RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 025152
(257 letters)
>gnl|CDD|178380 PLN02783, PLN02783, diacylglycerol O-acyltransferase.
Length = 315
Score = 479 bits (1234), Expect = e-173
Identities = 189/257 (73%), Positives = 220/257 (85%)
Query: 1 MFIPIDEHSKLGRSLSRYICKHACSYFPITLHVEDINAFHPDRAYVFGYEPHSVLPIGVV 60
MFIP SKLGR ++R+ICK+AC+YFP+ LHVED AF P+RAYVFGYEPHSVLPIGV+
Sbjct: 59 MFIPAHPTSKLGRKIARFICKYACAYFPVRLHVEDEEAFDPNRAYVFGYEPHSVLPIGVI 118
Query: 61 ALADLTGFMPLPKIKVLGSSAVFYTPFLRHIWTWLGTTPATKKNFISLLAAGYSCILVPG 120
ALADL+GF+PLPKI+ L SSAVFYTPFLRHIWTWLG PA++KNF SLL AGYSCI+VPG
Sbjct: 119 ALADLSGFLPLPKIRALASSAVFYTPFLRHIWTWLGLDPASRKNFTSLLKAGYSCIIVPG 178
Query: 121 GVQETFHMEHGSEVAFLKTRRGFVRIAMEMGRPLVPVFCYGQSNVYKWWKPGGKLYLQFS 180
GVQE +MEHGSEVA+LK+R+GFV+IAME G PLVPVFC+GQ+ YKWWKPGG L + S
Sbjct: 179 GVQECLYMEHGSEVAYLKSRKGFVKIAMETGAPLVPVFCFGQTRAYKWWKPGGPLVPKLS 238
Query: 181 RAIKFTPIYFWGLFGSPLPSRHPMHVVVGKPIELKKSPQPTNEEVTEVHNQFVEALRDLF 240
RAI FTPI FWG +GSP+P R PMHVVVGKPIE+KK+PQP+ EEV EV QFVEAL+DLF
Sbjct: 239 RAIGFTPIVFWGRYGSPIPHRTPMHVVVGKPIEVKKNPQPSQEEVAEVLEQFVEALQDLF 298
Query: 241 ERHKAQVGYPDLELKIL 257
E+HKA+ GY DLEL +L
Sbjct: 299 EKHKARAGYGDLELVVL 315
>gnl|CDD|112781 pfam03982, DAGAT, Diacylglycerol acyltransferase. The terminal
step of triacylglycerol (TAG) formation is catalyzed by
the enzyme diacylglycerol acyltransferase (DAGAT).
Length = 297
Score = 268 bits (688), Expect = 2e-90
Identities = 101/280 (36%), Positives = 142/280 (50%), Gaps = 30/280 (10%)
Query: 2 FIPIDEHSKLGRSLSR--YICKHACSYFPITLHVEDINAFHPDRAYVFGYEPHSVLPIGV 59
+ + +R I K +YFP+ LH + P+R Y+FGY PH +L +G
Sbjct: 22 DWNSPKRGGYRSNWARNWRIWKWFANYFPVKLH-KTAE-LPPNRNYLFGYHPHGILSVGA 79
Query: 60 -VALA-DLTGFMPL-----PKIKVLGSSAVFYTPFLRHIWTWLGTTPATKKNFISLLAAG 112
+ + TGFM P I L + FYTPF R I LG ++++ +L
Sbjct: 80 FSNFSTNATGFMDKFPGIRPNICTL--AGQFYTPFRREILLSLGLIEVSRESIEYVLDKC 137
Query: 113 YS---CILVPGGVQETFHMEHGSEVAFLKTRRGFVRIAMEMGRPLVPVFCYGQSNVYKWW 169
+LV GG E G LK R+GFVRIA++ G LVPV+ +G+++VYK W
Sbjct: 138 GKGRAVVLVVGGAAEALEAHPGKHTLTLKNRKGFVRIALKTGADLVPVYSFGENDVYKQW 197
Query: 170 KPGGKLYLQ-----FSRAIKFTPIYFWG--LFGSP----LPSRHPMHVVVGKPIELKKSP 218
+ L+ RAI F+P F G +F S LP R P+ VVG PIE+ K+
Sbjct: 198 ENPEGSRLRWVQEKLKRAIGFSPPIFHGRGVFNSYTFGLLPFRKPITTVVGAPIEVTKTL 257
Query: 219 QPTNEEVTEVHNQFVEALRDLFERHKAQVGYP---DLELK 255
PT E++ E+H Q++EALR+LFE HK + G P DL L
Sbjct: 258 NPTQEQIDELHGQYMEALRELFEEHKTKFGVPPDTDLVLN 297
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 134 bits (340), Expect = 5e-39
Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 26 YFPITLHVEDINAFHPDRAYVFGYEPHSVLPI--GVVALADLTGFMPLPKIKVLGSSAVF 83
YF + N PD PH LPI ++A A L F + L +F
