Query 025153
Match_columns 257
No_of_seqs 116 out of 466
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 03:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09419 PGP_phosphatase: Mito 100.0 3.8E-28 8.3E-33 207.8 10.3 102 144-246 1-105 (168)
2 KOG2961 Predicted hydrolase (H 99.9 6.7E-23 1.5E-27 177.6 7.4 97 140-237 1-99 (190)
3 COG2179 Predicted hydrolase of 99.7 6.2E-19 1.3E-23 153.1 3.4 73 158-231 3-75 (175)
4 TIGR01668 YqeG_hyp_ppase HAD s 99.2 1.8E-11 4E-16 101.9 7.6 70 159-229 1-70 (170)
5 PTZ00445 p36-lilke protein; Pr 98.5 1.9E-07 4E-12 84.3 5.5 54 175-229 35-102 (219)
6 PRK06769 hypothetical protein; 98.2 1.5E-06 3.3E-11 72.8 3.9 48 181-229 2-55 (173)
7 TIGR01662 HAD-SF-IIIA HAD-supe 98.0 6.3E-06 1.4E-10 64.5 3.5 49 184-233 1-56 (132)
8 TIGR01681 HAD-SF-IIIC HAD-supe 97.8 2.8E-05 6E-10 62.4 4.9 43 184-227 1-54 (128)
9 TIGR00213 GmhB_yaeD D,D-heptos 97.8 2.6E-05 5.7E-10 64.8 4.3 46 184-230 2-54 (176)
10 cd01427 HAD_like Haloacid deha 97.7 4.9E-05 1.1E-09 56.0 4.5 43 185-228 1-50 (139)
11 TIGR01664 DNA-3'-Pase DNA 3'-p 97.7 5.9E-05 1.3E-09 63.5 5.2 48 182-230 12-70 (166)
12 TIGR01656 Histidinol-ppas hist 97.7 6.2E-05 1.3E-09 61.0 4.7 45 184-229 1-54 (147)
13 TIGR01457 HAD-SF-IIA-hyp2 HAD- 97.5 0.00011 2.4E-09 64.9 5.0 47 183-232 1-47 (249)
14 PF08645 PNK3P: Polynucleotide 97.4 0.00045 9.8E-09 58.1 7.2 66 184-250 1-77 (159)
15 PF13344 Hydrolase_6: Haloacid 97.4 0.00014 3.1E-09 56.8 3.9 43 186-231 1-43 (101)
16 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.4 0.00025 5.5E-09 63.0 5.4 48 183-231 1-50 (257)
17 TIGR01452 PGP_euk phosphoglyco 97.4 0.00022 4.7E-09 63.6 4.9 44 183-229 2-45 (279)
18 TIGR01686 FkbH FkbH-like domai 97.4 0.00029 6.3E-09 64.4 5.4 45 183-228 3-57 (320)
19 PRK01158 phosphoglycolate phos 97.3 0.00034 7.4E-09 59.0 5.2 43 183-227 3-45 (230)
20 TIGR01487 SPP-like sucrose-pho 97.3 0.00048 1E-08 58.3 5.6 44 183-228 1-44 (215)
21 PRK09484 3-deoxy-D-manno-octul 97.3 0.00024 5.2E-09 60.0 3.7 55 173-228 10-74 (183)
22 TIGR01484 HAD-SF-IIB HAD-super 97.3 0.00053 1.2E-08 57.1 5.4 42 186-228 2-43 (204)
23 PRK10444 UMP phosphatase; Prov 97.2 0.00048 1E-08 61.5 5.3 46 183-231 1-46 (248)
24 PLN02645 phosphoglycolate phos 97.2 0.00089 1.9E-08 61.1 6.7 47 182-231 27-73 (311)
25 PRK00192 mannosyl-3-phosphogly 97.2 0.00072 1.6E-08 59.7 5.6 45 182-228 3-47 (273)
26 TIGR01684 viral_ppase viral ph 97.1 0.00068 1.5E-08 64.0 5.5 95 132-229 71-173 (301)
27 PRK10530 pyridoxal phosphate ( 97.1 0.00076 1.6E-08 58.1 5.3 43 182-226 2-44 (272)
28 PRK10513 sugar phosphate phosp 97.1 0.00077 1.7E-08 58.5 5.3 42 182-225 2-43 (270)
29 PRK08942 D,D-heptose 1,7-bisph 97.1 0.00057 1.2E-08 56.8 4.2 46 183-229 3-56 (181)
30 PTZ00174 phosphomannomutase; P 97.1 0.00084 1.8E-08 58.9 5.4 45 181-227 3-47 (247)
31 PF08282 Hydrolase_3: haloacid 97.1 0.00087 1.9E-08 55.0 5.2 41 186-228 1-41 (254)
32 PRK10976 putative hydrolase; P 97.1 0.00089 1.9E-08 58.1 5.3 43 183-227 2-44 (266)
33 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.1 0.001 2.3E-08 57.9 5.6 47 181-230 6-52 (242)
34 PHA03398 viral phosphatase sup 97.1 0.00027 5.8E-09 66.7 2.0 94 132-228 73-174 (303)
35 TIGR01670 YrbI-phosphatas 3-de 97.1 0.00075 1.6E-08 55.6 4.3 43 183-228 1-54 (154)
36 PRK15126 thiamin pyrimidine py 97.0 0.0013 2.9E-08 57.5 5.3 43 183-227 2-44 (272)
37 COG0561 Cof Predicted hydrolas 96.9 0.0015 3.2E-08 56.8 5.2 45 182-228 2-46 (264)
38 COG0647 NagD Predicted sugar p 96.9 0.0012 2.7E-08 60.9 4.9 50 181-233 6-55 (269)
39 TIGR02463 MPGP_rel mannosyl-3- 96.9 0.0018 3.8E-08 54.8 5.0 41 186-228 2-42 (221)
40 PRK03669 mannosyl-3-phosphogly 96.8 0.0021 4.5E-08 56.8 5.5 46 181-228 5-50 (271)
41 TIGR01689 EcbF-BcbF capsule bi 96.8 0.0045 9.7E-08 51.3 7.0 62 183-245 1-74 (126)
42 TIGR01460 HAD-SF-IIA Haloacid 96.8 0.0018 3.8E-08 56.8 4.6 44 186-232 1-44 (236)
43 TIGR01456 CECR5 HAD-superfamil 96.7 0.0025 5.4E-08 58.6 5.2 45 185-231 2-49 (321)
44 PRK10187 trehalose-6-phosphate 96.7 0.0026 5.7E-08 57.1 5.2 46 183-228 14-63 (266)
45 TIGR00685 T6PP trehalose-phosp 96.7 0.0027 5.8E-08 55.6 5.1 44 184-227 4-51 (244)
46 TIGR00099 Cof-subfamily Cof su 96.7 0.0036 7.7E-08 54.2 5.5 42 185-228 1-42 (256)
47 TIGR01261 hisB_Nterm histidino 96.6 0.0038 8.2E-08 52.6 5.3 46 184-230 2-57 (161)
48 PRK14501 putative bifunctional 96.5 0.013 2.8E-07 59.5 9.2 50 179-228 488-541 (726)
49 TIGR01482 SPP-subfamily Sucros 96.5 0.0038 8.1E-08 52.4 4.3 39 186-226 1-39 (225)
50 smart00775 LNS2 LNS2 domain. T 96.4 0.0049 1.1E-07 51.7 4.8 43 185-228 1-53 (157)
51 TIGR02461 osmo_MPG_phos mannos 96.2 0.0079 1.7E-07 52.7 5.2 41 185-228 1-41 (225)
52 COG0241 HisB Histidinol phosph 96.2 0.013 2.7E-07 51.7 6.3 67 183-251 5-83 (181)
53 PRK05446 imidazole glycerol-ph 96.1 0.0076 1.6E-07 57.5 5.0 45 183-228 2-56 (354)
54 TIGR01663 PNK-3'Pase polynucle 96.1 0.0085 1.8E-07 60.0 5.3 48 183-231 168-226 (526)
55 PLN02887 hydrolase family prot 96.0 0.012 2.5E-07 59.5 6.0 49 178-228 303-351 (580)
56 TIGR01672 AphA HAD superfamily 96.0 0.017 3.7E-07 52.1 6.2 30 168-197 44-77 (237)
57 PRK12702 mannosyl-3-phosphogly 95.7 0.018 3.9E-07 54.6 5.4 43 183-227 1-43 (302)
58 PHA02530 pseT polynucleotide k 95.7 0.078 1.7E-06 47.0 8.9 60 182-247 157-227 (300)
59 PRK10725 fructose-1-P/6-phosph 95.6 0.014 3.1E-07 47.6 3.8 35 181-220 3-37 (188)
60 PLN02205 alpha,alpha-trehalose 95.6 0.023 4.9E-07 59.8 6.2 59 169-227 578-642 (854)
61 PLN02423 phosphomannomutase 95.5 0.023 5E-07 50.4 5.0 45 180-227 3-48 (245)
62 TIGR01486 HAD-SF-IIB-MPGP mann 95.3 0.033 7.2E-07 48.6 5.3 40 186-227 2-41 (256)
63 PLN03243 haloacid dehalogenase 95.2 0.019 4.2E-07 51.6 3.8 36 180-220 21-57 (260)
64 PRK14502 bifunctional mannosyl 95.2 0.15 3.2E-06 53.2 10.3 114 113-228 310-459 (694)
65 PRK11587 putative phosphatase; 95.2 0.023 5E-07 48.3 3.8 34 182-220 2-35 (218)
66 TIGR02253 CTE7 HAD superfamily 95.1 0.028 6.1E-07 47.0 4.1 15 183-197 2-16 (221)
67 COG0637 Predicted phosphatase/ 95.1 0.024 5.2E-07 49.4 3.7 34 183-221 2-35 (221)
68 TIGR01485 SPP_plant-cyano sucr 95.0 0.022 4.7E-07 49.7 3.3 40 185-225 3-44 (249)
69 TIGR02009 PGMB-YQAB-SF beta-ph 94.9 0.032 7E-07 45.1 3.9 33 183-220 1-33 (185)
70 TIGR03351 PhnX-like phosphonat 94.8 0.033 7.1E-07 46.8 3.8 33 183-220 1-33 (220)
71 PRK10563 6-phosphogluconate ph 94.8 0.037 8.1E-07 46.7 4.0 34 182-220 3-36 (221)
72 TIGR02254 YjjG/YfnB HAD superf 94.7 0.035 7.5E-07 46.1 3.7 33 183-220 1-33 (224)
73 PLN03063 alpha,alpha-trehalose 94.7 0.059 1.3E-06 56.1 6.0 57 170-226 490-557 (797)
74 COG3769 Predicted hydrolase (H 94.6 0.049 1.1E-06 50.9 4.5 44 181-227 5-48 (274)
75 TIGR01685 MDP-1 magnesium-depe 94.5 0.059 1.3E-06 46.6 4.7 40 182-227 31-70 (174)
76 TIGR02252 DREG-2 REG-2-like, H 94.5 0.033 7.1E-07 46.3 3.0 32 184-220 1-32 (203)
77 PRK13288 pyrophosphatase PpaX; 94.5 0.042 9.1E-07 46.3 3.6 33 182-219 2-34 (214)
78 PRK13226 phosphoglycolate phos 94.2 0.052 1.1E-06 46.9 3.6 33 183-220 12-44 (229)
79 PLN03017 trehalose-phosphatase 94.2 0.1 2.2E-06 50.5 5.9 43 182-226 110-156 (366)
80 PLN02151 trehalose-phosphatase 94.2 0.078 1.7E-06 51.1 5.1 43 182-226 97-143 (354)
81 PHA02597 30.2 hypothetical pro 94.1 0.034 7.4E-07 46.2 2.3 16 183-198 2-17 (197)
82 PRK13478 phosphonoacetaldehyde 94.0 0.057 1.2E-06 47.5 3.7 34 183-220 4-37 (267)
83 PRK09449 dUMP phosphatase; Pro 94.0 0.05 1.1E-06 45.8 3.2 32 182-220 2-33 (224)
84 PF03031 NIF: NLI interacting 94.0 0.058 1.3E-06 43.7 3.4 43 184-228 1-61 (159)
85 TIGR01422 phosphonatase phosph 94.0 0.063 1.4E-06 46.6 3.8 34 183-220 2-35 (253)
86 PRK10826 2-deoxyglucose-6-phos 93.9 0.063 1.4E-06 45.6 3.6 35 181-220 5-39 (222)
87 PRK13222 phosphoglycolate phos 93.9 0.063 1.4E-06 44.8 3.4 35 181-220 4-38 (226)
88 TIGR02726 phenyl_P_delta pheny 93.8 0.067 1.5E-06 45.8 3.6 47 182-229 6-61 (169)
89 smart00577 CPDc catalytic doma 93.7 0.11 2.3E-06 42.5 4.5 45 183-229 2-71 (148)
90 PLN02770 haloacid dehalogenase 93.7 0.067 1.5E-06 46.9 3.5 33 182-219 21-53 (248)
91 PRK11009 aphA acid phosphatase 93.7 0.17 3.7E-06 45.8 6.2 61 168-229 44-141 (237)
92 PLN02580 trehalose-phosphatase 93.4 0.15 3.2E-06 49.6 5.6 48 177-226 113-164 (384)
93 PRK13223 phosphoglycolate phos 93.4 0.073 1.6E-06 47.7 3.3 33 183-220 13-45 (272)
94 PLN02575 haloacid dehalogenase 93.4 0.14 3E-06 49.7 5.3 60 156-220 101-164 (381)
95 PLN03064 alpha,alpha-trehalose 93.3 0.16 3.4E-06 54.5 6.1 57 172-228 576-649 (934)
96 PRK13582 thrH phosphoserine ph 93.3 0.078 1.7E-06 44.0 3.1 13 183-195 1-13 (205)
97 PLN02940 riboflavin kinase 93.2 0.071 1.5E-06 50.6 3.1 33 183-220 11-43 (382)
98 COG0546 Gph Predicted phosphat 93.2 0.11 2.3E-06 44.9 3.9 34 182-220 3-36 (220)
99 TIGR01680 Veg_Stor_Prot vegeta 93.0 0.15 3.2E-06 47.9 4.7 59 182-246 100-184 (275)
100 TIGR01675 plant-AP plant acid 93.0 0.19 4.1E-06 45.7 5.3 63 179-247 73-160 (229)
101 PF02358 Trehalose_PPase: Treh 92.9 0.1 2.3E-06 45.3 3.4 42 187-228 1-46 (235)
102 PRK13225 phosphoglycolate phos 92.8 0.11 2.4E-06 47.2 3.5 36 180-220 59-94 (273)
103 PF12689 Acid_PPase: Acid Phos 92.7 0.24 5.3E-06 43.0 5.4 44 184-228 4-72 (169)
104 PRK10748 flavin mononucleotide 92.6 0.11 2.3E-06 45.3 3.1 16 182-197 9-24 (238)
105 TIGR02247 HAD-1A3-hyp Epoxide 92.3 0.082 1.8E-06 44.3 2.0 15 183-197 2-16 (211)
106 TIGR01548 HAD-SF-IA-hyp1 haloa 92.2 0.12 2.6E-06 43.2 2.7 30 185-219 2-31 (197)
107 PLN02779 haloacid dehalogenase 92.2 0.14 3.1E-06 46.4 3.4 33 183-219 40-72 (286)
108 TIGR01990 bPGM beta-phosphoglu 92.1 0.16 3.4E-06 41.1 3.3 31 185-220 1-31 (185)
109 TIGR00338 serB phosphoserine p 92.1 0.18 4E-06 42.3 3.8 16 181-196 12-27 (219)
110 PRK14988 GMP/IMP nucleotidase; 91.5 0.1 2.2E-06 45.3 1.6 20 172-196 4-23 (224)
111 TIGR01533 lipo_e_P4 5'-nucleot 91.5 0.23 5E-06 45.8 4.0 73 133-229 48-145 (266)
112 TIGR01549 HAD-SF-IA-v1 haloaci 91.2 0.17 3.6E-06 40.1 2.5 30 185-219 1-30 (154)
113 PLN02954 phosphoserine phospha 91.0 0.24 5.1E-06 41.8 3.4 16 181-196 10-25 (224)
114 TIGR02250 FCP1_euk FCP1-like p 91.0 0.35 7.5E-06 40.8 4.3 50 179-230 2-85 (156)
115 TIGR02251 HIF-SF_euk Dullard-l 90.9 0.51 1.1E-05 39.6 5.2 44 184-229 2-68 (162)
116 PRK11590 hypothetical protein; 90.8 0.23 4.9E-06 42.6 3.1 13 183-195 6-18 (211)
117 COG1877 OtsB Trehalose-6-phosp 90.8 0.42 9.1E-06 44.4 5.0 49 178-226 13-65 (266)
118 PF00702 Hydrolase: haloacid d 90.7 0.13 2.8E-06 42.0 1.4 19 183-202 1-19 (215)
119 PF08235 LNS2: LNS2 (Lipin/Ned 90.0 0.37 8.1E-06 41.7 3.8 43 185-228 1-53 (157)
120 TIGR01491 HAD-SF-IB-PSPlk HAD- 90.0 0.28 6E-06 40.1 2.8 15 182-196 3-17 (201)
121 TIGR01428 HAD_type_II 2-haloal 90.0 0.15 3.3E-06 42.2 1.3 16 183-198 1-16 (198)
122 TIGR02471 sucr_syn_bact_C sucr 89.2 0.22 4.7E-06 42.9 1.7 37 185-225 1-37 (236)
123 TIGR01449 PGP_bact 2-phosphogl 89.1 0.33 7.1E-06 40.3 2.7 30 186-220 1-30 (213)
124 TIGR01993 Pyr-5-nucltdase pyri 89.0 0.46 1E-05 39.0 3.5 12 185-196 2-13 (184)
125 PF05152 DUF705: Protein of un 88.7 0.76 1.6E-05 43.9 5.1 92 132-225 67-165 (297)
126 KOG3189 Phosphomannomutase [Li 88.4 0.89 1.9E-05 42.2 5.1 38 178-216 6-43 (252)
127 KOG3109 Haloacid dehalogenase- 88.1 0.44 9.5E-06 44.3 3.0 38 181-219 13-51 (244)
128 TIGR02245 HAD_IIID1 HAD-superf 88.1 0.61 1.3E-05 41.3 3.8 47 180-228 18-70 (195)
129 PF03767 Acid_phosphat_B: HAD 87.7 0.46 1E-05 42.3 2.8 61 181-247 70-155 (229)
130 KOG2882 p-Nitrophenyl phosphat 87.5 1 2.2E-05 43.2 5.1 49 181-232 20-68 (306)
131 COG1011 Predicted hydrolase (H 86.4 0.38 8.3E-06 40.1 1.5 18 182-199 3-20 (229)
132 TIGR01493 HAD-SF-IA-v2 Haloaci 86.2 0.5 1.1E-05 38.2 2.1 14 185-198 1-14 (175)
133 PLN02382 probable sucrose-phos 86.2 0.84 1.8E-05 44.1 3.9 40 184-224 10-51 (413)
134 PRK06698 bifunctional 5'-methy 86.0 0.53 1.2E-05 45.2 2.4 30 183-217 241-270 (459)
135 PLN02919 haloacid dehalogenase 85.2 0.79 1.7E-05 49.4 3.5 33 183-220 75-107 (1057)
136 PF05116 S6PP: Sucrose-6F-phos 84.6 0.32 7E-06 43.3 0.2 27 184-211 3-29 (247)
137 TIGR01489 DKMTPPase-SF 2,3-dik 84.3 0.63 1.4E-05 37.5 1.8 16 185-200 3-18 (188)
138 PRK11133 serB phosphoserine ph 83.6 0.93 2E-05 42.6 2.9 18 178-195 105-122 (322)
139 TIGR01509 HAD-SF-IA-v3 haloaci 83.5 0.46 1E-05 38.0 0.7 13 185-197 1-13 (183)
140 TIGR01454 AHBA_synth_RP 3-amin 83.4 0.96 2.1E-05 37.8 2.6 26 186-216 1-26 (205)
141 PF13419 HAD_2: Haloacid dehal 82.2 0.69 1.5E-05 35.8 1.2 30 186-220 1-31 (176)
142 PF11019 DUF2608: Protein of u 78.7 4.6 0.0001 36.7 5.5 43 166-209 3-46 (252)
143 KOG3040 Predicted sugar phosph 77.7 3.6 7.8E-05 38.6 4.5 48 181-231 5-52 (262)
144 PRK09456 ?-D-glucose-1-phospha 76.7 1.5 3.3E-05 36.7 1.7 14 184-197 1-14 (199)
145 TIGR01511 ATPase-IB1_Cu copper 75.7 4 8.6E-05 40.8 4.5 50 178-228 380-431 (562)
146 COG0560 SerB Phosphoserine pho 75.4 2.6 5.7E-05 37.2 2.9 56 181-247 3-60 (212)
147 PRK09552 mtnX 2-hydroxy-3-keto 73.9 1.9 4.1E-05 36.9 1.6 14 184-197 4-17 (219)
148 PF12710 HAD: haloacid dehalog 73.3 1.9 4E-05 34.9 1.3 13 186-198 1-13 (192)
149 TIGR01490 HAD-SF-IB-hyp1 HAD-s 71.7 2.1 4.5E-05 35.4 1.3 14 186-199 2-15 (202)
150 TIGR02137 HSK-PSP phosphoserin 70.3 3 6.5E-05 36.3 2.0 25 184-219 2-26 (203)
151 KOG1605 TFIIF-interacting CTD 70.1 2.9 6.3E-05 39.0 2.0 31 168-199 74-104 (262)
152 COG3882 FkbH Predicted enzyme 68.7 8.1 0.00018 39.8 4.9 49 179-228 218-281 (574)
153 TIGR01545 YfhB_g-proteo haloac 68.0 3.3 7.2E-05 36.1 1.8 16 182-197 4-19 (210)
154 TIGR01488 HAD-SF-IB Haloacid D 67.4 2.7 6E-05 33.7 1.1 14 186-199 2-15 (177)
155 KOG1618 Predicted phosphatase 61.8 13 0.00028 36.7 4.7 48 184-233 36-86 (389)
156 cd08506 PBP2_clavulanate_OppA2 61.4 33 0.00072 32.2 7.2 87 132-223 250-351 (466)
157 KOG2134 Polynucleotide kinase 60.0 9 0.0002 38.3 3.3 54 180-234 72-136 (422)
158 PRK13111 trpA tryptophan synth 59.6 77 0.0017 29.2 9.1 82 135-228 64-153 (258)
159 TIGR03333 salvage_mtnX 2-hydro 57.1 5.4 0.00012 34.1 1.1 13 186-198 2-14 (214)
160 PRK14129 heat shock protein Hs 56.5 5.3 0.00011 33.2 0.9 17 179-195 15-31 (105)
161 cd08503 PBP2_NikA_DppA_OppA_li 55.4 56 0.0012 30.7 7.6 89 132-224 258-356 (460)
162 smart00195 DSPc Dual specifici 54.9 10 0.00022 29.8 2.3 30 158-187 1-31 (138)
163 PF13419 HAD_2: Haloacid dehal 54.6 15 0.00033 28.3 3.2 30 198-228 74-103 (176)
164 cd08497 PBP2_NikA_DppA_OppA_li 54.5 46 0.00099 31.9 7.0 83 132-224 289-380 (491)
165 TIGR02247 HAD-1A3-hyp Epoxide 54.2 18 0.00039 30.2 3.8 29 201-230 94-122 (211)
166 cd02922 FCB2_FMN Flavocytochro 53.6 71 0.0015 30.6 8.1 22 216-237 232-253 (344)
167 TIGR01509 HAD-SF-IA-v3 haloaci 53.3 18 0.0004 28.8 3.5 29 200-229 84-112 (183)
168 KOG3085 Predicted hydrolase (H 51.9 14 0.0003 34.2 2.9 35 181-220 5-39 (237)
169 COG1778 Low specificity phosph 51.1 8.1 0.00018 34.5 1.3 48 179-227 4-60 (170)
170 TIGR02253 CTE7 HAD superfamily 50.0 21 0.00045 29.9 3.5 28 201-229 94-121 (221)
171 cd08512 PBP2_NikA_DppA_OppA_li 49.9 84 0.0018 29.6 7.8 89 132-224 269-368 (476)
172 cd08513 PBP2_thermophilic_Hb8_ 49.5 74 0.0016 30.0 7.4 94 132-225 260-372 (482)
173 TIGR01428 HAD_type_II 2-haloal 49.0 23 0.00049 29.3 3.6 28 200-228 91-118 (198)
174 PRK09456 ?-D-glucose-1-phospha 48.3 24 0.00052 29.6 3.7 26 202-228 85-110 (199)
175 cd08489 PBP2_NikA The substrat 47.5 89 0.0019 29.6 7.7 94 131-224 256-368 (488)
176 cd08502 PBP2_NikA_DppA_OppA_li 47.5 88 0.0019 29.7 7.7 89 132-224 264-366 (472)
177 PF00070 Pyr_redox: Pyridine n 47.0 66 0.0014 23.3 5.4 43 176-222 16-58 (80)
178 cd02037 MRP-like MRP (Multiple 46.9 54 0.0012 26.8 5.4 54 177-231 23-80 (169)
179 cd08510 PBP2_Lactococcal_OppA_ 46.8 1.2E+02 0.0025 29.3 8.4 92 132-223 293-405 (516)
180 cd08507 PBP2_SgrR_like The C-t 45.3 39 0.00084 32.0 4.9 83 133-224 245-331 (448)
181 TIGR01525 ATPase-IB_hvy heavy 45.2 27 0.00059 34.7 4.1 52 176-228 357-411 (556)
182 TIGR01491 HAD-SF-IB-PSPlk HAD- 44.8 29 0.00062 28.3 3.5 26 202-228 81-106 (201)
183 COG4850 Uncharacterized conser 44.3 34 0.00075 33.8 4.5 48 180-228 159-223 (373)
184 PRK08238 hypothetical protein; 44.1 71 0.0015 32.0 6.7 81 121-228 18-98 (479)
185 KOG2914 Predicted haloacid-hal 44.0 23 0.00051 32.2 3.1 35 180-219 7-41 (222)
186 COG0731 Fe-S oxidoreductases [ 43.4 29 0.00062 33.2 3.7 36 193-229 84-120 (296)
187 cd08516 PBP2_NikA_DppA_OppA_li 42.7 1.4E+02 0.0029 27.9 8.0 89 132-224 251-352 (457)
188 KOG2116 Protein involved in pl 42.7 20 0.00044 38.1 2.8 49 179-228 526-584 (738)
189 PF14488 DUF4434: Domain of un 42.6 64 0.0014 27.7 5.4 52 175-226 26-86 (166)
190 PLN02591 tryptophan synthase 42.2 1.6E+02 0.0036 27.1 8.3 81 135-228 54-142 (250)
191 cd05014 SIS_Kpsf KpsF-like pro 42.1 85 0.0018 24.1 5.6 42 189-231 46-87 (128)
192 PF06888 Put_Phosphatase: Puta 41.9 13 0.00029 33.9 1.2 16 185-200 2-17 (234)
193 cd01147 HemV-2 Metal binding p 41.5 65 0.0014 27.5 5.3 45 139-194 62-110 (262)
194 cd06525 GH25_Lyc-like Lyc mura 41.5 80 0.0017 26.7 5.8 48 172-225 11-60 (184)
195 PF14258 DUF4350: Domain of un 41.3 78 0.0017 22.6 4.9 64 145-225 5-70 (70)
196 PF02310 B12-binding: B12 bind 41.1 72 0.0016 24.3 5.0 38 176-226 22-59 (121)
197 COG3785 Uncharacterized conser 40.9 14 0.00031 31.1 1.1 14 180-193 25-38 (116)
198 cd08494 PBP2_NikA_DppA_OppA_li 40.2 1.7E+02 0.0036 27.2 8.1 88 132-224 251-349 (448)
199 cd08508 PBP2_NikA_DppA_OppA_li 40.2 1.4E+02 0.003 28.4 7.7 89 132-225 261-360 (470)
200 TIGR00338 serB phosphoserine p 40.0 34 0.00074 28.7 3.3 27 201-228 85-111 (219)
201 PF12697 Abhydrolase_6: Alpha/ 39.7 52 0.0011 25.4 4.1 54 176-230 19-77 (228)
202 cd06419 GH25_muramidase_2 Unch 39.5 87 0.0019 27.4 5.9 46 172-223 19-64 (190)
203 TIGR01454 AHBA_synth_RP 3-amin 38.8 37 0.00081 28.3 3.4 28 200-228 74-101 (205)
204 cd08492 PBP2_NikA_DppA_OppA_li 38.5 1.7E+02 0.0037 27.6 8.0 93 132-224 267-378 (484)
205 PF06941 NT5C: 5' nucleotidase 38.4 40 0.00087 28.4 3.5 11 186-196 5-15 (191)
206 cd08500 PBP2_NikA_DppA_OppA_li 38.0 1.8E+02 0.0038 28.1 8.2 93 132-224 264-378 (499)
207 cd00127 DSPc Dual specificity 37.9 28 0.00062 26.9 2.4 29 159-187 3-32 (139)
208 cd06413 GH25_muramidase_1 Unch 37.3 1E+02 0.0022 26.3 5.9 47 172-224 14-60 (191)
209 TIGR02252 DREG-2 REG-2-like, H 37.2 39 0.00085 28.0 3.3 27 201-228 105-131 (203)
210 cd08496 PBP2_NikA_DppA_OppA_li 36.6 1.6E+02 0.0034 27.7 7.5 87 132-224 250-348 (454)
211 KOG1050 Trehalose-6-phosphate 36.5 29 0.00063 36.9 2.8 66 176-245 496-561 (732)
212 PLN02965 Probable pheophorbida 36.4 1.3E+02 0.0029 25.6 6.4 55 175-229 23-82 (255)
213 PRK11587 putative phosphatase; 36.2 43 0.00094 28.4 3.4 27 201-228 83-109 (218)
214 PF08814 XisH: XisH protein; 35.9 18 0.0004 31.1 1.1 56 132-192 69-130 (135)
215 cd02036 MinD Bacterial cell di 35.8 26 0.00057 28.0 1.9 16 177-192 23-38 (179)
216 PRK10671 copA copper exporting 35.7 64 0.0014 33.9 5.1 52 176-228 623-676 (834)
217 cd08499 PBP2_Ylib_like The sub 35.6 1.8E+02 0.0038 27.5 7.7 88 132-224 254-352 (474)
218 PRK13886 conjugal transfer pro 35.4 70 0.0015 29.5 4.8 15 177-191 26-40 (241)
219 PRK10826 2-deoxyglucose-6-phos 34.9 50 0.0011 28.0 3.6 28 200-228 91-118 (222)
220 cd01143 YvrC Periplasmic bindi 34.9 80 0.0017 25.6 4.6 42 141-193 50-93 (195)
221 TIGR01449 PGP_bact 2-phosphogl 34.8 51 0.0011 27.2 3.6 27 201-228 85-111 (213)
222 PTZ00079 NADP-specific glutama 34.6 64 0.0014 32.6 4.8 41 174-216 252-293 (454)
223 cd05313 NAD_bind_2_Glu_DH NAD( 34.5 1.2E+02 0.0025 28.3 6.1 40 175-216 54-94 (254)
224 cd08518 PBP2_NikA_DppA_OppA_li 34.4 1.9E+02 0.0041 27.4 7.6 92 132-224 251-360 (464)
225 COG3977 Alanine-alpha-ketoisov 33.8 63 0.0014 32.2 4.4 71 171-244 167-238 (417)
226 PRK10985 putative hydrolase; P 33.6 1.4E+02 0.003 27.1 6.4 55 176-230 81-142 (324)
227 TIGR01990 bPGM beta-phosphoglu 33.5 55 0.0012 26.3 3.5 27 201-228 87-113 (185)
228 TIGR01545 YfhB_g-proteo haloac 33.5 50 0.0011 28.8 3.4 28 201-228 94-121 (210)
229 cd08514 PBP2_AppA_like The sub 33.4 2.6E+02 0.0057 26.3 8.4 93 132-224 262-373 (483)
230 cd05005 SIS_PHI Hexulose-6-pho 33.2 1.4E+02 0.003 24.9 5.9 40 191-231 76-115 (179)
231 TIGR01490 HAD-SF-IB-hyp1 HAD-s 32.9 56 0.0012 26.9 3.5 24 203-227 89-112 (202)
232 TIGR03351 PhnX-like phosphonat 32.8 61 0.0013 27.2 3.7 28 201-229 87-114 (220)
233 PRK08238 hypothetical protein; 32.5 28 0.0006 34.8 1.9 20 184-205 11-30 (479)
234 TIGR01691 enolase-ppase 2,3-di 32.3 55 0.0012 29.2 3.6 27 201-228 95-121 (220)
235 COG5083 SMP2 Uncharacterized p 32.1 24 0.00051 36.4 1.3 19 179-197 371-389 (580)
236 cd08490 PBP2_NikA_DppA_OppA_li 32.0 2.2E+02 0.0048 26.6 7.6 92 132-224 246-355 (470)
237 TIGR02009 PGMB-YQAB-SF beta-ph 31.9 68 0.0015 25.8 3.8 26 201-227 88-113 (185)
238 COG1255 Uncharacterized protei 31.9 1.3E+02 0.0028 26.0 5.5 45 181-225 51-102 (129)
239 cd01139 TroA_f Periplasmic bin 31.8 1.1E+02 0.0024 27.7 5.4 41 141-192 81-128 (342)
240 TIGR01281 DPOR_bchL light-inde 31.6 32 0.00069 30.2 1.9 16 177-192 23-38 (268)
241 PRK13230 nitrogenase reductase 31.6 30 0.00065 30.8 1.8 16 176-191 23-38 (279)
242 PF04273 DUF442: Putative phos 31.6 70 0.0015 25.9 3.8 28 162-189 6-34 (110)
243 PF06437 ISN1: IMP-specific 5' 31.3 1E+02 0.0022 31.1 5.4 47 181-228 145-192 (408)
244 PLN02177 glycerol-3-phosphate 31.3 29 0.00064 34.9 1.9 27 167-196 9-35 (497)
245 PRK13222 phosphoglycolate phos 31.3 68 0.0015 26.7 3.8 28 200-228 92-119 (226)
246 PRK09552 mtnX 2-hydroxy-3-keto 31.1 59 0.0013 27.8 3.4 27 201-228 74-100 (219)
247 PF01704 UDPGP: UTP--glucose-1 30.8 44 0.00095 33.0 2.9 42 175-221 184-226 (420)
248 cd01125 repA Hexameric Replica 30.6 87 0.0019 27.3 4.5 50 178-230 107-161 (239)
249 cd06522 GH25_AtlA-like AtlA is 30.6 1.2E+02 0.0026 26.0 5.3 51 170-226 13-65 (192)
250 COG0678 AHP1 Peroxiredoxin [Po 30.4 1.2E+02 0.0026 27.2 5.2 50 177-227 32-82 (165)
251 TIGR01489 DKMTPPase-SF 2,3-dik 30.3 69 0.0015 25.7 3.5 26 202-228 73-98 (188)
252 PRK13209 L-xylulose 5-phosphat 30.1 1.5E+02 0.0032 26.1 5.9 50 176-225 28-77 (283)
253 PF02449 Glyco_hydro_42: Beta- 29.7 49 0.0011 31.0 2.9 59 168-226 9-68 (374)
254 PHA02518 ParA-like protein; Pr 29.6 38 0.00082 28.0 2.0 21 177-197 24-46 (211)
255 TIGR02097 yccV hemimethylated 29.6 26 0.00057 28.5 1.0 43 179-230 13-61 (101)
256 PF07213 DAP10: DAP10 membrane 29.6 26 0.00057 27.8 1.0 19 5-23 15-33 (79)
257 TIGR01370 cysRS possible cyste 29.4 1.2E+02 0.0026 29.1 5.5 66 162-228 132-214 (315)
258 PRK11590 hypothetical protein; 29.0 71 0.0015 27.3 3.6 27 202-228 96-122 (211)
259 PRK10671 copA copper exporting 28.9 45 0.00097 35.0 2.7 26 175-201 508-534 (834)
260 PF05157 T2SE_Nter: Type II se 28.8 73 0.0016 23.6 3.2 54 170-224 37-90 (109)
261 PRK10037 cell division protein 28.4 39 0.00085 29.6 1.9 17 177-193 25-41 (250)
262 COG3858 Predicted glycosyl hyd 28.3 31 0.00066 34.7 1.4 73 151-231 182-256 (423)
263 PF03129 HGTP_anticodon: Antic 28.2 1.2E+02 0.0027 22.2 4.3 20 176-195 23-42 (94)
264 cd08509 PBP2_TmCBP_oligosaccha 28.2 2.5E+02 0.0055 27.0 7.5 94 131-224 264-386 (509)
265 cd02032 Bchl_like This family 27.9 41 0.00089 29.6 2.0 15 177-191 23-37 (267)
266 PRK13235 nifH nitrogenase redu 27.8 40 0.00087 29.9 1.9 17 177-193 24-40 (274)
267 PRK13232 nifH nitrogenase redu 27.4 40 0.00087 29.9 1.8 17 177-193 24-40 (273)
268 cd05013 SIS_RpiR RpiR-like pro 27.4 2.2E+02 0.0048 21.4 5.7 27 203-230 73-99 (139)
269 PLN02954 phosphoserine phospha 27.3 82 0.0018 26.5 3.6 26 202-228 85-110 (224)
270 cd06412 GH25_CH-type CH-type ( 27.2 1.7E+02 0.0038 25.1 5.7 49 172-226 12-62 (199)
271 KOG1200 Mitochondrial/plastidi 27.0 1.3E+02 0.0029 28.3 5.2 58 176-234 32-104 (256)
272 PF01497 Peripla_BP_2: Peripla 27.0 1.2E+02 0.0027 25.2 4.6 43 140-193 49-94 (238)
273 cd01148 TroA_a Metal binding p 26.9 1.4E+02 0.003 26.2 5.1 37 142-189 70-113 (284)
274 PLN02535 glycolate oxidase 26.9 2.3E+02 0.0051 27.7 7.0 30 216-245 242-271 (364)
275 cd02040 NifH NifH gene encodes 26.8 45 0.00098 28.9 2.0 16 176-191 23-38 (270)
276 TIGR01549 HAD-SF-IA-v1 haloaci 26.8 74 0.0016 25.0 3.1 26 204-230 67-92 (154)
277 COG1856 Uncharacterized homolo 26.7 40 0.00087 32.0 1.8 66 156-222 84-153 (275)
278 PF05761 5_nucleotid: 5' nucle 26.7 42 0.00092 33.5 2.0 41 180-220 9-50 (448)
279 TIGR00542 hxl6Piso_put hexulos 26.6 1.7E+02 0.0037 25.9 5.7 50 176-225 23-72 (279)
280 PRK13288 pyrophosphatase PpaX; 26.6 84 0.0018 26.4 3.5 26 202-228 83-108 (214)
281 PLN02714 thiamin pyrophosphoki 26.5 65 0.0014 29.0 3.0 35 159-193 51-90 (229)
282 cd04737 LOX_like_FMN L-Lactate 26.4 4.4E+02 0.0095 25.6 8.7 29 215-243 239-267 (351)
283 cd00995 PBP2_NikA_DppA_OppA_li 26.4 3.6E+02 0.0077 24.9 7.8 90 132-225 255-358 (466)
284 TIGR01691 enolase-ppase 2,3-di 26.3 39 0.00086 30.1 1.6 33 183-215 1-35 (220)
285 cd04724 Tryptophan_synthase_al 26.2 3.7E+02 0.0079 24.1 7.7 52 135-188 52-110 (242)
286 PF13671 AAA_33: AAA domain; P 26.1 1.5E+02 0.0033 22.8 4.7 37 178-224 66-102 (143)
287 cd08511 PBP2_NikA_DppA_OppA_li 26.0 3.4E+02 0.0073 25.5 7.7 89 132-225 255-353 (467)
288 smart00518 AP2Ec AP endonuclea 26.0 2E+02 0.0044 25.1 6.0 10 178-187 54-63 (273)
289 cd06416 GH25_Lys1-like Lys-1 i 25.8 1.2E+02 0.0026 25.8 4.4 48 172-225 12-61 (196)
290 TIGR01287 nifH nitrogenase iro 25.7 47 0.001 29.3 2.0 15 177-191 23-37 (275)
291 TIGR01422 phosphonatase phosph 25.6 81 0.0017 27.4 3.3 25 203-228 101-125 (253)
292 PRK14988 GMP/IMP nucleotidase; 25.3 95 0.0021 27.0 3.7 28 200-228 92-119 (224)
293 TIGR02109 PQQ_syn_pqqE coenzym 25.3 1.5E+02 0.0033 27.4 5.2 30 198-228 62-91 (358)
294 KOG3120 Predicted haloacid deh 25.3 40 0.00086 31.9 1.5 19 183-201 13-31 (256)
295 PLN02811 hydrolase 25.2 96 0.0021 26.4 3.7 28 200-228 77-104 (220)
296 COG2503 Predicted secreted aci 25.2 91 0.002 29.9 3.8 54 183-237 79-156 (274)
297 PRK13185 chlL protochlorophyll 25.2 48 0.001 29.1 1.9 15 177-191 25-39 (270)
298 cd08493 PBP2_DppA_like The sub 25.0 2.9E+02 0.0064 26.1 7.2 90 132-225 270-374 (482)
299 PRK06079 enoyl-(acyl carrier p 24.9 1.3E+02 0.0028 25.9 4.5 27 204-231 68-94 (252)
300 cd08515 PBP2_NikA_DppA_OppA_li 24.8 3.3E+02 0.0071 25.7 7.4 91 131-225 257-360 (460)
301 cd08501 PBP2_Lpqw The substrat 24.8 1.7E+02 0.0038 27.6 5.7 94 132-225 266-381 (486)
302 PRK08303 short chain dehydroge 24.6 1.3E+02 0.0029 27.3 4.7 25 204-229 80-105 (305)
303 PLN02493 probable peroxisomal 24.5 4.2E+02 0.009 26.1 8.3 22 216-237 243-264 (367)
304 TIGR01969 minD_arch cell divis 24.4 53 0.0011 27.9 2.0 16 177-192 24-39 (251)
305 PRK13236 nitrogenase reductase 24.4 49 0.0011 30.3 1.9 18 176-193 28-45 (296)
306 cd08517 PBP2_NikA_DppA_OppA_li 24.3 3.4E+02 0.0073 25.5 7.4 90 132-224 263-368 (480)
307 PRK15413 glutathione ABC trans 24.2 2.5E+02 0.0055 27.1 6.7 88 132-223 283-380 (512)
308 PF13707 RloB: RloB-like prote 24.0 82 0.0018 26.1 3.0 48 182-248 61-108 (183)
309 COG0747 DdpA ABC-type dipeptid 24.0 6E+02 0.013 23.9 9.0 90 132-225 313-424 (556)
310 TIGR01488 HAD-SF-IB Haloacid D 23.9 97 0.0021 24.7 3.3 24 204-228 76-99 (177)
311 cd00897 UGPase_euk Eukaryotic 23.9 70 0.0015 30.3 2.8 43 174-221 128-171 (300)
312 PLN02211 methyl indole-3-aceta 23.9 2.4E+02 0.0053 25.0 6.1 55 176-230 39-98 (273)
313 PRK07533 enoyl-(acyl carrier p 23.9 1.5E+02 0.0033 25.6 4.7 26 204-230 73-98 (258)
314 PLN02511 hydrolase 23.7 1.9E+02 0.0041 27.4 5.7 55 176-230 123-184 (388)
315 TIGR03333 salvage_mtnX 2-hydro 23.7 92 0.002 26.6 3.3 10 218-227 86-95 (214)
316 cd02117 NifH_like This family 23.5 57 0.0012 27.8 2.0 15 177-191 23-37 (212)
317 cd04193 UDPGlcNAc_PPase UDPGlc 23.4 78 0.0017 30.0 3.1 35 174-212 148-183 (323)
318 PF01183 Glyco_hydro_25: Glyco 23.1 1.2E+02 0.0027 25.2 3.9 50 172-227 9-60 (181)
319 KOG0541 Alkyl hydroperoxide re 23.1 2.1E+02 0.0045 25.9 5.4 53 173-227 35-88 (171)
320 TIGR03371 cellulose_yhjQ cellu 23.1 58 0.0012 27.7 2.0 15 177-191 25-39 (246)
321 CHL00072 chlL photochlorophyll 23.1 54 0.0012 30.1 1.9 16 176-191 22-37 (290)
322 TIGR02244 HAD-IG-Ncltidse HAD 23.0 96 0.0021 30.0 3.6 25 203-228 186-210 (343)
323 PF09843 DUF2070: Predicted me 23.0 2.2E+02 0.0049 24.5 5.6 55 172-226 52-109 (179)
324 TIGR01512 ATPase-IB2_Cd heavy 23.0 84 0.0018 31.3 3.3 51 177-228 336-389 (536)
325 PLN02770 haloacid dehalogenase 22.9 1E+02 0.0022 27.1 3.5 27 201-228 108-134 (248)
326 TIGR02244 HAD-IG-Ncltidse HAD 22.8 49 0.0011 32.0 1.6 42 178-219 7-49 (343)
327 PLN02779 haloacid dehalogenase 22.7 1E+02 0.0023 28.0 3.6 27 201-228 144-170 (286)
328 cd00019 AP2Ec AP endonuclease 22.6 2.9E+02 0.0063 24.4 6.3 49 176-225 17-66 (279)
329 COG0446 HcaD Uncharacterized N 22.3 1.6E+02 0.0036 26.2 4.7 43 176-221 153-195 (415)
330 PRK00419 DNA primase small sub 22.1 94 0.002 30.6 3.4 65 164-229 69-150 (376)
331 TIGR01250 pro_imino_pep_2 prol 22.0 3.5E+02 0.0075 22.0 6.2 52 178-229 49-106 (288)
332 COG1467 PRI1 Eukaryotic-type D 21.9 1.5E+02 0.0032 28.9 4.6 46 184-230 94-153 (341)
333 COG3453 Uncharacterized protei 21.9 1.5E+02 0.0033 25.6 4.2 16 174-189 20-35 (130)
334 PRK06505 enoyl-(acyl carrier p 21.7 1.5E+02 0.0033 26.0 4.4 27 204-231 70-96 (271)
335 PF01656 CbiA: CobQ/CobB/MinD/ 21.7 61 0.0013 26.1 1.8 17 176-192 21-37 (195)
336 TIGR02708 L_lactate_ox L-lacta 21.6 4.8E+02 0.01 25.6 8.1 26 216-241 247-272 (367)
337 PF11871 DUF3391: Domain of un 21.6 63 0.0014 25.3 1.8 24 174-197 40-63 (128)
338 PRK13210 putative L-xylulose 5 21.4 2.9E+02 0.0062 24.1 6.0 49 176-224 23-71 (284)
339 PRK12677 xylose isomerase; Pro 21.3 2.3E+02 0.0049 27.6 5.8 51 176-227 38-90 (384)
340 cd08505 PBP2_NikA_DppA_OppA_li 21.2 3.5E+02 0.0077 26.6 7.2 91 132-223 306-413 (528)
341 PRK13226 phosphoglycolate phos 21.0 1E+02 0.0023 26.5 3.1 26 202-228 96-121 (229)
342 PF01494 FAD_binding_3: FAD bi 21.0 1E+02 0.0023 26.6 3.1 36 177-212 19-55 (356)
343 TIGR01838 PHA_synth_I poly(R)- 20.9 2.4E+02 0.0053 28.8 6.1 74 157-230 189-273 (532)
344 COG1011 Predicted hydrolase (H 20.8 1.2E+02 0.0026 25.2 3.4 27 200-228 98-124 (229)
345 PF05226 CHASE2: CHASE2 domain 20.7 2.2E+02 0.0048 25.6 5.3 44 177-224 72-115 (310)
346 PRK09449 dUMP phosphatase; Pro 20.6 1.1E+02 0.0024 25.6 3.2 25 202-228 96-120 (224)
347 cd01076 NAD_bind_1_Glu_DH NAD( 20.5 1.8E+02 0.0039 26.1 4.6 25 176-200 48-73 (227)
348 TIGR03695 menH_SHCHC 2-succiny 20.4 2.6E+02 0.0057 21.9 5.0 54 176-230 22-81 (251)
349 PRK01122 potassium-transportin 20.4 1.1E+02 0.0024 32.3 3.6 50 176-226 418-469 (679)
350 PRK11033 zntA zinc/cadmium/mer 20.3 1.1E+02 0.0025 31.9 3.7 52 176-228 541-594 (741)
351 PRK13234 nifH nitrogenase redu 20.2 68 0.0015 29.3 1.9 16 177-192 27-42 (295)
No 1
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.95 E-value=3.8e-28 Score=207.83 Aligned_cols=102 Identities=31% Similarity=0.476 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHhcCcccCCceecCCcccCChHH--HHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCC-c
Q 025153 144 VEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAE--LQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH-D 220 (257)
Q Consensus 144 ~~gI~~~~~~l~r~psLf~P~~yV~SI~dID~e~--Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGi-k 220 (257)
++|+++ +.+++++|++++||++|+||++||++. |++.|||+||||+||||++|++.+++|++.+||.+|++.||. +
T Consensus 1 ~~a~~~-~~~~~~~p~l~~P~l~V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~ 79 (168)
T PF09419_consen 1 LSATLA-VFRLLRNPSLLLPHLYVPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDR 79 (168)
T ss_pred CchhHH-HHHHHcCccccCCCEEcCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCe
Confidence 467776 666889999999999999999999999 999999999999999999999999999999999999998887 7
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHH
Q 025153 221 IAVFSNSAGNLGNCLFTAYLLIWLLL 246 (257)
Q Consensus 221 V~IVSNNaGs~dd~~~~~~~~iw~~~ 246 (257)
|+|||||+|+.||+++.+++.+-..|
T Consensus 80 v~IvSNsaGs~~d~~~~~a~~~~~~l 105 (168)
T PF09419_consen 80 VLIVSNSAGSSDDPDGERAEALEKAL 105 (168)
T ss_pred EEEEECCCCcccCccHHHHHHHHHhh
Confidence 99999999999999999988877654
No 2
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.88 E-value=6.7e-23 Score=177.58 Aligned_cols=97 Identities=58% Similarity=0.954 Sum_probs=91.5
Q ss_pred hhcchHHHHHHHHHHHhcCcccCCceecCCcccCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCC
Q 025153 140 QRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH 219 (257)
Q Consensus 140 Q~~N~~gI~~~~~~l~r~psLf~P~~yV~SI~dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGi 219 (257)
|+||++||+++++ ++++|+++.||..|+++++|||+-++..|||+||||+||||+.|++..++|.+...|++|+..||.
