150 (331)
T 3ubt_Y 81 RGIDDPRGKLFYEYIRILKQKKPI-FFLAENVKGMMA-----QRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVA 150 (331)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHCCS-EEEEEECCGGGG-----CTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCS
T ss_pred cCCCCchhHHHHHHHHHHhccCCe-EEEeeeeccccc-----ccccchhhhhhhhhccCCcEEEEEecccccCCCC
Confidence 1123443 3333 344556885 44443 432110 00001245566777777764322 22 367763
No 366
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=79.08 E-value=1.4 Score=37.47 Aligned_cols=91 Identities=12% Similarity=-0.038 Sum_probs=51.1
Q ss_pred HHhhcCCCCCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCCCCCcE-------EEecCCCCCCC--------CCchhH
Q 025148 103 KRKKLLSNESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVPYPPLV-------IEGDFHRQPFD--------DETFDF 165 (257)
Q Consensus 103 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~-------~~~d~~~~~~~--------~~~fD~ 165 (257)
.......++++||=.|+|. |..+..+++. +...++++|.+++.... ...|..+.... ...+|+
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~ 232 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQL 232 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEE
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccc
Confidence 3455568899999999875 4445555554 65567899988762111 11111111100 011222
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
| ++... -...++...+.|++||.+++.-
T Consensus 233 v----~d~~G-~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 233 I----LETAG-VPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp E----EECSC-SHHHHHHHHHHCCTTCEEEECC
T ss_pred c----ccccc-ccchhhhhhheecCCeEEEEEe
Confidence 2 22111 2357788889999999988753
No 367
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=79.02 E-value=1.2 Score=37.87 Aligned_cols=86 Identities=14% Similarity=-0.006 Sum_probs=49.7
Q ss_pred hhcCCCCCeEEEECCCCC-HHHHHHHH-cCCCcEEEecCCCCCC---------cEEEecCCCCCCCCCchhHHHH--H--
Q 025148 105 KKLLSNESKALCIGARVG-QEVEALKR-VGVSDSVGIDLVPYPP---------LVIEGDFHRQPFDDETFDFEFS--N-- 169 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG~G-~~~~~l~~-~~~~~v~gvD~s~~~~---------~~~~~d~~~~~~~~~~fD~V~~--~-- 169 (257)
...+++|++||=+|+|.+ ..+..+++ .+..+|+++|.+++.. .++ |..+. +..+-|.. +
T Consensus 158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i--~~~~~----~~~~~v~~~t~g~ 231 (348)
T 4eez_A 158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTI--NSGDV----NPVDEIKKITGGL 231 (348)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEE--EC-CC----CHHHHHHHHTTSS
T ss_pred ccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEE--eCCCC----CHHHHhhhhcCCC
Confidence 445688999999999863 33444444 5667999999987621 122 11111 11122211 0
Q ss_pred ----HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 ----VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ----~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+++.. --...+....+.|+++|.+++.
T Consensus 232 g~d~~~~~~-~~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 232 GVQSAIVCA-VARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp CEEEEEECC-SCHHHHHHHHHTEEEEEEEEEC
T ss_pred CceEEEEec-cCcchhheeheeecCCceEEEE
Confidence 01111 1235778889999999998775
No 368
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=78.77 E-value=1.5 Score=37.51 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=47.4
Q ss_pred CCCeEEEEC-CCC-CHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCC------CCCCCchhHHHHHHhhcc
Q 025148 110 NESKALCIG-ARV-GQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQ------PFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 110 ~~~~vLDiG-cG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~------~~~~~~fD~V~~~~l~h~ 174 (257)
++++||-+| +|. |..+..+++....+|+++|.+++.... ...|..+. ....+.+|+|+.. .
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~----~ 225 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCT----F 225 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEES----S
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEEC----C
Confidence 789999994 443 566666666534599999987652110 01111110 0011235544332 1
Q ss_pred ccHHHHHHHHHHhccCCcEEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.....++.+.+.|+++|.++..
T Consensus 226 -g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 226 -NTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEES
T ss_pred -CchHHHHHHHHHhccCCEEEEE
Confidence 1235678889999999998764
No 369
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=78.44 E-value=0.74 Score=41.15 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=28.4
Q ss_pred hcCCCCCeEEEECC-C-CCHHHHHHHHcCCCcEEEecCCCC
Q 025148 106 KLLSNESKALCIGA-R-VGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 106 ~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..+++|++||=+|+ | .|..+..+++....++++++.+++
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~ 264 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQ 264 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHH
Confidence 35688999999998 3 366666777654458999887655
No 370
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=78.34 E-value=0.63 Score=40.06 Aligned_cols=87 Identities=10% Similarity=-0.005 Sum_probs=49.7
Q ss_pred hhcCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCC--------CCCCchhHHH
Q 025148 105 KKLLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQP--------FDDETFDFEF 167 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V~ 167 (257)
...++++++||-.|++ .|..+..++.....+|+++|.+++.... ...|..+.. .....+|+++
T Consensus 157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 236 (354)
T 2j8z_A 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLIL 236 (354)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred hcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEE
Confidence 3446788999999953 3555555555433599999987652110 111222111 0112355554
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.++- . ..+++..+.|++||.+++.
T Consensus 237 ~~~G----~--~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 237 DCIG----G--SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp ESSC----G--GGHHHHHHHEEEEEEEEEC
T ss_pred ECCC----c--hHHHHHHHhccCCCEEEEE
Confidence 3321 1 2567788999999998875
No 371
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=77.89 E-value=0.88 Score=38.67 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=50.9
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCC--------CcEEEecCCCCCC--------CCCchhHH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYP--------PLVIEGDFHRQPF--------DDETFDFE 166 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~--------~~~~~~d~~~~~~--------~~~~fD~V 166 (257)
...++++.+||-.|+ |.|..+..++.....+|+++|.+++. ... ..|..+..+ ....+|+|
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~i~~~~~~~~~d~v 218 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHH-TINYSTQDFAEVVREITGGKGVDVV 218 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSE-EEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCE-EEECCCHHHHHHHHHHhCCCCCeEE
Confidence 345678999999996 45666666665433599999988641 111 112221110 01234554
Q ss_pred HHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 167 FSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 167 ~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.++ .. ..++.+.+.|++||.+++.
T Consensus 219 i~~~----g~--~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 219 YDSI----GK--DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp EECS----CT--TTHHHHHHTEEEEEEEEEC
T ss_pred EECC----cH--HHHHHHHHhhccCCEEEEE
Confidence 4321 11 4678888999999998765
No 372
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=77.29 E-value=1.1 Score=38.45 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=50.4
Q ss_pred HhhcCCCC--CeEEEECCC--CCHHHHHHHHcCCC-cEEEecCCCCCCcE--------EEecCCCCCC-------CCCch
Q 025148 104 RKKLLSNE--SKALCIGAR--VGQEVEALKRVGVS-DSVGIDLVPYPPLV--------IEGDFHRQPF-------DDETF 163 (257)
Q Consensus 104 ~~~~~~~~--~~vLDiGcG--~G~~~~~l~~~~~~-~v~gvD~s~~~~~~--------~~~d~~~~~~-------~~~~f 163 (257)
....++++ ++||-.|++ .|..+..++..... +|+++|.+++.... ...|..+..+ ..+.+
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~ 231 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGV 231 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCC
Confidence 34556788 999999983 34555555554334 99999987541110 1112221110 00134
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+++.++ . ...++...+.|++||.+++.
T Consensus 232 d~vi~~~----G--~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 232 DVYFDNV----G--GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp EEEEESC----C--HHHHHHHHHTEEEEEEEEEC
T ss_pred CEEEECC----C--HHHHHHHHHHhccCcEEEEE
Confidence 4443321 1 15778889999999998864
No 373
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=77.19 E-value=0.6 Score=39.58 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=50.0
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHH-cCCCcEEEecCCCCC--------CcEEEecCCCCCC--------CCCchhH
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKR-VGVSDSVGIDLVPYP--------PLVIEGDFHRQPF--------DDETFDF 165 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~v~gvD~s~~~--------~~~~~~d~~~~~~--------~~~~fD~ 165 (257)
...++++++||-.|+ |.|..+..++. .|. +|+++|.+++. ... ..|..+..+ ....+|+
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~D~ 212 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQ-VINYREEDLVERLKEITGGKKVRV 212 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSE-EEETTTSCHHHHHHHHTTTCCEEE
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCE-EEECCCccHHHHHHHHhCCCCceE
Confidence 345678999999995 33555555554 354 99999987641 111 112221110 1123555
Q ss_pred HHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 166 EFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 166 V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
++.++ . ...++.+.+.|++||.+++.
T Consensus 213 vi~~~----g--~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 213 VYDSV----G--RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp EEECS----C--GGGHHHHHHTEEEEEEEEEC
T ss_pred EEECC----c--hHHHHHHHHHhcCCCEEEEE
Confidence 54432 1 24678889999999998765
No 374
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=77.19 E-value=1.1 Score=38.73 Aligned_cols=77 Identities=18% Similarity=0.079 Sum_probs=46.9
Q ss_pred CCeEEEECCCC-CHHHHHHHHc-CCCcEEEecCCC---CC--------CcEEEecCCCCCCCC------CchhHHHHHHh
Q 025148 111 ESKALCIGARV-GQEVEALKRV-GVSDSVGIDLVP---YP--------PLVIEGDFHRQPFDD------ETFDFEFSNVF 171 (257)
Q Consensus 111 ~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~---~~--------~~~~~~d~~~~~~~~------~~fD~V~~~~l 171 (257)
+++||-+|+|. |..+..+++. |. +|+++|.++ +. ...+ | .+ .+.+ +.+|+|+..+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v--~-~~-~~~~~~~~~~~~~d~vid~~- 254 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY--N-SS-NGYDKLKDSVGKFDVIIDAT- 254 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE--E-CT-TCSHHHHHHHCCEEEEEECC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee--c-hH-HHHHHHHHhCCCCCEEEECC-
Confidence 89999999843 4444455543 55 999999987 41 2222 3 22 2211 2356654431
Q ss_pred hccccHHHHH-HHHHHhccCCcEEEEE
Q 025148 172 DHALYPDKFV-MEIERTLKPGGVCVLH 197 (257)
Q Consensus 172 ~h~~~~~~~l-~~~~r~LkpgG~l~i~ 197 (257)
..+ ..+ +...+.|+++|.+++.