Sbjct: 4 YFRVYEVRGLENI--PDEGPALLVHPHGGLPIDGALLAAAFLLLFPGRL-PRALADHFLF 60
Query: 84 YTPFLRHIWTWLGTTPATKKNFISLLAAGYSCILVPGGVQETFHMEHGSEVAFLKTRRGF 143
P LR + LG P +++N + LL G ++ PGG +E + K R+GF
Sbjct: 61 PLPGLRDLLRRLGAVPGSRENCVRLLREGELVLIFPGGAREALKSKREEYYLLWKKRKGF 120
Query: 144 VRIAMEMGRPLVPVFCYGQSNVYKWWKPGGKLYLQFSRAIKFTPIYFWGLFGSPLPSRHP 203
R+A+ G P+VPVF +G+ +++ P+ PLP R P
Sbjct: 121 ARLALRAGAPIVPVFTFGEEELFRVLGDP------------DGPVGKRLFRLLPLPRRLP 168
Query: 204 MHVVVGKPIELKK--SPQPTNEEVTEVHNQFVEALRDLFERHKA 245
++ V G+PI + + P P +E+V E+H +++ ALR+L E+HK
Sbjct: 169 LYPVFGEPIVVPRPPIPDPPDEDVEELHQKYIAALRELIEKHKK 212
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 45.0 bits (107), Expect = 7e-06
Identities = 36/176 (20%), Positives = 55/176 (31%), Gaps = 46/176 (26%)
Query: 67 GFMPLPKIKVLGSSAVFYTPFLRHIWTWLGTTPATKKN----------FISLLAAGYSCI 116
G I+ + +F PFL + LG P + N I L G S +
Sbjct: 42 GAALPRPIRFVAKKELFKIPFLGWLLRLLGAIPIDRGNGRSAREALREAIEALKEGESVV 101
Query: 117 LVP-GGVQETFHMEHGSEVAFLKTRRGFVRIAMEMGRPLVPVFCYGQSNVYKWWKPGGKL 175
+ P G + L + G R+A E G P+VPV G K
Sbjct: 102 IFPEGTRSRDGEL--------LPFKSGAFRLAKEAGVPIVPVAISGTWGSLPKGK----- 148
Query: 176 YLQFSRAIKFTPIYFWGLFGSPLPSRHPMHVVVGKPIELKKSPQPTNEEVTEVHNQ 231
LP + V +G+PI + + E+ E+ +
Sbjct: 149 ---------------------KLPRPGRVTVRIGEPIPPEGL-ELAEEDRKELREK 182
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 36.1 bits (84), Expect = 0.010
Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 26/182 (14%)
Query: 56 PIGV---VALADLTGFMPL-PKIKVLGSSAVFYTPFLRHIW---TWLGTTPATKKNF--- 105
P G+ + LADL G + P +++L + + P LR ++ L A KN
Sbjct: 31 PFGILDGLILADLLG--SVRPDVRILANQLLSKIPELRDLFIPVDPLEGRAALAKNRESL 88
Query: 106 ---ISLLAAGYSCILVPGGVQETFHMEHGSEVAFLKTRRGFVRIAMEMGRPLVPVFCYGQ 162
+ L G + I+ P G T G V+ R+A + P+VPV+ G+
Sbjct: 89 REALRHLKNGGALIIFPAGRVSTASPPFG-RVSDRPWNPFVARLARKAKAPVVPVYFSGR 147
Query: 163 SNVYKWWKPGGKLYLQFSRAIKFTPIYFWGLFGSPLPSRHPMHVVVGKPIELKKSPQPTN 222
++ + + G ++ T + L + + VG+PI ++ + +
Sbjct: 148 NS--RLFYLAGLIHPTLR-----TLLLPRELLNK---RGKTIRIRVGRPIPPEELARFED 197
Query: 223 EE 224
E
Sbjct: 198 AE 199
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 32.6 bits (74), Expect = 0.15
Identities = 37/170 (21%), Positives = 54/170 (31%), Gaps = 37/170 (21%)
Query: 82 VFYTPFLRHIWTWLGTTPATKKNFISLLAAGYSCILVPGGVQETFHME-----HGSEVAF 136
+F P L + LG P ++N L GG E G E+
Sbjct: 99 LFKVPLLGWLLRLLGAIPVDRENPDDETLRAAVARLKAGGRSLVIFPEGTRSRGGEELLP 158
Query: 137 LKTRRGFVRIAMEMGRPLVPVFCYGQSNVYKWWKPGGKLYLQFSRAIKFTPIYFWGLFGS 196
K RG R+A+E G P+VPV + LF
Sbjct: 159 FK--RGAARLALEAGVPIVPV----------------------------AIVGAEELF-- 186
Query: 197 PLPSRHPMHVVVGKPIELKKSPQPTNEEVTEVHNQFVEALRDLFERHKAQ 246