T Consensus 1 ~~iNIeGi~~~~~-~v~npr~~~Ph~~vptf~~ip~~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vyge 79 (190)
T KOG2961|consen 1 QRINIEGIVSSVS-VVVNPRFVLPHVSVPTFRYIPWEILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGE 79 (190)
T ss_pred CceehHHhhhhhe-eeeCcceeccccccCccccCCcchhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCc
Confidence 7899999999777 579999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -cEEEEeCCCCCCC-CCCch
Q 025153 220 -DIAVFSNSAGNLG-NCLFT 237 (257)
Q Consensus 220 -kV~IVSNNaGs~d-d~~~~ 237 (257)
.|+|+||++|+.. |.|..
T Consensus 80 k~i~v~SNsaG~~~~D~d~s 99 (190)
T KOG2961|consen 80 KDIAVFSNSAGLTEYDHDDS 99 (190)
T ss_pred ccEEEEecCcCccccCCchH
Confidence 5999999999954 88876
No 3
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.74 E-value=6.2e-19 Score=153.08 Aligned_cols=73 Identities=26% Similarity=0.246 Sum_probs=68.0
Q ss_pred CcccCCceecCCcccCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 158 RHLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 158 psLf~P~~yV~SI~dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
.+.++|+.+|++|++|+++.|+++|+|||++|+||||++|+..+.+||+++|+.++++ .|++++|||||..+.
T Consensus 3 ~k~~~Pd~~v~tv~~i~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~-~gi~v~vvSNn~e~R 75 (175)
T COG2179 3 IKFLQPDKLVETVFDITPDILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKE-AGIKVVVVSNNKESR 75 (175)
T ss_pred hhhhChhHHHhhHhhCCHHHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHh-cCCEEEEEeCCCHHH
Confidence 4678999999999999999999999999999999999999999999999998888876 799999999987543
No 4
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.25 E-value=1.8e-11 Score=101.95 Aligned_cols=70 Identities=37% Similarity=0.556 Sum_probs=64.5
Q ss_pred cccCCceecCCcccCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 159 HLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 159 sLf~P~~yV~SI~dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
++|.||++++++.+|+++.|++.|+++|++|+||||+++....+.|.+.+++.++++ .|++++|+||+.+
T Consensus 1 ~~~~~~~~~~~~~~i~~~~~~~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~-~g~~l~I~Sn~~~ 70 (170)
T TIGR01668 1 KFCLPHAIVKTLNDLTIDLLKKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKA-AGRKLLIVSNNAG 70 (170)
T ss_pred CCcCcccccCchhhCCHHHHHHCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHH-cCCEEEEEeCCch
Confidence 479999999999999999999999999999999999998888899999988888776 6899999999873
No 5
>PTZ00445 p36-lilke protein; Provisional
Probab=98.48 E-value=1.9e-07 Score=84.31 Aligned_cols=54 Identities=19% Similarity=0.043 Sum_probs=46.4
Q ss_pred hHHHHhcCccEEEEcCCCcccC-----CCCCC---------CChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 175 WAELQRRGFKGVVFDKDNTLTA-----PYSLT---------LWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 175 ~e~Lk~~GIKgVIfDlDNTLt~-----p~s~e---------i~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
.+.|++.|||+|++|+||||++ |.++. ++|++..|..++++ .|++|+||.=|..
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~-~~I~v~VVTfSd~ 102 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN-SNIKISVVTFSDK 102 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH-CCCeEEEEEccch
Confidence 4669999999999999999999 99988 89999986666655 8999999976654
No 6
>PRK06769 hypothetical protein; Validated
Probab=98.18 E-value=1.5e-06 Score=72.76 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=40.1
Q ss_pred cCccEEEEcCCCcccCC------CCCCCChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 181 RGFKGVVFDKDNTLTAP------YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p------~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
-|||+|++|.||||..| ....+-|.+.+.++++++ .|++++|+||+.+
T Consensus 2 ~~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~-~G~~l~I~Tn~~~ 55 (173)
T PRK06769 2 TNIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKA-NHIKIFSFTNQPG 55 (173)
T ss_pred CCCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHH-CCCEEEEEECCch
Confidence 48999999999999877 334467888888888776 5999999999875
No 7
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.98 E-value=6.3e-06 Score=64.52 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=40.0
Q ss_pred cEEEEcCCCcccC-------CCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCCC
Q 025153 184 KGVVFDKDNTLTA-------PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGN 233 (257)
Q Consensus 184 KgVIfDlDNTLt~-------p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd 233 (257)
|+|+||+||||+. +.+..+.|.+.+.+..+++ .|++++|+||+.+....
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~-~g~~l~i~Sn~~~~~~~ 56 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKE-AGYKVVIVTNQSGIGRG 56 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHH-CCCEEEEEECCcccccc
Confidence 7899999999993 4446778999988888775 69999999999866543
No 8
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.82 E-value=2.8e-05 Score=62.40 Aligned_cols=43 Identities=28% Similarity=0.241 Sum_probs=34.2
Q ss_pred cEEEEcCCCcccCCCC---CC--------CChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 184 KGVVFDKDNTLTAPYS---LT--------LWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s---~e--------i~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
|+|++|+||||..+.. .. +-|.+.+.+.++++ .|++++|+||+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~-~g~~l~i~Sn~ 54 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKK-NGFLLALASYN 54 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHH-CCeEEEEEeCC
Confidence 6899999999998732 21 46678887777765 69999999999
No 9
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.78 E-value=2.6e-05 Score=64.76 Aligned_cols=46 Identities=17% Similarity=0.394 Sum_probs=36.7
Q ss_pred cEEEEcCCCcccCCC-------CCCCChhHHHHHHHHHHhcCCcEEEEeCCCCC
Q 025153 184 KGVVFDKDNTLTAPY-------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGN 230 (257)
Q Consensus 184 KgVIfDlDNTLt~p~-------s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs 230 (257)
|+++||+||||+... +..+.|.+.+.+.++++ .|++++|+||+.+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~-~G~~l~i~TN~~~~ 54 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKK-MGYALVLVTNQSGI 54 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHH-CCCEEEEEeCCccc
Confidence 789999999999422 33356778888888776 69999999999863
No 10
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.73 E-value=4.9e-05 Score=55.99 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=36.0
Q ss_pred EEEEcCCCcccCCCCC-------CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 185 GVVFDKDNTLTAPYSL-------TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 185 gVIfDlDNTLt~p~s~-------ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+++||+||||+..... .+.+++.+.+.++++ .|.+++|+||+.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~i~ivS~~~ 50 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKE-KGIKLALATNKS 50 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHH-CCCeEEEEeCch
Confidence 4899999999966543 788889888888876 599999999987
No 11
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.70 E-value=5.9e-05 Score=63.47 Aligned_cols=48 Identities=27% Similarity=0.386 Sum_probs=38.3
Q ss_pred CccEEEEcCCCcccCCCCCC-----------CChhHHHHHHHHHHhcCCcEEEEeCCCCC
Q 025153 182 GFKGVVFDKDNTLTAPYSLT-----------LWGPLSSSIEQCKSVFGHDIAVFSNSAGN 230 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~e-----------i~Pel~~~w~e~k~~fGikV~IVSNNaGs 230 (257)
-.|.++||+||||+.+.+.. +.|.+.+.+.++++ .|++++|+||+.+.
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~-~G~~l~I~TN~~~~ 70 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDD-EGYKIVIFTNQSGI 70 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHH-CCCEEEEEeCCccc
Confidence 36899999999999866543 34778887888776 69999999998764
No 12
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.67 E-value=6.2e-05 Score=61.00 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=37.0
Q ss_pred cEEEEcCCCcccCCCC---------CCCChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 184 KGVVFDKDNTLTAPYS---------LTLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s---------~ei~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
++++||+||||+...+ ..+.|.+.+.+..+++ .|++++|+||+.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~-~g~~~~I~Sn~~~ 54 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRA-AGYTVVVVTNQSG 54 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHH-CCCEEEEEeCCCc
Confidence 5899999999998776 2357888887777776 6999999999874
No 13
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=97.55 E-value=0.00011 Score=64.85 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=37.7
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCC
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLG 232 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~d 232 (257)
||+++||+|+||.. ...+.|...+++.++++ .|.+++++|||++-+.
T Consensus 1 ~~~~~~D~DGtl~~--~~~~i~~a~~~l~~l~~-~g~~~~~~Tnn~~r~~ 47 (249)
T TIGR01457 1 YKGYLIDLDGTMYK--GKERIPEAETFVHELQK-RDIPYLFVTNNSTRTP 47 (249)
T ss_pred CCEEEEeCCCceEc--CCeeCcCHHHHHHHHHH-CCCeEEEEeCCCCCCH
Confidence 68999999999984 33445678888888776 6999999999886554
No 14
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.45 E-value=0.00045 Score=58.11 Aligned_cols=66 Identities=17% Similarity=0.036 Sum_probs=44.8
Q ss_pred cEEEEcCCCcccCCCCCC-----------CChhHHHHHHHHHHhcCCcEEEEeCCCCCCCCCCchhHHHHHHHHHHhh
Q 025153 184 KGVVFDKDNTLTAPYSLT-----------LWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGNCLFTAYLLIWLLLLFFS 250 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s~e-----------i~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd~~~~~~~~iw~~~~~~~ 250 (257)
|.+.||+||||+...+.. ..|.+.+.+.++.+ .|.+|+||||-.|.........+..++.-+..+.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~-~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il 77 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHK-KGYKIVIVTNQSGIGRGMGEKDLENFHEKIENIL 77 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHH-TTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHh-cCCeEEEEeCccccccccccchHHHHHHHHHHHH
Confidence 678999999998774422 24567888888765 6999999999999887544445666665554443
No 15
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.44 E-value=0.00014 Score=56.83 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=33.8
Q ss_pred EEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 186 VIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
++||+||||. ...++-|.+.+++..+++ .|.++++||||+..+
T Consensus 1 ~l~D~dGvl~--~g~~~ipga~e~l~~L~~-~g~~~~~lTNns~~s 43 (101)
T PF13344_consen 1 FLFDLDGVLY--NGNEPIPGAVEALDALRE-RGKPVVFLTNNSSRS 43 (101)
T ss_dssp EEEESTTTSE--ETTEE-TTHHHHHHHHHH-TTSEEEEEES-SSS-
T ss_pred CEEeCccEeE--eCCCcCcCHHHHHHHHHH-cCCCEEEEeCCCCCC
Confidence 6899999998 456677888888888776 599999999998655
No 16
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.40 E-value=0.00025 Score=63.02 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=38.9
Q ss_pred ccEEEEcCCCcccCCCC--CCCChhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 183 FKGVVFDKDNTLTAPYS--LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s--~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
+|+++||+||||..-+. ..+.|...+++.++++ .|++++++|||...+
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~-~G~~~~~~Tn~~~~~ 50 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRG-ASVKVRFVTNTTKES 50 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHH-CCCeEEEEECCCCCC
Confidence 58999999999984322 1278888888888776 699999999998765
No 17
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.39 E-value=0.00022 Score=63.63 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=36.1
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
|++++||+||||. +..++.|...+++.++++ .|++++++|||..
T Consensus 2 ~~~~~~D~DGtl~--~~~~~~~ga~e~l~~L~~-~g~~~~~~Tnns~ 45 (279)
T TIGR01452 2 AQGFIFDCDGVLW--LGERVVPGAPELLDRLAR-AGKAALFVTNNST 45 (279)
T ss_pred ccEEEEeCCCceE--cCCeeCcCHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 7899999999997 455566678887777775 6999999999863
No 18
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.36 E-value=0.00029 Score=64.36 Aligned_cols=45 Identities=31% Similarity=0.292 Sum_probs=35.6
Q ss_pred ccEEEEcCCCcccCCC--CC--------CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 183 FKGVVFDKDNTLTAPY--SL--------TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~--s~--------ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+|+||+|+||||...- +. .+.+.+.+.+.++++ .|+.++|+|||.
T Consensus 3 ~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~-~Gi~lai~S~n~ 57 (320)
T TIGR01686 3 LKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKK-QGFLLALASKND 57 (320)
T ss_pred eEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHh-CCCEEEEEcCCC
Confidence 7999999999998542 22 234678887888766 699999999997
No 19
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.34 E-value=0.00034 Score=58.95 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=34.6
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
||.|++|+||||... +..++|+..+.+.++++ .|++++|+|--
T Consensus 3 ~kli~~DlDGTLl~~-~~~i~~~~~~al~~l~~-~G~~~~iaTGR 45 (230)
T PRK01158 3 IKAIAIDIDGTITDK-DRRLSLKAVEAIRKAEK-LGIPVILATGN 45 (230)
T ss_pred eeEEEEecCCCcCCC-CCccCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 799999999999954 44688999988888775 68888877644
No 20
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.30 E-value=0.00048 Score=58.27 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=37.8
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
||.|++|+||||+. .+..++|+..+.+.++++ .|++++|+|...
T Consensus 1 ik~v~~DlDGTLl~-~~~~i~~~~~~~i~~l~~-~g~~~~~~TGR~ 44 (215)
T TIGR01487 1 IKLVAIDIDGTLTE-PNRMISERAIEAIRKAEK-KGIPVSLVTGNT 44 (215)
T ss_pred CcEEEEecCCCcCC-CCcccCHHHHHHHHHHHH-CCCEEEEEcCCc
Confidence 68999999999995 455799999998998876 699999999876
No 21
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.29 E-value=0.00024 Score=60.05 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=36.8
Q ss_pred CChHH-HHhcCccEEEEcCCCcccCCC------CCCCChhHH---HHHHHHHHhcCCcEEEEeCCC
Q 025153 173 IDWAE-LQRRGFKGVVFDKDNTLTAPY------SLTLWGPLS---SSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 173 ID~e~-Lk~~GIKgVIfDlDNTLt~p~------s~ei~Pel~---~~w~e~k~~fGikV~IVSNNa 228 (257)
++.+. -+..|||.|++|+||||+.+. ..++.+..+ ..+.++++ .|++++|+||..
T Consensus 10 ~~~~~~~~~~~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~-~Gi~v~I~T~~~ 74 (183)
T PRK09484 10 VSDDVMAKAENIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLT-SGIEVAIITGRK 74 (183)
T ss_pred hhHHHHHHhhCceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHH-CCCEEEEEeCCC
Confidence 44433 256799999999999999751 222222221 33556554 699999999985
No 22
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.26 E-value=0.00053 Score=57.10 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=35.8
Q ss_pred EEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 186 VIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
|++|+||||+++....++++..+++.++.+ -|+.++|+|...
T Consensus 2 i~~D~DgTL~~~~~~~~~~~~~~~l~~l~~-~g~~~~i~TGR~ 43 (204)
T TIGR01484 2 LFFDLDGTLLDPNAHELSPETIEALERLRE-AGVKVVLVTGRS 43 (204)
T ss_pred EEEeCcCCCcCCCCCcCCHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 789999999976546799999998888876 578999999876
No 23
>PRK10444 UMP phosphatase; Provisional
Probab=97.24 E-value=0.00048 Score=61.53 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=38.6
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
||+++||+||||.. ..++.|...+.+..+++ .|.+++++||+...+
T Consensus 1 ~~~v~~DlDGtL~~--~~~~~p~a~~~l~~L~~-~g~~~~~~Tn~~~~~ 46 (248)
T PRK10444 1 IKNVICDIDGVLMH--DNVAVPGAAEFLHRILD-KGLPLVLLTNYPSQT 46 (248)
T ss_pred CcEEEEeCCCceEe--CCeeCccHHHHHHHHHH-CCCeEEEEeCCCCCC
Confidence 78999999999984 34788888888877776 699999999999643
No 24
>PLN02645 phosphoglycolate phosphatase
Probab=97.20 E-value=0.00089 Score=61.09 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=38.7
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
.|++++||+||||.. ...+-|...+.+.++++ .|.+++++||+...+
T Consensus 27 ~~~~~~~D~DGtl~~--~~~~~~ga~e~l~~lr~-~g~~~~~~TN~~~~~ 73 (311)
T PLN02645 27 SVETFIFDCDGVIWK--GDKLIEGVPETLDMLRS-MGKKLVFVTNNSTKS 73 (311)
T ss_pred hCCEEEEeCcCCeEe--CCccCcCHHHHHHHHHH-CCCEEEEEeCCCCCC
Confidence 699999999999984 34566888888888776 699999999998544
No 25
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.17 E-value=0.00072 Score=59.74 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=37.2
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.||.|++|+||||+.. +..+.++..+.+.++++ .|++++|+|+..
T Consensus 3 ~~kli~~DlDGTLl~~-~~~~~~~~~~ai~~l~~-~Gi~~~iaTgR~ 47 (273)
T PRK00192 3 MKLLVFTDLDGTLLDH-HTYSYEPAKPALKALKE-KGIPVIPCTSKT 47 (273)
T ss_pred cceEEEEcCcccCcCC-CCcCcHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 4899999999999953 45677888888888765 799999999875
No 26
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.14 E-value=0.00068 Score=63.97 Aligned_cols=95 Identities=20% Similarity=0.127 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhcCccc--CCceecCCcccCC---hHHHHhcCccEEEEcCCCcccCCCCCCC---C
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKDRHLA--LPHVTVPDIRYID---WAELQRRGFKGVVFDKDNTLTAPYSLTL---W 203 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~psLf--~P~~yV~SI~dID---~e~Lk~~GIKgVIfDlDNTLt~p~s~ei---~ 203 (257)
.|+|..+-..+..+..+- +.++..+|.++ .=.++|-++.++. .+.+-=.-.++|+||+||||... +.++ +
T Consensus 71 ~~~R~~~k~~~k~~~lGh-~~vl~~~~~~y~~L~EW~v~~~~~v~~l~~~~~~~~~~kvIvFDLDgTLi~~-~~~v~ird 148 (301)
T TIGR01684 71 VDLRAHLKTAFKTSYFGH-TFVLFHKPAMYACLNEWYVFELEEIYNLNLPSKVFEPPHVVVFDLDSTLITD-EEPVRIRD 148 (301)
T ss_pred HHHHHHHHHHhcccccce-EEEecCCccHHHHHHHHHcccHhhhhhccccccccccceEEEEecCCCCcCC-CCccccCC
Confidence 456666666666655443 33333333321 3344554443332 23333344689999999999954 4444 6
Q ss_pred hhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 204 GPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 204 Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
|.+.+.+.++++ .|++++|+||+..
T Consensus 149 PgV~EaL~~Lke-kGikLaIaTS~~R 173 (301)
T TIGR01684 149 PRIYDSLTELKK-RGCILVLWSYGDR 173 (301)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCCH
Confidence 889888888877 6999999999863
No 27
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.14 E-value=0.00076 Score=58.11 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=35.1
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
.||.|++|+||||.. .+.+++|+..+.+.++++ .|+.++|.|=
T Consensus 2 ~~kli~~DlDGTLl~-~~~~i~~~~~~ai~~~~~-~G~~~~iaTG 44 (272)
T PRK10530 2 TYRVIALDLDGTLLT-PKKTILPESLEALARARE-AGYKVIIVTG 44 (272)
T ss_pred CccEEEEeCCCceEC-CCCccCHHHHHHHHHHHH-CCCEEEEEcC
Confidence 489999999999995 445789999998998776 5888777663
No 28
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.13 E-value=0.00077 Score=58.47 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=34.1
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
.||.|++|+||||.. .+..++++..+.+.++++ .|+.++|.|
T Consensus 2 ~~kli~~DlDGTLl~-~~~~i~~~~~~ai~~l~~-~G~~~~iaT 43 (270)
T PRK10513 2 AIKLIAIDMDGTLLL-PDHTISPAVKQAIAAARA-KGVNVVLTT 43 (270)
T ss_pred ceEEEEEecCCcCcC-CCCccCHHHHHHHHHHHH-CCCEEEEec
Confidence 589999999999995 455799999998888776 587776664
No 29
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.12 E-value=0.00057 Score=56.77 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=35.1
Q ss_pred ccEEEEcCCCcccCCCC--------CCCChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 183 FKGVVFDKDNTLTAPYS--------LTLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s--------~ei~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
+|+++||.||||+.-.. ..+.|.+.+.+.++++ .|++++|+||+.+
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~-~g~~l~I~Tn~~~ 56 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQ-AGYRVVVATNQSG 56 (181)
T ss_pred ccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHH-CCCEEEEEeCCcc
Confidence 79999999999974331 1234566777778776 6999999999875
No 30
>PTZ00174 phosphomannomutase; Provisional
Probab=97.11 E-value=0.00084 Score=58.88 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=37.7
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
..+|.|++|+||||. ..+.+++|+..+.+.++++ .|+.++|.|=.
T Consensus 3 ~~~klia~DlDGTLL-~~~~~is~~~~~ai~~l~~-~Gi~~viaTGR 47 (247)
T PTZ00174 3 MKKTILLFDVDGTLT-KPRNPITQEMKDTLAKLKS-KGFKIGVVGGS 47 (247)
T ss_pred CCCeEEEEECcCCCc-CCCCCCCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 568999999999999 4556799999998888776 69999888754
No 31
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.11 E-value=0.00087 Score=54.99 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=33.8
Q ss_pred EEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 186 VIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
|++|+||||+. .+..++|+.++.+.++.+ .|++++|.|-..
T Consensus 1 i~~DlDGTLl~-~~~~i~~~~~~al~~l~~-~g~~~~i~TGR~ 41 (254)
T PF08282_consen 1 IFSDLDGTLLN-SDGKISPETIEALKELQE-KGIKLVIATGRS 41 (254)
T ss_dssp EEEECCTTTCS-TTSSSCHHHHHHHHHHHH-TTCEEEEECSST
T ss_pred cEEEECCceec-CCCeeCHHHHHHHHhhcc-cceEEEEEccCc
Confidence 78999999995 455599999999999776 699988887543
No 32
>PRK10976 putative hydrolase; Provisional
Probab=97.09 E-value=0.00089 Score=58.10 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=34.6
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
||.|++|+||||... +.+++++..+.+.++++ .|++++|.|=-
T Consensus 2 ikli~~DlDGTLl~~-~~~is~~~~~ai~~l~~-~G~~~~iaTGR 44 (266)
T PRK10976 2 YQVVASDLDGTLLSP-DHTLSPYAKETLKLLTA-RGIHFVFATGR 44 (266)
T ss_pred ceEEEEeCCCCCcCC-CCcCCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 789999999999954 45799999988888776 68777776543
No 33
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.08 E-value=0.001 Score=57.89 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=39.4
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCC
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGN 230 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs 230 (257)
..|++++||+|+||. ....+.|.+.+.+.++++ .|.+++|+||+..+
T Consensus 6 ~~~~~~~~D~dG~l~--~~~~~~pga~e~L~~L~~-~G~~~~ivTN~~~~ 52 (242)
T TIGR01459 6 NDYDVFLLDLWGVII--DGNHTYPGAVQNLNKIIA-QGKPVYFVSNSPRN 52 (242)
T ss_pred hcCCEEEEecccccc--cCCccCccHHHHHHHHHH-CCCEEEEEeCCCCC
Confidence 459999999999997 556678889888888776 69999999997654
No 34
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.06 E-value=0.00027 Score=66.69 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=65.7
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhcCcc--cCCceecCCcccCCh---HHHHhcCccEEEEcCCCcccCCCCCCC---C
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKDRHL--ALPHVTVPDIRYIDW---AELQRRGFKGVVFDKDNTLTAPYSLTL---W 203 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~psL--f~P~~yV~SI~dID~---e~Lk~~GIKgVIfDlDNTLt~p~s~ei---~ 203 (257)
.|+|..+-+.|..+..+- +.++..+|.. |.=.++|..+.++.- +.+-..-.+.|+||+||||+.. +.++ .
T Consensus 73 ~~~R~~~k~~fk~~~lGh-~~vl~~~~~~y~~l~eW~v~~~~~v~~~~~~~~~~~~~~~i~~D~D~TL~~~-~~~v~ird 150 (303)
T PHA03398 73 RDIRKNLKTAFKTSYLGH-VFVLNEKPPMYAFLKEWYVQNYLEVYQLKSESLVWEIPHVIVFDLDSTLITD-EEPVRIRD 150 (303)
T ss_pred HHHHHHHHHHhcccccce-EEEecCCCcHHHHHHhhccceeechhhhccceeEeeeccEEEEecCCCccCC-CCccccCC
Confidence 567777777777776554 4444444442 345667777665554 3333455689999999999954 4455 6
Q ss_pred hhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 204 GPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 204 Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
|.+.+.+.++++ .|++++|+||+.
T Consensus 151 p~V~EtL~eLke-kGikLaIvTNg~ 174 (303)
T PHA03398 151 PFVYDSLDELKE-RGCVLVLWSYGN 174 (303)
T ss_pred hhHHHHHHHHHH-CCCEEEEEcCCC
Confidence 888888888876 799999999985
No 35
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.06 E-value=0.00075 Score=55.62 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=30.1
Q ss_pred ccEEEEcCCCcccCC---CCCC--------CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 183 FKGVVFDKDNTLTAP---YSLT--------LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 183 IKgVIfDlDNTLt~p---~s~e--------i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
||.|+||+||||+.. +... +.+.. .+.++++ .|++++|+||..
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~~--~i~~Lk~-~G~~i~IvTn~~ 54 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDGY--GIRCALK-SGIEVAIITGRK 54 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhHH--HHHHHHH-CCCEEEEEECCC
Confidence 689999999999962 2222 11112 3666665 699999999976
No 36
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=96.97 E-value=0.0013 Score=57.50 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=35.6
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
||.|++|+||||..+ +..++++.++.+.++++ .|++++|.|--
T Consensus 2 ~kli~~DlDGTLl~~-~~~i~~~~~~ai~~l~~-~G~~~~iaTGR 44 (272)
T PRK15126 2 ARLAAFDMDGTLLMP-DHHLGEKTLSTLARLRE-RDITLTFATGR 44 (272)
T ss_pred ccEEEEeCCCcCcCC-CCcCCHHHHHHHHHHHH-CCCEEEEECCC
Confidence 789999999999954 44799999999999876 58888887644
No 37
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.92 E-value=0.0015 Score=56.83 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=37.0
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
-+|.|++|+||||+..+. +++++..+.+.++++ -|++++|+|-..
T Consensus 2 ~~kli~~DlDGTLl~~~~-~i~~~~~~al~~~~~-~g~~v~iaTGR~ 46 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK-TISPETKEALARLRE-KGVKVVLATGRP 46 (264)
T ss_pred CeeEEEEcCCCCccCCCC-ccCHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 379999999999996544 599999998887665 699999988654
No 38
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.0012 Score=60.88 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=42.3
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCCC
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGN 233 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd 233 (257)
..+++++||+|+||. +..++-|...+++.++++ .|.++++||||..-+.+
T Consensus 6 ~~y~~~l~DlDGvl~--~G~~~ipga~e~l~~L~~-~g~~~iflTNn~~~s~~ 55 (269)
T COG0647 6 DKYDGFLFDLDGVLY--RGNEAIPGAAEALKRLKA-AGKPVIFLTNNSTRSRE 55 (269)
T ss_pred hhcCEEEEcCcCceE--eCCccCchHHHHHHHHHH-cCCeEEEEeCCCCCCHH
Confidence 458999999999998 677777888888888776 69999999999976654
No 39
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.85 E-value=0.0018 Score=54.78 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=31.8
Q ss_pred EEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 186 VIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
|++|+||||+.... ...++..+++.++++ .|+.++|+|+..
T Consensus 2 i~~DlDGTLL~~~~-~~~~~~~~~l~~l~~-~gi~~~i~TgR~ 42 (221)
T TIGR02463 2 VFSDLDGTLLDSHS-YDWQPAAPWLTRLQE-AGIPVILCTSKT 42 (221)
T ss_pred EEEeCCCCCcCCCC-CCcHHHHHHHHHHHH-CCCeEEEEcCCC
Confidence 79999999995443 355557777777655 799999999986
No 40
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.84 E-value=0.0021 Score=56.80 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=35.9
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.++.|++|+||||+.+ +..++++..+++.++++ .|++++|.|-..
T Consensus 5 ~~~~lI~~DlDGTLL~~-~~~i~~~~~~ai~~l~~-~Gi~~viaTGR~ 50 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDS-HTYDWQPAAPWLTRLRE-AQVPVILCSSKT 50 (271)
T ss_pred CCCeEEEEeCccCCcCC-CCcCcHHHHHHHHHHHH-cCCeEEEEcCCC
Confidence 56899999999999964 44577888888888776 588888777544
No 41
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.82 E-value=0.0045 Score=51.31 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=40.5
Q ss_pred ccEEEEcCCCcccCCCC-----CCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCC-------CCCchhHHHHHHH
Q 025153 183 FKGVVFDKDNTLTAPYS-----LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLG-------NCLFTAYLLIWLL 245 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s-----~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~d-------d~~~~~~~~iw~~ 245 (257)
.|.|++|+||||..... ..+.+++.+.+.++++ .|+.|+++|=-..... +.+...++.-|+.
T Consensus 1 ~K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~-~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~ 74 (126)
T TIGR01689 1 MKRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKA-LGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLN 74 (126)
T ss_pred CCEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHH-CCCEEEEECCCCchhhhccccccchhhHHHHHHHHH
Confidence 37999999999985432 2356777777777665 6999999984432221 2222336777774
No 42
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=96.79 E-value=0.0018 Score=56.76 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=35.3
Q ss_pred EEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCC
Q 025153 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLG 232 (257)
Q Consensus 186 VIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~d 232 (257)
++||+||||. ....+.|...+++..+++ .|++++++|||.|-+.
T Consensus 1 ~lfD~DGvL~--~~~~~~~~a~e~i~~l~~-~g~~~~~~tN~~~~~~ 44 (236)
T TIGR01460 1 FLFDIDGVLW--LGHKPIPGAAEALNRLRA-KGKPVVFLTNNSSRSE 44 (236)
T ss_pred CEEeCcCccC--cCCccCcCHHHHHHHHHH-CCCeEEEEECCCCCCH
Confidence 5899999998 445566788887888765 6999999999997544
No 43
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.71 E-value=0.0025 Score=58.58 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=37.1
Q ss_pred EEEEcCCCcccCCCCCCCChhHHHHHHHHHHh---cCCcEEEEeCCCCCC
Q 025153 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSV---FGHDIAVFSNSAGNL 231 (257)
Q Consensus 185 gVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~---fGikV~IVSNNaGs~ 231 (257)
+++||+||||. ....+.|...+.+..+++. +|.++++|+||.|.+
T Consensus 2 ~~ifD~DGvL~--~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s 49 (321)
T TIGR01456 2 GFAFDIDGVLF--RGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFS 49 (321)
T ss_pred EEEEeCcCceE--CCccccHHHHHHHHHHhccccccCCCEEEEecCCCCC
Confidence 68999999998 5666688888878787653 499999999999765
No 44
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.70 E-value=0.0026 Score=57.06 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=37.0
Q ss_pred ccEEEEcCCCcccCC----CCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 183 FKGVVFDKDNTLTAP----YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 183 IKgVIfDlDNTLt~p----~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
-..|++|+||||++. .+..++|+..+.+.++.+..|+.++|+|-..
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~ 63 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRS 63 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 368999999999973 4667889999988888765688888888654
No 45
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.70 E-value=0.0027 Score=55.64 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=35.6
Q ss_pred cEEEEcCCCcccCC----CCCCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 184 KGVVFDKDNTLTAP----YSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 184 KgVIfDlDNTLt~p----~s~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
++|+||+||||++. ....+++++.+.+.++.+..+..|+|||--
T Consensus 4 ~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 4 RAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred EEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 78999999999974 334478999999999888666678899966
No 46
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=96.66 E-value=0.0036 Score=54.22 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.0
Q ss_pred EEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 185 gVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.|++|+||||... +..++++..+++.++++ .|++++|+|+..
