Query 025149
Match_columns 257
No_of_seqs 187 out of 1286
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04143 hypothetical protein; 100.0 2E-51 4.3E-56 367.8 21.8 218 3-254 34-262 (264)
2 cd02904 Macro_H2A_like Macro d 100.0 1.8E-47 4E-52 326.6 20.2 166 76-248 13-185 (186)
3 cd02907 Macro_Af1521_BAL_like 100.0 1.1E-43 2.3E-48 301.1 20.7 169 80-254 1-175 (175)
4 cd02908 Macro_Appr_pase_like M 100.0 2.2E-43 4.7E-48 296.7 21.0 160 82-251 1-164 (165)
5 PRK00431 RNase III inhibitor; 100.0 5.3E-43 1.1E-47 297.2 20.7 171 80-256 2-176 (177)
6 cd02905 Macro_GDAP2_like Macro 100.0 6.7E-43 1.4E-47 286.8 17.1 137 82-228 2-140 (140)
7 COG2110 Predicted phosphatase 100.0 6.6E-41 1.4E-45 284.0 18.2 171 81-255 3-176 (179)
8 cd02906 Macro_1 Macro domain, 100.0 3.1E-40 6.8E-45 273.0 15.3 139 82-225 1-147 (147)
9 cd02903 Macro_BAL_like Macro d 100.0 6.2E-39 1.3E-43 262.1 16.9 135 81-227 1-137 (137)
10 cd03330 Macro_2 Macro domain, 100.0 1.6E-34 3.5E-39 234.4 17.2 132 82-224 1-132 (133)
11 cd02900 Macro_Appr_pase Macro 100.0 5.3E-32 1.1E-36 231.6 16.5 148 81-228 19-186 (186)
12 KOG2633 Hismacro and SEC14 dom 100.0 1.5E-31 3.3E-36 228.5 14.3 165 72-252 22-194 (200)
13 smart00506 A1pp Appr-1"-p proc 100.0 8.9E-30 1.9E-34 204.6 15.7 131 82-220 1-133 (133)
14 cd02749 Macro Macro domain, a 100.0 6.2E-29 1.3E-33 203.4 16.1 136 82-224 1-146 (147)
15 PF01661 Macro: Macro domain; 100.0 3.1E-28 6.7E-33 191.4 10.2 116 103-220 1-118 (118)
16 PRK13341 recombination factor 99.9 3.3E-29 7.3E-34 251.6 -1.4 171 80-255 474-706 (725)
17 cd02901 Macro_Poa1p_like Macro 99.9 5.9E-23 1.3E-27 167.5 14.5 134 82-226 1-139 (140)
18 PHA02595 tk.4 hypothetical pro 99.7 5.4E-17 1.2E-21 135.3 15.4 149 82-241 2-153 (154)
19 PF14519 Macro_2: Macro-like d 99.4 1.9E-12 4.2E-17 116.2 10.5 145 81-229 42-215 (280)
20 cd03331 Macro_Poa1p_like_SNF2 98.8 3.9E-07 8.4E-12 75.9 14.6 135 83-222 2-147 (152)
21 TIGR02452 conserved hypothetic 97.8 0.00015 3.2E-09 65.6 9.3 168 80-248 55-265 (266)
22 COG4295 Uncharacterized protei 96.7 0.014 2.9E-07 51.3 9.4 78 177-254 199-281 (285)
23 PF10154 DUF2362: Uncharacteri 96.5 0.033 7.2E-07 54.7 11.8 114 143-256 371-503 (510)
24 PHA00684 hypothetical protein 79.9 21 0.00046 28.8 8.9 100 101-223 2-101 (128)
25 PHA03033 hypothetical protein; 72.5 14 0.0003 30.0 6.0 79 82-172 2-81 (142)
26 PF01073 3Beta_HSD: 3-beta hyd 52.4 39 0.00085 30.4 6.0 44 159-202 67-114 (280)
27 PLN02214 cinnamoyl-CoA reducta 49.4 31 0.00067 31.7 5.0 42 158-202 81-125 (342)
28 PF01831 Peptidase_C16: Peptid 47.8 6.8 0.00015 34.0 0.3 34 57-90 215-248 (249)
29 KOG1502 Flavonol reductase/cin 47.5 40 0.00086 31.6 5.3 45 159-203 79-128 (327)
30 PRK14827 undecaprenyl pyrophos 40.3 2.1E+02 0.0045 26.5 8.8 40 181-220 97-136 (296)
31 CHL00194 ycf39 Ycf39; Provisio 38.2 2E+02 0.0044 25.8 8.4 43 159-201 65-107 (317)
32 PRK14840 undecaprenyl pyrophos 35.9 1.6E+02 0.0036 26.5 7.2 39 182-220 53-91 (250)
33 PRK14837 undecaprenyl pyrophos 34.3 74 0.0016 28.3 4.7 40 181-220 36-75 (230)
34 COG2388 Predicted acetyltransf 33.8 57 0.0012 25.2 3.4 41 160-203 40-80 (99)
35 KOG4506 Uncharacterized conser 32.2 53 0.0011 31.6 3.6 65 144-208 417-484 (598)
36 cd00475 CIS_IPPS Cis (Z)-Isopr 31.9 91 0.002 27.5 4.9 39 182-220 31-69 (221)
37 PLN02657 3,8-divinyl protochlo 31.1 2.6E+02 0.0056 26.4 8.2 45 158-202 136-180 (390)
38 KOG1602 Cis-prenyltransferase 30.7 2.9E+02 0.0062 25.3 7.8 40 181-220 66-105 (271)
39 TIGR00055 uppS undecaprenyl di 30.5 94 0.002 27.6 4.7 39 182-220 30-68 (226)
40 PRK15181 Vi polysaccharide bio 30.4 81 0.0017 28.9 4.5 45 159-203 91-140 (348)
41 PRK14839 undecaprenyl pyrophos 29.9 4E+02 0.0087 23.9 8.6 39 182-220 40-78 (239)
42 PRK14828 undecaprenyl pyrophos 29.1 3.8E+02 0.0082 24.2 8.5 40 181-220 57-96 (256)
43 PF13460 NAD_binding_10: NADH( 28.7 88 0.0019 25.3 4.1 36 158-201 60-95 (183)
44 PRK14833 undecaprenyl pyrophos 27.8 1.1E+02 0.0024 27.2 4.7 39 182-220 35-73 (233)
45 PRK14842 undecaprenyl pyrophos 27.2 1.2E+02 0.0026 27.2 4.9 47 181-228 38-84 (241)
46 PLN02778 3,5-epimerase/4-reduc 26.5 1.1E+02 0.0025 27.4 4.7 44 158-201 57-108 (298)
47 PRK14841 undecaprenyl pyrophos 26.1 1.3E+02 0.0028 26.8 4.8 40 181-220 33-72 (233)
48 PLN02662 cinnamyl-alcohol dehy 25.5 2E+02 0.0044 25.4 6.2 44 159-202 77-125 (322)
49 PRK14831 undecaprenyl pyrophos 25.2 1.3E+02 0.0029 27.0 4.8 39 181-219 50-88 (249)
50 PRK14829 undecaprenyl pyrophos 24.9 1.5E+02 0.0032 26.6 5.0 39 182-220 45-83 (243)
51 PTZ00372 endonuclease 4-like p 23.9 4.2E+02 0.0092 25.7 8.2 59 179-239 215-274 (413)
52 PRK14838 undecaprenyl pyrophos 23.8 1.5E+02 0.0033 26.5 4.9 47 181-228 40-86 (242)
53 PRK14832 undecaprenyl pyrophos 23.8 1.5E+02 0.0032 26.8 4.8 40 181-220 48-87 (253)
54 PF01255 Prenyltransf: Putativ 23.4 1.6E+02 0.0034 25.8 4.8 39 182-220 25-63 (223)
55 PRK10240 undecaprenyl pyrophos 23.1 1.6E+02 0.0034 26.2 4.8 45 182-227 24-68 (229)
56 PF05185 PRMT5: PRMT5 arginine 22.7 57 0.0012 31.8 2.1 27 80-106 240-266 (448)
57 PLN02725 GDP-4-keto-6-deoxyman 22.6 1.6E+02 0.0034 25.9 4.8 43 158-201 49-98 (306)
58 COG0648 Nfo Endonuclease IV [D 21.9 5.3E+02 0.012 23.6 8.1 64 159-229 68-132 (280)
59 PRK14834 undecaprenyl pyrophos 21.7 1.9E+02 0.0041 26.1 5.0 39 182-220 45-83 (249)
60 PLN02986 cinnamyl-alcohol dehy 21.5 2.5E+02 0.0053 25.1 5.9 44 159-202 78-126 (322)
61 PRK14835 undecaprenyl pyrophos 21.1 1.9E+02 0.0042 26.4 5.1 39 182-220 72-110 (275)
62 PF15162 DUF4580: Domain of un 20.7 2.2E+02 0.0047 24.0 4.8 58 196-255 39-100 (162)
63 COG0621 MiaB 2-methylthioadeni 20.6 3.5E+02 0.0076 26.5 7.0 94 150-249 149-250 (437)
64 PTZ00325 malate dehydrogenase; 20.1 2.6E+02 0.0057 25.9 5.9 44 158-201 76-122 (321)
65 PTZ00349 dehydrodolichyl dipho 20.0 1.8E+02 0.0039 27.3 4.7 40 181-220 49-88 (322)
No 1
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=2e-51 Score=367.82 Aligned_cols=218 Identities=31% Similarity=0.498 Sum_probs=195.0
Q ss_pred hHHHHHhhcCCCCCCcccccCCCCccceeecchhHHHHhhhccccccCCCcceeecceeeeccCCCCCCCceeecCCCce
Q 025149 3 TRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAA 82 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~n~~ 82 (257)
+|+|+|-|| +.+.|..+..++ +.+||+||+.+..+++++ +..+.. ++ .+.+
T Consensus 34 ~~~~~r~l~-n~r~p~~~~~~~-----l~~~~~~l~~~~~~~~~~--------~~~~~~--------------~~-~~~~ 84 (264)
T PRK04143 34 QQDLLRALA-NVRPALPLSDEY-----LNLQDAYLQDENAERGVV--------DLKDLQ--------------PI-KYDN 84 (264)
T ss_pred HHHHHHHHh-ccCCCCCCCHHH-----HHHHHHHHHHHHhhcCcc--------cHHhcC--------------cc-CCCE
Confidence 689999999 999999999888 999999999999998885 333431 22 3589
Q ss_pred EEEEEcccceeccCCCCcEEEEcCCCCCCCC-----CcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCC
Q 025149 83 LVINKGDITKWSVDGSSDAIVNPANERMLGG-----GGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKL 157 (257)
Q Consensus 83 I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~-----gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L 157 (257)
|.||+||||++++ ||||||||+.|.++ |||+++|+++||++|+++|+++++.+ ++.+++|++++|++|+|
T Consensus 85 i~i~~GDIt~l~v----DAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~-g~~~~~G~a~iT~~~nL 159 (264)
T PRK04143 85 IFLWQGDITRLKV----DAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQ-GRKEATGQAKITRAYNL 159 (264)
T ss_pred EEEEECCcceeec----CEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHc-CCCCCCceEEEecCCCC
Confidence 9999999999976 99999999999865 89999999999999999999987543 45789999999999999
Q ss_pred CCCeEEEEeCCccCCC---CCcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHHhcC---C
Q 025149 158 PASHVIHTVGPIYDAD---SNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAND---F 231 (257)
Q Consensus 158 ~~k~IIH~V~P~~~~~---~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl~~---l 231 (257)
|||||||+|||.|+.+ ....+.|++||++||+.|.+++++|||||+||||+||||+++||++|++++++|++. .
