BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025153
MQSASVSAALPSSSCHYCYPVPNRFLHFRNLHLKKNLNSLSLSRNQIHAKNFCSLTLPTA
NSFSKEQEENLRKDNKLHPDQNHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRYNKDK
YWTVLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQR
RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGNCLFTAYL
LIWLLLLFFSQCLCIWF

High Scoring Gene Products

Symbol, full name Information P value
AT3G58830 protein from Arabidopsis thaliana 3.9e-44

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025153
        (257 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2099104 - symbol:AT3G58830 "AT3G58830" species...   465  3.9e-44   1


>TAIR|locus:2099104 [details] [associations]
            symbol:AT3G58830 "AT3G58830" species:3702 "Arabidopsis
            thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] EMBL:CP002686
            Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
            GO:GO:0016787 eggNOG:COG1011 InterPro:IPR006549 InterPro:IPR010021
            Pfam:PF09419 TIGRFAMs:TIGR01662 TIGRFAMs:TIGR01668 EMBL:BT004819
            EMBL:AK227892 IPI:IPI00546835 RefSeq:NP_191442.2
            ProteinModelPortal:Q84VV0 SMR:Q84VV0 PaxDb:Q84VV0 PRIDE:Q84VV0
            EnsemblPlants:AT3G58830.1 GeneID:825052 KEGG:ath:AT3G58830
            KO:K07015 OMA:SSELIMV ProtClustDB:CLSN2680928 Genevestigator:Q84VV0
            Uniprot:Q84VV0
        Length = 343

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 99/186 (53%), Positives = 120/186 (64%)

Query:    50 KNFCSLTLPTANSFSKEQEENLRKDNKLH---PDQNHTFL-DQFYSSADTNKLGNQDPES 105
             K  CS   P+++S S  Q     +  K +   P    +FL  QF S  +     N+ PE 
Sbjct:    34 KPICSPPPPSSSSSSPLQTTTTHRSQKQNLRLPTFEDSFLLYQFSSPTEDPGFSNRIPEQ 93

Query:   106 QNQEQDEE--PRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLALP 163
              + E  E   PR   +     + +NMWW+ LKAALGQRIN+EGIVSS  V  KDR   LP
Sbjct:    94 FDGEPRELVLPRVEDNNKGLAISSNMWWADLKAALGQRINIEGIVSSVSVVVKDRQFVLP 153

Query:   164 HVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAV 223
             HV+V D+RYIDW  L+R+GFKGVVFDKDNTLTAPYSL +W PL  SIE+CK+VFGHDIAV
Sbjct:   154 HVSVKDLRYIDWEVLKRKGFKGVVFDKDNTLTAPYSLAIWPPLRPSIERCKAVFGHDIAV 213

Query:   224 FSNSAG 229
             FSNSAG
Sbjct:   214 FSNSAG 219


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      257       209   0.00079  112 3  11 22  0.49    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  208 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.57u 0.14s 24.71t   Elapsed:  00:00:01
  Total cpu time:  24.57u 0.14s 24.71t   Elapsed:  00:00:01
  Start:  Thu May  9 18:24:57 2013   End:  Thu May  9 18:24:58 2013

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