T Consensus 1 li~~DlDGTLl~~-~~~i~~~~~~~i~~l~~-~G~~~~iaTGR~ 42 (256)
T TIGR00099 1 LIFIDLDGTLLND-DHTISPSTKEALAKLRE-KGIKVVLATGRP 42 (256)
T ss_pred CEEEeCCCCCCCC-CCccCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 3789999999954 45799999988888776 599999998876
No 47
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.63 E-value=0.0038 Score=52.57 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=34.9
Q ss_pred cEEEEcCCCcccCCCC----------CCCChhHHHHHHHHHHhcCCcEEEEeCCCCC
Q 025153 184 KGVVFDKDNTLTAPYS----------LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGN 230 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s----------~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs 230 (257)
|+++||.|+||+.-.+ ..+.|.+.+.+.++++ .|++++|+||..|.
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~-~g~~l~IvSN~~g~ 57 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKK-AGYKFVMVTNQDGL 57 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHH-CCCeEEEEeCCccc
Confidence 6899999999986211 1245678787777776 69999999997653
No 48
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.50 E-value=0.013 Score=59.49 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=39.4
Q ss_pred HhcCccEEEEcCCCcccCCC----CCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 179 QRRGFKGVVFDKDNTLTAPY----SLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 179 k~~GIKgVIfDlDNTLt~p~----s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
++...|.|++|+||||++.. ...+++++.+.+.++.+.-|+.|+|+|=-.
T Consensus 488 ~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~ 541 (726)
T PRK14501 488 RAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRD 541 (726)
T ss_pred HhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC
Confidence 45678999999999999643 234678888888888875688999998543
No 49
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.46 E-value=0.0038 Score=52.37 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=29.1
Q ss_pred EEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 186 VIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
|++|+|+||+. .+..++++..+++.++++ .|+.++|.|-
T Consensus 1 i~~DlDGTLl~-~~~~i~~~~~~al~~l~~-~Gi~~~~aTG 39 (225)
T TIGR01482 1 IASDIDGTLTD-PNRAINESALEAIRKAES-VGIPVVLVTG 39 (225)
T ss_pred CeEeccCccCC-CCcccCHHHHHHHHHHHH-CCCEEEEEcC
Confidence 58999999995 345688888887777665 6777766553
No 50
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.43 E-value=0.0049 Score=51.71 Aligned_cols=43 Identities=16% Similarity=0.062 Sum_probs=34.9
Q ss_pred EEEEcCCCcccCCCC----------CCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 185 GVVFDKDNTLTAPYS----------LTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 185 gVIfDlDNTLt~p~s----------~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+|++|+|+||+..+. ..++|.+.+...++++ .|.+++++|-..
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~-~G~~ivy~TGRp 53 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQN-NGYKILYLTARP 53 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHH-cCCeEEEEcCCc
Confidence 489999999996541 4788999887877765 799999999765
No 51
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.23 E-value=0.0079 Score=52.68 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=32.4
Q ss_pred EEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 185 gVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.|++|+||||.. +....++..+++.++++ .|++++|+|...
T Consensus 1 li~~DlDGTLl~--~~~~~~~~~~ai~~l~~-~G~~~vi~TgR~ 41 (225)
T TIGR02461 1 VIFTDLDGTLLP--PGYEPGPAREALEELKD-LGFPIVFVSSKT 41 (225)
T ss_pred CEEEeCCCCCcC--CCCCchHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 479999999996 33466778888888776 699999998655
No 52
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.20 E-value=0.013 Score=51.74 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=46.4
Q ss_pred ccEEEEcCCCcccCCCC--------CCCChhHHHHHHHHHHhcCCcEEEEeCCCCCC----CCCCchhHHHHHHHHHHhh
Q 025153 183 FKGVVFDKDNTLTAPYS--------LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNL----GNCLFTAYLLIWLLLLFFS 250 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s--------~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~----dd~~~~~~~~iw~~~~~~~ 250 (257)
-++|++|.|+||..... -...|.++.+..++.+ .|++++||||-.|.- .-.+|. -..-|+...|-+
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~-~gy~lVvvTNQsGi~rgyf~~~~f~-~~~~~m~~~l~~ 82 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQR-AGYKLVVVTNQSGIGRGYFTEADFD-KLHNKMLKILAS 82 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHh-CCCeEEEEECCCCccccCccHHHHH-HHHHHHHHHHHH
Confidence 58999999999987665 2345666666777664 899999999966544 455565 334455555555
Q ss_pred h
Q 025153 251 Q 251 (257)
Q Consensus 251 ~ 251 (257)
|
T Consensus 83 ~ 83 (181)
T COG0241 83 Q 83 (181)
T ss_pred c
Confidence 4
No 53
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.14 E-value=0.0076 Score=57.52 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=37.0
Q ss_pred ccEEEEcCCCcccCCC----------CCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 183 FKGVVFDKDNTLTAPY----------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~----------s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.|+++||.||||+... ...+.|.+.+.+.++++ .|++++|+||..
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~-~G~kL~IvTNq~ 56 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQK-AGYKLVMVTNQD 56 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHh-CCCeEEEEECCc
Confidence 4789999999999753 34567888888888765 799999999964
No 54
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.10 E-value=0.0085 Score=60.02 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=37.4
Q ss_pred ccEEEEcCCCcccCCCCC----------C-CChhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 183 FKGVVFDKDNTLTAPYSL----------T-LWGPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~----------e-i~Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
.|+++||+||||+...+. . +.|.+.+.+.++.+ .|++|+|+||..|-.
T Consensus 168 ~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~-~Gy~IvIvTNQ~gI~ 226 (526)
T TIGR01663 168 EKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEA-DGFKICIFTNQGGIA 226 (526)
T ss_pred CcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHH-CCCEEEEEECCcccc
Confidence 489999999999965431 1 35777777777765 699999999998843
No 55
>PLN02887 hydrolase family protein
Probab=96.04 E-value=0.012 Score=59.55 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=40.2
Q ss_pred HHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 178 LQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 178 Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
..+..||.|++|+||||.. .+.+++++.++.+.++++ .|+.++|.|--.
T Consensus 303 ~~~~~iKLIa~DLDGTLLn-~d~~Is~~t~eAI~kl~e-kGi~~vIATGR~ 351 (580)
T PLN02887 303 FYKPKFSYIFCDMDGTLLN-SKSQISETNAKALKEALS-RGVKVVIATGKA 351 (580)
T ss_pred hhccCccEEEEeCCCCCCC-CCCccCHHHHHHHHHHHH-CCCeEEEEcCCC
Confidence 4567899999999999994 455799999998988876 688888887544
No 56
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=95.98 E-value=0.017 Score=52.11 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=23.2
Q ss_pred CCcccCChHHHHh--cCcc--EEEEcCCCcccCC
Q 025153 168 PDIRYIDWAELQR--RGFK--GVVFDKDNTLTAP 197 (257)
Q Consensus 168 ~SI~dID~e~Lk~--~GIK--gVIfDlDNTLt~p 197 (257)
..|.+|..+..++ .|-+ +|+||+|+||+.-
T Consensus 44 ~~~~~~~~~~~~~~~~~~~p~aViFDlDgTLlDS 77 (237)
T TIGR01672 44 APIHWISVAQIENSLEGRPPIAVSFDIDDTVLFS 77 (237)
T ss_pred CCeeEEEHHHHHHhcCCCCCeEEEEeCCCccccC
Confidence 4588888887764 4555 9999999999853
No 57
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.72 E-value=0.018 Score=54.58 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=32.8
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
+|.|++|+|+||... +...+++..+++.++++ .|+.|++.|=.
T Consensus 1 ~KLIftDLDGTLLd~-~~~~~~~a~~aL~~Lk~-~GI~vVlaTGR 43 (302)
T PRK12702 1 MRLVLSSLDGSLLDL-EFNSYGAARQALAALER-RSIPLVLYSLR 43 (302)
T ss_pred CcEEEEeCCCCCcCC-CCcCCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 478999999999954 45677888888888776 57877776643
No 58
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.65 E-value=0.078 Score=46.99 Aligned_cols=60 Identities=25% Similarity=0.216 Sum_probs=43.9
Q ss_pred CccEEEEcCCCcccCCC-----------CCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 025153 182 GFKGVVFDKDNTLTAPY-----------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGNCLFTAYLLIWLLLL 247 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~-----------s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd~~~~~~~~iw~~~~ 247 (257)
..+++++|+||||.... +..+.|.+.+.+.++++ .|++++|+||... ...+..+=|+.+.
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~i~i~T~r~~-----~~~~~~l~~l~~~ 227 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKA-AGYEIIVVSGRDG-----VCEEDTVEWLRQT 227 (300)
T ss_pred CCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHh-CCCEEEEEeCCCh-----hhHHHHHHHHHHc
Confidence 35899999999999643 34677888888888776 5999999999863 2334445565554
No 59
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=95.62 E-value=0.014 Score=47.60 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=26.6
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
..+++||||+||||+.. .+...++|.+..+++|.+
T Consensus 3 ~~~~~viFD~DGTLiDs-----~~~~~~a~~~~~~~~g~~ 37 (188)
T PRK10725 3 DRYAGLIFDMDGTILDT-----EPTHRKAWREVLGRYGLQ 37 (188)
T ss_pred CcceEEEEcCCCcCccC-----HHHHHHHHHHHHHHcCCC
Confidence 35899999999999942 234556788888888874
No 60
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=95.59 E-value=0.023 Score=59.81 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=45.7
Q ss_pred CcccCChHHH----HhcCccEEEEcCCCcccCCCC--CCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 169 DIRYIDWAEL----QRRGFKGVVFDKDNTLTAPYS--LTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 169 SI~dID~e~L----k~~GIKgVIfDlDNTLt~p~s--~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
.+..++.+.+ ++...|.|++|.||||++... ..++|++.+.+.++.+.-|..|+|+|--
T Consensus 578 ~~~~l~~~~i~~~y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR 642 (854)
T PLN02205 578 NFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSAR 642 (854)
T ss_pred cccccCHHHHHHHHHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 3666666554 567899999999999996552 3577889888888767678889999854
No 61
>PLN02423 phosphomannomutase
Probab=95.50 E-value=0.023 Score=50.37 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=34.4
Q ss_pred hcCccEEE-EcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 180 RRGFKGVV-FDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 180 ~~GIKgVI-fDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
++..|.++ +|+||||+. .+.+++|+..+.+.++++ . +.++|.|=.
T Consensus 3 ~~~~~~i~~~D~DGTLl~-~~~~i~~~~~~ai~~l~~-~-i~fviaTGR 48 (245)
T PLN02423 3 ARKPGVIALFDVDGTLTA-PRKEATPEMLEFMKELRK-V-VTVGVVGGS 48 (245)
T ss_pred CCccceEEEEeccCCCcC-CCCcCCHHHHHHHHHHHh-C-CEEEEECCc
Confidence 34566666 999999994 455789998888998885 3 888888844
No 62
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=95.32 E-value=0.033 Score=48.60 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=28.8
Q ss_pred EEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 186 VIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
|++|+||||+......+ ++..+++.++++ .|++++|+|..
T Consensus 2 i~~DlDGTll~~~~~~~-~~~~~~i~~l~~-~g~~~~~~TgR 41 (256)
T TIGR01486 2 IFTDLDGTLLDPHGYDW-GPAKEVLERLQE-LGIPVIPCTSK 41 (256)
T ss_pred EEEcCCCCCcCCCCcCc-hHHHHHHHHHHH-CCCeEEEEcCC
Confidence 78999999995443234 457777777665 68888888643
No 63
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=95.24 E-value=0.019 Score=51.56 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=26.7
Q ss_pred hcCccEEEEcCCCcccCCCCCCCChhH-HHHHHHHHHhcCCc
Q 025153 180 RRGFKGVVFDKDNTLTAPYSLTLWGPL-SSSIEQCKSVFGHD 220 (257)
Q Consensus 180 ~~GIKgVIfDlDNTLt~p~s~ei~Pel-~~~w~e~k~~fGik 220 (257)
..|||+||||+||||+. +. +.+ ...|.+..+++|+.
T Consensus 21 ~~~~k~vIFDlDGTLvD--S~---~~~~~~a~~~~~~~~G~~ 57 (260)
T PLN03243 21 GCGWLGVVLEWEGVIVE--DD---SELERKAWRALAEEEGKR 57 (260)
T ss_pred cCCceEEEEeCCCceeC--Cc---hHHHHHHHHHHHHHcCCC
Confidence 36899999999999993 21 122 34688888888875
No 64
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.18 E-value=0.15 Score=53.23 Aligned_cols=114 Identities=16% Similarity=0.058 Sum_probs=65.9
Q ss_pred ccccccCCccchhhhhhcHHHHHHHHhhhcchHHHHHHHHH------HHhcCcccCCceecCCcccCChHHHH-------
Q 025153 113 EPRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIVSSTVV------FAKDRHLALPHVTVPDIRYIDWAELQ------- 179 (257)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~gQ~~N~~gI~~~~~~------l~r~psLf~P~~yV~SI~dID~e~Lk------- 179 (257)
-|-+-+.|...-+...||-..|-.-.--.+=-+.+..-+.. ++....-.-+-...+++.+||.+...
T Consensus 310 nph~h~~kg~~hi~~~m~~~~l~~iyhs~l~~~~~~~~i~~~l~~~~~~~~~~~~p~~~~~p~~~~~d~~~f~~~~~~~~ 389 (694)
T PRK14502 310 NPHLHEDKGGDHLLQDMLLPSLAVIYHSPLADEAGRKMIETQLAGIEGLESGPEIPQIKLIPPPQKMDLPKFSAIIEKYL 389 (694)
T ss_pred CCccccccchhHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHhhccccccccCCCCCeecCCcccCCHHHHHHHHHHhc
Confidence 56667777777777889876532111111111111111100 11111222224455778888876543
Q ss_pred -----------------------hcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 180 -----------------------RRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 180 -----------------------~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
..-.|.|++|+|+||+.. +..+.++..+++.++++ .|+.++|.|=..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KLIfsDLDGTLLd~-d~~i~~~t~eAL~~L~e-kGI~~VIATGRs 459 (694)
T PRK14502 390 PQMVLPDGELISRAARPSRLPSSGQFKKIVYTDLDGTLLNP-LTYSYSTALDALRLLKD-KELPLVFCSAKT 459 (694)
T ss_pred hheeCCCCCccchhhhcccCCCcCceeeEEEEECcCCCcCC-CCccCHHHHHHHHHHHH-cCCeEEEEeCCC
Confidence 244689999999999954 44566777787888776 688888877543
No 65
>PRK11587 putative phosphatase; Provisional
Probab=95.15 E-value=0.023 Score=48.30 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=25.1
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
-+|+||||+||||+. +. +.....|.+..+++|+.
T Consensus 2 ~~k~viFDlDGTL~D--s~---~~~~~a~~~~~~~~g~~ 35 (218)
T PRK11587 2 RCKGFLFDLDGTLVD--SL---PAVERAWSNWADRHGIA 35 (218)
T ss_pred CCCEEEEcCCCCcCc--CH---HHHHHHHHHHHHHcCCC
Confidence 479999999999993 22 34456678877778864
No 66
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=95.11 E-value=0.028 Score=46.99 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=13.3
Q ss_pred ccEEEEcCCCcccCC
Q 025153 183 FKGVVFDKDNTLTAP 197 (257)
Q Consensus 183 IKgVIfDlDNTLt~p 197 (257)
+++|+||+||||+..
T Consensus 2 ~~~viFDlDGTL~ds 16 (221)
T TIGR02253 2 IKAIFFDLDDTLIDT 16 (221)
T ss_pred ceEEEEeCCCCCcCC
Confidence 689999999999953
No 67
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=95.07 E-value=0.024 Score=49.44 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=25.8
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcE
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDI 221 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV 221 (257)
|++||||+||||+ ++ .+-....|.+..+++|+.+
T Consensus 2 ~~avIFD~DGvLv--Ds---e~~~~~a~~~~~~~~g~~~ 35 (221)
T COG0637 2 IKAVIFDMDGTLV--DS---EPLHARAWLEALKEYGIEI 35 (221)
T ss_pred CcEEEEcCCCCcC--cc---hHHHHHHHHHHHHHcCCCC
Confidence 7999999999999 33 2333456888888899754
No 68
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=95.01 E-value=0.022 Score=49.66 Aligned_cols=40 Identities=20% Similarity=0.052 Sum_probs=27.4
Q ss_pred EEEEcCCCcccCC--CCCCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 185 GVVFDKDNTLTAP--YSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 185 gVIfDlDNTLt~p--~s~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
.|+.|+|+||+.. ++.++.|++.+.+.++.+ -|+.++++|
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~-~gi~fv~aT 44 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRG-EDSLLVYST 44 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhc-cCceEEEEc
Confidence 5788999999963 455677888887777553 344444433
No 69
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=94.94 E-value=0.032 Score=45.11 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=24.8
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
||+|+||+||||+... +-....|.+..+++|..
T Consensus 1 ~~~iiFD~DGTL~ds~-----~~~~~~~~~~~~~~g~~ 33 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTA-----PLHAQAWKHLADKYGIE 33 (185)
T ss_pred CCeEEEcCCCcccCCh-----HHHHHHHHHHHHHcCCC
Confidence 6899999999999432 23445677777778875
No 70
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=94.83 E-value=0.033 Score=46.84 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=23.7
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
||+||||+||||+. +. +.....|.+..+++|.+
T Consensus 1 ~k~iiFD~DGTL~d--s~---~~~~~~~~~~~~~~g~~ 33 (220)
T TIGR03351 1 ISLVVLDMAGTTVD--ED---GLVYRALRQAVTAAGLS 33 (220)
T ss_pred CcEEEEecCCCeec--cC---chHHHHHHHHHHHcCCC
Confidence 68999999999993 32 34445667766667774
No 71
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=94.76 E-value=0.037 Score=46.66 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=25.0
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
.+|+|+||+||||+.. . +-..+.|.+..+.+|.+
T Consensus 3 ~~~~viFD~DGTL~d~--~---~~~~~a~~~~~~~~g~~ 36 (221)
T PRK10563 3 QIEAVFFDCDGTLVDS--E---VICSRAYVTMFAEFGIT 36 (221)
T ss_pred CCCEEEECCCCCCCCC--h---HHHHHHHHHHHHHcCCC
Confidence 5899999999999942 1 23345677777778864
No 72
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=94.73 E-value=0.035 Score=46.15 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=23.1
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
||+|+||+||||+.+.. .....|.+..+.+|..
T Consensus 1 ~k~viFD~DGTL~d~~~-----~~~~~~~~~~~~~g~~ 33 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQA-----AEALALRLLFEDQGIP 33 (224)
T ss_pred CCEEEEcCcCcccccch-----HHHHHHHHHHHHhCCC
Confidence 68999999999996544 3334466665566654
No 73
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.70 E-value=0.059 Score=56.15 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=43.3
Q ss_pred cccCChHHH----HhcCccEEEEcCCCcccCCCC-------CCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 170 IRYIDWAEL----QRRGFKGVVFDKDNTLTAPYS-------LTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 170 I~dID~e~L----k~~GIKgVIfDlDNTLt~p~s-------~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
+..++.+.+ ++..-++++||.||||++... ..++|++.+.+.++.+.-+..|+|||-
T Consensus 490 ~~~l~~~~~~~~y~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSG 557 (797)
T PLN03063 490 PLELPEQDVIQQYSKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSR 557 (797)
T ss_pred CCCCCHHHHHHHHHhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 335565554 466779999999999997533 237888888888888776778999994
No 74
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.57 E-value=0.049 Score=50.86 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=31.9
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
.-+++|+.|+||||++ +.-+.. ++..++.+++. .|+.|+.+|-.
T Consensus 5 ~~~~lIFtDlD~TLl~-~~ye~~-pA~pv~~el~d-~G~~Vi~~SSK 48 (274)
T COG3769 5 QMPLLIFTDLDGTLLP-HSYEWQ-PAAPVLLELKD-AGVPVILCSSK 48 (274)
T ss_pred ccceEEEEcccCcccC-CCCCCC-ccchHHHHHHH-cCCeEEEeccc
Confidence 3478999999999996 333433 34456777776 79999988754
No 75
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=94.54 E-value=0.059 Score=46.61 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=26.3
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
|+.++|.|.+++-+ .+-|.+.+.++.+++ .|++++|+||+
T Consensus 31 ~~~~~~~~~~~~~~-----~l~pGv~elL~~Lk~-~G~~l~I~Sn~ 70 (174)
T TIGR01685 31 QNNSIIIDKSGTEV-----TLIKEVRDVLQTLKD-AGTYLATASWN 70 (174)
T ss_pred CCCCeEEeCCCCEE-----EEcccHHHHHHHHHH-CCCEEEEEeCC
Confidence 34444444444433 234677777777766 69999999998
No 76
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=94.50 E-value=0.033 Score=46.27 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=21.9
Q ss_pred cEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 184 KGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
|+|+||+||||+... . .....|.++.+.+|..
T Consensus 1 k~viFDlDGTL~d~~--~---~~~~a~~~~~~~~g~~ 32 (203)
T TIGR02252 1 KLITFDAVGTLLALK--E---PVGEVYCEIARKYGVE 32 (203)
T ss_pred CeEEEecCCceeeeC--C---CHHHHHHHHHHHhCCC
Confidence 689999999999532 2 2334566666667765
No 77
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=94.47 E-value=0.042 Score=46.26 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=23.4
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCC
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH 219 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGi 219 (257)
.+|+|+||+||||+... +.....|.+..+++|.
T Consensus 2 ~~~~viFD~DGTL~ds~-----~~~~~a~~~~~~~~~~ 34 (214)
T PRK13288 2 KINTVLFDLDGTLINTN-----ELIISSFLHTLKTYYP 34 (214)
T ss_pred CccEEEEeCCCcCccCH-----HHHHHHHHHHHHHhCC
Confidence 58999999999999432 3445567766666654
No 78
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=94.18 E-value=0.052 Score=46.86 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=24.9
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
+|+||||+||||+. +. +-....|.+..+.+|..
T Consensus 12 ~k~viFD~DGTL~D--s~---~~~~~a~~~~~~~~g~~ 44 (229)
T PRK13226 12 PRAVLFDLDGTLLD--SA---PDMLATVNAMLAARGRA 44 (229)
T ss_pred CCEEEEcCcCcccc--CH---HHHHHHHHHHHHHCCCC
Confidence 58999999999993 22 34556788887778864
No 79
>PLN03017 trehalose-phosphatase
Probab=94.16 E-value=0.1 Score=50.53 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=33.3
Q ss_pred CccEEEEcCCCcccC----CCCCCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 182 GFKGVVFDKDNTLTA----PYSLTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 182 GIKgVIfDlDNTLt~----p~s~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
.-.+|++|+||||++ |....++++..+.+.++.+ |+.++|+|=
T Consensus 110 k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La~--~~~vaIvSG 156 (366)
T PLN03017 110 KQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLAK--CFPTAIVTG 156 (366)
T ss_pred CCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHhc--CCcEEEEeC
Confidence 356788899999992 4444789999988888773 678888883
No 80
>PLN02151 trehalose-phosphatase
Probab=94.16 E-value=0.078 Score=51.05 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=35.2
Q ss_pred CccEEEEcCCCccc----CCCCCCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 182 GFKGVVFDKDNTLT----APYSLTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 182 GIKgVIfDlDNTLt----~p~s~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
.-.+|++|+|+||+ .|....++|+.++.+.++.+ ++.|+|||=
T Consensus 97 ~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~--~~~vaIvSG 143 (354)
T PLN02151 97 KQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK--CFPTAIVSG 143 (354)
T ss_pred CceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc--CCCEEEEEC
Confidence 44688899999999 67777789999998888774 468999984
No 81
>PHA02597 30.2 hypothetical protein; Provisional
Probab=94.09 E-value=0.034 Score=46.18 Aligned_cols=16 Identities=19% Similarity=0.063 Sum_probs=14.2
Q ss_pred ccEEEEcCCCcccCCC
Q 025153 183 FKGVVFDKDNTLTAPY 198 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~ 198 (257)
+|+||||+||||+.|.
T Consensus 2 ~k~viFDlDGTLiD~~ 17 (197)
T PHA02597 2 KPTILTDVDGVLLSWQ 17 (197)
T ss_pred CcEEEEecCCceEchh
Confidence 6899999999999754
No 82
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=94.04 E-value=0.057 Score=47.52 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=24.0
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
+|+||||+||||+... .... ...|.+..+.+|..
T Consensus 4 ~k~vIFDlDGTLiDs~--~~~~--~~a~~~~~~~~g~~ 37 (267)
T PRK13478 4 IQAVIFDWAGTTVDFG--SFAP--TQAFVEAFAQFGVE 37 (267)
T ss_pred eEEEEEcCCCCeecCC--CccH--HHHHHHHHHHcCCC
Confidence 7999999999999532 2111 34677777778875
No 83
>PRK09449 dUMP phosphatase; Provisional
Probab=94.00 E-value=0.05 Score=45.83 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=21.7
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
.||+|+||+||||+.+. . ...+.+..+.+|..
T Consensus 2 ~~k~iiFDlDGTLid~~---~----~~~~~~~~~~~g~~ 33 (224)
T PRK09449 2 KYDWILFDADETLFHFD---A----FAGLQRMFSRYGVD 33 (224)
T ss_pred CccEEEEcCCCchhcch---h----hHHHHHHHHHhCCC
Confidence 48999999999999522 1 23455555556654
No 84
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=93.98 E-value=0.058 Score=43.70 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=29.4
Q ss_pred cEEEEcCCCcccCCCCCC------------------CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 184 KGVVFDKDNTLTAPYSLT------------------LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s~e------------------i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
|.||+|+|+||+.-.... .-|.+.+++.++.+. ++|+|.|.+.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~--~ev~i~T~~~ 61 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH--YEVVIWTSAS 61 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH--CEEEEE-SS-
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh--ceEEEEEeeh
Confidence 689999999998544432 346777777777654 6999999875
No 85
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=93.96 E-value=0.063 Score=46.55 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=23.4
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
+|+||||+||||+.. .... ....|.+..+.+|..
T Consensus 2 ~k~viFD~DGTLiDs--~~~~--~~~a~~~~~~~~g~~ 35 (253)
T TIGR01422 2 IEAVIFDWAGTTVDF--GSFA--PTQAFVEAFAEFGVQ 35 (253)
T ss_pred ceEEEEeCCCCeecC--CCcc--HHHHHHHHHHHcCCC
Confidence 789999999999942 2211 134577777677764
No 86
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=93.91 E-value=0.063 Score=45.57 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=24.0
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
..+|+|+||+||||+... +-....|.+..+.+|.+
T Consensus 5 ~~~k~iiFD~DGTL~d~~-----~~~~~a~~~~~~~~g~~ 39 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSE-----PLWDRAELDVMASLGVD 39 (222)
T ss_pred ccCcEEEEcCCCCCCcCH-----HHHHHHHHHHHHHCCCC
Confidence 358999999999999432 23334566666667754
No 87
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=93.85 E-value=0.063 Score=44.82 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=24.1
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
..|++|+||+||||+. . .+.....|.+..+.+|.+
T Consensus 4 ~~~~~iiFD~DGTL~d--~---~~~~~~~~~~~~~~~~~~ 38 (226)
T PRK13222 4 MDIRAVAFDLDGTLVD--S---APDLAAAVNAALAALGLP 38 (226)
T ss_pred CcCcEEEEcCCccccc--C---HHHHHHHHHHHHHHCCCC
Confidence 4589999999999993 2 223344677776667654
No 88
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=93.81 E-value=0.067 Score=45.82 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=32.8
Q ss_pred CccEEEEcCCCcccCC---CCCCCC------hhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 182 GFKGVVFDKDNTLTAP---YSLTLW------GPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p---~s~ei~------Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
-||.+|||+||+||.- ++.+-. -.-...+..+++ .|++++|+||+..
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~-~Gi~laIiT~k~~ 61 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQL-CGIDVAIITSKKS 61 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHH-CCCEEEEEECCCc
Confidence 4999999999999964 232221 122234666665 6999999999864
No 89
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=93.73 E-value=0.11 Score=42.52 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=32.6
Q ss_pred ccEEEEcCCCcccCCCC--------C-----------------CCChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 183 FKGVVFDKDNTLTAPYS--------L-----------------TLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s--------~-----------------ei~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
-+.||+|+|+||+.-.. . .+-|.+.+.+..+++ |++++|+||+..
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~--~~~l~I~Ts~~~ 71 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASE--LFELVVFTAGLR 71 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHh--ccEEEEEeCCcH
Confidence 46899999999995321 1 124567777777763 689999999984
No 90
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=93.72 E-value=0.067 Score=46.93 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=23.8
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCC
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH 219 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGi 219 (257)
.+|+||||+||||+. +. +-....|.+..+++|+
T Consensus 21 ~~k~viFDlDGTLiD--s~---~~~~~a~~~~~~~~g~ 53 (248)
T PLN02770 21 PLEAVLFDVDGTLCD--SD---PLHYYAFREMLQEINF 53 (248)
T ss_pred ccCEEEEcCCCccCc--CH---HHHHHHHHHHHHHhcc
Confidence 389999999999993 22 3445667777777753
No 91
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=93.72 E-value=0.17 Score=45.82 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCcccCChHHHHh--cCc--cEEEEcCCCcccC--CC---CCC----------------------------CChhHHHHH
Q 025153 168 PDIRYIDWAELQR--RGF--KGVVFDKDNTLTA--PY---SLT----------------------------LWGPLSSSI 210 (257)
Q Consensus 168 ~SI~dID~e~Lk~--~GI--KgVIfDlDNTLt~--p~---s~e----------------------------i~Pel~~~w 210 (257)
..|.+|..+..++ .|- -+|+||+|+|++. |+ ..+ +.|.+.+.+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL 123 (237)
T PRK11009 44 APVHWVSVAQIEKSLEGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLI 123 (237)
T ss_pred CCeeEEEHHHhhhhccCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHH
Confidence 3477787777652 333 2999999999994 31 111 112244444
Q ss_pred HHHHHhcCCcEEEEeCCCC
Q 025153 211 EQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 211 ~e~k~~fGikV~IVSNNaG 229 (257)
+.++ ..|++|++|||...
T Consensus 124 ~~L~-~~G~~I~iVTnR~~ 141 (237)
T PRK11009 124 DMHV-KRGDSIYFITGRTA 141 (237)
T ss_pred HHHH-HCCCeEEEEeCCCC
Confidence 4444 46999999999753
No 92
>PLN02580 trehalose-phosphatase
Probab=93.44 E-value=0.15 Score=49.62 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHhcCccEEEEcCCCcccC----CCCCCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 177 ELQRRGFKGVVFDKDNTLTA----PYSLTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDNTLt~----p~s~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
.+++..-.+|+||.||||++ |....++|++++.+.++.+. ++|+|||=
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~--~~VAIVSG 164 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY--FPTAIISG 164 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC--CCEEEEeC
Confidence 34455668899999999984 33344788999888888765 37999994
No 93
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=93.42 E-value=0.073 Score=47.73 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=24.7
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
+|+||||+||||+. + .+.....|.+..+++|..
T Consensus 13 ~k~viFDlDGTL~D--s---~~~~~~a~~~~~~~~g~~ 45 (272)
T PRK13223 13 PRLVMFDLDGTLVD--S---VPDLAAAVDRMLLELGRP 45 (272)
T ss_pred CCEEEEcCCCcccc--C---HHHHHHHHHHHHHHcCCC
Confidence 78999999999993 2 234556677777778875
No 94
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=93.37 E-value=0.14 Score=49.66 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=37.6
Q ss_pred hcCcccCCceecCCcccCC-hHHHHhc--CccEEEEcCCCcccCCCCCCCChhH-HHHHHHHHHhcCCc
Q 025153 156 KDRHLALPHVTVPDIRYID-WAELQRR--GFKGVVFDKDNTLTAPYSLTLWGPL-SSSIEQCKSVFGHD 220 (257)
Q Consensus 156 r~psLf~P~~yV~SI~dID-~e~Lk~~--GIKgVIfDlDNTLt~p~s~ei~Pel-~~~w~e~k~~fGik 220 (257)
+.|++--|.-...+-.=-+ +..+.+. |+++||||+||||+. + .+.+ ...|.++.+++|..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VIFDlDGTLID--S---~~~i~~~a~~~l~~e~G~~ 164 (381)
T PLN02575 101 RKPGLWPPENRADNPSLHNPLLRQERMGCGWLGAIFEWEGVIIE--D---NPDLENQAWLTLAQEEGKS 164 (381)
T ss_pred CCCCCCCCCCccccccccCHHHHHHhccCCCCEEEEcCcCccee--C---HHHHHHHHHHHHHHHcCCC
Confidence 4555555555444433333 3555666 999999999999993 2 1222 24677777777765
No 95
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=93.31 E-value=0.16 Score=54.46 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=42.5
Q ss_pred cCChHHH----HhcCccEEEEcCCCcccCCC-------------CCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 172 YIDWAEL----QRRGFKGVVFDKDNTLTAPY-------------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 172 dID~e~L----k~~GIKgVIfDlDNTLt~p~-------------s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.++.+.+ ++.+-+.++||.||||++.- ...++|++.+.+.++.+.-+..|+|||--.
T Consensus 576 ~l~~~~~~~~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~ 649 (934)
T PLN03064 576 QLPPEDAIQRYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD 649 (934)
T ss_pred CCCHHHHHHHHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4555444 46677999999999999642 223678888888888876677899999643
No 96
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=93.30 E-value=0.078 Score=43.98 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=12.1
Q ss_pred ccEEEEcCCCccc
Q 025153 183 FKGVVFDKDNTLT 195 (257)
Q Consensus 183 IKgVIfDlDNTLt 195 (257)
+|+|+||+||||+
T Consensus 1 ~~~v~FD~DGTL~ 13 (205)
T PRK13582 1 MEIVCLDLEGVLV 13 (205)
T ss_pred CeEEEEeCCCCCh
Confidence 4789999999999
No 97
>PLN02940 riboflavin kinase
Probab=93.24 E-value=0.071 Score=50.56 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=25.4
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
||+||||+||||+... +...+.|.+..+++|..
T Consensus 11 ik~VIFDlDGTLvDt~-----~~~~~a~~~~~~~~G~~ 43 (382)
T PLN02940 11 VSHVILDLDGTLLNTD-----GIVSDVLKAFLVKYGKQ 43 (382)
T ss_pred CCEEEECCcCcCCcCH-----HHHHHHHHHHHHHcCCC
Confidence 9999999999999422 34556688887888864
No 98
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=93.18 E-value=0.11 Score=44.86 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=25.3
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
-+++|+||+|+||+. ..+.+...+....+++|..
T Consensus 3 ~~~~iiFDlDGTL~D-----s~~~~~~~~~~~~~~~~~~ 36 (220)
T COG0546 3 MIKAILFDLDGTLVD-----SAEDILRAFNAALAELGLP 36 (220)
T ss_pred CCCEEEEeCCCcccc-----ChHHHHHHHHHHHHHcCCC
Confidence 478999999999993 2345556677777777764
No 99
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=93.00 E-value=0.15 Score=47.95 Aligned_cols=59 Identities=15% Similarity=0.025 Sum_probs=40.1
Q ss_pred CccEEEEcCCCccc-------------C------CC-------CCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCCCCC
Q 025153 182 GFKGVVFDKDNTLT-------------A------PY-------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGNCL 235 (257)
Q Consensus 182 GIKgVIfDlDNTLt-------------~------p~-------s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd~~ 235 (257)
|-.++|||+|.|+. . |. +...-|+.++....+++ .|++|++|||-.+..
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~-~G~kIf~VSgR~e~~---- 174 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVS-LGFKIIFLSGRLKDK---- 174 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHH-CCCEEEEEeCCchhH----
Confidence 67899999999977 2 33 33345566665555554 799999999986543
Q ss_pred chhHHHHHHHH
Q 025153 236 FTAYLLIWLLL 246 (257)
Q Consensus 236 ~~~~~~iw~~~ 246 (257)
-+++.=||.-
T Consensus 175 -r~aT~~NL~k 184 (275)
T TIGR01680 175 -QAVTEANLKK 184 (275)
T ss_pred -HHHHHHHHHH
Confidence 3456666643
No 100
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=92.99 E-value=0.19 Score=45.72 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=40.9
Q ss_pred HhcCccEEEEcCCCcccC-------------------------CCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCCC
Q 025153 179 QRRGFKGVVFDKDNTLTA-------------------------PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGN 233 (257)
Q Consensus 179 k~~GIKgVIfDlDNTLt~-------------------------p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd 233 (257)
..-|..++|||+|.|+.. -.+...-|+.++...++++ .|++|+++|+-.+.
T Consensus 73 ~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~-~G~~Vf~lTGR~e~--- 148 (229)
T TIGR01675 73 SGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIE-LGIKIFLLSGRWEE--- 148 (229)
T ss_pred cCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHH-CCCEEEEEcCCChH---
Confidence 356899999999999653 1122344555555556554 79999999997642
Q ss_pred CCchhHHHHHHHHH
Q 025153 234 CLFTAYLLIWLLLL 247 (257)
Q Consensus 234 ~~~~~~~~iw~~~~ 247 (257)
..+++.=||.-.
T Consensus 149 --~r~~T~~nL~~~ 160 (229)
T TIGR01675 149 --LRNATLDNLINA 160 (229)
T ss_pred --HHHHHHHHHHHc
Confidence 334555566443
No 101
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=92.91 E-value=0.1 Score=45.26 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=25.1
Q ss_pred EEcCCCcccCCCCC----CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 187 VFDKDNTLTAPYSL----TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 187 IfDlDNTLt~p~s~----ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+||.||||++..+. .+.+++.+.+.++.+.....|+|||--.
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~ 46 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRS 46 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 58999999965552 3678888888888887666799999543
No 102
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=92.76 E-value=0.11 Score=47.18 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=26.7
Q ss_pred hcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 180 RRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 180 ~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
...+++||||+||||+. +. +.....|.+..+++|+.
T Consensus 59 ~~~~k~vIFDlDGTLiD--S~---~~~~~a~~~~~~~~G~~ 94 (273)
T PRK13225 59 PQTLQAIIFDFDGTLVD--SL---PTVVAIANAHAPDFGYD 94 (273)
T ss_pred hhhcCEEEECCcCcccc--CH---HHHHHHHHHHHHHCCCC
Confidence 34699999999999993 32 34556688887778875
No 103
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=92.72 E-value=0.24 Score=42.95 Aligned_cols=44 Identities=34% Similarity=0.385 Sum_probs=29.2
Q ss_pred cEEEEcCCCcccCCCCCCC------------------------ChhHHHHHHHHHHhcCCcEEEEe-CCC
Q 025153 184 KGVVFDKDNTLTAPYSLTL------------------------WGPLSSSIEQCKSVFGHDIAVFS-NSA 228 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s~ei------------------------~Pel~~~w~e~k~~fGikV~IVS-NNa 228 (257)
|.||||+|.||-+++-... .|.+.+.+.++++ -|+++++.| +++
T Consensus 4 klvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~-~gv~lavASRt~~ 72 (169)
T PF12689_consen 4 KLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKE-RGVKLAVASRTDE 72 (169)
T ss_dssp SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHH-CT--EEEEE--S-
T ss_pred cEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHH-CCCEEEEEECCCC
Confidence 7899999999987765443 4667777777776 799999999 544
No 104
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=92.64 E-value=0.11 Score=45.34 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.1
Q ss_pred CccEEEEcCCCcccCC
Q 025153 182 GFKGVVFDKDNTLTAP 197 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p 197 (257)
.+|+|+||+||||+..
T Consensus 9 ~~k~iiFDlDGTL~D~ 24 (238)
T PRK10748 9 RISALTFDLDDTLYDN 24 (238)
T ss_pred CceeEEEcCcccccCC
Confidence 5899999999999943
No 105
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=92.34 E-value=0.082 Score=44.28 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=13.5
Q ss_pred ccEEEEcCCCcccCC
Q 025153 183 FKGVVFDKDNTLTAP 197 (257)
Q Consensus 183 IKgVIfDlDNTLt~p 197 (257)
||+||||+||||+.+
T Consensus 2 ik~viFDldGtL~d~ 16 (211)
T TIGR02247 2 IKAVIFDFGGVLLPS 16 (211)
T ss_pred ceEEEEecCCceecC
Confidence 789999999999953
No 106
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=92.16 E-value=0.12 Score=43.19 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=21.7
Q ss_pred EEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCC
Q 025153 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH 219 (257)
Q Consensus 185 gVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGi 219 (257)
+||||+||||+. +. +-....|.+..+.+|.
T Consensus 2 ~viFD~DGTLiD--s~---~~~~~a~~~~~~~~g~ 31 (197)
T TIGR01548 2 ALVLDMDGVMAD--VS---QSYRRAIIDTVEHFGG 31 (197)
T ss_pred ceEEecCceEEe--ch---HHHHHHHHHHHHHHcC
Confidence 689999999993 22 3455667777777764
No 107
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=92.16 E-value=0.14 Score=46.37 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=24.4
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCC
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH 219 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGi 219 (257)
+++||||+||||+. +.. +-....|.+..+.+|+
T Consensus 40 ~k~VIFDlDGTLvD--S~~--~~~~~a~~~~l~~~G~ 72 (286)
T PLN02779 40 PEALLFDCDGVLVE--TER--DGHRVAFNDAFKEFGL 72 (286)
T ss_pred CcEEEEeCceeEEc--ccc--HHHHHHHHHHHHHcCC
Confidence 79999999999994 220 2334567888778887
No 108
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=92.10 E-value=0.16 Score=41.12 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=21.9
Q ss_pred EEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 185 gVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
+||||+||||+. + .+.....|.+..+.+|..