T Consensus 160 p~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~ 239 (264)
T PRK04143 160 PAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSK 239 (264)
T ss_pred CCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999873 245789999999999999999999999999999999999999999999999999973 3
Q ss_pred CeEEEEecChHHHHHHHHHHHHH
Q 025149 232 KEVHFVLFSDDIYNVWLNKAKEL 254 (257)
Q Consensus 232 ~~V~fv~~~~~~~~~f~~~~~~~ 254 (257)
.+|+|++|+++.++.|.+.++..
T Consensus 240 ~~Vif~vf~~~d~~iy~~~l~~~ 262 (264)
T PRK04143 240 LKVVFNVFTDEDLELYQKALNKE 262 (264)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHh
Confidence 58999999999999999988754
No 2
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=1.8e-47 Score=326.56 Aligned_cols=166 Identities=27% Similarity=0.457 Sum_probs=152.8
Q ss_pred ecCCCceEEEEEccc--ceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEee
Q 025149 76 KLSESAALVINKGDI--TKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITP 153 (257)
Q Consensus 76 ~~~~n~~I~I~~GDI--t~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ 153 (257)
....+.+|.||+||| |+++| |||||+||++|.+++||++||+++||++|++||+++.+. .+++++|++++|+
T Consensus 13 ~~~~~~~i~i~~gDI~~t~~~v----DaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~~~iT~ 86 (186)
T cd02904 13 SLFLGQKLSLVQSDISIGSIDV----EGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKS--NGPLEIAGAAVSQ 86 (186)
T ss_pred hhcCCCEEEEEECCccccceec----cEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHh--cCCCCCCCEEEcc
Confidence 333478999999999 98876 999999999999999999999999999999999987532 2489999999999
Q ss_pred CCCCCCCeEEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHHhc----
Q 025149 154 GFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN---- 229 (257)
Q Consensus 154 ag~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl~---- 229 (257)
+|+||||||||+|+|.|..+ .+++.|++||++||++|++++++|||||+||||++|||++++|++|+++|++|++
T Consensus 87 a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~ 165 (186)
T cd02904 87 AHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMS 165 (186)
T ss_pred CCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999764 4578999999999999999999999999999999999999999999999999985
Q ss_pred -CCCeEEEEecChHHHHHHH
Q 025149 230 -DFKEVHFVLFSDDIYNVWL 248 (257)
Q Consensus 230 -~l~~V~fv~~~~~~~~~f~ 248 (257)
++++|+||+|+++.++.|.
T Consensus 166 ~~l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 166 SSIKQIYFVLFDSESIGIYV 185 (186)
T ss_pred CCccEEEEEECCHHHHHHhh
Confidence 4789999999999999984
No 3
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=1.1e-43 Score=301.06 Aligned_cols=169 Identities=36% Similarity=0.553 Sum_probs=157.3
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCCCC
Q 025149 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (257)
Q Consensus 80 n~~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~~ 159 (257)
+.+|++++|||+++++ ||||||+|+++.+++|++++|++++|+++++||+++++. .+++++|++++|++|+|+|
T Consensus 1 ~~~i~i~~GdI~~~~~----DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~--~g~~~~G~~~~T~~~~L~~ 74 (175)
T cd02907 1 GVTLSVIKGDITRFPV----DAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRK--NGPVPTGEVVVTSAGKLPC 74 (175)
T ss_pred CcEEEEEECCcceeec----CEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHh--cCCCCCCcEEEecCCCCCC
Confidence 4789999999999976 999999999999999999999999999999999987643 3479999999999999999
Q ss_pred CeEEEEeCCccCCCC--CcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHHhc----CCCe
Q 025149 160 SHVIHTVGPIYDADS--NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN----DFKE 233 (257)
Q Consensus 160 k~IIH~V~P~~~~~~--~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl~----~l~~ 233 (257)
|||||+|+|.|+.+. +..+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|+. .+++
T Consensus 75 k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~ 154 (175)
T cd02907 75 KYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKE 154 (175)
T ss_pred CEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccE
Confidence 999999999998864 4578999999999999999999999999999999999999999999999999986 4789
Q ss_pred EEEEecChHHHHHHHHHHHHH
Q 025149 234 VHFVLFSDDIYNVWLNKAKEL 254 (257)
Q Consensus 234 V~fv~~~~~~~~~f~~~~~~~ 254 (257)
|+||+|+++.+++|+++++.+
T Consensus 155 I~~v~~~~~~~~~~~~al~~~ 175 (175)
T cd02907 155 IYLVDYDEQTVEAFEKALEVF 175 (175)
T ss_pred EEEEECCHHHHHHHHHHHhhC
Confidence 999999999999999988763
No 4
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=2.2e-43 Score=296.70 Aligned_cols=160 Identities=54% Similarity=0.902 Sum_probs=151.3
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCCCCCe
Q 025149 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (257)
Q Consensus 82 ~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~~k~ 161 (257)
+|+|++|||+++++ |||||++|+++.++|||+++|++++|++|++||+++. ++++|++++|++|+|+|+|
T Consensus 1 ~i~i~~GdI~~~~~----daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~------~~~~G~~v~T~~~~l~~~~ 70 (165)
T cd02908 1 KIEIIQGDITKLEV----DAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELR------GCPTGEAVITSGYNLPAKY 70 (165)
T ss_pred CeEEEecccceeec----CEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCCEEEeeCCCCCCCE
Confidence 48899999999976 9999999999999999999999999999999999875 5799999999999999999
Q ss_pred EEEEeCCccCCCC-CcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHHhc---CCCeEEEE
Q 025149 162 VIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN---DFKEVHFV 237 (257)
Q Consensus 162 IIH~V~P~~~~~~-~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl~---~l~~V~fv 237 (257)
|||+|+|.|+.+. ++.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++ .+++|+||
T Consensus 71 IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~l~~V~~v 150 (165)
T cd02908 71 VIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFV 150 (165)
T ss_pred EEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999999998653 5678999999999999999999999999999999999999999999999999996 58899999
Q ss_pred ecChHHHHHHHHHH
Q 025149 238 LFSDDIYNVWLNKA 251 (257)
Q Consensus 238 ~~~~~~~~~f~~~~ 251 (257)
+++++++++|++++
T Consensus 151 ~~~~~~~~~f~~~l 164 (165)
T cd02908 151 CFSEEDYEIYEKAL 164 (165)
T ss_pred eCCHHHHHHHHHHh
Confidence 99999999999875
No 5
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=5.3e-43 Score=297.22 Aligned_cols=171 Identities=47% Similarity=0.771 Sum_probs=159.3
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCCCC
Q 025149 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (257)
Q Consensus 80 n~~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~~ 159 (257)
+.+|+|++|||+++++ ||||||+|+++.++|||+++|++++|++++++|+++++. .+++++|++++|++|+|+|
T Consensus 2 ~~~i~i~~Gdi~~~~~----daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~--~~~l~~G~~~~T~~~~l~~ 75 (177)
T PRK00431 2 GMRIEVVQGDITELEV----DAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQ--QGPCPTGEAVITSAGRLPA 75 (177)
T ss_pred CcEEEEEeCCcccccC----CEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeEEEecCCCCCC
Confidence 4789999999999865 999999999999999999999999999999999988643 3589999999999999999
Q ss_pred CeEEEEeCCccCCCC-CcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHHhc---CCCeEE
Q 025149 160 SHVIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN---DFKEVH 235 (257)
Q Consensus 160 k~IIH~V~P~~~~~~-~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl~---~l~~V~ 235 (257)
|||||+|+|.|+.+. ...+.|++||++||+.|++++++|||||+||||++|+|++++|++|++++++|++ .+++|+
T Consensus 76 ~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~l~~I~ 155 (177)
T PRK00431 76 KYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEVY 155 (177)
T ss_pred CEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCCcCEEE
Confidence 999999999998754 3478999999999999999999999999999999999999999999999999975 578999
Q ss_pred EEecChHHHHHHHHHHHHHhh
Q 025149 236 FVLFSDDIYNVWLNKAKELLE 256 (257)
Q Consensus 236 fv~~~~~~~~~f~~~~~~~~~ 256 (257)
||+++++.+++|.++|+...+
T Consensus 156 ~v~~~~~~~~~f~~~l~~~~~ 176 (177)
T PRK00431 156 FVCYDEEAYRLYERLLTQQGD 176 (177)
T ss_pred EEECCHHHHHHHHHHHHHhhc
Confidence 999999999999999998765
No 6
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=6.7e-43 Score=286.78 Aligned_cols=137 Identities=42% Similarity=0.637 Sum_probs=129.8
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCCCCCe
Q 025149 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (257)
Q Consensus 82 ~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~~k~ 161 (257)
+|.|++||||+++| |||||++|++|.+++||+++|++++|++|++||++.. ++++|++++|++|+|||||
T Consensus 2 ki~l~~GdIt~~~v----DaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~------~~~~G~~~~T~~~~L~~k~ 71 (140)
T cd02905 2 RIVLWEGDICNLNV----DAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLG------GCRTGEAKLTKGYNLPARF 71 (140)
T ss_pred eEEEEeCccCcccC----CEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCcEEEecCCCCCccE
Confidence 68999999999976 9999999999999999999999999999999999864 6899999999999999999
Q ss_pred EEEEeCCccCCCCC--cHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHHh
Q 025149 162 VIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFA 228 (257)
Q Consensus 162 IIH~V~P~~~~~~~--~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl 228 (257)
|||+|+|.|+.+.. .++.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|+
T Consensus 72 VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 72 IIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred EEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999997653 36899999999999999999999999999999999999999999999999995
No 7
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=6.6e-41 Score=284.00 Aligned_cols=171 Identities=46% Similarity=0.746 Sum_probs=159.6
Q ss_pred ceEEEEEcccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCCCCC
Q 025149 81 AALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPAS 160 (257)
Q Consensus 81 ~~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~~k 160 (257)
..|.+++||||++.+ |||||+||+++.++|||+.||++++|++|+++|++....+++.+.++|++++|++++|+++
T Consensus 3 ~~i~~v~GDIt~~~~----daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~ 78 (179)
T COG2110 3 TNIRVVQGDITKLEA----DAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAK 78 (179)
T ss_pred ceEEEEecccceeeh----hheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCC
Confidence 579999999999976 9999999999999999999999999999999999987555566788999999999999999
Q ss_pred eEEEEeCCccCCCC-CcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEE
Q 025149 161 HVIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN--DFKEVHFV 237 (257)
Q Consensus 161 ~IIH~V~P~~~~~~-~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl~--~l~~V~fv 237 (257)
||||+|+|.|..+. ...+.|..||+++|++|.+++++|||||+||||++|+|+++++++++.++++|+. ++..|+||
T Consensus 79 ~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~~~~~~v~~v 158 (179)
T COG2110 79 YVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPEASIETVIFV 158 (179)
T ss_pred EEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhcccccccEEEEE
Confidence 99999999998865 3468999999999999999999999999999999999999999999999999996 68899999
Q ss_pred ecChHHHHHHHHHHHHHh
Q 025149 238 LFSDDIYNVWLNKAKELL 255 (257)
Q Consensus 238 ~~~~~~~~~f~~~~~~~~ 255 (257)
+|+++.+..|...+.+.+
T Consensus 159 ~~~~e~~~~~~~~~~~~~ 176 (179)
T COG2110 159 VYGEETARVYEELLSTHL 176 (179)
T ss_pred ecCchhHHHHHHHHhhhc
Confidence 999999999999887765
No 8
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=3.1e-40 Score=273.02 Aligned_cols=139 Identities=45% Similarity=0.707 Sum_probs=127.4
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCC-----CCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCC
Q 025149 82 ALVINKGDITKWSVDGSSDAIVNPANERMLG-----GGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK 156 (257)
Q Consensus 82 ~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~-----~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~ 156 (257)
+|++|+||||++++ |||||++|++|.+ +|||+++|++++|++|++||+++.+. .++.+++|++++|++|+
T Consensus 1 ~i~v~~GdIt~~~~----DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~-~g~~~~~G~a~~T~~~~ 75 (147)
T cd02906 1 SIYLWKGDITTLKV----DAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTK-QGREEPTGQAKITPGYN 75 (147)
T ss_pred CeEEEECCcCCccC----CEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHh-cCCCCCCCeEEEEeCCC
Confidence 47899999999976 9999999999974 48999999999999999999988743 34578999999999999
Q ss_pred CCCCeEEEEeCCccCCCC---CcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHH
Q 025149 157 LPASHVIHTVGPIYDADS---NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVK 225 (257)
Q Consensus 157 L~~k~IIH~V~P~~~~~~---~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~ 225 (257)
|||+||||+|+|.|..+. +..+.|++||++||+.|.+++++|||||+||||++|||++++|++++++++
T Consensus 76 L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 76 LPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred CCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 999999999999998754 356899999999999999999999999999999999999999999999985
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=6.2e-39 Score=262.14 Aligned_cols=135 Identities=33% Similarity=0.460 Sum_probs=126.2
Q ss_pred ceEEEEEcccceeccCCCCcEEEEcCCCC-CCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccC-CCcEEEeeCCCCC
Q 025149 81 AALVINKGDITKWSVDGSSDAIVNPANER-MLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCP-IGEARITPGFKLP 158 (257)
Q Consensus 81 ~~I~I~~GDIt~~~v~~~~DaIVNaaN~~-l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~-~G~v~iT~ag~L~ 158 (257)
.+|+|++|||+++++ |||||++|+. +.++|||+++|++++|++++++|+++.. ++ +|++++|++|+||
T Consensus 1 ~~i~i~~GdI~~~~~----DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~~------~~~~G~~~vT~~~~L~ 70 (137)
T cd02903 1 LTLQVAKGDIEDETT----DVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKL------GQTVGSVIVTKGGNLP 70 (137)
T ss_pred CEEEEEeCccCCccC----CEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHcC------CCCCCeEEEecCCCCC
Confidence 379999999999976 9999999999 7899999999999999999999998762 33 6999999999999
Q ss_pred CCeEEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHH
Q 025149 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEF 227 (257)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~f 227 (257)
||||||+++|.|..+ ..+.|++||++||+.|++++++|||||+||||++|||++++|++|++++++|
T Consensus 71 ~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 71 CKYVYHVVLPNWSNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999864 5789999999999999999999999999999999999999999999999986
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=100.00 E-value=1.6e-34 Score=234.35 Aligned_cols=132 Identities=39% Similarity=0.558 Sum_probs=122.7
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCCCCCe
Q 025149 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (257)
Q Consensus 82 ~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~~k~ 161 (257)
.|++++|||+++++ |||||++|+++.+++|++++|++++|++++++|++.. ++++|++++|++++|+|||
T Consensus 1 ~i~i~~GdI~~~~~----DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~------~~~~G~~~~t~~~~l~~k~ 70 (133)
T cd03330 1 ELEVVQGDITKVDA----DAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKA------PIPVGEAVITGAGDLPARY 70 (133)
T ss_pred CEEEEEcccccccC----CEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcC------CCCCCeEEEEeCCCCCCCE
Confidence 37899999999976 9999999999999999999999999999999998742 6889999999999999999
Q ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHH
Q 025149 162 VIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTV 224 (257)
Q Consensus 162 IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai 224 (257)
|||+++|.+.. ..+.+.|++||+++|+.|.+++++|||||+||||++|+|+++++++|.+++
T Consensus 71 Iih~~~~~~~~-~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 71 VIHAATMEEPG-RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred EEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 99999997655 345679999999999999999999999999999999999999999999886
No 11
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=100.00 E-value=5.3e-32 Score=231.59 Aligned_cols=148 Identities=22% Similarity=0.199 Sum_probs=123.7
Q ss_pred ceEEEEEcccceecc------CCCCcEEEEcCCCCCCCCCcHHHHHHHHhC-hHHHHHHhhcCccCCCcccCCCcEEEee
Q 025149 81 AALVINKGDITKWSV------DGSSDAIVNPANERMLGGGGADGAIHRAAG-PELREACCKVPEVRPEVRCPIGEARITP 153 (257)
Q Consensus 81 ~~I~I~~GDIt~~~v------~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG-~~l~~e~~~~~~~~~~~~~~~G~v~iT~ 153 (257)
..+.+++|+++++.. .+++|+||||||+.+.++||+++||++++| ++|+++|++.+..+..+.+++|++++|+
T Consensus 19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~ 98 (186)
T cd02900 19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVP 98 (186)
T ss_pred CCeEEEeCCceecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEec
Confidence 345566666665441 123699999999999999999999999999 6899999765433333589999999999
Q ss_pred CCCCC----------CCeEEEEeCCccC-CCCCcHHHHHHHHHHHHHHHHHc--CCcEEEecccccCCCCCCHHHHHHHH
Q 025149 154 GFKLP----------ASHVIHTVGPIYD-ADSNPEASLRNAYKNSLSVAKEN--NIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 154 ag~L~----------~k~IIH~V~P~~~-~~~~~~~~L~~~y~~~L~~A~~~--~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
+++|+ +|||||++++.+. ......+.|++||+++|+.|.++ +++|||||+||||.+|+|++++|++|
T Consensus 99 ~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m 178 (186)
T cd02900 99 LGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQM 178 (186)
T ss_pred CCCCccccccccccCCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHH
Confidence 99999 9999999876554 22235679999999999999887 89999999999999999999999999
Q ss_pred HHHHHHHh
Q 025149 221 LSTVKEFA 228 (257)
Q Consensus 221 l~ai~~fl 228 (257)
+.++++|.
