RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025152
         (257 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 29.2 bits (65), Expect = 0.51
 Identities = 24/210 (11%), Positives = 47/210 (22%), Gaps = 41/210 (19%)

Query: 56  PIGVVALADLTGFMPLPKIKVLGSSAVFYTPFLRHIWTWLGTTPATKKNFIS-------- 107
           P  +  L + T          +    V   P  +             K  +         
Sbjct: 144 PAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTET 203

Query: 108 --------------LLAAGYSCILV-PGGVQETFHMEHGSEV--AFLKTRRGFVRIAMEM 150
                         LL  G   I + P G ++      G      F  +    +R  ++ 
Sbjct: 204 KRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQH 263

Query: 151 GRPLVPVFCYGQSNVYKWWKPGGKLYLQFSRAIKFTPIYFWGLFGSPLPSRHPMHVVVGK 210
                 +F            P         +                + + +   + V  
Sbjct: 264 SDVPGHLFPLALLCHDIMPPPSQVEIEIGEK---------------RVIAFNGAGLSVAP 308

Query: 211 PIELKKSPQPTNEEVTEVHNQFVEALRDLF 240
            I  ++      +   EV   + +AL D  
Sbjct: 309 EISFEEIAATH-KNPEEVREAYSKALFDSV 337


>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA,
          N-terminal domain {Synechococcus elongatus [TaxId:
          32046]}
          Length = 105

 Score = 26.3 bits (58), Expect = 1.8
 Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 13/78 (16%)

Query: 5  IDEHSKLGRSLS--RYICKHACSYFPITLHVEDINAFHPDRAYVFGYEPHSVLPIGVVAL 62
          +D        +   + I     +  PI+L V ++    P        E +      +V  
Sbjct: 19 VDTRPLSQHIVQRVKNILAAVEATVPISLQVINVAD-QPQLV-----EYY-----RLVVT 67

Query: 63 ADLTGFMPLPKIKVLGSS 80
            L    P  +  + G  
Sbjct: 68 PALVKIGPGSRQVLSGID 85


>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
           1, N-terminal domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 629

 Score = 25.8 bits (56), Expect = 6.2
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 209 GKPIELKKSPQPTNEEVTEVHNQFVEALRDLFERHKAQV 247
           G+ + LK    PT +E+  V  Q+V     +F+    ++
Sbjct: 580 GQQVFLKD-IWPTRDEIQAVERQYVI--PGMFKEVYQKI 615


>d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV
           {Thermus thermophilus, EF-G-2 [TaxId: 274]}
          Length = 115

 Score = 25.0 bits (54), Expect = 6.2
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 111 AGYSCILVPGGVQET-FHMEHGSEVAF-LKTRRGFVRIAMEMGRP 153
           AG+  +     V    +H    S++AF +     F +  M    P
Sbjct: 72  AGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAF-KKVMAEAHP 115


>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
           recognition protein Ffh {Archaeon Acidianus ambivalens
           [TaxId: 2283]}
          Length = 211

 Score = 25.1 bits (54), Expect = 7.7
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 5   IDEHSKLGRSLS-RYICKHACSYFPITLHVEDINAFHPDR 43
           +D  +K G +LS          +      ++++  F+P R
Sbjct: 163 MDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRR 202


>d1lbva_ e.7.1.1 (A:) Archaeal inositol
           monophosphatase/fructose-1,6-bisphosphatase {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 252

 Score = 25.0 bits (53), Expect = 9.8
 Identities = 14/72 (19%), Positives = 21/72 (29%)

Query: 73  KIKVLGSSAVFYTPFLRHIWTWLGTTPATKKNFISLLAAGYSCILVPGGVQETFHMEHGS 132
           ++++ GS+A     F    +         K   I   AAG       GG       E   
Sbjct: 165 RMRIFGSAATELCFFADGSFDCFLDIRPGKMLRIYDAAAGVFIAEKAGGKVTELDGESLG 224

Query: 133 EVAFLKTRRGFV 144
              F    R  +
Sbjct: 225 NKKFDMQERLNI 236


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.142    0.459 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,056,397
Number of extensions: 50951
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 9
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.2 bits)