T Consensus 1 ~iiFD~DGTL~d--s---~~~~~~~~~~~~~~~g~~ 31 (185)
T TIGR01990 1 AVIFDLDGVITD--T---AEYHYLAWKALADELGIP 31 (185)
T ss_pred CeEEcCCCcccc--C---hHHHHHHHHHHHHHcCCC
Confidence 589999999993 2 234445677777777765
No 109
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=92.07 E-value=0.18 Score=42.29 Aligned_cols=16 Identities=56% Similarity=0.603 Sum_probs=14.1
Q ss_pred cCccEEEEcCCCcccC
Q 025153 181 RGFKGVVFDKDNTLTA 196 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~ 196 (257)
..+|+++||+||||+.
T Consensus 12 ~~~k~iiFD~DGTL~~ 27 (219)
T TIGR00338 12 RSKKLVVFDMDSTLIN 27 (219)
T ss_pred ccCCEEEEeCcccCCC
Confidence 4489999999999995
No 110
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=91.46 E-value=0.1 Score=45.33 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=16.7
Q ss_pred cCChHHHHhcCccEEEEcCCCcccC
Q 025153 172 YIDWAELQRRGFKGVVFDKDNTLTA 196 (257)
Q Consensus 172 dID~e~Lk~~GIKgVIfDlDNTLt~ 196 (257)
+|+|.. +|+||||+||||+.
T Consensus 4 ~~~~~~-----~k~vIFDlDGTL~d 23 (224)
T PRK14988 4 DIAWQD-----VDTVLLDMDGTLLD 23 (224)
T ss_pred CCCccc-----CCEEEEcCCCCccc
Confidence 456655 89999999999996
No 111
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=91.46 E-value=0.23 Score=45.80 Aligned_cols=73 Identities=18% Similarity=0.088 Sum_probs=43.6
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHhcCcccCCceecCCcccCChHHHHhcCccEEEEcCCCcccCC-------------CC
Q 025153 133 QLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAP-------------YS 199 (257)
Q Consensus 133 ~~~~~~gQ~~N~~gI~~~~~~l~r~psLf~P~~yV~SI~dID~e~Lk~~GIKgVIfDlDNTLt~p-------------~s 199 (257)
+-++-.-|-+|.+.... -. .+..+ ..+-.+||||+|.|+..- ++
T Consensus 48 Ey~al~~q~~n~A~~~~-~~-~~~~~---------------------~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~ 104 (266)
T TIGR01533 48 EYKALYLQAYNLAKMRL-DN-NLKKV---------------------KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFD 104 (266)
T ss_pred HHHHHHHHHHHHHHHHH-HH-HHhcc---------------------CCCCCEEEEeCccccccChHHHHHHhcCCCcCC
Confidence 36777788888877532 22 21111 123579999999998521 11
Q ss_pred C------------CCChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 200 L------------TLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 200 ~------------ei~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
. .+-|.+.+.+..+. ..|.+++||||+..
T Consensus 105 ~~~w~~wv~~~~a~~ipGA~e~L~~L~-~~G~~v~iVTnR~~ 145 (266)
T TIGR01533 105 PETWDKWVQAAQAKPVAGALDFLNYAN-SKGVKIFYVSNRSE 145 (266)
T ss_pred HHHHHHHHHcCCCCcCccHHHHHHHHH-HCCCeEEEEeCCCc
Confidence 1 12244455445544 46999999999864
No 112
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=91.25 E-value=0.17 Score=40.13 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=21.9
Q ss_pred EEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCC
Q 025153 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH 219 (257)
Q Consensus 185 gVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGi 219 (257)
+|+||+||||+.-. +.....|.++.+++|.
T Consensus 1 ~iifD~DGTL~d~~-----~~~~~~~~~~~~~~~~ 30 (154)
T TIGR01549 1 AILFDIDGTLVDSS-----FAIRRAFEETLEEFGE 30 (154)
T ss_pred CeEecCCCcccccH-----HHHHHHHHHHHHHhcc
Confidence 58999999999321 4556678888777763
No 113
>PLN02954 phosphoserine phosphatase
Probab=91.04 E-value=0.24 Score=41.79 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=14.3
Q ss_pred cCccEEEEcCCCcccC
Q 025153 181 RGFKGVVFDKDNTLTA 196 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~ 196 (257)
..+|+||||+|+||+.
T Consensus 10 ~~~k~viFDfDGTL~~ 25 (224)
T PLN02954 10 RSADAVCFDVDSTVCV 25 (224)
T ss_pred ccCCEEEEeCCCcccc
Confidence 4599999999999995
No 114
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=90.96 E-value=0.35 Score=40.83 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=34.7
Q ss_pred HhcCccEEEEcCCCcccCCCCCC----------------------------------CChhHHHHHHHHHHhcCCcEEEE
Q 025153 179 QRRGFKGVVFDKDNTLTAPYSLT----------------------------------LWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 179 k~~GIKgVIfDlDNTLt~p~s~e----------------------------------i~Pel~~~w~e~k~~fGikV~IV 224 (257)
.+.+...+|+|+|.||+--.... +-|.+.+.+.++.+ +++++|+
T Consensus 2 ~~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~--~yel~I~ 79 (156)
T TIGR02250 2 LREKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASK--LYEMHVY 79 (156)
T ss_pred CcCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHh--hcEEEEE
Confidence 46788999999999998322211 13566666666654 4799999
Q ss_pred eCCCCC
Q 025153 225 SNSAGN 230 (257)
Q Consensus 225 SNNaGs 230 (257)
+|+...
T Consensus 80 T~~~~~ 85 (156)
T TIGR02250 80 TMGTRA 85 (156)
T ss_pred eCCcHH
Confidence 998743
No 115
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=90.92 E-value=0.51 Score=39.58 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=32.2
Q ss_pred cEEEEcCCCcccCCCCCCC-----------------------ChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 184 KGVVFDKDNTLTAPYSLTL-----------------------WGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s~ei-----------------------~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
+.||+|+|.||+-...... -|.+.+++.++.+ . ++|+|+|++..
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~-~-yei~I~Ts~~~ 68 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSK-W-YELVIFTASLE 68 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHh-c-CEEEEEcCCcH
Confidence 5799999999995444432 2456777777765 3 79999998863
No 116
>PRK11590 hypothetical protein; Provisional
Probab=90.79 E-value=0.23 Score=42.60 Aligned_cols=13 Identities=46% Similarity=0.529 Sum_probs=12.0
Q ss_pred ccEEEEcCCCccc
Q 025153 183 FKGVVFDKDNTLT 195 (257)
Q Consensus 183 IKgVIfDlDNTLt 195 (257)
-|++|||+|+||+
T Consensus 6 ~k~~iFD~DGTL~ 18 (211)
T PRK11590 6 RRVVFFDLDGTLH 18 (211)
T ss_pred ceEEEEecCCCCc
Confidence 4799999999999
No 117
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=90.77 E-value=0.42 Score=44.40 Aligned_cols=49 Identities=22% Similarity=0.136 Sum_probs=37.2
Q ss_pred HHhcCccEEEEcCCCcccC----CCCCCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 178 LQRRGFKGVVFDKDNTLTA----PYSLTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 178 Lk~~GIKgVIfDlDNTLt~----p~s~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
....+-+.+++|.|+||++ |....+.+++.+.+.++.+.....|+|+|=
T Consensus 13 ~~~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSG 65 (266)
T COG1877 13 YLNARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISG 65 (266)
T ss_pred cccccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeC
Confidence 3566789999999999985 333447888888888888776556888873
No 118
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=90.68 E-value=0.13 Score=42.00 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=14.6
Q ss_pred ccEEEEcCCCcccCCCCCCC
Q 025153 183 FKGVVFDKDNTLTAPYSLTL 202 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei 202 (257)
|++|+||+|||||. +...+
T Consensus 1 i~~i~fDktGTLt~-~~~~v 19 (215)
T PF00702_consen 1 IDAICFDKTGTLTQ-GKMSV 19 (215)
T ss_dssp ESEEEEECCTTTBE-SHHEE
T ss_pred CeEEEEecCCCccc-CeEEE
Confidence 68999999999983 44334
No 119
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=90.04 E-value=0.37 Score=41.75 Aligned_cols=43 Identities=19% Similarity=0.047 Sum_probs=30.7
Q ss_pred EEEEcCCCcccCCC----------CCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 185 GVVFDKDNTLTAPY----------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 185 gVIfDlDNTLt~p~----------s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+||+|+|||||.-+ .+..++.+.+...+..+ .|.+++-+|--+
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~-~GY~ilYlTaRp 53 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIAD-NGYKILYLTARP 53 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHH-CCeEEEEECcCc
Confidence 58999999999652 22466777776655554 799988887544
No 120
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=89.99 E-value=0.28 Score=40.10 Aligned_cols=15 Identities=47% Similarity=0.576 Sum_probs=13.7
Q ss_pred CccEEEEcCCCcccC
Q 025153 182 GFKGVVFDKDNTLTA 196 (257)
Q Consensus 182 GIKgVIfDlDNTLt~ 196 (257)
.+|.|+||+|+||+.
T Consensus 3 ~~k~viFD~DGTLid 17 (201)
T TIGR01491 3 MIKLIIFDLDGTLTD 17 (201)
T ss_pred cceEEEEeCCCCCcC
Confidence 489999999999995
No 121
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=89.97 E-value=0.15 Score=42.24 Aligned_cols=16 Identities=38% Similarity=0.366 Sum_probs=13.8
Q ss_pred ccEEEEcCCCcccCCC
Q 025153 183 FKGVVFDKDNTLTAPY 198 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~ 198 (257)
+|+|+||+||||+.+.
T Consensus 1 ik~viFD~dgTLiD~~ 16 (198)
T TIGR01428 1 IKALVFDVYGTLFDVH 16 (198)
T ss_pred CcEEEEeCCCcCccHH
Confidence 5899999999999644
No 122
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=89.21 E-value=0.22 Score=42.88 Aligned_cols=37 Identities=19% Similarity=0.058 Sum_probs=21.7
Q ss_pred EEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 185 gVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
.|++|+|+||.. .+..+.+.. +.+ +. .+.|+.++|+|
T Consensus 1 li~~DlDgTLl~-~~~~~~~~~-~~~-~~-~~~gi~~viaT 37 (236)
T TIGR02471 1 LIITDLDNTLLG-DDEGLASFV-ELL-RG-SGDAVGFGIAT 37 (236)
T ss_pred CeEEeccccccC-CHHHHHHHH-HHH-Hh-cCCCceEEEEe
Confidence 378999999995 444454433 434 33 33455555444
No 123
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=89.09 E-value=0.33 Score=40.26 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 186 VIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
||||+||||+. + .+.....|.+..+.+|..
T Consensus 1 viFD~DGTL~D--s---~~~~~~~~~~~~~~~~~~ 30 (213)
T TIGR01449 1 VLFDLDGTLVD--S---APDIAAAVNMALAALGLP 30 (213)
T ss_pred CeecCCCcccc--C---HHHHHHHHHHHHHHCCCC
Confidence 69999999993 2 233445677776667764
No 124
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=89.03 E-value=0.46 Score=39.04 Aligned_cols=12 Identities=50% Similarity=0.479 Sum_probs=11.0
Q ss_pred EEEEcCCCcccC
Q 025153 185 GVVFDKDNTLTA 196 (257)
Q Consensus 185 gVIfDlDNTLt~ 196 (257)
+||||+||||+.
T Consensus 2 ~viFDlDGTL~d 13 (184)
T TIGR01993 2 VWFFDLDNTLYP 13 (184)
T ss_pred eEEEeCCCCCCC
Confidence 799999999994
No 125
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=88.72 E-value=0.76 Score=43.87 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=56.2
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhcCcc--cCCceecCCcccCCh---HHHHhcCccEEEEcCCCcccCCCCCC--CCh
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKDRHL--ALPHVTVPDIRYIDW---AELQRRGFKGVVFDKDNTLTAPYSLT--LWG 204 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~psL--f~P~~yV~SI~dID~---e~Lk~~GIKgVIfDlDNTLt~p~s~e--i~P 204 (257)
.|+|..+-..|-.++.+- +.++..+|.+ +.=.++|-++.++.- +.+.-.--.+||||+|+||+.-.... ..|
T Consensus 67 ~diR~~lK~~fk~s~lGh-~fvl~~~~~~y~~L~EW~v~~~~ev~~l~~~~~~~~~phVIVfDlD~TLItd~~~v~Ir~~ 145 (297)
T PF05152_consen 67 RDIRKNLKTAFKTSYLGH-VFVLNEKPPMYNFLKEWYVQDYSEVYQLKEESLVWEPPHVIVFDLDSTLITDEGDVRIRDP 145 (297)
T ss_pred HHHHHHHHHHhcccccCc-EEEecCCccHHHHHHHHhcCChhhhhhhhhhhccCCCCcEEEEECCCcccccCCccccCCh
Confidence 456677766666666554 4444444443 244566666655554 22222234599999999999544332 567
Q ss_pred hHHHHHHHHHHhcCCcEEEEe
Q 025153 205 PLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 205 el~~~w~e~k~~fGikV~IVS 225 (257)
.+.+.+.++++ .|--+++=|
T Consensus 146 ~v~~sL~~Lk~-~g~vLvLWS 165 (297)
T PF05152_consen 146 AVYDSLRELKE-QGCVLVLWS 165 (297)
T ss_pred HHHHHHHHHHH-cCCEEEEec
Confidence 78888999887 465566655
No 126
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=88.38 E-value=0.89 Score=42.22 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=29.7
Q ss_pred HHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHh
Q 025153 178 LQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSV 216 (257)
Q Consensus 178 Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~ 216 (257)
+++.--..++||.|+||++++. .++|++.+.+.+++..
T Consensus 6 ~~r~~~~l~lfdvdgtLt~~r~-~~~~e~~~~l~~lr~~ 43 (252)
T KOG3189|consen 6 AARDEETLCLFDVDGTLTPPRQ-KVTPEMLEFLQKLRKK 43 (252)
T ss_pred hhcCCceEEEEecCCccccccc-cCCHHHHHHHHHHhhh
Confidence 3444445789999999997776 7889999988887764
No 127
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=88.12 E-value=0.44 Score=44.32 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=30.5
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHH-HhcCC
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCK-SVFGH 219 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k-~~fGi 219 (257)
..+++++||+||||- |-+..+.+.....+.+.. +.+|+
T Consensus 13 ~~~~~l~FDiDdtLY-p~St~i~~~~~~nI~~f~~eklgi 51 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLY-PLSTGIQLMMRNNIQEFFVEKLGI 51 (244)
T ss_pred ccceEEEEecccccc-cCchhHHHHHHHHHHHHHHHHhCC
Confidence 379999999999999 678888888886666654 55666
No 128
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=88.10 E-value=0.61 Score=41.35 Aligned_cols=47 Identities=28% Similarity=0.278 Sum_probs=33.3
Q ss_pred hcCccEEEEcCCCcccCCCCCC------CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 180 RRGFKGVVFDKDNTLTAPYSLT------LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 180 ~~GIKgVIfDlDNTLt~p~s~e------i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.|.|.||+|+|.||+...... .=|-+.+++..+.+ .+.|+|.|=+.
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~--~feIvVwTAa~ 70 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE--DYDIVIWSATS 70 (195)
T ss_pred CCCCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh--CCEEEEEecCC
Confidence 5899999999999999543221 23556666666655 46899998653
No 129
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=87.66 E-value=0.46 Score=42.34 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=40.1
Q ss_pred cCccEEEEcCCCcccC--CC-----------------------CCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCCCCC
Q 025153 181 RGFKGVVFDKDNTLTA--PY-----------------------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGNCL 235 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~--p~-----------------------s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd~~ 235 (257)
.|..+||||+|.|+.. ++ ....-|..++....+++ .|++|++|||-...
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~-~G~~V~~iT~R~~~----- 143 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARS-RGVKVFFITGRPES----- 143 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHH-TTEEEEEEEEEETT-----
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHH-CCCeEEEEecCCch-----
Confidence 7889999999999742 11 11233455565555554 79999999996644
Q ss_pred chhHHHHHHHHH
Q 025153 236 FTAYLLIWLLLL 247 (257)
Q Consensus 236 ~~~~~~iw~~~~ 247 (257)
.-+.+.-||.-.
T Consensus 144 ~r~~T~~nL~~~ 155 (229)
T PF03767_consen 144 QREATEKNLKKA 155 (229)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHc
Confidence 444666666543
No 130
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=87.54 E-value=1 Score=43.22 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=38.5
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCC
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLG 232 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~d 232 (257)
.+|..++||-|+.|. ....+-|-..++++.+++ .|-++++|+||...+.
T Consensus 20 ~~~DtfifDcDGVlW--~g~~~ipGs~e~l~~L~~-~gK~i~fvTNNStksr 68 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLW--LGEKPIPGSPEALNLLKS-LGKQIIFVTNNSTKSR 68 (306)
T ss_pred hhcCEEEEcCCccee--ecCCCCCChHHHHHHHHH-cCCcEEEEeCCCcchH
Confidence 689999999999886 455666777776666555 7877999999986654
No 131
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=86.43 E-value=0.38 Score=40.08 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=15.1
Q ss_pred CccEEEEcCCCcccCCCC
Q 025153 182 GFKGVVFDKDNTLTAPYS 199 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s 199 (257)
-+|+|+||+||||.....
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 479999999999996544
No 132
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=86.24 E-value=0.5 Score=38.18 Aligned_cols=14 Identities=36% Similarity=0.366 Sum_probs=11.8
Q ss_pred EEEEcCCCcccCCC
Q 025153 185 GVVFDKDNTLTAPY 198 (257)
Q Consensus 185 gVIfDlDNTLt~p~ 198 (257)
+|+||+||||+.+.
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 58999999999544
No 133
>PLN02382 probable sucrose-phosphatase
Probab=86.20 E-value=0.84 Score=44.15 Aligned_cols=40 Identities=15% Similarity=-0.030 Sum_probs=23.8
Q ss_pred cEEEEcCCCcccCCCC-CCCC-hhHHHHHHHHHHhcCCcEEEE
Q 025153 184 KGVVFDKDNTLTAPYS-LTLW-GPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s-~ei~-Pel~~~w~e~k~~fGikV~IV 224 (257)
-.|+.|+|+||+..++ ..+. +++.+.|.++.+ -|+.+++.
T Consensus 10 ~lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~-~gi~fv~a 51 (413)
T PLN02382 10 LMIVSDLDHTMVDHHDPENLSLLRFNALWEAEYR-HDSLLVFS 51 (413)
T ss_pred EEEEEcCCCcCcCCCCccchhHHHHHHHHHHhhc-CCeeEEEE
Confidence 3678899999996543 2454 455566566443 34444433
No 134
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=85.96 E-value=0.53 Score=45.23 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=20.3
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhc
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVF 217 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~f 217 (257)
+++||||+||||+. +. +.....|.+..+++
T Consensus 241 ~k~vIFDlDGTLiD--s~---~~~~~a~~~~~~~~ 270 (459)
T PRK06698 241 LQALIFDMDGTLFQ--TD---KILELSLDDTFDHL 270 (459)
T ss_pred hhheeEccCCceec--ch---hHHHHHHHHHHHHH
Confidence 69999999999993 32 23344566655555
No 135
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.15 E-value=0.79 Score=49.39 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=25.3
Q ss_pred ccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
+|+|+||+||||+. + .+...++|.+..+++|..
T Consensus 75 ikaVIFDlDGTLiD--S---~~~~~~a~~~~~~~~G~~ 107 (1057)
T PLN02919 75 VSAVLFDMDGVLCN--S---EEPSRRAAVDVFAEMGVE 107 (1057)
T ss_pred CCEEEECCCCCeEe--C---hHHHHHHHHHHHHHcCCC
Confidence 79999999999993 2 234556788887778864
No 136
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=84.56 E-value=0.32 Score=43.31 Aligned_cols=27 Identities=22% Similarity=0.115 Sum_probs=18.0
Q ss_pred cEEEEcCCCcccCCCCCCCChhHHHHHH
Q 025153 184 KGVVFDKDNTLTAPYSLTLWGPLSSSIE 211 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s~ei~Pel~~~w~ 211 (257)
+.|+.|+||||+ .++.....++.++|.
T Consensus 3 ~ll~sDlD~Tl~-~~~~~~~~~l~~~l~ 29 (247)
T PF05116_consen 3 RLLASDLDGTLI-DGDDEALARLEELLE 29 (247)
T ss_dssp EEEEEETBTTTB-HCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCc-CCCHHHHHHHHHHHH
Confidence 578999999999 333334455555555
No 137
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=84.26 E-value=0.63 Score=37.49 Aligned_cols=16 Identities=44% Similarity=0.175 Sum_probs=13.6
Q ss_pred EEEEcCCCcccCCCCC
Q 025153 185 GVVFDKDNTLTAPYSL 200 (257)
Q Consensus 185 gVIfDlDNTLt~p~s~ 200 (257)
.||||+||||+.++..
T Consensus 3 ~iiFD~dgTL~~~~~~ 18 (188)
T TIGR01489 3 VVVSDFDGTITLNDSD 18 (188)
T ss_pred EEEEeCCCcccCCCch
Confidence 5899999999987663
No 138
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=83.61 E-value=0.93 Score=42.59 Aligned_cols=18 Identities=28% Similarity=0.139 Sum_probs=15.7
Q ss_pred HHhcCccEEEEcCCCccc
Q 025153 178 LQRRGFKGVVFDKDNTLT 195 (257)
Q Consensus 178 Lk~~GIKgVIfDlDNTLt 195 (257)
+..+.+|.|+||+|+||+
T Consensus 105 ~~~~~~~LvvfDmDGTLI 122 (322)
T PRK11133 105 PHLRTPGLLVMDMDSTAI 122 (322)
T ss_pred ccccCCCEEEEECCCCCc
Confidence 345779999999999999
No 139
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=83.47 E-value=0.46 Score=37.99 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=9.8
Q ss_pred EEEEcCCCcccCC
Q 025153 185 GVVFDKDNTLTAP 197 (257)
Q Consensus 185 gVIfDlDNTLt~p 197 (257)
+|+||+||||+.+
T Consensus 1 ~vlFDlDgtLv~~ 13 (183)
T TIGR01509 1 AILFDLDGVLVDT 13 (183)
T ss_pred CeeeccCCceech
Confidence 4788888888765
No 140
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=83.36 E-value=0.96 Score=37.81 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=16.3
Q ss_pred EEEcCCCcccCCCCCCCChhHHHHHHHHHHh
Q 025153 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSV 216 (257)
Q Consensus 186 VIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~ 216 (257)
||||+||||+. + .+-..+.|.+..++
T Consensus 1 iiFDlDGTL~D--s---~~~~~~~~~~~~~~ 26 (205)
T TIGR01454 1 VVFDLDGVLVD--S---FAVMREAFAIAYRE 26 (205)
T ss_pred CeecCcCcccc--C---HHHHHHHHHHHHHH
Confidence 69999999993 2 22344455555443
No 141
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=82.22 E-value=0.69 Score=35.79 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=18.7
Q ss_pred EEEcCCCcccCCCCCCCChhHHHHHHHH-HHhcCCc
Q 025153 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQC-KSVFGHD 220 (257)
Q Consensus 186 VIfDlDNTLt~p~s~ei~Pel~~~w~e~-k~~fGik 220 (257)
|+||+||||+.+.. ....+|.+. .+.+|..
T Consensus 1 iifD~dgtL~d~~~-----~~~~~~~~~~~~~~~~~ 31 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP-----AIFRALQRLALEEFGLE 31 (176)
T ss_dssp EEEESBTTTEEHHH-----HHHHHHHHHHHHHTTHH
T ss_pred cEEECCCCcEeCHH-----HHHHHHHHHHHHHhCCC
Confidence 79999999994332 333455553 4555544
No 142
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=78.67 E-value=4.6 Score=36.74 Aligned_cols=43 Identities=23% Similarity=0.078 Sum_probs=30.5
Q ss_pred ecCCcccCChHHHHhc-CccEEEEcCCCcccCCCCCCCChhHHHH
Q 025153 166 TVPDIRYIDWAELQRR-GFKGVVFDKDNTLTAPYSLTLWGPLSSS 209 (257)
Q Consensus 166 yV~SI~dID~e~Lk~~-GIKgVIfDlDNTLt~p~s~ei~Pel~~~ 209 (257)
.|.|+.+| .+.++.. .=.-||||+|+||+.|.+.-..+.-..|
T Consensus 3 ~v~s~~eV-~~~~~~~~~~tLvvfDiDdTLi~~~~~lg~~~w~~~ 46 (252)
T PF11019_consen 3 EVYSFHEV-QDYLENADQDTLVVFDIDDTLITPKQPLGSPAWYQW 46 (252)
T ss_pred EecCHHHH-HHHHHcCCCCeEEEEEcchhhhcCccccCCchhHHH
Confidence 35677777 7777655 6677999999999988755555554443
No 143
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=77.74 E-value=3.6 Score=38.57 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=40.0
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
+++||+++|+-+||- .+....|..++++..++. .+.+|=.|+|..+-+
T Consensus 5 ~~v~gvLlDlSGtLh--~e~~avpga~eAl~rLr~-~~~kVkFvTNttk~S 52 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLH--IEDAAVPGAVEALKRLRD-QHVKVKFVTNTTKES 52 (262)
T ss_pred cccceEEEeccceEe--cccccCCCHHHHHHHHHh-cCceEEEEecCcchh
Confidence 689999999999997 566677888888888875 578999999998644
No 144
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=76.66 E-value=1.5 Score=36.73 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=11.8
Q ss_pred cEEEEcCCCcccCC
Q 025153 184 KGVVFDKDNTLTAP 197 (257)
Q Consensus 184 KgVIfDlDNTLt~p 197 (257)
..||||+||||+.+
T Consensus 1 ~~viFDldgvL~d~ 14 (199)
T PRK09456 1 MLYIFDLGNVIVDI 14 (199)
T ss_pred CEEEEeCCCccccC
Confidence 36899999999975
No 145
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=75.65 E-value=4 Score=40.82 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=41.2
Q ss_pred HHhcCccEEEEcCCCcccCCC--CCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 178 LQRRGFKGVVFDKDNTLTAPY--SLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 178 Lk~~GIKgVIfDlDNTLt~p~--s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.+.|.+.+.++.|++++..- ..++-|++.+.++++++ .|++++|+|+..
T Consensus 380 ~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~-~Gi~v~ilSgd~ 431 (562)
T TIGR01511 380 KAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKR-RGIEPVMLTGDN 431 (562)
T ss_pred hhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHH-cCCeEEEEcCCC
Confidence 347899999999999987654 55688889888888876 699999999875
No 146
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=75.39 E-value=2.6 Score=37.18 Aligned_cols=56 Identities=29% Similarity=0.273 Sum_probs=30.1
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc--EEEEeCCCCCCCCCCchhHHHHHHHHH
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD--IAVFSNSAGNLGNCLFTAYLLIWLLLL 247 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik--V~IVSNNaGs~dd~~~~~~~~iw~~~~ 247 (257)
...+.++||+|+||+. .+.|..+.+.+|.. +.=+.-.+. ....||.+..-.|.++|
T Consensus 3 ~~~~L~vFD~D~TLi~----------~~~~~~~~~~~g~~~~v~~~t~~~~-~~~~~~~~~~~~~v~~l 60 (212)
T COG0560 3 RMKKLAVFDLDGTLIN----------AELIDELARGAGVGEEVLAITERAM-RGELDFEESLRLRVALL 60 (212)
T ss_pred CccceEEEecccchhh----------HHHHHHHHHHhCCHHHHHHHHHHHh-cccccHHHHHHHHHHHh
Confidence 3467899999999995 22344444444442 111111111 12226776666666654
No 147
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=73.87 E-value=1.9 Score=36.93 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=11.7
Q ss_pred cEEEEcCCCcccCC
Q 025153 184 KGVVFDKDNTLTAP 197 (257)
Q Consensus 184 KgVIfDlDNTLt~p 197 (257)
+.|+||+||||+.-
T Consensus 4 ~~vifDfDgTi~~~ 17 (219)
T PRK09552 4 IQIFCDFDGTITNN 17 (219)
T ss_pred cEEEEcCCCCCCcc
Confidence 38999999999843
No 148
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=73.33 E-value=1.9 Score=34.90 Aligned_cols=13 Identities=54% Similarity=0.675 Sum_probs=10.6
Q ss_pred EEEcCCCcccCCC
Q 025153 186 VVFDKDNTLTAPY 198 (257)
Q Consensus 186 VIfDlDNTLt~p~ 198 (257)
++||+|+||+.-+
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999544
No 149
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=71.68 E-value=2.1 Score=35.41 Aligned_cols=14 Identities=50% Similarity=0.553 Sum_probs=10.9
Q ss_pred EEEcCCCcccCCCC
Q 025153 186 VVFDKDNTLTAPYS 199 (257)
Q Consensus 186 VIfDlDNTLt~p~s 199 (257)
++||+|+||+..++
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 68999999996443
No 150
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=70.29 E-value=3 Score=36.34 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=18.7
Q ss_pred cEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCC
Q 025153 184 KGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH 219 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGi 219 (257)
+.++||+|+||+. + .|.+.....|.
T Consensus 2 ~la~FDlD~TLi~--------~---~w~~~~~~~g~ 26 (203)
T TIGR02137 2 EIACLDLEGVLVP--------E---IWIAFAEKTGI 26 (203)
T ss_pred eEEEEeCCcccHH--------H---HHHHHHHHcCC
Confidence 4689999999993 1 36677767775
No 151
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=70.11 E-value=2.9 Score=39.03 Aligned_cols=31 Identities=29% Similarity=0.221 Sum_probs=24.4
Q ss_pred CCcccCChHHHHhcCccEEEEcCCCcccCCCC
Q 025153 168 PDIRYIDWAELQRRGFKGVVFDKDNTLTAPYS 199 (257)
Q Consensus 168 ~SI~dID~e~Lk~~GIKgVIfDlDNTLt~p~s 199 (257)
.....+....+...|-|.||+|+|+||+ +.+
T Consensus 74 ~~~~~~~~~~~~~~~kk~lVLDLDeTLv-Hss 104 (262)
T KOG1605|consen 74 TPLSPVLPLRLATVGRKTLVLDLDETLV-HSS 104 (262)
T ss_pred ccccccCCcccccCCCceEEEeCCCccc-ccc
Confidence 3455566677779999999999999998 444
No 152
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.66 E-value=8.1 Score=39.84 Aligned_cols=49 Identities=27% Similarity=0.249 Sum_probs=29.3
Q ss_pred HhcCccEEEEcCCCcccC---------------CCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 179 QRRGFKGVVFDKDNTLTA---------------PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 179 k~~GIKgVIfDlDNTLt~---------------p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
...-.|++|+|+||||-- ..+-+..-++...+..+++ .|.=++|-|=|.
T Consensus 218 ~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~k-qGVlLav~SKN~ 281 (574)
T COG3882 218 SGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKK-QGVLLAVCSKNT 281 (574)
T ss_pred hCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHh-ccEEEEEecCCc
Confidence 456789999999999731 1111122344455555554 477677777654
No 153
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=68.03 E-value=3.3 Score=36.10 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.2
Q ss_pred CccEEEEcCCCcccCC
Q 025153 182 GFKGVVFDKDNTLTAP 197 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p 197 (257)
-.|..+||+|+|||.-
T Consensus 4 ~~~la~FDfDgTLt~~ 19 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQ 19 (210)
T ss_pred cCcEEEEcCCCCCccC
Confidence 3578999999999943
No 154
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=67.38 E-value=2.7 Score=33.66 Aligned_cols=14 Identities=50% Similarity=0.579 Sum_probs=10.6
Q ss_pred EEEcCCCcccCCCC
Q 025153 186 VVFDKDNTLTAPYS 199 (257)
Q Consensus 186 VIfDlDNTLt~p~s 199 (257)
++||+|+||+.-..
T Consensus 2 ~~fD~DgTl~~~~s 15 (177)
T TIGR01488 2 AIFDFDGTLTRQDS 15 (177)
T ss_pred EEecCccccccchh
Confidence 78999999885333
No 155
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=61.80 E-value=13 Score=36.73 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=34.4
Q ss_pred cEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhc---CCcEEEEeCCCCCCCC
Q 025153 184 KGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVF---GHDIAVFSNSAGNLGN 233 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~f---GikV~IVSNNaGs~dd 233 (257)
=|++||+|+.|.. +. .+-|+..+++..+.... -+..+++.|..|..+.
T Consensus 36 fgfafDIDGVL~R-G~-~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~ 86 (389)
T KOG1618|consen 36 FGFAFDIDGVLFR-GH-RPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILES 86 (389)
T ss_pred eeEEEecccEEEe-cC-CCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchh
Confidence 3899999999993 33 44455555676665543 4579999999998763
No 156
>cd08506 PBP2_clavulanate_OppA2 The substrate-binding domain of an oligopeptide binding protein (OppA2) from the biosynthesis pathway of the beta-lactamase inhibitor clavulanic acid contains the type 2 periplasmic binding fold. Clavulanic acid (CA), a clinically important beta-lactamase inhibitor, is one of a family of clavams produced as secondary metabolites by fermentation of Streptomyces clavuligeru. The biosynthesis of CA proceeds via multiple steps from the precursors, glyceraldehyde-3-phosphate and arginine. CA possesses a characteristic (3R,5R) stereochemistry essential for reaction with penicillin-binding proteins and beta-lactamases. Two genes (oppA1 and oppA2) in the clavulanic acid gene cluster encode oligopeptide-binding proteins that are required for CA biosynthesis. OppA1/2 is involved in the binding and transport of peptides across the cell membrane of Streptomyces clavuligerus. Most of other periplasmic binding proteins are comprised of only two globular subdomains cor
Probab=61.39 E-value=33 Score=32.22 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=49.0
Q ss_pred HHHHHHHhhhcchHHHHHHHHH-HHhcC-cccCCcee--cC-C------cccCCh----HHHHhcCccEEEEcCCCcccC
Q 025153 132 SQLKAALGQRINVEGIVSSTVV-FAKDR-HLALPHVT--VP-D------IRYIDW----AELQRRGFKGVVFDKDNTLTA 196 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~-l~r~p-sLf~P~~y--V~-S------I~dID~----e~Lk~~GIKgVIfDlDNTLt~ 196 (257)
.++|+||...||.++|...+.- -...+ ..+.|... .. . -..-|+ +.|++.|++++-+- |..
T Consensus 250 ~~vRkAl~~aidr~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~ekAk~lL~~aG~~g~~l~----~~~ 325 (466)
T cd08506 250 VKVRQAVAYAVDRAALVRAFGGPAGGEPATTILPPGIPGYEDYDPYPTKGPKGDPDKAKELLAEAGVPGLKLT----LAY 325 (466)
T ss_pred HHHHHHHHHhcCHHHHHHHhcCCccccccccccCCCCCCCcccccccCCCCCCCHHHHHHHHHHcCCCCceEE----EEe
Confidence 4699999999999998863220 00111 12223221 11 1 112233 44788999865443 332
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCcEEE
Q 025153 197 PYSLTLWGPLSSSIEQCKSVFGHDIAV 223 (257)
Q Consensus 197 p~s~ei~Pel~~~w~e~k~~fGikV~I 223 (257)
+.... ..++.+.+.+-.++.|++|=|
T Consensus 326 ~~~~~-~~~~a~~i~~~l~~iGI~v~i 351 (466)
T cd08506 326 RDTAV-DKKIAEALQASLARAGIDVTL 351 (466)
T ss_pred CCCch-HHHHHHHHHHHHHHcCCeEEE
Confidence 33332 566777788877889997554
No 157
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=59.99 E-value=9 Score=38.33 Aligned_cols=54 Identities=26% Similarity=0.298 Sum_probs=40.2
Q ss_pred hcCccEEEEcCCCcccCCCCC-----------CCChhHHHHHHHHHHhcCCcEEEEeCCCCCCCCC
Q 025153 180 RRGFKGVVFDKDNTLTAPYSL-----------TLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGNC 234 (257)
Q Consensus 180 ~~GIKgVIfDlDNTLt~p~s~-----------ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd~ 234 (257)
+-|.|.+.||+|+||+.-.+. -+.+++...+..+-+ -|+.++|.+|.+|-.+-.
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~-~g~~l~iftnq~~i~r~~ 136 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQ-DGIKLFIFTNQNGIARGK 136 (422)
T ss_pred CCCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhcc-CCeEEEEEecccccccCc
Confidence 467899999999999865441 245666665666544 599999999999887744
No 158
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=59.62 E-value=77 Score=29.18 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=51.6
Q ss_pred HHHHhhhcchHHHHHHHHHHHhcCcccCC---ceecCCcccCC----hHHHHhcCccEEEEcCCCcccCCCCCCCChhHH
Q 025153 135 KAALGQRINVEGIVSSTVVFAKDRHLALP---HVTVPDIRYID----WAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLS 207 (257)
Q Consensus 135 ~~~~gQ~~N~~gI~~~~~~l~r~psLf~P---~~yV~SI~dID----~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~ 207 (257)
.++|..-+|+..+...+..+ |....=.| =.|.+.|+..- .+.+++.|+.||++- | -+.+|..
T Consensus 64 ~~AL~~G~~~~~~~~~~~~~-r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-D---------Lp~ee~~ 132 (258)
T PRK13111 64 LRALAAGVTLADVFELVREI-REKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP-D---------LPPEEAE 132 (258)
T ss_pred HHHHHcCCCHHHHHHHHHHH-HhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC-C---------CCHHHHH
Confidence 57788888999999877765 42221134 23445555544 567899999999982 1 1224554
Q ss_pred HHHHHHHHhcCCc-EEEEeCCC
Q 025153 208 SSIEQCKSVFGHD-IAVFSNSA 228 (257)
Q Consensus 208 ~~w~e~k~~fGik-V~IVSNNa 228 (257)
+ +.+..++.|+. |.++|.+.
T Consensus 133 ~-~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 133 E-LRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred H-HHHHHHHcCCcEEEEeCCCC
Confidence 4 44444458886 66688776
No 159
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=57.14 E-value=5.4 Score=34.09 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=10.0
Q ss_pred EEEcCCCcccCCC
Q 025153 186 VVFDKDNTLTAPY 198 (257)
Q Consensus 186 VIfDlDNTLt~p~ 198 (257)
|+||+|+|||.-+
T Consensus 2 ~~fDFDgTit~~d 14 (214)
T TIGR03333 2 IICDFDGTITNND 14 (214)
T ss_pred EEeccCCCCCcch
Confidence 6889999988543
No 160
>PRK14129 heat shock protein HspQ; Provisional
Probab=56.52 E-value=5.3 Score=33.20 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.3
Q ss_pred HhcCccEEEEcCCCccc
Q 025153 179 QRRGFKGVVFDKDNTLT 195 (257)
Q Consensus 179 k~~GIKgVIfDlDNTLt 195 (257)
|-.||||||||+|=...
T Consensus 15 rl~~yrGVV~DVDP~fs 31 (105)
T PRK14129 15 SLLGYLGVVVDIDPEYS 31 (105)
T ss_pred eecCCCeEEEeeCCCcC
Confidence 45799999999997765
No 161
>cd08503 PBP2_NikA_DppA_OppA_like_17 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=55.41 E-value=56 Score=30.74 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhcC--cccCC-ceec-CCc--ccCCh----HHHHhcCccEEEEcCCCcccCCCCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKDR--HLALP-HVTV-PDI--RYIDW----AELQRRGFKGVVFDKDNTLTAPYSLT 201 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~p--sLf~P-~~yV-~SI--~dID~----e~Lk~~GIKgVIfDlDNTLt~p~s~e 201 (257)
..+|+|+...||.++|...+..=...+ ....| ..-. ..+ ..-|+ +.|++.|++++-+ ||.......
T Consensus 258 ~~vRkAi~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~eaG~~~~~l----~l~~~~~~~ 333 (460)
T cd08503 258 PRVRRALKLAVDREALVETVLLGYGTVGNDHPVAPIPPYYADLPQREYDPDKAKALLAEAGLPDLEV----ELVTSDAAP 333 (460)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcCCceeccCCCCCCCccccccCcccCCCHHHHHHHHHHcCCCCceE----EEEecCCCc
Confidence 469999999999999876332100011 11111 1100 011 12233 5688999987211 333223322
Q ss_pred CChhHHHHHHHHHHhcCCcEEEE
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~IV 224 (257)
......+.+.+-.+..|++|-|.
T Consensus 334 ~~~~~a~~i~~~l~~~Gi~v~i~ 356 (460)
T cd08503 334 GAVDAAVLFAEQAAQAGININVK 356 (460)
T ss_pred cHHHHHHHHHHHHHhhCCEEEEE
Confidence 45566677777777789986553
No 162
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=54.91 E-value=10 Score=29.81 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=24.4
Q ss_pred CcccCCceecCCcccC-ChHHHHhcCccEEE
Q 025153 158 RHLALPHVTVPDIRYI-DWAELQRRGFKGVV 187 (257)
Q Consensus 158 psLf~P~~yV~SI~dI-D~e~Lk~~GIKgVI 187 (257)
|+.+.|.+|+.+.... |++.|++.||+.||
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi 31 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVI 31 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEE
Confidence 4567788999887654 68999999999987
No 163
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=54.58 E-value=15 Score=28.25 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 198 YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 198 ~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
....+.|.+.+.+.++++ .|++++||||+.