T Consensus 179 ~~ai~~f~ 186 (186)
T cd02900 179 AFAIRLFN 186 (186)
T ss_pred HHHHHHhC
Confidence 99999884
No 12
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.5e-31 Score=228.49 Aligned_cols=165 Identities=40% Similarity=0.676 Sum_probs=148.7
Q ss_pred CceeecCC--CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcE
Q 025149 72 DGHFKLSE--SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEA 149 (257)
Q Consensus 72 ~~~f~~~~--n~~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v 149 (257)
.+.|++.+ |..|.+|+||++.+++ |||| +.+++|++.+|++++|+++.+||..+- .|++|.+
T Consensus 22 l~~f~~~~~~~~~i~lwr~d~~~l~v----~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~------~c~tG~a 85 (200)
T KOG2633|consen 22 LEVFKIDKPDNGGISLWRGDGKTLEV----DAVV------LLGGKGVDEAIHRAAGPELPLECAYLH------GCRTGAA 85 (200)
T ss_pred cchhhccCccccCeeEeecccccccc----eeee------eccCcchhHHHHHhcCCcchHHHHhhc------CCCCCee
Confidence 36777766 7899999999999987 9998 889999999999999999999999874 5999999
Q ss_pred EEeeCCCCCCCeEEEEeCCccCCCCCcH-HHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHHh
Q 025149 150 RITPGFKLPASHVIHTVGPIYDADSNPE-ASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFA 228 (257)
Q Consensus 150 ~iT~ag~L~~k~IIH~V~P~~~~~~~~~-~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl 228 (257)
++|++++||+|+|||+|+|.|.....++ ..|..||++||.+|.+++++|||||+|++|.+|||++.+|++.+++++.|+
T Consensus 86 k~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f 165 (200)
T KOG2633|consen 86 KSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFF 165 (200)
T ss_pred EecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998866332 359999999999999999999999999999999999999999999999998
Q ss_pred c-----CCCeEEEEecChHHHHHHHHHHH
Q 025149 229 N-----DFKEVHFVLFSDDIYNVWLNKAK 252 (257)
Q Consensus 229 ~-----~l~~V~fv~~~~~~~~~f~~~~~ 252 (257)
. .++.+.|+.++++.|..|..++.
T Consensus 166 ~~~~d~~l~~~~f~~~d~e~~~~~l~~~~ 194 (200)
T KOG2633|consen 166 VKNKDSSLKTVPFLDYDSESYGAYLPEYA 194 (200)
T ss_pred hhCCCceEEEEEEeccCCchHHHHHhhhc
Confidence 5 35678899999999998876543
No 13
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.97 E-value=8.9e-30 Score=204.64 Aligned_cols=131 Identities=45% Similarity=0.629 Sum_probs=118.7
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHH-HHHHhhcCccCCCcccCCCcEEEeeCCCCCCC
Q 025149 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPEL-REACCKVPEVRPEVRCPIGEARITPGFKLPAS 160 (257)
Q Consensus 82 ~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l-~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~~k 160 (257)
.|++++|||+++++ |+|||++|+++.+++|++++|++++|+++ ++++++.. ++.+++|++.+|++++++++
T Consensus 1 ~i~~~~Gdi~~~~~----d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~ 72 (133)
T smart00506 1 ILKVVKGDITKPRA----DAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLA----GGECPVGTAVVTEGGNLPAK 72 (133)
T ss_pred CeEEEeCCCCcccC----CEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhc----CCCcCCccEEEecCCCCCCC
Confidence 37899999999875 99999999999999999999999999996 66666543 23799999999999999999
Q ss_pred eEEEEeCCccCCC-CCcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 161 HVIHTVGPIYDAD-SNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 161 ~IIH~V~P~~~~~-~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
||||+++|.|... ....+.|++||++||+.|.+++++||+||+||||.+|+|++++++++
T Consensus 73 ~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 73 YVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred EEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 9999999999876 35679999999999999999999999999999999999999999864
No 14
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.96 E-value=6.2e-29 Score=203.36 Aligned_cols=136 Identities=41% Similarity=0.623 Sum_probs=124.7
Q ss_pred eEEEEEcccce-eccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCCC-C
Q 025149 82 ALVINKGDITK-WSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLP-A 159 (257)
Q Consensus 82 ~I~I~~GDIt~-~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~-~ 159 (257)
.|++++|||++ .++ |+|||++|+.+.+++|++.+|++++|+++++++++..+. ..+++|++.+|++++++ +
T Consensus 1 ~i~~~~GDi~~~~~~----d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~---~~~~~G~~~~t~~~~~~~~ 73 (147)
T cd02749 1 KIKVVSGDITKPLGS----DAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKE---LELQVGEAVLTKGYNLDGA 73 (147)
T ss_pred CEEEEECCCCCCCCC----CEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhcc---cCCCCCCEEECcCCCCCcC
Confidence 37899999999 654 999999999999999999999999999999999987632 23789999999999999 9
Q ss_pred CeEEEEeCCccCCCC--CcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCC------CHHHHHHHHHHHH
Q 025149 160 SHVIHTVGPIYDADS--NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGY------PYEEAAAVALSTV 224 (257)
Q Consensus 160 k~IIH~V~P~~~~~~--~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~------p~~~~A~~~l~ai 224 (257)
+||||+++|.|.... ...+.|++||++||..|.+++++|||||.||||.+|+ |++.++++|++++
T Consensus 74 ~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 74 KYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred CEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 999999999998764 3568999999999999999999999999999999999 9999999999875
No 15
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.95 E-value=3.1e-28 Score=191.41 Aligned_cols=116 Identities=43% Similarity=0.734 Sum_probs=106.9
Q ss_pred EEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCCCCCeEEEEeCCccCCC--CCcHHHH
Q 025149 103 VNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDAD--SNPEASL 180 (257)
Q Consensus 103 VNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~~k~IIH~V~P~~~~~--~~~~~~L 180 (257)
||++|.++.+++||+++|++++|++++++|+++.+. ++++++|++++|++++|+++||||+|+|.|... ..+.+.|
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~--~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L 78 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKK--GGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEAL 78 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHH--HHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhcc--cCcccCCCeeeecCCCccccceEEEecceeccccccccHHHH
Confidence 899999999999999999999999999999887532 236899999999999999999999999999743 3568999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
++||++||+.|.+++++||+||+||||++|+|+++++++|
T Consensus 79 ~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 79 ESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999999986
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.94 E-value=3.3e-29 Score=251.60 Aligned_cols=171 Identities=23% Similarity=0.259 Sum_probs=153.8
Q ss_pred CceEEEEE----cccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHH---HHHHhhcCcc--------------
Q 025149 80 SAALVINK----GDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPEL---REACCKVPEV-------------- 138 (257)
Q Consensus 80 n~~I~I~~----GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l---~~e~~~~~~~-------------- 138 (257)
+..+.+++ ||||...+ |+|||+||+.+.+++|++++|+++||+++ +++|+++.++
T Consensus 474 ~~~~~~~~~~~~~dit~~~~----d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~ 549 (725)
T PRK13341 474 GERLAILRDRLWSDITWQRH----DRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLLD 549 (725)
T ss_pred ccHHHHHHHHHhcccccccc----ceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccccc
Confidence 57899999 99999876 99999999999999999999999999999 8888764211
Q ss_pred ------CC----------CcccCCCcEEEe------------eCCCCCCCeEEEEeCCccCCCCCcHHHHHHHHHHHHHH
Q 025149 139 ------RP----------EVRCPIGEARIT------------PGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSV 190 (257)
Q Consensus 139 ------~~----------~~~~~~G~v~iT------------~ag~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~ 190 (257)
+. .+++++|++++| ++|+|+|+||||+|||.|+.+.. .+.|.+||+++|..
T Consensus 550 ~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~~ 628 (725)
T PRK13341 550 GSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALLE 628 (725)
T ss_pred cchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHHH
Confidence 00 247999999999 99999999999999999987653 56899999999999
Q ss_pred HHHcCCc----------EEEecccccCCCCCCHHHHHHHHHHHHHHHhcC---CCeEEEEecChHHHHHHHHHHHHHh
Q 025149 191 AKENNIQ----------YIAFTAISCGVYGYPYEEAAAVALSTVKEFAND---FKEVHFVLFSDDIYNVWLNKAKELL 255 (257)
Q Consensus 191 A~~~~~~----------SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl~~---l~~V~fv~~~~~~~~~f~~~~~~~~ 255 (257)
|++++++ |||||+||||++|||.+++++++++++.+|+++ ..++.++.++++.+..|.+.+.++|
T Consensus 629 Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 706 (725)
T PRK13341 629 AEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIKRWLAQGPDYRQALATNLEEERICNLDEELTRIL 706 (725)
T ss_pred HHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHHHHHhcCCcHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 9999999 999999999999999999999999999999964 3467799999999999999999887
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.90 E-value=5.9e-23 Score=167.50 Aligned_cols=134 Identities=19% Similarity=0.272 Sum_probs=112.8
Q ss_pred eEEEEEccccee-ccCCCCcEEEEcCCCCCCCCCcHHHHHHHHh--C-hHHHHHHhhcCccCCCcccCCCcEEE-eeCCC
Q 025149 82 ALVINKGDITKW-SVDGSSDAIVNPANERMLGGGGADGAIHRAA--G-PELREACCKVPEVRPEVRCPIGEARI-TPGFK 156 (257)
Q Consensus 82 ~I~I~~GDIt~~-~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aa--G-~~l~~e~~~~~~~~~~~~~~~G~v~i-T~ag~ 156 (257)
+|++++|||++. ++ |+|||++|..+.+++|++.+|+++. + .++++.|++. .+..|++.+ +.+++
T Consensus 1 ~i~~v~GDi~~~~~~----d~Iv~~~N~~~~mG~Gia~~i~~~~p~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~ 69 (140)
T cd02901 1 MITYVKGDLLHAPEA----AALAHAVNCDGVMGKGIALQFKEKFPEFVEEYRAACKKK-------ELLLGGVAVLERGSS 69 (140)
T ss_pred CeEEEcCccccCCCC----CEEEEEEcCCCccChHHHHHHHHHCcHHHHHHHHHHHhc-------CCCCCcEEEEecCCC
Confidence 478999999998 55 9999999999999999999999973 2 3455666553 244566555 55677
Q ss_pred CCCCeEEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHH
Q 025149 157 LPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKE 226 (257)
Q Consensus 157 L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~ 226 (257)
+++++|+|+++|.|.+.....+.|++|++++++.|.+++++||+||.||||.+|+|++++++++.+.+.+
T Consensus 70 ~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~ 139 (140)
T cd02901 70 LVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD 139 (140)
T ss_pred CCceEEEEeeccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence 8899999999998876555678999999999999999999999999999999999999999998777643
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.75 E-value=5.4e-17 Score=135.27 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=118.1
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEE-eeCCCCCCC
Q 025149 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARI-TPGFKLPAS 160 (257)
Q Consensus 82 ~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~i-T~ag~L~~k 160 (257)
.|.+++|||++... ...++|||++|....+|+|++.+|.++++ ++.++.++.-. +...+.|++.+ +.+++.+.+
T Consensus 2 ~i~~v~GDl~~~~~-~~~~~i~h~~N~~g~mG~GIA~~~k~~~P-~~~~~y~~~~~---~~~~~lG~~~~~~~~~~~~~~ 76 (154)
T PHA02595 2 IVDYIKGDIVALFL-QGKGNIAHGCNCFHTMGSGIAGQLAKAFP-QILEADKLTTE---GDVEKLGTFSVWEKYVGGHKA 76 (154)
T ss_pred eEEEECCccccccc-CCCceEEEeeCCCCcCChHHHHHHHHHcC-hHHHHHHHHhc---CCccccceEEEEEeeccCCCE
Confidence 37889999988743 13469999999999999999999999995 66666554431 23577899976 566777889
Q ss_pred eEEEEeCCccCCCCC-cHHHHHHHHHHHHHHHHHcCC-cEEEecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 025149 161 HVIHTVGPIYDADSN-PEASLRNAYKNSLSVAKENNI-QYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVHFVL 238 (257)
Q Consensus 161 ~IIH~V~P~~~~~~~-~~~~L~~~y~~~L~~A~~~~~-~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl~~l~~V~fv~ 238 (257)
||+|.++- |+.+.. +.+.|++|+++..+.+.+++. .|||||.||||.+|.|++++..++-+. ++.+ +|.++.