P + + V +G PI++ P+P E+ E Q + A
Sbjct: 187 PSLKKGKVKVRIGPPIDISALPEPLLPELAEAVEQLARPILLELLPRYAA 236
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 30.8 bits (70), Expect = 0.23
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 72 PKIKVLGSSAVFYTPFLRHIWTWLGTTPATKKN----------FISLLAAGYSCILVPGG 121
+++ + +FY P L + LG + N + LL G ++ P G
Sbjct: 25 GRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRKARAALREAVELLKEGEWLLIFPEG 84
Query: 122 VQETFHMEHGSEVAFLKTRRGFVRIAMEMGRPLVPVFCYG 161
T L ++G R+A+E G P+VPV G
Sbjct: 85 ---TRSRPG----KLLPFKKGAARLALEAGVPIVPVAIRG 117
>gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4,
extended (e) SDRs. UDP-glucose 4 epimerase (aka
UDP-galactose-4-epimerase), is a homodimeric extended
SDR. It catalyzes the NAD-dependent conversion of
UDP-galactose to UDP-glucose, the final step in Leloir
galactose synthesis. This subgroup is comprised of
bacterial proteins, and includes the Staphylococcus
aureus capsular polysaccharide Cap5N, which may have a
role in the synthesis of UDP-N-acetyl-d-fucosamine. This
subgroup has the characteristic active site tetrad and
NAD-binding motif of the extended SDRs. Extended SDRs
are distinct from classical SDRs. In addition to the
Rossmann fold (alpha/beta folding pattern with a central
beta-sheet) core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids. Extended SDRs are a
diverse collection of proteins, and include isomerases,
epimerases, oxidoreductases, and lyases; they typically
have a TGXXGXXG cofactor binding motif. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 303
Score = 30.8 bits (70), Expect = 0.71
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 107 SLLAAGYSCILVPGGVQETFHMEHGSEVAFLKTRRGFVRIAMEMGRPL----VPVFCY 160
+L+ A Y CI +P TF + S+ + T I +G+P VP
Sbjct: 203 NLVDAIYLCISLPKAANGTFLV---SDGPPVSTAELVDEIRRALGKPTRLLPVPAGLL 257
>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of
cis-aconitate from citrate as part of the TCA cycle.
Aconitase B catalytic domain. Aconitate hydratase B
catalyses the formation of cis-aconitate from citrate as
part of the TCA cycle. Aconitase has an active (4FE-4S)
and an inactive (3FE-4S) form. The active cluster is
part of the catalytic site that interconverts citrate,
cis-aconitase and isocitrate. The domain architecture of
aconitase B is different from other aconitases in that
the catalytic domain is normally found at C-terminus for
other aconitases, but it is at N-terminus for B family.
It also has a HEAT domain before domain 4 which plays a
role in protein-protein interaction. This alignment is
the core domain including domains 1,2 and 3.