T Consensus 255 ---g~~-~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 255 ---GAD-VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp ---CCC-THHHHHHGGGEEEEEEEEEC
T ss_pred ---CCh-HHHHHHHHHHHhcCCEEEEE
Confidence 111 245 7888999999998765
No 375
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=77.18 E-value=1.9 Score=31.53 Aligned_cols=81 Identities=12% Similarity=-0.010 Sum_probs=46.2
Q ss_pred CCeEEEECCCCCHHHHHHH----HcCCCcEEEecCCCC--------CCcEEEecCCCCCC----CCCchhHHHHHHhhcc
Q 025148 111 ESKALCIGARVGQEVEALK----RVGVSDSVGIDLVPY--------PPLVIEGDFHRQPF----DDETFDFEFSNVFDHA 174 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~----~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~----~~~~fD~V~~~~l~h~ 174 (257)
.++|+=+|||. ++..++ +.+ .+|+++|.+++ ...++.+|..+... .-...|+|+.. +
T Consensus 7 ~~~viIiG~G~--~G~~la~~L~~~g-~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~----~ 79 (140)
T 3fwz_A 7 CNHALLVGYGR--VGSLLGEKLLASD-IPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILT----I 79 (140)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEEC----C
T ss_pred CCCEEEECcCH--HHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEE----C
Confidence 35789999864 444433 335 49999999876 45566777654321 11234544321 1
Q ss_pred ccHH--HHHHHHHHhccCCcEEEEEe
Q 025148 175 LYPD--KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 175 ~~~~--~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.. ..+....+.+.|+..++...
T Consensus 80 ~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 80 PNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp SCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred CChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 2222 22344567778888877765
No 376
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=76.24 E-value=0.59 Score=40.25 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=50.8
Q ss_pred hhcCCCCCeEEEECC-C-CCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCCC-------CCchhHHHH
Q 025148 105 KKLLSNESKALCIGA-R-VGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPFD-------DETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~~-------~~~fD~V~~ 168 (257)
...++++++||-+|+ | .|..+..+++....+|+++|.+++.... ...|..+..+. .+.+|+|+.
T Consensus 162 ~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid 241 (353)
T 4dup_A 162 MAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILD 241 (353)
T ss_dssp TTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEE
T ss_pred hcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEE
Confidence 445688999999954 3 3666666666544599999988651110 01111111100 123555543
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
++ .. ..++...+.|++||.+++..
T Consensus 242 ~~----g~--~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 242 MI----GA--AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp SC----CG--GGHHHHHHTEEEEEEEEECC
T ss_pred CC----CH--HHHHHHHHHhccCCEEEEEE
Confidence 21 11 25677889999999988753
No 377
>3kpe_B Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus}
Probab=74.96 E-value=3 Score=23.43 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=26.7
Q ss_pred CCCCchhHHHHHHhhccccHHHHHHHHHHhc
Q 025148 158 FDDETFDFEFSNVFDHALYPDKFVMEIERTL 188 (257)
Q Consensus 158 ~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~L 188 (257)
||+..||+.+..|.+-+.+...+++.--++|
T Consensus 2 FP~DqFdvai~qV~e~InqS~~~i~~Sd~lL 32 (39)
T 3kpe_B 2 FPSDEFDASISQVNEKINQSLAFIRKSDELL 32 (39)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999988888888777766
No 378
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}
Probab=72.39 E-value=0.69 Score=34.35 Aligned_cols=40 Identities=15% Similarity=0.358 Sum_probs=30.6
Q ss_pred CCCCCchhHHHH-H-Hh-hccccHHHHHHHHHHhccCCcEEEE
Q 025148 157 PFDDETFDFEFS-N-VF-DHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 157 ~~~~~~fD~V~~-~-~l-~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
.+++++||.|+- . .= .+..-+..+++.+.+.|||||.|.-
T Consensus 54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 467888998744 2 11 4455678999999999999999986
No 379
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=72.37 E-value=1.5 Score=38.97 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=28.0
Q ss_pred hcCCCCCeEEEECC-C-CCHHHHHHHHcCCCcEEEecCCCC
Q 025148 106 KLLSNESKALCIGA-R-VGQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 106 ~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
..+++|++||-.|+ | .|..+..+++....++++++.+++
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~ 256 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQ 256 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45688999999997 3 256666666654458999987654
No 380
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=70.18 E-value=1.2 Score=38.03 Aligned_cols=86 Identities=12% Similarity=0.039 Sum_probs=50.6
Q ss_pred HhhcCCCCCeEEEECC-C-CCHHHHHHHHcCCCcEEEecCCCC--------CCcEEEecCCCCC------CCCCchhHHH
Q 025148 104 RKKLLSNESKALCIGA-R-VGQEVEALKRVGVSDSVGIDLVPY--------PPLVIEGDFHRQP------FDDETFDFEF 167 (257)
Q Consensus 104 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~--------~~~~~~~d~~~~~------~~~~~fD~V~ 167 (257)
....++++++||-+|+ | .|..+..+++....+|+++ .+++ ....+. +..+.. .....+|+|+
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~vi 221 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDLVY 221 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEEEE
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceEEE
Confidence 3455688999999995 3 3666666776544599998 6644 122211 111100 0112355544
Q ss_pred HHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 168 SNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 168 ~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
.. ... ..+....+.|+++|.+++.
T Consensus 222 d~----~g~--~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 222 DT----LGG--PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp ES----SCT--HHHHHHHHHEEEEEEEEES
T ss_pred EC----CCc--HHHHHHHHHHhcCCeEEEE
Confidence 32 221 4678888999999998875
No 381
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=69.50 E-value=3 Score=31.85 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=46.0
Q ss_pred CCCeEEEECCCCCHHHHH----HHHc-CCCcEEEecCCCC--------CCcEEEecCCCCC----C-CCCchhHHHHHHh
Q 025148 110 NESKALCIGARVGQEVEA----LKRV-GVSDSVGIDLVPY--------PPLVIEGDFHRQP----F-DDETFDFEFSNVF 171 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~----l~~~-~~~~v~gvD~s~~--------~~~~~~~d~~~~~----~-~~~~fD~V~~~~l 171 (257)
.+++|+=+||| ..+.. |.+. + .+|+++|.+++ ...++.+|..+.. . .-+.+|+|+..+-
T Consensus 38 ~~~~v~IiG~G--~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 38 GHAQVLILGMG--RIGTGAYDELRARYG-KISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp TTCSEEEECCS--HHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred CCCcEEEECCC--HHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence 35689999986 44433 3344 5 48999999865 3455666654421 1 1234676544211
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ......+-...+.+.|++.++..+
T Consensus 115 ~--~~~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 115 H--HQGNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp S--HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred C--hHHHHHHHHHHHHHCCCCEEEEEE
Confidence 0 001122334556667777777755
No 382
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=68.91 E-value=8.5 Score=33.69 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCeEEEECCCCCHHHHHHHHc--------CCCcEEEecCCCC
Q 025148 111 ESKALCIGARVGQEVEALKRV--------GVSDSVGIDLVPY 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD~s~~ 144 (257)
.-.|+|+|+|+|.++.-+.+. ...+++-||+|+.
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~ 122 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 122 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHH
Confidence 347999999999998766431 2347899999974
No 383
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=68.41 E-value=5.7 Score=33.36 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=43.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHcCCCc--EEEecCCCC----------CCcEEEecCCCCCCCC----CchhHHHH
Q 025148 109 SNESKALCIGARVGQEVEALKRVGVSD--SVGIDLVPY----------PPLVIEGDFHRQPFDD----ETFDFEFS 168 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~gvD~s~~----------~~~~~~~d~~~~~~~~----~~fD~V~~ 168 (257)
....+++|+=||.|.+...+.+.|..- |.++|+++. ...+..+|+.++...+ ..+|+++.
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~g 89 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIG 89 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcccCCcCEEEe
Confidence 345689999999999999998877533 589999866 2346788888764211 24787643
No 384
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=65.01 E-value=5.2 Score=34.21 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=40.5
Q ss_pred CeEEEECCCCCHHHHHHHHcCC--CcEEEecCCCC----------CCcEEEecCCCCCC---CCCchhHHH
Q 025148 112 SKALCIGARVGQEVEALKRVGV--SDSVGIDLVPY----------PPLVIEGDFHRQPF---DDETFDFEF 167 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~----------~~~~~~~d~~~~~~---~~~~fD~V~ 167 (257)
-+++|+-||.|.+...+.+.|. .-|.++|+++. ...+..+|+.++.. +...+|+++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ 74 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTIL 74 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEE
Confidence 4799999999999999988764 35789999876 23456777776642 222467764
No 385
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=64.24 E-value=11 Score=32.01 Aligned_cols=85 Identities=21% Similarity=0.190 Sum_probs=46.0
Q ss_pred hcCCCCCeEEEECC--CCCHHHHHHHHc-CCCcEEE-ecCCCC------------CCcEEEe------cCCCCCCCCCch
Q 025148 106 KLLSNESKALCIGA--RVGQEVEALKRV-GVSDSVG-IDLVPY------------PPLVIEG------DFHRQPFDDETF 163 (257)
Q Consensus 106 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~g-vD~s~~------------~~~~~~~------d~~~~~~~~~~f 163 (257)
..+++|++||-+|+ |.|..+..+++. |. ++++ ++.++. ...++.. ++.+..-....+
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~ 241 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQP 241 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCC
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCc
Confidence 45688999999997 346677777764 54 5554 444332 1112221 111111000136
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+|+-.+ .. ....+..+.|++||.+++.
T Consensus 242 Dvvid~~----g~--~~~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 242 RLALNCV----GG--KSSTELLRQLARGGTMVTY 269 (357)
T ss_dssp SEEEESS----CH--HHHHHHHTTSCTTCEEEEC
T ss_pred eEEEECC----Cc--HHHHHHHHhhCCCCEEEEE
Confidence 7654421 11 1224577999999998875
No 386
>1g2c_B Fusion protein (F); membrane fusion, pneumovirus, HRSV, viral protein; 2.30A {Human respiratory syncytial virus} SCOP: h.3.2.1
Probab=63.97 E-value=3.9 Score=23.46 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=29.2
Q ss_pred CCCCCCCchhHHHHHHhhccccHHHHHHHHHHhcc
Q 025148 155 RQPFDDETFDFEFSNVFDHALYPDKFVMEIERTLK 189 (257)
Q Consensus 155 ~~~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~Lk 189 (257)
.+.||+..||+.+..|++-+.....+++.--+.|-
T Consensus 4 Pl~FP~DqFdvai~qV~esI~qS~~~i~~Sd~lL~ 38 (43)
T 1g2c_B 4 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLH 38 (43)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688899999999999988888888887777765
No 387
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=62.15 E-value=4.1 Score=35.12 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=47.5
Q ss_pred CCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCCCCC-------CCCchhHHHHHH
Q 025148 109 SNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHRQPF-------DDETFDFEFSNV 170 (257)
Q Consensus 109 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~~~~-------~~~~fD~V~~~~ 170 (257)
+++.+||=+|++ .|..+..+++....+|+++. +++.. .++ |..+..+ .++.+|+|+-
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi--~~~~~~~~~~v~~~t~g~~d~v~d-- 237 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVF--DYRAPNLAQTIRTYTKNNLRYALD-- 237 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEE--ETTSTTHHHHHHHHTTTCCCEEEE--
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEE--ECCCchHHHHHHHHccCCccEEEE--
Confidence 788999999984 57777777775445898885 55421 122 1111110 0122444432
Q ss_pred hhccccHHHHHHHHHHhc-cCCcEEEEE
Q 025148 171 FDHALYPDKFVMEIERTL-KPGGVCVLH 197 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~L-kpgG~l~i~ 197 (257)
.... ...++...+.| ++||.++..