T Consensus 77 ~I~nl~tq-~~~~~~~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~----~~~~-~i~Vy~ 150 (154)
T PHA02595 77 YCFNLYTQ-FDPGPNLEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA----TPDI-DIVVVE 150 (154)
T ss_pred EEEEEecc-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh----cCCC-cEEEEE
Confidence 99999876 766543 456799999999999999997 999999999999999999999887654 3344 477776
Q ss_pred cCh
Q 025149 239 FSD 241 (257)
Q Consensus 239 ~~~ 241 (257)
|++
T Consensus 151 ~~~ 153 (154)
T PHA02595 151 YEK 153 (154)
T ss_pred ecC
Confidence 654
No 19
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=99.39 E-value=1.9e-12 Score=116.15 Aligned_cols=145 Identities=23% Similarity=0.250 Sum_probs=90.9
Q ss_pred ceEEEEEcccceecc---------CCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHH-HHHHhhcCccCCCcccCCCcEE
Q 025149 81 AALVINKGDITKWSV---------DGSSDAIVNPANERMLGGGGADGAIHRAAGPEL-REACCKVPEVRPEVRCPIGEAR 150 (257)
Q Consensus 81 ~~I~I~~GDIt~~~v---------~~~~DaIVNaaN~~l~~~gGvs~aI~~aaG~~l-~~e~~~~~~~~~~~~~~~G~v~ 150 (257)
..+.+..|++..+.- ..+.|+||.||||...++||.+.+|.++.|.+- +..+++.. .++..++|++-
T Consensus 42 ~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l---~~~y~pvGs~t 118 (280)
T PF14519_consen 42 NYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQL---GERYHPVGSCT 118 (280)
T ss_dssp --EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHT---TTS---TT--E
T ss_pred ceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHH---hccccCCCeeE
Confidence 448888888765421 125799999999999999999999999998654 44455433 23357889988
Q ss_pred EeeCC----------CCCCCeEEEEeC---C---ccCCCC---CcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCC
Q 025149 151 ITPGF----------KLPASHVIHTVG---P---IYDADS---NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGY 211 (257)
Q Consensus 151 iT~ag----------~L~~k~IIH~V~---P---~~~~~~---~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~ 211 (257)
+.+-. +-.++||+|+.+ | .|.... ...+.+.++++|.+..+. ..+.+|.+|.||||.+|+
T Consensus 119 vIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV 197 (280)
T PF14519_consen 119 VIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGV 197 (280)
T ss_dssp EEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT--
T ss_pred EEECchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCC
Confidence 87652 235789999955 3 233221 124677889999887764 469999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 025149 212 PYEEAAAVALSTVKEFAN 229 (257)
Q Consensus 212 p~~~~A~~~l~ai~~fl~ 229 (257)
|++++|+.|+-|++-|.-
T Consensus 198 ~p~~sAk~M~fAl~l~~l 215 (280)
T PF14519_consen 198 PPEISAKQMAFALRLYNL 215 (280)
T ss_dssp -HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999863
No 20
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=98.76 E-value=3.9e-07 Score=75.94 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=98.9
Q ss_pred EEEEEcccceeccC-CCCcEEEEcCCCCCCCC-CcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCC----
Q 025149 83 LVINKGDITKWSVD-GSSDAIVNPANERMLGG-GGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK---- 156 (257)
Q Consensus 83 I~I~~GDIt~~~v~-~~~DaIVNaaN~~l~~~-gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~---- 156 (257)
|+.++||+|....+ .+..+|++..|.....| ||++.+|.++. |+.+++-++.-+ .+.+..|++.+.+...
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~~---~~dl~LG~~~li~v~~~~~~ 77 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAGK---MKDLHLGDLHLFPIDDKNSR 77 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHHh---cCCCccccEEEEEeccccCC
Confidence 78899999987531 12459999999999888 68999999987 554443333211 1246689999887532
Q ss_pred C-CCCeEEEEeCCccCCCC----CcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHH
Q 025149 157 L-PASHVIHTVGPIYDADS----NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALS 222 (257)
Q Consensus 157 L-~~k~IIH~V~P~~~~~~----~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ 222 (257)
. +..+|...+++...+.. -....|++|+.++-..|.+ +-.||.+|-||+|.+|.|++..-+++-+
T Consensus 78 ~~~~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k 147 (152)
T cd03331 78 LKGPDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRK 147 (152)
T ss_pred CCCCeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 1 23688898988755432 2457888888888877765 4589999999999999999998777543
No 21
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=97.77 E-value=0.00015 Score=65.65 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=104.5
Q ss_pred CceEEEEEcccceecc------CCCCcEEEEcCCCCCCCCCc------HHHHHHHHhCh--HHH--HHHhhcCccCCCcc
Q 025149 80 SAALVINKGDITKWSV------DGSSDAIVNPANERMLGGGG------ADGAIHRAAGP--ELR--EACCKVPEVRPEVR 143 (257)
Q Consensus 80 n~~I~I~~GDIt~~~v------~~~~DaIVNaaN~~l~~~gG------vs~aI~~aaG~--~l~--~e~~~~~~~~~~~~ 143 (257)
..+|.|+.+|-.+.-. ...-=++.|.||....+||= --.+|.+..+. .|. .+....- .+.+.+
T Consensus 55 ~t~i~V~~~dtl~aA~~L~~~~~~~~v~vLNfASa~~PGGG~l~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~-r~~~~p 133 (266)
T TIGR02452 55 RTELKVVNESTLHAAVRLKESYFAGKVALLNFASAKNPGGGFLNGAQAQEESLCRASALYPCLIKFNEYYEFH-RHQRSP 133 (266)
T ss_pred CceEEEEcCCHHHHHHHHHhhccCCCeEEEeccCcCCCCCCcccCccchHHHHHHhccHHHHHhcchhHhhhh-cccCCC
Confidence 4689999999532210 01234899999887755431 12234444331 121 1211110 011123
Q ss_pred cCCCcEEEee--------CCCC-CCC---eEEEEeCCccCC----CC----CcHHHHHHHHHHHHHHHHHcCCcEEEecc
Q 025149 144 CPIGEARITP--------GFKL-PAS---HVIHTVGPIYDA----DS----NPEASLRNAYKNSLSVAKENNIQYIAFTA 203 (257)
Q Consensus 144 ~~~G~v~iT~--------ag~L-~~k---~IIH~V~P~~~~----~~----~~~~~L~~~y~~~L~~A~~~~~~SIAfP~ 203 (257)
+..-.++.++ .|.+ +-. -||-++.|++.. .. .....+++-++.+|..|..+|.+++.+-+
T Consensus 134 l~~~~~IYSP~V~vFR~d~g~~l~~p~~vsvIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA 213 (266)
T TIGR02452 134 LYSDRAIYSPNVPVFRNDDGDLLNEPFLASFITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGA 213 (266)
T ss_pred CCCCceEECCCcEEEECCCCCcccCCceeeEEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 3333333333 1233 222 245556677641 11 12468888899999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHH---HHhcCCCeEEEEecChH----HHHHHH
Q 025149 204 ISCGVYGYPYEEAAAVALSTVK---EFANDFKEVHFVLFSDD----IYNVWL 248 (257)
Q Consensus 204 LgTG~~g~p~~~~A~~~l~ai~---~fl~~l~~V~fv~~~~~----~~~~f~ 248 (257)
+|||.|+-|+.++|+.+.+.+. +|...++.|+|-+++.. .+++|.