Length = 436
Score = 30.5 bits (69), Expect = 0.83
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 42 DRAYVFGYEPHSVLPIGV--------VALADLTGFMPLP 72
G + H+ PIG+ VA A TG MPL
Sbjct: 106 PDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLD 144
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 29.3 bits (66), Expect = 1.2
Identities = 32/187 (17%), Positives = 59/187 (31%), Gaps = 35/187 (18%)
Query: 16 SRYICKHACSYFPITLHVEDINAFHPDRAYVFGYEPHSVLPIGVVALADLTGFMPLPKIK 75
RY+ + + + L V+ +F HS + L L +
Sbjct: 1 FRYLLLNFFGF--VRLEVKGPPPPPGGGPVLF-VSNHSSW-WDGLILFLLLERGLRRDVY 56
Query: 76 VLGS--SAVFYTPFLRHIWTWLGTTP----------ATKKNFISLLAAGYSCILV-PGGV 122
L Y PF +T LG + K LL+ S + + P G
Sbjct: 57 GLMDEELLERY-PF----FTRLGAFSVDRDSPRSAAKSLKYVARLLSKPGSVVWIFPEGT 111
Query: 123 QETFHMEHGSEVAFLKTRRGFVRIAMEMGRPLVPVFCYGQSNVYKWW--KPGGKLYLQFS 180
+ L+ + G +A + G P+VPV Y + + +++++
Sbjct: 112 ------RTRRDKRPLQFKPGVAHLAEKAGVPIVPVALR-----YTFELFEQFPEIFVRIG 160
Query: 181 RAIKFTP 187
I +
Sbjct: 161 PPIPYAE 167
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 29.9 bits (68), Expect = 1.6
Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 26/141 (18%)
Query: 85 TPFLRHIWTWLGTTP---ATKKNFISL----LAAGYS-CILVPGGVQETFHMEHGSEVAF 136
+L+ + G P K + L G CI G + + F
Sbjct: 477 KWYLKWFFKLFGVIPISSGGSKESLEFIRKALDDGEVVCIFPEGAITRNGQLN-----EF 531
Query: 137 LKTRRGFVRIAMEMGRPLVPVF---CYGQSNVYKWWKPGGKLYLQFSRAIKFTPIYFWGL 193
+RGF I P++P + +G GK ++ I + P+
Sbjct: 532 ---KRGFELIVKGTDVPIIPFYIRGLWGSIFSRA----SGKFLWRWPTRIPY-PVTV--A 581
Query: 194 FGSPLPSRHPMHVVVGKPIEL 214
FG P+P+ H V EL
Sbjct: 582 FGKPMPAHSTAHEVKQAVFEL 602
>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase. The
sequences in this family are members of the pfam01593
superfamily of flavin-containing amine oxidases which
include the phytoene desaturases. These sequences also
include a FAD-dependent oxidoreductase domain,
pfam01266. The genes of the family modeled here are
generally in the same locus with genes involved in the
biosynthesis and elaboration of squalene, the
condensation product of the polyisoprenoid farnesyl
pyrophosphate. This gene and its association with hopene
biosynthesis in Zymomonas mobilis has been noted in the
literature where the gene symbol hpnE was assigned. This
gene is also found in contexts where the downstream
conversion of squalene to hopenes is not evidence. The
precise nature of the reaction catalyzed by this enzyme
is unknown at this time.
Length = 411
Score = 29.3 bits (66), Expect = 1.9
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 25/102 (24%)
Query: 134 VAFLKTRRGFVR-------IAMEMGRPLVPVFCYGQSNVYKW------------WKPGGK 174
+L +R G VR I G V ++ PG
Sbjct: 196 RRWLDSRGGEVRLGTRVRSIEANAGGIRALVLAGEETLPADAVVLAVPPRHAASLLPGED 255
Query: 175 LYLQFSRAIKFTPI---YFWGLFGSPLPSRHPMHVVVGKPIE 213
L + A+ ++PI + + PM +VG +
Sbjct: 256 LGALLT-ALGYSPITTVHLR--LDRAVRLPAPMVGLVGGLAQ 294
>gnl|CDD|234639 PRK00109, PRK00109, Holliday junction resolvase-like protein;
Reviewed.