T Consensus 238 --~~g~-~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 238 --CITN-VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp --SSCS-HHHHHHHHHHSCTTCEEEEES
T ss_pred --CCCc-hHHHHHHHHHhhcCCCEEEEE
Confidence 2222 24677788888 699998864
No 388
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=60.39 E-value=12 Score=33.34 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=26.3
Q ss_pred CCeEEEECCCCCHHHHHHHH----cC--CCcEEEecCCCC
Q 025148 111 ESKALCIGARVGQEVEALKR----VG--VSDSVGIDLVPY 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~----~~--~~~v~gvD~s~~ 144 (257)
...|+|+|+|+|.++.-+.+ .+ ..+++-||+|+.
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~ 177 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGE 177 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSS
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHH
Confidence 36999999999998876643 22 237999999976
No 389
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=60.18 E-value=2.1 Score=35.51 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=27.2
Q ss_pred CchhHHHHH-----HhhccccHH-------HHHHHHHHhccCCcEEEEEe
Q 025148 161 ETFDFEFSN-----VFDHALYPD-------KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 161 ~~fD~V~~~-----~l~h~~~~~-------~~l~~~~r~LkpgG~l~i~~ 198 (257)
+.||+|+.| -.||..+-+ .+-....+.|+|||.+++..
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~a 259 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRA 259 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 789999886 345554322 22366778999999999875
No 390
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=58.84 E-value=7.5 Score=33.45 Aligned_cols=85 Identities=16% Similarity=0.096 Sum_probs=51.6
Q ss_pred cCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCCC-C-CCCCCchhHHHHHHhhcc
Q 025148 107 LLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFHR-Q-PFDDETFDFEFSNVFDHA 174 (257)
Q Consensus 107 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~~-~-~~~~~~fD~V~~~~l~h~ 174 (257)
.+++|++||-+|+|. |..+..+++....+|+++|.+++.. .++...-.+ . ... +.+|+|+..+-
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~-~g~Dvvid~~g--- 266 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHL-KSFDFILNTVA--- 266 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTT-TCEEEEEECCS---
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhh-cCCCEEEECCC---
Confidence 467899999999875 6666677765445899999887621 111111000 0 011 34666544211
Q ss_pred ccHHHHHHHHHHhccCCcEEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ...+++..+.|+++|.++..
T Consensus 267 -~-~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 267 -A-PHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp -S-CCCHHHHHTTEEEEEEEEEC
T ss_pred -C-HHHHHHHHHHhccCCEEEEe
Confidence 1 12467788999999998764
No 391
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}
Probab=58.72 E-value=2.1 Score=36.57 Aligned_cols=85 Identities=19% Similarity=0.106 Sum_probs=45.0
Q ss_pred hhcCCCCCeEEEECCC--CCHHHHHHHHc-CCCcEEEecCCCCCC--------cEEEecCCCC-----CCCCCchhHHHH
Q 025148 105 KKLLSNESKALCIGAR--VGQEVEALKRV-GVSDSVGIDLVPYPP--------LVIEGDFHRQ-----PFDDETFDFEFS 168 (257)
Q Consensus 105 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~-~~~~v~gvD~s~~~~--------~~~~~d~~~~-----~~~~~~fD~V~~ 168 (257)
...+++|++||=.|++ .|..+..+++. +..+|++++ ++... .++. .-.+. ....+.+|+|+-
T Consensus 137 ~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~~ga~~~~~-~~~~~~~~~~~~~~~g~Dvv~d 214 (349)
T 4a27_A 137 VANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIKDSVTHLFD-RNADYVQEVKRISAEGVDIVLD 214 (349)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHGGGSSEEEE-TTSCHHHHHHHHCTTCEEEEEE
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHHcCCcEEEc-CCccHHHHHHHhcCCCceEEEE
Confidence 4456889999999984 25666666664 556899987 33311 1111 10000 001123555443
Q ss_pred HHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 169 NVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 169 ~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ... ..++...+.|++||.+++.
T Consensus 215 ~----~g~--~~~~~~~~~l~~~G~~v~~ 237 (349)
T 4a27_A 215 C----LCG--DNTGKGLSLLKPLGTYILY 237 (349)
T ss_dssp E----CC---------CTTEEEEEEEEEE
T ss_pred C----CCc--hhHHHHHHHhhcCCEEEEE
Confidence 2 221 2346778999999999875
No 392
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=58.67 E-value=12 Score=32.57 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=47.9
Q ss_pred CCCCeEEEECCCCCH-HHHHHHHcCCCcE-EEecCCCCC---------CcEEEecCCCCCCCCCchhHHHHHHhhccccH
Q 025148 109 SNESKALCIGARVGQ-EVEALKRVGVSDS-VGIDLVPYP---------PLVIEGDFHRQPFDDETFDFEFSNVFDHALYP 177 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~-~~~~l~~~~~~~v-~gvD~s~~~---------~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~ 177 (257)
..|.+|+-.|+|... ........+...+ ..+|.++.. +.+..-+ . +.+...|.|+-..-.+ .
T Consensus 317 ~~gk~v~~yGa~~~g~~l~~~~~~~~~~i~~~~D~~~~k~g~~~~g~~ipi~~p~--~--~~~~~~d~vl~~~~~~---~ 389 (416)
T 4e2x_A 317 AEGRSVVGYGATAKSATVTNFCGIGPDLVHSVYDTTPDKQNRLTPGAHIPVRPAS--A--FSDPYPDYALLFAWNH---A 389 (416)
T ss_dssp HTTCCEEEECCCSHHHHHHHHHTCCTTTSCCEEESCGGGTTEECTTTCCEEEEGG--G--CCSSCCSEEEESCGGG---H
T ss_pred HcCCeEEEEccccHHHHHHHhcCCCcceeeEEEeCCccccCccCCCCCCcCCCHH--H--HhhcCCCEEEEecchh---H
Confidence 457899999998633 3322333332123 447887661 2222211 1 2234567643211111 4
Q ss_pred HHHHHHHHHhccCCcEEEEEecc
Q 025148 178 DKFVMEIERTLKPGGVCVLHVAL 200 (257)
Q Consensus 178 ~~~l~~~~r~LkpgG~l~i~~~~ 200 (257)
+++++++...+..||.+++-+|.
T Consensus 390 ~ei~~~~~~~~~~g~~~~~~~p~ 412 (416)
T 4e2x_A 390 EEIMAKEQEFHQAGGRWILYVPE 412 (416)
T ss_dssp HHHHHHCHHHHHTTCEEEECSSS
T ss_pred HHHHHHHHHHHhcCCEEEEECCc
Confidence 56778888888999999997764
No 393
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=58.54 E-value=9.3 Score=32.54 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHcCC--CcE-EEecCCCC---------CCcEEEecCCCCCC---CCCchhHHHHH----H
Q 025148 110 NESKALCIGARVGQEVEALKRVGV--SDS-VGIDLVPY---------PPLVIEGDFHRQPF---DDETFDFEFSN----V 170 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v-~gvD~s~~---------~~~~~~~d~~~~~~---~~~~fD~V~~~----~ 170 (257)
...+++|+-||.|.+...+.+.|. .-+ .++|+++. ......+|+.++.. +...+|+++.+ .
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~ 88 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQP 88 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTT
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCccC
Confidence 345899999999999999988773 345 69999975 22356677777642 22246776421 1
Q ss_pred h--------hccccHH-HHHHHHHH-hc-----cCCcEEEEE-eccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEE-e
Q 025148 171 F--------DHALYPD-KFVMEIER-TL-----KPGGVCVLH-VALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRK-V 233 (257)
Q Consensus 171 l--------~h~~~~~-~~l~~~~r-~L-----kpgG~l~i~-~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~-~ 233 (257)
+ ....|+. ..+.++.| ++ +|. .++++ ++..... -..+.+.+.|++.|+..... +
T Consensus 89 fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~--------~~~~~i~~~l~~~GY~v~~~vl 159 (327)
T 3qv2_A 89 YNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK-HIFIENVPLFKES--------LVFKEIYNILIKNQYYIKDIIC 159 (327)
T ss_dssp CSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGS--------HHHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccCCCCCCCccccchhHHHHHHHHHHHhccCCC-EEEEEchhhhcCh--------HHHHHHHHHHHhCCCEEEEEEE
Confidence 1 1223444 45666666 54 453 44443 3322110 02456777788888753322 2
Q ss_pred --cCCCC
Q 025148 234 --DGFGL 238 (257)
Q Consensus 234 --~gf~~ 238 (257)
..|++
T Consensus 160 ~a~~yGv 166 (327)
T 3qv2_A 160 SPIDIGI 166 (327)
T ss_dssp CGGGGTC
T ss_pred eHHHcCC
Confidence 25665
No 394
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=56.06 E-value=1.4 Score=38.14 Aligned_cols=85 Identities=14% Similarity=0.035 Sum_probs=47.5
Q ss_pred CCCCCeEEEECC-C-CCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCCCC-----CCCchhHHHHHHhhc
Q 025148 108 LSNESKALCIGA-R-VGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQPF-----DDETFDFEFSNVFDH 173 (257)
Q Consensus 108 ~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~~~-----~~~~fD~V~~~~l~h 173 (257)
+++|++||-+|+ | .|..+..+++....+|++++ ++..... ...|..+..+ ....+|+|+..
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~---- 255 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDN---- 255 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEES----
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEEC----
Confidence 678899999994 4 36666666665335899988 5442110 0111111110 00235554332
Q ss_pred cccHHHHHHHHHHhccCCcEEEEE
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
...+...++...+.|++||.++..
T Consensus 256 ~g~~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 256 VGGSTETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp SCTTHHHHGGGGBCSSSCCEEEES
T ss_pred CCChhhhhHHHHHhhcCCcEEEEe
Confidence 222323556777889999998764
No 395
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=55.23 E-value=57 Score=27.34 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=28.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHc-----CCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV-----GVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~ 144 (257)
.+..|+=+|||.|.....|++. ...+.+.+|..+.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~ 99 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHH 99 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCC
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcc
Confidence 4679999999999999999874 2358899998764
No 396
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=55.08 E-value=2.9 Score=35.68 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=15.2
Q ss_pred HHHHHHHhccCCcEEEEEe
Q 025148 180 FVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~~ 198 (257)
.+..+.+.|++||.+++.-
T Consensus 245 ~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 245 LASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp HHHHHHHHSCTTCEEEECC
T ss_pred hHHHHHhhhcCCCEEEEEe
Confidence 3477889999999988753
No 397
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=52.35 E-value=11 Score=30.77 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccCCcEEEEEe
Q 025148 177 PDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
....++++.++|||||.+++..