T Consensus 214 ~GCG~f~N~p~~VA~~f~evL~~~~ef~g~F~~VvFAI~d~~~~~~~~~~F~ 265 (266)
T TIGR02452 214 WGCGVFGNDPAEVAKIFHDLLSPGGIFKGRIKEVVFAILDRHGQSTNTQIFR 265 (266)
T ss_pred ccccccCCCHHHHHHHHHHHhccCccccCceeEEEEEEeCCCCCCcHHhHhh
Confidence 9999999999999999988887 67778999999999843 566664
No 22
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.014 Score=51.34 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHH---HhcCCCeEEEEecCh--HHHHHHHHHH
Q 025149 177 EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKE---FANDFKEVHFVLFSD--DIYNVWLNKA 251 (257)
Q Consensus 177 ~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~---fl~~l~~V~fv~~~~--~~~~~f~~~~ 251 (257)
.+.|..-.+.+|.+|..++.+-+.+-+.|||+|+-++..+|+++.+.+.+ ++..++.|.|-++|. ....+|.+++
T Consensus 199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g~fkhv~FavlD~n~~~~~iFr~el 278 (285)
T COG4295 199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLGDFKHVVFAVLDRNMTIVNIFRKEL 278 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhcccceEEEEEecCCchHHHHHHHHH
Confidence 36788889999999999999999999999999999999999999887764 445789999999984 3778888877
Q ss_pred HHH
Q 025149 252 KEL 254 (257)
Q Consensus 252 ~~~ 254 (257)
+.+
T Consensus 279 e~f 281 (285)
T COG4295 279 EYF 281 (285)
T ss_pred Hhh
Confidence 654
No 23
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=96.51 E-value=0.033 Score=54.71 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=85.2
Q ss_pred ccCCCcEEEeeCCCCCC-CeEEEEeCCc-cCCCC-CcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCH-----H
Q 025149 143 RCPIGEARITPGFKLPA-SHVIHTVGPI-YDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPY-----E 214 (257)
Q Consensus 143 ~~~~G~v~iT~ag~L~~-k~IIH~V~P~-~~~~~-~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~-----~ 214 (257)
.+.+|++.+|.-.||.. .-|+|.|.-. ...+. ++...+-..++|+|+.|..+++.+|.+|++-+....-.. -
T Consensus 371 ~l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~ 450 (510)
T PF10154_consen 371 TLKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCL 450 (510)
T ss_pred cCCCCceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHH
Confidence 46899999999999974 6678988642 22211 445677889999999999999999999999987543322 2
Q ss_pred HHHHHHHHHHHHHhc--------CCCeEEEEecCh---HHHHHHHHHHHHHhh
Q 025149 215 EAAAVALSTVKEFAN--------DFKEVHFVLFSD---DIYNVWLNKAKELLE 256 (257)
Q Consensus 215 ~~A~~~l~ai~~fl~--------~l~~V~fv~~~~---~~~~~f~~~~~~~~~ 256 (257)
.=|+..+..|+-|+- ..+.|.|++-+. +.|..|...+...|+
T Consensus 451 ~Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~fr 503 (510)
T PF10154_consen 451 KRAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIFR 503 (510)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhhc
Confidence 335667788888873 357899988764 678888888887774
No 24
>PHA00684 hypothetical protein
Probab=79.94 E-value=21 Score=28.83 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=66.6
Q ss_pred EEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCCCCCeEEEEeCCccCCCCCcHHHH
Q 025149 101 AIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASL 180 (257)
Q Consensus 101 aIVNaaN~~l~~~gGvs~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~~k~IIH~V~P~~~~~~~~~~~L 180 (257)
+-|-.+|....+++|-++.-++..|.. +.. + .=..|. ++.+|.+. .++-..-+.+.+
T Consensus 2 IFVFGSNlaG~Hg~GAA~~A~~~~GA~-------~G~---g-~G~~G~-----SYAIPT~~-------~~~l~~~~l~~I 58 (128)
T PHA00684 2 IFVFGSNLAGAHGAGAAAAAHKEHGAA-------WGV---G-EGRTGH-----SYAIPTKA-------GTVISTLSLPDI 58 (128)
T ss_pred eEEecCCccccccchHHHHHHHHhChh-------hcc---c-cCCCCc-----eeeccccc-------CCccccccHHHH
Confidence 457788888889988877666655532 110 0 001222 22333221 111111245789
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHH
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALST 223 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~a 223 (257)
+..+..-+..|.++--.+.-+..||||+.||..++.|..+.++
T Consensus 59 ~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~a 101 (128)
T PHA00684 59 GAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRDA 101 (128)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999876544
No 25
>PHA03033 hypothetical protein; Provisional
Probab=72.47 E-value=14 Score=29.98 Aligned_cols=79 Identities=11% Similarity=-0.016 Sum_probs=51.6
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCCcHH-HHHHHHhChHHHHHHhhcCccCCCcccCCCcEEEeeCCCCCCC
Q 025149 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGAD-GAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPAS 160 (257)
Q Consensus 82 ~I~I~~GDIt~~~v~~~~DaIVNaaN~~l~~~gGvs-~aI~~aaG~~l~~e~~~~~~~~~~~~~~~G~v~iT~ag~L~~k 160 (257)
++.-+.|+|.++-...+...+.......+.+|.|++ -.+.+..|. -++.++. ...+|++.+-.-.+ |
T Consensus 2 ~i~eIng~~~DLFS~p~~~sLaHCIsAD~~MGaGIA~v~FKkkyg~--V~eLk~Q-------kk~~GeVAvLk~d~---R 69 (142)
T PHA03033 2 KIEYINENIWDFLSDDDNINIISFISADFILCKDDCFIYIKKKYNS--IKELKKQ-------KKKKGEVAYIYKNN---K 69 (142)
T ss_pred ceEEecCcchhhhcCCCcceEeeeehhhhhcCCChhhhhHHHHhCC--HHHHHhh-------ccCCCeEEEEecCC---E
Confidence 355677844444322345677777778888999999 778887776 2334443 34567776655443 8
Q ss_pred eEEEEeCCccCC
Q 025149 161 HVIHTVGPIYDA 172 (257)
Q Consensus 161 ~IIH~V~P~~~~ 172 (257)
||+..++-.|-.
T Consensus 70 yIYYLITKdyie 81 (142)
T PHA03033 70 YIIYIIIADYIE 81 (142)
T ss_pred EEEEEEeHHHHH
Confidence 999999866543
No 26
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=52.43 E-value=39 Score=30.43 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=29.8
Q ss_pred CCeEEEEeCCccCCCCCcHH----HHHHHHHHHHHHHHHcCCcEEEec
Q 025149 159 ASHVIHTVGPIYDADSNPEA----SLRNAYKNSLSVAKENNIQYIAFT 202 (257)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~----~L~~~y~~~L~~A~~~~~~SIAfP 202 (257)
|+.|||++.|.-..+....+ .=-...+++|+.|.+.+++.+.+.
T Consensus 67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 68999999875333221222 222678899999999998877653
No 27
>PLN02214 cinnamoyl-CoA reductase
Probab=49.40 E-value=31 Score=31.69 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=28.4
Q ss_pred CCCeEEEEeCCccCCCCCcHHHHH---HHHHHHHHHHHHcCCcEEEec
Q 025149 158 PASHVIHTVGPIYDADSNPEASLR---NAYKNSLSVAKENNIQYIAFT 202 (257)
Q Consensus 158 ~~k~IIH~V~P~~~~~~~~~~~L~---~~y~~~L~~A~~~~~~SIAfP 202 (257)
.++.|||+++|.... ....+. ....++|+.|.+.+++.+.+.
T Consensus 81 ~~d~Vih~A~~~~~~---~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 81 GCDGVFHTASPVTDD---PEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred cCCEEEEecCCCCCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 378999999986432 222222 356788888888888877664
No 28
>PF01831 Peptidase_C16: Peptidase C16 family; InterPro: IPR002705 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains coronavirus cysteine endopeptidases that belong to MEROPS peptidase families C30 (clan PA) and C16 (subfamiles C16A and C16B, clan CA). These peptidase are involved in viral polyprotein processing. All coronaviruses encodes between one and two accessory cysteine proteinases that recognise and process one or two sites in the amino-terminal half of the replicase polyprotein during assembly of the viral replication complex. MHV, HCoV and TGEV encode two accesssory proteinases, called coronavirus papain-like proteinase 1 and 2 (PL1-PRO and PL2-PRO). IBV and SARS encodes only one called PL-PRO []. Coronavirus papain-like proteinases 1 and 2 have restricted specificities, cleaving respectively two and one bond(s)in the polyprotein. This restricted activity may be due to extended specificity sites: Arg or Lys at the cleavage site position P5 are required for PL1-PRO [], and Phe at the cleavage site position P6 is required for PL2-PRO []. PL1-PRO releases p28 and p65 from the N terminus of the polyprotein; PL2-PRO cleaves between p210 and p150. ; GO: 0003968 RNA-directed RNA polymerase activity, 0008234 cysteine-type peptidase activity, 0006508 proteolysis
Probab=47.79 E-value=6.8 Score=34.03 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=29.9
Q ss_pred ecceeeeccCCCCCCCceeecCCCceEEEEEccc
Q 025149 57 AVSVTMSFSSDQRSEDGHFKLSESAALVINKGDI 90 (257)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~f~~~~n~~I~I~~GDI 90 (257)
..++.|+|++++.+-...|...-.+++..++|||
T Consensus 215 ivghgmsfsms~feiaqlyg~citpnvcfvkgdi 248 (249)
T PF01831_consen 215 IVGHGMSFSMSSFEIAQLYGSCITPNVCFVKGDI 248 (249)
T ss_pred EeecceeEecCHHHHHHHhccccCCceEEEeccc
Confidence 4578899999999888888887789999999998
No 29
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=47.54 E-value=40 Score=31.64 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=31.0
Q ss_pred CCeEEEEeCCccCCCCC-cHHHHH---HHHHHHHHHHHHcC-CcEEEecc
Q 025149 159 ASHVIHTVGPIYDADSN-PEASLR---NAYKNSLSVAKENN-IQYIAFTA 203 (257)
Q Consensus 159 ~k~IIH~V~P~~~~~~~-~~~~L~---~~y~~~L~~A~~~~-~~SIAfP~ 203 (257)
|+.|+|++.|.-..... +.+.+. +...|+|+.|.+-+ ++.|.+..