Length = 138
Score = 28.2 bits (64), Expect = 2.2
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 201 RHPMHVVVGKPIELKKSPQPTNEEVTEVHNQFVEALRDLFE 241
P +VVG P+ + + P E + F L F
Sbjct: 53 WQPDGLVVGLPLNMDGTEGPRTERARK----FANRLEGRFG 89
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 28.0 bits (63), Expect = 2.4
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 17/88 (19%)
Query: 82 VFYTPFLRHIWTWLGTTPATKKNF----------ISLLAAGYSCILVPGGVQETFHMEHG 131
+ P L + LG +KN + LL G ++ P G +
Sbjct: 50 LLNLPLLGWLMRLLGCIFIDRKNAKDAANTLEYLVELLREGELVLIFPEGTRS------- 102
Query: 132 SEVAFLKTRRGFVRIAMEMGRPLVPVFC 159
L ++G R+A E G P+VPV
Sbjct: 103 RGGELLPFKKGAFRLAREAGVPIVPVAI 130
>gnl|CDD|214893 smart00896, FDX-ACB, Ferredoxin-fold anticodon binding domain.
This is the anticodon binding domain found in some
phenylalanyl tRNA synthetases. The domain has a
ferredoxin fold, consisting of an alpha+beta sandwich
with anti-parallel beta-sheets (beta-alpha-beta x2).
Length = 93
Score = 27.4 bits (62), Expect = 2.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 221 TNEEVTEVHNQFVEALRDLF 240
T+EEV +H++ V AL F
Sbjct: 69 TDEEVNAIHDKIVAALEKKF 88
>gnl|CDD|163562 TIGR03850, bind_CPR_0540, carbohydrate ABC transporter
substrate-binding protein, CPR_0540 family. Members of
this protein are the substrate-binding protein of a
predicted carbohydrate transporter operon, together with
permease subunits of ABC transporter homology families.
This substrate-binding protein frequently co-occurs in
genomes with a family of disaccharide phosphorylases,
TIGR02336, suggesting that the molecule transported will
include
beta-D-galactopyranosyl-(1->3)-N-acetyl-D-glucosamine
and related carbohydrates. Members of this family are
sporadically strain by strain, often in species with a
human host association, including Propionibacterium
acnes and Clostridium perfringens, and Bacillus cereus
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 28.9 bits (65), Expect = 2.8
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 16/54 (29%)
Query: 67 GFMPLPKIKVLGSSAVFYTPFLRHIWTWLGTTPATKKN------FISLLAAGYS 114
G LP +K G + F +W PA KN FI+ L YS
Sbjct: 304 GMTALPAVKEGGDRYSY--TFFEQMW-----IPAAAKNKDLAKEFIAFL---YS 347
>gnl|CDD|223886 COG0816, COG0816, Predicted endonuclease involved in recombination
(possible Holliday junction resolvase in Mycoplasmas and
B. subtilis) [DNA replication, recombination, and
repair].
Length = 141
Score = 28.0 bits (63), Expect = 2.9
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 206 VVVGKPIELKKSPQPTNEEVTEVHNQFVEALRDLF 240
VVVG P+ + + P E + F E L+ F
Sbjct: 57 VVVGLPLNMDGTEGPRAELARK----FAERLKKRF 87
>gnl|CDD|215925 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family
includes relatives of the G-domain of the SRP54 family
of proteins.
Length = 196
Score = 28.3 bits (64), Expect = 3.1
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 5 IDEHSKLGRSLS-RYICKHACSYFPITLHVEDINAFHPDR 43
+D +K G +LS + + ++D+ F P+R
Sbjct: 150 LDGDAKGGAALSIAAETGKPIKFIGVGEKIDDLEPFDPER 189
>gnl|CDD|236424 PRK09238, PRK09238, bifunctional aconitate hydratase
2/2-methylisocitrate dehydratase; Validated.
Length = 835
Score = 28.6 bits (65), Expect = 3.5
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
Query: 52 HSVLPIGV--------VALADLTGFMPLP 72
H+ PIG+ VA A TG MPL
Sbjct: 488 HTRFPIGISFPAGSGLVAFAAATGVMPLD 516
>gnl|CDD|153281 cd07597, BAR_SNX8, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexin 8. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. SNX8 and the yeast counterpart Mvp1p
are involved in sorting and delivery of late-Golgi
proteins, such as carboxypeptidase Y, to vacuoles. BAR
domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions.
Length = 246
Score = 28.0 bits (63), Expect = 4.2
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 222 NEEVTEVHNQFVE---ALRDLFERHKAQVG 248
+ V E ++ +LRDLFERH+
Sbjct: 115 EDGVLEKLKLQLDLLVSLRDLFERHEKLSL 144
>gnl|CDD|173550 PTZ00357, PTZ00357, methyltransferase; Provisional.