T Consensus 53 ~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 53 TYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEEc
Confidence 3467888999999999999975
No 398
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=51.71 E-value=26 Score=28.25 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=39.0
Q ss_pred CeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC--------CCcEEEecCCCCCCCCCchhHHHH
Q 025148 112 SKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY--------PPLVIEGDFHRQPFDDETFDFEFS 168 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~ 168 (257)
++||=.|| |.++..+.+. ...+|++++.++. .+.++.+|+.++. -..+|.|+.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~ 69 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLI 69 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEE
Confidence 58999994 8888777653 2249999988764 4677888988866 345787755
No 399
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=51.68 E-value=10 Score=33.39 Aligned_cols=83 Identities=14% Similarity=0.054 Sum_probs=49.6
Q ss_pred CCeEEEECCCCCHHHHHHHH---cCCCcEEEecCCCC--------CCcEEEecCCCCCC----CCCchhHHHHHHhhccc
Q 025148 111 ESKALCIGARVGQEVEALKR---VGVSDSVGIDLVPY--------PPLVIEGDFHRQPF----DDETFDFEFSNVFDHAL 175 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~--------~~~~~~~d~~~~~~----~~~~fD~V~~~~l~h~~ 175 (257)
+.+|+=+|+| .++..+++ .....|+++|.+++ ...++.+|..+... .-+..|+|++. +.
T Consensus 4 ~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~----~~ 77 (413)
T 3l9w_A 4 GMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINA----ID 77 (413)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEEC----CS
T ss_pred CCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEEC----CC
Confidence 4678889986 45544443 23359999999976 45667777765321 11234544331 12
Q ss_pred cHH--HHHHHHHHhccCCcEEEEEec
Q 025148 176 YPD--KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 176 ~~~--~~l~~~~r~LkpgG~l~i~~~ 199 (257)
+.+ ..+....|.+.|+..++..+.
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 222 344566777888888887663
No 400
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=51.40 E-value=9.7 Score=31.82 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=26.7
Q ss_pred chhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 162 TFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+|..+=..|-..+...++++..+.++|+|||++++.+
T Consensus 197 ~FQAlRI~VN~EL~~L~~~L~~a~~~L~~gGrl~vis 233 (285)
T 1wg8_A 197 TFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIA 233 (285)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 3555422344444556689999999999999999876
No 401
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=50.00 E-value=12 Score=31.87 Aligned_cols=87 Identities=15% Similarity=0.020 Sum_probs=51.5
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCC---------cEEEecCC-CC--CCCCCchhHHHHHHhh
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPP---------LVIEGDFH-RQ--PFDDETFDFEFSNVFD 172 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~---------~~~~~d~~-~~--~~~~~~fD~V~~~~l~ 172 (257)
..++++++||-+|+|. |..+..+++.-..+|+++|.+++.. .++...-. +. ... +.+|+|+..+-
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~-~~~D~vid~~g- 252 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYF-DTFDLIVVCAS- 252 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSC-SCEEEEEECCS-
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhh-cCCCEEEECCC-
Confidence 4567899999999854 5666666664234899999887732 12211111 10 011 35777654311
Q ss_pred cccc-HHHHHHHHHHhccCCcEEEEE
Q 025148 173 HALY-PDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 173 h~~~-~~~~l~~~~r~LkpgG~l~i~ 197 (257)
. ....++...+.|++||.++..
T Consensus 253 ---~~~~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 253 ---SLTDIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp ---CSTTCCTTTGGGGEEEEEEEEEC
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEe
Confidence 1 013456677899999998764
No 402
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=49.70 E-value=12 Score=29.33 Aligned_cols=70 Identities=10% Similarity=-0.021 Sum_probs=38.5
Q ss_pred CCCeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHHHHhhccccHHHHHHHHHHh
Q 025148 110 NESKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFVMEIERT 187 (257)
Q Consensus 110 ~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~ 187 (257)
...+|.=||+|. +.++..+++.+. +|+.+|.+++ .-...|+|+..+- .....++++++...
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~~~--------------~~~~aD~vi~av~--~~~~~~v~~~l~~~ 80 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSKDQ--------------ATTLGEIVIMAVP--YPALAALAKQYATQ 80 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTCC--------------CSSCCSEEEECSC--HHHHHHHHHHTHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHH--------------HhccCCEEEEcCC--cHHHHHHHHHHHHh
Confidence 456899999874 233344445454 8999998765 1123576544311 11123566667667
Q ss_pred ccCCcEEEEEe
Q 025148 188 LKPGGVCVLHV 198 (257)
Q Consensus 188 LkpgG~l~i~~ 198 (257)
++ |.+++.+
T Consensus 81 ~~--~~~vi~~ 89 (209)
T 2raf_A 81 LK--GKIVVDI 89 (209)
T ss_dssp HT--TSEEEEC
T ss_pred cC--CCEEEEE
Confidence 76 4455544
No 403
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=49.61 E-value=11 Score=32.40 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=22.4
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
..+...+++|..+.++|+|||++++.+
T Consensus 248 ~EL~~L~~~L~~a~~~L~~gGRl~VIS 274 (347)
T 3tka_A 248 SELEEIEQALKSSLNVLAPGGRLSIIS 274 (347)
T ss_dssp THHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 344456689999999999999999987
No 404
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}
Probab=48.91 E-value=6.8 Score=37.69 Aligned_cols=85 Identities=18% Similarity=0.068 Sum_probs=50.6
Q ss_pred hcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcEEE------ecCCCCCC--------CCCchhHHHHH
Q 025148 106 KLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLVIE------GDFHRQPF--------DDETFDFEFSN 169 (257)
Q Consensus 106 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~------~d~~~~~~--------~~~~fD~V~~~ 169 (257)
..+++|++||=.|+ |.|..+..+++.-..+|++++.+++ ..... .+..+..+ ....+|+|+-.
T Consensus 341 a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k-~~~l~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~ 419 (795)
T 3slk_A 341 AGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDK-WQAVELSREHLASSRTCDFEQQFLGATGGRGVDVVLNS 419 (795)
T ss_dssp TCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGG-GGGSCSCGGGEECSSSSTHHHHHHHHSCSSCCSEEEEC
T ss_pred hCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHH-hhhhhcChhheeecCChhHHHHHHHHcCCCCeEEEEEC
Confidence 34578999999995 4477777888764459999986553 11110 01111111 01234444332
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+.. +.+++..++|+++|+++..
T Consensus 420 ----~gg--~~~~~~l~~l~~~Gr~v~i 441 (795)
T 3slk_A 420 ----LAG--EFADASLRMLPRGGRFLEL 441 (795)
T ss_dssp ----CCT--TTTHHHHTSCTTCEEEEEC
T ss_pred ----CCc--HHHHHHHHHhcCCCEEEEe
Confidence 211 4567888999999998875
No 405
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=47.70 E-value=23 Score=25.25 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=28.8
Q ss_pred CCeEEEECCCCCHHHHHHHH----cCCCcEEEecCCCC--------CCcEEEecCCC
Q 025148 111 ESKALCIGARVGQEVEALKR----VGVSDSVGIDLVPY--------PPLVIEGDFHR 155 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~----~~~~~v~gvD~s~~--------~~~~~~~d~~~ 155 (257)
..+|+=+||| .++..+++ .+. +|+++|.+++ ...++.+|..+
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~~ 59 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPTD 59 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTTC
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCCC
Confidence 4579999985 45555443 354 9999999865 34566777655
No 406
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=46.67 E-value=6.8 Score=36.02 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=28.0
Q ss_pred CCchhHHHHH-----HhhccccHH-------HHHHHHHHhccCCcEEEEEe
Q 025148 160 DETFDFEFSN-----VFDHALYPD-------KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 160 ~~~fD~V~~~-----~l~h~~~~~-------~~l~~~~r~LkpgG~l~i~~ 198 (257)
++.||+|+.| -.||..+-+ .+-....+.|||||.+++..
T Consensus 219 ~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~ 269 (670)
T 4gua_A 219 QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKS 269 (670)
T ss_dssp CCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEE
Confidence 4689999886 345554322 22367889999999999875
No 407
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=46.62 E-value=66 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=22.2
Q ss_pred CCeEEEECCCCCHHHHH----HHHcCCCcEEEecCCCC
Q 025148 111 ESKALCIGARVGQEVEA----LKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~----l~~~~~~~v~gvD~s~~ 144 (257)
+++||=.|++.| ++.. |++.|. +|+++|.++.
T Consensus 22 ~k~vlITGas~g-IG~~la~~l~~~G~-~V~~~~r~~~ 57 (251)
T 3orf_A 22 SKNILVLGGSGA-LGAEVVKFFKSKSW-NTISIDFREN 57 (251)
T ss_dssp CCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEeCCcc
Confidence 568898888754 4444 444454 8999998865
No 408
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=42.64 E-value=18 Score=30.52 Aligned_cols=86 Identities=16% Similarity=0.078 Sum_probs=50.1
Q ss_pred cCCCCCeEEEECCC--CCHHHHHHHHcCCCcEEEecCCCCCCcE-------EEecCCCC-CCC-------CCchhHHHHH
Q 025148 107 LLSNESKALCIGAR--VGQEVEALKRVGVSDSVGIDLVPYPPLV-------IEGDFHRQ-PFD-------DETFDFEFSN 169 (257)
Q Consensus 107 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~-------~~~d~~~~-~~~-------~~~fD~V~~~ 169 (257)
.++++++||-+|++ .|..+..++.....+|+++|.+++.... ...|..+. .+. ++.+|+|+.+
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~ 245 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINV 245 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEEC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEEC
Confidence 46788999999983 4555555555433499999988762110 11122210 000 0124444332
Q ss_pred HhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 170 VFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 170 ~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
+ . ....++.+.+.|++||.+++.
T Consensus 246 ~----g-~~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 246 S----V-SEAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp S----S-CHHHHHHHTTSEEEEEEEEEC
T ss_pred C----C-cHHHHHHHHHHHhcCCEEEEE
Confidence 1 1 135788889999999998765
No 409
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=42.43 E-value=18 Score=26.52 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=22.9
Q ss_pred CCCCeEEEECCCCCHHHHHHH----HcCCCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALK----RVGVSDSVGIDLVPY 144 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~----~~~~~~v~gvD~s~~ 144 (257)
..+.+|+=+||| .++..++ +.+. +|+++|.++.