T Consensus 74 ~~~~~~~~~~~~L~~l~~-~~~~~~i~Sn~~ 103 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKA-KGIPLVIVSNGS 103 (176)
T ss_dssp GGEEESTTHHHHHHHHHH-TTSEEEEEESSE
T ss_pred hccchhhhhhhhhhhccc-ccceeEEeecCC
Confidence 344567788887888765 599999999984
No 164
>cd08497 PBP2_NikA_DppA_OppA_like_14 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=54.54 E-value=46 Score=31.93 Aligned_cols=83 Identities=10% Similarity=0.055 Sum_probs=50.7
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhcCcccCCceecCCcccCCh--HHHHhcCccE----EEEcCCCc---ccCCCCCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDW--AELQRRGFKG----VVFDKDNT---LTAPYSLTL 202 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~psLf~P~~yV~SI~dID~--e~Lk~~GIKg----VIfDlDNT---Lt~p~s~ei 202 (257)
..+|+||...||.++|...+. . +...|. -++++- +.|++.|++. ...++||+ |+-......
T Consensus 289 ~~vR~Al~~aIdr~~i~~~~~---~--g~~~~~-----~~d~~kAk~lL~~aG~~~~~g~~~~~~~G~~l~l~~~~~~~~ 358 (491)
T cd08497 289 IRVREALALAFDFEWMNKNLF---Y--GQYTRT-----RFNLRKALELLAEAGWTVRGGDILVNADGEPLSFEILLDSPT 358 (491)
T ss_pred HHHHHHHHHhhCHHHHHHHHh---c--CcCCcC-----CCCHHHHHHHHHHcCCccCCCCEEECCCCCEEEEEEEeCCCc
Confidence 569999999999999886322 2 222332 123332 5688999973 36667773 221112223
Q ss_pred ChhHHHHHHHHHHhcCCcEEEE
Q 025153 203 WGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 203 ~Pel~~~w~e~k~~fGikV~IV 224 (257)
...+.+.+.+-+++.|++|-|.
T Consensus 359 ~~~~a~~i~~~l~~iGi~v~i~ 380 (491)
T cd08497 359 FERVLLPYVRNLKKLGIDASLR 380 (491)
T ss_pred HHHHHHHHHHHHHhcCceEEEe
Confidence 4455666777777789987764
No 165
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=54.16 E-value=18 Score=30.25 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.4
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGN 230 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNaGs 230 (257)
.+.|.+.+.+.++++ .|++++|+||+...
T Consensus 94 ~~~~~~~~~L~~L~~-~g~~l~i~Sn~~~~ 122 (211)
T TIGR02247 94 KLRPSMMAAIKTLRA-KGFKTACITNNFPT 122 (211)
T ss_pred ccChhHHHHHHHHHH-CCCeEEEEeCCCCc
Confidence 456778887777776 59999999998643
No 166
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=53.62 E-value=71 Score=30.65 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=17.7
Q ss_pred hcCCcEEEEeCCCCCCCCCCch
Q 025153 216 VFGHDIAVFSNSAGNLGNCLFT 237 (257)
Q Consensus 216 ~fGikV~IVSNNaGs~dd~~~~ 237 (257)
+.|.+.++|||..|...|-..+
T Consensus 232 ~~G~d~I~vsnhgG~~~d~~~~ 253 (344)
T cd02922 232 EYGVDGIVLSNHGGRQLDTAPA 253 (344)
T ss_pred HcCCCEEEEECCCcccCCCCCC
Confidence 4699999999999998775444
No 167
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=53.30 E-value=18 Score=28.80 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=22.1
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 200 ~ei~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
..+.|.+.+.+..+++ .|++++|+||+..
T Consensus 84 ~~~~~g~~~~l~~l~~-~g~~~~i~Tn~~~ 112 (183)
T TIGR01509 84 LKPLPGVEPLLEALRA-RGKKLALLTNSPR 112 (183)
T ss_pred CccCcCHHHHHHHHHH-CCCeEEEEeCCch
Confidence 3556778777777765 5899999999874
No 168
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=51.93 E-value=14 Score=34.16 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=21.5
Q ss_pred cCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc
Q 025153 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik 220 (257)
.-||+|+||.+|||..... ....-|-+..+.+|.+
T Consensus 5 ~~iravtfD~~~tLl~~~~-----~~~~~y~~i~~~~gl~ 39 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLLATLP-----PVMEVYCEIAEAYGLE 39 (237)
T ss_pred cceEEEEEeCCCceeecCC-----ccHHHHHHHHHHhCCC
Confidence 3488999999999984222 2223344544555543
No 169
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=51.10 E-value=8.1 Score=34.51 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=30.3
Q ss_pred HhcCccEEEEcCCCcccCCCCCC---CChhHHH------HHHHHHHhcCCcEEEEeCC
Q 025153 179 QRRGFKGVVFDKDNTLTAPYSLT---LWGPLSS------SIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 179 k~~GIKgVIfDlDNTLt~p~s~e---i~Pel~~------~w~e~k~~fGikV~IVSNN 227 (257)
+...||-+|+|.|+|||. +..- -.+++.+ .=.++....|+++.|+|--
T Consensus 4 ra~~IkLli~DVDGvLTD-G~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr 60 (170)
T COG1778 4 RAKNIKLLILDVDGVLTD-GKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGR 60 (170)
T ss_pred hhhhceEEEEeccceeec-CeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCC
Confidence 467799999999999993 2221 1222221 0123444589999999853
No 170
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=50.02 E-value=21 Score=29.86 Aligned_cols=28 Identities=4% Similarity=0.240 Sum_probs=22.4
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
.+.|.+.+.+.++++ .|++++||||+..
T Consensus 94 ~~~~g~~~~L~~L~~-~g~~~~i~Tn~~~ 121 (221)
T TIGR02253 94 RVYPGVRDTLMELRE-SGYRLGIITDGLP 121 (221)
T ss_pred CCCCCHHHHHHHHHH-CCCEEEEEeCCch
Confidence 466788888888776 5899999999863
No 171
>cd08512 PBP2_NikA_DppA_OppA_like_7 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=49.86 E-value=84 Score=29.59 Aligned_cols=89 Identities=16% Similarity=0.233 Sum_probs=49.1
Q ss_pred HHHHHHHhhhcchHHHHHHHHHH-Hh-cCcccCCce--ecCCc--ccCCh----HHHHhcCcc-EEEEcCCCcccCCCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVF-AK-DRHLALPHV--TVPDI--RYIDW----AELQRRGFK-GVVFDKDNTLTAPYSL 200 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l-~r-~psLf~P~~--yV~SI--~dID~----e~Lk~~GIK-gVIfDlDNTLt~p~s~ 200 (257)
..+|+|+...||.++|...+..= .. ...++-|.. +-+.+ +.-|+ +.|++.|++ |+=+ +|......
T Consensus 269 ~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~eaG~~~g~~l----~l~~~~~~ 344 (476)
T cd08512 269 PKVRQAIAYAIDYDGIIDQVLKGQGKPHPGPLPDGLPGGAPDLPPYKYDLEKAKELLAEAGYPNGFKL----TLSYNSGN 344 (476)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcCCceecCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHcCCCCCcEE----EEEeCCCC
Confidence 56999999999999988643210 01 112233322 11222 22344 457888986 4222 23222222
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEE
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
.....+.+.+.+.+++.|++|-|.
T Consensus 345 ~~~~~~a~~i~~~l~~~Gi~v~~~ 368 (476)
T cd08512 345 EPREDIAQLLQASLAQIGIKVEIE 368 (476)
T ss_pred cchHHHHHHHHHHHHHhCCeEEEE
Confidence 234566677777777789976553
No 172
>cd08513 PBP2_thermophilic_Hb8_like The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold. This family includes the substrate-binding domain of an ABC-type oligopeptide-binding protein Hb8 from Thermus thermophilius and its closest homologs from other bacteria. The structural topology of this substrate-binding domain is similar to those of DppA from Escherichia coli and OppA from Salmonella typhimurium, and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporter
Probab=49.49 E-value=74 Score=29.99 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=51.9
Q ss_pred HHHHHHHhhhcchHHHHHHHHHH--HhcCcccCCce--ecCCc--ccCCh----HHHHhcCcc----EEEEcCCC---cc
Q 025153 132 SQLKAALGQRINVEGIVSSTVVF--AKDRHLALPHV--TVPDI--RYIDW----AELQRRGFK----GVVFDKDN---TL 194 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l--~r~psLf~P~~--yV~SI--~dID~----e~Lk~~GIK----gVIfDlDN---TL 194 (257)
..+|+|+...||.++|+..+..= ......+-|.. +-... +.-|+ +.|++.|++ |.+.+.|+ +|
T Consensus 260 ~~vR~Al~~aiDr~~i~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~d~~kAk~lL~eaG~~~~~~g~~~~~~g~~l~l 339 (482)
T cd08513 260 VRVRQALAYAIDRDAIVKTLYGGKATPAPTPVPPGSWADDPLVPAYEYDPEKAKQLLDEAGWKLGPDGGIREKDGTPLSF 339 (482)
T ss_pred HHHHHHHHhhcCHHHHHHHHhcCccceeccCCCCCccccCCCcccCCCCHHHHHHHHHHcCCccCCCCcEEcCCCcEEEE
Confidence 56999999999999988633210 00112222221 11111 12344 468889986 34556666 23
Q ss_pred --cCCCCCCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 195 --TAPYSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 195 --t~p~s~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
...........+.+.+.+-.++.|++|-|..
T Consensus 340 ~l~~~~~~~~~~~~a~~i~~~l~~iGi~v~~~~ 372 (482)
T cd08513 340 TLLTTSGNAVRERVAELIQQQLAKIGIDVEIEN 372 (482)
T ss_pred EEEeCCCChHHHHHHHHHHHHHHHcCCEEEEee
Confidence 2122212334566677777777899866543
No 173
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=48.97 E-value=23 Score=29.35 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 200 ~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
..+.|.+.+.+.++++ .|++++|+||+.
T Consensus 91 ~~~~~~~~~~L~~L~~-~g~~~~i~Sn~~ 118 (198)
T TIGR01428 91 LPPHPDVPAGLRALKE-RGYRLAILSNGS 118 (198)
T ss_pred CCCCCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 3466788887777765 589999999976
No 174
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=48.35 E-value=24 Score=29.55 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.2
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.|.+.+.+..+++ .|++++|+||+.
T Consensus 85 ~~~g~~e~L~~l~~-~g~~~~i~Sn~~ 110 (199)
T PRK09456 85 LRPEVIAIMHKLRE-QGHRVVVLSNTN 110 (199)
T ss_pred cCHHHHHHHHHHHh-CCCcEEEEcCCc
Confidence 56788887777766 699999999986
No 175
>cd08489 PBP2_NikA The substrate-binding component of an ABC-type nickel import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel transport system, which functions in the import of nickel and in the control of chemotactic response away from nickel. The ATP-binding cassette (ABC) type nickel transport system is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, the initial nickel receptor. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides,
Probab=47.50 E-value=89 Score=29.58 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhcchHHHHHHHHH-H-HhcCcccCCceec--CCc--ccCCh----HHHHhcCccE----EEEcCCCc---
Q 025153 131 WSQLKAALGQRINVEGIVSSTVV-F-AKDRHLALPHVTV--PDI--RYIDW----AELQRRGFKG----VVFDKDNT--- 193 (257)
Q Consensus 131 ~~~~~~~~gQ~~N~~gI~~~~~~-l-~r~psLf~P~~yV--~SI--~dID~----e~Lk~~GIKg----VIfDlDNT--- 193 (257)
-..+|+||.+.||.++|...+.- . .....++-|.... ... ..-|+ +.|++.|++. -+.+.|++
T Consensus 256 d~~vR~Al~~aiDr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~~~~~g~~~~~g~~~~ 335 (488)
T cd08489 256 DLKVREAINYAIDKEAISKGILYGLEKPADTLFAPNVPYADIDLKPYSYDPEKANALLDEAGWTLNEGDGIREKDGKPLS 335 (488)
T ss_pred cHHHHHHHHHhcCHHHHHHHHhcCcccccccccCCCCCCCCCCcccCCCCHHHHHHHHHHcCCCcCCCCceEccCCceEE
Confidence 36799999999999998753320 0 0011122221111 111 12233 4678899852 12466663
Q ss_pred cc--CCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 194 LT--APYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 194 Lt--~p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
|+ .+........+...+.+-.+..|++|-|.
T Consensus 336 ~~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~ 368 (488)
T cd08489 336 LELVYQTDNALQKSIAEYLQSELKKIGIDLNII 368 (488)
T ss_pred EEEEecCCCchHHHHHHHHHHHHHHcCcEEEEe
Confidence 32 23333345566677777777789986554
No 176
>cd08502 PBP2_NikA_DppA_OppA_like_16 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=47.47 E-value=88 Score=29.69 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=51.0
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHH----hcCcccCCcee---cCC---cccCCh----HHHHhcCccEEEEcCCCcccCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFA----KDRHLALPHVT---VPD---IRYIDW----AELQRRGFKGVVFDKDNTLTAP 197 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~----r~psLf~P~~y---V~S---I~dID~----e~Lk~~GIKgVIfDlDNTLt~p 197 (257)
..+|+|+...||.++|...+..-. ...+++-|... -.. ...-|+ +.|.+.|+++.-+ +|...
T Consensus 264 ~~vR~Ai~~aidr~~i~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~d~~kA~~lL~~aG~~g~~l----~l~~~ 339 (472)
T cd08502 264 PKIRRAVLAALDQEDLLAAAVGDPDFYKVCGSMFPCGTPWYSEAGKEGYNKPDLEKAKKLLKEAGYDGEPI----VILTP 339 (472)
T ss_pred HHHHHHHHHhcCHHHHHHHHhCCCcccccCCccCCCCCcccccccccccCcCCHHHHHHHHHHcCCCCceE----EEEEC
Confidence 369999999999999886432110 11122322211 111 123343 5588899876422 34333
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 198 YSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 198 ~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
.......++.+.+.+-++..|++|-|.
T Consensus 340 ~~~~~~~~~a~~i~~~l~~iGI~v~v~ 366 (472)
T cd08502 340 TDYAYLYNAALVAAQQLKAAGFNVDLQ 366 (472)
T ss_pred CCCcchhhHHHHHHHHHHhcCcEEEEE
Confidence 333445567777888777889987664
No 177
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=46.99 E-value=66 Score=23.25 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEE
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIA 222 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~ 222 (257)
..|.+.|.++.+++....+. +..++++...+.+..+..|+++.
T Consensus 16 ~~l~~~g~~vtli~~~~~~~----~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 16 EALAELGKEVTLIERSDRLL----PGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHTTSEEEEEESSSSSS----TTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHhCcEEEEEeccchhh----hhcCHHHHHHHHHHHHHCCCEEE
Confidence 45688999999999999988 45667777777777776776654
No 178
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=46.86 E-value=54 Score=26.78 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=31.2
Q ss_pred HHHhcCccEEEEcCCCccc---C-CCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 177 ELQRRGFKGVVFDKDNTLT---A-PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDNTLt---~-p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
.|.+.|.|++++|.|-.=. . +......+.+.....++. ..+++++|+=..++..
T Consensus 23 ~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~-~~~yD~VIiD~pp~~~ 80 (169)
T cd02037 23 ALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVD-WGELDYLVIDMPPGTG 80 (169)
T ss_pred HHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhh-cCCCCEEEEeCCCCCc
Confidence 4567899999999994421 1 232222233333233322 1367899998888754
No 179
>cd08510 PBP2_Lactococcal_OppA_like The substrate binding component of an ABC-type lactococcal OppA-like transport system contains. This family represents the substrate binding domain of an ATP-binding cassette (ABC)-type oligopeptide import system from Lactococcus lactis and other gram-positive bacteria, as well as its closet homologs from gram-negative bacteria. Oligopeptide-binding protein (OppA) from Lactococcus lactis can bind peptides of length from 4 to at least 35 residues without sequence preference. The oligopeptide import system OppABCDEF is consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in sev
Probab=46.82 E-value=1.2e+02 Score=29.34 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=52.2
Q ss_pred HHHHHHHhhhcchHHHHHHHHH-HHhcCcccCCce----ecCCc--ccCCh----HHHHhcCcc-----EEEEcCCCc--
Q 025153 132 SQLKAALGQRINVEGIVSSTVV-FAKDRHLALPHV----TVPDI--RYIDW----AELQRRGFK-----GVVFDKDNT-- 193 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~-l~r~psLf~P~~----yV~SI--~dID~----e~Lk~~GIK-----gVIfDlDNT-- 193 (257)
..+|+|+...||.++|...+.. .......+.|.. +-+.+ +.-|+ +.|.+.|++ |+....|+.
T Consensus 293 ~~vR~Ai~~aiDr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ak~lL~eaG~~~~~~dg~~~~~~G~~l 372 (516)
T cd08510 293 KNLRQAMAYAIDNDAVGKKFYNGLRTRANSLIPPVFKDYYDSELKGYTYDPEKAKKLLDEAGYKDVDGDGFREDPDGKPL 372 (516)
T ss_pred HHHHHHHHHhhCHHHHHHHHhCCCCeeeccCcCCCCcccCCcccccCCCCHHHHHHHHHHcCCEEcCCCeeEECCCCcEE
Confidence 4699999999999998864321 001111222321 11122 12343 458899997 455556663
Q ss_pred ---ccCCCCCCCChhHHHHHHHHHHhcCCcEEE
Q 025153 194 ---LTAPYSLTLWGPLSSSIEQCKSVFGHDIAV 223 (257)
Q Consensus 194 ---Lt~p~s~ei~Pel~~~w~e~k~~fGikV~I 223 (257)
|+...+......+.+.+.+..++.|++|-|
T Consensus 373 ~i~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~i 405 (516)
T cd08510 373 TINFAAMSGSETAEPIAQYYIQQWKKIGLNVEL 405 (516)
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHHcCceEEe
Confidence 222222333445566677777778998777
No 180
>cd08507 PBP2_SgrR_like The C-terminal solute-binding domain of DNA-binding transcriptional regulator SgrR is related to the ABC-type oligopeptide-binding proteins and contains the type 2 periplasmic-binding fold. A novel family of SgrR transcriptional regulator contains a two-domain structure with an N terminal DNA-binding domain of the winged helix family and a C-terminal solute-binding domain. The C-terminal domain shows strong homology with the ABC-type oligopeptide-binding protein family, a member of the type 2 periplasmic-binding fold protein (PBP2) superfamily that also includes the C-terminal substrate-binding domain of LysR-type transcriptional regulators. SgrR (SugaR transport-related Regulator) is negatively autoregulated and activates transcription of divergent operon SgrS, which encodes a small RNA required for recovery from glucose-phosphate stress. Hence, the small RNA SgrS and SgrR, the transcription factor that controls sgrS expression, are both required for recovery f
Probab=45.30 E-value=39 Score=32.00 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=46.5
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHhcC-cccCCcee-cCCcccCCh--HHHHhcCccEEEEcCCCcccCCCCCCCChhHHH
Q 025153 133 QLKAALGQRINVEGIVSSTVVFAKDR-HLALPHVT-VPDIRYIDW--AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSS 208 (257)
Q Consensus 133 ~~~~~~gQ~~N~~gI~~~~~~l~r~p-sLf~P~~y-V~SI~dID~--e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~ 208 (257)
.+|+|+...||.++|+..+. ..- +...|-.. ++. ++++- +.|.+.|+++.=+ +|+...... ..++.+
T Consensus 245 ~vRqAi~~aiDr~~i~~~~~---~~~~~~~~~a~~~~p~-~d~~~Ak~lL~eaG~~~~~~----~l~~~~~~~-~~~~a~ 315 (448)
T cd08507 245 AFRRALSELLDPEALIQHLG---GERQRGWFPAYGLLPE-WPREKIRRLLKESEYPGEEL----TLATYNQHP-HREDAK 315 (448)
T ss_pred HHHHHHHHhcCHHHHHHHhh---cccccceeEcCCCCCc-cCHHHHHhhccccCCCCceE----EEEEcCCCc-hHHHHH
Confidence 59999999999999886432 110 00111111 111 33332 4577899876211 232222223 557777
Q ss_pred HHHHHHHhcCCcEEEE
Q 025153 209 SIEQCKSVFGHDIAVF 224 (257)
Q Consensus 209 ~w~e~k~~fGikV~IV 224 (257)
.+.+..++.|++|-|.
T Consensus 316 ~l~~~l~~~Gi~v~l~ 331 (448)
T cd08507 316 WIQQRLAKHGIRLEIH 331 (448)
T ss_pred HHHHHHHHcCcEEEEE
Confidence 7888777789976543
No 181
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=45.24 E-value=27 Score=34.68 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=40.9
Q ss_pred HHHHhcCccEEEEcCCCcccCC--CCCCCChhHHHHHHHHHHhcC-CcEEEEeCCC
Q 025153 176 AELQRRGFKGVVFDKDNTLTAP--YSLTLWGPLSSSIEQCKSVFG-HDIAVFSNSA 228 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p--~s~ei~Pel~~~w~e~k~~fG-ikV~IVSNNa 228 (257)
+...+.|.+.+.+..|+++... ....+-|++.+.+.++++ .| ++++|+||..
T Consensus 357 ~~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~-~g~i~v~ivTgd~ 411 (556)
T TIGR01525 357 NEGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKR-AGGIKLVMLTGDN 411 (556)
T ss_pred HHHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHH-cCCCeEEEEeCCC
Confidence 3456789999999999986533 345688899888888776 68 9999999965
No 182
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=44.82 E-value=29 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=16.2
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.|.+.+.+..+++ .|++++||||+.
T Consensus 81 ~~~g~~e~l~~l~~-~g~~~~IvS~~~ 106 (201)
T TIGR01491 81 LRDYAEELVRWLKE-KGLKTAIVSGGI 106 (201)
T ss_pred CCccHHHHHHHHHH-CCCEEEEEeCCc
Confidence 44566665666554 577777777664
No 183
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=44.27 E-value=34 Score=33.83 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=31.8
Q ss_pred hcCccEEEEcCCCcccCC-----------------CCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 180 RRGFKGVVFDKDNTLTAP-----------------YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 180 ~~GIKgVIfDlDNTLt~p-----------------~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.|| ++|.|+|.|+.-- ....+-|.+-+|.+.+.+.....|.-|||+.
T Consensus 159 ~a~i-giISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSP 223 (373)
T COG4850 159 RAGI-GIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSP 223 (373)
T ss_pred ccce-eeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCCh
Confidence 4454 7889999985422 2334556776666666654336799999997
No 184
>PRK08238 hypothetical protein; Validated
Probab=44.13 E-value=71 Score=31.96 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=51.0
Q ss_pred ccchhhhhhcHHHHHHHHhhhcchHHHHHHHHHHHhcCcccCCceecCCcccCChHHHHhcCccEEEEcCCCcccCCCCC
Q 025153 121 YWTVLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSL 200 (257)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~gQ~~N~~gI~~~~~~l~r~psLf~P~~yV~SI~dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ 200 (257)
.++.+-+.+.+.-++..+.+ |...+......+++.+ ..||++-.+.+ |+|....+
T Consensus 18 DgTLi~td~l~e~~~~~l~~--~p~~~~~l~~~~~~g~-----------------a~lK~~~a~~~--~~d~~~lp---- 72 (479)
T PRK08238 18 DGTLIRTDLLHESIFALLRR--NPLALLRLPLWLLRGK-----------------AALKRRLARRV--DLDVATLP---- 72 (479)
T ss_pred CCCccccchHHHHHHHHHHh--ChHHHHHHHHHHHhcH-----------------HHHHHHHHhhc--CCChhhCC----
Confidence 35677788888777776633 4444444333333322 55666555533 66766553
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
..|++.+.++++++ .|.+++|+||+.
T Consensus 73 -~~pga~e~L~~lk~-~G~~v~LaTas~ 98 (479)
T PRK08238 73 -YNEEVLDYLRAERA-AGRKLVLATASD 98 (479)
T ss_pred -CChhHHHHHHHHHH-CCCEEEEEeCCC
Confidence 44677777777665 688999999876
No 185
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=44.01 E-value=23 Score=32.17 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=25.5
Q ss_pred hcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCC
Q 025153 180 RRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH 219 (257)
Q Consensus 180 ~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGi 219 (257)
..++.+++||.|+||+ +. ..-+.+.|.+....+|.
T Consensus 7 ~~~~~~~lfD~dG~lv--dt---e~~y~~~~~~~~~~ygk 41 (222)
T KOG2914|consen 7 SLKVSACLFDMDGTLV--DT---EDLYTEAWQELLDRYGK 41 (222)
T ss_pred ccceeeEEEecCCcEE--ec---HHHHHHHHHHHHHHcCC
Confidence 3578899999999999 22 22345668888777774
No 186
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=43.42 E-value=29 Score=33.19 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=28.5
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhcC-CcEEEEeCCCC
Q 025153 193 TLTAPYSLTLWGPLSSSIEQCKSVFG-HDIAVFSNSAG 229 (257)
Q Consensus 193 TLt~p~s~ei~Pel~~~w~e~k~~fG-ikV~IVSNNaG 229 (257)
|++.-+++++.|.+-+.++.+++ .| ++++||+|+.-
T Consensus 84 tis~~GEPTLy~~L~elI~~~k~-~g~~~tflvTNgsl 120 (296)
T COG0731 84 TISLSGEPTLYPNLGELIEEIKK-RGKKTTFLVTNGSL 120 (296)
T ss_pred EEeCCCCcccccCHHHHHHHHHh-cCCceEEEEeCCCh
Confidence 45666888999999886777666 67 69999999874
No 187
>cd08516 PBP2_NikA_DppA_OppA_like_11 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=42.75 E-value=1.4e+02 Score=27.88 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=48.6
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHh--cCcccCCce---ec---CCcccCCh----HHHHhcCcc-EEEEcCCCcccCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAK--DRHLALPHV---TV---PDIRYIDW----AELQRRGFK-GVVFDKDNTLTAPY 198 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r--~psLf~P~~---yV---~SI~dID~----e~Lk~~GIK-gVIfDlDNTLt~p~ 198 (257)
.++|+||...||.++|...+..=.. ...++.|.. +- .....-|+ +.|++.|++ ++-+ +|+...
T Consensus 251 ~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~kA~~lL~~aG~~~g~~l----~l~~~~ 326 (457)
T cd08516 251 PKVRQAIAYAIDRDAIVDAAFFGRGTPLGGLPSPAGSPAYDPDDAPCYKYDPEKAKALLAEAGYPNGFDF----TILVTS 326 (457)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcCCcEECCCCCCCCcccccChhhcccCCCCHHHHHHHHHhcCCCCCceE----EEEeCC
Confidence 5699999999999998763321000 112333332 11 11122344 457888986 3111 333333
Q ss_pred CCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 199 SLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 199 s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
......++.+.+.+-.++.|++|-|.
T Consensus 327 ~~~~~~~~a~~i~~~l~~~Gi~v~~~ 352 (457)
T cd08516 327 QYGMHVDTAQVIQAQLAAIGINVEIE 352 (457)
T ss_pred CCccHHHHHHHHHHHHHHcCceEEEE
Confidence 32344566677777777789987553
No 188
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=42.73 E-value=20 Score=38.10 Aligned_cols=49 Identities=24% Similarity=0.124 Sum_probs=32.5
Q ss_pred HhcCccEEEEcCCCcccCCCCCC----------CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 179 QRRGFKGVVFDKDNTLTAPYSLT----------LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 179 k~~GIKgVIfDlDNTLt~p~s~e----------i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+..-|.||-|+|||||.-+... .+-.++..+-+.+ +.|.+++-+|=-+
T Consensus 526 WkWn~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik-~NGYk~lyLSARa 584 (738)
T KOG2116|consen 526 WKWNDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIK-ENGYKILYLSARA 584 (738)
T ss_pred EecCCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHH-hCCeeEEEEehhh
Confidence 46778999999999999543321 1233444444444 4799998888544
No 189
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=42.56 E-value=64 Score=27.72 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=31.1
Q ss_pred hHHHHhcCccEEEEcC---CCcccCCCCC------CCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 175 WAELQRRGFKGVVFDK---DNTLTAPYSL------TLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 175 ~e~Lk~~GIKgVIfDl---DNTLt~p~s~------ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
+..+++.||+.||+=- .+..+.|-+- ......++...+..++.|++|.|=-+
T Consensus 26 ~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 26 FRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred HHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 4568999999998741 2222222221 12333555666777779999887433
No 190
>PLN02591 tryptophan synthase
Probab=42.23 E-value=1.6e+02 Score=27.07 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=49.0
Q ss_pred HHHHhhhcchHHHHHHHHHHHhcCcccCCc---eecCCcccCC----hHHHHhcCccEEEEcCCCcccCCCCCCCChhHH
Q 025153 135 KAALGQRINVEGIVSSTVVFAKDRHLALPH---VTVPDIRYID----WAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLS 207 (257)
Q Consensus 135 ~~~~gQ~~N~~gI~~~~~~l~r~psLf~P~---~yV~SI~dID----~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~ 207 (257)
.+++.+-+|+..+...+..+ |+. .=.|= .|.+.|+..- ++.+++.|+.|||+= +-+.+|..
T Consensus 54 ~rAL~~G~~~~~~~~~~~~~-r~~-~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip----------DLP~ee~~ 121 (250)
T PLN02591 54 TRALEKGTTLDSVISMLKEV-APQ-LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP----------DLPLEETE 121 (250)
T ss_pred HHHHHcCCCHHHHHHHHHHH-hcC-CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC----------CCCHHHHH
Confidence 57899999999999977764 422 11342 2445555444 356789999999873 11223443
Q ss_pred HHHHHHHHhcCCc-EEEEeCCC
Q 025153 208 SSIEQCKSVFGHD-IAVFSNSA 228 (257)
Q Consensus 208 ~~w~e~k~~fGik-V~IVSNNa 228 (257)
.+.+..++.|+. |.+||=+.
T Consensus 122 -~~~~~~~~~gl~~I~lv~Ptt 142 (250)
T PLN02591 122 -ALRAEAAKNGIELVLLTTPTT 142 (250)
T ss_pred -HHHHHHHHcCCeEEEEeCCCC
Confidence 344444457775 66665444
No 191
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=42.07 E-value=85 Score=24.11 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=28.2
Q ss_pred cCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 189 DKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 189 DlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
+.|.+++.--...-.+++.+..+.+++ .|.+|+.++++.++.
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~-~g~~vi~iT~~~~s~ 87 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKR-RGAPIIAITGNPNST 87 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH-CCCeEEEEeCCCCCc
Confidence 555554444444566788886777665 699999998876543
No 192
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=41.90 E-value=13 Score=33.90 Aligned_cols=16 Identities=44% Similarity=0.353 Sum_probs=13.0
Q ss_pred EEEEcCCCcccCCCCC
Q 025153 185 GVVFDKDNTLTAPYSL 200 (257)
Q Consensus 185 gVIfDlDNTLt~p~s~ 200 (257)
.||||+|+||+.-++.
T Consensus 2 LvvfDFD~TIvd~dsd 17 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSD 17 (234)
T ss_pred EEEEeCCCCccCCccH
Confidence 5899999999966554
No 193
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.52 E-value=65 Score=27.52 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=30.9
Q ss_pred hhhcchHHHHHHHHHHHhcCcccCCceecCCcccC---ChHHHHh-cCccEEEEcCCCcc
Q 025153 139 GQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYI---DWAELQR-RGFKGVVFDKDNTL 194 (257)
Q Consensus 139 gQ~~N~~gI~~~~~~l~r~psLf~P~~yV~SI~dI---D~e~Lk~-~GIKgVIfDlDNTL 194 (257)
++.+|++.|.+ +.||+.+..-..- +.+.|.+ .|+.+++++-.+++
T Consensus 62 ~~~~n~E~i~~-----------l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~ 110 (262)
T cd01147 62 GNTPNYEKIAA-----------LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSL 110 (262)
T ss_pred CCCCCHHHHHh-----------cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCch
Confidence 45689999886 3577766543322 3577876 99999999865533
No 194
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=41.45 E-value=80 Score=26.72 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=36.9
Q ss_pred cCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcE--EEEe
Q 025153 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDI--AVFS 225 (257)
Q Consensus 172 dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV--~IVS 225 (257)
.|||+.|++.||+.|++=. + -+..-..|.+..-+.++++ .|+.+ +..+
T Consensus 11 ~id~~~~k~~gi~fviiKa----t-eG~~y~D~~~~~~~~~a~~-aGl~~G~Yhy~ 60 (184)
T cd06525 11 NINFNAVKDSGVEVVYIKA----T-EGTTFVDSYFNENYNGAKA-AGLKVGFYHFL 60 (184)
T ss_pred CCCHHHHHhCCCeEEEEEe----c-CCCcccCHhHHHHHHHHHH-CCCceEEEEEe
Confidence 6899999999999999876 2 3445578888888888776 68864 4444
No 195
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=41.30 E-value=78 Score=22.62 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCcccCCceecCCcccCChHHHHhcCccEEEEcCCCcccCCCCC-CCC-hhHHHHHHHHHHhcCCcEE
Q 025153 145 EGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSL-TLW-GPLSSSIEQCKSVFGHDIA 222 (257)
Q Consensus 145 ~gI~~~~~~l~r~psLf~P~~yV~SI~dID~e~Lk~~GIKgVIfDlDNTLt~p~s~-ei~-Pel~~~w~e~k~~fGikV~ 222 (257)
.|..++.. ++++. ...|..+.. .++.|.. .|+||+--... .+. ++-.+.+.+..+ .|.+++
T Consensus 5 ~G~~a~~~-~L~~~-----g~~v~~~~~-~~~~l~~---------~~~tll~i~~~~~~~~~~~~~~l~~~v~-~G~~lv 67 (70)
T PF14258_consen 5 NGTYALYQ-LLEEQ-----GVKVERWRK-PYEALEA---------DDGTLLVIGPDLRLSEPEEAEALLEWVE-AGNTLV 67 (70)
T ss_pred hHHHHHHH-HHHHC-----CCeeEEecc-cHHHhCC---------CCCEEEEEeCCCCCCchHHHHHHHHHHH-cCCEEE
Confidence 35554333 44443 444555555 3666643 44443333332 233 344455666666 588888
Q ss_pred EEe
Q 025153 223 VFS 225 (257)
Q Consensus 223 IVS 225 (257)
|++
T Consensus 68 l~a 70 (70)
T PF14258_consen 68 LAA 70 (70)
T ss_pred EeC
Confidence 874
No 196
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=41.08 E-value=72 Score=24.28 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=23.1
Q ss_pred HHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
..|++.|+++.++|.+-.. +.+.+..++...+++.+|=
T Consensus 22 ~~l~~~G~~v~~~d~~~~~-------------~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 22 AYLRKAGHEVDILDANVPP-------------EELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHTTBEEEEEESSB-H-------------HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHCCCeEEEECCCCCH-------------HHHHHHHhcCCCcEEEEEc
Confidence 3567888888888776532 2233333345667777765
No 197
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=40.92 E-value=14 Score=31.10 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=11.8
Q ss_pred hcCccEEEEcCCCc
Q 025153 180 RRGFKGVVFDKDNT 193 (257)
Q Consensus 180 ~~GIKgVIfDlDNT 193 (257)
-.||+|||||+|=-
T Consensus 25 lfpfrGVV~DvDPe 38 (116)
T COG3785 25 LFPFRGVVFDVDPE 38 (116)
T ss_pred hcccceEEEecCcc
Confidence 35899999999965
No 198
>cd08494 PBP2_NikA_DppA_OppA_like_6 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=40.19 E-value=1.7e+02 Score=27.25 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=48.3
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhc--CcccCCce--ecC--CcccCCh----HHHHhcCccE-EEEcCCCcccCCCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKD--RHLALPHV--TVP--DIRYIDW----AELQRRGFKG-VVFDKDNTLTAPYSL 200 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~--psLf~P~~--yV~--SI~dID~----e~Lk~~GIKg-VIfDlDNTLt~p~s~ 200 (257)
..+|+||...||.++|...+..-... ...+-|.. +.. ....-|+ +.|++.|++. .-+ +|..+...
T Consensus 251 ~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~kA~~lL~~aG~~~g~~l----~l~~~~~~ 326 (448)
T cd08494 251 VRVRQAIRYAIDRKALIDAAWDGYGTPIGGPISPLDPGYVDLTGLYPYDPDKARQLLAEAGAAYGLTL----TLTLPPLP 326 (448)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcCcceecccccCCCccccccccccCCCCHHHHHHHHHHcCCCCCeEE----EEEecCCc
Confidence 46999999999999988643210001 12232321 111 1233455 5678899854 222 22222222
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEE
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
....+.+.+.+..++.|++|-|.
T Consensus 327 -~~~~~a~~i~~~l~~~GI~v~i~ 349 (448)
T cd08494 327 -YARRIGEIIASQLAEVGITVKIE 349 (448)
T ss_pred -chhHHHHHHHHHHHhcCcEEEEE
Confidence 33456666777777789986553
No 199
>cd08508 PBP2_NikA_DppA_OppA_like_1 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=40.17 E-value=1.4e+02 Score=28.38 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=47.5
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhcC--cccCCce--ecCCc--ccCCh----HHHHhcCcc-EEEEcCCCcccCCCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKDR--HLALPHV--TVPDI--RYIDW----AELQRRGFK-GVVFDKDNTLTAPYSL 200 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~p--sLf~P~~--yV~SI--~dID~----e~Lk~~GIK-gVIfDlDNTLt~p~s~ 200 (257)
..+|+||...||.+.|...+..=...+ +++-|.. +-+.. +.-|+ +.|++.|++ ++-+ +++.+..
T Consensus 261 ~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~d~~kA~~lL~eaG~~~g~~l----~~~~~~~- 335 (470)
T cd08508 261 LKVRQAIAAAVNVDEVVEFVGAGVAQPGNSVIPPGLLGEDADAPVYPYDPAKAKALLAEAGFPNGLTL----TFLVSPA- 335 (470)
T ss_pred HHHHHHHHHhcCHHHHHHHHhCCccccccCCCCCCcccccccCCCCCCCHHHHHHHHHHcCCCCCceE----EEEecCC-
Confidence 458999999999999886332100111 1222221 11111 12343 357888885 3322 2322222
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
.....+.+.+.+-.+..|++|-|.+
T Consensus 336 ~~~~~~a~~l~~~l~~~Gi~v~~~~ 360 (470)
T cd08508 336 AGQQSIMQVVQAQLAEAGINLEIDV 360 (470)
T ss_pred chHHHHHHHHHHHHHhcCcEEEEEE
Confidence 2334555667776777899987754
No 200
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=39.98 E-value=34 Score=28.67 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=19.3
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+.|.+.+.+.++++ .|++++||||+.
T Consensus 85 ~~~~g~~~~l~~l~~-~g~~~~IvS~~~ 111 (219)
T TIGR00338 85 PLTEGAEELVKTLKE-KGYKVAVISGGF 111 (219)
T ss_pred CcCCCHHHHHHHHHH-CCCEEEEECCCc
Confidence 355677776777665 588888888864
No 201
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=39.67 E-value=52 Score=25.40 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=36.0
Q ss_pred HHHHhcCccEEEEcCCCcccCCCCC----CCChhHHHHHHHHHHhcCC-cEEEEeCCCCC
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYSL----TLWGPLSSSIEQCKSVFGH-DIAVFSNSAGN 230 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s~----ei~Pel~~~w~e~k~~fGi-kV~IVSNNaGs 230 (257)
+.| +.|++++.+|.=|.=-..... .-.++..+.+.+..+..|. +++||..|-|.
T Consensus 19 ~~l-~~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg 77 (228)
T PF12697_consen 19 EAL-ARGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILVGHSMGG 77 (228)
T ss_dssp HHH-HTTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHH
T ss_pred HHH-hCCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccccccccccccccccc
Confidence 456 589999999998863222211 1223455667777777775 69999988764
No 202
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=39.55 E-value=87 Score=27.38 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=36.9
Q ss_pred cCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEE
Q 025153 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAV 223 (257)
Q Consensus 172 dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~I 223 (257)
.|||+.+++.|++.|++=- .-+..-.+|....-|+++++ .|+++-.
T Consensus 19 ~IDw~~v~~~gi~Fv~iKA-----TEG~~~~D~~f~~n~~~A~~-~Gl~vGa 64 (190)
T cd06419 19 YIDFNSLQSNGISFVYLRA-----TQGASYFDDNFLSNFSRAQG-TGLSVGV 64 (190)
T ss_pred ccCHHHHHhCCCeEEEEEe-----ecCCCccChhHHHHHHHHHH-CCCCEEE
Confidence 6999999999999999853 35666788888888999887 6887443
No 203
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=38.77 E-value=37 Score=28.30 Aligned_cols=28 Identities=7% Similarity=0.203 Sum_probs=21.9
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 200 ~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
..+.|.+.+.+.++++ .|++++|+||+.
