BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025151
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 25/232 (10%)
Query: 26 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAW 85
+V K A V++LHGLGD G W++ + +IK+ICP AP RP+T+ +W
Sbjct: 15 IVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSW 74
Query: 86 FDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-----PTDIKLGVGGFSMGAATALYSATC 140
FD+ LS D +D G+ AA ++ L+ E P++ ++ +GGFS G A +LY+A
Sbjct: 75 FDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTALT 133
Query: 141 FAHGKYGNGNPYPAKLSAVVGLSGWLPCSKTL-KNKLGGENEARRRAASLPILLCHGKGD 199
KL+ V LS WLP + + +GG N + IL CHG D
Sbjct: 134 TQQ-----------KLAGVTALSCWLPLRASFPQGPIGGANR------DISILQCHGDCD 176
Query: 200 DVVQYKFGEKSSQALTSNAF-QDVIFKAYSGLGHYTCPEEMDEVCAWLTTKL 250
+V FG + + L + +V FK Y G+ H +C +EM +V ++ L
Sbjct: 177 PLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMDVKQFIDKLL 228
>pdb|1AUO|A Chain A, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUO|B Chain B, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUR|A Chain A, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
pdb|1AUR|B Chain B, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
Length = 218
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 25/232 (10%)
Query: 26 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAPTRPMTIFGGFPST 83
+++P A V+WLHGLG + + + E L L +++ P APTRP+TI GG+
Sbjct: 6 ILQPAKPADACVIWLHGLGADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMP 65
Query: 84 AWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEP-TDI---KLGVGGFSMGAATALYSAT 139
+W+D+ +S LE L+ +A V +L+ + T I ++ + GFS G A ++A
Sbjct: 66 SWYDIKAMSPARSISLEELEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAF 125
Query: 140 CFAHGKYGNGNPYPAKLSAVVGLSGWLPCSKTLKNKLGGENEARRRAASLPILLCHGKGD 199
G G V+ LS + P G E E +P L HG+ D
Sbjct: 126 INWQGPLGG----------VIALSTYAPT-------FGDELELSASQQRIPALCLHGQYD 168
Query: 200 DVVQYKFGEKSSQALTSNAFQDVIFKAYSGLGHYTCPEEMDEVCAWLTTKLG 251
DVVQ G + + L S V ++ Y +GH P+E+ ++ AWL +LG
Sbjct: 169 DVVQNAMGRSAFEHLKSRGV-TVTWQEYP-MGHEVLPQEIHDIGAWLAARLG 218
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 37/257 (14%)
Query: 5 GPSMSSGGNTVRRAIEFGRTYVVRPKGKHQATVVWLHGLGDNGSS---WSQ--LLETLPL 59
GP ++ G+ ++R I V P G+H A++++LHG GD+G W + L + L
Sbjct: 1 GPMAAASGSVLQRCI-------VSPAGRHSASLIFLHGSGDSGQGLRMWIKQVLNQDLTF 53
Query: 60 PNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-PT 118
+IK I PTAP R T G S WFD ++ D P+ LE +D + +L+ E +
Sbjct: 54 QHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESIDVMCQVLTDLIDEEVKS 113
Query: 119 DIK---LGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLPCSKTLKNK 175
IK + +GGFSMG A++ A Y N ++ V LS +L NK
Sbjct: 114 GIKKNRILIGGFSMGGCMAMHLA-------YRNHQ----DVAGVFALSSFL-------NK 155
Query: 176 LGGENEARRRA-ASLPILL-CHGKGDDVVQYKFGEKSSQALTSNAFQDVIFKAYSGLGHY 233
+A +++ LP L CHG D++V + + E+++ L S F ++ + H
Sbjct: 156 ASAVYQALQKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGV-TTKFHSFPNVYHE 214
Query: 234 TCPEEMDEVCAWLTTKL 250
E+D + W+ TKL
Sbjct: 215 LSKTELDILKLWILTKL 231
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 27/230 (11%)
Query: 26 VVRPKGKHQATVVWLHGLGDNGSSWSQLLE--TLPLPNIKWICPTAPTRPMTIFGGFPST 83
++ P + + V+WLHGLG +G + ++ + L I++I P A P+TI G
Sbjct: 29 LMEPAKQARFCVIWLHGLGADGHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMR 88