T Consensus 17 ~~~~~v~IiG~G--~iG~~la~~L~~~g~-~V~vid~~~~ 53 (155)
T 2g1u_A 17 QKSKYIVIFGCG--RLGSLIANLASSSGH-SVVVVDKNEY 53 (155)
T ss_dssp CCCCEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCGG
T ss_pred cCCCcEEEECCC--HHHHHHHHHHHhCCC-eEEEEECCHH
Confidence 456799999985 4444433 3354 8999998865
No 410
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=41.30 E-value=16 Score=32.92 Aligned_cols=46 Identities=9% Similarity=0.020 Sum_probs=35.6
Q ss_pred CCeEEEECCCCCHHHHHHHHcCCCcEEEecCCCC-------------CCcEEEecCCCC
Q 025148 111 ESKALCIGARVGQEVEALKRVGVSDSVGIDLVPY-------------PPLVIEGDFHRQ 156 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-------------~~~~~~~d~~~~ 156 (257)
.-+++|+=||.|.+...+.+.|..-|.++|+++. ...++.+|+.++
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i 146 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDI 146 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhh
Confidence 3589999999999999998887656899999865 124566776654
No 411
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=40.84 E-value=1.7 Score=36.09 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=21.6
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+|.=||+|. +.++..+++.|. +|+.+|.+++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 38 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTD 38 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence 4788888875 223344445565 9999999876
No 412
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=40.67 E-value=46 Score=27.34 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCH---HHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQ---EVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~ 144 (257)
+|+.+|=-|++.|. .+..|++.|. +|+.+|.+++
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~ 64 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKD 64 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHH
Confidence 57788888988763 4455556564 8998888754
No 413
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=40.65 E-value=74 Score=20.71 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEc
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRK 246 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k 246 (257)
|.-..++..+.+++|..+.+.+.+.. ....+.++.++.|+..+.....-+ ...+.++|
T Consensus 23 Pvl~~kkal~~l~~G~~l~V~~dd~~-----------a~~di~~~~~~~G~~~~~~~~~~~-~~~i~I~K 80 (82)
T 3lvj_C 23 PVMMVRKTVRNMQPGETLLIIADDPA-----------TTRDIPGFCTFMEHELVAKETDGL-PYRYLIRK 80 (82)
T ss_dssp HHHHHHHHHHTSCTTCEEEEEECCTT-----------HHHHHHHHHHHTTCEEEEEECSSS-SEEEEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCcc-----------HHHHHHHHHHHCCCEEEEEEecCC-EEEEEEEE
Confidence 33345666677889999888774332 467888999999987666543222 23455555
No 414
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=40.48 E-value=13 Score=31.19 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEe
Q 025148 174 ALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 174 ~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
+...+++|..+.++|+|||++++.+
T Consensus 221 l~~l~~~l~~~~~~l~~ggr~~vis 245 (301)
T 1m6y_A 221 LENLKEFLKKAEDLLNPGGRIVVIS 245 (301)
T ss_dssp HHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEEe
Confidence 3445678889999999999999876
No 415
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=40.25 E-value=19 Score=32.11 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=46.4
Q ss_pred CeEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCCCCc-----------------------------EEEecCCCCCCCC
Q 025148 112 SKALCIGARV-G-QEVEALKRVGVSDSVGIDLVPYPPL-----------------------------VIEGDFHRQPFDD 160 (257)
Q Consensus 112 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~~~-----------------------------~~~~d~~~~~~~~ 160 (257)
.+|.-||+|. | .++..+++.|. +|+.+|.+++... .+..+... .
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~-- 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE--L-- 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGG--G--
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHH--H--
Confidence 4799999986 3 34455555565 9999999865110 01111110 1
Q ss_pred CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEE
Q 025148 161 ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
...|+|+..+.+...-...+++++...+++|.+++.
T Consensus 113 ~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 113 STVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 235665554443222235677888889988876654
No 416
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=39.26 E-value=25 Score=29.46 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=43.9
Q ss_pred CeEEEECCCC--CHHHHHHHHcCC-CcEEEecCCCCCCc---------EEEecCCCCCCCCCchhHHHHHHhhccccHHH
Q 025148 112 SKALCIGARV--GQEVEALKRVGV-SDSVGIDLVPYPPL---------VIEGDFHRQPFDDETFDFEFSNVFDHALYPDK 179 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~-~~v~gvD~s~~~~~---------~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~~ 179 (257)
.+|.=||+|. |.++..+.+.|. .+|+++|.+++... ....+..+. .-...|+|+..+-.. ...+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~--~~~~aDvVilavp~~--~~~~ 109 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKV--EDFSPDFVMLSSPVR--TFRE 109 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGG--GGGCCSEEEECSCGG--GHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHH--hhccCCEEEEeCCHH--HHHH
Confidence 6899999874 234444555453 28999999875211 111222210 012357654431111 2346
Q ss_pred HHHHHHHhccCCcEEE
Q 025148 180 FVMEIERTLKPGGVCV 195 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~ 195 (257)
+++++...+++|.+++
T Consensus 110 vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 110 IAKKLSYILSEDATVT 125 (314)
T ss_dssp HHHHHHHHSCTTCEEE
T ss_pred HHHHHhhccCCCcEEE
Confidence 7788888898877554
No 417
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=39.20 E-value=18 Score=32.43 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=48.6
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCCC---------------------------c-EEEecCCCCCCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYPP---------------------------L-VIEGDFHRQPFDDE 161 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~---------------------------~-~~~~d~~~~~~~~~ 161 (257)
.+|-=||+|. +.++..+++.|. +|+.+|.+++.. . ....|.. .+ .
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~--al--~ 129 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH--KL--S 129 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG--GC--T
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH--HH--c
Confidence 5788899986 345566666665 999999987510 0 0111211 11 2
Q ss_pred chhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 162 TFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 162 ~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
..|+|+-.+.+-..-..++++++...++|+.+++-.
T Consensus 130 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasn 165 (460)
T 3k6j_A 130 NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTN 165 (460)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEEC
T ss_pred cCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEec
Confidence 346655544443333456788899999998877543
No 418
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=39.09 E-value=4.8 Score=34.78 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=41.6
Q ss_pred CCeEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCCCCcEEEe-cCCCC-CCC-----CCchhHHHHHHhhccccHHHHH
Q 025148 111 ESKALCIGARV-G-QEVEALKRVGVSDSVGIDLVPYPPLVIEG-DFHRQ-PFD-----DETFDFEFSNVFDHALYPDKFV 181 (257)
Q Consensus 111 ~~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~~~~~~~-d~~~~-~~~-----~~~fD~V~~~~l~h~~~~~~~l 181 (257)
..+|.=||+|. | .++..|++.+. +|+++|.++....-... .+... ... ....|+|+..+-.. ..++++
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~--~v~~vl 98 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA--VVDSML 98 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG--GHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH--HHHHHH
Confidence 46899999874 2 22344445564 99999998652111000 00000 000 01125554332111 344667
Q ss_pred HHHHHhccCCcEEEE
Q 025148 182 MEIERTLKPGGVCVL 196 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i 196 (257)
+++...|++|.+++-
T Consensus 99 ~~l~~~l~~g~iiId 113 (358)
T 4e21_A 99 QRMTPLLAANDIVID 113 (358)
T ss_dssp HHHGGGCCTTCEEEE
T ss_pred HHHHhhCCCCCEEEe
Confidence 778788887665443
No 419
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=38.60 E-value=17 Score=29.49 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=41.1
Q ss_pred eEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCCCC--------c-EEEecCCCCCCCCCchhHHHHHHhhccccHHHHH
Q 025148 113 KALCIGARV-G-QEVEALKRVGVSDSVGIDLVPYPP--------L-VIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFV 181 (257)
Q Consensus 113 ~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~~--------~-~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~~~l 181 (257)
+|.=||||. | .++..+.+.+. +|+++|.+++.. . ....+..+. ...|+|+..+-.. ....++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~D~vi~av~~~--~~~~~~ 74 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLCTPIQ--LILPTL 74 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEECSCHH--HHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccCCHHHh----CCCCEEEEECCHH--HHHHHH
Confidence 577788874 2 23334444454 899999886511 1 111222221 3467764431111 123566
Q ss_pred HHHHHhccCCcEEEEEe
Q 025148 182 MEIERTLKPGGVCVLHV 198 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i~~ 198 (257)
+++...+++|..+ +.+
T Consensus 75 ~~l~~~~~~~~~v-v~~ 90 (279)
T 2f1k_A 75 EKLIPHLSPTAIV-TDV 90 (279)
T ss_dssp HHHGGGSCTTCEE-EEC
T ss_pred HHHHhhCCCCCEE-EEC
Confidence 7777778877654 444
No 420
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=37.72 E-value=21 Score=29.51 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=41.6
Q ss_pred CeEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCc-----hhHHHHHHhhccccH---HHHH
Q 025148 112 SKALCIGARV-G-QEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDET-----FDFEFSNVFDHALYP---DKFV 181 (257)
Q Consensus 112 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~-----fD~V~~~~l~h~~~~---~~~l 181 (257)
.+|.-||+|. | .++..|++.+. +|+++|.+++...-.... .....+.. .|+|+ ..++++ ++++
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~--g~~~~~~~~~~~~aDvvi----~~vp~~~~~~~v~ 88 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEA--GATLADSVADVAAADLIH----ITVLDDAQVREVV 88 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHT--TCEECSSHHHHTTSSEEE----ECCSSHHHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHC--CCEEcCCHHHHHhCCEEE----EECCChHHHHHHH
Confidence 5789999885 2 23344444454 899999998743211100 00000100 34433 333332 3566
Q ss_pred HHHHHhccCCcEEEE
Q 025148 182 MEIERTLKPGGVCVL 196 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i 196 (257)
+++...+++|..++-
T Consensus 89 ~~l~~~l~~g~ivv~ 103 (296)
T 3qha_A 89 GELAGHAKPGTVIAI 103 (296)
T ss_dssp HHHHTTCCTTCEEEE
T ss_pred HHHHHhcCCCCEEEE
Confidence 778888888766544
No 421
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=36.78 E-value=1.5e+02 Score=23.91 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=21.1
Q ss_pred CCCeEEEECCCCCH---HHHHHHHcCCCcEEEecCCC
Q 025148 110 NESKALCIGARVGQ---EVEALKRVGVSDSVGIDLVP 143 (257)
Q Consensus 110 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~ 143 (257)
.++++|=.|++.|. ++..|++.|. +|+.+|.+.
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~ 81 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDE 81 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 46788888877542 3344445554 888887764
No 422
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=36.37 E-value=13 Score=30.19 Aligned_cols=82 Identities=21% Similarity=0.131 Sum_probs=43.2
Q ss_pred eEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCCCCcEEEecCC-C------CCCCC----CchhHHHHHHhhccccHHH
Q 025148 113 KALCIGARV-G-QEVEALKRVGVSDSVGIDLVPYPPLVIEGDFH-R------QPFDD----ETFDFEFSNVFDHALYPDK 179 (257)
Q Consensus 113 ~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~-~------~~~~~----~~fD~V~~~~l~h~~~~~~ 179 (257)
+|.=||+|. | .++..|++.+. +|+.+|.++.....+..... . ....+ ...|+|+..+-.+ +..+
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~--~~~~ 78 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW--QVSD 78 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG--GHHH
T ss_pred eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH--hHHH
Confidence 677889864 2 23344445554 89999998764332221110 0 00000 1245543321111 2356
Q ss_pred HHHHHHHhccCCcEEEEE
Q 025148 180 FVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 180 ~l~~~~r~LkpgG~l~i~ 197 (257)
+++++...++++..++..
T Consensus 79 v~~~l~~~l~~~~~vv~~ 96 (291)
T 1ks9_A 79 AVKSLASTLPVTTPILLI 96 (291)
T ss_dssp HHHHHHTTSCTTSCEEEE
T ss_pred HHHHHHhhCCCCCEEEEe
Confidence 778888888888765554
No 423
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=36.03 E-value=28 Score=29.55 Aligned_cols=85 Identities=12% Similarity=-0.030 Sum_probs=47.4
Q ss_pred cCC-CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEEE--------ecCCCC----CCCCCchhHHHHHHhh
Q 025148 107 LLS-NESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVIE--------GDFHRQ----PFDDETFDFEFSNVFD 172 (257)
Q Consensus 107 ~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~~--------~d~~~~----~~~~~~fD~V~~~~l~ 172 (257)
.+. ++++||-+|+|. |..+..+++....+|+++|.+++...... .|..+. .. .+.+|+|+-.