T Consensus 74 ~~~~~g~~~~L~~L~~-~g~~~~i~Sn~~ 101 (205)
T TIGR01454 74 VEVFPGVPELLAELRA-DGVGTAIATGKS 101 (205)
T ss_pred cccCCCHHHHHHHHHH-CCCeEEEEeCCc
Confidence 3566788887888776 589999999975
No 204
>cd08492 PBP2_NikA_DppA_OppA_like_15 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=38.47 E-value=1.7e+02 Score=27.57 Aligned_cols=93 Identities=23% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhc-CcccCCce--ecC---CcccCCh----HHHHhcCccE----EEEcCCC---cc
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKD-RHLALPHV--TVP---DIRYIDW----AELQRRGFKG----VVFDKDN---TL 194 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~-psLf~P~~--yV~---SI~dID~----e~Lk~~GIKg----VIfDlDN---TL 194 (257)
..+|+|+...||.+.|...+..-... ...+.|.. +.. .-+.-|+ +.|.+.|++. -+.+.|+ +|
T Consensus 267 ~~vR~Ai~~aidr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~~~~~g~~~~~g~~l~l 346 (484)
T cd08492 267 VRVRQALQLAIDREAIVETVFFGSYPAASSLLSSTTPYYKDLSDAYAYDPEKAKKLLDEAGWTARGADGIRTKDGKRLTL 346 (484)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCccccCCcCCCCCcccCcccccCCCCHHHHHHHHHHcCCCcCCCCceecCCCcEEEE
Confidence 57999999999999988633310000 11112211 111 1123344 5688999871 1224566 23
Q ss_pred cCCCC--CCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 195 TAPYS--LTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 195 t~p~s--~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
+-... ......+...+.+-.++.|++|-|.
T Consensus 347 ~~~~~~~~~~~~~~a~~i~~~l~~iGi~v~i~ 378 (484)
T cd08492 347 TFLYSTGQPQSQSVLQLIQAQLKEVGIDLQLK 378 (484)
T ss_pred EEecCCCCchHHHHHHHHHHHHHhhCeEEEEE
Confidence 22222 2234556677777777799986554
No 205
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=38.41 E-value=40 Score=28.41 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=9.6
Q ss_pred EEEcCCCcccC
Q 025153 186 VVFDKDNTLTA 196 (257)
Q Consensus 186 VIfDlDNTLt~ 196 (257)
|.+|+|+||+.
T Consensus 5 I~iDiDgVLad 15 (191)
T PF06941_consen 5 IAIDIDGVLAD 15 (191)
T ss_dssp EEEESBTTTB-
T ss_pred EEEECCCCCcc
Confidence 89999999994
No 206
>cd08500 PBP2_NikA_DppA_OppA_like_4 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=38.00 E-value=1.8e+02 Score=28.10 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=52.2
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHh--cCcccCCcee--cC----CcccCCh----HHHHhcCcc-----EEEEcCCC--
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAK--DRHLALPHVT--VP----DIRYIDW----AELQRRGFK-----GVVFDKDN-- 192 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r--~psLf~P~~y--V~----SI~dID~----e~Lk~~GIK-----gVIfDlDN-- 192 (257)
..+|+|+...||.++|...+..=.. ....+-|... -. ..+.-|+ +.|.+.|++ |+....||
T Consensus 264 ~~vRqAi~~aiDr~~i~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~d~e~Ak~lL~~aG~~~~~~dG~~~~~~G~~ 343 (499)
T cd08500 264 VRFRQALSLAINREEIIETVYFGLGEPQQGPVSPGSPYYYPEWELKYYEYDPDKANKLLDEAGLKKKDADGFRLDPDGKP 343 (499)
T ss_pred HHHHHHHHhhcCHHHHHHHHhcccceecCCCCCCCCcccCcccccccCCCCHHHHHHHHHHcCCcccCCCCcEECCCCcE
Confidence 5699999999999998753221000 1122333221 11 1223444 568899997 55666777
Q ss_pred -cccC--CCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 193 -TLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 193 -TLt~--p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
+|+- ........++.+.+.+-+++.|++|-|.
T Consensus 344 l~l~i~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~ 378 (499)
T cd08500 344 VEFTLITNAGNSIREDIAELIKDDWRKIGIKVNLQ 378 (499)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHhCCceEEE
Confidence 3332 2222234456666777667778875543
No 207
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=37.90 E-value=28 Score=26.92 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=21.8
Q ss_pred cccCCceecCCcccC-ChHHHHhcCccEEE
Q 025153 159 HLALPHVTVPDIRYI-DWAELQRRGFKGVV 187 (257)
Q Consensus 159 sLf~P~~yV~SI~dI-D~e~Lk~~GIKgVI 187 (257)
+-+.|.+|+.+.... |.+.|++.||+.||
T Consensus 3 ~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI 32 (139)
T cd00127 3 SEITPGLYLGSYPAASDKELLKKLGITHVL 32 (139)
T ss_pred CEEcCCeEECChhHhcCHHHHHHcCCCEEE
Confidence 456788888776655 78888888888876
No 208
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=37.28 E-value=1e+02 Score=26.30 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=36.2
Q ss_pred cCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 172 dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
.|||..||+.||+.+++=. + -+..-.+|....-+.++++ .|+++-++
T Consensus 14 ~id~~~vk~~gi~fviiKa----t-eG~~~~D~~~~~~~~~a~~-~Gl~vG~Y 60 (191)
T cd06413 14 DIDWARVRAQGVSFAYIKA----T-EGGDHVDKRFAENWRGARA-AGLPRGAY 60 (191)
T ss_pred CcCHHHHHhCCCcEEEEEE----c-CCCCccCHHHHHHHHHHHH-cCCceEEE
Confidence 6899999999999999875 2 3444577888887888776 68875444
No 209
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=37.21 E-value=39 Score=27.95 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=17.7
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+.|.+.+.+.++++ .|++++|+||+.
T Consensus 105 ~~~~g~~~~l~~L~~-~g~~~~i~Sn~~ 131 (203)
T TIGR02252 105 QVYPDAIKLLKDLRE-RGLILGVISNFD 131 (203)
T ss_pred eeCcCHHHHHHHHHH-CCCEEEEEeCCc
Confidence 345666666666655 477888888754
No 210
>cd08496 PBP2_NikA_DppA_OppA_like_9 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA can bind peptides of a wide range of lengths (2-35 amino-acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most
Probab=36.58 E-value=1.6e+02 Score=27.70 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=47.7
Q ss_pred HHHHHHHhhhcchHHHHHHHHH-H-HhcCcccCCcee--cCC---cccCCh----HHHHhcCcc-EEEEcCCCcccCCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVV-F-AKDRHLALPHVT--VPD---IRYIDW----AELQRRGFK-GVVFDKDNTLTAPYS 199 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~-l-~r~psLf~P~~y--V~S---I~dID~----e~Lk~~GIK-gVIfDlDNTLt~p~s 199 (257)
..+|+|+...||.++|...+.. . ......+-|... -+. -..-|+ +.|.+.|++ |+=+.+ ...
T Consensus 250 ~~vRkAl~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~g~~l~i------~~~ 323 (454)
T cd08496 250 PKVRQAINYAIDRKAFVDALLFGLGEPASQPFPPGSWAYDPSLENTYPYDPEKAKELLAEAGYPNGFSLTI------PTG 323 (454)
T ss_pred HHHHHHHHhhcCHHHHHHHHhcCCCccccCCCCCCCccccccccccCCCCHHHHHHHHHHcCCCCCceEEE------Eec
Confidence 4589999999999998863321 0 011123333221 111 123343 457889987 432222 122
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 200 LTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 200 ~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
.....++.+.+.+-.+..|++|-|.
T Consensus 324 ~~~~~~~a~~i~~~l~~iGi~v~~~ 348 (454)
T cd08496 324 AQNADTLAEIVQQQLAKVGIKVTIK 348 (454)
T ss_pred CCchhHHHHHHHHHHHHcCceEEEE
Confidence 2344556667777777789986543
No 211
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=36.50 E-value=29 Score=36.88 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=45.4
Q ss_pred HHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCCCCCchhHHHHHHH
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGNCLFTAYLLIWLL 245 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd~~~~~~~~iw~~ 245 (257)
+..++...|.+++|-|.|+++|.... ....+..+...-+-.|.|+|=......++.+..++=||++
T Consensus 496 ~~y~~s~~rli~ldyd~t~~~~~~~~----~~~~l~~L~~dp~n~v~i~s~~~r~~l~~~~~~~~~lgl~ 561 (732)
T KOG1050|consen 496 SDYKKSKKRLILLDYDLTLIPPRSIK----AISILKDLCSDPKNIVYIVSGRGRSVLEKWFFGCKNLGLA 561 (732)
T ss_pred hhhhhccceEEEecccccccCCCCch----HHHHHHHHhcCCCCeEEEEEccCchhhhhhccccccceee
Confidence 44578899999999999999888766 3333455444433458888876655555666666666654
No 212
>PLN02965 Probable pheophorbidase
Probab=36.36 E-value=1.3e+02 Score=25.60 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=29.4
Q ss_pred hHHHHhcCccEEEEcCCCc---ccCCCCCCCChhHHHHHHHHHHhcCC--cEEEEeCCCC
Q 025153 175 WAELQRRGFKGVVFDKDNT---LTAPYSLTLWGPLSSSIEQCKSVFGH--DIAVFSNSAG 229 (257)
Q Consensus 175 ~e~Lk~~GIKgVIfDlDNT---Lt~p~s~ei~Pel~~~w~e~k~~fGi--kV~IVSNNaG 229 (257)
.+.|.+.|++++.+|+=|- -.+.....-.+...+.+.++.+..|. ++++|-.|-|
T Consensus 23 ~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmG 82 (255)
T PLN02965 23 ATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLPPDHKVILVGHSIG 82 (255)
T ss_pred HHHHhhCCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcCCCCCEEEEecCcc
Confidence 3567788999999997221 11111111123444555555555543 5666666554
No 213
>PRK11587 putative phosphatase; Provisional
Probab=36.20 E-value=43 Score=28.44 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=21.4
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+-|.+.+.+..+++ .|++++||||+.
T Consensus 83 ~~~pg~~e~L~~L~~-~g~~~~ivTn~~ 109 (218)
T PRK11587 83 TALPGAIALLNHLNK-LGIPWAIVTSGS 109 (218)
T ss_pred eeCcCHHHHHHHHHH-cCCcEEEEcCCC
Confidence 456788887777766 599999999985
No 214
>PF08814 XisH: XisH protein; InterPro: IPR014919 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 2OKF_A.
Probab=35.85 E-value=18 Score=31.12 Aligned_cols=56 Identities=25% Similarity=0.319 Sum_probs=43.1
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhcCc----ccCCceecCCcccCChH--HHHhcCccEEEEcCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKDRH----LALPHVTVPDIRYIDWA--ELQRRGFKGVVFDKDN 192 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~ps----Lf~P~~yV~SI~dID~e--~Lk~~GIKgVIfDlDN 192 (257)
.|+..|+||.+|-..++. + .+|. +..|+..+.+++.-++- .+++..++-||+|-..
T Consensus 69 ~df~~AlGQ~~~Yr~~L~---~--~ePeR~LYLAV~~~iY~~fF~~~~~q~~i~~~qikLIVfd~~~ 130 (135)
T PF08814_consen 69 SDFHTALGQFLNYRLALE---R--TEPERKLYLAVPDDIYESFFQEPFIQLLIERYQIKLIVFDPEQ 130 (135)
T ss_dssp HHHHHHHHHHHHHHHHHH---H--H-TTEEEEEEEEHHHHHTGGGSHHHHHHHHHTT--EEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHh---h--cCCCceEEEEEcHHHHHHHHHhHHHHHHHHhcCceEEEECCCc
Confidence 689999999999988765 1 2343 56899999999999984 4588999999999753
No 215
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=35.81 E-value=26 Score=27.96 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.9
Q ss_pred HHHhcCccEEEEcCCC
Q 025153 177 ELQRRGFKGVVFDKDN 192 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDN 192 (257)
.|.+.|+|++++|.|-
T Consensus 23 ~l~~~g~~vllvD~D~ 38 (179)
T cd02036 23 ALAQLGYKVVLIDADL 38 (179)
T ss_pred HHHhCCCeEEEEeCCC
Confidence 5678999999999994
No 216
>PRK10671 copA copper exporting ATPase; Provisional
Probab=35.68 E-value=64 Score=33.90 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=39.3
Q ss_pred HHHHhcCccEEEEcCCCccc--CCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 176 AELQRRGFKGVVFDKDNTLT--APYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt--~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.+.+.|.+.+.+-.|++++ -.-.+.+-|++.+.+.++++ .|++++|+|+..
T Consensus 623 ~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~-~gi~v~~~Tgd~ 676 (834)
T PRK10671 623 TAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHK-AGYRLVMLTGDN 676 (834)
T ss_pred HHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHH-CCCeEEEEcCCC
Confidence 44567899999988898865 22455677778887877765 699999999865
No 217
>cd08499 PBP2_Ylib_like The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an uncharacterized ATP-binding cassette (ABC)-type peptide transport system YliB. Although the ligand specificity of Ylib protein is not known, it shares significant sequence similarity to the ABC-type dipeptide and oligopeptide binding proteins. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling
Probab=35.64 E-value=1.8e+02 Score=27.50 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=48.5
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHh--cCcccCCce--ecCCc--ccCCh----HHHHhcCcc-EEEEcCCCcccCCCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAK--DRHLALPHV--TVPDI--RYIDW----AELQRRGFK-GVVFDKDNTLTAPYSL 200 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r--~psLf~P~~--yV~SI--~dID~----e~Lk~~GIK-gVIfDlDNTLt~p~s~ 200 (257)
..+|+||...||.++|...+..=.. ...++.|.. +-... +.-|+ +.|.+.|++ ++-+ ||..+...
T Consensus 254 ~~vR~Ai~~aidr~~i~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~d~~~A~~lL~eaG~~~~~~l----~l~~~~~~ 329 (474)
T cd08499 254 VRVRQAINYAIDKEAIIKGILNGYGTPADSPIAPGVFGYSEQVGPYEYDPEKAKELLAEAGYPDGFET----TLWTNDNR 329 (474)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcCCceeccCCcCCCccCcCCCccCCCCCHHHHHHHHHHcCCCCCceE----EEEecCCC
Confidence 4699999999999998863321000 112233332 11121 12343 467889986 3222 33333332
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEE
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
....+.+.+.+-.++.|++|-|.
T Consensus 330 -~~~~~a~~i~~~l~~~GI~v~i~ 352 (474)
T cd08499 330 -ERIKIAEFIQQQLAQIGIDVEIE 352 (474)
T ss_pred -chhHHHHHHHHHHHHcCceEEEE
Confidence 33455666777777789986655
No 218
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=35.39 E-value=70 Score=29.49 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.0
Q ss_pred HHHhcCccEEEEcCC
Q 025153 177 ELQRRGFKGVVFDKD 191 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlD 191 (257)
.|.+.|.+++++|.|
T Consensus 26 ~l~~~g~~vl~iD~D 40 (241)
T PRK13886 26 YKASKGQKPLCIDTD 40 (241)
T ss_pred HHHhCCCCEEEEECC
Confidence 466788888888888
No 219
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=34.91 E-value=50 Score=27.97 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=21.2
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 200 ~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
..+.|.+.+.+..+++ .|++++|+||+.
T Consensus 91 ~~~~~g~~~~l~~l~~-~g~~~~i~S~~~ 118 (222)
T PRK10826 91 RPLLPGVREALALCKA-QGLKIGLASASP 118 (222)
T ss_pred CCCCCCHHHHHHHHHH-CCCeEEEEeCCc
Confidence 3466788877777665 689999999975
No 220
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=34.86 E-value=80 Score=25.64 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=29.3
Q ss_pred hcchHHHHHHHHHHHhcCcccCCceecCCcccC--ChHHHHhcCccEEEEcCCCc
Q 025153 141 RINVEGIVSSTVVFAKDRHLALPHVTVPDIRYI--DWAELQRRGFKGVVFDKDNT 193 (257)
Q Consensus 141 ~~N~~gI~~~~~~l~r~psLf~P~~yV~SI~dI--D~e~Lk~~GIKgVIfDlDNT 193 (257)
.+|++.|+. +.||+.+.+-..- ..+.|.+.|+.++++|-+.|
T Consensus 50 ~~n~E~l~~-----------l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~ 93 (195)
T cd01143 50 NPNVEKIVA-----------LKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASS 93 (195)
T ss_pred CCCHHHHhc-----------cCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCC
Confidence 579998776 2566665432211 35889999999999997764
No 221
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=34.78 E-value=51 Score=27.24 Aligned_cols=27 Identities=7% Similarity=0.303 Sum_probs=18.5
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+.|.+.+.+..+++ .|++++|+||+.
T Consensus 85 ~~~~g~~~~L~~l~~-~g~~~~i~S~~~ 111 (213)
T TIGR01449 85 SVFPGVEATLGALRA-KGLRLGLVTNKP 111 (213)
T ss_pred ccCCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 455667666666665 578888888864
No 222
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=34.59 E-value=64 Score=32.59 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=30.9
Q ss_pred ChHHHHhcCccEE-EEcCCCcccCCCCCCCChhHHHHHHHHHHh
Q 025153 174 DWAELQRRGFKGV-VFDKDNTLTAPYSLTLWGPLSSSIEQCKSV 216 (257)
Q Consensus 174 D~e~Lk~~GIKgV-IfDlDNTLt~p~s~ei~Pel~~~w~e~k~~ 216 (257)
-.+.|.+.|-|+| |.|.|++|..++ -++++....+.+.++.
T Consensus 252 aa~~L~e~GakVVavSD~~G~iy~~~--Gld~~~l~~l~~~k~~ 293 (454)
T PTZ00079 252 AVEKLLQLGAKVLTMSDSDGYIHEPN--GFTKEKLAYLMDLKNV 293 (454)
T ss_pred HHHHHHHCCCEEEEEEcCCCcEECCC--CCCHHHHHHHHHHHhh
Confidence 3578899999999 999999998654 4666655556666543
No 223
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=34.47 E-value=1.2e+02 Score=28.28 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=28.5
Q ss_pred hHHHHhcCccEE-EEcCCCcccCCCCCCCChhHHHHHHHHHHh
Q 025153 175 WAELQRRGFKGV-VFDKDNTLTAPYSLTLWGPLSSSIEQCKSV 216 (257)
Q Consensus 175 ~e~Lk~~GIKgV-IfDlDNTLt~p~s~ei~Pel~~~w~e~k~~ 216 (257)
.+.|.+.|.|+| |.|-++++..+. -++.+....+.+.++.
T Consensus 54 a~~L~e~GakvvaVsD~~G~i~~~~--Gld~~~l~~l~~~~~~ 94 (254)
T cd05313 54 AEKLLELGAKVVTLSDSKGYVYDPD--GFTGEKLAELKEIKEV 94 (254)
T ss_pred HHHHHHCCCEEEEEECCCceEECCC--CCCHHHHHHHHHHHHh
Confidence 467888999999 999999998544 4555554455555543
No 224
>cd08518 PBP2_NikA_DppA_OppA_like_19 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=34.39 E-value=1.9e+02 Score=27.36 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=49.4
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhcCc-ccCCce--ecCCc--ccCCh----HHHHhcCcc----EEEEcCCCc---c-
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKDRH-LALPHV--TVPDI--RYIDW----AELQRRGFK----GVVFDKDNT---L- 194 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~ps-Lf~P~~--yV~SI--~dID~----e~Lk~~GIK----gVIfDlDNT---L- 194 (257)
..+|+||...||.++|+..+..=...+. -+.|.. +-+.. +.-|+ +.|.+.|++ ++ .+.|+. |
T Consensus 251 ~~vR~Ai~~aiDr~~i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~d~~~Ak~lL~eaG~~~~~~g~-~~~~g~~l~l~ 329 (464)
T cd08518 251 PAIRKALNYAIDRQAIVDGVLNGYGTPAYSPPDGLPWGNPDAAIYDYDPEKAKKILEEAGWKDGDDGG-REKDGQKAEFT 329 (464)
T ss_pred HHHHHHHHhhcCHHHHHHHHhcCcceeecCCCCCCCCCCCCcccCCCCHHHHHHHHHHcCCCcCCCCe-eccCCcEEEEE
Confidence 4699999999999998864321000010 011211 11111 12344 457888985 33 455552 2
Q ss_pred -cCCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 195 -TAPYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 195 -t~p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
+.+........+.+.+.+-+++.|++|-|.
T Consensus 330 l~~~~~~~~~~~~a~~i~~~l~~iGi~v~i~ 360 (464)
T cd08518 330 LYYPSGDQVRQDLAVAVASQAKKLGIEVKLE 360 (464)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 222332233456667777777789986664
No 225
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=33.80 E-value=63 Score=32.17 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=46.9
Q ss_pred ccCChHHHHhcCccEEE-EcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCCCCCchhHHHHHH
Q 025153 171 RYIDWAELQRRGFKGVV-FDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGNCLFTAYLLIWL 244 (257)
Q Consensus 171 ~dID~e~Lk~~GIKgVI-fDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd~~~~~~~~iw~ 244 (257)
+.+|++.|+--+-.|.| +..- +-|-.+-++++-+..++.+.+..|+.++|=+-=+--.....|++++.+|-
T Consensus 167 Y~vDF~~l~i~e~~g~ic~SRP---tNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~ 238 (417)
T COG3977 167 YHVDFEHLHIGESTGAICVSRP---TNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWN 238 (417)
T ss_pred eccCHHHcccccccceEEecCC---CCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCC
Confidence 57788888765544444 3221 12333346666666799999989998776544444455899999999983
No 226
>PRK10985 putative hydrolase; Provisional
Probab=33.58 E-value=1.4e+02 Score=27.11 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=34.9
Q ss_pred HHHHhcCccEEEEcCCCcccCCCC------CCCChhHHHHHHHHHHhcCC-cEEEEeCCCCC
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYS------LTLWGPLSSSIEQCKSVFGH-DIAVFSNSAGN 230 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s------~ei~Pel~~~w~e~k~~fGi-kV~IVSNNaGs 230 (257)
+.|.++||++|++|.-+.=-.+.. ......+...+..+++.+|. ++++|--|-|.
T Consensus 81 ~~l~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~~vG~S~GG 142 (324)
T PRK10985 81 EAAQKRGWLGVVMHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQREFGHVPTAAVGYSLGG 142 (324)
T ss_pred HHHHHCCCEEEEEeCCCCCCCccCCcceECCCchHHHHHHHHHHHHhCCCCCEEEEEecchH
Confidence 568899999999999876322211 11234444445555555665 58888777765
No 227
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=33.54 E-value=55 Score=26.32 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=20.0
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+.|.+.+.+..+++ .|++++|+||+.
T Consensus 87 ~~~pg~~~~L~~L~~-~g~~~~i~s~~~ 113 (185)
T TIGR01990 87 DVLPGIKNLLDDLKK-NNIKIALASASK 113 (185)
T ss_pred ccCccHHHHHHHHHH-CCCeEEEEeCCc
Confidence 345777777777765 588999999853
No 228
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=33.50 E-value=50 Score=28.83 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=21.1
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+-|.+.+.+++.++..|.+++||||+.
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~ 121 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSP 121 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCc
Confidence 3467788877654444699999999987
No 229
>cd08514 PBP2_AppA_like The substrate-binding component of the oligopeptide-binding protein, AppA, from Bacillus subtilis contains the type 2 periplasmic-binding fold. This family represents the substrate-binding domain of the oligopeptide-binding protein, AppA, from Bacillus subtilis and its closest homologs from other bacteria and archaea. Bacillus subtilis has three ABC-type peptide transport systems, a dipeptide-binding protein (DppA) and two oligopeptide-binding proteins (OppA and AppA) with overlapping specificity. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and also is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains correspondin
Probab=33.45 E-value=2.6e+02 Score=26.35 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=52.7
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHh--cCcccCCce--ecCCc--ccCCh----HHHHhcCccE----EEEcCCCc----
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAK--DRHLALPHV--TVPDI--RYIDW----AELQRRGFKG----VVFDKDNT---- 193 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r--~psLf~P~~--yV~SI--~dID~----e~Lk~~GIKg----VIfDlDNT---- 193 (257)
..+|+|+...||.++|...+..=.. ....+.|.. +-+.+ +.-|+ +.|.+.|++. -+.+.|++
T Consensus 262 ~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ak~lL~eaG~~~~~~~~~~~~~G~~l~l 341 (483)
T cd08514 262 KRVRQAITYAIDREEIIDGLLLGLGEVANGPFSPGTWAYNPDLKPYPYDPDKAKELLAEAGWVDGDDDGILDKDGKPFSF 341 (483)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCcceeeccCCCCcccccCCCCCCCCCCHHHHHHHHHHcCCCcCCCCceecCCCCEEEE
Confidence 5699999999999998863321000 112333332 11222 22344 4578899873 23456664
Q ss_pred -ccCCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 194 -LTAPYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 194 -Lt~p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
|..+.......++.+.+.+-.+..|++|-|.
T Consensus 342 ~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~ 373 (483)
T cd08514 342 TLLTNQGNPVREQAATIIQQQLKEIGIDVKIR 373 (483)
T ss_pred EEEecCCCchHHHHHHHHHHHHHhcCcEEEEE
Confidence 2222222334566677888777899986654
No 230
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=33.22 E-value=1.4e+02 Score=24.93 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=25.7
Q ss_pred CCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 191 DNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 191 DNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
+.+++.--...-.+++.+..+.+++ .|.+++.++++.++.
T Consensus 76 ~D~vI~iS~sG~t~~~i~~~~~ak~-~g~~iI~IT~~~~s~ 115 (179)
T cd05005 76 GDLLIAISGSGETSSVVNAAEKAKK-AGAKVVLITSNPDSP 115 (179)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH-CCCeEEEEECCCCCc
Confidence 3333333333456788776666555 699999999887653
No 231
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=32.90 E-value=56 Score=26.92 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=10.3
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 203 WGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 203 ~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
.|.+.+.+..+++ .|++++|+|++
T Consensus 89 ~~~~~~~l~~l~~-~g~~v~ivS~s 112 (202)
T TIGR01490 89 YPEARDLIRWHKA-EGHTIVLVSAS 112 (202)
T ss_pred cHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 3444443443332 34455555544
No 232
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=32.80 E-value=61 Score=27.18 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=19.1
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNaG 229 (257)
.+.|.+.+.+..+++ .|++++||||+..
T Consensus 87 ~l~~G~~~~L~~L~~-~g~~~~ivT~~~~ 114 (220)
T TIGR03351 87 VALPGAEEAFRSLRS-SGIKVALTTGFDR 114 (220)
T ss_pred ccCCCHHHHHHHHHH-CCCEEEEEeCCch
Confidence 456677776666665 4778888887763
No 233
>PRK08238 hypothetical protein; Validated
Probab=32.52 E-value=28 Score=34.78 Aligned_cols=20 Identities=30% Similarity=0.209 Sum_probs=14.3
Q ss_pred cEEEEcCCCcccCCCCCCCChh
Q 025153 184 KGVVFDKDNTLTAPYSLTLWGP 205 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s~ei~Pe 205 (257)
+-+++|+|+||+ +.+...+-
T Consensus 11 ~pl~~DlDgTLi--~td~l~e~ 30 (479)
T PRK08238 11 LPLVVDLDGTLI--RTDLLHES 30 (479)
T ss_pred CCEEEeCCCCcc--ccchHHHH
Confidence 479999999999 44444433
No 234
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=32.30 E-value=55 Score=29.19 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=21.4
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+.|.+.+.+.++++ .|++++|+||+.
T Consensus 95 ~lypgv~e~L~~Lk~-~G~~l~I~Sn~s 121 (220)
T TIGR01691 95 HLYPDVPPALEAWLQ-LGLRLAVYSSGS 121 (220)
T ss_pred CcCcCHHHHHHHHHH-CCCEEEEEeCCC
Confidence 455777777777776 699999999985
No 235
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=32.14 E-value=24 Score=36.38 Aligned_cols=19 Identities=42% Similarity=0.310 Sum_probs=16.4
Q ss_pred HhcCccEEEEcCCCcccCC
Q 025153 179 QRRGFKGVVFDKDNTLTAP 197 (257)
Q Consensus 179 k~~GIKgVIfDlDNTLt~p 197 (257)
.+...+.||+|+|+|||.-
T Consensus 371 wr~n~kiVVsDiDGTITkS 389 (580)
T COG5083 371 WRNNKKIVVSDIDGTITKS 389 (580)
T ss_pred EeCCCcEEEEecCCcEEeh
Confidence 4688899999999999953
No 236
>cd08490 PBP2_NikA_DppA_OppA_like_3 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=31.96 E-value=2.2e+02 Score=26.63 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=48.9
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHH--hcCcccCCce-ecCCc--ccCCh----HHHHhcCccE----EEEcCCCc---c-
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFA--KDRHLALPHV-TVPDI--RYIDW----AELQRRGFKG----VVFDKDNT---L- 194 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~--r~psLf~P~~-yV~SI--~dID~----e~Lk~~GIKg----VIfDlDNT---L- 194 (257)
..+|+||...||.++|...+..=. ....++-|.. +.+++ +.-|+ +.|++.|++. ++ +.||+ |
T Consensus 246 ~~vR~Ai~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~~~~~~~-~~~G~~~~l~ 324 (470)
T cd08490 246 VRVRQALSLAIDREGIADSVLEGSAAPAKGPFPPSLPANPKLEPYEYDPEKAKELLAEAGWTDGDGDGI-EKDGEPLELT 324 (470)
T ss_pred HHHHHHHHhhcCHHHHHHHHhcCcceeccCCCCCCCCCCcccCCCCCCHHHHHHHHHHcCCCCCCCccc-ccCCceEEEE
Confidence 469999999999999876332100 0112222221 11111 12233 3578889863 23 55653 2
Q ss_pred -cCCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 195 -TAPYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 195 -t~p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
+..........+.+.+.+.+++.|++|-+.
T Consensus 325 l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~ 355 (470)
T cd08490 325 LLTYTSRPELPPIAEAIQAQLKKIGIDVEIR 355 (470)
T ss_pred EEecCCCCchHHHHHHHHHHHHHcCceEEEE
Confidence 222222334455666777777789976543
No 237
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=31.93 E-value=68 Score=25.80 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=14.3
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNN 227 (257)
.+.|.+.+.+..+++ .|++++|+||+
T Consensus 88 ~~~~g~~~~l~~l~~-~g~~i~i~S~~ 113 (185)
T TIGR02009 88 EVLPGIENFLKRLKK-KGIAVGLGSSS 113 (185)
T ss_pred CCCcCHHHHHHHHHH-cCCeEEEEeCc
Confidence 344555555555544 36666666665
No 238
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.89 E-value=1.3e+02 Score=25.98 Aligned_cols=45 Identities=24% Similarity=0.216 Sum_probs=32.6
Q ss_pred cCccEEEEcCCCc-------ccCCCCCCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 181 RGFKGVVFDKDNT-------LTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 181 ~GIKgVIfDlDNT-------Lt~p~s~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
.|+|+++=|+-|- --.-|+-.++||+...+.+..+.-|..++|.-
T Consensus 51 ~g~~~v~DDitnP~~~iY~~A~lIYSiRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 51 EGLRFVVDDITNPNISIYEGADLIYSIRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred ccceEEEccCCCccHHHhhCccceeecCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 5666666666554 11126777899999999999888898888763
No 239
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.78 E-value=1.1e+02 Score=27.74 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=29.2
Q ss_pred hcchHHHHHHHHHHHhcCcccCCceecCCcccC-------ChHHHHhcCccEEEEcCCC
Q 025153 141 RINVEGIVSSTVVFAKDRHLALPHVTVPDIRYI-------DWAELQRRGFKGVVFDKDN 192 (257)
Q Consensus 141 ~~N~~gI~~~~~~l~r~psLf~P~~yV~SI~dI-------D~e~Lk~~GIKgVIfDlDN 192 (257)
.+|++.|.. +.||+.+.+.... ..+.|++.||.+++++.++
T Consensus 81 ~~n~E~l~~-----------l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~ 128 (342)
T cd01139 81 DFSVEKVLT-----------LKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQ 128 (342)
T ss_pred CcCHHHHhh-----------cCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCC
Confidence 468887765 4677777654332 2477999999999998754
No 240
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=31.63 E-value=32 Score=30.22 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=13.9
Q ss_pred HHHhcCccEEEEcCCC
Q 025153 177 ELQRRGFKGVVFDKDN 192 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDN 192 (257)
.|.+.|+|++++|+|=
T Consensus 23 ~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 23 AFAKLGKRVLQIGCDP 38 (268)
T ss_pred HHHhCCCeEEEEecCc
Confidence 4778999999999994
No 241
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=31.60 E-value=30 Score=30.77 Aligned_cols=16 Identities=38% Similarity=0.353 Sum_probs=14.0
Q ss_pred HHHHhcCccEEEEcCC
Q 025153 176 AELQRRGFKGVVFDKD 191 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlD 191 (257)
..|.++|.|++++|.|
T Consensus 23 ~~La~~G~rVLliD~D 38 (279)
T PRK13230 23 AALAESGKKVLVVGCD 38 (279)
T ss_pred HHHHhCCCEEEEEeeC
Confidence 3577899999999999
No 242
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=31.60 E-value=70 Score=25.90 Aligned_cols=28 Identities=29% Similarity=0.289 Sum_probs=15.3
Q ss_pred CCceecCC-cccCChHHHHhcCccEEEEc
Q 025153 162 LPHVTVPD-IRYIDWAELQRRGFKGVVFD 189 (257)
Q Consensus 162 ~P~~yV~S-I~dID~e~Lk~~GIKgVIfD 189 (257)
-++++|.. +..=|++.|++.|||.||-=
T Consensus 6 ~~~~~vs~Q~~~~d~~~la~~GfktVInl 34 (110)
T PF04273_consen 6 SDDLSVSGQPSPEDLAQLAAQGFKTVINL 34 (110)
T ss_dssp ETTEEEECS--HHHHHHHHHCT--EEEE-
T ss_pred CCCeEECCCCCHHHHHHHHHCCCcEEEEC
Confidence 34555544 33445677889999999853
No 243
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=31.33 E-value=1e+02 Score=31.11 Aligned_cols=47 Identities=23% Similarity=0.221 Sum_probs=39.1
Q ss_pred cCccEEEEcCCCcccCCCCCC-CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 181 RGFKGVVFDKDNTLTAPYSLT-LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 181 ~GIKgVIfDlDNTLt~p~s~e-i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.|.+-|-||=|-||-+-+..- .+.+++..+.++++ .|++|.||.=..
T Consensus 145 ~~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~-~gv~VgIVTAAG 192 (408)
T PF06437_consen 145 YGLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLR-RGVKVGIVTAAG 192 (408)
T ss_pred CCceEEEEcCCcccccCCCCCCCCchHHHHHHHHHh-cCCeEEEEeCCC
Confidence 389999999999999766554 57788888999998 599999998544
No 244
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=31.33 E-value=29 Score=34.91 Aligned_cols=27 Identities=22% Similarity=0.060 Sum_probs=18.1
Q ss_pred cCCcccCChHHHHhcCccEEEEcCCCcccC
Q 025153 167 VPDIRYIDWAELQRRGFKGVVFDKDNTLTA 196 (257)
Q Consensus 167 V~SI~dID~e~Lk~~GIKgVIfDlDNTLt~ 196 (257)
++.|...+-+.+ .-+.++||+|+||+.
T Consensus 9 ~~~~~~~~~~~~---~~~~~~FDfDGTLt~ 35 (497)
T PLN02177 9 FEPISKCSSEGR---SNQTVAADLDGTLLI 35 (497)
T ss_pred CCccccCCcccc---cccEEEEecCCcccC
Confidence 444555555433 345799999999995
No 245
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=31.25 E-value=68 Score=26.68 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 200 ~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
..+.|.+.+.+..+++ .|++++|+||+.
T Consensus 92 ~~~~~g~~~~l~~l~~-~g~~~~i~S~~~ 119 (226)
T PRK13222 92 SRLYPGVKETLAALKA-AGYPLAVVTNKP 119 (226)
T ss_pred CccCCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 4566788877777765 588999999886
No 246
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=31.07 E-value=59 Score=27.79 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=17.6
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+.|.+.+.+..+++ .|++++||||+.
T Consensus 74 ~l~pG~~e~l~~l~~-~g~~~~IvS~~~ 100 (219)
T PRK09552 74 EIREGFHEFVQFVKE-NNIPFYVVSGGM 100 (219)
T ss_pred CcCcCHHHHHHHHHH-cCCeEEEECCCc
Confidence 455666665555554 677888888774
No 247
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=30.76 E-value=44 Score=33.03 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=26.4
Q ss_pred hHHHHhcCccEE-EEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcE
Q 025153 175 WAELQRRGFKGV-VFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDI 221 (257)
Q Consensus 175 ~e~Lk~~GIKgV-IfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV 221 (257)
++.|.++|++.| |...|| |+. .++|.+..+..+....++.+|
T Consensus 184 Ld~l~~~G~eyifv~nvDN-L~a----~~Dp~~lG~~~~~~~~~~~ev 226 (420)
T PF01704_consen 184 LDKLLARGIEYIFVSNVDN-LGA----VVDPVFLGYMIEKNADFGMEV 226 (420)
T ss_dssp HHHHHHTT--EEEEEETTB-TT-----TT-HHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHcCCeEEEEEecCC-ccc----ccCHHHHHHHHhccchhheee
Confidence 478999999987 578999 884 566888876666444443333
No 248
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=30.63 E-value=87 Score=27.28 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=31.4
Q ss_pred HHhcCccEEEEcCCCcccCC-CCCCCCh----hHHHHHHHHHHhcCCcEEEEeCCCCC
Q 025153 178 LQRRGFKGVVFDKDNTLTAP-YSLTLWG----PLSSSIEQCKSVFGHDIAVFSNSAGN 230 (257)
Q Consensus 178 Lk~~GIKgVIfDlDNTLt~p-~s~ei~P----el~~~w~e~k~~fGikV~IVSNNaGs 230 (257)
++..+.+.||+| +++.- ...+.++ .+...+.++.+..|..|++++-....
T Consensus 107 ~~~~~~~lvviD---pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 107 LLIRRIDLVVID---PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred HHhcCCCEEEEC---ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 345799999999 55432 1122222 34455666666778999999876543
No 249
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=30.62 E-value=1.2e+02 Score=25.98 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=37.6
Q ss_pred cccCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc--EEEEeC
Q 025153 170 IRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD--IAVFSN 226 (257)
Q Consensus 170 I~dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik--V~IVSN 226 (257)
|...||+.+++.|++.+++=. + -+..-.+|....-|.++++ .|++ +...+-
T Consensus 13 i~~~dw~~vk~~Gi~faiika----t-eG~~~~D~~~~~n~~~A~~-aGl~vG~Yhf~~ 65 (192)
T cd06522 13 MSVADYNKLKNYGVKAVIVKL----T-EGTTYRNPYAASQIANAKA-AGLKVSAYHYAH 65 (192)
T ss_pred ccHHHHHHHHHcCCCEEEEEE----c-CCCCccChHHHHHHHHHHH-CCCeeEEEEEEe
Confidence 334489999999999999875 2 3444577888888888886 6886 455554
No 250
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=30.44 E-value=1.2e+02 Score=27.15 Aligned_cols=50 Identities=22% Similarity=0.154 Sum_probs=38.4
Q ss_pred HHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc-EEEEeCC
Q 025153 177 ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD-IAVFSNS 227 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik-V~IVSNN 227 (257)
...-.|.|+|+|-+=+..||.=+..--|.+.+...++++ .|.+ |++||=|
T Consensus 32 ~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~-kGVD~I~cVSVN 82 (165)
T COG0678 32 DDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKA-KGVDEIYCVSVN 82 (165)
T ss_pred HHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHH-cCCceEEEEEeC
Confidence 345689999999999999987777667788776777764 6884 8888743
No 251
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=30.32 E-value=69 Score=25.66 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=14.4
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.|.+.+.+..+++ .|++++|+||+.
T Consensus 73 l~~g~~~ll~~l~~-~g~~~~i~S~~~ 98 (188)
T TIGR01489 73 IDPGFKEFIAFIKE-HGIDFIVISDGN 98 (188)
T ss_pred CCccHHHHHHHHHH-cCCcEEEEeCCc
Confidence 34445554555443 466677777663
No 252
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.07 E-value=1.5e+02 Score=26.09 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=32.8
Q ss_pred HHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
+.+++.||++|=++.+..-.........++..+.+.+.+++.|++|.-+.
T Consensus 28 ~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~ 77 (283)
T PRK13209 28 AIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMC 77 (283)
T ss_pred HHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEe
Confidence 55689999999998654211111122345656678888888999986654
No 253
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=29.71 E-value=49 Score=31.00 Aligned_cols=59 Identities=10% Similarity=-0.033 Sum_probs=31.8
Q ss_pred CCcccCChHHHHhcCccEEE-EcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 168 PDIRYIDWAELQRRGFKGVV-FDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 168 ~SI~dID~e~Lk~~GIKgVI-fDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
+...+=|++.+++.|+..|- ..+.-....|......=+..+...+..++.|++|+|..-
T Consensus 9 ~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEec
Confidence 34444566777777777775 366655555666565545445555555566777666554
No 254
>PHA02518 ParA-like protein; Provisional
Probab=29.61 E-value=38 Score=27.98 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=15.8
Q ss_pred HHHhcCccEEEEcCC--CcccCC
Q 025153 177 ELQRRGFKGVVFDKD--NTLTAP 197 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlD--NTLt~p 197 (257)
.|.+.|.|++++|.| ++++.|
T Consensus 24 ~la~~g~~vlliD~D~q~~~~~~ 46 (211)
T PHA02518 24 WLHADGHKVLLVDLDPQGSSTDW 46 (211)
T ss_pred HHHhCCCeEEEEeCCCCCChHHH
Confidence 467889999999999 334444
No 255
>TIGR02097 yccV hemimethylated DNA binding domain. This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.