Query: 84 AWFDVGDLSEDVPD---DLEGLDAAAAHVVNLLSTEPTD----IKLGVGGFSMGAATALY 136
AW+D+ L + + D+EG++++ A V L+ ++ + + GFS G A Y
Sbjct: 89 AWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATY 148
Query: 137 SATCFAHGKYGNGNPYPAKLSAVVGLSGWLPCSKTLKNKLGGENEARRRAASLPILLCHG 196
+A KL ++ LS +LP K K+ N+ LPIL+CHG
Sbjct: 149 TAIT-----------SQRKLGGIMALSTYLPAWDNFKGKITSINKG------LPILVCHG 191
Query: 197 KGDDVVQYKFGEKSSQALTSNAFQDVIFKAYSGLGHYTCPEEMDEVCAWL 246
D V+ G S L + F + +K Y G+ H C EE+ ++ ++
Sbjct: 192 TDDQVLPEVLGHDLSDKLKVSGFANE-YKHYVGMQHSVCMEEIKDISNFI 240
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 26/222 (11%)
Query: 35 ATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLS 92
A ++WLHGLG + + + + E L LP+ ++I P AP++ +T+ GG+ +W+D+ S
Sbjct: 25 ACIIWLHGLGADRTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFS 84
Query: 93 EDVPDDLEGLDAAAAHVVNLLSTEPTD----IKLGVGGFSMGAATALYSATCFAHGKYGN 148
D + L+A+A V+ L+ + ++ + GFS G A L++A
Sbjct: 85 PARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAF--------- 135
Query: 149 GNPYPAKLSAVVGLSGWLPCSKTLKNKLGGENEARRRAASLPILLCHGKGDDVVQYKFGE 208
Y L V+ LS + P L +E +R +P+L HG DDVV G
Sbjct: 136 -RRYAQPLGGVLALSTYAPTFDDL-----ALDERHKR---IPVLHLHGSQDDVVDPALGR 186
Query: 209 KSSQALTSNAFQDVIFKAYSGLGHYTCPEEMDEVCAWLTTKL 250
+ AL + + V + Y +GH EE+ ++ AWL +L
Sbjct: 187 AAHDALQAQGVE-VGWHDYP-MGHEVSLEEIHDIGAWLRKRL 226
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 95/250 (38%), Gaps = 42/250 (16%)
Query: 13 NTVRRAIEFGRTYVVRPKGKHQATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAP 70
+ + R + FGR G+ + VV+LHG G +G+ L E L LP ++ P AP
Sbjct: 47 DIMTRKLTFGRRGAA--PGEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAP 104
Query: 71 TRPMTIFGGFPSTAWFDV------GDLSEDVPDDLEGLDAAAAHVVNLLSTEPTDIKLGV 124
GF WF + + + D A H L L +
Sbjct: 105 EPCRACGFGF---QWFPIPWLDGSSETAAAEGMAAAARDLDAFHDERLAEEGLPPEALAL 161
Query: 125 GGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLPCSKTLKNKLGGENEARR 184
GFS G AL+ A A +++ +VG SG L + L EAR
Sbjct: 162 VGFSQGTMMALHVAPRRAE-----------EIAGIVGFSGRLLAPERLAE------EARS 204
Query: 185 RAASLPILLCHGKGDDVVQYKFGEKSSQALTSNAFQDVIFKAY----SGLGHYTCPEEMD 240
+ P+LL HG D VV + + +L A + F Y G GH P+ +
Sbjct: 205 KP---PVLLVHGDADPVVPF-----ADMSLAGEALAEAGFTTYGHVMKGTGHGIAPDGLS 256
Query: 241 EVCAWLTTKL 250
A+L +L
Sbjct: 257 VALAFLKERL 266
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 98/250 (39%), Gaps = 42/250 (16%)
Query: 13 NTVRRAIEFGRTYVVRPKGKHQATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAP 70
+ + R + FGR G+ + VV+LHG G +G+ L E L LP ++ P AP
Sbjct: 47 DIMTRKLTFGRRGAA--PGEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAP 104
Query: 71 TRPMTI----FGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE--PTDIKLGV 124
P F FP W D + A + L+ E P + L +
Sbjct: 105 -EPCRANGFGFQWFP-IPWLDGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPE-ALAL 161
Query: 125 GGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLPCSKTLKNKLGGENEARR 184
GFS G AL+ A A +++ +VG SG L + L EAR
Sbjct: 162 VGFSQGTMMALHVAPRRAE-----------EIAGIVGFSGRLLAPERLAE------EARS 204
Query: 185 RAASLPILLCHGKGDDVVQYKFGEKSSQALTSNAFQDVIFKAY----SGLGHYTCPEEMD 240
+ P+LL HG D VV + + +L A + F Y G GH P+ +
Sbjct: 205 KP---PVLLVHGDADPVVPF-----ADMSLAGEALAEAGFTTYGHVMKGTGHGIAPDGLS 256
Query: 241 EVCAWLTTKL 250
A+L +L
Sbjct: 257 VALAFLKERL 266