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~-~~g~D~vid~--- 251 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSEL-ADSLDYVIDT--- 251 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHS-TTTEEEEEEC---
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHh-cCCCCEEEEC---
Confidence 355 899999999754 45555555542349999998876221110 011000 00 0134554332
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEE
Q 025148 173 HALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 173 h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
... ...++...+.|++||.++..
T Consensus 252 -~g~-~~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 252 -VPV-HHALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp -CCS-CCCSHHHHTTEEEEEEEEEC
T ss_pred -CCC-hHHHHHHHHHhccCCEEEEe
Confidence 111 12456677899999998775
No 424
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=32.11 E-value=1.2e+02 Score=20.59 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEe
Q 025148 177 PDKFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKV 233 (257)
Q Consensus 177 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~ 233 (257)
|.-..++..+-|++|..|.+.+.+.. ....+.++.++.|+......
T Consensus 39 Pvl~tkkaL~~l~~Ge~L~Vl~dd~~-----------a~~dI~~~~~~~G~~v~~~e 84 (98)
T 1jdq_A 39 PDVETKRALQNMKPGEILEVWIDYPM-----------SKERIPETVKKLGHEVLEIE 84 (98)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEESSCT-----------HHHHHHHHHHHSSCCEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCcc-----------HHHHHHHHHHHCCCEEEEEE
Confidence 33445666677899999888774332 46788899999887655543
No 425
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=32.07 E-value=1.9e+02 Score=22.91 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=15.1
Q ss_pred HHHHHHHHhccCCcEEEEEec
Q 025148 179 KFVMEIERTLKPGGVCVLHVA 199 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~~~ 199 (257)
.+.+.+.+.++.+|.++....
T Consensus 133 ~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 133 FVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HHHHHHHHHCCTTCEEEEECC
T ss_pred HHHHHHHHHHhcCCeEEEEeC
Confidence 455777788888888777653
No 426
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=31.81 E-value=11 Score=31.25 Aligned_cols=72 Identities=13% Similarity=-0.009 Sum_probs=38.6
Q ss_pred CeEEEEC-CCC--CHHHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHHHHhhccccHHHHHHHHHHhc
Q 025148 112 SKALCIG-ARV--GQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFSNVFDHALYPDKFVMEIERTL 188 (257)
Q Consensus 112 ~~vLDiG-cG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~l~h~~~~~~~l~~~~r~L 188 (257)
.+|.=|| +|. +.++..+++.+. +|+++|.++.. +..+ .-...|+|+..+=. ....++++++...+
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~~~~------~~~~---~~~~aDvVilavp~--~~~~~vl~~l~~~l 89 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWA------VAES---ILANADVVIVSVPI--NLTLETIERLKPYL 89 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGG------GHHH---HHTTCSEEEECSCG--GGHHHHHHHHGGGC
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECCccc------CHHH---HhcCCCEEEEeCCH--HHHHHHHHHHHhhc
Confidence 4789998 874 333444444454 89999987541 1000 00124554332111 12446777777778
Q ss_pred cCCcEEE
Q 025148 189 KPGGVCV 195 (257)
Q Consensus 189 kpgG~l~ 195 (257)
+++.+++
T Consensus 90 ~~~~iv~ 96 (298)
T 2pv7_A 90 TENMLLA 96 (298)
T ss_dssp CTTSEEE
T ss_pred CCCcEEE
Confidence 8776443
No 427
>1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A*
Probab=31.24 E-value=1.2e+02 Score=25.67 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=28.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHc----C-CCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV----G-VSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~ 144 (257)
+|..|+=+|++.|.....|.+. + ..+.+.+|..+.
T Consensus 75 ~g~~VVYaGsAPG~HI~fL~~lF~~l~~~lkwvLiDp~~f 114 (348)
T 1vpt_A 75 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHH 114 (348)
T ss_dssp TTCEEEEESCSSCHHHHHHHHHHHHTTCCCEEEEEESSCC
T ss_pred CCCeEEEeCcCCcchHHHHHHHhhhcCCceEEEEECCCch
Confidence 3669999999999999888874 1 358899998764
No 428
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=30.54 E-value=23 Score=33.72 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=53.4
Q ss_pred CeEEEECCCCC--HHHHHHHHcCCCcEEEecCCCCC-----------------------------CcEEEecCCCCCCCC
Q 025148 112 SKALCIGARVG--QEVEALKRVGVSDSVGIDLVPYP-----------------------------PLVIEGDFHRQPFDD 160 (257)
Q Consensus 112 ~~vLDiGcG~G--~~~~~l~~~~~~~v~gvD~s~~~-----------------------------~~~~~~d~~~~~~~~ 160 (257)
.+|-=||+|+= .++..++..|. +|+-+|++++. ......+... +
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l-- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE--L-- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG--G--
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH--H--
Confidence 47889999872 34445555564 99999999650 0001111111 1
Q ss_pred CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 161 ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 161 ~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...|+|+=.+.|-+.--.++++++..+++|+.++.-.+
T Consensus 392 ~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNT 429 (742)
T 3zwc_A 392 STVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNT 429 (742)
T ss_dssp GSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred hhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecC
Confidence 22566666677777777889999999999998766544
No 429
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=29.95 E-value=13 Score=31.61 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=48.5
Q ss_pred CCeEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCCCCc-------------EEEecCC----------CCCCCC-----
Q 025148 111 ESKALCIGARV-G-QEVEALKRVGVSDSVGIDLVPYPPL-------------VIEGDFH----------RQPFDD----- 160 (257)
Q Consensus 111 ~~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~~~-------------~~~~d~~----------~~~~~~----- 160 (257)
..+|.=||+|+ | .++..++..|. +|+.+|++++... ...+... .+....
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a 84 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA 84 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence 46899999986 2 34445555565 9999999976100 0000000 000000
Q ss_pred -CchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 161 -ETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 161 -~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
...|+|+=.+.|-+.--.++++++.++++|+-++.-.+
T Consensus 85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNT 123 (319)
T 3ado_A 85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSS 123 (319)
T ss_dssp TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECC
T ss_pred hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhh
Confidence 11233333344545555678999999999988776654
No 430
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=29.91 E-value=14 Score=33.32 Aligned_cols=80 Identities=11% Similarity=0.097 Sum_probs=45.9
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCCCcE-------------------------------EEecCCCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYPPLV-------------------------------IEGDFHRQPF 158 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~-------------------------------~~~d~~~~~~ 158 (257)
.+|-=||+|. +.++..+++.|. +|+.+|.+++...- ...+.. .+
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~ 82 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH--AL 82 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG--GG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH--Hh
Confidence 4677788875 344555566565 99999998762110 011111 01
Q ss_pred CCCchhHHHHHHhhccccHHHHHHHHHHhccCCcEEEE
Q 025148 159 DDETFDFEFSNVFDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 159 ~~~~fD~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
...|+|+-.+.+...-..++++++...++++.+++.
T Consensus 83 --~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~Ilas 118 (483)
T 3mog_A 83 --AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTT 118 (483)
T ss_dssp --GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEe
Confidence 123554444433332335678899999999887654
No 431
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=29.58 E-value=99 Score=20.44 Aligned_cols=60 Identities=20% Similarity=0.087 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcc-CCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEEEecCCCCceEEEEEccc
Q 025148 177 PDKFVMEIERTLK-PGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVRKVDGFGLDTEVVFRKNA 248 (257)
Q Consensus 177 ~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~~~~gf~~~~~vv~~k~~ 248 (257)
|.-..++..+.|+ +|+.+.+.+.+.. +...+.++.++.|+........-+ ...+.++|..
T Consensus 14 Pvl~~kkal~~l~~~G~~L~V~~dd~~-----------a~~dI~~~~~~~G~~v~~~~~~~g-~~~i~I~Kg~ 74 (87)
T 3hz7_A 14 PVIRAKKALAELGEAGGVVTVLVDNDI-----------SRQNLQKMAEGMGYQSEYLEKDNG-VIEVTIVAGE 74 (87)
T ss_dssp HHHHHHHHHHTTGGGCCEEEEEESSHH-----------HHHHHHHHHHHHTCEEEEEECGGG-CEEEEEESCC
T ss_pred HHHHHHHHHHhccCCCCEEEEEECCcc-----------HHHHHHHHHHHCCCEEEEEEecCC-EEEEEEEECC
Confidence 3334455666786 9999988874332 467888899999987655542222 2235556543
No 432
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=29.52 E-value=51 Score=27.87 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=27.8
Q ss_pred hcCCCCCeEEEECCCC-CHHHHHHHHcC-CCcEEEecCCCC
Q 025148 106 KLLSNESKALCIGARV-GQEVEALKRVG-VSDSVGIDLVPY 144 (257)
Q Consensus 106 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~gvD~s~~ 144 (257)
..++++++||-+|+|. |..+..+++.. ..+|+++|.+++
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~ 222 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE 222 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 4568899999999853 44445555532 459999998865
No 433
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=29.48 E-value=7.3 Score=32.08 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=40.1
Q ss_pred CeEEEECC-CC-C-HHHHHHHHcCCCcEEEecCCCCCCcEEE---ecCCCCCCCCCchhHHHHHHhhccccHHHHHHHHH
Q 025148 112 SKALCIGA-RV-G-QEVEALKRVGVSDSVGIDLVPYPPLVIE---GDFHRQPFDDETFDFEFSNVFDHALYPDKFVMEIE 185 (257)
Q Consensus 112 ~~vLDiGc-G~-G-~~~~~l~~~~~~~v~gvD~s~~~~~~~~---~d~~~~~~~~~~fD~V~~~~l~h~~~~~~~l~~~~ 185 (257)
.+|.=||+ |. | .++..|.+.+. +|+++|.+++...... .+..+..-.-...|+|+..+-... ..++++++.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~--~~~v~~~l~ 88 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNI--IEKVAEDIV 88 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHH--HHHHHHHHG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchH--HHHHHHHHH
Confidence 48999999 74 2 33344455554 8999998764211000 001111100123566544321111 345667777
Q ss_pred HhccCCcEEE
Q 025148 186 RTLKPGGVCV 195 (257)
Q Consensus 186 r~LkpgG~l~ 195 (257)
..+++|..++
T Consensus 89 ~~l~~~~ivv 98 (286)
T 3c24_A 89 PRVRPGTIVL 98 (286)
T ss_dssp GGSCTTCEEE
T ss_pred HhCCCCCEEE
Confidence 7777766444
No 434
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=29.34 E-value=44 Score=28.41 Aligned_cols=85 Identities=15% Similarity=-0.002 Sum_probs=46.9
Q ss_pred CC-CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCCCCcEE--------EecCCCCC-C--CCCchhHHHHHHhhcc
Q 025148 108 LS-NESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPYPPLVI--------EGDFHRQP-F--DDETFDFEFSNVFDHA 174 (257)
Q Consensus 108 ~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~~--------~~d~~~~~-~--~~~~fD~V~~~~l~h~ 174 (257)
+. ++++||-+|+|. |..+..+++....+|+++|.+++..... ..|..+.. . ..+.+|+|+.. .