Probab=29.61 E-value=26 Score=28.55 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=28.3
Q ss_pred HhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHh------cCCcEEEEeCCCCC
Q 025153 179 QRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSV------FGHDIAVFSNSAGN 230 (257)
Q Consensus 179 k~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~------fGikV~IVSNNaGs 230 (257)
|..|++|||+|.|=....+. +||.++-.. ..+--+++-|..+.
T Consensus 13 r~~~yrGVI~gwDp~~~~~e---------eW~~~~~~~~~p~~~qPfYhvLv~~~~~~ 61 (101)
T TIGR02097 13 KLFGYRGVVIDVDPEYSNTE---------EWLDAIPVEIRPLRDQPFYHVLAEDDEGL 61 (101)
T ss_pred cccCCCEEEEeEChhccCCh---------HHHHhhhcccCcccCCCceEEEEeCCCCc
Confidence 56899999999998877421 355554432 34556777775544
No 256
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=29.57 E-value=26 Score=27.82 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=15.4
Q ss_pred cccccCCCCcccccccCCC
Q 025153 5 SVSAALPSSSCHYCYPVPN 23 (257)
Q Consensus 5 ~~~a~~~~~~c~~~~~ip~ 23 (257)
-+|||.++.+|.-||||..
T Consensus 15 VaAaq~~~gscs~C~~ls~ 33 (79)
T PF07213_consen 15 VAAAQTQPGSCSGCYPLSP 33 (79)
T ss_pred HhhhcCCCCCCCCccccCH
Confidence 3567888889999999974
No 257
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=29.43 E-value=1.2e+02 Score=29.10 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=35.3
Q ss_pred CCceecCCcccCCh--------HHHHhcCccEEEEcCCCcccCCCCCC----C-ChhHHHHHHHH----HHhcCCcEEEE
Q 025153 162 LPHVTVPDIRYIDW--------AELQRRGFKGVVFDKDNTLTAPYSLT----L-WGPLSSSIEQC----KSVFGHDIAVF 224 (257)
Q Consensus 162 ~P~~yV~SI~dID~--------e~Lk~~GIKgVIfDlDNTLt~p~s~e----i-~Pel~~~w~e~----k~~fGikV~IV 224 (257)
.|..++-++.+-.| +.|.++|++||.+|-=..-..+.... . ....++...++ ++. +..++||
T Consensus 132 W~g~~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~-~P~~~II 210 (315)
T TIGR01370 132 WPGNYDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQ-NPQFVII 210 (315)
T ss_pred CCCceeEecccHHHHHHHHHHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 44555555555443 34568999999998533322121111 1 12334445454 443 4567888
Q ss_pred eCCC
Q 025153 225 SNSA 228 (257)
Q Consensus 225 SNNa 228 (257)
-||.
T Consensus 211 ~NnG 214 (315)
T TIGR01370 211 PQNG 214 (315)
T ss_pred ecCc
Confidence 7776
No 258
>PRK11590 hypothetical protein; Provisional
Probab=28.99 E-value=71 Score=27.35 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=20.4
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+-|.+.+.+++.++..|.+++||||+.
T Consensus 96 ~~pga~e~L~~~l~~~G~~l~IvSas~ 122 (211)
T PRK11590 96 AFPVVQERLTTYLLSSDADVWLITGSP 122 (211)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEeCCc
Confidence 356777777555555689999999987
No 259
>PRK10671 copA copper exporting ATPase; Provisional
Probab=28.90 E-value=45 Score=35.01 Aligned_cols=26 Identities=38% Similarity=0.397 Sum_probs=18.1
Q ss_pred hHHHHh-cCccEEEEcCCCcccCCCCCC
Q 025153 175 WAELQR-RGFKGVVFDKDNTLTAPYSLT 201 (257)
Q Consensus 175 ~e~Lk~-~GIKgVIfDlDNTLt~p~s~e 201 (257)
.+.|.. ..++.|+|||+||||. +..+
T Consensus 508 ~~~le~l~~v~~v~fDKTGTLT~-g~~~ 534 (834)
T PRK10671 508 ADALQRASTLDTLVFDKTGTLTE-GKPQ 534 (834)
T ss_pred HHHHHhhcCCCEEEEcCCCcccc-CceE
Confidence 333433 4589999999999994 4443
No 260
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=28.83 E-value=73 Score=23.56 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=31.3
Q ss_pred cccCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 170 IRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 170 I~dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
+..++.+.++++++=-+-.| ||+|+..=.+....+..+.+..+....++++++.
T Consensus 37 ~~~l~~~~~~~~~~lPl~~~-~~~l~va~~dP~~~~~~~~l~~~~~~~~i~~~la 90 (109)
T PF05157_consen 37 LDRLPLEFARRNRVLPLRQD-DGTLVVAVADPLDPEALDELEFLLGKYPIEFVLA 90 (109)
T ss_dssp --G--HHHHHHHTEEEEEEC-TTCEEEEES-TT-HHHHHHHHHHH-S--EEEEE-
T ss_pred HHhhHHHHHHHcCEEEEEEE-CCEEEEEEcCCCCHHHHHHHHHHcCCCCeEEEEe
Confidence 44499999999888776656 7887766665666677776666655335555554
No 261
>PRK10037 cell division protein; Provisional
Probab=28.39 E-value=39 Score=29.62 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=14.6
Q ss_pred HHHhcCccEEEEcCCCc
Q 025153 177 ELQRRGFKGVVFDKDNT 193 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDNT 193 (257)
.|.+.|.|++++|.|.-
T Consensus 25 ~La~~G~rVLlID~D~q 41 (250)
T PRK10037 25 SLQMLGENVLVIDACPD 41 (250)
T ss_pred HHHhcCCcEEEEeCChh
Confidence 57789999999999953
No 262
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=28.34 E-value=31 Score=34.74 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=41.1
Q ss_pred HHHHHhcCcccCCceecCCcccCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc--EEEEeCCC
Q 025153 151 TVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD--IAVFSNSA 228 (257)
Q Consensus 151 ~~~l~r~psLf~P~~yV~SI~dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik--V~IVSNNa 228 (257)
++.++.+.....++ -+=+.+.|+++|||+|.+|+.++ .+.+.+.-.....-..+.....|+. +++.-+..
T Consensus 182 a~~lL~net~~~~~------i~~ii~~l~~~Gyrgv~iDfE~v--~~~DR~~yt~flR~~r~~l~~~G~~~siAvaakt~ 253 (423)
T COG3858 182 AQLLLNNETAKNRL------INNIITLLDARGYRGVNIDFENV--GPGDRELYTDFLRQVRDALHSGGYTVSIAVAAKTS 253 (423)
T ss_pred HHHHHhcHHHHHHH------HHHHHHHHHhcCcccEEechhhC--CHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCC
Confidence 44455544443332 23346889999999999999985 2444443333333344444444664 55555554
Q ss_pred CCC
Q 025153 229 GNL 231 (257)
Q Consensus 229 Gs~ 231 (257)
+.+
T Consensus 254 ~~~ 256 (423)
T COG3858 254 DLQ 256 (423)
T ss_pred CCc
Confidence 444
No 263
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=28.22 E-value=1.2e+02 Score=22.21 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.0
Q ss_pred HHHHhcCccEEEEcCCCccc
Q 025153 176 AELQRRGFKGVVFDKDNTLT 195 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt 195 (257)
+.|++.||++.+-|.+.++.
T Consensus 23 ~~L~~~gi~v~~d~~~~~~~ 42 (94)
T PF03129_consen 23 NKLRKAGIRVELDDSDKSLG 42 (94)
T ss_dssp HHHHHTTSEEEEESSSSTHH
T ss_pred HHHHHCCCEEEEECCCCchh
Confidence 56899999999998887776
No 264
>cd08509 PBP2_TmCBP_oligosaccharides_like The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of a cellulose-binding protein from the hyperthermophilic bacterium Thermotoga maritima (TmCBP) and its closest related proteins. TmCBP binds a variety of lengths of beta-1,4-linked glucose oligomers, ranging from two sugar rings (cellobiose) to five (cellopentose). TmCBP is structurally homologous to domains I and III of the ATP-binding cassette (ABC)-type oligopeptide-binding proteins and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporters and chemotaxis systems. Members of the PBP2 superfamily function in uptake of a variety of metabolites in bacteria such as amino acids, carbohydrate, ions, and polyamines. L
Probab=28.17 E-value=2.5e+02 Score=27.02 Aligned_cols=94 Identities=24% Similarity=0.234 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHhcCc-cc--------CCceec---CC----cccCCh----HHHHhcCcc----EE
Q 025153 131 WSQLKAALGQRINVEGIVSSTVVFAKDRH-LA--------LPHVTV---PD----IRYIDW----AELQRRGFK----GV 186 (257)
Q Consensus 131 ~~~~~~~~gQ~~N~~gI~~~~~~l~r~ps-Lf--------~P~~yV---~S----I~dID~----e~Lk~~GIK----gV 186 (257)
-..+|+|+...||.++|...+..=...+. -+ .|.... .. ...-|+ +.|.+.|++ |+
T Consensus 264 d~~vR~Ai~~aIdr~~i~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~~~~G~ 343 (509)
T cd08509 264 DPEVRKALALAIDRTAIVKIAGYGYATPAPLPGPPYKVPLDPSGIAKYFGSFGLGWYKYDPDKAKKLLESAGFKKDKDGK 343 (509)
T ss_pred CHHHHHHHHHhcCHHHHHHHHhcCcccCCcCCCcccccccCcchhhhcchhhhcccccCCHHHHHHHHHHcCCeECCCCe
Confidence 36799999999999998863321001111 11 343210 10 111233 457889986 34
Q ss_pred EEcCCC---cccC--CCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 187 VFDKDN---TLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 187 IfDlDN---TLt~--p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
.-+.|+ +|+- .........+.+.+.+.++..|++|-|.
T Consensus 344 ~~~~~g~~l~l~l~~~~~~~~~~~~a~~lq~~l~~iGi~v~i~ 386 (509)
T cd08509 344 WYTPDGTPLKFTIIVPSGWTDWMAAAQIIAEQLKEFGIDVTVK 386 (509)
T ss_pred EECCCCceEEEEEEccCCchHHHHHHHHHHHHHHhcCeEEEEe
Confidence 445556 3332 2222223456677777777789987664
No 265
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=27.90 E-value=41 Score=29.58 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=13.7
Q ss_pred HHHhcCccEEEEcCC
Q 025153 177 ELQRRGFKGVVFDKD 191 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlD 191 (257)
.|.++|+|++++|.|
T Consensus 23 ~la~~G~rvlliD~D 37 (267)
T cd02032 23 ALAKRGKKVLQIGCD 37 (267)
T ss_pred HHHHCCCcEEEEecC
Confidence 577899999999999
No 266
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=27.76 E-value=40 Score=29.89 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=14.3
Q ss_pred HHHhcCccEEEEcCCCc
Q 025153 177 ELQRRGFKGVVFDKDNT 193 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDNT 193 (257)
.|.+.|.|++++|.|=-
T Consensus 24 ~La~~G~rVLlID~Dpq 40 (274)
T PRK13235 24 GLAEMGKKVMVVGCDPK 40 (274)
T ss_pred HHHHCCCcEEEEecCCc
Confidence 46788999999999943
No 267
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=27.42 E-value=40 Score=29.90 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.4
Q ss_pred HHHhcCccEEEEcCCCc
Q 025153 177 ELQRRGFKGVVFDKDNT 193 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDNT 193 (257)
.|.+.|.|++++|.|--
T Consensus 24 ~La~~G~rVllvD~Dpq 40 (273)
T PRK13232 24 ALSTMGNKILLVGCDPK 40 (273)
T ss_pred HHHhhCCCeEEEecccc
Confidence 56789999999999943
No 268
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=27.40 E-value=2.2e+02 Score=21.40 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=19.2
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEeCCCCC
Q 025153 203 WGPLSSSIEQCKSVFGHDIAVFSNSAGN 230 (257)
Q Consensus 203 ~Pel~~~w~e~k~~fGikV~IVSNNaGs 230 (257)
.+++++..+.+++ .|.++++++++..+
T Consensus 73 ~~~~~~~~~~a~~-~g~~iv~iT~~~~~ 99 (139)
T cd05013 73 TKETVEAAEIAKE-RGAKVIAITDSANS 99 (139)
T ss_pred CHHHHHHHHHHHH-cCCeEEEEcCCCCC
Confidence 3566665655554 69999999998754
No 269
>PLN02954 phosphoserine phosphatase
Probab=27.29 E-value=82 Score=26.48 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=15.1
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.|.+.+.+..+++ .|++++|+|++.
T Consensus 85 l~pg~~e~l~~l~~-~g~~~~IvS~~~ 110 (224)
T PLN02954 85 LSPGIPELVKKLRA-RGTDVYLVSGGF 110 (224)
T ss_pred CCccHHHHHHHHHH-CCCEEEEECCCc
Confidence 44555555555544 466777776654
No 270
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=27.22 E-value=1.7e+02 Score=25.11 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=37.3
Q ss_pred cCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc--EEEEeC
Q 025153 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD--IAVFSN 226 (257)
Q Consensus 172 dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik--V~IVSN 226 (257)
.|||+.+++.|++.+++=. + -+..-..|....-+.++++ .|+. +..++-
T Consensus 12 ~idw~~vk~~g~~fviiKa----t-eG~~~~D~~~~~n~~~A~~-aGl~~G~Yhf~~ 62 (199)
T cd06412 12 SVDWSGAAANGARFAYVKA----T-EGTSYTNPRFSSQYNGAYN-AGLIRGAYHFAL 62 (199)
T ss_pred CCCHHHHHhCCCeEEEEEE----e-cCCCccChhHHHHHHHHHH-cCCceEEEEEee
Confidence 6899999999999999875 2 3444577888888888876 6885 555553
No 271
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=27.00 E-value=1.3e+02 Score=28.35 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=38.4
Q ss_pred HHHHhcCccEEEEcCCCc--------ccCCCCC-----CC--ChhHHHHHHHHHHhcCCcEEEEeCCCCCCCCC
Q 025153 176 AELQRRGFKGVVFDKDNT--------LTAPYSL-----TL--WGPLSSSIEQCKSVFGHDIAVFSNSAGNLGNC 234 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNT--------Lt~p~s~-----ei--~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd~ 234 (257)
..|.++|.|+++.|+|-- |-.+++. ++ .+.+..-+++..+.+| .+=+|-|.+|-.+|-
T Consensus 32 ~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g-~psvlVncAGItrD~ 104 (256)
T KOG1200|consen 32 QLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLG-TPSVLVNCAGITRDG 104 (256)
T ss_pred HHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcC-CCcEEEEcCcccccc
Confidence 457899999999999954 2221111 11 2234455888888888 666777888887774
No 272
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=26.96 E-value=1.2e+02 Score=25.20 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=28.9
Q ss_pred hhcchHHHHHHHHHHHhcCcccCCceecCCccc---CChHHHHhcCccEEEEcCCCc
Q 025153 140 QRINVEGIVSSTVVFAKDRHLALPHVTVPDIRY---IDWAELQRRGFKGVVFDKDNT 193 (257)
Q Consensus 140 Q~~N~~gI~~~~~~l~r~psLf~P~~yV~SI~d---ID~e~Lk~~GIKgVIfDlDNT 193 (257)
..+|++.|.. +.||+.+..-.. =..+.+.+.|+.+++++-.+.
T Consensus 49 ~~~~~E~i~~-----------l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 49 SSPNLEAILA-----------LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp TSB-HHHHHH-----------T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred CCccHHHHHh-----------CCCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 3678888765 348888766555 224667899999999998875
No 273
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=26.92 E-value=1.4e+02 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHhcCcccCCceecCCccc-------CChHHHHhcCccEEEEc
Q 025153 142 INVEGIVSSTVVFAKDRHLALPHVTVPDIRY-------IDWAELQRRGFKGVVFD 189 (257)
Q Consensus 142 ~N~~gI~~~~~~l~r~psLf~P~~yV~SI~d-------ID~e~Lk~~GIKgVIfD 189 (257)
.|++.|.. +.||+.+.+... =+.+.|++.|+.+++++
T Consensus 70 ~n~E~I~~-----------l~PDlIi~~~~~~~~~~~~~~~~~L~~~gipv~~~~ 113 (284)
T cd01148 70 PSKETVLA-----------ARPDLVFGGWSYGFDKGGLGTPDSLAELGIKTYILP 113 (284)
T ss_pred CCHHHHhc-----------CCCCEEEEecccccCCCCCCCHHHHHHCCCeEEECc
Confidence 67776654 467777765322 13689999999999996
No 274
>PLN02535 glycolate oxidase
Probab=26.91 E-value=2.3e+02 Score=27.67 Aligned_cols=30 Identities=10% Similarity=-0.053 Sum_probs=21.3
Q ss_pred hcCCcEEEEeCCCCCCCCCCchhHHHHHHH
Q 025153 216 VFGHDIAVFSNSAGNLGNCLFTAYLLIWLL 245 (257)
Q Consensus 216 ~fGikV~IVSNNaGs~dd~~~~~~~~iw~~ 245 (257)
+.|.+.++|||..|-.-|...+....++-+
T Consensus 242 ~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev 271 (364)
T PLN02535 242 EVGVAGIIVSNHGARQLDYSPATISVLEEV 271 (364)
T ss_pred hcCCCEEEEeCCCcCCCCCChHHHHHHHHH
Confidence 468899999999987666655555555543
No 275
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=26.81 E-value=45 Score=28.90 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.1
Q ss_pred HHHHhcCccEEEEcCC
Q 025153 176 AELQRRGFKGVVFDKD 191 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlD 191 (257)
..|.+.|.|++++|.|
T Consensus 23 ~~La~~G~kVlliD~D 38 (270)
T cd02040 23 AALAEMGKKVMIVGCD 38 (270)
T ss_pred HHHHhCCCeEEEEEcC
Confidence 3567899999999999
No 276
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=26.77 E-value=74 Score=25.03 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHhcCCcEEEEeCCCCC
Q 025153 204 GPLSSSIEQCKSVFGHDIAVFSNSAGN 230 (257)
Q Consensus 204 Pel~~~w~e~k~~fGikV~IVSNNaGs 230 (257)
|.+.+.+..+++ .|++++|+||+...
T Consensus 67 ~g~~e~l~~L~~-~g~~~~i~T~~~~~ 92 (154)
T TIGR01549 67 RGAADLLKRLKE-AGIKLGIISNGSLR 92 (154)
T ss_pred cCHHHHHHHHHH-CcCeEEEEeCCchH
Confidence 567776777665 59999999999833
No 277
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=26.70 E-value=40 Score=32.05 Aligned_cols=66 Identities=21% Similarity=0.103 Sum_probs=39.7
Q ss_pred hcCcccCCceecCCcccCChHHHHhcCccEEEEcC--CCcccC-CC-CCCCChhHHHHHHHHHHhcCCcEE
Q 025153 156 KDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFDK--DNTLTA-PY-SLTLWGPLSSSIEQCKSVFGHDIA 222 (257)
Q Consensus 156 r~psLf~P~~yV~SI~dID~e~Lk~~GIKgVIfDl--DNTLt~-p~-s~ei~Pel~~~w~e~k~~fGikV~ 222 (257)
++..-|.=...|.=+.+=+.++|+..|+++|.+|+ ||+... -| -+.-.+.+...+.-++ ++|++|+
T Consensus 84 ke~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~-e~~irvv 153 (275)
T COG1856 84 KERTGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLK-ENGIRVV 153 (275)
T ss_pred HHhhCeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHH-HcCceec
Confidence 34433444445555557778999999999999998 887542 11 1122233334455444 5888754
No 278
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=26.70 E-value=42 Score=33.51 Aligned_cols=41 Identities=22% Similarity=0.067 Sum_probs=20.8
Q ss_pred hcCccEEEEcCCCcccCCCCCCCChhHH-HHHHHHHHhcCCc
Q 025153 180 RRGFKGVVFDKDNTLTAPYSLTLWGPLS-SSIEQCKSVFGHD 220 (257)
Q Consensus 180 ~~GIKgVIfDlDNTLt~p~s~ei~Pel~-~~w~e~k~~fGik 220 (257)
=..|+++-||.|.||+....++...-+- ..-+.+.++.|..
T Consensus 9 l~~i~~iGFDmDyTLa~Y~~~~~~~L~y~~~~~~LV~~~gYP 50 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYKSPELEELIYELARERLVEEKGYP 50 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-CCHHHHHHHHHHHHHHHHHTT--
T ss_pred cccCCEEEECcccchhhcCHHHHHHHHHHHHHHHHHhccCCC
Confidence 3579999999999999655544433222 2233444546663
No 279
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.64 E-value=1.7e+02 Score=25.88 Aligned_cols=50 Identities=16% Similarity=0.028 Sum_probs=32.4
Q ss_pred HHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
+..++.||++|=+..+..-..++.....++..+.+.+..++.|++|+-+.
T Consensus 23 ~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 72 (279)
T TIGR00542 23 QLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMC 72 (279)
T ss_pred HHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeee
Confidence 44589999999887665321112223345555667777888999987664
No 280
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=26.64 E-value=84 Score=26.39 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=19.3
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+-|.+.+.+..+++ .|++++|+||+.
T Consensus 83 ~~~g~~~~l~~L~~-~g~~~~i~S~~~ 108 (214)
T PRK13288 83 EYETVYETLKTLKK-QGYKLGIVTTKM 108 (214)
T ss_pred cCcCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 45677776777665 488899999886
No 281
>PLN02714 thiamin pyrophosphokinase
Probab=26.53 E-value=65 Score=28.98 Aligned_cols=35 Identities=31% Similarity=0.191 Sum_probs=28.5
Q ss_pred cccCCceecCCcccCChHHH---HhcCccEEEE--cCCCc
Q 025153 159 HLALPHVTVPDIRYIDWAEL---QRRGFKGVVF--DKDNT 193 (257)
Q Consensus 159 sLf~P~~yV~SI~dID~e~L---k~~GIKgVIf--DlDNT 193 (257)
.-+.|++.|.++.-|+.+.+ +++|.+.+.+ |+|-|
T Consensus 51 ~gi~Pd~iiGDfDSi~~e~~~~~~~~~~~i~~~~~eKD~T 90 (229)
T PLN02714 51 NRYKPDVIKGDMDSIRPEVLDFYSNLGTKIVDESHDQDTT 90 (229)
T ss_pred cCcCCCEEEeeccCCCHHHHHHHHHCCCEEEECCCCcccC
Confidence 46899999999999998654 5789988776 67766
No 282
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=26.43 E-value=4.4e+02 Score=25.56 Aligned_cols=29 Identities=17% Similarity=-0.065 Sum_probs=19.6
Q ss_pred HhcCCcEEEEeCCCCCCCCCCchhHHHHH
Q 025153 215 SVFGHDIAVFSNSAGNLGNCLFTAYLLIW 243 (257)
Q Consensus 215 ~~fGikV~IVSNNaGs~dd~~~~~~~~iw 243 (257)
.+.|.+.++|||-.|.+-|-.-+.+..+.
T Consensus 239 ~~~G~d~I~vsnhGGr~ld~~~~~~~~l~ 267 (351)
T cd04737 239 INAGADGIWVSNHGGRQLDGGPASFDSLP 267 (351)
T ss_pred HHcCCCEEEEeCCCCccCCCCchHHHHHH
Confidence 35688999999998876555444444443
No 283
>cd00995 PBP2_NikA_DppA_OppA_like The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is inv
Probab=26.40 E-value=3.6e+02 Score=24.87 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=49.1
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHh--cCcccCCce---ecCCc--ccCCh----HHHHhcCccE---EEEcCCCcccCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAK--DRHLALPHV---TVPDI--RYIDW----AELQRRGFKG---VVFDKDNTLTAP 197 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r--~psLf~P~~---yV~SI--~dID~----e~Lk~~GIKg---VIfDlDNTLt~p 197 (257)
..+|+||...||.++|...+..=.. ...++.|.. +-... ..-|+ +.|++.|++. +-+ ||+.+
T Consensus 255 ~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~kA~~lL~~ag~~~~~~~~l----~l~~~ 330 (466)
T cd00995 255 KRVRQAISYAIDREEIIDAVLGGYGTPATSPLPPGSWGYYDKDLEPYEYDPEKAKELLAEAGYKDGKGLEL----TLLYN 330 (466)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCcccccCCCCCcccccCCcccCCCCCCHHHHHHHHHHhCCCCCCceEE----EEEeC
Confidence 4689999999999998864321001 112222221 11111 22343 4578889863 222 23222
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 198 YSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 198 ~s~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
........+.+.+.+-+++.|++|=|..
T Consensus 331 ~~~~~~~~~a~~i~~~l~~~Gi~v~~~~ 358 (466)
T cd00995 331 SDGPTRKEIAEAIQAQLKEIGIKVEIEP 358 (466)
T ss_pred CCCCcHHHHHHHHHHHHHHcCceEEEEE
Confidence 2222345566777777777899865543
No 284
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=26.26 E-value=39 Score=30.10 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=19.4
Q ss_pred ccEEEEcCCCcccCCCC--CCCChhHHHHHHHHHH
Q 025153 183 FKGVVFDKDNTLTAPYS--LTLWGPLSSSIEQCKS 215 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s--~ei~Pel~~~w~e~k~ 215 (257)
||+|++|+.||.++-.- ..+-|-+++++.+.++
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~ 35 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVN 35 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHH
Confidence 68999999999875321 1233444444444443
No 285
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.17 E-value=3.7e+02 Score=24.09 Aligned_cols=52 Identities=12% Similarity=0.328 Sum_probs=31.8
Q ss_pred HHHHhhhcchHHHHHHHHHHHhcCcccCC-ce--ecCCcccC--C--hHHHHhcCccEEEE
Q 025153 135 KAALGQRINVEGIVSSTVVFAKDRHLALP-HV--TVPDIRYI--D--WAELQRRGFKGVVF 188 (257)
Q Consensus 135 ~~~~gQ~~N~~gI~~~~~~l~r~psLf~P-~~--yV~SI~dI--D--~e~Lk~~GIKgVIf 188 (257)
.+++.+-+|+.-....+..+ |+.. =.| ++ |.+-++.. + .+.+++.|+.||++
T Consensus 52 ~~al~~g~~~~~~~~~~~~v-r~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 52 ERALANGVTLKDVLELVKEI-RKKN-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred HHHHHcCCCHHHHHHHHHHH-hhcC-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEE
Confidence 46677777777777766654 4332 234 44 33444443 2 46678899998888
No 286
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=26.12 E-value=1.5e+02 Score=22.79 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 178 LQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 178 Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
..+.|..+|| |+|... ++....|.++.+.+|.++.+|
T Consensus 66 ~l~~g~~~vv---d~~~~~-------~~~r~~~~~~~~~~~~~~~~v 102 (143)
T PF13671_consen 66 ALRNGNSVVV---DNTNLS-------REERARLRELARKHGYPVRVV 102 (143)
T ss_dssp HHHTT-EEEE---ESS--S-------HHHHHHHHHHHHHCTEEEEEE
T ss_pred HHHcCCCcee---ccCcCC-------HHHHHHHHHHHHHcCCeEEEE
Confidence 3468888666 687653 345567878877788765444
No 287
>cd08511 PBP2_NikA_DppA_OppA_like_5 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is mos
Probab=26.02 E-value=3.4e+02 Score=25.52 Aligned_cols=89 Identities=19% Similarity=0.129 Sum_probs=48.1
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhc--CcccCCc--eecCC--cccCCh----HHHHhcCccEEEEcCCCcccCCCCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKD--RHLALPH--VTVPD--IRYIDW----AELQRRGFKGVVFDKDNTLTAPYSLT 201 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~--psLf~P~--~yV~S--I~dID~----e~Lk~~GIKgVIfDlDNTLt~p~s~e 201 (257)
..+|+|+...||.+.|...+..-... ...+-|. .+-++ ....|+ +.|.+.|++.+-+ +|+.+.. .
T Consensus 255 ~~vRkAi~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~~~l----~i~~~~~-~ 329 (467)
T cd08511 255 PRVRQALALAIDREAINQVVFNGTFKPANQPFPPGSPYYGKSLPVPGRDPAKAKALLAEAGVPTVTF----ELTTANT-P 329 (467)
T ss_pred HHHHHHHHhhcCHHHHHHHHhcCceeECccCCCCCCCCcCCCCCCCCCCHHHHHHHHHHcCCCCceE----EEEecCC-C
Confidence 46899999999999988633211011 1122221 11111 123344 5577889874222 2222222 2
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEe
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~IVS 225 (257)
...++.+.+.+-.+..|+++-|..
T Consensus 330 ~~~~~a~~i~~~l~~~Gi~v~i~~ 353 (467)
T cd08511 330 TGRQLAQVIQAMAAEAGFTVKLRP 353 (467)
T ss_pred chhHHHHHHHHHHHhcCcEeEEEE
Confidence 334566667777777899877653
No 288
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=25.96 E-value=2e+02 Score=25.10 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=6.9
Q ss_pred HHhcCccEEE
Q 025153 178 LQRRGFKGVV 187 (257)
Q Consensus 178 Lk~~GIKgVI 187 (257)
+++.|+++.+
T Consensus 54 ~~~~gl~ls~ 63 (273)
T smart00518 54 LKENNIDVSV 63 (273)
T ss_pred HHHcCCCEEE
Confidence 4568888655
No 289
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=25.79 E-value=1.2e+02 Score=25.85 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=34.4
Q ss_pred cCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc--EEEEe
Q 025153 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD--IAVFS 225 (257)
Q Consensus 172 dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik--V~IVS 225 (257)
.|||+.|++.|++.+++-. + -+....+|....-+..+++ .|++ ++..+
T Consensus 12 ~i~w~~vk~~g~~fv~ika----t-eg~~~~D~~f~~n~~~A~~-aGl~~G~Yhf~ 61 (196)
T cd06416 12 VSTFQCLKNNGYSFAIIRA----Y-RSNGSFDPNSVTNIKNARA-AGLSTDVYFFP 61 (196)
T ss_pred hhhhhHHHhCCceEEEEEE----E-ccCCccChHHHHHHHHHHH-cCCccceEEEe
Confidence 5899999999999999864 2 1233367777777888776 5775 55555
No 290
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=25.75 E-value=47 Score=29.32 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=13.7
Q ss_pred HHHhcCccEEEEcCC
Q 025153 177 ELQRRGFKGVVFDKD 191 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlD 191 (257)
.|.+.|+|++++|.|
T Consensus 23 ~La~~G~~VlliD~D 37 (275)
T TIGR01287 23 ALAEMGKKVMIVGCD 37 (275)
T ss_pred HHHHCCCeEEEEeCC
Confidence 577889999999999
No 291
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=25.56 E-value=81 Score=27.36 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=12.4
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 203 WGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 203 ~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
-|.+.+.+..+++ .|++++|+||+.
T Consensus 101 ~pg~~e~L~~L~~-~g~~l~IvT~~~ 125 (253)
T TIGR01422 101 IPGVIEVIAYLRA-RGIKIGSTTGYT 125 (253)
T ss_pred CCCHHHHHHHHHH-CCCeEEEECCCc
Confidence 3444444444443 355566665553
No 292
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=25.34 E-value=95 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=21.2
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 200 ~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
..+-|.+.+.+..+++ .|++++|+||+.
T Consensus 92 ~~~~~g~~e~L~~Lk~-~g~~~~i~Tn~~ 119 (224)
T PRK14988 92 AVLREDTVPFLEALKA-SGKRRILLTNAH 119 (224)
T ss_pred CCcCCCHHHHHHHHHh-CCCeEEEEeCcC
Confidence 3456777777777776 599999999975
No 293
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=25.28 E-value=1.5e+02 Score=27.38 Aligned_cols=30 Identities=7% Similarity=0.054 Sum_probs=13.3
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 198 YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 198 ~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+++.+.|++.+.++.+++ .|+.+.|++|..
T Consensus 62 GEPll~~~~~~ii~~~~~-~g~~~~l~TNG~ 91 (358)
T TIGR02109 62 GEPLARPDLVELVAHARR-LGLYTNLITSGV 91 (358)
T ss_pred ccccccccHHHHHHHHHH-cCCeEEEEeCCc
Confidence 344444444443333332 355555555543
No 294
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=25.25 E-value=40 Score=31.90 Aligned_cols=19 Identities=32% Similarity=0.160 Sum_probs=15.2
Q ss_pred ccEEEEcCCCcccCCCCCC
Q 025153 183 FKGVVFDKDNTLTAPYSLT 201 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~s~e 201 (257)
-..|+||+|+||+.-+++.
T Consensus 13 ril~~FDFD~TIid~dSD~ 31 (256)
T KOG3120|consen 13 RILLVFDFDRTIIDQDSDN 31 (256)
T ss_pred cEEEEEecCceeecCCcch
Confidence 4689999999999766643
No 295
>PLN02811 hydrolase
Probab=25.24 E-value=96 Score=26.45 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=21.8
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 200 ~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
..+.|.+.+.+..+++ .|+++.|+||+.
T Consensus 77 ~~l~~gv~e~l~~L~~-~g~~~~i~S~~~ 104 (220)
T PLN02811 77 SDLMPGAERLVRHLHA-KGIPIAIATGSH 104 (220)
T ss_pred CCCCccHHHHHHHHHH-CCCcEEEEeCCc
Confidence 3456788887777765 699999999875
No 296
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=25.22 E-value=91 Score=29.88 Aligned_cols=54 Identities=20% Similarity=0.003 Sum_probs=30.9
Q ss_pred ccEEEEcCCCcccCCC---------CCCCChhHHHHHH---------------HHHHhcCCcEEEEeCCCCCCCCCCch
Q 025153 183 FKGVVFDKDNTLTAPY---------SLTLWGPLSSSIE---------------QCKSVFGHDIAVFSNSAGNLGNCLFT 237 (257)
Q Consensus 183 IKgVIfDlDNTLt~p~---------s~ei~Pel~~~w~---------------e~k~~fGikV~IVSNNaGs~dd~~~~ 237 (257)
-++||+|+|=|+..-. ....+|+--..|. +-...-|..|+-+||-..+. ++++|
T Consensus 79 ~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~-~~~~T 156 (274)
T COG2503 79 KKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQEN-EKDGT 156 (274)
T ss_pred CceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhc-ccchh
Confidence 3499999999975311 1112233333332 23334589999999977433 35554
No 297
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=25.21 E-value=48 Score=29.12 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=13.5
Q ss_pred HHHhcCccEEEEcCC
Q 025153 177 ELQRRGFKGVVFDKD 191 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlD 191 (257)
.|.+.|.|++++|.|
T Consensus 25 ~la~~G~kVLliD~D 39 (270)
T PRK13185 25 AFAKLGKKVLQIGCD 39 (270)
T ss_pred HHHHCCCeEEEEecc
Confidence 467899999999999
No 298
>cd08493 PBP2_DppA_like The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their li
Probab=24.99 E-value=2.9e+02 Score=26.11 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=48.1
Q ss_pred HHHHHHHhhhcchHHHHHHHHH-HHhcCcccCCce---ecCCc--ccCCh----HHHHhcCccE-EEEcCCCcccCCCC-
Q 025153 132 SQLKAALGQRINVEGIVSSTVV-FAKDRHLALPHV---TVPDI--RYIDW----AELQRRGFKG-VVFDKDNTLTAPYS- 199 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~-l~r~psLf~P~~---yV~SI--~dID~----e~Lk~~GIKg-VIfDlDNTLt~p~s- 199 (257)
..+|+||...||..+|+..+.. .......+.|.. +-+.+ ..-|+ +.|.+.|++. +-+ ||.....
T Consensus 270 ~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~g~~l----~i~~~~~~ 345 (482)
T cd08493 270 PKVRQAIAHAINKEAIVDAVYQGTATVAKNPLPPTSWGYNDDVPDYEYDPEKAKALLAEAGYPDGFEL----TLWYPPVS 345 (482)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcCceeeccCccCCCccccCCCCccCCCCHHHHHHHHHHcCCCCCceE----EEEEeCCc
Confidence 5689999999999998764421 001111223321 11222 22333 4577888862 211 2222221
Q ss_pred ---CCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 200 ---LTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 200 ---~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
.....++.+.+.+..+++|++|-+..
T Consensus 346 ~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~ 374 (482)
T cd08493 346 RPYNPNPKKMAELIQADLAKVGIKVEIVT 374 (482)
T ss_pred ccCCCcHHHHHHHHHHHHHHhCCEEEEEE
Confidence 12345566677777777999866554
No 299
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.94 E-value=1.3e+02 Score=25.91 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 204 GPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 204 Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
+.+.+.+++..+.+| ++=++=||+|..
T Consensus 68 ~~v~~~~~~~~~~~g-~iD~lv~nAg~~ 94 (252)
T PRK06079 68 ESIERAFATIKERVG-KIDGIVHAIAYA 94 (252)
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEccccc
Confidence 345666777777776 344455667654
No 300
>cd08515 PBP2_NikA_DppA_OppA_like_10 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=24.81 E-value=3.3e+02 Score=25.68 Aligned_cols=91 Identities=18% Similarity=0.062 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHh--cCcccCCceec--C---CcccCCh----HHHHhcCc-cEEEEcCCCcccCCC
Q 025153 131 WSQLKAALGQRINVEGIVSSTVVFAK--DRHLALPHVTV--P---DIRYIDW----AELQRRGF-KGVVFDKDNTLTAPY 198 (257)
Q Consensus 131 ~~~~~~~~gQ~~N~~gI~~~~~~l~r--~psLf~P~~yV--~---SI~dID~----e~Lk~~GI-KgVIfDlDNTLt~p~ 198 (257)
-..+|+|+...||.++|...+..=.. ..+.+.|...- . ..+.-|+ +.|++.|+ +|.=+.+ ....
T Consensus 257 d~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~g~~l~l----~~~~ 332 (460)
T cd08515 257 DVRVRQALNHAIDRQAIVKALWGGRAKVPNTACQPPQFGCEFDVDTKYPYDPEKAKALLAEAGYPDGFEIDY----YAYR 332 (460)
T ss_pred CHHHHHHHHhhcCHHHHHHHHhcCcccccCCCCCCccccccccccCCCCCCHHHHHHHHHHcCCCCCceEEE----EecC
Confidence 35799999999999998753321000 11113332111 1 1123344 45788898 4433322 1111
Q ss_pred C-CCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 199 S-LTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 199 s-~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
. .....++.+.+.+-+++.|++|-|..
T Consensus 333 ~~~~~~~~~a~~i~~~l~~~Gi~v~i~~ 360 (460)
T cd08515 333 GYYPNDRPVAEAIVGMWKAVGINAELNV 360 (460)
T ss_pred CCCCchHHHHHHHHHHHHHhCceEEEEE
Confidence 1 12335566677777777899866543
No 301
>cd08501 PBP2_Lpqw The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold. LpqW is one of key players in synthesis and transport of the unique components of the mycobacterial cell wall which is a complex structure rich in two related lipoglycans, the phosphatidylinositol mannosides (PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly conserved lipoprotein that transport intermediates from a pathway for mature PIMs production into a pathway for LAMs biosynthesis, thus controlling the relative abundance of these two essential components of cell wall. LpqW is thought to have been adapted by the cell-wall biosynthesis machinery of mycobacteria and other closely related pathogens, evolving to play an important role in PIMs/LAMs biosynthesis. Most of periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the LpqW protein. The structural topology of these domains is most similar to
Probab=24.79 E-value=1.7e+02 Score=27.64 Aligned_cols=94 Identities=18% Similarity=0.096 Sum_probs=51.3
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhcC------cccCCce--ecCC---cccCCh----HHHHhcCccEE--EEcCCC--
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKDR------HLALPHV--TVPD---IRYIDW----AELQRRGFKGV--VFDKDN-- 192 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~p------sLf~P~~--yV~S---I~dID~----e~Lk~~GIKgV--IfDlDN-- 192 (257)
..+|+|+...||.++|...+..-...+ .++.|.. +... ...-|+ +.|++.|++.- -++.|+
T Consensus 266 ~~vR~Ai~~aiDr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~kAk~lL~~aG~~~~~~g~~~~g~~ 345 (486)
T cd08501 266 VAVRKAFLKAIDRDTIARIAFGGLPPEAEPPGSHLLLPGQAGYEDNSSAYGKYDPEAAKKLLDDAGYTLGGDGIEKDGKP 345 (486)
T ss_pred HHHHHHHHHhCCHHHHHHHHhcCCCCCCcCCCCeEecccccccccCccccCCCCHHHHHHHHHhcceeccCCccccCCcc
Confidence 469999999999999885332111111 1233321 2221 223454 45889998631 003333
Q ss_pred -c--ccCCCCCCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 193 -T--LTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 193 -T--Lt~p~s~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
+ |+.+..........+.+.+-+++.|++|-|..