Length = 1072
Score = 28.5 bits (63), Expect = 4.4
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 139 TRRGFVRIAMEMGRPLVPVFCYGQSNVYKWWKPGGKLYLQFSRAIKFTPIYFWGLFGSPL 198
TR F ++ PL P+ + S VY+ ++ + Y Q+ A+ F + W G+
Sbjct: 615 TRDVFASFEGQLQLPLQPLSHHLSSGVYEVFERDARKYRQYREAV-FHYVRDWYAAGAEQ 673
Query: 199 PSRHPMHVVVGKPIELKKSPQPTNEEVT 226
H K +++ P P+ +E T
Sbjct: 674 QHAHQNSEFFAKHGVMQRVPVPSPDERT 701
>gnl|CDD|109982 pfam00947, Pico_P2A, Picornavirus core protein 2A. This protein
is a protease, involved in cleavage of the polyprotein.
Length = 127
Score = 27.3 bits (61), Expect = 5.0
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 18 YICKHACSYFPITLHVEDI-----NAFHPDRAYVFGYEPHSVLPIG 58
Y CK Y+P+T + + ++P R Y+ H +L +G
Sbjct: 45 YYCKSRNKYYPVTFTGPTLIEIEESEYYPAR-----YQSHLLLGVG 85
>gnl|CDD|112109 pfam03279, Lip_A_acyltrans, Bacterial lipid A biosynthesis
acyltransferase.
Length = 295
Score = 28.0 bits (63), Expect = 5.2
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 16/90 (17%)
Query: 103 KNFISLLAAGYSCILVPGGVQETFHMEHGSEVAFLKTRR----GFVRIAMEMGRPLVPVF 158
K I L G +P + + V F T + ++A + G ++PVF
Sbjct: 182 KGLIKALRQGEVVYYLP---DQDLGPKDSVFVPFFGTPKATTTSPAKLARKTGAAVIPVF 238
Query: 159 CYGQSNVYKWWKPGGKLY-LQFSRAIKFTP 187
W G Y A+ TP
Sbjct: 239 P--------WRNGDGSGYTAIVHPALDLTP 260
>gnl|CDD|201071 pfam00194, Carb_anhydrase, Eukaryotic-type carbonic anhydrase.
Length = 238
Score = 27.3 bits (61), Expect = 7.0
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 71 LPKIKVLGSSAVFYTPF--------LRHIWTWLG--TTP 99
L IK G SA F T F LR WT+ G TTP
Sbjct: 142 LDSIKTKGKSATF-TNFDPSDLLPSLRDYWTYPGSLTTP 179
>gnl|CDD|131091 TIGR02036, dsdC, D-serine deaminase transcriptional activator.
This family, part of the LysR family of transcriptional
regulators, activates transcription of the gene for
D-serine deaminase, dsdA. Trusted members of this family
so far are found adjacent to dsdA and only in
Gammaproteobacteria, including E. coli, Vibrio cholerae,
and Colwellia psychrerythraea [Regulatory functions, DNA
interactions].
Length = 302
Score = 27.2 bits (60), Expect = 9.1
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 12/58 (20%)
Query: 212 IELKKSPQPTNEEVTEVHNQFVEALRDLFER------------HKAQVGYPDLELKIL 257
LK S N+E+ ++ NQ + L+ R YP + L +L
Sbjct: 73 WALKSSLDTLNQEILDIKNQELSGTLTLYSRPSFAQCWLVPRIGDFTRRYPSISLTVL 130
>gnl|CDD|223978 COG1049, AcnB, Aconitase B [Energy production and conversion].
Length = 852
Score = 27.4 bits (61), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 48 GYEPHSVLPIGV--------VALADLTGFMPLP 72
G + H+ PIG+ VA A TG MPL
Sbjct: 486 GGDSHTRFPIGISFPAGSGLVAFAAATGVMPLD 518
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.142 0.459
Gapped
Lambda K H
0.267 0.0879 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,753,603
Number of extensions: 1330439
Number of successful extensions: 1813
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1800
Number of HSP's successfully gapped: 35
Length of query: 257
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 162
Effective length of database: 6,723,972
Effective search space: 1089283464
Effective search space used: 1089283464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (25.8 bits)