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 188 SLPILLCHGKGDDVVQYKFGEKSSQALTSNAFQDVIFKAYSGLGH---YTCPEEMD 240
+P+L+ HG D VV Y S L +NA K+Y GL H T PE ++
Sbjct: 215 DVPVLVAHGTDDQVVPYADAAPKSAELLANA----TLKSYEGLPHGMLSTHPEVLN 266
>pdb|2AJT|A Chain A, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|B Chain B, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|C Chain C, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2HXG|A Chain A, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|B Chain B, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|C Chain C, Crystal Structure Of Mn2+ Bound Ecai
Length = 500
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 74 MTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE 116
MTIF + WF +G P+ L + A HVVN L+TE
Sbjct: 1 MTIFDNYE--VWFVIGSQHLYGPETLRQVTQHAEHVVNALNTE 41
>pdb|3VI3|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 454
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 80 FPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTDIKLGVGGFSMGAATALYSAT 139
+P ++ + DLS + DDLE + + ++N + +D ++G G F S T
Sbjct: 121 YPIDLYY-LMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTT 179
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 77 FGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTDIKLGVGGFSMGAATALY 136
FGGF WFD + + V +D AAA VNLL +PT I+L + T Y
Sbjct: 322 FGGFGGYVWFDKNN--DGVQNDSNA--AAAGITVNLL--DPTGIRLAT---TTTDITGHY 372
Query: 137 SATCFAHGKY 146
+ +G Y
Sbjct: 373 NFDNLTNGNY 382
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 77 FGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTDIKLGVGGFSMGAATALY 136
FGGF WFD + + V +D AAA VNLL +PT I+L + T Y
Sbjct: 305 FGGFGGYVWFDKNN--DGVQNDSNA--AAAGITVNLL--DPTGIRLAT---TTTDITGHY 355
Query: 137 SATCFAHGKY 146
+ +G Y
Sbjct: 356 NFDNLTNGNY 365
>pdb|4F2D|A Chain A, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|B Chain B, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|C Chain C, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
Length = 500
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 75 TIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE 116
TIF + WF +G P+ L + A HVVN L+TE
Sbjct: 2 TIFDNYE--VWFVIGSQHLYGPETLRQVTQHAEHVVNALNTE 41
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In
Complex With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In
Complex With Pmsf
Length = 266
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 27 VRPKGKHQATVVWLHGLGDNGSSWSQLLETL 57
VR G + VV HG G + S+WS++L L
Sbjct: 10 VRVVGSGERVVVLSHGFGTDQSAWSRVLPYL 40
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With
A Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With
A Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 27 VRPKGKHQATVVWLHGLGDNGSSWSQLLETL 57
VR G + VV HG G + S+WS++L L
Sbjct: 12 VRVVGSGERVVVLSHGFGTDQSAWSRVLPYL 42
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 78 GGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLS 114
GGFP G L D PD L D AH+ ++++
Sbjct: 126 GGFPGWLQRVKGKLRTDAPDYLHATDNYVAHIASIIA 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,674,587
Number of Sequences: 62578
Number of extensions: 377761
Number of successful extensions: 1053
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1026
Number of HSP's gapped (non-prelim): 20
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)