T Consensus 346 ~~l~l~~~~~~~~~~~~a~~i~~~l~~iGi~v~i~~ 381 (486)
T cd08501 346 LTLRIAYDGDDPTAVAAAELIQDMLAKAGIKVTVVS 381 (486)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHHhcCCEEEecc
Confidence 2 22222233345566677777777899866544
No 302
>PRK08303 short chain dehydrogenase; Provisional
Probab=24.62 E-value=1.3e+02 Score=27.26 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHhcCCcEEEEeCCC-C
Q 025153 204 GPLSSSIEQCKSVFGHDIAVFSNSA-G 229 (257)
Q Consensus 204 Pel~~~w~e~k~~fGikV~IVSNNa-G 229 (257)
..+...+.+..+.+|. |=++-||+ |
T Consensus 80 ~~v~~~~~~~~~~~g~-iDilVnnA~g 105 (305)
T PRK08303 80 EQVRALVERIDREQGR-LDILVNDIWG 105 (305)
T ss_pred HHHHHHHHHHHHHcCC-ccEEEECCcc
Confidence 4566666777777763 44444556 5
No 303
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=24.52 E-value=4.2e+02 Score=26.07 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=17.0
Q ss_pred hcCCcEEEEeCCCCCCCCCCch
Q 025153 216 VFGHDIAVFSNSAGNLGNCLFT 237 (257)
Q Consensus 216 ~fGikV~IVSNNaGs~dd~~~~ 237 (257)
+.|.+.++|||..|.+-|--.+
T Consensus 243 ~~Gvd~I~VsnhGGrqld~~~~ 264 (367)
T PLN02493 243 QAGAAGIIVSNHGARQLDYVPA 264 (367)
T ss_pred HcCCCEEEECCCCCCCCCCchh
Confidence 4799999999999976664433
No 304
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=24.43 E-value=53 Score=27.90 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.7
Q ss_pred HHHhcCccEEEEcCCC
Q 025153 177 ELQRRGFKGVVFDKDN 192 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDN 192 (257)
.|.+.|.|++++|.|=
T Consensus 24 ~la~~g~~VlliD~D~ 39 (251)
T TIGR01969 24 ALAKLGKKVLALDADI 39 (251)
T ss_pred HHHHCCCeEEEEeCCC
Confidence 4677899999999994
No 305
>PRK13236 nitrogenase reductase; Reviewed
Probab=24.38 E-value=49 Score=30.27 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.2
Q ss_pred HHHHhcCccEEEEcCCCc
Q 025153 176 AELQRRGFKGVVFDKDNT 193 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNT 193 (257)
..|.+.|.|++++|.|=.
T Consensus 28 ~~La~~G~rVLliD~D~q 45 (296)
T PRK13236 28 AAMAEMGQRILIVGCDPK 45 (296)
T ss_pred HHHHHCCCcEEEEEccCC
Confidence 357889999999999955
No 306
>cd08517 PBP2_NikA_DppA_OppA_like_13 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=24.29 E-value=3.4e+02 Score=25.48 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=47.7
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhc--CcccCCce--ecCC-c--ccCCh----HHHHhcCccEEEEcCCC---c--cc
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKD--RHLALPHV--TVPD-I--RYIDW----AELQRRGFKGVVFDKDN---T--LT 195 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~--psLf~P~~--yV~S-I--~dID~----e~Lk~~GIKgVIfDlDN---T--Lt 195 (257)
+.+|+||...||.++|...+..-... ..++-|.. +... + +.-|+ +.|++.|++. +.|+ + |.
T Consensus 263 ~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~---~~~G~~~~l~l~ 339 (480)
T cd08517 263 VRVRQAIAHAIDRQFIVDTVFFGYGKPATGPISPSLPFFYDDDVPTYPFDVAKAEALLDEAGYPR---GADGIRFKLRLD 339 (480)
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCcceecccccCCCcccccCCCCCCCCCCHHHHHHHHHHcCCCc---CCCCceEEEEEE
Confidence 57999999999999988643211011 12232222 1111 1 22344 4578899862 1122 2 22
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 196 APYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 196 ~p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
..........+.+.+.+..++.|++|=|.
T Consensus 340 ~~~~~~~~~~~a~~i~~~l~~iGi~v~i~ 368 (480)
T cd08517 340 PLPYGEFWKRTAEYVKQALKEVGIDVELR 368 (480)
T ss_pred ecCCCchHHHHHHHHHHHHHHcCCEEEEE
Confidence 11111122456667777777789986654
No 307
>PRK15413 glutathione ABC transporter substrate-binding protein GsiB; Provisional
Probab=24.18 E-value=2.5e+02 Score=27.14 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=46.8
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHh--cCcccCCceec-CCc--ccCCh----HHHHhcCcc-EEEEcCCCcccCCCCCC
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAK--DRHLALPHVTV-PDI--RYIDW----AELQRRGFK-GVVFDKDNTLTAPYSLT 201 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r--~psLf~P~~yV-~SI--~dID~----e~Lk~~GIK-gVIfDlDNTLt~p~s~e 201 (257)
..+|+|+...||.++|...+..=.. ...++-|.... .++ +.-|+ +.|.+.|++ ++-+ ++.......
T Consensus 283 ~~vRqAi~~AiDr~~i~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~D~ekAk~lL~~aG~~~g~~~----~~~~~~~~~ 358 (512)
T PRK15413 283 PKVREALNYAINRQALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPAKARELLKEAGYPNGFST----TLWSSHNHS 358 (512)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcCCcccccCCCCCCcccccccCCCCCCHHHHHHHHHHcCCCCCeeE----EEEecCCCc
Confidence 4599999999999998864321111 11234333211 222 12244 457889985 3211 232222222
Q ss_pred CChhHHHHHHHHHHhcCCcEEE
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAV 223 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~I 223 (257)
....+.+.+.+-+++.|++|=|
T Consensus 359 ~~~~~a~~iq~~l~~iGI~v~i 380 (512)
T PRK15413 359 TAQKVLQFTQQQLAQVGIKAQV 380 (512)
T ss_pred cHHHHHHHHHHHHHhcCcEEEE
Confidence 3345556667767778997544
No 308
>PF13707 RloB: RloB-like protein
Probab=24.04 E-value=82 Score=26.13 Aligned_cols=48 Identities=31% Similarity=0.385 Sum_probs=27.7
Q ss_pred CccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 025153 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGNLGNCLFTAYLLIWLLLLF 248 (257)
Q Consensus 182 GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNaGs~dd~~~~~~~~iw~~~~~ 248 (257)
.--.+|||.| ....-.+.+.+.+..+++. |+ .+++||-. |- +|+++=|
T Consensus 61 d~v~~V~D~D------~~~~~~~~~~~~~~~a~~~-~i-~l~~SnPc-------FE----~WlLlHf 108 (183)
T PF13707_consen 61 DEVWCVFDRD------QNDFEHEKLEEAIKKAKRN-KI-NLAVSNPC-------FE----LWLLLHF 108 (183)
T ss_pred CEEEEEEeCC------CCcCcHHHHHHHHHhcccc-Ce-EEEEecCc-------HH----HHHHHhc
Confidence 3447899999 2222334454444444442 34 67888875 22 6877654
No 309
>COG0747 DdpA ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]
Probab=24.03 E-value=6e+02 Score=23.90 Aligned_cols=90 Identities=21% Similarity=0.228 Sum_probs=52.8
Q ss_pred HHHHHHHhhhcchHHHHHHHHHH--HhcCcccCCc---eecCCcccC-----Ch----HHHHhcCccEE--------EEc
Q 025153 132 SQLKAALGQRINVEGIVSSTVVF--AKDRHLALPH---VTVPDIRYI-----DW----AELQRRGFKGV--------VFD 189 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l--~r~psLf~P~---~yV~SI~dI-----D~----e~Lk~~GIKgV--------IfD 189 (257)
+++|+||.-.||-++|+..+..= ........|. .|-+.+... |+ +.|.+.|++.. .+.
T Consensus 313 ~~vRqAl~~aidr~~i~~~~~~G~~~~~~~~~~~~~~~~y~~~~~~~~~~~~d~~~Ak~lL~eaG~~~~~g~~~~~~~~~ 392 (556)
T COG0747 313 VRVRQALAYAIDRDAIVDTVLKGLGAVPADGPVPPLVPGYNPDIEKYAADAYDPEKAKALLDEAGYKDNDGFGGGPLTLT 392 (556)
T ss_pred hHHHHHHHHhcCHHHHHHHHhcccccccCCCCCCCcccccccccccccccCCCHHHHHHHHHHcCCCCCCCCcceeEEEe
Confidence 45899999999999998755431 1122233332 222222222 33 55889999972 222
Q ss_pred CCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEEe
Q 025153 190 KDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (257)
Q Consensus 190 lDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IVS 225 (257)
.-+ ..+ ........+.+.+-.+..|++|-|..
T Consensus 393 ~~~---~~~-~~~~~~~a~~i~~~l~~iGI~v~~~~ 424 (556)
T COG0747 393 LES---AGY-NPGARAIAELIQAQLAKIGIKVELQT 424 (556)
T ss_pred ccc---CCC-CcchHHHHHHHHHHHHHcCCeeEEEE
Confidence 222 223 34555667777777778899877654
No 310
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=23.92 E-value=97 Score=24.72 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 204 GPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 204 Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
|.+.+.+..+++ .|++++|+|++.
T Consensus 76 ~g~~~~l~~l~~-~g~~~~ivS~~~ 99 (177)
T TIGR01488 76 PGARELISWLKE-RGIDTVIVSGGF 99 (177)
T ss_pred cCHHHHHHHHHH-CCCEEEEECCCc
Confidence 344444444433 355555555543
No 311
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=23.91 E-value=70 Score=30.35 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=30.3
Q ss_pred ChHHHHhcCccEE-EEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcE
Q 025153 174 DWAELQRRGFKGV-VFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDI 221 (257)
Q Consensus 174 D~e~Lk~~GIKgV-IfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV 221 (257)
-++.|+++|++.| |.-.|| |.+ .++|.+..+..+-...++.+|
T Consensus 128 ~L~~l~~~G~~yi~v~nvDN-L~a----~~Dp~~lg~~~~~~~~~~~ev 171 (300)
T cd00897 128 LLDTLLAQGKEYLFVSNIDN-LGA----TVDLRILNHMVDNKAEYIMEV 171 (300)
T ss_pred cHHHHHhcCCEEEEEEeccc-ccc----cCCHHHHHHHHhcCCceEEEE
Confidence 4688999999987 568999 763 667888887666444444443
No 312
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=23.90 E-value=2.4e+02 Score=24.97 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHhcCccEEEEcCCCcccCCCC---CCCChhHHHHHHHHHHhcC--CcEEEEeCCCCC
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYS---LTLWGPLSSSIEQCKSVFG--HDIAVFSNSAGN 230 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s---~ei~Pel~~~w~e~k~~fG--ikV~IVSNNaGs 230 (257)
..|.+.||+++.+|+-+.=-.+.. ..-.+...+.+.+..+..+ -+++||-.|-|.
T Consensus 39 ~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~~l~~~~~v~lvGhS~GG 98 (273)
T PLN02211 39 CLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSLPENEKVILVGHSAGG 98 (273)
T ss_pred HHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCCCCCEEEEEECchH
Confidence 456678999999998764211111 0111233344555544442 468888887764
No 313
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.87 E-value=1.5e+02 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHhcCCcEEEEeCCCCC
Q 025153 204 GPLSSSIEQCKSVFGHDIAVFSNSAGN 230 (257)
Q Consensus 204 Pel~~~w~e~k~~fGikV~IVSNNaGs 230 (257)
+.+.+.+.+..+.+|. +=++=||+|.
T Consensus 73 ~~v~~~~~~~~~~~g~-ld~lv~nAg~ 98 (258)
T PRK07533 73 GQLEAVFARIAEEWGR-LDFLLHSIAF 98 (258)
T ss_pred HHHHHHHHHHHHHcCC-CCEEEEcCcc
Confidence 3566677777777763 4444466764
No 314
>PLN02511 hydrolase
Probab=23.72 E-value=1.9e+02 Score=27.38 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=33.4
Q ss_pred HHHHhcCccEEEEcCCCcc----cC--CCCCCCChhHHHHHHHHHHhcCC-cEEEEeCCCCC
Q 025153 176 AELQRRGFKGVVFDKDNTL----TA--PYSLTLWGPLSSSIEQCKSVFGH-DIAVFSNSAGN 230 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTL----t~--p~s~ei~Pel~~~w~e~k~~fGi-kV~IVSNNaGs 230 (257)
..+.+.|+++|++|.=|.= .. .+.....+++.+.+..+...++. ++++|-.|-|.
T Consensus 123 ~~~~~~g~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg 184 (388)
T PLN02511 123 LRARSKGWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRYPSANLYAAGWSLGA 184 (388)
T ss_pred HHHHHCCCEEEEEecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHCCCCCEEEEEechhH
Confidence 4456899999999997641 11 11223345666666666655543 47777776553
No 315
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=23.67 E-value=92 Score=26.60 Aligned_cols=10 Identities=30% Similarity=0.332 Sum_probs=4.9
Q ss_pred CCcEEEEeCC
Q 025153 218 GHDIAVFSNS 227 (257)
Q Consensus 218 GikV~IVSNN 227 (257)
|++++|||++
T Consensus 86 g~~~~IvS~~ 95 (214)
T TIGR03333 86 GIPFYVISGG 95 (214)
T ss_pred CCeEEEECCC
Confidence 4455555544
No 316
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=23.49 E-value=57 Score=27.84 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=13.4
Q ss_pred HHHhcCccEEEEcCC
Q 025153 177 ELQRRGFKGVVFDKD 191 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlD 191 (257)
.|.+.|.|++++|.|
T Consensus 23 ~la~~G~rvLliD~D 37 (212)
T cd02117 23 ALAEMGKKVLQVGCD 37 (212)
T ss_pred HHHHCCCcEEEEeCC
Confidence 467789999999999
No 317
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=23.38 E-value=78 Score=30.01 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=26.4
Q ss_pred ChHHHHhcCccEE-EEcCCCcccCCCCCCCChhHHHHHHH
Q 025153 174 DWAELQRRGFKGV-VFDKDNTLTAPYSLTLWGPLSSSIEQ 212 (257)
Q Consensus 174 D~e~Lk~~GIKgV-IfDlDNTLt~p~s~ei~Pel~~~w~e 212 (257)
-++.|+++|++.| |+-.||.|+.. ++|.+..+..+
T Consensus 148 ~l~~l~~~G~~yi~v~~vDN~L~~~----~Dp~~lG~~~~ 183 (323)
T cd04193 148 ILEDMKKRGIKYIHVYSVDNILVKV----ADPVFIGFCIS 183 (323)
T ss_pred hHHHHHhCCCEEEEEEecCcccccc----cCHHHhHHHHH
Confidence 3688999999987 46799999854 56777765555
No 318
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=23.15 E-value=1.2e+02 Score=25.25 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=34.7
Q ss_pred cCChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc--EEEEeCC
Q 025153 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD--IAVFSNS 227 (257)
Q Consensus 172 dID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik--V~IVSNN 227 (257)
.|||..|++.|++.+++=. + -+....+|....-+.++++ .|++ +..++..
T Consensus 9 ~~dw~~~k~~gi~fviika----t-eG~~~~D~~~~~n~~~a~~-aGl~~G~Yhf~~~ 60 (181)
T PF01183_consen 9 DIDWQKVKAAGIDFVIIKA----T-EGTSYVDPYFESNIKNAKA-AGLPVGAYHFARA 60 (181)
T ss_dssp S-SHHHHHHTTEEEEEEEE----E-ETTTEE-TTHHHHHHHHHH-TTSEEEEEEE--T
T ss_pred ccCHHHHHHCCCCEEEEEe----e-eCCCeecchHHHHHHHHHH-cCCeEEEEEEecc
Confidence 5889999999999999865 2 3444577888888888877 6886 4445444
No 319
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.12 E-value=2.1e+02 Score=25.86 Aligned_cols=53 Identities=23% Similarity=0.227 Sum_probs=36.8
Q ss_pred CChHHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCc-EEEEeCC
Q 025153 173 IDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD-IAVFSNS 227 (257)
Q Consensus 173 ID~e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGik-V~IVSNN 227 (257)
+.++.| -.|.|+|||-.=+..+|.=+..--|.+++...++++ -|+. |+.||=|
T Consensus 35 v~~~~l-~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elks-KGVd~iicvSVn 88 (171)
T KOG0541|consen 35 VNVSSL-FKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKS-KGVDEIICVSVN 88 (171)
T ss_pred EEhHHh-cCCceEEEEcCCCccCCccccccCchHHHHHHHHHh-cCCcEEEEEecC
Confidence 334443 467888888888888866566666777777777776 5775 6666643
No 320
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.09 E-value=58 Score=27.74 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=13.1
Q ss_pred HHHhcCccEEEEcCC
Q 025153 177 ELQRRGFKGVVFDKD 191 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlD 191 (257)
.|.+.|.|++++|.|
T Consensus 25 ~la~~g~~VlliD~D 39 (246)
T TIGR03371 25 ALKLLGEPVLAIDLD 39 (246)
T ss_pred HHHhCCCcEEEEeCC
Confidence 356789999999999
No 321
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=23.08 E-value=54 Score=30.10 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=13.9
Q ss_pred HHHHhcCccEEEEcCC
Q 025153 176 AELQRRGFKGVVFDKD 191 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlD 191 (257)
..|.+.|+|++++|.|
T Consensus 22 ~~La~~G~rVLlID~D 37 (290)
T CHL00072 22 IALARRGKKVLQIGCD 37 (290)
T ss_pred HHHHHCCCeEEEEecc
Confidence 3567899999999999
No 322
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=23.03 E-value=96 Score=30.02 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=16.7
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 203 WGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 203 ~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.|.+.+.+.++++ .|.+++|+||+.
T Consensus 186 ~pgl~elL~~Lr~-~G~klfLvTNS~ 210 (343)
T TIGR02244 186 DPKLPLFLSKLKE-HGKKLFLLTNSD 210 (343)
T ss_pred chhHHHHHHHHHH-CCCeEEEEeCCC
Confidence 4566665666554 577788888775
No 323
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=22.99 E-value=2.2e+02 Score=24.48 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=41.6
Q ss_pred cCChHHHHhcCccEEEEcCCCc---ccCCCCCCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 172 YIDWAELQRRGFKGVVFDKDNT---LTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 172 dID~e~Lk~~GIKgVIfDlDNT---Lt~p~s~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
.-..+.|-..|+++++++.||. |+.-+++.+.|++.+.+.+.....+-.+-|++.
T Consensus 52 ~~~~~~lg~~gi~~~~v~~~g~~~~lv~~DsNNm~~~lr~~i~~~~~~~~d~~ev~TT 109 (179)
T PF09843_consen 52 LGEHEGLGIGGISALVVEVGGQRSALVLADSNNMEPGLREKIREALGDVVDEVEVMTT 109 (179)
T ss_pred CCCCCCcCccccEEEEEEeCCcEEEEEEEECCCCCHHHHHHHHHHHhhhcceeEEecC
Confidence 4445677889999999999887 555689999999998887766544345666654
No 324
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=22.96 E-value=84 Score=31.28 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=38.1
Q ss_pred HHHhcCccEEEEcCCCcccCC--CCCCCChhHHHHHHHHHHhcCC-cEEEEeCCC
Q 025153 177 ELQRRGFKGVVFDKDNTLTAP--YSLTLWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDNTLt~p--~s~ei~Pel~~~w~e~k~~fGi-kV~IVSNNa 228 (257)
.+...|.+.+.+-.|+++..- ..+.+-|++.+.++++++ .|+ +++|+||..
T Consensus 336 ~~~~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~-~Gi~~v~vvTgd~ 389 (536)
T TIGR01512 336 RPESAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKA-LGIEKVVMLTGDR 389 (536)
T ss_pred chhhCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHH-cCCCcEEEEcCCC
Confidence 455677788888888875422 345677888888888876 799 999999864
No 325
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=22.94 E-value=1e+02 Score=27.08 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=18.8
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+-|.+.+.+..+++ .|++++|+||+.
T Consensus 108 ~l~pgv~e~L~~L~~-~g~~l~I~Tn~~ 134 (248)
T PLN02770 108 KPLNGLYKLKKWIED-RGLKRAAVTNAP 134 (248)
T ss_pred CcCccHHHHHHHHHH-cCCeEEEEeCCC
Confidence 345667666666555 588888998875
No 326
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=22.82 E-value=49 Score=32.02 Aligned_cols=42 Identities=26% Similarity=0.181 Sum_probs=25.1
Q ss_pred HHhcCccEEEEcCCCcccCCCCCCCChhHHH-HHHHHHHhcCC
Q 025153 178 LQRRGFKGVVFDKDNTLTAPYSLTLWGPLSS-SIEQCKSVFGH 219 (257)
Q Consensus 178 Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~-~w~e~k~~fGi 219 (257)
|.=..|+++-||.|.||+..+.++...-+-+ ..+.+.+.+|.
T Consensus 7 l~l~~i~~~GFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gY 49 (343)
T TIGR02244 7 LNLEKIQVFGFDMDYTLAQYKSPELEALIYDLAKERLVKRFGY 49 (343)
T ss_pred cccccCCEEEECccccccccChHHHHHHHHHHHHHHHHHhcCC
Confidence 3446799999999999996555344332222 23333344455
No 327
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=22.69 E-value=1e+02 Score=28.01 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=20.3
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 201 ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+.|.+.+.+..+++ .|++++||||+.
T Consensus 144 ~l~pGv~elL~~L~~-~g~~l~IvTn~~ 170 (286)
T PLN02779 144 PLRPGVLRLMDEALA-AGIKVAVCSTSN 170 (286)
T ss_pred CchhhHHHHHHHHHH-CCCeEEEEeCCC
Confidence 456777776777665 589999999964
No 328
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.63 E-value=2.9e+02 Score=24.37 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=29.5
Q ss_pred HHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhc-CCcEEEEe
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVF-GHDIAVFS 225 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~f-GikV~IVS 225 (257)
+.+++.||++|=+++|+..- +......++..+.+.+..++. |..+.+.+
T Consensus 17 ~~a~~~G~d~vEl~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~ 66 (279)
T cd00019 17 KRAKEIGFDTVAMFLGNPRS-WLSRPLKKERAEKFKAIAEEGPSICLSVHA 66 (279)
T ss_pred HHHHHcCCCEEEEEcCCCCc-cCCCCCCHHHHHHHHHHHHHcCCCcEEEEc
Confidence 45678888888777777643 222223455555677776666 55555544
No 329
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=22.29 E-value=1.6e+02 Score=26.17 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=32.8
Q ss_pred HHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcE
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDI 221 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV 221 (257)
+.|+++|+++.+++..+.+...--. ++..+.+.+..+..|+++
T Consensus 153 ~~~~~~G~~v~l~e~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~ 195 (415)
T COG0446 153 EAAAKRGKKVTLIEAADRLGGQLLD---PEVAEELAELLEKYGVEL 195 (415)
T ss_pred HHHHHcCCeEEEEEcccccchhhhh---HHHHHHHHHHHHHCCcEE
Confidence 5679999999999999998843332 677777888877777544
No 330
>PRK00419 DNA primase small subunit; Reviewed
Probab=22.07 E-value=94 Score=30.64 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=40.5
Q ss_pred ceecCCcccCChHH--HHhcCc--cEEEEcCCCcccCCCCC----C-------CChhHHHHHHHHHHhcCCc--EEEEeC
Q 025153 164 HVTVPDIRYIDWAE--LQRRGF--KGVVFDKDNTLTAPYSL----T-------LWGPLSSSIEQCKSVFGHD--IAVFSN 226 (257)
Q Consensus 164 ~~yV~SI~dID~e~--Lk~~GI--KgVIfDlDNTLt~p~s~----e-------i~Pel~~~w~e~k~~fGik--V~IVSN 226 (257)
|.|+..++..+|.. ..+.|. +=+|||+|-|=.+ ... . ...++...+.-+.+.||++ .+++|=
T Consensus 69 ~iy~s~ayy~~P~~~~m~~k~w~~~ELvFDID~dd~~-~~~~~~~~~c~cl~~~k~~a~klld~L~~DFGf~~i~~vFSG 147 (376)
T PRK00419 69 HVYYSVARYELPSARTMEEKGWLGADLIFDLDADHLP-GVRCEEDSYCECLERAKEEALRLLDFLEDDFGFEDIHVVFSG 147 (376)
T ss_pred eEEEeeeeecCCccccccccCccccceEEEeCCCcCC-CcCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEEEeC
Confidence 67777788777763 234443 3599999988442 221 1 1234444455556789995 677888
Q ss_pred CCC
Q 025153 227 SAG 229 (257)
Q Consensus 227 NaG 229 (257)
+.|
T Consensus 148 ~RG 150 (376)
T PRK00419 148 GRG 150 (376)
T ss_pred CCe
Confidence 776
No 331
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=21.99 E-value=3.5e+02 Score=22.03 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=26.4
Q ss_pred HHhcCccEEEEcCCCcccCC--CCCC--C-ChhHHHHHHHHHHhcCC-cEEEEeCCCC
Q 025153 178 LQRRGFKGVVFDKDNTLTAP--YSLT--L-WGPLSSSIEQCKSVFGH-DIAVFSNSAG 229 (257)
Q Consensus 178 Lk~~GIKgVIfDlDNTLt~p--~s~e--i-~Pel~~~w~e~k~~fGi-kV~IVSNNaG 229 (257)
|.+.|++++.+|.-+.=... .... . .+...+....+.+..|. ++.|+--|-|
T Consensus 49 l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG~S~G 106 (288)
T TIGR01250 49 LKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDELEEVREKLGLDKFYLLGHSWG 106 (288)
T ss_pred HHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCcEEEEEeehH
Confidence 45568899999887652211 1111 1 12333334444455554 4666665554
No 332
>COG1467 PRI1 Eukaryotic-type DNA primase, catalytic (small) subunit [DNA replication, recombination, and repair]
Probab=21.94 E-value=1.5e+02 Score=28.92 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=29.6
Q ss_pred cEEEEcCCCcccCCCCC----CCCh-------hHHHHH-HHHHHhcCCc--EEEEeCCCCC
Q 025153 184 KGVVFDKDNTLTAPYSL----TLWG-------PLSSSI-EQCKSVFGHD--IAVFSNSAGN 230 (257)
Q Consensus 184 KgVIfDlDNTLt~p~s~----ei~P-------el~~~w-~e~k~~fGik--V~IVSNNaGs 230 (257)
+-+|||+|-+-.+ ... .+.+ +++... .-+.++||++ .++.|=|.|-
T Consensus 94 ~eLVFDIDad~lp-~~~~~~~~v~~~c~~~~~e~~~l~~~~L~~DfGf~di~ivFSG~RGy 153 (341)
T COG1467 94 AELVFDIDADHLP-ERRCDKDSVCKMCLEDKKEAVRLLNDFLREDFGFKDIKIVFSGRRGY 153 (341)
T ss_pred hhheEecccccCc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCce
Confidence 6799999999874 433 1211 222223 3445789998 8888988763
No 333
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.90 E-value=1.5e+02 Score=25.62 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.0
Q ss_pred ChHHHHhcCccEEEEc
Q 025153 174 DWAELQRRGFKGVVFD 189 (257)
Q Consensus 174 D~e~Lk~~GIKgVIfD 189 (257)
|++.+++.|||.||.-
T Consensus 20 D~~~iaa~GFksiI~n 35 (130)
T COG3453 20 DIASIAALGFKSIICN 35 (130)
T ss_pred HHHHHHHhccceeccc
Confidence 4577899999999963
No 334
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.67 E-value=1.5e+02 Score=26.04 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHhcCCcEEEEeCCCCCC
Q 025153 204 GPLSSSIEQCKSVFGHDIAVFSNSAGNL 231 (257)
Q Consensus 204 Pel~~~w~e~k~~fGikV~IVSNNaGs~ 231 (257)
+.+.+.+.+..+.+| ++=++=||+|..
T Consensus 70 ~~v~~~~~~~~~~~g-~iD~lVnnAG~~ 96 (271)
T PRK06505 70 ASVDAVFEALEKKWG-KLDFVVHAIGFS 96 (271)
T ss_pred HHHHHHHHHHHHHhC-CCCEEEECCccC
Confidence 446677777777776 455556788754
No 335
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=21.66 E-value=61 Score=26.14 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.3
Q ss_pred HHHHhcCccEEEEcCCC
Q 025153 176 AELQRRGFKGVVFDKDN 192 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDN 192 (257)
..|.++|.|++++|.|.
T Consensus 21 ~~la~~g~~VlliD~D~ 37 (195)
T PF01656_consen 21 QALARKGKKVLLIDLDP 37 (195)
T ss_dssp HHHHHTTS-EEEEEEST
T ss_pred hccccccccccccccCc
Confidence 35677999999999986
No 336
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=21.59 E-value=4.8e+02 Score=25.62 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=19.8
Q ss_pred hcCCcEEEEeCCCCCCCCCCchhHHH
Q 025153 216 VFGHDIAVFSNSAGNLGNCLFTAYLL 241 (257)
Q Consensus 216 ~fGikV~IVSNNaGs~dd~~~~~~~~ 241 (257)
+.|.+-++|||-.|.+-|..-+....
T Consensus 247 ~~Gvd~I~VS~HGGrq~~~~~a~~~~ 272 (367)
T TIGR02708 247 KAGASGIWVTNHGGRQLDGGPAAFDS 272 (367)
T ss_pred HcCcCEEEECCcCccCCCCCCcHHHH
Confidence 57889999999999777766654443
No 337
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=21.57 E-value=63 Score=25.31 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=19.4
Q ss_pred ChHHHHhcCccEEEEcCCCcccCC
Q 025153 174 DWAELQRRGFKGVVFDKDNTLTAP 197 (257)
Q Consensus 174 D~e~Lk~~GIKgVIfDlDNTLt~p 197 (257)
+++.|++.||+.|.+|.|=.+..+
T Consensus 40 ~I~~L~~~gi~~V~Id~~k~~~~~ 63 (128)
T PF11871_consen 40 DIEKLRRLGIQEVYIDPDKSRDVP 63 (128)
T ss_pred HHHHHHHCCCcEEEEECCCCcCcc
Confidence 356799999999999998775543
No 338
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.39 E-value=2.9e+02 Score=24.13 Aligned_cols=49 Identities=16% Similarity=0.021 Sum_probs=30.6
Q ss_pred HHHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
+..++.|+++|=+..+..-........+++-.+.+.+..++.|++|.-+
T Consensus 23 ~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 23 VFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred HHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 5568999999988766422111111223444556777778899987654
No 339
>PRK12677 xylose isomerase; Provisional
Probab=21.34 E-value=2.3e+02 Score=27.58 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=33.6
Q ss_pred HHHHhcCccEEEEcCCCcccCCCCCCCC-hhHHHHHHHHHHhcCCcEE-EEeCC
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPYSLTLW-GPLSSSIEQCKSVFGHDIA-VFSNS 227 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~s~ei~-Pel~~~w~e~k~~fGikV~-IVSNN 227 (257)
+.+.+.|+++|=+.. +++.++..+... +...+.+.+.+++.|++|. |.+|.
T Consensus 38 ~~~a~~Gf~gVElh~-~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~ 90 (384)
T PRK12677 38 HKLAELGAYGVTFHD-DDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNL 90 (384)
T ss_pred HHHHHhCCCEEEecc-cccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCC
Confidence 667899999999955 446655544321 1234557777888999966 44553
No 340
>cd08505 PBP2_NikA_DppA_OppA_like_18 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=21.21 E-value=3.5e+02 Score=26.59 Aligned_cols=91 Identities=13% Similarity=0.002 Sum_probs=49.4
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHhc--CcccCCce--ecCC----cccCCh----HHHHhcCccEEEEcCCCc-----c
Q 025153 132 SQLKAALGQRINVEGIVSSTVVFAKD--RHLALPHV--TVPD----IRYIDW----AELQRRGFKGVVFDKDNT-----L 194 (257)
Q Consensus 132 ~~~~~~~gQ~~N~~gI~~~~~~l~r~--psLf~P~~--yV~S----I~dID~----e~Lk~~GIKgVIfDlDNT-----L 194 (257)
..+|+||...||.++|...+..=... ..++-|.. +-+. .+.-|+ +.|.+.|++.-.-++|++ +
T Consensus 306 ~~vR~Ai~~AiDr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~kA~~lL~~AG~~~~~~g~~G~~l~i~~ 385 (528)
T cd08505 306 RKLRQAISIAFDWEEYISIFRNGRAVPAQGPIPPGIFGYRPGEDGKPVRYDLELAKALLAEAGYPDGRDGPTGKPLVLNY 385 (528)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcCcceecccccCCcccCCCcccccCCCCCCHHHHHHHHHHcCCCCCCCCCCCceEEEEE
Confidence 56999999999999988643211111 11222221 1111 233454 358899997421113342 2
Q ss_pred cCCCCCCCChhHHHHHHHHHHhcCCcEEE
Q 025153 195 TAPYSLTLWGPLSSSIEQCKSVFGHDIAV 223 (257)
Q Consensus 195 t~p~s~ei~Pel~~~w~e~k~~fGikV~I 223 (257)
+.... .....+.+.+.+..++.|++|-|
T Consensus 386 ~~~~~-~~~~~~a~~iq~~l~~iGI~v~i 413 (528)
T cd08505 386 DTQAT-PDDKQRLEWWRKQFAKLGIQLNV 413 (528)
T ss_pred ecCCC-chHHHHHHHHHHHHHHcCceEEE
Confidence 22222 33345667777777778998765
No 341
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=21.01 E-value=1e+02 Score=26.53 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=16.5
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.|.+.+.+..+++ .|++++|+||+.
T Consensus 96 ~~pg~~~~L~~L~~-~g~~l~i~Tn~~ 121 (229)
T PRK13226 96 LFDGVEGMLQRLEC-AGCVWGIVTNKP 121 (229)
T ss_pred eCCCHHHHHHHHHH-CCCeEEEECCCC
Confidence 44566665555554 577777777764
No 342
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=21.00 E-value=1e+02 Score=26.58 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHhcCccEEEEcCCCcccCCCCCC-CChhHHHHHHH
Q 025153 177 ELQRRGFKGVVFDKDNTLTAPYSLT-LWGPLSSSIEQ 212 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDNTLt~p~s~e-i~Pel~~~w~e 212 (257)
.|+++|++++|+|++.......... +.+...+.+.+
T Consensus 19 ~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~ 55 (356)
T PF01494_consen 19 ALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQR 55 (356)
T ss_dssp HHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHH
T ss_pred HHHhcccccccchhccccccccccccccccccccccc
Confidence 5799999999999998876443322 56666555544
No 343
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=20.92 E-value=2.4e+02 Score=28.79 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=43.7
Q ss_pred cCcccCCceecCC-cccCCh-----HHHHhcCccEEEEcCCCcccCCCCCC----CChhHHHHHHHHHHhcCC-cEEEEe
Q 025153 157 DRHLALPHVTVPD-IRYIDW-----AELQRRGFKGVVFDKDNTLTAPYSLT----LWGPLSSSIEQCKSVFGH-DIAVFS 225 (257)
Q Consensus 157 ~psLf~P~~yV~S-I~dID~-----e~Lk~~GIKgVIfDlDNTLt~p~s~e----i~Pel~~~w~e~k~~fGi-kV~IVS 225 (257)
.|=++.|-..-+- |.|+.+ +.|.+.|++++++|..|-=....... +.+.+.+.+..+++..|. +|.+|-
T Consensus 189 ~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG 268 (532)
T TIGR01838 189 TPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVG 268 (532)
T ss_pred CcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 4445666554322 445442 45888999999999998311111111 112344556666666677 599988
Q ss_pred CCCCC
Q 025153 226 NSAGN 230 (257)
Q Consensus 226 NNaGs 230 (257)
-+-|.
T Consensus 269 ~cmGG 273 (532)
T TIGR01838 269 YCIGG 273 (532)
T ss_pred ECcCc
Confidence 87764
No 344
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=20.81 E-value=1.2e+02 Score=25.18 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=20.5
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 200 ~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
.+..|++.+.+.++++. .+++|+||+.
T Consensus 98 ~~~~~~~~~~L~~l~~~--~~l~ilTNg~ 124 (229)
T COG1011 98 LPDYPEALEALKELGKK--YKLGILTNGA 124 (229)
T ss_pred CccChhHHHHHHHHHhh--ccEEEEeCCC
Confidence 45667777777777765 6899999974
No 345
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=20.72 E-value=2.2e+02 Score=25.58 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=26.4
Q ss_pred HHHhcCccEEEEcCCCcccCCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 025153 177 ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDNTLt~p~s~ei~Pel~~~w~e~k~~fGikV~IV 224 (257)
.|.+.|-|+|+||+ .+..+ +. ..|+.-+.+.+..+.+|.+|++-
T Consensus 72 ~L~~~ga~~I~~Di--~f~~~-~~-~~~~~D~~la~al~~~~~~vvl~ 115 (310)
T PF05226_consen 72 RLAAAGAKAIGFDI--LFDEP-DP-SNPEGDQALAEALRRAGNRVVLA 115 (310)
T ss_pred HHHhCCCCEEEEEe--eecCC-CC-CCchHHHHHHHHHHhCCCeEEEE
Confidence 35679999999999 34444 22 22222334666666677666643
No 346
>PRK09449 dUMP phosphatase; Provisional
Probab=20.65 E-value=1.1e+02 Score=25.65 Aligned_cols=25 Identities=4% Similarity=-0.011 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 202 LWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 202 i~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.|.+.+.+..++ . |++++|+||+.
T Consensus 96 ~~~g~~~~L~~L~-~-~~~~~i~Tn~~ 120 (224)
T PRK09449 96 PLPGAVELLNALR-G-KVKMGIITNGF 120 (224)
T ss_pred cCccHHHHHHHHH-h-CCeEEEEeCCc
Confidence 4567777677766 2 68888888864
No 347
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=20.45 E-value=1.8e+02 Score=26.08 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=20.5
Q ss_pred HHHHhcCccEE-EEcCCCcccCCCCC
Q 025153 176 AELQRRGFKGV-VFDKDNTLTAPYSL 200 (257)
Q Consensus 176 e~Lk~~GIKgV-IfDlDNTLt~p~s~ 200 (257)
+.|.+.|.|+| |.|.++|+..+...
T Consensus 48 ~~L~~~g~~vv~v~D~~g~~~~~~Gl 73 (227)
T cd01076 48 RFLHEAGAKVVAVSDSDGTIYNPDGL 73 (227)
T ss_pred HHHHHCCCEEEEEECCCCeEECCCCC
Confidence 56778899999 99999999865544
No 348
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=20.42 E-value=2.6e+02 Score=21.86 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=29.8
Q ss_pred HHHHhcCccEEEEcCCCcccCCC----CCCCChhHHHH-HHHHHHhcCC-cEEEEeCCCCC
Q 025153 176 AELQRRGFKGVVFDKDNTLTAPY----SLTLWGPLSSS-IEQCKSVFGH-DIAVFSNSAGN 230 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~p~----s~ei~Pel~~~-w~e~k~~fGi-kV~IVSNNaGs 230 (257)
+.|. .|++++++|.-|.=.... ...-..+.++. ...+.+.+|. ++.|+-.|.|.
T Consensus 22 ~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg 81 (251)
T TIGR03695 22 ELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQLGIEPFFLVGYSMGG 81 (251)
T ss_pred HHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHcCCCeEEEEEeccHH
Confidence 3444 799999999876411111 11112233333 4455555555 68888887763
No 349
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=20.37 E-value=1.1e+02 Score=32.25 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=38.6
Q ss_pred HHHHhcCccEEEEcCCCcccC--CCCCCCChhHHHHHHHHHHhcCCcEEEEeC
Q 025153 176 AELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSN 226 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~--p~s~ei~Pel~~~w~e~k~~fGikV~IVSN 226 (257)
+.+.+.|.+.+.+-.|+++.. .-.+.+-|++.+.+++|++ .|++++++|=
T Consensus 418 ~~~a~~G~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~-~GI~vvMiTG 469 (679)
T PRK01122 418 DEVARKGGTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRK-MGIKTVMITG 469 (679)
T ss_pred HHHHhCCCcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHH-CCCeEEEECC
Confidence 456788999999988888442 2345577889999999887 7999999973
No 350
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=20.30 E-value=1.1e+02 Score=31.94 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=40.1
Q ss_pred HHHHhcCccEEEEcCCCcccC--CCCCCCChhHHHHHHHHHHhcCCcEEEEeCCC
Q 025153 176 AELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (257)
Q Consensus 176 e~Lk~~GIKgVIfDlDNTLt~--p~s~ei~Pel~~~w~e~k~~fGikV~IVSNNa 228 (257)
+.+.+.|.++|.+=.|++++. .-.+++-|++.+.+.++++ .|++++|+|+..
T Consensus 541 ~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~-~gi~~~llTGd~ 594 (741)
T PRK11033 541 NELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKA-LGIKGVMLTGDN 594 (741)
T ss_pred HHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHH-CCCEEEEEcCCC
Confidence 456789999999988988442 2345677888888888876 699999999854
No 351
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=20.20 E-value=68 Score=29.32 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=14.5
Q ss_pred HHHhcCccEEEEcCCC
Q 025153 177 ELQRRGFKGVVFDKDN 192 (257)
Q Consensus 177 ~Lk~~GIKgVIfDlDN 192 (257)
.|.+.|+|++++|.|-
T Consensus 27 ~la~~g~kVLliD~D~ 42 (295)
T PRK13234 27 ALVEMGQKILIVGCDP 42 (295)
T ss_pred HHHHCCCeEEEEeccc
Confidence 5788999999999996
Done!