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~----~ 259 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDT----V 259 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEEC----C
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEEC----C
Confidence 45 889999999754 4555555554335999999886522110 11111100 0 00235555432 1
Q ss_pred ccHHHHHHHHHHhccCCcEEEEE
Q 025148 175 LYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 175 ~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
..+ ..++...+.|+++|.++..
T Consensus 260 g~~-~~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 260 SAV-HPLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp SSC-CCSHHHHHHEEEEEEEEEC
T ss_pred CcH-HHHHHHHHHHhcCCEEEEE
Confidence 111 2356677899999998764
No 435
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=28.51 E-value=38 Score=27.66 Aligned_cols=82 Identities=18% Similarity=0.125 Sum_probs=42.6
Q ss_pred CeEEEECCCC-C-HHHHHHHHcCCCcEEEecCCCCC--------CcEEE------ecCC--CC-CCCC--CchhHHHHHH
Q 025148 112 SKALCIGARV-G-QEVEALKRVGVSDSVGIDLVPYP--------PLVIE------GDFH--RQ-PFDD--ETFDFEFSNV 170 (257)
Q Consensus 112 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~--------~~~~~------~d~~--~~-~~~~--~~fD~V~~~~ 170 (257)
.+|.=||+|. | .++..|++.+. +|+.+|.+++. ..... ..+. +. ...+ ...|+|+..+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v 82 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT 82 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence 4788999874 2 23344444454 89999987641 11110 0000 10 1111 1578765432
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEE
Q 025148 171 FDHALYPDKFVMEIERTLKPGGVCVL 196 (257)
Q Consensus 171 l~h~~~~~~~l~~~~r~LkpgG~l~i 196 (257)
-.+ ...++++++...++++..++.
T Consensus 83 ~~~--~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 83 KAQ--QLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp CHH--HHHHHHHHHGGGCCTTCEEEE
T ss_pred ccc--cHHHHHHHHHHhcCCCCEEEE
Confidence 111 134677788888887765444
No 436
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=27.45 E-value=2.3e+02 Score=22.42 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=21.1
Q ss_pred CCCeEEEECCCCCH---HHHHHHHcCCCcEEEecCC
Q 025148 110 NESKALCIGARVGQ---EVEALKRVGVSDSVGIDLV 142 (257)
Q Consensus 110 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s 142 (257)
.+.++|=.|++.|. ++..|++.|. +|+.+|.+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~ 43 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDIC 43 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEccc
Confidence 46788888887542 3344455564 88888876
No 437
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=27.35 E-value=12 Score=31.05 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=43.9
Q ss_pred CeEEEECCCC--CHHHHHHHHcCCCcEEEecCCCCCCcEEEecCC------CCCCC--CCchhHHHHHHhhccccHHHHH
Q 025148 112 SKALCIGARV--GQEVEALKRVGVSDSVGIDLVPYPPLVIEGDFH------RQPFD--DETFDFEFSNVFDHALYPDKFV 181 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~------~~~~~--~~~fD~V~~~~l~h~~~~~~~l 181 (257)
.+|+=||+|. +.++..|++.+. +|+.++.+++.......+.. ..+.+ .+.+|+|+..+=.+ +..+++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~--~~~~~l 79 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH--QLDAVI 79 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG--GHHHHG
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc--CHHHHH
Confidence 4788899985 244455555564 89988887553222111100 00011 14578764431110 244677
Q ss_pred HHHHHhccCCcEEEE
Q 025148 182 MEIERTLKPGGVCVL 196 (257)
Q Consensus 182 ~~~~r~LkpgG~l~i 196 (257)
+++...++++..++.
T Consensus 80 ~~l~~~l~~~~~iv~ 94 (294)
T 3g17_A 80 PHLTYLAHEDTLIIL 94 (294)
T ss_dssp GGHHHHEEEEEEEEE
T ss_pred HHHHHhhCCCCEEEE
Confidence 888888887665443
No 438
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=26.81 E-value=57 Score=27.07 Aligned_cols=78 Identities=13% Similarity=-0.005 Sum_probs=41.4
Q ss_pred CCCeEEEECCCC-CH-HHHHHHHcCCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHH--H-HhhccccH---HHHH
Q 025148 110 NESKALCIGARV-GQ-EVEALKRVGVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFS--N-VFDHALYP---DKFV 181 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~--~-~l~h~~~~---~~~l 181 (257)
.|.+|.=||+|. |. ++..+...| .+|+++|.++...... .. ..+.+-++. + ++-|++.. ..++
T Consensus 121 ~g~tvGIIGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~-------~~-~~~l~ell~~aDiV~l~~P~t~~t~~li 191 (290)
T 3gvx_A 121 YGKALGILGYGGIGRRVAHLAKAFG-MRVIAYTRSSVDQNVD-------VI-SESPADLFRQSDFVLIAIPLTDKTRGMV 191 (290)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHT-CEEEEECSSCCCTTCS-------EE-CSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred ecchheeeccCchhHHHHHHHHhhC-cEEEEEeccccccccc-------cc-cCChHHHhhccCeEEEEeeccccchhhh
Confidence 467899999874 22 223333335 4999999987543210 00 112333322 2 34444421 1222
Q ss_pred -HHHHHhccCCcEEEE
Q 025148 182 -MEIERTLKPGGVCVL 196 (257)
Q Consensus 182 -~~~~r~LkpgG~l~i 196 (257)
++....+|||.+++=
T Consensus 192 ~~~~l~~mk~gailIN 207 (290)
T 3gvx_A 192 NSRLLANARKNLTIVN 207 (290)
T ss_dssp SHHHHTTCCTTCEEEE
T ss_pred hHHHHhhhhcCceEEE
Confidence 566788899887654
No 439
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=25.17 E-value=1.5e+02 Score=25.05 Aligned_cols=76 Identities=12% Similarity=-0.046 Sum_probs=39.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCCCCcEEEecCCCCCCCCCchhHHHH--H-HhhccccH---HHH
Q 025148 110 NESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPYPPLVIEGDFHRQPFDDETFDFEFS--N-VFDHALYP---DKF 180 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~~~~~~~d~~~~~~~~~~fD~V~~--~-~l~h~~~~---~~~ 180 (257)
.|++|.=||+| .++..+++. .+.+|++.|.++....- ... -.+.+-++. + ++-|++.. ..+
T Consensus 170 ~gktiGIIGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-------~~~-~~sl~ell~~aDvVil~vP~t~~t~~l 239 (340)
T 4dgs_A 170 KGKRIGVLGLG--QIGRALASRAEAFGMSVRYWNRSTLSGVD-------WIA-HQSPVDLARDSDVLAVCVAASAATQNI 239 (340)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHTTTCEEEEECSSCCTTSC-------CEE-CSSHHHHHHTCSEEEECC---------
T ss_pred cCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCcccccC-------cee-cCCHHHHHhcCCEEEEeCCCCHHHHHH
Confidence 46789999987 455444432 23499999988753110 000 112332322 2 44455422 233
Q ss_pred H-HHHHHhccCCcEEE
Q 025148 181 V-MEIERTLKPGGVCV 195 (257)
Q Consensus 181 l-~~~~r~LkpgG~l~ 195 (257)
+ ++....+|||.+++
T Consensus 240 i~~~~l~~mk~gailI 255 (340)
T 4dgs_A 240 VDASLLQALGPEGIVV 255 (340)
T ss_dssp -CHHHHHHTTTTCEEE
T ss_pred hhHHHHhcCCCCCEEE
Confidence 4 66778899988765
No 440
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=24.78 E-value=81 Score=26.30 Aligned_cols=35 Identities=14% Similarity=-0.047 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPYPP 146 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~~ 146 (257)
.+.+|.=||+| .++..+++. .+.+|+++|.++...
T Consensus 143 ~g~~vgIIG~G--~IG~~~A~~l~~~G~~V~~~d~~~~~~ 180 (311)
T 2cuk_A 143 QGLTLGLVGMG--RIGQAVAKRALAFGMRVVYHARTPKPL 180 (311)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred CCCEEEEEEEC--HHHHHHHHHHHHCCCEEEEECCCCccc
Confidence 45688889876 555554432 235999999887643
No 441
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=24.71 E-value=1.7e+02 Score=20.84 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=46.5
Q ss_pred CCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC------------CCcEEEecCCCCCC----CCCchhHHHHHHh
Q 025148 111 ESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY------------PPLVIEGDFHRQPF----DDETFDFEFSNVF 171 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~------------~~~~~~~d~~~~~~----~~~~fD~V~~~~l 171 (257)
..+|+=+|+ |..+..+++. ...+|+.+|.++. ...++.+|..+... .-+..|+|++.+=
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence 357888886 5666665542 2348999998741 35677777654310 0123454433211
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEe
Q 025148 172 DHALYPDKFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 172 ~h~~~~~~~l~~~~r~LkpgG~l~i~~ 198 (257)
. ......+....+.+.|...++...
T Consensus 81 ~--d~~n~~~~~~a~~~~~~~~ii~~~ 105 (153)
T 1id1_A 81 N--DADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp C--HHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred C--hHHHHHHHHHHHHHCCCCEEEEEE
Confidence 0 012234556667777777777755
No 442
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=24.39 E-value=1.4e+02 Score=23.66 Aligned_cols=56 Identities=18% Similarity=0.041 Sum_probs=37.2
Q ss_pred CCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC----CCcEEEecCCCCCC----CCCchhHHHH
Q 025148 111 ESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY----PPLVIEGDFHRQPF----DDETFDFEFS 168 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~----~~~~~~~d~~~~~~----~~~~fD~V~~ 168 (257)
.++||=.| . |.++..+++. ...+|++++.++. .+.++.+|+.+... -++.+|+|+.
