RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 025152
         (257 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.0 bits (85), Expect = 0.006
 Identities = 53/316 (16%), Positives = 92/316 (29%), Gaps = 110/316 (34%)

Query: 5   IDEHSKLGRSLSRYICKHACSYFPITLHVEDINAF------HPDRAYVFGYEPHSVLP-I 57
           I   ++    L R     A   F       +I  +       PD+ Y     P S  P I
Sbjct: 188 IKFSAETLSELIR-TTLDAEKVFT---QGLNILEWLENPSNTPDKDY-LLSIPIS-CPLI 241

Query: 58  GVVALADLTGFMPLPKIKVLGSSAVFYTPF-LRHIWTWLGTTPATKKNFISLLAAGYSCI 116
           GV+ LA           K+LG     +TP  LR      G T  ++     L+ A     
Sbjct: 242 GVIQLAHYVVTA-----KLLG-----FTPGELRSYLK--GATGHSQ----GLVTA---VA 282

Query: 117 LVPGGVQETFH--MEHGSEVAF---LKTRRGFVRIAME-----------------M---- 150
           +      E+F   +     V F   ++    +   ++                  M    
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342

Query: 151 GRPLVPVFCY-GQSNVYKWWKPGGKLYLQFSRAIKFTPIYFWGLFGSPLPSRHPMHVVVG 209
                 V  Y  ++N +     G ++ +               L       ++   VV G
Sbjct: 343 NLTQEQVQDYVNKTNSHL--PAGKQVEI--------------SLVNGA---KN--LVVSG 381

Query: 210 KPIEL---------KKSP----Q---PTNEEVTEVHNQF--VEA------LRDLFERHKA 245
            P  L          K+P    Q   P +E   +  N+F  V +      L    +    
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441

Query: 246 QVGYPDL-----ELKI 256
            +   ++     +++I
Sbjct: 442 DLVKNNVSFNAKDIQI 457



 Score = 37.0 bits (85), Expect = 0.006
 Identities = 29/127 (22%), Positives = 40/127 (31%), Gaps = 34/127 (26%)

Query: 41   PDRAYVFGYEPHSVLPIG-VVALADLTGFMPLPK-IKVLGSSAVFYTPFLRHIWTWLGTT 98
            P  A   G   HS+   G   ALA L   M +   ++V+         F R      G T
Sbjct: 1754 PADATFAG---HSL---GEYAALASLADVMSIESLVEVV---------FYR------GMT 1792

Query: 99   PATKKNFISLLAAGYSCILV-PGGVQETFHMEHGSEVAFLKTRRGFVRIAMEMGRPLVPV 157
                     L  + Y  I + PG V  +F  E    V          R+    G  +  V
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV--------ERVGKRTGWLVEIV 1844

Query: 158  -F-CYGQ 162
             +    Q
Sbjct: 1845 NYNVENQ 1851


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.96
 Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 9/28 (32%)

Query: 73  KIKVLGSSAVFYTPFLRHIWTWLGTTPA 100
            +K L +S   Y            + PA
Sbjct: 21  ALKKLQASLKLYAD---------DSAPA 39


>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
           HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
           1k47_A* 3gon_A*
          Length = 337

 Score = 28.0 bits (62), Expect = 2.9
 Identities = 9/88 (10%), Positives = 23/88 (26%), Gaps = 8/88 (9%)

Query: 159 CYGQSNVYKWWKPGGKLYLQFSRAIKFTPIYFWGLFGSPLPSRHPMHVVVGKPIELKKSP 218
                 +Y+ +             +       WG   S +        +VG      K  
Sbjct: 157 AAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGW----TKEV 212

Query: 219 QPTNEEVTEVHN----QFVEALRDLFER 242
             ++  V ++       F+ + ++    
Sbjct: 213 AVSSHMVQQIKQNINQNFLTSSKETVVS 240


>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
          {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
          Length = 279

 Score = 27.7 bits (62), Expect = 3.8
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 30 TLHV--EDINAFHPDRAYVFGYEPHSVLPIGVVALADLTGFMPLPKIKV 76
          ++ V   D+  F PD A +   +P  V+     A+ ++        + +
Sbjct: 43 SIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRKNVDLNI 91


>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn
           complex, rRNA processing, transferase; HET: ADP; 1.75A
           {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB:
           1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
          Length = 282

 Score = 27.2 bits (60), Expect = 5.7
 Identities = 9/50 (18%), Positives = 19/50 (38%)

Query: 194 FGSPLPSRHPMHVVVGKPIELKKSPQPTNEEVTEVHNQFVEALRDLFERH 243
              P       + V+ + I+ K+  +   E   EV +  +E +   + R 
Sbjct: 164 LAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG 213


>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of
           allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio
           cholerae o1 biovar el tor}
          Length = 243

 Score = 26.4 bits (59), Expect = 9.9
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 12/68 (17%)

Query: 32  HVEDINAFHPDRAYVFGYEPHSVLPIGVVALADLTGFMPLPKIKVLGSSAVFY----TPF 87
               + A       V+  +  +           L G M L ++ +      FY      F
Sbjct: 161 ETAQLIAQQGWMQQVWYRDESAD--------DVLQGEMQLAELILPIEDGDFYLCGPIGF 212

Query: 88  LRHIWTWL 95
           ++++   L
Sbjct: 213 MQYVVKQL 220


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.142    0.459 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,216,354
Number of extensions: 258531
Number of successful extensions: 993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 17
Length of query: 257
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,133,061
Effective search space: 681955065
Effective search space used: 681955065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)