T Consensus 79 cdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TS 128 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTS 128 (327)
T ss_pred CCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEec
Confidence 99999999996554332 123333 56678999888776 77777743
No 30
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.30 E-value=2.1e+02 Score=26.51 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
...+.++++.|.+.|++.|.+=++|+.++.=|++++...|
T Consensus 97 ~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm 136 (296)
T PRK14827 97 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM 136 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHH
Confidence 3467788888889999999999999999999999976544
No 31
>CHL00194 ycf39 Ycf39; Provisional
Probab=38.25 E-value=2e+02 Score=25.83 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=27.5
Q ss_pred CCeEEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHcCCcEEEe
Q 025149 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAF 201 (257)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAf 201 (257)
++.|||++++.+.........=.....++++.|.+.|++.+.+
T Consensus 65 ~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 65 VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 5788998876554322111111245678888888899987766
No 32
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.92 E-value=1.6e+02 Score=26.47 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 182 ~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
..++++++.|.+.|++.|.+=++|+.++.=|+++....|
T Consensus 53 ~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm 91 (250)
T PRK14840 53 KSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELF 91 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 466677888889999999999999999999999987655
No 33
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.31 E-value=74 Score=28.34 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
...++++++.|.+.|++.+.+=++||.++.=|++++...|
T Consensus 36 ~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm 75 (230)
T PRK14837 36 LKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLM 75 (230)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 3567778888889999999999999999999999988654
No 34
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=33.79 E-value=57 Score=25.19 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=32.2
Q ss_pred CeEEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHcCCcEEEecc
Q 025149 160 SHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTA 203 (257)
Q Consensus 160 k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~ 203 (257)
-.|.|+..|.|-.+.- .=...+..+|+.|.+.|++-|.+|.
T Consensus 40 i~i~HT~V~d~lrGqG---ia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQG---IAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCc---HHHHHHHHHHHHHHHcCCeEcccch
Confidence 4789999998766542 3345678899999999999998876
No 35
>KOG4506 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=53 Score=31.63 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=43.8
Q ss_pred cCCCcEEEeeCCCCCCC-eEEEEeCC-ccCCCC-CcHHHHHHHHHHHHHHHHHcCCcEEEecccccCC
Q 025149 144 CPIGEARITPGFKLPAS-HVIHTVGP-IYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGV 208 (257)
Q Consensus 144 ~~~G~v~iT~ag~L~~k-~IIH~V~P-~~~~~~-~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~ 208 (257)
+-+|++.++....+.-- .++|.+.- ....+. +...---..++|+++.|..+++.+|.+|+|-..-
T Consensus 417 llP~eal~qd~sc~seihiafHL~VDd~lkS~eInaR~P~iaGlRNIiktaar~d~sTIhIPLLLid~ 484 (598)
T KOG4506|consen 417 LLPGEALIQDHSCLSEIHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLLIDD 484 (598)
T ss_pred cCchhhhhcCccccchhheeeEeeehhhhhcCCccCcCcHHHHHHHHHHHHHhcCCceeeeeeEEecC
Confidence 45688888877766543 45776653 222222 3333344578999999999999999999987543
No 36
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=31.90 E-value=91 Score=27.51 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 182 ~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
..+++++..|.+.|++.+.+=++|+.++.=|+++....|
T Consensus 31 ~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm 69 (221)
T cd00475 31 EKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLM 69 (221)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHH
Confidence 466777888889999999999999999999999987554
No 37
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=31.12 E-value=2.6e+02 Score=26.35 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=29.2
Q ss_pred CCCeEEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHcCCcEEEec
Q 025149 158 PASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFT 202 (257)
Q Consensus 158 ~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP 202 (257)
+++.|||++++.+.........-.....++++.|.+.|++.+.+-
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 478999998875432221111223456788888888898877663
No 38
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=30.67 E-value=2.9e+02 Score=25.25 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
-..+...|+.|.+.|++.|.+=++|+.+|+=|++++-..|
T Consensus 66 f~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM 105 (271)
T KOG1602|consen 66 FEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLM 105 (271)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHH
Confidence 3467788999999999999999999999999999987665
No 39
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=30.51 E-value=94 Score=27.57 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 182 ~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
..++++++.|.+.|++.+.+=++||.++.=|++++...|
T Consensus 30 ~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm 68 (226)
T TIGR00055 30 KSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLM 68 (226)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHH
Confidence 467778888889999999999999999999999987654
No 40
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=30.42 E-value=81 Score=28.91 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=29.2
Q ss_pred CCeEEEEeCCccCCCC--CcHHHH---HHHHHHHHHHHHHcCCcEEEecc
Q 025149 159 ASHVIHTVGPIYDADS--NPEASL---RNAYKNSLSVAKENNIQYIAFTA 203 (257)
Q Consensus 159 ~k~IIH~V~P~~~~~~--~~~~~L---~~~y~~~L~~A~~~~~~SIAfP~ 203 (257)
+++|||.++....... ...... -.+..++|+.|.+.+++.+.++.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 6899999985322111 112222 24667899999999998888764
No 41
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.88 E-value=4e+02 Score=23.87 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 182 ~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
..+.++++.|.+.|++.|.+=++|+.++.=|+++....|
T Consensus 40 ~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm 78 (239)
T PRK14839 40 EAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLM 78 (239)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHH
Confidence 466777888889999999999999999999999987554
No 42
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.15 E-value=3.8e+02 Score=24.18 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
.+.+.++++.|.+.|++.|.+=++|+.++.=|.++....|
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm 96 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLL 96 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHH
Confidence 3566778888889999999999999999999998887655
No 43
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=28.69 E-value=88 Score=25.27 Aligned_cols=36 Identities=31% Similarity=0.464 Sum_probs=28.5
Q ss_pred CCCeEEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHcCCcEEEe
Q 025149 158 PASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAF 201 (257)
Q Consensus 158 ~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAf 201 (257)
+|+.|||+++|.+.+ ...++++++.+.+.+.+.+.+
T Consensus 60 ~~d~vi~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 60 GADAVIHAAGPPPKD--------VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TSSEEEECCHSTTTH--------HHHHHHHHHHHHHTTSSEEEE
T ss_pred hcchhhhhhhhhccc--------cccccccccccccccccccee
Confidence 378999999886541 667888888888889988776
No 44
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.84 E-value=1.1e+02 Score=27.22 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 182 ~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
..++++++.|.+.|++.+.+=++|+.++.=|+++....|
T Consensus 35 ~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm 73 (233)
T PRK14833 35 KTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM 73 (233)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHH
Confidence 456677778888999999999999999999999887654
No 45
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.22 E-value=1.2e+02 Score=27.18 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHHh
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFA 228 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl 228 (257)
...+.++++.|.+.|++.|.+=++|+.++.=|+++....| +-+.+++
T Consensus 38 ~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm-~L~~~~l 84 (241)
T PRK14842 38 ANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIF-GLLVEFI 84 (241)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH-HHHHHHH
Confidence 3566778888889999999999999999999999887554 3334443
No 46
>PLN02778 3,5-epimerase/4-reductase
Probab=26.47 E-value=1.1e+02 Score=27.42 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=27.5
Q ss_pred CCCeEEEEeCCccCCC-----CCcHHHHH---HHHHHHHHHHHHcCCcEEEe
Q 025149 158 PASHVIHTVGPIYDAD-----SNPEASLR---NAYKNSLSVAKENNIQYIAF 201 (257)
Q Consensus 158 ~~k~IIH~V~P~~~~~-----~~~~~~L~---~~y~~~L~~A~~~~~~SIAf 201 (257)
.+++|||++++..... .+....++ ....++++.|.+.+++-+.+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4799999998753211 11222222 34568888898888876554
No 47
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.07 E-value=1.3e+02 Score=26.82 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
...++++++.|.+.|++.|.+=++|+.++.=|+++....|
T Consensus 33 ~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm 72 (233)
T PRK14841 33 AEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLM 72 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHH
Confidence 3566778888889999999999999999999999987654
No 48
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=25.50 E-value=2e+02 Score=25.42 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=27.1
Q ss_pred CCeEEEEeCCccCCCCCcH-HHHH---HHHHHHHHHHHHc-CCcEEEec
Q 025149 159 ASHVIHTVGPIYDADSNPE-ASLR---NAYKNSLSVAKEN-NIQYIAFT 202 (257)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~-~~L~---~~y~~~L~~A~~~-~~~SIAfP 202 (257)
+++|||+++|......... ..+. ....++|+.|.+. +++.+.+.
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~ 125 (322)
T PLN02662 77 CEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVT 125 (322)
T ss_pred CCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 6899999998543211221 2222 4556778877766 78777764
No 49
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.15 E-value=1.3e+02 Score=26.97 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHH
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAV 219 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~ 219 (257)
...+.+++..|.+.|++.|.+=++|++++.=|.++....
