BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025153
         (257 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KE2|A Chain A, Crystal Structure Of A Duf2131 Family Protein (Sama_2911)
           From Shewanella Amazonensis Sb2b At 2.50 A Resolution
 pdb|3KE2|B Chain B, Crystal Structure Of A Duf2131 Family Protein (Sama_2911)
           From Shewanella Amazonensis Sb2b At 2.50 A Resolution
 pdb|3KE2|C Chain C, Crystal Structure Of A Duf2131 Family Protein (Sama_2911)
           From Shewanella Amazonensis Sb2b At 2.50 A Resolution
          Length = 117

 Score = 32.0 bits (71), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)

Query: 198 YSLTLWGPLSSS-----IEQCKSVFGHDIAVFSNSAGN 230
           Y +  WGP+SS+     +++ KS+ G D AV   +AGN
Sbjct: 78  YRIRTWGPISSAWXDTHVDEVKSLLGVDDAVGQATAGN 115


>pdb|2B5U|A Chain A, Crystal Structure Of Colicin E3 V206c Mutant In Complex
           With Its Immunity Protein
 pdb|2B5U|C Chain C, Crystal Structure Of Colicin E3 V206c Mutant In Complex
           With Its Immunity Protein
          Length = 551

 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 58  PTANSFSKEQEENLRKDNKLHP-DQNHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRY 116
           P  N   K +     K  K++  D  H  L + Y ++D   LG+ DP++ NQ +  +P+ 
Sbjct: 487 PKQNGGGKRKRWTGDKGRKIYEWDSQHGEL-EGYRASDGQHLGSFDPKTGNQLKGPDPKR 545

Query: 117 NKDKY 121
           N  KY
Sbjct: 546 NIKKY 550


>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
           Immunity Protein
 pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
           Immunity Protein
          Length = 551

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 58  PTANSFSKEQEENLRKDNKLHP-DQNHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRY 116
           P  N   K +     K  K++  D  H  L + Y ++D   LG+ DP++ NQ +  +P+ 
Sbjct: 487 PKQNGGGKRKRWTGDKGRKIYEWDSQHGEL-EGYRASDGQHLGSFDPKTGNQLKGPDPKR 545

Query: 117 NKDKY 121
           N  KY
Sbjct: 546 NIKKY 550


>pdb|1E44|B Chain B, Ribonuclease Domain Of Colicin E3 In Complex With Its
           Immunity Protein
          Length = 96

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 58  PTANSFSKEQEENLRKDNKLHP-DQNHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRY 116
           P  N   K +     K  K++  D  H  L + Y ++D   LG+ DP++ NQ +  +P+ 
Sbjct: 32  PKQNGGGKRKRWTGDKGRKIYEWDSQHGEL-EGYRASDGQHLGSFDPKTGNQLKGPDPKR 90

Query: 117 NKDKY 121
           N  KY
Sbjct: 91  NIKKY 95


>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
          Length = 600

 Score = 26.9 bits (58), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 17/60 (28%)

Query: 128 NMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVV 187
           N+WW+     LGQ +NV  +         D  LA+ H   PD+     A+  R G K VV
Sbjct: 58  NLWWAHRTGVLGQGVNVAVV---------DDGLAIAH---PDL-----ADNVRPGSKNVV 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,475,233
Number of Sequences: 62578
Number of extensions: 253856
Number of successful extensions: 539
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 9
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)