T Consensus 3 ~~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih 69 (286)
T 3gpi_A 3 LSKILIAG-C-GDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVY 69 (286)
T ss_dssp CCCEEEEC-C-SHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred CCcEEEEC-C-CHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEE
Confidence 45899999 3 7888777652 2349999988754 56788888876431 1124787654
No 443
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=24.22 E-value=2.8e+02 Score=22.29 Aligned_cols=32 Identities=31% Similarity=0.289 Sum_probs=19.6
Q ss_pred CCCeEEEECCCCCH---HHHHHHHcCCCcEEEecCC
Q 025148 110 NESKALCIGARVGQ---EVEALKRVGVSDSVGIDLV 142 (257)
Q Consensus 110 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s 142 (257)
.++++|=.|++.|. ++..|++.|. +|+.+|.+
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~ 82 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLP 82 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCG
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35688888876442 2334444454 78887765
No 444
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=24.17 E-value=2.3e+02 Score=22.66 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCH---HHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQ---EVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~ 144 (257)
+|+.+|=-|++.|. .+..|++.|. +|+.+|.+++
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~ 44 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRAT 44 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHH
Confidence 56777877877652 3445555564 8888888744
No 445
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=23.89 E-value=2.8e+02 Score=22.27 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCC-----HHHHHHHHcCCCcEEEecCCC
Q 025148 110 NESKALCIGARVG-----QEVEALKRVGVSDSVGIDLVP 143 (257)
Q Consensus 110 ~~~~vLDiGcG~G-----~~~~~l~~~~~~~v~gvD~s~ 143 (257)
.++++|=.|++.| .++..|++.|. +|+.++.++
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~ 67 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGD 67 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCH
Confidence 4678999998743 34555666664 888887763
No 446
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=23.81 E-value=1.2e+02 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=25.7
Q ss_pred CCCeEEEECCCCCH---HHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQ---EVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.|+++|=-|++.|. .+..|++.|. +|+.+|.+++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~ 46 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDAD 46 (242)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence 57889999988773 4455666665 9999998865
No 447
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=23.76 E-value=1.2e+02 Score=24.33 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=28.8
Q ss_pred CCCCeEEEECCCCC---HHHHHHHHcCCCcEEEecCCCC----CCcEEEecCCC
Q 025148 109 SNESKALCIGARVG---QEVEALKRVGVSDSVGIDLVPY----PPLVIEGDFHR 155 (257)
Q Consensus 109 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~gvD~s~~----~~~~~~~d~~~ 155 (257)
..+++||=.|++.| .++..|++.|. +|+.+|.++. ....+..|+.+
T Consensus 12 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~Dv~~ 64 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDVNVSDHFKIDVTN 64 (269)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CTTSSEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhccCceeEEEecCCC
Confidence 45778998898755 23444555564 8999988765 23445555554
No 448
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=23.61 E-value=1.6e+02 Score=22.56 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=14.5
Q ss_pred HHHHHHHHhccCCcEEEEEe
Q 025148 179 KFVMEIERTLKPGGVCVLHV 198 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~~ 198 (257)
.+.+.+.+.++++|.++...
T Consensus 97 ~~~~~~~~~~~~~g~iv~~s 116 (223)
T 3uce_A 97 LAAKHGARYLKQGGSITLTS 116 (223)
T ss_dssp HHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHhhccCCeEEEEec
Confidence 45667777788888877664
No 449
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=23.12 E-value=60 Score=27.60 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=25.5
Q ss_pred CCeEEEECCCCCHHHHH--HHHc-CCCcEEEecCCCC
Q 025148 111 ESKALCIGARVGQEVEA--LKRV-GVSDSVGIDLVPY 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~--l~~~-~~~~v~gvD~s~~ 144 (257)
|++|+=||+|.+.+... |++. ...+|+-+|.++.
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~ 38 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET 38 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence 78999999999876544 5554 3458999998754
No 450
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=22.76 E-value=56 Score=32.30 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=28.4
Q ss_pred CeEEEECCCCCHHHHHHHHcCC-CcEEEecCCCC
Q 025148 112 SKALCIGARVGQEVEALKRVGV-SDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~ 144 (257)
.+++|+=||.|.+...|.+.|. .-+.++|+++.
T Consensus 541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~ 574 (1002)
T 3swr_A 541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDP 574 (1002)
T ss_dssp EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHH
T ss_pred CeEEEeccCccHHHHHHHHCCCCceEEEEECCHH
Confidence 4899999999999999988775 45789999966
No 451
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=22.44 E-value=10 Score=41.36 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=51.3
Q ss_pred hhcCCCCCeEEEECC--CCCHHHHHHHHcCCCcEEEecCCCCCCcEEEe-----------cCCCCCC--------CCCch
Q 025148 105 KKLLSNESKALCIGA--RVGQEVEALKRVGVSDSVGIDLVPYPPLVIEG-----------DFHRQPF--------DDETF 163 (257)
Q Consensus 105 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~~~~-----------d~~~~~~--------~~~~f 163 (257)
...+++|.+||=.|+ |.|..+..+++..+++|++++.+++...+... +..+..+ ....+
T Consensus 1662 ~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~Gv 1741 (2512)
T 2vz8_A 1662 RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGV 1741 (2512)
T ss_dssp TTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCE
T ss_pred HhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCc
Confidence 445688999999975 34666677777544599999876542111110 1111000 01124
Q ss_pred hHHHHHHhhccccHHHHHHHHHHhccCCcEEEEE
Q 025148 164 DFEFSNVFDHALYPDKFVMEIERTLKPGGVCVLH 197 (257)
Q Consensus 164 D~V~~~~l~h~~~~~~~l~~~~r~LkpgG~l~i~ 197 (257)
|+|+. .+. .+.++...++|++||.++..
T Consensus 1742 DvVld----~~g--~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1742 DLVLN----SLA--EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp EEEEE----CCC--HHHHHHHHTTEEEEEEEEEC
T ss_pred eEEEE----CCC--chHHHHHHHhcCCCcEEEEe
Confidence 44432 221 36788899999999998764
No 452
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=22.44 E-value=54 Score=26.60 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=22.0
Q ss_pred CeEEEECCCC--CHHHHHHHHcC-CCcEEEecCCCC
Q 025148 112 SKALCIGARV--GQEVEALKRVG-VSDSVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~--G~~~~~l~~~~-~~~v~gvD~s~~ 144 (257)
.+|.=||||. +.++..+.+.+ ..+|+++|.++.
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~ 42 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDR 42 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 5788899875 23344455543 358999998865
No 453
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=22.34 E-value=70 Score=28.03 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=24.7
Q ss_pred CCCeEEEECCCC-CHHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARV-GQEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
++.+|+=+|+|. |..+..++..-+.+|+++|.++.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~ 224 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA 224 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 467999999985 44444444433359999999976
No 454
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=22.15 E-value=42 Score=29.40 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=26.4
Q ss_pred CeEEEECCCCCHHHHHHHHcC--CCc----EEEecCCCC
Q 025148 112 SKALCIGARVGQEVEALKRVG--VSD----SVGIDLVPY 144 (257)
Q Consensus 112 ~~vLDiGcG~G~~~~~l~~~~--~~~----v~gvD~s~~ 144 (257)
-+|+|+=||.|.....+.+.| ..- |.++|+++.
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~ 49 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVD 49 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHH
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHH
Confidence 489999999999999998765 223 677998865
No 455
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=22.06 E-value=1.5e+02 Score=23.19 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCC---HHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVG---QEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.+.++|=.|++.| .++..|++.|. +|+.+|.++.
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~ 42 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPP 42 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChH
Confidence 4678888898755 23344455564 8999988765
No 456
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=22.04 E-value=46 Score=28.12 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHc---CCCcEEEecCCCC
Q 025148 110 NESKALCIGARVGQEVEALKRV---GVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~ 144 (257)
.|.+|.=||+| .++..+++. -+.+|+++|.++.
T Consensus 136 ~gktvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~ 171 (324)
T 3evt_A 136 TGQQLLIYGTG--QIGQSLAAKASALGMHVIGVNTTGH 171 (324)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred cCCeEEEECcC--HHHHHHHHHHHhCCCEEEEECCCcc
Confidence 46688889887 444444432 2359999998865
No 457
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=21.70 E-value=84 Score=21.73 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCHHHHHHH----HcCCCcEEEecCCCC
Q 025148 111 ESKALCIGARVGQEVEALK----RVGVSDSVGIDLVPY 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~----~~~~~~v~gvD~s~~ 144 (257)
+++|+=+|+| ..+..++ +.+ .+|+.+|.++.
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g-~~v~~~d~~~~ 38 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKG-HDIVLIDIDKD 38 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTT-CEEEEEESCHH
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCC-CeEEEEECCHH
Confidence 4688889874 5555444 335 48999998754
No 458
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=21.17 E-value=1.5e+02 Score=24.26 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=30.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHH----cCCCcEEEecCCCC--CCcEEEecCCCC
Q 025148 109 SNESKALCIGARVGQEVEALKR----VGVSDSVGIDLVPY--PPLVIEGDFHRQ 156 (257)
Q Consensus 109 ~~~~~vLDiGcG~G~~~~~l~~----~~~~~v~gvD~s~~--~~~~~~~d~~~~ 156 (257)
.++++||=.|+ +|.++..+++ .| .+|+++|.++. .+.++.+|+.+.
T Consensus 17 ~~~~~vlVtGa-tG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~Dl~d~ 68 (347)
T 4id9_A 17 RGSHMILVTGS-AGRVGRAVVAALRTQG-RTVRGFDLRPSGTGGEEVVGSLEDG 68 (347)
T ss_dssp ----CEEEETT-TSHHHHHHHHHHHHTT-CCEEEEESSCCSSCCSEEESCTTCH
T ss_pred cCCCEEEEECC-CChHHHHHHHHHHhCC-CEEEEEeCCCCCCCccEEecCcCCH
Confidence 34678999985 4777766654 35 49999998764 567788887653
No 459
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=20.63 E-value=96 Score=20.60 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=22.4
Q ss_pred CCeEEEECCCCCHHHHHHH----HcCCCcEEEecCCCC
Q 025148 111 ESKALCIGARVGQEVEALK----RVGVSDSVGIDLVPY 144 (257)
Q Consensus 111 ~~~vLDiGcG~G~~~~~l~----~~~~~~v~gvD~s~~ 144 (257)
+.+|+=+|+ |..+..++ +.+..+|+++|.++.
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~ 40 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLA 40 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHH
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence 468999998 55655544 345358999998864
No 460
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=20.41 E-value=2e+02 Score=19.14 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC
Q 025148 13 YFLISIFLTLPLLLLLLLFSLKAAVH 38 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (257)
--.+|++.++|.+.+..+-.+.....
T Consensus 16 Wkkis~~va~P~v~l~~~n~y~~~~e 41 (85)
T 1v54_G 16 WRFLTFGLALPSVALCTLNSWLHSGH 41 (85)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34778899999998888877655443
No 461
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=20.28 E-value=1.6e+02 Score=19.87 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCcEEEEEeccCCCcCcCCCCCcCChhHHHHhcccCCcEEEE
Q 025148 179 KFVMEIERTLKPGGVCVLHVALSKRADKYSANDLFSVKPLVKLFKRSEMVRVR 231 (257)
Q Consensus 179 ~~l~~~~r~LkpgG~l~i~~~~~~~~~~y~~~~~~~~~~~~~~f~~~~~~~~~ 231 (257)
-..++..+-|++|..|.+.+.+.. ....+.++.++.|+..+.
T Consensus 42 lktkkaL~~l~~Ge~L~Vl~dd~~-----------a~~dIp~~~~~~G~~v~~ 83 (97)
T 1je3_A 42 VATLEAMPQLKKGEILEVVSDCPQ-----------SINNIPLDARNHGYTVLD 83 (97)
T ss_dssp HHHHHHTTTCCSSCEEEEEEBCSS-----------SSCHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHcCCCCCEEEEEECCcc-----------hHHHHHHHHHHCCCEEEE
Confidence 344555667889999888774332 356778888888875544
No 462
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=20.01 E-value=1.8e+02 Score=23.12 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCC---HHHHHHHHcCCCcEEEecCCCC
Q 025148 110 NESKALCIGARVG---QEVEALKRVGVSDSVGIDLVPY 144 (257)
Q Consensus 110 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~gvD~s~~ 144 (257)
.++++|=.|++.| .++..|++.|. +|+.+|.++.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~ 46 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPET 46 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHH
Confidence 4678888888755 23445555564 8999988765
Done!