T Consensus 50 ~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~L 88 (249)
T PRK14831 50 VDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFL 88 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHH
Confidence 356677888888999999999999999999999888644
No 50
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.94 E-value=1.5e+02 Score=26.60 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 182 ~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
..+.+++..|.+.|++.|.+=++|++++.=|.+++...|
T Consensus 45 ~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm 83 (243)
T PRK14829 45 PVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLM 83 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHH
Confidence 566677788889999999999999999999999877543
No 51
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.86 E-value=4.2e+02 Score=25.68 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEe-cccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 025149 179 SLRNAYKNSLSVAKENNIQYIAF-TAISCGVYGYPYEEAAAVALSTVKEFANDFKEVHFVLF 239 (257)
Q Consensus 179 ~L~~~y~~~L~~A~~~~~~SIAf-P~LgTG~~g~p~~~~A~~~l~ai~~fl~~l~~V~fv~~ 239 (257)
.=...+...|+.|.+.|++.|.| |.-. ....+.+++.+.+.+++.+-+..-..|.+++-
T Consensus 215 kSv~~~~~eL~rA~~LGa~~VV~HPGs~--~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLE 274 (413)
T PTZ00372 215 KSYDAFLDDLQRCEQLGIKLYNFHPGST--VGQCSKEEGIKNIADCINKAHEETKSVIIVLE 274 (413)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCcC--CCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEe
Confidence 33567889999999999999999 5333 23445577777777777665543233555543
No 52
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.85 E-value=1.5e+02 Score=26.52 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHHh
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFA 228 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl 228 (257)
...++++++.|.+.|++.|.+=++|+.++.=|+++....| +-+.+++
T Consensus 40 ~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm-~l~~~~l 86 (242)
T PRK14838 40 AETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALM-SLLLDSI 86 (242)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHH-HHHHHHH
Confidence 3566778888889999999999999999999999887554 3334333
No 53
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.83 E-value=1.5e+02 Score=26.80 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
...++++++.|.+.|++.+.+=++|+.++.=|+++....|
T Consensus 48 ~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm 87 (253)
T PRK14832 48 ARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLM 87 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 3566778888889999999999999999999999987655
No 54
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=23.40 E-value=1.6e+02 Score=25.82 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 182 ~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
..++++++.|.+.|++.|.+=++|+.++.=|+++....|
T Consensus 25 ~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm 63 (223)
T PF01255_consen 25 EKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALM 63 (223)
T ss_dssp HHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHH
Confidence 345677777888999999999999999999999987654
No 55
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.15 E-value=1.6e+02 Score=26.16 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHHHHHHHHH
Q 025149 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEF 227 (257)
Q Consensus 182 ~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~f 227 (257)
..++++++.|.+.|++.|.+=++|+-++.=|+++....| +-+.++
T Consensus 24 ~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm-~l~~~~ 68 (229)
T PRK10240 24 KSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALM-ELFVWA 68 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHH-HHHHHH
Confidence 456677778888999999999999999999988887543 334433
No 56
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=22.71 E-value=57 Score=31.81 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=20.2
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcC
Q 025149 80 SAALVINKGDITKWSVDGSSDAIVNPA 106 (257)
Q Consensus 80 n~~I~I~~GDIt~~~v~~~~DaIVNaa 106 (257)
+.+|.|++||+.+++..+++|+||.=-
T Consensus 240 ~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 240 GDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp TTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred CCeEEEEeCcccCCCCCCceeEEEEec
Confidence 368999999999998767899999754
No 57
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=22.59 E-value=1.6e+02 Score=25.87 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=27.6
Q ss_pred CCCeEEEEeCCcc----CCCCCcHHH---HHHHHHHHHHHHHHcCCcEEEe
Q 025149 158 PASHVIHTVGPIY----DADSNPEAS---LRNAYKNSLSVAKENNIQYIAF 201 (257)
Q Consensus 158 ~~k~IIH~V~P~~----~~~~~~~~~---L~~~y~~~L~~A~~~~~~SIAf 201 (257)
.++.|||++++.- ... ..... -.....++|+.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~-~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMT-YPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhh-CcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 3589999998631 111 12222 2235678899998888887777
No 58
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=21.90 E-value=5.3e+02 Score=23.64 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=43.1
Q ss_pred CCeEEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHcCCcEEEecc-cccCCCCCCHHHHHHHHHHHHHHHhc
Q 025149 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTA-ISCGVYGYPYEEAAAVALSTVKEFAN 229 (257)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~-LgTG~~g~p~~~~A~~~l~ai~~fl~ 229 (257)
+.|+|+...|.- ...+.=.+++...++.|+..|++.|.|=+ -. .+-.++++.+-+.+++.+-++
T Consensus 68 ApYlINl~s~~~----e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG~~---~~~~~e~~l~~i~~~Ln~~~~ 132 (280)
T COG0648 68 APYLINLASPEK----EKVEKSIERLIDEIDRCEQLGAKLLVFHPGSY---LGQGKEEGLNRIAEALNELLE 132 (280)
T ss_pred cceeecCCCCCH----HHHHHHHHHHHHHHHHHHHcCCcEEEECCccc---cCCCHHHHHHHHHHHHHHHhh
Confidence 568888877641 11334456777788889999999999933 22 223378888888777766554
No 59
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.67 E-value=1.9e+02 Score=26.06 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 182 ~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
..+.+++..|.+.|++.|.+=++|+-++.=|+++....|
T Consensus 45 ~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm 83 (249)
T PRK14834 45 EALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLF 83 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHH
Confidence 456677778888999999999999999999998887553
No 60
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=21.49 E-value=2.5e+02 Score=25.08 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=26.5
Q ss_pred CCeEEEEeCCccCCCCCcH-HHHH---HHHHHHHHHHHHc-CCcEEEec
Q 025149 159 ASHVIHTVGPIYDADSNPE-ASLR---NAYKNSLSVAKEN-NIQYIAFT 202 (257)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~-~~L~---~~y~~~L~~A~~~-~~~SIAfP 202 (257)
++.|||+++|......+.. ..+. ....++|+.|.+. +++.|.+.
T Consensus 78 ~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~ 126 (322)
T PLN02986 78 CDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILT 126 (322)
T ss_pred CCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 6899999998533211121 2232 3456778877774 67777664
No 61
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.10 E-value=1.9e+02 Score=26.37 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 182 ~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
+.+.++++.|.+.|++.|.+=++|+.++.=|+++....|
T Consensus 72 ~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm 110 (275)
T PRK14835 72 QKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLM 110 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHH
Confidence 466677888889999999999999999999999887664
No 62
>PF15162 DUF4580: Domain of unknown function (DUF4580)
Probab=20.72 E-value=2.2e+02 Score=24.00 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=36.8
Q ss_pred CcEEEecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE----ecChHHHHHHHHHHHHHh
Q 025149 196 IQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVHFV----LFSDDIYNVWLNKAKELL 255 (257)
Q Consensus 196 ~~SIAfP~LgTG~~g~p~~~~A~~~l~ai~~fl~~l~~V~fv----~~~~~~~~~f~~~~~~~~ 255 (257)
-.||.||.=|..-.-.+..++-. +++.+.+|.+-.++=.++ +++++.|+..... +++|
T Consensus 39 ~~svIFpLSGvAFLL~d~~~~~~-~l~ki~kF~~ihrNsflvL~aalhg~~ew~~m~~i-qRFL 100 (162)
T PF15162_consen 39 PGSVIFPLSGVAFLLMDAQECFM-FLAKIEKFIDIHRNSFLVLSAALHGPEEWKLMFRI-QRFL 100 (162)
T ss_pred CCeEEEEcccceeeEeccHHHhh-HHHHHHHHHhccCCceEEeehhhcCHHHHHHHHHH-HHHh
Confidence 45777777777777677777666 777777777655443332 3445566666666 5555
No 63
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.61 E-value=3.5e+02 Score=26.47 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=56.4
Q ss_pred EEeeCCCCCCCeEEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHcCCcEEEecccccCCCCCCHH---HHHHHHHHHHHH
Q 025149 150 RITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYE---EAAAVALSTVKE 226 (257)
Q Consensus 150 ~iT~ag~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~---~~A~~~l~ai~~ 226 (257)
.+..|++-.|.| |+.|.-++...+ -.+...+..+-++ .+.|++-|.+-..-++.||.+.. ...--+++.+.+
T Consensus 149 ~I~eGCn~~Ctf---CiiP~~RG~~rS-r~~e~Il~ev~~L-v~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~ 223 (437)
T COG0621 149 KIQEGCNKFCTF---CIIPYARGKERS-RPPEDILKEVKRL-VAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK 223 (437)
T ss_pred EhhcCcCCCCCe---eeeeccCCCccC-CCHHHHHHHHHHH-HHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc
Confidence 345666666665 455766654422 1333344444333 35799999999999999999974 333344555555
Q ss_pred HhcCCCeEEEEec-----ChHHHHHHHH
Q 025149 227 FANDFKEVHFVLF-----SDDIYNVWLN 249 (257)
Q Consensus 227 fl~~l~~V~fv~~-----~~~~~~~f~~ 249 (257)
...+.+|+|-.. +++..++|.+
T Consensus 224 -I~G~~riR~~~~~P~~~~d~lI~~~~~ 250 (437)
T COG0621 224 -IPGIERIRFGSSHPLEFTDDLIEAIAE 250 (437)
T ss_pred -CCCceEEEEecCCchhcCHHHHHHHhc
Confidence 445677887543 3445555543
No 64
>PTZ00325 malate dehydrogenase; Provisional
Probab=20.12 E-value=2.6e+02 Score=25.94 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=33.3
Q ss_pred CCCeEEEEeCCccCCCCCcHHHHHH---HHHHHHHHHHHcCCcEEEe
Q 025149 158 PASHVIHTVGPIYDADSNPEASLRN---AYKNSLSVAKENNIQYIAF 201 (257)
Q Consensus 158 ~~k~IIH~V~P~~~~~~~~~~~L~~---~y~~~L~~A~~~~~~SIAf 201 (257)
.|+.|+|++|+.-..+....+.|.. .++++++...+.+.+.+.+
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 5899999999764433333456666 8889999888899888776
No 65
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=20.01 E-value=1.8e+02 Score=27.27 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccCCCCCCHHHHHHHH
Q 025149 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (257)
Q Consensus 181 ~~~y~~~L~~A~~~~~~SIAfP~LgTG~~g~p~~~~A~~~ 220 (257)
...++++++.|.+.|++.+.+=++|+-++.=|++++.-.|
T Consensus 49 ~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm 88 (322)
T PTZ00349 49 SKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLF 88 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHH
Confidence 3567788888899999999999999999999999997655
Done!